Query 002197
Match_columns 954
No_of_seqs 755 out of 3599
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 18:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 6.9E-76 1.5E-80 675.8 31.0 383 482-869 30-416 (656)
2 PLN02318 phosphoribulokinase/u 100.0 1.1E-58 2.3E-63 533.8 27.6 363 28-396 31-410 (656)
3 COG0572 Udk Uridine kinase [Nu 100.0 3.6E-33 7.8E-38 289.9 14.2 176 515-692 6-193 (218)
4 COG1437 CyaB Adenylate cyclase 100.0 1.7E-30 3.6E-35 259.6 14.4 141 248-397 22-177 (178)
5 PTZ00301 uridine kinase; Provi 100.0 2.4E-29 5.3E-34 264.5 15.1 173 517-691 3-191 (210)
6 KOG2878 Predicted kinase [Gene 100.0 1.4E-29 3E-34 254.0 8.1 222 515-763 29-279 (282)
7 PF00485 PRK: Phosphoribulokin 100.0 1E-28 2.2E-33 257.1 12.3 172 519-692 1-191 (194)
8 PLN02348 phosphoribulokinase 99.9 7.1E-27 1.5E-31 262.1 18.2 230 510-757 42-304 (395)
9 PRK05439 pantothenate kinase; 99.9 3.7E-27 8.1E-32 259.9 13.6 240 454-694 11-303 (311)
10 COG0572 Udk Uridine kinase [Nu 99.9 9.8E-27 2.1E-31 242.0 14.4 166 60-226 6-190 (218)
11 PLN02796 D-glycerate 3-kinase 99.9 8E-27 1.7E-31 258.5 11.5 217 515-762 98-344 (347)
12 PLN03046 D-glycerate 3-kinase; 99.9 7.9E-27 1.7E-31 261.4 11.0 231 502-763 192-457 (460)
13 TIGR00318 cyaB adenylyl cyclas 99.9 5.5E-26 1.2E-30 232.8 15.6 137 250-395 24-173 (174)
14 cd02029 PRK_like Phosphoribulo 99.9 4.4E-26 9.4E-31 243.9 13.0 168 519-689 1-202 (277)
15 TIGR00554 panK_bact pantothena 99.9 1.4E-25 3.1E-30 245.8 14.1 223 471-694 6-283 (290)
16 cd02028 UMPK_like Uridine mono 99.9 2.6E-25 5.7E-30 228.9 12.6 168 519-687 1-178 (179)
17 cd02025 PanK Pantothenate kina 99.9 7.3E-25 1.6E-29 232.7 12.6 173 519-692 1-213 (220)
18 COG4240 Predicted kinase [Gene 99.9 1.9E-25 4.1E-30 228.7 7.2 205 512-741 45-273 (300)
19 PRK05439 pantothenate kinase; 99.9 5.7E-24 1.2E-28 234.7 17.7 200 30-229 35-301 (311)
20 PTZ00301 uridine kinase; Provi 99.9 3.8E-24 8.2E-29 225.2 15.0 166 62-228 3-191 (210)
21 PRK15453 phosphoribulokinase; 99.9 4.2E-24 9.1E-29 230.4 15.1 173 515-688 3-207 (290)
22 PRK05480 uridine/cytidine kina 99.9 7.8E-24 1.7E-28 222.8 15.5 175 514-690 3-189 (209)
23 PF00485 PRK: Phosphoribulokin 99.9 1.3E-23 2.7E-28 219.0 12.9 163 64-227 1-189 (194)
24 TIGR00554 panK_bact pantothena 99.9 6E-23 1.3E-27 225.2 17.9 200 31-230 12-282 (290)
25 PLN02348 phosphoribulokinase 99.9 1.9E-22 4.2E-27 226.5 16.5 180 45-226 32-244 (395)
26 PRK07429 phosphoribulokinase; 99.9 3.8E-22 8.3E-27 222.9 16.6 176 513-691 4-188 (327)
27 TIGR00235 udk uridine kinase. 99.9 4.4E-22 9.6E-27 209.4 15.6 175 514-690 3-189 (207)
28 cd02023 UMPK Uridine monophosp 99.9 4.9E-22 1.1E-26 207.4 14.7 172 519-692 1-184 (198)
29 cd02026 PRK Phosphoribulokinas 99.9 6.3E-22 1.4E-26 216.6 15.8 169 519-690 1-178 (273)
30 COG1437 CyaB Adenylate cyclase 99.9 9.6E-22 2.1E-26 196.9 13.4 131 730-865 33-177 (178)
31 PRK06696 uridine kinase; Valid 99.9 2.9E-21 6.2E-26 205.7 16.4 178 513-691 18-212 (223)
32 cd02029 PRK_like Phosphoribulo 99.9 3.1E-21 6.7E-26 206.8 13.9 162 64-226 1-202 (277)
33 cd07890 CYTH-like_AC_IV-like A 99.9 5.2E-21 1.1E-25 195.2 13.9 133 252-393 24-169 (169)
34 cd02028 UMPK_like Uridine mono 99.8 4.9E-21 1.1E-25 197.2 12.3 161 64-224 1-178 (179)
35 cd02024 NRK1 Nicotinamide ribo 99.8 5.4E-21 1.2E-25 197.6 12.3 156 519-674 1-179 (187)
36 cd02025 PanK Pantothenate kina 99.8 5.3E-21 1.2E-25 203.2 12.4 166 64-229 1-213 (220)
37 PRK05480 uridine/cytidine kina 99.8 1.7E-20 3.7E-25 197.5 15.4 167 60-227 4-189 (209)
38 PRK06696 uridine kinase; Valid 99.8 1.2E-19 2.7E-24 193.1 17.5 170 58-227 18-211 (223)
39 PRK07667 uridine kinase; Provi 99.8 6.3E-20 1.4E-24 191.2 14.6 172 508-687 8-193 (193)
40 PRK15453 phosphoribulokinase; 99.8 1E-19 2.2E-24 196.6 15.3 165 60-224 3-206 (290)
41 COG1072 CoaA Panthothenate kin 99.8 8E-20 1.7E-24 194.5 14.2 164 32-195 33-237 (283)
42 TIGR00318 cyaB adenylyl cyclas 99.8 1E-19 2.2E-24 186.6 14.3 132 727-863 30-173 (174)
43 cd02023 UMPK Uridine monophosp 99.8 2.1E-19 4.4E-24 187.6 15.0 165 64-229 1-184 (198)
44 COG1072 CoaA Panthothenate kin 99.8 3E-19 6.5E-24 190.2 13.0 193 455-655 8-237 (283)
45 PRK09270 nucleoside triphospha 99.8 9.3E-19 2E-23 187.2 16.9 183 505-690 21-222 (229)
46 PRK07667 uridine kinase; Provi 99.8 4.5E-19 9.8E-24 184.8 13.9 165 56-224 11-193 (193)
47 PRK07429 phosphoribulokinase; 99.8 5.1E-19 1.1E-23 197.9 14.7 166 59-226 5-186 (327)
48 TIGR00235 udk uridine kinase. 99.8 9.6E-19 2.1E-23 184.1 15.1 170 59-229 3-191 (207)
49 PRK09270 nucleoside triphospha 99.8 3.8E-18 8.2E-23 182.5 17.5 184 42-226 13-221 (229)
50 cd02026 PRK Phosphoribulokinas 99.8 2.3E-18 5.1E-23 188.5 13.9 161 64-226 1-177 (273)
51 cd02024 NRK1 Nicotinamide ribo 99.8 2E-18 4.3E-23 178.5 11.2 147 64-210 1-178 (187)
52 PRK06547 hypothetical protein; 99.8 1.6E-17 3.4E-22 170.0 16.1 153 514-687 12-171 (172)
53 PRK06547 hypothetical protein; 99.7 3.2E-17 6.8E-22 167.8 15.7 153 59-224 12-171 (172)
54 PF01121 CoaE: Dephospho-CoA k 99.7 4.6E-18 9.9E-23 175.1 8.3 154 63-226 1-175 (180)
55 KOG4203 Armadillo/beta-Catenin 99.7 1.7E-17 3.7E-22 193.0 7.9 177 514-691 41-238 (473)
56 PRK14733 coaE dephospho-CoA ki 99.7 8.4E-17 1.8E-21 168.6 10.7 158 60-227 4-182 (204)
57 PTZ00451 dephospho-CoA kinase; 99.7 1E-16 2.3E-21 172.1 10.7 160 62-226 1-189 (244)
58 cd02022 DPCK Dephospho-coenzym 99.7 8.7E-17 1.9E-21 165.6 9.4 154 64-227 1-175 (179)
59 PRK14730 coaE dephospho-CoA ki 99.7 1.2E-16 2.7E-21 166.8 9.9 156 63-227 2-179 (195)
60 PRK00081 coaE dephospho-CoA ki 99.7 1.9E-16 4.1E-21 165.3 9.7 156 62-227 2-178 (194)
61 KOG3220 Similar to bacterial d 99.7 1.4E-16 3E-21 161.8 7.5 159 62-228 1-180 (225)
62 PLN02422 dephospho-CoA kinase 99.6 6.9E-16 1.5E-20 164.4 9.5 158 62-227 1-179 (232)
63 PRK14734 coaE dephospho-CoA ki 99.6 1.4E-15 3.1E-20 159.4 10.1 158 62-227 1-179 (200)
64 COG0237 CoaE Dephospho-CoA kin 99.6 1.6E-15 3.4E-20 158.6 8.2 156 62-228 2-178 (201)
65 PRK14732 coaE dephospho-CoA ki 99.6 1.6E-15 3.4E-20 158.6 8.2 154 64-227 1-175 (196)
66 cd07890 CYTH-like_AC_IV-like A 99.6 1.2E-14 2.5E-19 148.5 12.6 130 727-861 28-169 (169)
67 PRK14731 coaE dephospho-CoA ki 99.6 5.5E-15 1.2E-19 156.0 10.4 160 60-227 3-187 (208)
68 PRK03333 coaE dephospho-CoA ki 99.6 6.9E-15 1.5E-19 169.2 11.7 157 62-228 1-178 (395)
69 PF01928 CYTH: CYTH domain; I 99.5 2.3E-14 5E-19 147.9 10.5 138 250-394 26-183 (185)
70 cd07758 ThTPase Thiamine Triph 99.5 4.4E-14 9.5E-19 147.6 12.0 123 252-385 25-181 (196)
71 cd07762 CYTH-like_Pase_1 Uncha 99.5 4.5E-14 9.8E-19 145.6 11.7 119 255-385 25-171 (180)
72 TIGR00152 dephospho-CoA kinase 99.5 2E-14 4.3E-19 149.1 8.9 155 64-226 1-176 (188)
73 PRK08233 hypothetical protein; 99.5 1.3E-13 2.9E-18 141.1 13.1 150 516-689 2-161 (182)
74 PRK08233 hypothetical protein; 99.5 2.8E-13 6E-18 138.7 13.7 142 62-226 3-161 (182)
75 KOG3308 Uncharacterized protei 99.5 4.9E-14 1.1E-18 143.4 7.8 162 516-681 3-177 (225)
76 PLN03046 D-glycerate 3-kinase; 99.5 2.9E-13 6.3E-18 152.9 13.4 172 41-212 182-429 (460)
77 KOG2702 Predicted panthothenat 99.5 1.4E-13 3.1E-18 142.0 9.9 169 30-203 91-295 (323)
78 cd02022 DPCK Dephospho-coenzym 99.4 2.4E-13 5.2E-18 140.1 7.9 158 519-691 1-176 (179)
79 KOG3308 Uncharacterized protei 99.4 3.6E-13 7.8E-18 137.1 8.6 166 61-230 3-191 (225)
80 PF01121 CoaE: Dephospho-CoA k 99.4 1.6E-13 3.5E-18 141.4 5.8 158 518-690 1-176 (180)
81 PRK14730 coaE dephospho-CoA ki 99.4 7.7E-13 1.7E-17 138.3 8.3 160 518-691 2-180 (195)
82 PLN02796 D-glycerate 3-kinase 99.4 2.1E-12 4.6E-17 144.1 12.2 153 60-212 98-317 (347)
83 PRK14733 coaE dephospho-CoA ki 99.4 1.6E-12 3.5E-17 136.4 9.4 162 514-690 3-182 (204)
84 PRK00081 coaE dephospho-CoA ki 99.3 2E-12 4.4E-17 135.0 8.7 159 517-690 2-178 (194)
85 KOG2702 Predicted panthothenat 99.3 3.3E-12 7.1E-17 132.0 8.7 139 514-653 116-283 (323)
86 PRK14734 coaE dephospho-CoA ki 99.3 4.6E-12 1E-16 133.0 8.9 161 518-691 2-180 (200)
87 PLN02422 dephospho-CoA kinase 99.3 6.6E-12 1.4E-16 134.1 8.5 161 518-691 2-180 (232)
88 KOG4203 Armadillo/beta-Catenin 99.3 3.6E-12 7.8E-17 148.8 7.1 168 59-226 41-236 (473)
89 COG1102 Cmk Cytidylate kinase 99.3 6.1E-12 1.3E-16 124.5 7.4 151 63-229 1-158 (179)
90 PRK14732 coaE dephospho-CoA ki 99.3 9.4E-12 2E-16 130.2 7.9 158 519-691 1-176 (196)
91 PTZ00451 dephospho-CoA kinase; 99.2 1.4E-11 3.1E-16 132.7 8.9 164 517-689 1-189 (244)
92 PRK14731 coaE dephospho-CoA ki 99.2 7.7E-11 1.7E-15 124.5 9.4 163 515-690 3-187 (208)
93 PRK01184 hypothetical protein; 99.2 1.2E-10 2.7E-15 120.1 10.5 155 62-226 1-162 (184)
94 TIGR00152 dephospho-CoA kinase 99.2 5.4E-11 1.2E-15 123.5 7.9 160 519-691 1-178 (188)
95 COG4240 Predicted kinase [Gene 99.2 1E-10 2.2E-15 121.2 9.6 118 45-162 33-175 (300)
96 COG0237 CoaE Dephospho-CoA kin 99.1 3.1E-11 6.7E-16 126.4 5.2 160 517-692 2-179 (201)
97 cd02020 CMPK Cytidine monophos 99.1 2.1E-10 4.5E-15 113.1 9.2 139 64-225 1-146 (147)
98 KOG3220 Similar to bacterial d 99.1 1.2E-10 2.6E-15 119.0 7.0 166 517-694 1-183 (225)
99 PF13207 AAA_17: AAA domain; P 99.1 1.2E-10 2.7E-15 111.3 6.8 116 519-658 1-119 (121)
100 COG1102 Cmk Cytidylate kinase 99.1 1.2E-10 2.7E-15 115.4 6.6 115 518-653 1-115 (179)
101 PRK06217 hypothetical protein; 99.1 7.2E-10 1.6E-14 114.6 11.6 104 62-192 1-107 (183)
102 PF01928 CYTH: CYTH domain; I 99.0 1.1E-09 2.3E-14 113.1 11.4 127 729-862 34-183 (185)
103 PRK04182 cytidylate kinase; Pr 99.0 6.9E-10 1.5E-14 113.3 9.0 150 64-228 2-158 (180)
104 cd02020 CMPK Cytidine monophos 99.0 1.3E-09 2.8E-14 107.4 10.6 142 519-688 1-146 (147)
105 PRK03333 coaE dephospho-CoA ki 99.0 5E-10 1.1E-14 129.2 8.6 159 518-691 2-178 (395)
106 PRK06217 hypothetical protein; 99.0 9.1E-10 2E-14 113.9 9.4 106 518-653 2-108 (183)
107 PRK13477 bifunctional pantoate 99.0 9.7E-10 2.1E-14 129.5 9.3 132 516-650 283-442 (512)
108 TIGR02173 cyt_kin_arch cytidyl 99.0 2.2E-09 4.7E-14 108.8 10.5 151 63-228 1-158 (171)
109 PRK08118 topology modulation p 99.0 3.9E-09 8.5E-14 107.8 11.4 100 62-191 1-101 (167)
110 PF13207 AAA_17: AAA domain; P 98.9 2.3E-09 5E-14 102.5 7.8 104 64-190 1-111 (121)
111 PRK13477 bifunctional pantoate 98.9 4.4E-09 9.6E-14 124.0 11.5 168 61-229 283-489 (512)
112 PRK06762 hypothetical protein; 98.9 1.6E-08 3.5E-13 102.5 13.6 135 62-227 2-148 (166)
113 TIGR02173 cyt_kin_arch cytidyl 98.9 5.6E-09 1.2E-13 105.8 10.0 114 518-651 1-114 (171)
114 cd07762 CYTH-like_Pase_1 Uncha 98.9 8.9E-09 1.9E-13 106.4 10.9 118 729-854 28-172 (180)
115 TIGR00017 cmk cytidylate kinas 98.9 7.2E-09 1.6E-13 110.3 10.1 159 62-227 2-203 (217)
116 PRK07261 topology modulation p 98.9 9.8E-09 2.1E-13 105.2 10.6 99 64-192 2-102 (171)
117 KOG2878 Predicted kinase [Gene 98.9 7.3E-09 1.6E-13 105.6 9.0 152 61-212 30-253 (282)
118 PRK08118 topology modulation p 98.9 7.1E-09 1.5E-13 105.9 8.9 103 519-656 3-106 (167)
119 COG0283 Cmk Cytidylate kinase 98.8 1.8E-08 3.9E-13 104.9 11.8 164 62-226 4-202 (222)
120 cd07891 CYTH-like_CthTTM-like_ 98.8 1.2E-08 2.5E-13 102.3 10.0 84 273-370 32-120 (148)
121 PRK07261 topology modulation p 98.8 8.9E-09 1.9E-13 105.6 9.3 105 519-658 2-108 (171)
122 PRK00023 cmk cytidylate kinase 98.8 1.1E-08 2.3E-13 109.6 9.9 161 62-227 4-205 (225)
123 cd07756 CYTH-like_Pase_CHAD Un 98.8 1.2E-08 2.7E-13 106.8 9.7 126 256-388 32-190 (197)
124 PRK08356 hypothetical protein; 98.8 1.9E-08 4.2E-13 105.1 10.3 151 62-226 5-176 (195)
125 PRK01184 hypothetical protein; 98.8 1.2E-08 2.6E-13 105.3 8.2 155 517-690 1-163 (184)
126 PRK11860 bifunctional 3-phosph 98.8 2.7E-08 5.8E-13 122.3 11.9 183 41-228 420-640 (661)
127 PRK04182 cytidylate kinase; Pr 98.8 1.9E-08 4E-13 102.7 8.5 113 518-650 1-113 (180)
128 PRK00023 cmk cytidylate kinase 98.7 2E-08 4.4E-13 107.4 8.0 130 517-650 4-161 (225)
129 cd07374 CYTH-like_Pase CYTH-li 98.7 3.4E-08 7.3E-13 101.3 9.0 112 254-379 29-172 (174)
130 PRK00131 aroK shikimate kinase 98.7 2.3E-08 5E-13 101.4 7.6 40 60-99 2-41 (175)
131 PRK13949 shikimate kinase; Pro 98.7 5.1E-08 1.1E-12 99.8 9.9 143 63-228 2-156 (169)
132 PLN02200 adenylate kinase fami 98.7 4.7E-08 1E-12 105.3 9.8 121 60-191 41-168 (234)
133 cd07758 ThTPase Thiamine Triph 98.6 1.1E-07 2.5E-12 99.6 10.1 119 728-853 30-181 (196)
134 PRK04040 adenylate kinase; Pro 98.6 1.4E-07 3.1E-12 98.2 10.7 152 62-227 2-173 (188)
135 TIGR00017 cmk cytidylate kinas 98.6 6.7E-08 1.4E-12 102.9 8.2 127 517-652 2-161 (217)
136 PRK05541 adenylylsulfate kinas 98.6 8.5E-08 1.8E-12 98.3 8.4 138 59-227 4-155 (176)
137 cd07761 CYTH-like_CthTTM-like 98.6 1.6E-07 3.4E-12 93.9 9.8 79 275-369 32-117 (146)
138 PRK09518 bifunctional cytidyla 98.6 2.5E-07 5.4E-12 114.8 13.5 162 62-228 1-216 (712)
139 PRK03839 putative kinase; Prov 98.6 2.5E-07 5.5E-12 95.2 10.7 97 64-190 2-101 (180)
140 PRK06762 hypothetical protein; 98.6 2.2E-07 4.8E-12 94.2 9.9 106 517-651 2-118 (166)
141 PRK00625 shikimate kinase; Pro 98.6 2.2E-07 4.9E-12 95.5 9.5 142 64-226 2-150 (173)
142 PRK00131 aroK shikimate kinase 98.5 1.3E-07 2.7E-12 95.9 7.2 38 516-553 3-40 (175)
143 TIGR01359 UMP_CMP_kin_fam UMP- 98.5 3.9E-07 8.4E-12 93.7 10.9 118 64-192 1-127 (183)
144 COG0283 Cmk Cytidylate kinase 98.5 1.5E-07 3.2E-12 98.3 7.5 134 517-652 4-161 (222)
145 cd00464 SK Shikimate kinase (S 98.5 1.8E-07 3.9E-12 93.1 7.7 36 65-100 2-37 (154)
146 PRK08356 hypothetical protein; 98.5 3.7E-07 8.1E-12 95.4 10.0 123 516-651 4-137 (195)
147 PRK14737 gmk guanylate kinase; 98.5 6.1E-07 1.3E-11 93.4 11.0 159 60-226 2-169 (186)
148 PRK04040 adenylate kinase; Pro 98.5 2.3E-07 5E-12 96.7 7.2 38 517-554 2-41 (188)
149 COG3954 PrkB Phosphoribulokina 98.5 6.5E-07 1.4E-11 91.0 10.0 170 516-687 4-206 (289)
150 COG1936 Predicted nucleotide k 98.5 5.4E-07 1.2E-11 91.0 9.2 100 63-192 1-106 (180)
151 PRK03839 putative kinase; Prov 98.5 6E-07 1.3E-11 92.4 9.7 100 519-650 2-101 (180)
152 cd02021 GntK Gluconate kinase 98.5 1.4E-06 3E-11 86.7 11.9 108 64-191 1-120 (150)
153 PLN02200 adenylate kinase fami 98.5 3.3E-07 7.2E-12 98.7 7.9 122 514-651 40-168 (234)
154 TIGR01360 aden_kin_iso1 adenyl 98.5 1.1E-06 2.3E-11 90.6 11.2 120 62-191 3-129 (188)
155 PRK14528 adenylate kinase; Pro 98.4 7.7E-07 1.7E-11 92.5 10.0 120 62-192 1-131 (186)
156 PF13671 AAA_33: AAA domain; P 98.4 1.6E-07 3.4E-12 92.3 4.5 114 64-194 1-123 (143)
157 cd01428 ADK Adenylate kinase ( 98.4 8.4E-07 1.8E-11 91.9 10.0 117 65-191 2-127 (194)
158 PRK05057 aroK shikimate kinase 98.4 1.6E-06 3.5E-11 89.0 11.9 36 62-97 4-39 (172)
159 PRK14527 adenylate kinase; Pro 98.4 7.1E-07 1.5E-11 92.9 9.3 121 60-192 4-135 (191)
160 PRK05541 adenylylsulfate kinas 98.4 6.1E-07 1.3E-11 92.0 7.5 40 514-553 4-48 (176)
161 TIGR01359 UMP_CMP_kin_fam UMP- 98.4 1E-06 2.3E-11 90.6 9.0 117 519-651 1-126 (183)
162 PRK13946 shikimate kinase; Pro 98.4 1E-06 2.2E-11 91.4 8.3 145 61-227 9-160 (184)
163 PRK10078 ribose 1,5-bisphospho 98.4 2E-06 4.4E-11 89.2 10.6 122 63-190 3-132 (186)
164 PRK00625 shikimate kinase; Pro 98.4 1.1E-06 2.5E-11 90.3 8.6 137 519-689 2-150 (173)
165 PRK03731 aroL shikimate kinase 98.4 5.1E-07 1.1E-11 92.0 6.0 106 63-190 3-115 (171)
166 PRK08154 anaerobic benzoate ca 98.4 2.3E-06 5.1E-11 96.0 11.8 41 57-97 128-168 (309)
167 PRK13947 shikimate kinase; Pro 98.3 1.8E-06 3.9E-11 87.8 9.6 37 63-99 2-38 (171)
168 PRK02496 adk adenylate kinase; 98.3 1.3E-06 2.8E-11 90.2 8.6 137 62-210 1-147 (184)
169 PRK14531 adenylate kinase; Pro 98.3 2E-06 4.3E-11 89.1 9.9 117 63-191 3-130 (183)
170 PF13238 AAA_18: AAA domain; P 98.3 2.7E-07 6E-12 88.4 3.3 110 65-194 1-117 (129)
171 cd02019 NK Nucleoside/nucleoti 98.3 1.1E-06 2.4E-11 76.5 6.4 56 64-177 1-63 (69)
172 PRK14532 adenylate kinase; Pro 98.3 3.1E-06 6.8E-11 87.6 10.7 116 65-190 3-128 (188)
173 PRK14530 adenylate kinase; Pro 98.3 2.6E-06 5.5E-11 90.5 9.8 116 64-190 5-127 (215)
174 PF13238 AAA_18: AAA domain; P 98.3 5.3E-07 1.1E-11 86.4 4.1 110 520-652 1-115 (129)
175 PRK08154 anaerobic benzoate ca 98.3 2.5E-06 5.4E-11 95.7 9.9 40 514-553 130-169 (309)
176 PRK00279 adk adenylate kinase; 98.3 3.3E-06 7.2E-11 89.6 9.9 117 64-190 2-128 (215)
177 TIGR01351 adk adenylate kinase 98.3 2.1E-06 4.6E-11 90.7 8.1 117 65-190 2-125 (210)
178 TIGR02322 phosphon_PhnN phosph 98.3 7.9E-06 1.7E-10 83.9 12.0 122 63-190 2-132 (179)
179 PRK09518 bifunctional cytidyla 98.2 2.8E-06 6E-11 105.6 9.9 134 518-652 2-178 (712)
180 PRK14527 adenylate kinase; Pro 98.2 3.4E-06 7.4E-11 87.8 8.8 120 515-651 4-134 (191)
181 PRK11860 bifunctional 3-phosph 98.2 1.8E-06 4E-11 106.3 7.9 124 517-649 442-594 (661)
182 PRK13949 shikimate kinase; Pro 98.2 3.1E-06 6.7E-11 86.7 8.3 36 519-554 3-38 (169)
183 TIGR01360 aden_kin_iso1 adenyl 98.2 5.5E-06 1.2E-10 85.2 10.1 118 517-651 3-129 (188)
184 PF01583 APS_kinase: Adenylyls 98.2 3.2E-06 7E-11 85.2 7.8 104 61-185 1-116 (156)
185 PRK13948 shikimate kinase; Pro 98.2 1.1E-05 2.4E-10 83.7 11.9 39 60-98 8-46 (182)
186 cd00464 SK Shikimate kinase (S 98.2 3.5E-06 7.5E-11 83.9 7.8 35 520-554 2-36 (154)
187 COG0324 MiaA tRNA delta(2)-iso 98.2 2E-07 4.4E-12 103.0 -1.4 173 61-256 2-181 (308)
188 PRK14729 miaA tRNA delta(2)-is 98.2 3.1E-07 6.7E-12 101.9 -0.0 172 62-254 4-179 (300)
189 cd02019 NK Nucleoside/nucleoti 98.2 2.3E-06 5.1E-11 74.4 5.3 26 612-637 34-63 (69)
190 PRK03846 adenylylsulfate kinas 98.2 1.2E-05 2.7E-10 84.2 11.6 42 58-99 20-66 (198)
191 TIGR03263 guanyl_kin guanylate 98.2 7.2E-06 1.6E-10 84.1 9.6 156 63-226 2-165 (180)
192 COG0703 AroK Shikimate kinase 98.2 2.2E-06 4.8E-11 87.3 5.5 142 63-238 3-163 (172)
193 PTZ00088 adenylate kinase 1; P 98.2 8.2E-06 1.8E-10 87.7 10.1 121 61-190 5-131 (229)
194 cd01428 ADK Adenylate kinase ( 98.2 3.9E-06 8.4E-11 86.9 7.3 117 520-651 2-127 (194)
195 PRK13946 shikimate kinase; Pro 98.2 7.1E-06 1.5E-10 85.1 9.2 36 517-552 10-45 (184)
196 PHA02530 pseT polynucleotide k 98.2 6.9E-06 1.5E-10 91.4 9.7 127 62-211 2-143 (300)
197 TIGR01313 therm_gnt_kin carboh 98.1 1.9E-05 4.1E-10 79.8 11.8 34 65-98 1-34 (163)
198 TIGR00455 apsK adenylylsulfate 98.1 2.3E-05 4.9E-10 81.0 12.6 106 59-185 15-132 (184)
199 PRK00091 miaA tRNA delta(2)-is 98.1 4.7E-07 1E-11 101.1 -0.2 43 61-103 3-47 (307)
200 cd00227 CPT Chloramphenicol (C 98.1 1.9E-05 4E-10 81.1 11.5 37 63-99 3-41 (175)
201 PRK14528 adenylate kinase; Pro 98.1 1.2E-05 2.6E-10 83.6 10.1 118 519-651 3-130 (186)
202 PRK05057 aroK shikimate kinase 98.1 2E-05 4.4E-10 80.9 11.4 37 517-553 4-40 (172)
203 PRK12269 bifunctional cytidyla 98.1 7.7E-06 1.7E-10 102.3 9.8 164 63-228 35-270 (863)
204 PRK13808 adenylate kinase; Pro 98.1 1.1E-05 2.3E-10 90.8 9.9 115 65-189 3-127 (333)
205 PLN02165 adenylate isopentenyl 98.1 4.9E-06 1.1E-10 93.3 7.0 45 59-103 40-86 (334)
206 COG0529 CysC Adenylylsulfate k 98.1 1.6E-05 3.5E-10 80.7 9.8 54 57-110 18-76 (197)
207 KOG3079 Uridylate kinase/adeny 98.1 1.1E-05 2.5E-10 82.2 8.8 126 59-193 5-137 (195)
208 PRK14530 adenylate kinase; Pro 98.1 6.3E-06 1.4E-10 87.5 7.4 118 519-650 5-127 (215)
209 cd02021 GntK Gluconate kinase 98.1 2.9E-05 6.3E-10 77.3 11.7 36 519-554 1-36 (150)
210 COG1428 Deoxynucleoside kinase 98.1 6E-06 1.3E-10 86.2 6.9 65 628-697 126-197 (216)
211 COG1428 Deoxynucleoside kinase 98.1 1.4E-05 3.1E-10 83.4 9.5 59 168-226 126-188 (216)
212 PRK14531 adenylate kinase; Pro 98.1 1.8E-05 4E-10 81.9 10.3 116 518-650 3-129 (183)
213 PRK03731 aroL shikimate kinase 98.1 8.3E-06 1.8E-10 83.1 7.6 36 519-554 4-39 (171)
214 PLN02199 shikimate kinase 98.1 1.9E-05 4E-10 87.1 10.6 57 40-99 83-139 (303)
215 KOG3347 Predicted nucleotide k 98.1 2.2E-05 4.9E-10 77.4 9.7 103 63-192 8-116 (176)
216 COG0563 Adk Adenylate kinase a 98.0 2.6E-05 5.6E-10 80.7 10.8 117 64-191 2-129 (178)
217 cd02030 NDUO42 NADH:Ubiquinone 98.0 1.8E-05 4E-10 84.4 10.0 58 169-226 143-202 (219)
218 PRK14737 gmk guanylate kinase; 98.0 1.9E-05 4.1E-10 82.3 9.6 159 516-689 3-169 (186)
219 TIGR01351 adk adenylate kinase 98.0 8.4E-06 1.8E-10 86.2 7.1 116 520-650 2-125 (210)
220 PRK12338 hypothetical protein; 98.0 1.8E-05 4E-10 88.4 9.8 38 61-98 3-40 (319)
221 PRK12338 hypothetical protein; 98.0 1E-05 2.3E-10 90.3 7.7 39 516-554 3-41 (319)
222 PF13671 AAA_33: AAA domain; P 98.0 6.3E-06 1.4E-10 80.9 5.1 36 519-554 1-36 (143)
223 COG3954 PrkB Phosphoribulokina 98.0 3.4E-05 7.4E-10 78.7 10.2 160 61-221 4-203 (289)
224 PRK14532 adenylate kinase; Pro 98.0 2.8E-05 6E-10 80.6 10.0 35 520-554 3-37 (188)
225 PRK05537 bifunctional sulfate 98.0 2.5E-05 5.5E-10 94.3 10.9 128 34-186 367-509 (568)
226 PLN02674 adenylate kinase 98.0 3.9E-05 8.5E-10 83.1 11.2 121 60-190 29-159 (244)
227 PRK02496 adk adenylate kinase; 98.0 2.5E-05 5.4E-10 80.7 9.2 37 518-554 2-38 (184)
228 cd07891 CYTH-like_CthTTM-like_ 98.0 3.5E-05 7.6E-10 77.3 9.8 85 749-838 34-120 (148)
229 PLN02840 tRNA dimethylallyltra 98.0 3.6E-06 7.9E-11 97.0 2.9 107 59-166 18-127 (421)
230 PRK00279 adk adenylate kinase; 98.0 2.5E-05 5.5E-10 82.9 9.1 36 519-554 2-37 (215)
231 TIGR03574 selen_PSTK L-seryl-t 97.9 2.4E-05 5.2E-10 84.9 8.9 132 64-226 1-151 (249)
232 PTZ00088 adenylate kinase 1; P 97.9 1.7E-05 3.8E-10 85.2 7.6 122 515-650 4-131 (229)
233 TIGR00174 miaA tRNA isopenteny 97.9 1.1E-06 2.4E-11 97.0 -2.0 102 64-166 1-105 (287)
234 TIGR00041 DTMP_kinase thymidyl 97.9 8.9E-05 1.9E-09 77.1 12.2 26 62-87 3-28 (195)
235 PLN02748 tRNA dimethylallyltra 97.9 4.3E-06 9.3E-11 98.0 2.4 107 59-166 19-128 (468)
236 TIGR01313 therm_gnt_kin carboh 97.9 3.3E-05 7.1E-10 78.1 8.4 35 520-554 1-35 (163)
237 PRK00300 gmk guanylate kinase; 97.9 4.7E-05 1E-09 79.9 9.7 27 61-87 4-30 (205)
238 PRK00889 adenylylsulfate kinas 97.9 4.7E-05 1E-09 78.0 9.5 39 61-99 3-46 (175)
239 PRK12339 2-phosphoglycerate ki 97.9 2.1E-05 4.5E-10 82.7 6.5 36 61-96 2-37 (197)
240 cd01673 dNK Deoxyribonucleosid 97.9 5.4E-05 1.2E-09 78.7 9.4 59 168-226 124-185 (193)
241 PRK13947 shikimate kinase; Pro 97.9 4.4E-05 9.6E-10 77.6 8.4 34 520-553 4-37 (171)
242 PRK12269 bifunctional cytidyla 97.8 3.6E-05 7.8E-10 96.4 8.5 37 518-554 35-71 (863)
243 cd02027 APSK Adenosine 5'-phos 97.8 3.2E-05 6.9E-10 77.5 6.4 36 64-99 1-41 (149)
244 TIGR03263 guanyl_kin guanylate 97.8 5.8E-05 1.2E-09 77.4 8.3 26 518-543 2-27 (180)
245 PF08433 KTI12: Chromatin asso 97.8 0.00012 2.5E-09 80.8 10.9 110 62-194 1-124 (270)
246 PRK04220 2-phosphoglycerate ki 97.8 8.5E-05 1.8E-09 82.5 9.8 40 59-98 89-129 (301)
247 COG4088 Predicted nucleotide k 97.8 2.6E-05 5.6E-10 80.8 5.3 139 62-225 1-156 (261)
248 PRK13975 thymidylate kinase; P 97.8 0.00018 4E-09 74.7 11.6 27 63-89 3-29 (196)
249 cd00227 CPT Chloramphenicol (C 97.8 7.2E-05 1.6E-09 76.8 8.3 37 518-554 3-41 (175)
250 KOG1384 tRNA delta(2)-isopente 97.8 4E-05 8.6E-10 84.5 6.6 127 61-189 6-158 (348)
251 PRK13948 shikimate kinase; Pro 97.8 0.00011 2.4E-09 76.3 9.6 39 515-553 8-46 (182)
252 PF00406 ADK: Adenylate kinase 97.8 5E-05 1.1E-09 75.9 6.8 112 67-188 1-122 (151)
253 COG1936 Predicted nucleotide k 97.8 7E-05 1.5E-09 76.0 7.7 105 518-659 1-108 (180)
254 PRK12339 2-phosphoglycerate ki 97.7 0.00014 3E-09 76.5 10.0 39 516-554 2-40 (197)
255 PRK13808 adenylate kinase; Pro 97.7 0.0001 2.2E-09 83.1 8.8 114 520-649 3-127 (333)
256 PRK14529 adenylate kinase; Pro 97.7 0.00014 2.9E-09 77.9 9.2 117 64-191 2-128 (223)
257 PLN02459 probable adenylate ki 97.7 0.00015 3.2E-09 79.1 9.5 120 62-190 29-154 (261)
258 PLN02674 adenylate kinase 97.7 0.00022 4.7E-09 77.3 10.7 121 515-650 29-159 (244)
259 PRK14526 adenylate kinase; Pro 97.7 0.00017 3.6E-09 76.7 9.4 116 65-190 3-123 (211)
260 PRK03846 adenylylsulfate kinas 97.7 0.00024 5.1E-09 74.6 10.4 41 513-553 20-65 (198)
261 PRK05416 glmZ(sRNA)-inactivati 97.7 0.00033 7.1E-09 77.9 11.8 31 60-91 4-34 (288)
262 PRK00698 tmk thymidylate kinas 97.6 0.00024 5.2E-09 74.2 10.1 26 62-87 3-28 (205)
263 COG3265 GntK Gluconate kinase 97.6 0.00019 4.1E-09 71.1 8.3 32 68-99 1-32 (161)
264 TIGR02322 phosphon_PhnN phosph 97.6 0.00019 4.2E-09 73.6 8.9 125 519-650 3-132 (179)
265 PF01202 SKI: Shikimate kinase 97.6 4.5E-05 9.8E-10 77.1 4.0 127 71-228 1-144 (158)
266 PRK14021 bifunctional shikimat 97.6 0.00019 4.1E-09 86.7 9.8 39 60-98 4-42 (542)
267 COG0563 Adk Adenylate kinase a 97.6 3.5E-05 7.7E-10 79.7 3.2 118 519-651 2-129 (178)
268 KOG3079 Uridylate kinase/adeny 97.6 0.00018 3.9E-09 73.6 8.0 125 514-652 5-136 (195)
269 PF03308 ArgK: ArgK protein; 97.6 0.0002 4.3E-09 77.4 8.6 123 47-178 14-152 (266)
270 COG0194 Gmk Guanylate kinase [ 97.6 0.00051 1.1E-08 70.8 11.1 156 61-226 3-167 (191)
271 cd02030 NDUO42 NADH:Ubiquinone 97.6 0.00033 7.1E-09 74.8 10.3 57 629-687 143-200 (219)
272 smart00072 GuKc Guanylate kina 97.6 0.00042 9.2E-09 71.8 10.8 157 62-226 2-167 (184)
273 PHA02530 pseT polynucleotide k 97.6 0.00012 2.5E-09 81.5 6.9 37 517-553 2-39 (300)
274 TIGR03575 selen_PSTK_euk L-ser 97.6 0.00023 4.9E-09 80.7 9.1 127 64-190 1-176 (340)
275 PRK09825 idnK D-gluconate kina 97.6 0.00048 1E-08 71.2 10.6 36 63-98 4-39 (176)
276 PF06414 Zeta_toxin: Zeta toxi 97.6 0.00013 2.7E-09 76.7 6.5 42 59-100 12-56 (199)
277 PHA00729 NTP-binding motif con 97.5 0.00058 1.3E-08 73.0 11.4 108 59-190 14-140 (226)
278 PRK00300 gmk guanylate kinase; 97.5 0.00039 8.5E-09 72.9 9.9 27 516-542 4-30 (205)
279 PF07931 CPT: Chloramphenicol 97.5 0.00066 1.4E-08 70.0 11.2 151 63-240 2-172 (174)
280 PLN02842 nucleotide kinase 97.5 0.00024 5.3E-09 83.8 8.9 115 67-190 2-122 (505)
281 PF01583 APS_kinase: Adenylyls 97.5 0.00021 4.5E-09 72.3 7.2 38 516-553 1-43 (156)
282 cd01672 TMPK Thymidine monopho 97.5 0.00081 1.7E-08 69.4 11.9 31 63-93 1-34 (200)
283 PF00625 Guanylate_kin: Guanyl 97.5 0.00029 6.3E-09 72.8 8.3 168 62-239 2-177 (183)
284 KOG3354 Gluconate kinase [Carb 97.5 9.2E-05 2E-09 73.5 4.2 39 61-99 11-49 (191)
285 PRK05506 bifunctional sulfate 97.5 0.00059 1.3E-08 84.0 11.8 108 57-185 455-574 (632)
286 PF13189 Cytidylate_kin2: Cyti 97.5 0.00025 5.3E-09 73.4 7.2 160 64-226 1-178 (179)
287 COG0703 AroK Shikimate kinase 97.5 0.00026 5.6E-09 72.4 7.0 35 520-554 5-39 (172)
288 PRK10078 ribose 1,5-bisphospho 97.5 0.00022 4.7E-09 74.1 6.7 124 519-650 4-132 (186)
289 PRK00889 adenylylsulfate kinas 97.5 0.00059 1.3E-08 69.9 9.7 37 516-552 3-44 (175)
290 PLN02199 shikimate kinase 97.4 0.00052 1.1E-08 75.9 9.6 37 518-554 103-139 (303)
291 PLN02459 probable adenylate ki 97.4 0.00054 1.2E-08 74.8 9.5 122 516-650 28-154 (261)
292 KOG3347 Predicted nucleotide k 97.4 0.00058 1.3E-08 67.7 8.7 103 519-651 9-115 (176)
293 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00024 5.2E-09 77.2 6.8 33 519-551 1-38 (249)
294 COG1703 ArgK Putative periplas 97.4 0.0008 1.7E-08 73.8 10.5 118 50-178 39-174 (323)
295 TIGR01663 PNK-3'Pase polynucle 97.4 0.00057 1.2E-08 81.7 10.2 96 59-191 366-470 (526)
296 KOG3354 Gluconate kinase [Carb 97.4 0.00016 3.5E-09 71.8 4.7 46 515-560 10-55 (191)
297 PRK09825 idnK D-gluconate kina 97.4 0.001 2.3E-08 68.6 10.6 36 519-554 5-40 (176)
298 PRK11545 gntK gluconate kinase 97.4 0.0008 1.7E-08 68.5 9.6 30 68-97 1-30 (163)
299 TIGR00041 DTMP_kinase thymidyl 97.4 0.0014 3E-08 68.1 11.5 26 517-542 3-28 (195)
300 COG3265 GntK Gluconate kinase 97.4 0.00071 1.5E-08 67.1 8.5 42 524-565 2-43 (161)
301 PF06414 Zeta_toxin: Zeta toxi 97.3 0.0005 1.1E-08 72.2 7.9 41 513-553 11-54 (199)
302 cd01673 dNK Deoxyribonucleosid 97.3 0.00018 3.8E-09 74.8 4.5 48 628-677 124-171 (193)
303 PRK05537 bifunctional sulfate 97.3 0.0008 1.7E-08 81.5 10.6 62 487-552 365-433 (568)
304 COG2074 2-phosphoglycerate kin 97.3 0.00071 1.5E-08 72.4 8.8 39 58-96 85-124 (299)
305 PHA00729 NTP-binding motif con 97.3 0.0015 3.2E-08 69.9 11.4 106 515-649 15-139 (226)
306 PF13189 Cytidylate_kin2: Cyti 97.3 0.00013 2.8E-09 75.5 3.1 130 519-651 1-136 (179)
307 PRK14526 adenylate kinase; Pro 97.3 0.00087 1.9E-08 71.3 9.2 35 520-554 3-37 (211)
308 PRK14738 gmk guanylate kinase; 97.3 0.0013 2.8E-08 69.6 10.4 27 59-85 10-36 (206)
309 PF07931 CPT: Chloramphenicol 97.3 0.00081 1.8E-08 69.3 8.4 37 518-554 2-40 (174)
310 COG0529 CysC Adenylylsulfate k 97.3 0.0009 2E-08 68.2 8.4 41 513-553 19-64 (197)
311 COG0194 Gmk Guanylate kinase [ 97.3 0.0018 4E-08 66.8 10.7 122 516-650 3-135 (191)
312 PRK04220 2-phosphoglycerate ki 97.3 0.00026 5.7E-09 78.6 4.9 39 514-552 89-128 (301)
313 PF00406 ADK: Adenylate kinase 97.3 0.00032 7E-09 70.1 5.2 112 522-648 1-122 (151)
314 PRK14529 adenylate kinase; Pro 97.3 0.001 2.3E-08 71.2 9.2 116 520-651 3-128 (223)
315 PRK00091 miaA tRNA delta(2)-is 97.3 0.00025 5.3E-09 79.5 4.6 39 516-554 3-43 (307)
316 TIGR00455 apsK adenylylsulfate 97.3 0.0017 3.6E-08 67.2 10.4 40 513-552 14-58 (184)
317 cd02027 APSK Adenosine 5'-phos 97.2 0.00062 1.4E-08 68.3 6.9 34 519-552 1-39 (149)
318 cd07761 CYTH-like_CthTTM-like 97.2 0.0016 3.5E-08 65.3 9.7 81 750-836 33-116 (146)
319 PF03668 ATP_bind_2: P-loop AT 97.2 0.0013 2.7E-08 72.4 9.6 131 62-229 1-142 (284)
320 PRK13951 bifunctional shikimat 97.2 0.00072 1.6E-08 80.5 7.8 35 64-98 2-36 (488)
321 TIGR03575 selen_PSTK_euk L-ser 97.2 0.00045 9.7E-09 78.3 5.8 35 520-554 2-42 (340)
322 COG2019 AdkA Archaeal adenylat 97.2 0.0014 3E-08 66.3 8.4 38 61-98 3-41 (189)
323 COG0645 Predicted kinase [Gene 97.2 0.0019 4.1E-08 65.6 9.5 111 63-191 2-126 (170)
324 PRK12337 2-phosphoglycerate ki 97.2 0.00079 1.7E-08 78.6 7.4 39 60-98 253-292 (475)
325 smart00072 GuKc Guanylate kina 97.2 0.0023 4.9E-08 66.4 10.2 122 518-648 3-133 (184)
326 PRK13975 thymidylate kinase; P 97.1 0.0026 5.6E-08 66.1 10.4 27 518-544 3-29 (196)
327 PRK14021 bifunctional shikimat 97.1 0.00066 1.4E-08 82.0 6.6 38 517-554 6-43 (542)
328 PLN02842 nucleotide kinase 97.1 0.00072 1.6E-08 79.9 6.7 115 522-650 2-122 (505)
329 COG4639 Predicted kinase [Gene 97.1 0.0011 2.5E-08 66.2 6.5 102 62-190 2-118 (168)
330 PRK05416 glmZ(sRNA)-inactivati 97.1 0.0016 3.5E-08 72.4 8.4 29 516-545 5-33 (288)
331 PF01202 SKI: Shikimate kinase 97.0 0.00039 8.4E-09 70.3 3.1 29 526-554 1-29 (158)
332 TIGR01663 PNK-3'Pase polynucle 97.0 0.0012 2.6E-08 79.0 7.4 38 514-551 366-403 (526)
333 PRK13973 thymidylate kinase; P 97.0 0.0041 8.9E-08 66.1 10.6 31 63-93 4-37 (213)
334 PLN02840 tRNA dimethylallyltra 97.0 0.00058 1.3E-08 79.1 4.4 38 514-551 18-55 (421)
335 KOG0635 Adenosine 5'-phosphosu 97.0 0.0027 5.9E-08 62.9 7.9 51 60-110 29-84 (207)
336 cd07756 CYTH-like_Pase_CHAD Un 96.9 0.0023 5E-08 67.4 7.8 117 727-847 32-177 (197)
337 PF00625 Guanylate_kin: Guanyl 96.9 0.0024 5.2E-08 66.0 7.9 124 518-649 3-134 (183)
338 PLN02165 adenylate isopentenyl 96.9 0.00075 1.6E-08 76.0 4.3 36 516-551 42-77 (334)
339 PF03308 ArgK: ArgK protein; 96.9 0.00089 1.9E-08 72.5 4.7 45 505-549 17-66 (266)
340 KOG3877 NADH:ubiquinone oxidor 96.9 0.0035 7.5E-08 67.7 8.9 38 61-98 70-110 (393)
341 PRK11545 gntK gluconate kinase 96.9 0.0059 1.3E-07 62.2 10.2 31 523-553 1-31 (163)
342 PRK09435 membrane ATPase/prote 96.9 0.0011 2.5E-08 75.0 5.4 39 513-551 52-95 (332)
343 PRK07933 thymidylate kinase; V 96.8 0.0083 1.8E-07 63.9 10.9 45 168-212 132-183 (213)
344 PRK14738 gmk guanylate kinase; 96.8 0.0035 7.6E-08 66.3 8.0 28 513-540 9-36 (206)
345 COG1703 ArgK Putative periplas 96.8 0.0015 3.3E-08 71.7 5.1 122 503-639 37-175 (323)
346 cd07374 CYTH-like_Pase CYTH-li 96.8 0.0035 7.5E-08 64.4 7.5 97 729-832 33-153 (174)
347 COG0378 HypB Ni2+-binding GTPa 96.7 0.0062 1.4E-07 63.3 8.8 41 514-554 9-54 (202)
348 PLN02748 tRNA dimethylallyltra 96.7 0.0013 2.7E-08 77.6 4.2 40 515-554 20-61 (468)
349 PF00004 AAA: ATPase family as 96.7 0.0017 3.7E-08 62.3 4.4 32 65-96 1-32 (132)
350 PRK13951 bifunctional shikimat 96.7 0.0022 4.8E-08 76.4 6.1 36 519-554 2-37 (488)
351 PF08433 KTI12: Chromatin asso 96.7 0.0024 5.3E-08 70.4 5.8 104 519-650 3-120 (270)
352 TIGR00174 miaA tRNA isopenteny 96.7 0.0012 2.6E-08 73.3 3.3 36 519-554 1-38 (287)
353 PLN02924 thymidylate kinase 96.7 0.0085 1.8E-07 64.2 9.7 28 60-87 14-41 (220)
354 PF00004 AAA: ATPase family as 96.6 0.0015 3.3E-08 62.6 3.6 33 520-552 1-33 (132)
355 KOG3877 NADH:ubiquinone oxidor 96.6 0.002 4.4E-08 69.4 4.8 39 516-554 70-111 (393)
356 COG4639 Predicted kinase [Gene 96.6 0.0028 6.1E-08 63.5 5.4 36 517-554 2-37 (168)
357 PRK09435 membrane ATPase/prote 96.6 0.0029 6.4E-08 71.6 6.3 40 56-95 50-94 (332)
358 PF01745 IPT: Isopentenyl tran 96.6 0.0025 5.4E-08 67.2 5.2 40 62-101 1-42 (233)
359 PF00448 SRP54: SRP54-type pro 96.6 0.0017 3.6E-08 68.4 3.6 38 517-554 1-43 (196)
360 PRK13973 thymidylate kinase; P 96.5 0.0066 1.4E-07 64.5 8.0 32 517-548 3-37 (213)
361 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0038 8.1E-08 71.1 6.1 47 41-87 56-103 (361)
362 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0057 1.2E-07 60.3 6.5 37 60-96 20-57 (133)
363 PF13521 AAA_28: AAA domain; P 96.4 0.0029 6.2E-08 64.1 3.7 32 64-98 1-32 (163)
364 PLN02772 guanylate kinase 96.3 0.021 4.5E-07 65.8 10.6 26 61-86 134-159 (398)
365 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0064 1.4E-07 69.3 6.1 47 496-542 56-103 (361)
366 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0075 1.6E-07 59.5 5.4 37 515-551 20-57 (133)
367 COG0324 MiaA tRNA delta(2)-iso 96.2 0.0042 9.2E-08 69.3 4.0 39 516-554 2-42 (308)
368 PF02367 UPF0079: Uncharacteri 96.2 0.0079 1.7E-07 58.5 5.4 30 59-88 12-41 (123)
369 PF00448 SRP54: SRP54-type pro 96.1 0.0046 9.9E-08 65.1 3.9 38 62-99 1-43 (196)
370 PF03668 ATP_bind_2: P-loop AT 96.1 0.012 2.6E-07 64.8 6.8 56 631-690 84-140 (284)
371 COG1660 Predicted P-loop-conta 96.1 0.038 8.1E-07 59.8 10.2 59 171-229 85-143 (286)
372 PF13521 AAA_28: AAA domain; P 96.0 0.0045 9.7E-08 62.6 3.2 32 520-554 2-33 (163)
373 PRK10751 molybdopterin-guanine 96.0 0.0058 1.2E-07 63.0 4.0 28 515-542 4-31 (173)
374 PRK12337 2-phosphoglycerate ki 96.0 0.0057 1.2E-07 71.6 4.2 39 515-553 253-292 (475)
375 COG3025 Uncharacterized conser 96.0 0.0075 1.6E-07 69.1 4.9 118 256-381 33-180 (432)
376 KOG0744 AAA+-type ATPase [Post 96.0 0.019 4.2E-07 63.6 7.7 35 63-99 178-212 (423)
377 TIGR01425 SRP54_euk signal rec 96.0 0.0071 1.5E-07 70.6 4.7 38 515-552 98-140 (429)
378 KOG3062 RNA polymerase II elon 95.9 0.046 1E-06 57.9 10.0 108 62-191 1-124 (281)
379 PHA03132 thymidine kinase; Pro 95.9 0.056 1.2E-06 65.2 12.2 31 62-92 257-287 (580)
380 PRK13974 thymidylate kinase; P 95.9 0.032 7E-07 59.2 9.2 45 168-212 134-179 (212)
381 COG4619 ABC-type uncharacteriz 95.9 0.009 2E-07 60.7 4.4 48 64-120 31-81 (223)
382 PRK14729 miaA tRNA delta(2)-is 95.9 0.0065 1.4E-07 67.9 3.8 37 517-554 4-42 (300)
383 cd01672 TMPK Thymidine monopho 95.9 0.0068 1.5E-07 62.5 3.6 24 518-541 1-24 (200)
384 COG1618 Predicted nucleotide k 95.8 0.0079 1.7E-07 60.7 3.8 39 516-554 4-42 (179)
385 smart00382 AAA ATPases associa 95.8 0.0071 1.5E-07 57.2 3.4 25 518-542 3-27 (148)
386 TIGR03499 FlhF flagellar biosy 95.8 0.016 3.4E-07 64.5 6.6 38 61-98 193-237 (282)
387 TIGR03499 FlhF flagellar biosy 95.8 0.0082 1.8E-07 66.7 4.3 38 516-553 193-237 (282)
388 TIGR00750 lao LAO/AO transport 95.8 0.01 2.3E-07 66.4 5.2 46 52-97 24-74 (300)
389 COG4088 Predicted nucleotide k 95.8 0.0064 1.4E-07 63.5 3.2 32 518-549 2-36 (261)
390 COG4619 ABC-type uncharacteriz 95.8 0.0068 1.5E-07 61.6 3.2 22 519-540 31-52 (223)
391 PRK10751 molybdopterin-guanine 95.8 0.0089 1.9E-07 61.6 4.2 29 59-87 3-31 (173)
392 COG0125 Tmk Thymidylate kinase 95.8 0.044 9.5E-07 58.2 9.4 59 168-227 127-188 (208)
393 PRK06761 hypothetical protein; 95.8 0.012 2.6E-07 65.2 5.4 33 518-550 4-36 (282)
394 COG2074 2-phosphoglycerate kin 95.8 0.0087 1.9E-07 64.3 4.1 39 513-551 85-124 (299)
395 smart00382 AAA ATPases associa 95.8 0.0095 2.1E-07 56.3 4.0 26 63-88 3-28 (148)
396 PF03215 Rad17: Rad17 cell cyc 95.8 0.016 3.6E-07 69.4 6.8 50 44-93 27-76 (519)
397 PRK05800 cobU adenosylcobinami 95.7 0.0094 2E-07 61.3 4.0 29 63-91 2-30 (170)
398 PRK13976 thymidylate kinase; P 95.7 0.039 8.4E-07 58.7 8.8 25 63-87 1-25 (209)
399 TIGR00064 ftsY signal recognit 95.7 0.012 2.7E-07 65.0 5.2 40 59-98 69-113 (272)
400 TIGR00750 lao LAO/AO transport 95.7 0.0099 2.1E-07 66.6 4.5 41 512-552 29-74 (300)
401 COG1618 Predicted nucleotide k 95.7 0.01 2.2E-07 60.0 4.0 27 61-87 4-30 (179)
402 TIGR00101 ureG urease accessor 95.7 0.01 2.2E-07 62.6 4.3 36 517-552 1-40 (199)
403 PLN00020 ribulose bisphosphate 95.7 0.018 4E-07 65.5 6.5 36 514-549 145-180 (413)
404 COG1855 ATPase (PilT family) [ 95.7 0.018 3.9E-07 66.2 6.2 22 520-541 266-287 (604)
405 PF02367 UPF0079: Uncharacteri 95.7 0.014 3E-07 56.9 4.6 29 515-543 13-41 (123)
406 PRK06761 hypothetical protein; 95.6 0.019 4E-07 63.8 6.1 34 63-96 4-37 (282)
407 PRK05506 bifunctional sulfate 95.6 0.033 7.1E-07 68.9 8.9 40 514-553 457-501 (632)
408 PRK10416 signal recognition pa 95.6 0.023 4.9E-07 64.3 6.7 38 60-97 112-154 (318)
409 PRK10646 ADP-binding protein; 95.6 0.028 6.2E-07 56.7 6.6 29 60-88 26-54 (153)
410 PRK00698 tmk thymidylate kinas 95.6 0.011 2.4E-07 61.7 3.8 25 517-541 3-27 (205)
411 TIGR00064 ftsY signal recognit 95.6 0.012 2.5E-07 65.2 4.2 40 514-553 69-113 (272)
412 PHA02575 1 deoxynucleoside mon 95.6 0.011 2.4E-07 63.1 3.8 32 63-95 1-33 (227)
413 COG2954 Uncharacterized protei 95.5 0.024 5.2E-07 55.5 5.6 91 284-380 40-132 (156)
414 PF03029 ATP_bind_1: Conserved 95.5 0.0075 1.6E-07 65.4 2.4 28 522-549 1-33 (238)
415 PRK08099 bifunctional DNA-bind 95.5 0.014 3E-07 68.1 4.6 34 59-92 216-249 (399)
416 PRK10416 signal recognition pa 95.5 0.013 2.7E-07 66.3 4.1 38 515-552 112-154 (318)
417 cd00009 AAA The AAA+ (ATPases 95.5 0.028 6.1E-07 53.8 6.0 26 61-86 18-43 (151)
418 PRK05800 cobU adenosylcobinami 95.4 0.013 2.8E-07 60.3 3.6 26 519-544 3-28 (170)
419 cd00071 GMPK Guanosine monopho 95.4 0.0097 2.1E-07 58.9 2.6 24 519-542 1-24 (137)
420 PRK08903 DnaA regulatory inact 95.4 0.028 6.2E-07 60.0 6.4 51 46-96 26-81 (227)
421 PF02223 Thymidylate_kin: Thym 95.4 0.05 1.1E-06 56.2 8.0 57 168-226 118-176 (186)
422 TIGR01425 SRP54_euk signal rec 95.3 0.016 3.6E-07 67.6 4.6 39 60-98 98-141 (429)
423 PRK14974 cell division protein 95.3 0.015 3.1E-07 66.2 4.1 38 514-551 137-179 (336)
424 PF01745 IPT: Isopentenyl tran 95.3 0.016 3.5E-07 61.2 4.0 34 518-551 2-35 (233)
425 COG0378 HypB Ni2+-binding GTPa 95.3 0.022 4.9E-07 59.3 5.0 37 62-98 13-53 (202)
426 cd00071 GMPK Guanosine monopho 95.3 0.012 2.6E-07 58.2 2.9 24 64-87 1-24 (137)
427 PRK11889 flhF flagellar biosyn 95.3 0.016 3.5E-07 66.8 4.2 38 515-552 239-281 (436)
428 cd00009 AAA The AAA+ (ATPases 95.3 0.023 5.1E-07 54.3 4.8 25 517-541 19-43 (151)
429 TIGR01241 FtsH_fam ATP-depende 95.3 0.051 1.1E-06 65.2 8.8 34 61-94 87-120 (495)
430 cd03115 SRP The signal recogni 95.3 0.014 3E-07 59.6 3.4 34 519-552 2-40 (173)
431 PF07728 AAA_5: AAA domain (dy 95.2 0.021 4.4E-07 56.0 4.2 26 65-90 2-27 (139)
432 PRK10867 signal recognition pa 95.2 0.019 4.1E-07 67.4 4.5 38 515-552 98-141 (433)
433 PRK11889 flhF flagellar biosyn 95.2 0.027 5.9E-07 64.9 5.6 38 60-97 239-281 (436)
434 cd03115 SRP The signal recogni 95.2 0.02 4.3E-07 58.5 4.1 35 64-98 2-41 (173)
435 PLN00020 ribulose bisphosphate 95.2 0.032 6.9E-07 63.7 6.0 37 59-95 145-181 (413)
436 COG3709 Uncharacterized compon 95.1 0.17 3.7E-06 51.3 10.4 131 63-204 6-147 (192)
437 PF03029 ATP_bind_1: Conserved 95.1 0.014 3.1E-07 63.3 3.1 29 67-95 1-34 (238)
438 COG1124 DppF ABC-type dipeptid 95.1 0.014 3.1E-07 62.6 2.9 24 518-541 34-57 (252)
439 PRK14974 cell division protein 95.1 0.021 4.6E-07 64.9 4.5 40 59-98 137-181 (336)
440 TIGR00959 ffh signal recogniti 95.1 0.02 4.4E-07 67.1 4.5 38 515-552 97-140 (428)
441 COG0125 Tmk Thymidylate kinase 95.1 0.059 1.3E-06 57.3 7.5 61 628-689 127-187 (208)
442 PRK08099 bifunctional DNA-bind 95.1 0.018 4E-07 67.0 4.1 32 514-545 216-247 (399)
443 cd01983 Fer4_NifH The Fer4_Nif 95.1 0.1 2.2E-06 46.6 8.1 31 64-94 1-34 (99)
444 cd00820 PEPCK_HprK Phosphoenol 95.1 0.016 3.5E-07 55.0 2.9 33 517-551 15-47 (107)
445 PRK08903 DnaA regulatory inact 95.0 0.035 7.5E-07 59.3 5.8 46 506-551 31-81 (227)
446 TIGR00101 ureG urease accessor 95.0 0.029 6.2E-07 59.2 4.9 35 62-96 1-39 (199)
447 PF05496 RuvB_N: Holliday junc 95.0 0.048 1E-06 58.3 6.6 52 40-91 22-79 (233)
448 COG0802 Predicted ATPase or ki 95.0 0.051 1.1E-06 54.4 6.4 30 58-87 21-50 (149)
449 PRK12724 flagellar biosynthesi 95.0 0.033 7.2E-07 64.8 5.8 38 61-98 222-265 (432)
450 PF06309 Torsin: Torsin; Inte 95.0 0.078 1.7E-06 51.8 7.3 41 46-86 35-77 (127)
451 COG0645 Predicted kinase [Gene 95.0 0.02 4.4E-07 58.3 3.4 37 518-554 2-38 (170)
452 PF13173 AAA_14: AAA domain 95.0 0.026 5.6E-07 54.9 4.1 36 518-553 3-42 (128)
453 COG1124 DppF ABC-type dipeptid 94.9 0.018 3.9E-07 61.8 3.2 24 63-86 34-57 (252)
454 PHA02575 1 deoxynucleoside mon 94.9 0.019 4.1E-07 61.3 3.3 35 518-553 1-36 (227)
455 PRK12724 flagellar biosynthesi 94.9 0.019 4.1E-07 66.8 3.5 37 516-552 222-264 (432)
456 COG1126 GlnQ ABC-type polar am 94.9 0.017 3.7E-07 61.1 2.9 22 518-539 29-50 (240)
457 PRK12723 flagellar biosynthesi 94.9 0.054 1.2E-06 62.8 7.1 39 60-98 172-219 (388)
458 PF13555 AAA_29: P-loop contai 94.9 0.027 5.8E-07 48.2 3.4 23 519-541 25-47 (62)
459 PRK10646 ADP-binding protein; 94.9 0.039 8.5E-07 55.7 5.2 29 515-543 26-54 (153)
460 COG1136 SalX ABC-type antimicr 94.9 0.019 4E-07 61.6 3.0 24 518-541 32-55 (226)
461 PRK00771 signal recognition pa 94.9 0.022 4.9E-07 66.9 4.0 37 515-551 93-134 (437)
462 PF07728 AAA_5: AAA domain (dy 94.9 0.023 4.9E-07 55.7 3.4 26 520-545 2-27 (139)
463 TIGR00390 hslU ATP-dependent p 94.9 0.027 6E-07 65.3 4.6 34 62-95 47-80 (441)
464 cd00820 PEPCK_HprK Phosphoenol 94.9 0.026 5.5E-07 53.7 3.6 33 62-96 15-47 (107)
465 cd01131 PilT Pilus retraction 94.8 0.021 4.7E-07 60.0 3.4 24 519-542 3-26 (198)
466 COG0802 Predicted ATPase or ki 94.8 0.043 9.4E-07 54.9 5.3 30 513-542 21-50 (149)
467 PRK12726 flagellar biosynthesi 94.8 0.026 5.7E-07 64.8 4.2 39 515-553 204-247 (407)
468 PRK12723 flagellar biosynthesi 94.8 0.026 5.6E-07 65.4 4.2 39 515-553 172-219 (388)
469 PRK05201 hslU ATP-dependent pr 94.8 0.026 5.6E-07 65.6 4.1 34 62-95 50-83 (443)
470 PF03205 MobB: Molybdopterin g 94.8 0.023 5E-07 56.6 3.2 23 519-541 2-24 (140)
471 CHL00195 ycf46 Ycf46; Provisio 94.7 0.063 1.4E-06 64.1 7.3 36 60-95 257-292 (489)
472 cd03116 MobB Molybdenum is an 94.7 0.03 6.5E-07 57.0 3.9 25 62-86 1-25 (159)
473 PF03215 Rad17: Rad17 cell cyc 94.7 0.049 1.1E-06 65.5 6.2 32 515-546 43-74 (519)
474 PRK09087 hypothetical protein; 94.6 0.023 5E-07 61.1 3.1 35 519-553 46-80 (226)
475 PRK14490 putative bifunctional 94.6 0.026 5.6E-07 65.2 3.7 28 515-542 3-30 (369)
476 TIGR00635 ruvB Holliday juncti 94.6 0.064 1.4E-06 59.8 6.8 32 59-90 27-58 (305)
477 PF13555 AAA_29: P-loop contai 94.6 0.037 8.1E-07 47.3 3.7 23 64-86 25-47 (62)
478 PRK14961 DNA polymerase III su 94.6 0.061 1.3E-06 62.0 6.7 50 40-89 14-65 (363)
479 cd03116 MobB Molybdenum is an 94.6 0.03 6.5E-07 57.0 3.7 24 518-541 2-25 (159)
480 PRK10867 signal recognition pa 94.6 0.041 8.9E-07 64.6 5.3 39 60-98 98-142 (433)
481 PRK13768 GTPase; Provisional 94.6 0.036 7.7E-07 60.7 4.5 34 62-95 2-40 (253)
482 PF07724 AAA_2: AAA domain (Cd 94.5 0.048 1E-06 56.2 5.0 37 62-98 3-45 (171)
483 COG1855 ATPase (PilT family) [ 94.5 0.03 6.4E-07 64.5 3.7 22 65-86 266-287 (604)
484 COG1126 GlnQ ABC-type polar am 94.5 0.027 5.8E-07 59.6 3.1 23 62-84 28-50 (240)
485 PF02223 Thymidylate_kin: Thym 94.5 0.034 7.4E-07 57.4 3.9 48 628-676 118-165 (186)
486 TIGR01526 nadR_NMN_Atrans nico 94.5 0.037 8E-07 62.8 4.5 30 62-91 162-191 (325)
487 PRK00080 ruvB Holliday junctio 94.5 0.067 1.4E-06 60.7 6.6 33 59-91 48-80 (328)
488 PHA02544 44 clamp loader, smal 94.5 0.061 1.3E-06 60.3 6.2 39 506-544 32-70 (316)
489 PF05496 RuvB_N: Holliday junc 94.5 0.045 9.7E-07 58.6 4.7 28 518-545 51-78 (233)
490 PRK00771 signal recognition pa 94.5 0.064 1.4E-06 63.2 6.5 38 60-97 93-135 (437)
491 PF13173 AAA_14: AAA domain 94.5 0.046 1E-06 53.1 4.5 35 62-96 2-40 (128)
492 PRK13768 GTPase; Provisional 94.5 0.036 7.8E-07 60.6 4.1 33 517-549 2-39 (253)
493 PHA02624 large T antigen; Prov 94.4 0.078 1.7E-06 64.0 7.1 46 48-93 417-462 (647)
494 KOG0744 AAA+-type ATPase [Post 94.4 0.03 6.6E-07 62.1 3.4 36 517-554 177-212 (423)
495 COG1763 MobB Molybdopterin-gua 94.4 0.028 6.1E-07 57.2 3.0 25 517-541 2-26 (161)
496 cd01918 HprK_C HprK/P, the bif 94.4 0.046 9.9E-07 55.1 4.4 33 63-96 15-47 (149)
497 PRK05201 hslU ATP-dependent pr 94.4 0.032 7E-07 64.8 3.7 34 517-550 50-83 (443)
498 cd01131 PilT Pilus retraction 94.4 0.035 7.5E-07 58.4 3.6 24 64-87 3-26 (198)
499 TIGR00176 mobB molybdopterin-g 94.3 0.03 6.5E-07 56.7 2.9 23 519-541 1-23 (155)
500 COG1136 SalX ABC-type antimicr 94.3 0.032 7E-07 59.8 3.3 23 63-85 32-54 (226)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=6.9e-76 Score=675.77 Aligned_cols=383 Identities=33% Similarity=0.624 Sum_probs=357.0
Q ss_pred ccceecccCCCCccchhhhHHHHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-CCceeccccccchhhhccc
Q 002197 482 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKDF 560 (954)
Q Consensus 482 ~~~~~~~~~~~~l~~~e~~~~~i~~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~L-g~~vIs~Ddfy~~~~~~~~ 560 (954)
.++++++|+|++++|++||++++++++.+..+.+++++|||+||+||||||||+.|+..+ ++.+|++|+|+.......+
T Consensus 30 ~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~ 109 (656)
T PLN02318 30 SDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDG 109 (656)
T ss_pred CCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCc
Confidence 478999999999999999999999999999888889999999999999999999999988 4679999999876544567
Q ss_pred cCCCCCcccHHHHHHHHHHHHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChh
Q 002197 561 KYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVH 640 (954)
Q Consensus 561 n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d 640 (954)
+|++|.++|.+.+.++|..|++|+.+.+|.||+.++++.+... ....+.+|||+||+|++++.+++++|++|||++|.+
T Consensus 110 nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~-i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvD 188 (656)
T PLN02318 110 NFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRT-LEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (656)
T ss_pred cCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCce-eecCCCcEEEEechhhccHhHHhhCCEEEEEcCCcc
Confidence 8999999999999999999999999999999999998874322 334678999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccccccch--hhHHhhhcchhhhhcccccCcccEEEcCCCCCCCCccchhhhhccccchhhHHHhhcC
Q 002197 641 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL 718 (954)
Q Consensus 641 ~rl~Rri~RD~~~rg~~~~~--~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m 718 (954)
.++.||+.||..++|++.+. .+|...++|+|..||+|++++||++|.|.|+|+-..+++.+++++.+++.+|+|+..|
T Consensus 189 irL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L 268 (656)
T PLN02318 189 FDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVL 268 (656)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHh
Confidence 99999999999999998875 6888899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhhcccccccCCCCCCCCCcCCcceEEEEeeCCEEEEEeeccccccCcccccceeEEehhhHHHHHHHhCce
Q 002197 719 DPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQ 798 (954)
Q Consensus 719 ~~e~v~~fv~~y~~~Y~~~~~l~~~~~~~~~~~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~~~l~~lg~~ 798 (954)
+.+ .++.+++|+||||++|+.+. .++++|||||+|+|+|+|||++||+||+|||+|+++|||++++++|||+|||+
T Consensus 269 ~~~-~~~~~~~~~DiYl~~P~~d~---~~~~e~LRvR~~~Gk~~Ltyke~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~ 344 (656)
T PLN02318 269 SED-HTETTEETYDIYLLPPGEDP---ETCQSYLRMRNRDGKYSLMFEEWVTDEPFIISPRITFEVSVRLLGGLMALGYT 344 (656)
T ss_pred hhc-cccccceeeEEEecCCCCCc---hhccceEEEEecCCEEEEEEecccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence 864 77888999999999997653 35678999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeeEEeecCcEEEEEecccCCCCceEEEecccHHHHHHHHhhcCCCCCccchhHHHH-HHhhcccc
Q 002197 799 AVAYIEASAFIYQDGKILIEVDHLQDAPSPYLQIKGVDKEAVAAAGSTLKLDGSYTTKSYLQI-ILEKLPAV 869 (954)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~syle~-~~~~~~~~ 869 (954)
+++++||.|++|++|+++|++||||+||++|+||+|.+|+.|.++|++|||+|+|+|+||||| ++|||++.
T Consensus 345 ~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~i~~~~~~~~ 416 (656)
T PLN02318 345 IATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQIQLEKLVNE 416 (656)
T ss_pred eEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 68888764
No 2
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=1.1e-58 Score=533.81 Aligned_cols=363 Identities=32% Similarity=0.617 Sum_probs=322.7
Q ss_pred CCcccccCCcccchhhhHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEecccccccc----cc
Q 002197 28 SPSILQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----DE 102 (954)
Q Consensus 28 ~s~~~~~~~~~~s~d~~~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs~Dd~y~~~----~~ 102 (954)
..+++.++++.+|||++|+.++++++.+.++.+++++|||+|++||||||+|+.|+..+ ++.+|++|+|+... ..
T Consensus 31 ~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~n 110 (656)
T PLN02318 31 DRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGN 110 (656)
T ss_pred CceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCcc
Confidence 56778899999999999999999999999888889999999999999999999999988 46799999997531 12
Q ss_pred CCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHH
Q 002197 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFS 182 (954)
Q Consensus 103 ~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~r 182 (954)
.+.|..+|.+.+.+.|..++.|+.+.+|.||+..+.+........++.++||+||+|++++.+++++|++|||+++.+.+
T Consensus 111 fD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDir 190 (656)
T PLN02318 111 FDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFD 190 (656)
T ss_pred CCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCccHH
Confidence 45678899999999999999999999999999999887655556677899999999999999999999999999999999
Q ss_pred HHHHHHhccCCc-cCHHHHHH----hhchhhhhccCCCcCcccEEEECCCC--CchhhhhhhhcccCcCCCCCcccccc-
Q 002197 183 LISKVQYDIGDS-CSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFV--SSFREAIYKLKCRSEAPGACSISAFQ- 254 (954)
Q Consensus 183 l~Rri~RD~~~r-~~~e~~~~----~v~p~~~~~Iep~~~~ADiII~N~~~--~~~~~~~y~lk~~~~~l~g~~~~~~~- 254 (954)
+.||+.||...+ .+++.+++ .+.|+|.+||+|++++||+||+|+|+ +++..|+|+|++......++....+.
T Consensus 191 L~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~ 270 (656)
T PLN02318 191 LVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSE 270 (656)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhh
Confidence 999999998776 46665554 46999999999999999999999998 69999999999988754443322221
Q ss_pred ----cccccccceeccccCCCCcccccccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEeehhHHHHHHhcCCc
Q 002197 255 ----GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYS 330 (954)
Q Consensus 255 ----~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v~~~~~L~~LGf~ 330 (954)
.+..-+|+||+.|++||+.+++ |||||++++++.|||| +|+.+++|++.++.++||+|.+.++|++|||+
T Consensus 271 ~~~~~~~~~~DiYl~~P~~d~~~~~e-----~LRvR~~~Gk~~Ltyk-e~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~ 344 (656)
T PLN02318 271 DHTETTEETYDIYLLPPGEDPETCQS-----YLRMRNRDGKYSLMFE-EWVTDEPFIISPRITFEVSVRLLGGLMALGYT 344 (656)
T ss_pred ccccccceeeEEEecCCCCCchhccc-----eEEEEecCCEEEEEEe-cccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence 2234569999999999876655 5599999999999999 99999999999999999999999999999999
Q ss_pred eeEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEecChhHHHHHHHHcCCCCCccchhHHHHHHh
Q 002197 331 VVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLE 396 (954)
Q Consensus 331 ~~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~~~~~v~~~a~~Lgl~~~~~~~sYlel~l~ 396 (954)
+++.++|.|++|.+|+++|++|+|+|||.+||||||.+++.|.++|++|||+++++++|||||+..
T Consensus 345 ~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~i~~ 410 (656)
T PLN02318 345 IATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQIQL 410 (656)
T ss_pred eEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999954
No 3
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.6e-33 Score=289.95 Aligned_cols=176 Identities=32% Similarity=0.530 Sum_probs=160.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC---ceeccccccchhh------hccccCCCCCcccHHHHHHHHHHHHcCCc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC---EVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRR 585 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~---~vIs~Ddfy~~~~------~~~~n~d~p~t~D~~lL~~~L~~L~~g~~ 585 (954)
.++++|||+|+|||||||+|+.|.+.|+. .+|++||||+... ....||++|.++|+++|.++|..|++|++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 35699999999999999999999999984 4999999999732 35568999999999999999999999999
Q ss_pred eecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch--hh
Q 002197 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--ND 662 (954)
Q Consensus 586 v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~--~q 662 (954)
+..|.||+.+|.|.. +.....|.+|||+||+++++ +.+++++|++|||++|.|.|+.||+.||..+||++++. .|
T Consensus 86 v~~P~yd~~~~~r~~--~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~q 163 (218)
T COG0572 86 VDLPVYDYKTHTREP--ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQ 163 (218)
T ss_pred ccccccchhcccccC--CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999985 33345789999999999998 58999999999999999999999999999999999986 79
Q ss_pred HHhhhcchhhhhcccccCcccEEEcCCCCC
Q 002197 663 IMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (954)
Q Consensus 663 ~~~~v~p~~~~~Iep~~~~ADivI~n~~~~ 692 (954)
|.+.++|+|++||+|++++||++|+.....
T Consensus 164 y~~~vkp~~~~fIeptk~~ADiiip~~~~n 193 (218)
T COG0572 164 YVKTVRPMYEQFIEPTKKYADIIIPSGGKN 193 (218)
T ss_pred HHHhhChhhhhccCcccccceEEeecCCcc
Confidence 999999999999999999999999876533
No 4
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.7e-30 Score=259.61 Aligned_cols=141 Identities=23% Similarity=0.394 Sum_probs=131.4
Q ss_pred CcccccccccccccceeccccCCCCcccccccCCceeEe-eeCCeEEEEEcceeccCCCccccceeEEEeeh----hHHH
Q 002197 248 CSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR-QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLG 322 (954)
Q Consensus 248 ~~~~~~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR-~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~~~~ 322 (954)
+.++.+...+.|+|+||++|||||+.||+|+ ||| ..++++.+|||||+++..+ |+|+|+|+.| .+..
T Consensus 22 ~~~~~~~~~e~q~DiYf~~p~rdf~~tdeal-----RiR~~~~~~~~lTYKgp~ld~~~---k~r~E~E~~v~D~~~~~~ 93 (178)
T COG1437 22 SLGAKFIKEEEQEDIYFDHPCRDFADTDEAL-----RIRRINGGEVFLTYKGPKLDRES---KTREEIEIEVSDVEKALE 93 (178)
T ss_pred hccccccceeeeeeeeeecCCcchhcCccee-----EEEEecCCcEEEEEecccccccc---cceeeEEEEeCCHHHHHH
Confidence 4667889999999999999999999999999 999 6688999999999999998 9999999999 9999
Q ss_pred HHHhcCCceeEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEec--Ch-------hHHHHHHHHcCCCCC-ccchhHHH
Q 002197 323 GLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGP-WITKSYLE 392 (954)
Q Consensus 323 ~L~~LGf~~~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~--~~-------~~v~~~a~~Lgl~~~-~~~~sYle 392 (954)
+|++|||.++++|+|.|++|..++++||||.|+|||. |+|||.+ +. +.+.+++++||+..+ .+++||+|
T Consensus 94 il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYlE 172 (178)
T COG1437 94 ILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYLE 172 (178)
T ss_pred HHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHHH
Confidence 9999999999999999999999999999999999999 9999999 22 568999999999854 59999999
Q ss_pred HHHhh
Q 002197 393 MVLEK 397 (954)
Q Consensus 393 l~l~~ 397 (954)
|++.+
T Consensus 173 Ll~~~ 177 (178)
T COG1437 173 LLLEK 177 (178)
T ss_pred HHhcc
Confidence 99874
No 5
>PTZ00301 uridine kinase; Provisional
Probab=99.96 E-value=2.4e-29 Score=264.47 Aligned_cols=173 Identities=28% Similarity=0.463 Sum_probs=152.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh----C---Cceeccccccchhh------hccccCCCCCcccHHHHHHHHHHHHcC
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNG 583 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L----g---~~vIs~Ddfy~~~~------~~~~n~d~p~t~D~~lL~~~L~~L~~g 583 (954)
.++|||+|||||||||||+.|++.+ | +.++++|+||++.. ....+|++|.++|+++|.+.|..|++|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 5899999999999999999998766 2 45899999998732 234689999999999999999999999
Q ss_pred CceecccccccccccCCccceeeccCccEEEEEeeccc-chhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch--
Q 002197 584 RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-- 660 (954)
Q Consensus 584 ~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~-- 660 (954)
+.+.+|.||+..+++.. ... ...+.+|||+||+|++ .+.+++++|++|||+++.++++.||+.||..++|++.+.
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~-~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~ 160 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAV-TMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVI 160 (210)
T ss_pred CcccCCCcccccCCcCC-ceE-EeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHH
Confidence 99999999999998874 233 3456799999999998 489999999999999999999999999999999998875
Q ss_pred hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 661 ~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
.+|...+.|.+.+||+|++.+||+||++.-+
T Consensus 161 ~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~ 191 (210)
T PTZ00301 161 EQYEATVRPMYYAYVEPSKVYADIIVPSWKD 191 (210)
T ss_pred HHHHHhhcccHHHHcCccccCCcEEEcCCCc
Confidence 5688889999999999999999999976643
No 6
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=99.96 E-value=1.4e-29 Score=254.00 Aligned_cols=222 Identities=22% Similarity=0.336 Sum_probs=163.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh--------CCceeccccccchhhh----cccc--------CCCCCcccHHHHH
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV--------GCEVVSLESYFKSEQV----KDFK--------YDDFSSLDLSLLS 574 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L--------g~~vIs~Ddfy~~~~~----~~~n--------~d~p~t~D~~lL~ 574 (954)
+-|++||++||+||||||++-+|-..+ .+..+|.||||.+++. ++.| .+.+++||+.++.
T Consensus 29 ~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ 108 (282)
T KOG2878|consen 29 DVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLV 108 (282)
T ss_pred cCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHH
Confidence 349999999999999999999987655 2678999999999542 1211 3578999999999
Q ss_pred HHHHHHHcC----Cceecccccccc----cccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHH
Q 002197 575 KNISDIRNG----RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (954)
Q Consensus 575 ~~L~~L~~g----~~v~~P~yD~~~----~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr 646 (954)
++|..+.++ ..+.+|.||++. |||.+...|...+|.+++|+|||++++..+. +|..-.++.
T Consensus 109 evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~--~~~v~a~d~--------- 177 (282)
T KOG2878|consen 109 EVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLP--ADVVKAVDP--------- 177 (282)
T ss_pred HHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccc--hhheeccCc---------
Confidence 999998764 459999999996 7888888888888999999999999874331 111111110
Q ss_pred HhcCccccccccchhhHHhhhcchhhhhcccccCcccEEEcCCCCCCCCccchhhhhccccchhhHHHhhcCChhhhhhh
Q 002197 647 VQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSS 726 (954)
Q Consensus 647 i~RD~~~rg~~~~~~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m~~e~v~~f 726 (954)
+.-|....+.. .....+.+.++|...-...---|+++|.||+||||.|+ +++.+|||||||..|
T Consensus 178 l~Gdl~~VN~k------L~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~----------~~~~kGMsDEeV~~F 241 (282)
T KOG2878|consen 178 LQGDLEVVNKK------LEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALR----------QDGQKGMSDEEVNDF 241 (282)
T ss_pred ccccHHHHhhH------HHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHH----------HhhccCCCHHHHHHH
Confidence 01111112222 22333455555543211111225788999999999987 456689999999999
Q ss_pred hhhccccc-ccCCCCCCCCCcCCcceEEEEeeCCEEEE
Q 002197 727 AQNFIDMY-LRLPGIPTNGQLTESDCIRVRICEGRFAL 763 (954)
Q Consensus 727 v~~y~~~Y-~~~~~l~~~~~~~~~~~irir~~~~~~~l 763 (954)
|+||++.| +|++.+...+.+..-.||.|-.+++||-+
T Consensus 242 V~rYmP~Yk~YL~tl~~~~~lgs~~~L~i~iDenRyp~ 279 (282)
T KOG2878|consen 242 VSRYMPAYKAYLPTLYAEGPLGSDRVLAIDIDENRYPI 279 (282)
T ss_pred HHhhhhHHHhhhhhhhhcCCCCCCeEEEEeecCCcccc
Confidence 99999999 99999998777655569999999999865
No 7
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.95 E-value=1e-28 Score=257.11 Aligned_cols=172 Identities=31% Similarity=0.531 Sum_probs=144.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC---------Cceeccccccchhh--------hccccCCCCCcccHHHHHHHHHHHH
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVG---------CEVVSLESYFKSEQ--------VKDFKYDDFSSLDLSLLSKNISDIR 581 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg---------~~vIs~Ddfy~~~~--------~~~~n~d~p~t~D~~lL~~~L~~L~ 581 (954)
||||+|||||||||||+.|+..|+ ..++++|+||.+.. ...+++++|.++|++++.+.|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999996 24778999997622 1245789999999999999999999
Q ss_pred cCCceecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch
Q 002197 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (954)
Q Consensus 582 ~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~ 660 (954)
+|+.+..|.||+.++++.+ ......+.+|||+||+|+++ +.+++++|++||++++.++++.|++.||..++|++.+.
T Consensus 81 ~g~~i~~p~yd~~~~~~~~--~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~ 158 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP--WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEE 158 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE--EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH
T ss_pred CCCccccccccccccccee--eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCccee
Confidence 9999999999999998875 23334578999999999987 67999999999999999999999999999999999876
Q ss_pred -hhHHhhhcchhhhhcccccCcccEEEcCCCCC
Q 002197 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (954)
Q Consensus 661 -~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~ 692 (954)
.+.+..++|.|..||+|++++||+||++.-..
T Consensus 159 ~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~~~ 191 (194)
T PF00485_consen 159 VIAQYERVRPGYERYIEPQKERADIVIPSGPTN 191 (194)
T ss_dssp HHHHHHTHHHHHHHCTGGGGGG-SEEEESCTSS
T ss_pred EEEEeecCChhhhhheeccccccEEEECCCCCc
Confidence 23344899999999999999999999987543
No 8
>PLN02348 phosphoribulokinase
Probab=99.94 E-value=7.1e-27 Score=262.10 Aligned_cols=230 Identities=23% Similarity=0.341 Sum_probs=175.2
Q ss_pred HHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC--------------------Cceeccccccchhhh----ccccCCCC
Q 002197 510 LLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG--------------------CEVVSLESYFKSEQV----KDFKYDDF 565 (954)
Q Consensus 510 l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg--------------------~~vIs~Ddfy~~~~~----~~~n~d~p 565 (954)
...+.++|++|||+|+|||||||||+.|++.|+ +.+|+|||||+.... ...+..+|
T Consensus 42 ~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP 121 (395)
T PLN02348 42 ALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP 121 (395)
T ss_pred hhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCc
Confidence 334567899999999999999999999999985 358999999874221 12345679
Q ss_pred CcccHHHHHHHHHHHHcCCceecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHH
Q 002197 566 SSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLI 644 (954)
Q Consensus 566 ~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~ 644 (954)
.++|++++.+.|..|++|+.+..|.||+.++...+. ....+.+||||||+|+++ +.+++++|++|||+++.+.++.
T Consensus 122 ~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~---e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~ 198 (395)
T PLN02348 122 RANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP---ELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFA 198 (395)
T ss_pred ccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc---EEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHH
Confidence 999999999999999999999999999999976642 234678999999999987 5789999999999999999999
Q ss_pred HHHhcCccccccccch-hhHHhhhcchhhhhcccccCcccEEEcCCCCCCCCc-cchhhhhccccchhhHHHhhcCChhh
Q 002197 645 SRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSP-ESSLFVLKSNKQVAYQDILKILDPAK 722 (954)
Q Consensus 645 Rri~RD~~~rg~~~~~-~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl~q-e~~~~~~k~~~~~~~~~~~~~m~~e~ 722 (954)
|+++||..++|.+.+. .+.+..+.|.|.+||+|.+.+||+||+-- ...+.+ +..-..++-. -.|
T Consensus 199 RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~-p~~l~~~~~~~~~l~vr---------li~---- 264 (395)
T PLN02348 199 WKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL-PTQLIPDDNEGKVLRVR---------LIM---- 264 (395)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec-CCcCCCCCCCCceEEEE---------EEe----
Confidence 9999999999998875 45566789999999999999999998543 343433 1111111111 122
Q ss_pred hhhhhhhcccccccCCCC-----CCCCCcCCc-ceEEEEee
Q 002197 723 FCSSAQNFIDMYLRLPGI-----PTNGQLTES-DCIRVRIC 757 (954)
Q Consensus 723 v~~fv~~y~~~Y~~~~~l-----~~~~~~~~~-~~irir~~ 757 (954)
++-+..|-+.||..+|- |....++++ +.|++...
T Consensus 265 -~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (395)
T PLN02348 265 -KEGVKNFDPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYG 304 (395)
T ss_pred -cCCCCCCCcceeeccCCccccccccccccCCCCCeEEEee
Confidence 23456777899877753 233345454 36665543
No 9
>PRK05439 pantothenate kinase; Provisional
Probab=99.94 E-value=3.7e-27 Score=259.88 Aligned_cols=240 Identities=19% Similarity=0.246 Sum_probs=175.5
Q ss_pred cccccccceecccCCCcCCCc--cccCCCcccceecccCCCCc-cchhhhHHHHHHHHHH-------HH--cCCCCEEEe
Q 002197 454 MEPVLATWHFISSDPSHAGSS--VIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQAL-------LE--NKGLPVIVG 521 (954)
Q Consensus 454 ~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~e~~~~~i~~i~~l-------~~--~~~~p~iIG 521 (954)
......+|+.+..+.+.+|++ +....++++.+.+..+.+-| ++.+.+.+++...+.+ .. ..+.|++||
T Consensus 11 ~~~~r~~w~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~iIg 90 (311)
T PRK05439 11 LEFSREQWAALRDSTPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFIIG 90 (311)
T ss_pred eeECHHHHHHHHhcCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEEEE
Confidence 357889999666666666665 34444555555443333333 3333333333222222 11 456899999
Q ss_pred eeCCCCccHHHHHHHHHHHhC-------Cceeccccccchhhh----ccc-cCCCCCcccHHHHHHHHHHHHcCCc-eec
Q 002197 522 IGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNGRR-TKV 588 (954)
Q Consensus 522 IsGpsGSGKTTlA~~La~~Lg-------~~vIs~Ddfy~~~~~----~~~-n~d~p~t~D~~lL~~~L~~L~~g~~-v~~ 588 (954)
|+|++||||||+|+.|+..++ +.+|++||||++... ... +++.|+++|+++|.++|..|++|+. +.+
T Consensus 91 IaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~~ 170 (311)
T PRK05439 91 IAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVTA 170 (311)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEEe
Confidence 999999999999999998763 679999999998432 112 3678999999999999999999997 999
Q ss_pred ccccccccccCCccceeeccCccEEEEEeecccc-hh------hhhcCCeEEEEEcChhHHHHHHHhcCcccc-------
Q 002197 589 PIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE------IRKSLDLWIAVVGGVHSHLISRVQRDKSRM------- 654 (954)
Q Consensus 589 P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~------l~~~~D~~I~v~~~~d~rl~Rri~RD~~~r------- 654 (954)
|.||+.++++.+. ......+.+||||||++++. +. +++++|++|||+++.+....|++.|....+
T Consensus 171 P~Yd~~~~d~~~~-~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp 249 (311)
T PRK05439 171 PVYSHLIYDIVPG-EKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDP 249 (311)
T ss_pred eeEEeecCCcCCC-ceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCc
Confidence 9999999998753 33445678999999999985 44 389999999999999998888888876422
Q ss_pred --------ccccch------hhHHhhhcchhhhhcccccCcccEEEcCCCCCCC
Q 002197 655 --------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694 (954)
Q Consensus 655 --------g~~~~~------~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl 694 (954)
|.+.++ .+|.....|++.+||.|++.+||+||..+.+...
T Consensus 250 ~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h~i 303 (311)
T PRK05439 250 DSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHSI 303 (311)
T ss_pred chhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCCce
Confidence 211111 2444567899999999999999999998866544
No 10
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.94 E-value=9.8e-27 Score=241.99 Aligned_cols=166 Identities=33% Similarity=0.589 Sum_probs=148.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCe---EEeccccccc----------cccCCCCCcccHHHHHHHHHhhhcCCc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT---LISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKD 126 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~---VIs~Dd~y~~----------~~~~~~p~s~D~~~l~~~L~~l~~g~~ 126 (954)
.+.++|||+|+|||||||+|+.|.+.|+.. +|+.|+||+. ..++++|+++|++++.++|..++.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 456999999999999999999999999854 9999999984 234678999999999999999999999
Q ss_pred cccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHh-
Q 002197 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDS- 203 (954)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~- 203 (954)
+..|.|++..+.+... .....+.++||+||++++. +.+++++|++|||+++.+.|+.|++.||..++ ++++.++++
T Consensus 86 v~~P~yd~~~~~r~~~-~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREPE-TIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccCC-ccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999863 4455677899999999999 59999999999999999999999999999877 677776665
Q ss_pred ---hchhhhhccCCCcCcccEEEECC
Q 002197 204 ---IFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 204 ---v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
+.|++++||+|++++||+||+-.
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~~ 190 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPSG 190 (218)
T ss_pred HHhhChhhhhccCcccccceEEeecC
Confidence 58999999999999999999776
No 11
>PLN02796 D-glycerate 3-kinase
Probab=99.94 E-value=8e-27 Score=258.54 Aligned_cols=217 Identities=17% Similarity=0.243 Sum_probs=152.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccchhhh-cccc-----------CCCCCcccHHHHHHHH
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KDFK-----------YDDFSSLDLSLLSKNI 577 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~~~~~-~~~n-----------~d~p~t~D~~lL~~~L 577 (954)
.+|++|||+|++||||||+++.|...+. +..|++||||.+... ...+ .+.|++||++++.++|
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L 177 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETL 177 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHH
Confidence 4789999999999999999999998874 568999999987321 1111 2458999999999999
Q ss_pred HHHH----cCCceeccccccccc----ccCCccceee-ccCccEEEEEeecccchhh-hhcCCeEEEEEcChhHHHHHHH
Q 002197 578 SDIR----NGRRTKVPIFDLETG----ARSGFKELEV-SEDCGVIIFEGVYALHPEI-RKSLDLWIAVVGGVHSHLISRV 647 (954)
Q Consensus 578 ~~L~----~g~~v~~P~yD~~~~----dr~~~~~~~~-~~~~dVVIvEG~~~~~~~l-~~~~D~~I~v~~~~d~rl~Rri 647 (954)
..|+ .|+.+.+|.|||+.+ ||.+...|.. ..|.+||||||||+++..+ .+.++. .+.+.
T Consensus 178 ~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~-----~~~~l------ 246 (347)
T PLN02796 178 EALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKA-----VDPQL------ 246 (347)
T ss_pred HHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhc-----cChhH------
Confidence 9998 678999999999984 5765545543 4688999999999987322 111111 11111
Q ss_pred hcCccccccccchhhHHhhhcchhhhhcccccCcccEEEcCCCCCCCCccchhhhhccccchhhHHHhhcCChhhhhhhh
Q 002197 648 QRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSA 727 (954)
Q Consensus 648 ~RD~~~rg~~~~~~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m~~e~v~~fv 727 (954)
...+..+.. |.......++.+|.-. .- -++++|.||++||+.|++.++. |||++||.+||
T Consensus 247 ----~~vN~~L~~--y~~~w~~~~d~~i~L~--a~--~~~~v~~WR~qQE~~l~~~~~~----------gMsde~v~~FV 306 (347)
T PLN02796 247 ----EVVNKNLEA--YYDAWDKLVDSWIVIK--VD--DPSWVYEWRLQAEIAMRAKGKP----------GMSDEEVADFV 306 (347)
T ss_pred ----HHHHHHHHH--HHHHHHHhhceEEEEe--CC--CchHHHHHHHHHHHHHHHhCCC----------CCCHHHHHHHH
Confidence 112222222 2111111222332211 01 1367899999999999977666 99999999999
Q ss_pred hhccccc-ccCCCCCCCCCcCC--cceEEEEeeCCEEE
Q 002197 728 QNFIDMY-LRLPGIPTNGQLTE--SDCIRVRICEGRFA 762 (954)
Q Consensus 728 ~~y~~~Y-~~~~~l~~~~~~~~--~~~irir~~~~~~~ 762 (954)
++|+++| +|+|++...+.... ...|+|..+.+|-.
T Consensus 307 ~~~mP~y~~y~~~l~~~~~~~~~~~~~L~i~id~~R~~ 344 (347)
T PLN02796 307 SRYMPAYKAYLPGLYAEGPGGSDPDNVLVIEIDENRNP 344 (347)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCceEEEECCCCCc
Confidence 9999999 99998876554322 35789988877743
No 12
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.94 E-value=7.9e-27 Score=261.35 Aligned_cols=231 Identities=15% Similarity=0.205 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHcC-----CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccchhhh-cc---cc------
Q 002197 502 LSVQAIQALLENK-----GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KD---FK------ 561 (954)
Q Consensus 502 ~~i~~i~~l~~~~-----~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~~~~~-~~---~n------ 561 (954)
+|.+.+..+.... .+|++|||+|++|||||||++.|...+. +.+||+||||.+.+. .. .+
T Consensus 192 w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL 271 (460)
T PLN03046 192 WCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALL 271 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhh
Confidence 4555566665422 3799999999999999999999987762 678999999986321 11 11
Q ss_pred --CCCCCcccHHHHHHHHHHH----HcCCceeccccccccc----ccCCcccee-eccCccEEEEEeecccc-hhhhhcC
Q 002197 562 --YDDFSSLDLSLLSKNISDI----RNGRRTKVPIFDLETG----ARSGFKELE-VSEDCGVIIFEGVYALH-PEIRKSL 629 (954)
Q Consensus 562 --~d~p~t~D~~lL~~~L~~L----~~g~~v~~P~yD~~~~----dr~~~~~~~-~~~~~dVVIvEG~~~~~-~~l~~~~ 629 (954)
.+.|++||..++.++|..+ +.|+.+.+|+|||+.+ ||.+.+.|. +..|.+||||||||+++ |.-.+.+
T Consensus 272 ~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l 351 (460)
T PLN03046 272 ELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVV 351 (460)
T ss_pred cccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHh
Confidence 2468999999999999888 5789999999999984 576655554 45788999999999987 3211112
Q ss_pred CeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhhhhcccccCcccEEEcCCCCCCCCccchhhhhccccch
Q 002197 630 DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQV 709 (954)
Q Consensus 630 D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~ 709 (954)
+.. +.+. ...+..+.. |.......++.+|.-. --| ++++|.||++||+.|+...+.
T Consensus 352 ~~~-----D~~l----------~~VN~~L~~--Y~~~w~~~~D~li~L~--a~d--~~~Vy~WRlqQE~kLr~~gg~--- 407 (460)
T PLN03046 352 KAV-----DPQL----------EVVNKNLEA--YYDAWDKFIDAWVVIK--IQD--PSCVYQWRLQAEIAMRADGKP--- 407 (460)
T ss_pred hcc-----ChhH----------HHHHHHHHH--HHHHHHHhhceeEEee--CCC--hhHHHHHHHHHHHHHHHcCCC---
Confidence 111 1111 111222221 2111111122222110 011 357799999999999865444
Q ss_pred hhHHHhhcCChhhhhhhhhhccccc-ccCCCCCCCCCcC-C-cceEEEEeeCCEEEE
Q 002197 710 AYQDILKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQLT-E-SDCIRVRICEGRFAL 763 (954)
Q Consensus 710 ~~~~~~~~m~~e~v~~fv~~y~~~Y-~~~~~l~~~~~~~-~-~~~irir~~~~~~~l 763 (954)
||+++||.+||++|++.| +|+|++...+... . +..|+|..+.+|--+
T Consensus 408 -------GMsdeqV~~FV~~YmPaY~~y~~~L~~~~~~~~~~~~~L~i~Id~~R~~~ 457 (460)
T PLN03046 408 -------GMSDEEVMDFVSRYLPAYKAYLPTLYAEGPSGSDPDHVLVIDIDEERNPI 457 (460)
T ss_pred -------CCCHHHHHHHHHHhhhHHHHHHHHHhccCCcccCCCceEEEEECCCCCcc
Confidence 999999999999999999 9999987655542 2 347999998887543
No 13
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.93 E-value=5.5e-26 Score=232.75 Aligned_cols=137 Identities=20% Similarity=0.248 Sum_probs=125.4
Q ss_pred ccccccccccccceeccccCCCCcccccccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEeeh----hHHHHHH
Q 002197 250 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL 325 (954)
Q Consensus 250 ~~~~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~~~~~L~ 325 (954)
++.+.+...|+|.||+.|+++|..++.++ |||+.++++.+|||||+.++.. |.|+|+|+.| +|.++|.
T Consensus 24 g~~~~~~~~q~D~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~lT~Kgp~~~~~~---~~~~E~e~~v~d~~~~~~iL~ 95 (174)
T TIGR00318 24 GFKFIKKEFQHDIYFSNPCRDFASTDEAL-----RIRKLTGEKFVTYKGPKIDNES---KTRKEIEFKIEDIENALQILK 95 (174)
T ss_pred CcccccccceEEEeecCCCcchhhCCcEE-----EEEEcCCcEEEEEeCCccCCcc---eEEEEEEEEECCHHHHHHHHH
Confidence 45677889999999999999999988877 9999888999999999977665 9999999999 8999999
Q ss_pred hcCCceeEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEecCh---------hHHHHHHHHcCCCCCccchhHHHHHH
Q 002197 326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNR---------KTVGAEALRMGINGPWITKSYLEMVL 395 (954)
Q Consensus 326 ~LGf~~~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~~~---------~~v~~~a~~Lgl~~~~~~~sYlel~l 395 (954)
+|||+++++++|.|++|++++++|+||.|+|||. |||||++.+ +.|.++|++||+.++.+++||+||++
T Consensus 96 ~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG~-FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~ 173 (174)
T TIGR00318 96 KLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLGF-FLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLS 173 (174)
T ss_pred HCCCeEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhh
Confidence 9999999999999999999999999999999999 999999832 58999999999955569999999984
No 14
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.93 E-value=4.4e-26 Score=243.88 Aligned_cols=168 Identities=17% Similarity=0.325 Sum_probs=144.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccch-h-h---------hccccCCC--CCcccHHHHHHHHHHH
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS-E-Q---------VKDFKYDD--FSSLDLSLLSKNISDI 580 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~~-~-~---------~~~~n~d~--p~t~D~~lL~~~L~~L 580 (954)
+|||+|+|||||||++++|++.|+ +.+|+.|+||+. + + ....||++ |++.|+++|.+.|..|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998774 679999999994 1 1 12368999 9999999999999999
Q ss_pred HcCCceeccccccc----------ccccCCccceeeccCccEEEEEeecccc----hhhhhcCCeEEEEEcChhHHHHHH
Q 002197 581 RNGRRTKVPIFDLE----------TGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLISR 646 (954)
Q Consensus 581 ~~g~~v~~P~yD~~----------~~dr~~~~~~~~~~~~dVVIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~Rr 646 (954)
++|+.+..|.||+. .|.+.++. ....|.+|||+||++.+. +.+++++|++|||+++.++++.||
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~--~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irR 158 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE--DLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQK 158 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcc--cccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHH
Confidence 99999999999873 24444322 124689999999999543 689999999999999999999999
Q ss_pred HhcCccccccccch--hhHHhhhcchhhhhcccccCcccEEEcCC
Q 002197 647 VQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 647 i~RD~~~rg~~~~~--~q~~~~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
+.||..+||++.+. .+|...+ |.|..||.|++.+||++|...
T Consensus 159 I~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~ 202 (277)
T cd02029 159 IHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRV 202 (277)
T ss_pred HHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEecc
Confidence 99999999999986 6788877 999999999999999998654
No 15
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.93 E-value=1.4e-25 Score=245.81 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=164.1
Q ss_pred CCCccccCCCcccceecccCCCCc-cchhhhHHHHHHHHHHHH---------cCCCCEEEeeeCCCCccHHHHHHHHHHH
Q 002197 471 AGSSVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQALLE---------NKGLPVIVGIGGPSGSGKTSLAHKMANI 540 (954)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~e~~~~~i~~i~~l~~---------~~~~p~iIGIsGpsGSGKTTlA~~La~~ 540 (954)
+..++....++++.+.+..+.+-| ++.+-+.+.+.+.+.+.. ..+.|++|||+||+||||||+|+.|+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~iy~pl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 6 SEDEIKRLKGINEDLSLEEVATIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 333444445566665554444444 333333344443333211 2467899999999999999999998876
Q ss_pred hC-------Cceeccccccchhhh-c----cccCCCCCcccHHHHHHHHHHHHcCCc-eecccccccccccCCccceeec
Q 002197 541 VG-------CEVVSLESYFKSEQV-K----DFKYDDFSSLDLSLLSKNISDIRNGRR-TKVPIFDLETGARSGFKELEVS 607 (954)
Q Consensus 541 Lg-------~~vIs~Ddfy~~~~~-~----~~n~d~p~t~D~~lL~~~L~~L~~g~~-v~~P~yD~~~~dr~~~~~~~~~ 607 (954)
+. +.++++|+||.+... . ..+++.|+++|.+++.+.|..+++|+. +.+|.||+.++++.+. .....
T Consensus 86 l~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~-~~~~v 164 (290)
T TIGR00554 86 LSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPD-GFKVV 164 (290)
T ss_pred HhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCCCceecCccccccCCcCCC-CeEEc
Confidence 63 668999999987432 1 124678999999999999999999986 9999999999998863 33445
Q ss_pred cCccEEEEEeecccc-hh----------hhhcCCeEEEEEcChhHHHHHHHhcCccc--cc-------------cccch-
Q 002197 608 EDCGVIIFEGVYALH-PE----------IRKSLDLWIAVVGGVHSHLISRVQRDKSR--MG-------------CFMSQ- 660 (954)
Q Consensus 608 ~~~dVVIvEG~~~~~-~~----------l~~~~D~~I~v~~~~d~rl~Rri~RD~~~--rg-------------~~~~~- 660 (954)
.+.+|||+||+|++. +. +++++|++|||++|.+.+..|+++|...- ++ .+.+.
T Consensus 165 ~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea 244 (290)
T TIGR00554 165 VQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEA 244 (290)
T ss_pred CCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHH
Confidence 788999999999985 33 57999999999999999999998886422 22 11111
Q ss_pred -----hhHHhhhcchhhhhcccccCcccEEEcCCCCCCC
Q 002197 661 -----NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694 (954)
Q Consensus 661 -----~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl 694 (954)
..|.....|++.+||.|++.+||+||..+-+...
T Consensus 245 ~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~i 283 (290)
T TIGR00554 245 IKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHAV 283 (290)
T ss_pred HHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCCCcE
Confidence 2345678899999999999999999998876544
No 16
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.92 E-value=2.6e-25 Score=228.87 Aligned_cols=168 Identities=40% Similarity=0.649 Sum_probs=142.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh-----CCceeccccccchh---hhccccCCCCCcccHHHHHHHHHHHHcCCceeccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSE---QVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L-----g~~vIs~Ddfy~~~---~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~ 590 (954)
+|||+|++||||||||+.|++.+ ++.+|++||||++. .....+++.|..+|++++.+.|..|++|+.+.+|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999987 46799999999863 22334677888899999999999999999999999
Q ss_pred ccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhH-HHHHHHhcCccccccccchhhHHhhhcc
Q 002197 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHS-HLISRVQRDKSRMGCFMSQNDIMMTVFP 669 (954)
Q Consensus 591 yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~-rl~Rri~RD~~~rg~~~~~~q~~~~v~p 669 (954)
||+.++.+.+... ....+.+|||+||++++++.+++++|++||++++.+. |+.||+.||..+||++.+..-..+...|
T Consensus 81 yd~~~~~~~~~~~-~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~ 159 (179)
T cd02028 81 YDFRTGKRRGYRK-LKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVP 159 (179)
T ss_pred ceeECCccCCCce-EEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhccccc
Confidence 9999998875322 3356789999999999999999999999999999998 9999999999999999886322244566
Q ss_pred hhhhhc-ccccCcccEEEc
Q 002197 670 MFQQHI-EPHLVHAHLKIR 687 (954)
Q Consensus 670 ~~~~~I-ep~~~~ADivI~ 687 (954)
.++.|+ .|.+..||++++
T Consensus 160 ~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 160 SGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred CchhhcCCCchhccceecc
Confidence 666555 678899998875
No 17
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.92 E-value=7.3e-25 Score=232.69 Aligned_cols=173 Identities=18% Similarity=0.248 Sum_probs=140.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-------Cceeccccccchhhh----ccc-cCCCCCcccHHHHHHHHHHHHc-CCc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRN-GRR 585 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg-------~~vIs~Ddfy~~~~~----~~~-n~d~p~t~D~~lL~~~L~~L~~-g~~ 585 (954)
+|||+||+||||||||+.|+..+. +.+|+||+||.+... ... +.+.|+++|.+++.+.|..|++ ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999999873 568999999987432 111 3567999999999999999999 478
Q ss_pred eecccccccccccCCccceeeccCccEEEEEeecccch-h-----hhhcCCeEEEEEcChhHH---HHHHHhcCcccccc
Q 002197 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-E-----IRKSLDLWIAVVGGVHSH---LISRVQRDKSRMGC 656 (954)
Q Consensus 586 v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~-~-----l~~~~D~~I~v~~~~d~r---l~Rri~RD~~~rg~ 656 (954)
+.+|.||+..+++.+. ......+.+||||||++++++ . +++++|++|||++|.+.+ +.||..|+..++|+
T Consensus 81 v~~P~yd~~~~~~~~~-~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r 159 (220)
T cd02025 81 VKIPVYSHLTYDVIPG-EKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFS 159 (220)
T ss_pred EEccccceeccccCCC-CceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998864 233356779999999999974 3 899999999999999986 55555556556665
Q ss_pred ccch------------------hhHHhhhcchhhhhcccccCcccEEEcCCCCC
Q 002197 657 FMSQ------------------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (954)
Q Consensus 657 ~~~~------------------~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~ 692 (954)
.... .+|...+.|++.+||.|++..||+||..+.+.
T Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~ 213 (220)
T cd02025 160 DPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH 213 (220)
T ss_pred CchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence 5541 23666789999999999999999999877554
No 18
>COG4240 Predicted kinase [General function prediction only]
Probab=99.92 E-value=1.9e-25 Score=228.70 Aligned_cols=205 Identities=21% Similarity=0.337 Sum_probs=138.5
Q ss_pred HcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C---Cceeccccccchhhh-----ccc-----cCCCCCcccHHHHHH
Q 002197 512 ENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G---CEVVSLESYFKSEQV-----KDF-----KYDDFSSLDLSLLSK 575 (954)
Q Consensus 512 ~~~~~p~iIGIsGpsGSGKTTlA~~La~~L---g---~~vIs~Ddfy~~~~~-----~~~-----n~d~p~t~D~~lL~~ 575 (954)
...++|+||||+||+||||||++..|...| | +..+|+||||+++.. ... ..+.|||||+.++..
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 356789999999999999999999988766 3 567899999999542 111 246799999999999
Q ss_pred HHHHHHcCCc-eecccccccc----cccCCccceeeccCccEEEEEeecccchhh-hhcCCeEE-EEEcChhHHHHHHHh
Q 002197 576 NISDIRNGRR-TKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEI-RKSLDLWI-AVVGGVHSHLISRVQ 648 (954)
Q Consensus 576 ~L~~L~~g~~-v~~P~yD~~~----~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l-~~~~D~~I-~v~~~~d~rl~Rri~ 648 (954)
+|+.+.+|++ |.+|.||++. |||.+...|... +.+|+|+||||+++..+ ..++.... -+.+..+....+-+
T Consensus 125 VLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~-~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dv- 202 (300)
T COG4240 125 VLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKF-EVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADV- 202 (300)
T ss_pred HHHHHhcCCCCcccccccchhccCCCCCCCcccceec-ceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHHH-
Confidence 9999988764 7999999975 678766666543 48999999999986222 11111100 00000111111110
Q ss_pred cCccccccccchhhHHhhhcchhhhhcccccCcccEEEcCCCCCCCCccchhhhhccccchhhHHHhhcCChhhhhhhhh
Q 002197 649 RDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQ 728 (954)
Q Consensus 649 RD~~~rg~~~~~~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m~~e~v~~fv~ 728 (954)
........|.|++. ..--...--.|+++|.||+||||.|++ .+.+||+|+||..||+
T Consensus 203 ------------N~kLa~Y~pL~~rI-dsLillta~din~vy~WRlQqEhkliA----------r~~kgmsdeqv~efvn 259 (300)
T COG4240 203 ------------NDKLAPYRPLFDRI-DSLILLTAPDINTVYAWRLQQEHKLIA----------RLAKGMSDEQVSEFVN 259 (300)
T ss_pred ------------HhhhhhhHHHHHHh-hheeEecccchHHHHHHHHHHHHHHHH----------HHhccCcHHHHHHHHH
Confidence 11122333444442 211111112357889999999999985 3446999999999999
Q ss_pred hccccc-ccCCCCC
Q 002197 729 NFIDMY-LRLPGIP 741 (954)
Q Consensus 729 ~y~~~Y-~~~~~l~ 741 (954)
.|++.| ||+..+.
T Consensus 260 ~ymrsl~lylq~ls 273 (300)
T COG4240 260 AYMRSLELYLQRLS 273 (300)
T ss_pred HHHHHHHHHHHHHH
Confidence 999999 7776443
No 19
>PRK05439 pantothenate kinase; Provisional
Probab=99.91 E-value=5.7e-24 Score=234.72 Aligned_cols=200 Identities=17% Similarity=0.224 Sum_probs=161.9
Q ss_pred cccccCCcccchhh---hHHHHHHHHHHHHh----------------cCCCcEEEEEECCCCCcHHHHHHHHHHHhC---
Q 002197 30 SILQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG--- 87 (954)
Q Consensus 30 ~~~~~~~~~~s~d~---~~~~lv~~i~~~~~----------------~~~~~~IIgItG~sGSGKSTlA~~La~~Lg--- 87 (954)
..++++++.+++++ +|.+|+++|..... ..+.+++|||+|++||||||+|+.|++.++
T Consensus 35 ~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~ 114 (311)
T PRK05439 35 ERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWP 114 (311)
T ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhC
Confidence 34689999999555 99999998876531 345789999999999999999999998764
Q ss_pred ----CeEEecccccccc---------ccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCCcEE
Q 002197 88 ----CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVV 153 (954)
Q Consensus 88 ----~~VIs~Dd~y~~~---------~~~~~p~s~D~~~l~~~L~~l~~g~~-i~~p~~d~~~~~~~~~~~~~~~~~~vV 153 (954)
+.+|++|+||... ..++.|+++|.+.+.++|..++.|.. +..|.||+..+++.........+.++|
T Consensus 115 ~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIv 194 (311)
T PRK05439 115 EHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDIL 194 (311)
T ss_pred CCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEE
Confidence 6799999998742 24678999999999999999999986 999999999999876555556677899
Q ss_pred EEEecccch-hh------hhcCCCEEEEEEcCHHHHHHHHHHhccCC----------------ccCHHHH-------HHh
Q 002197 154 IVDGTYALD-AR------LRSLLDIRVAVVGGVHFSLISKVQYDIGD----------------SCSLDSL-------IDS 203 (954)
Q Consensus 154 IvEG~~ll~-~~------l~~~~D~~I~Vda~~~~rl~Rri~RD~~~----------------r~~~e~~-------~~~ 203 (954)
|+||++++. +. +++++|++|||+++.+....|++.|.... ..+.+++ |.+
T Consensus 195 IVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~ 274 (311)
T PRK05439 195 IVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDE 274 (311)
T ss_pred EEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHh
Confidence 999999885 33 48999999999999999888887776531 1122222 222
Q ss_pred -hchhhhhccCCCcCcccEEEECCCCC
Q 002197 204 -IFPLFRKHIEPDLHHAQIRINNRFVS 229 (954)
Q Consensus 204 -v~p~~~~~Iep~~~~ADiII~N~~~~ 229 (954)
..|++++||.|++.+||+||.++-.+
T Consensus 275 ~~~pn~~~~I~Ptk~~ADlIi~~~~~h 301 (311)
T PRK05439 275 INLPNLEENILPTRERADLILHKGADH 301 (311)
T ss_pred cchhhHHHhccCCCcCCCEEEeCCCCC
Confidence 36999999999999999999988544
No 20
>PTZ00301 uridine kinase; Provisional
Probab=99.91 E-value=3.8e-24 Score=225.21 Aligned_cols=166 Identities=27% Similarity=0.461 Sum_probs=142.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh----C---CeEEeccccccc----------cccCCCCCcccHHHHHHHHHhhhcC
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEG 124 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L----g---~~VIs~Dd~y~~----------~~~~~~p~s~D~~~l~~~L~~l~~g 124 (954)
.++|||+|+|||||||+|+.|++.+ | +.++++|+||+. ..+++.|.++|.+.+.+.|..++.|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4899999999999999999998766 3 458899999874 2356789999999999999999999
Q ss_pred CccccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHH
Q 002197 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID 202 (954)
Q Consensus 125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~ 202 (954)
+.+..|.||+..+.+... .....+.+++|+||+++++ +.+++++|++|||+++.++++.|++.||..++ .+.+.++.
T Consensus 83 ~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 999999999999888754 3444566999999999985 78999999999999999999999999998865 56665544
Q ss_pred ----hhchhhhhccCCCcCcccEEEECCCC
Q 002197 203 ----SIFPLFRKHIEPDLHHAQIRINNRFV 228 (954)
Q Consensus 203 ----~v~p~~~~~Iep~~~~ADiII~N~~~ 228 (954)
.+.|.+.+||+|++.+||+||+++-.
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~ 191 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWKD 191 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCCc
Confidence 35899999999999999999987754
No 21
>PRK15453 phosphoribulokinase; Provisional
Probab=99.91 E-value=4.2e-24 Score=230.39 Aligned_cols=173 Identities=18% Similarity=0.290 Sum_probs=145.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccc-hh-h---------hccccCCC--CCcccHHHHHHH
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SE-Q---------VKDFKYDD--FSSLDLSLLSKN 576 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~-~~-~---------~~~~n~d~--p~t~D~~lL~~~ 576 (954)
.++.+|||+|+|||||||+|+.|++.++ +.++++|+||+ .. + ....||++ |++.|+++|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4678999999999999999999998774 67899999997 31 1 12238888 999999999999
Q ss_pred HHHHHcCCceeccccccc-----ccccCCc--cceee-ccCccEEEEEeecccc----hhhhhcCCeEEEEEcChhHHHH
Q 002197 577 ISDIRNGRRTKVPIFDLE-----TGARSGF--KELEV-SEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLI 644 (954)
Q Consensus 577 L~~L~~g~~v~~P~yD~~-----~~dr~~~--~~~~~-~~~~dVVIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~ 644 (954)
|..+++|+.+..|.|++. .+.+.+. ..|+. ..+.+|||+||++.+. ..++.++|++|||+++.++++.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 999999999999999743 2444421 22433 3578999999999874 5689999999999999999999
Q ss_pred HHHhcCccccccccch--hhHHhhhcchhhhhcccccCcccEEEcC
Q 002197 645 SRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (954)
Q Consensus 645 Rri~RD~~~rg~~~~~--~q~~~~v~p~~~~~Iep~~~~ADivI~n 688 (954)
||+.||..+||++.+. .++.... |.|..||.|++.+||+++..
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqr 207 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQR 207 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEe
Confidence 9999999999999986 6777764 99999999999999998754
No 22
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.91 E-value=7.8e-24 Score=222.82 Aligned_cols=175 Identities=32% Similarity=0.492 Sum_probs=152.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Cceeccccccchhh------hccccCCCCCcccHHHHHHHHHHHHcCC
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR 584 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg---~~vIs~Ddfy~~~~------~~~~n~d~p~t~D~~lL~~~L~~L~~g~ 584 (954)
..++.+|||+|++||||||||+.|+..++ +.++++|+||+... ....++++|.++|++.+.+.|..++.|.
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 82 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGK 82 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCC
Confidence 35789999999999999999999999983 67899999998632 2345688999999999999999999999
Q ss_pred ceecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch--h
Q 002197 585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 661 (954)
Q Consensus 585 ~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~--~ 661 (954)
.+..|.||+.++.+.+ ......+.+++|+||+++++ +.+.+.+|.+|||++|.++++.|++.||...+|.+.+. .
T Consensus 83 ~v~~p~~d~~~~~~~~--~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~ 160 (209)
T PRK05480 83 AIEIPVYDYTEHTRSK--ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVIN 160 (209)
T ss_pred ccccCcccccccccCC--CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHH
Confidence 9999999999998764 22224567899999999997 78999999999999999999999999999888987664 4
Q ss_pred hHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 662 q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
.|...+.|.|..|++|.+.+||++|+|+.
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 161 QYLSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HHHHhhhhhHHhhccHhhcceeEEecCCC
Confidence 56667789999999999999999999874
No 23
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.90 E-value=1.3e-23 Score=218.97 Aligned_cols=163 Identities=32% Similarity=0.544 Sum_probs=136.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC---------CeEEecccccccc------------ccCCCCCcccHHHHHHHHHhhh
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIG---------CTLISMENYRVGV------------DEGNDLDSIDFDALVQNLQDLT 122 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg---------~~VIs~Dd~y~~~------------~~~~~p~s~D~~~l~~~L~~l~ 122 (954)
||||+|++||||||+|+.|+..|+ ..++++|+||... ..++.|+++|++.+.+.|..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999997 3478889987631 1346789999999999999999
Q ss_pred cCCccccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHH
Q 002197 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSL 200 (954)
Q Consensus 123 ~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~ 200 (954)
.|+.+..|.|++..+.+...... ..+.++||+||++++. +.+++++|++|||+++.++++.|++.||...+ .+++++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~-~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIII-ISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEE-EES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCcccccccccccccceeeeee-cCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 99999999999999988774333 4467899999999887 67999999999999999999999999999765 677776
Q ss_pred HHh---hchhhhhccCCCcCcccEEEECCC
Q 002197 201 IDS---IFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 201 ~~~---v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
+++ ..|.+.+||+|++++||+||++.-
T Consensus 160 ~~~~~~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 160 IAQYERVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred EEEeecCChhhhhheeccccccEEEECCCC
Confidence 655 479999999999999999998873
No 24
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.90 E-value=6e-23 Score=225.17 Aligned_cols=200 Identities=16% Similarity=0.187 Sum_probs=161.6
Q ss_pred ccccCCcccchh---hhHHHHHHHHHHHHh----------------cCCCcEEEEEECCCCCcHHHHHHHHHHHhC----
Q 002197 31 ILQSLPVHASFD---HGYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG---- 87 (954)
Q Consensus 31 ~~~~~~~~~s~d---~~~~~lv~~i~~~~~----------------~~~~~~IIgItG~sGSGKSTlA~~La~~Lg---- 87 (954)
.++++++.+|++ ++|.+|+++++.+.. ..+.|++|||+|++||||||+|+.|+..+.
T Consensus 12 ~~~~~~~~~~~~~v~~iy~pl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~ 91 (290)
T TIGR00554 12 RLKGINEDLSLEEVATIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLSRWPE 91 (290)
T ss_pred HhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 468999999955 499999998877642 245689999999999999999999987763
Q ss_pred ---CeEEecccccccc---------ccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCCcEEE
Q 002197 88 ---CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVI 154 (954)
Q Consensus 88 ---~~VIs~Dd~y~~~---------~~~~~p~s~D~~~l~~~L~~l~~g~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVI 154 (954)
+.++++|+||.+. ...+.|+++|.+.+.+.+..++.|.. +..|.||+.++++.........+.+++|
T Consensus 92 ~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiI 171 (290)
T TIGR00554 92 HRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILI 171 (290)
T ss_pred CCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEE
Confidence 6789999998742 24578999999999999999999885 9999999999998876555557789999
Q ss_pred EEecccch-hh----------hhcCCCEEEEEEcCHHHHHHHHHHhccCCc----------------cCHHHH-------
Q 002197 155 VDGTYALD-AR----------LRSLLDIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSL------- 200 (954)
Q Consensus 155 vEG~~ll~-~~----------l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r----------------~~~e~~------- 200 (954)
+||++++. +. +++++|++||||+|.+.+..|+++|...-+ .+.+++
T Consensus 172 vEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~ 251 (290)
T TIGR00554 172 LEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTI 251 (290)
T ss_pred ECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHH
Confidence 99999986 22 469999999999999999999888853211 112122
Q ss_pred HHh-hchhhhhccCCCcCcccEEEECCCCCc
Q 002197 201 IDS-IFPLFRKHIEPDLHHAQIRINNRFVSS 230 (954)
Q Consensus 201 ~~~-v~p~~~~~Iep~~~~ADiII~N~~~~~ 230 (954)
|.+ ..|++.+||.|++.+||+||.++-++.
T Consensus 252 w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~ 282 (290)
T TIGR00554 252 WKEINWLNLKQNILPTRERASLILTKGANHA 282 (290)
T ss_pred HHHcchhhHHhhCCCCcccccEEEecCCCCc
Confidence 222 379999999999999999999885543
No 25
>PLN02348 phosphoribulokinase
Probab=99.88 E-value=1.9e-22 Score=226.51 Aligned_cols=180 Identities=23% Similarity=0.355 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC--------------------CeEEeccccccc-cc--
Q 002197 45 YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG--------------------CTLISMENYRVG-VD-- 101 (954)
Q Consensus 45 ~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg--------------------~~VIs~Dd~y~~-~~-- 101 (954)
-.++...+.....+.+++++|||+|++||||||+|+.|++.|| +.+|++|+||.. ..
T Consensus 32 ~~~~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r 111 (395)
T PLN02348 32 KSPAASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGR 111 (395)
T ss_pred cCchhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhH
Confidence 3456667776777778899999999999999999999999986 258999999852 11
Q ss_pred -----cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEE
Q 002197 102 -----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAV 175 (954)
Q Consensus 102 -----~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~V 175 (954)
...+|.++|++.+.+.|..++.|+.+..|.|||.++...... ..++.++||+||.+++. +.+++++|++|||
T Consensus 112 ~~~g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e--~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyV 189 (395)
T PLN02348 112 KEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--LIEPPKILVIEGLHPMYDERVRDLLDFSIYL 189 (395)
T ss_pred hhcCCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcE--EcCCCcEEEEechhhccCccccccCcEEEEE
Confidence 113577899999999999999999999999999998765543 24567899999999987 5788999999999
Q ss_pred EcCHHHHHHHHHHhccCCc-cCHHHH---HHhhchhhhhccCCCcCcccEEEECC
Q 002197 176 VGGVHFSLISKVQYDIGDS-CSLDSL---IDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 176 da~~~~rl~Rri~RD~~~r-~~~e~~---~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
+++.+.++.|+++||...+ .+.+++ ++.+.|.+.+||+|.+++||+||+--
T Consensus 190 d~~~dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 190 DISDDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred ECCHHHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence 9999999999999998765 455544 44568999999999999999999544
No 26
>PRK07429 phosphoribulokinase; Provisional
Probab=99.88 E-value=3.8e-22 Score=222.86 Aligned_cols=176 Identities=23% Similarity=0.355 Sum_probs=148.8
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC---Cceeccccccch--hhhcccc--CCCCCcccHHHHHHHHHHHHcCCc
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKS--EQVKDFK--YDDFSSLDLSLLSKNISDIRNGRR 585 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg---~~vIs~Ddfy~~--~~~~~~n--~d~p~t~D~~lL~~~L~~L~~g~~ 585 (954)
+.+++++|||+|++|||||||++.|+..++ +.++++||||.. .+....+ .-+|.++|++++.+.+..|++|+.
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~ 83 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP 83 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence 356899999999999999999999999987 679999999753 1122222 236889999999999999999999
Q ss_pred eecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch-hhH
Q 002197 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDI 663 (954)
Q Consensus 586 v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~-~q~ 663 (954)
+..|.||+.++...+ .....+.++||+||+++++ +.+++.+|++|||+++.+.++.|+++||..++|.+.+. .+.
T Consensus 84 I~~P~yd~~~g~~~~---~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~ 160 (327)
T PRK07429 84 ILKPIYNHETGTFDP---PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE 160 (327)
T ss_pred eecceeecCCCCcCC---cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 999999999987653 2234567999999999765 67889999999999999999999999999999987765 456
Q ss_pred HhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 664 MMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 664 ~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
+....|.+.+||+|.+..||+||++...
T Consensus 161 i~~r~pd~~~yI~P~k~~ADiVI~~~p~ 188 (327)
T PRK07429 161 IEAREPDFEAYIRPQRQWADVVIQFLPT 188 (327)
T ss_pred HHHhCccHhhhhcccccCCCEEEEcCCC
Confidence 6678999999999999999999987643
No 27
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.88 E-value=4.4e-22 Score=209.43 Aligned_cols=175 Identities=33% Similarity=0.512 Sum_probs=150.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Cceeccccccchhh------hccccCCCCCcccHHHHHHHHHHHHcCC
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR 584 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg---~~vIs~Ddfy~~~~------~~~~n~d~p~t~D~~lL~~~L~~L~~g~ 584 (954)
.++..+|||+|++|||||||++.|+..++ +.++++|+||.... ....+++.|.++|..++.+.|..|+.|+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 35668999999999999999999998875 67999999987522 2344678899999999999999999999
Q ss_pred ceecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch--h
Q 002197 585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 661 (954)
Q Consensus 585 ~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~--~ 661 (954)
.+.+|.||+.++++.. ......+.+++|+||++++. +.+.+.+|.+|||+++.+.++.|++.||...+|...+. .
T Consensus 83 ~v~~p~yd~~~~~~~~--~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~ 160 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPK--ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVID 160 (207)
T ss_pred CEecccceeecCCCCC--ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHH
Confidence 9999999999888743 22334567999999999975 66888999999999999999999999999888887764 4
Q ss_pred hHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 662 q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
+|....+|.|..|++|.+..||+||+|+-
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 161 QYRKTVRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred HHHHhhhhhHHHhCcccccccEEEEcCCC
Confidence 66677899999999999999999998754
No 28
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.87 E-value=4.9e-22 Score=207.37 Aligned_cols=172 Identities=34% Similarity=0.517 Sum_probs=147.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCceeccccccchhh------hccccCCCCCcccHHHHHHHHHHHHcCCceecc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L---g~~vIs~Ddfy~~~~------~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P 589 (954)
+|||+||+||||||+|+.|+..+ ++.++++|+||+... ....+++.|.++|++.+.+.|..++.++.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 378999999997521 123457789999999999999999999999999
Q ss_pred cccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch--hhHHhh
Q 002197 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMT 666 (954)
Q Consensus 590 ~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~--~q~~~~ 666 (954)
.||++++.+... .. ...+.+++|+||++++. +.+.+.+|.+|||++|.+.++.|++.||..++|.+.+. ..+...
T Consensus 81 ~~d~~~~~~~~~-~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~ 158 (198)
T cd02023 81 VYDFKTHSRLKE-TV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKF 158 (198)
T ss_pred ccccccCcccCC-ce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHh
Confidence 999999987642 22 34567999999999987 68889999999999999999999999999888977654 456667
Q ss_pred hcchhhhhcccccCcccEEEcCCCCC
Q 002197 667 VFPMFQQHIEPHLVHAHLKIRNDFDP 692 (954)
Q Consensus 667 v~p~~~~~Iep~~~~ADivI~n~~~~ 692 (954)
..+.+..|++|++..||++|+|+-+.
T Consensus 159 ~~~~~~~~i~~~~~~aD~ii~~~~~~ 184 (198)
T cd02023 159 VKPMHEQFIEPTKRYADVIIPRGGDN 184 (198)
T ss_pred hhhhHHHhCccchhceeEEECCCCCc
Confidence 88999999999999999999987544
No 29
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.87 E-value=6.3e-22 Score=216.57 Aligned_cols=169 Identities=21% Similarity=0.345 Sum_probs=142.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCceeccccccchh--hhc--cccCCCCCcccHHHHHHHHHHHHcCCceecccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSE--QVK--DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L---g~~vIs~Ddfy~~~--~~~--~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (954)
+|||+|++|||||||++.|+..+ ++.++++|+|++.. +.. .....+|.+.+++++.+.+..+++|+.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999887 46799999998642 111 123346888899999999999999999999999
Q ss_pred cccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch-hhHHhhhcc
Q 002197 592 DLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMTVFP 669 (954)
Q Consensus 592 D~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~-~q~~~~v~p 669 (954)
|+.++...+ .....+.++||+||+++++ +.+++++|++|||+++.+.++.|+++|+..++|.+.+. .+.+..+.|
T Consensus 81 ~~~~~~~~~---~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~ 157 (273)
T cd02026 81 NHVTGLIDP---PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKP 157 (273)
T ss_pred cccCCCcCC---cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhch
Confidence 999987543 2234567999999999875 68999999999999999999999999999999988765 455556899
Q ss_pred hhhhhcccccCcccEEEcCCC
Q 002197 670 MFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 670 ~~~~~Iep~~~~ADivI~n~~ 690 (954)
.+.+||+|.+.+||+||+...
T Consensus 158 ~~~~~I~P~~~~ADvVI~~~p 178 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQVLP 178 (273)
T ss_pred hHHHHhccccccCcEEEEccC
Confidence 999999999999999997653
No 30
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.87 E-value=9.6e-22 Score=196.91 Aligned_cols=131 Identities=26% Similarity=0.468 Sum_probs=121.4
Q ss_pred cccccccCCCCCCCCCcCCcc-eEEEE-eeCCEEEEEeeccccccCcccccceeEEeh--hhHHHHHHHhCceeeeeeee
Q 002197 730 FIDMYLRLPGIPTNGQLTESD-CIRVR-ICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEA 805 (954)
Q Consensus 730 y~~~Y~~~~~l~~~~~~~~~~-~irir-~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~--~~~~~~l~~lg~~~~~~~~~ 805 (954)
-.|+||..| .+++..++ ++||| ..+|+++||||||++|++++||.++|++|+ ..++.+|.+|||.+++.|+|
T Consensus 33 q~DiYf~~p----~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v~D~~~~~~il~~LGF~~~~~VkK 108 (178)
T COG1437 33 QEDIYFDHP----CRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEVSDVEKALEILKRLGFKEVAVVKK 108 (178)
T ss_pred eeeeeeecC----CcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEeCCHHHHHHHHHHcCCceeeEEEE
Confidence 459999998 78888887 99999 778999999999999999999999999995 89999999999999999999
Q ss_pred eeEEeecCcEEEEEecccCCCCceEEE---------ecccHHHHHHHHhhcCCC-CCccchhHHHHHHhh
Q 002197 806 SAFIYQDGKILIEVDHLQDAPSPYLQI---------KGVDKEAVAAAGSTLKLD-GSYTTKSYLQIILEK 865 (954)
Q Consensus 806 ~~~~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~v~~~~~~l~~~-~~~~~~syle~~~~~ 865 (954)
.|++|..++++|++|.|+||| .|++| ...+++++.+++++|||+ +..+|+|||||+.++
T Consensus 109 ~R~iY~~~~~~i~lD~VegLG-~F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYlELl~~~ 177 (178)
T COG1437 109 TREIYKVGNVTIELDAVEGLG-DFLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYLELLLEK 177 (178)
T ss_pred EEEEEeeCCEEEEEecccCCc-ccEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHHHHHhcc
Confidence 999999999999999999999 99999 345568899999999995 999999999998754
No 31
>PRK06696 uridine kinase; Validated
Probab=99.86 E-value=2.9e-21 Score=205.67 Aligned_cols=178 Identities=20% Similarity=0.254 Sum_probs=140.3
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CCc--eeccccccchhhh-ccccCCCC-----CcccHHHHHHHHHHHH
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCE--VVSLESYFKSEQV-KDFKYDDF-----SSLDLSLLSKNISDIR 581 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~L---g~~--vIs~Ddfy~~~~~-~~~n~d~p-----~t~D~~lL~~~L~~L~ 581 (954)
..++|++|||+|++||||||||+.|++.| |.. ++||||||.+... ...++++| +++|.++|.+.+..+.
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 45689999999999999999999999998 444 5679999998543 22344444 7899999999877743
Q ss_pred -cCC--ceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCcccccccc
Q 002197 582 -NGR--RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (954)
Q Consensus 582 -~g~--~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~ 658 (954)
.+. .+..|.||+..+..... ......+.++||+||++++.+.+.+.+|.+|||+++.+.++.|++.||...+|...
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~ 176 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHN-PPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYE 176 (223)
T ss_pred cCCCceeEeeeeeccccCcccCC-CceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCch
Confidence 332 47788999988765421 22333567899999999998999999999999999999999999999988888633
Q ss_pred ch-hhHHhhhcchhhhhcccc--cCcccEEEcCCCC
Q 002197 659 SQ-NDIMMTVFPMFQQHIEPH--LVHAHLKIRNDFD 691 (954)
Q Consensus 659 ~~-~q~~~~v~p~~~~~Iep~--~~~ADivI~n~~~ 691 (954)
+. ..++..+.|.+..|+.+. +++||+||+|+-.
T Consensus 177 ~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~~ 212 (223)
T PRK06696 177 EAEKMYLARYHPAQKLYIAEANPKERADVVIDNSDP 212 (223)
T ss_pred HHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCCC
Confidence 32 567777888888887554 7889999988753
No 32
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.85 E-value=3.1e-21 Score=206.77 Aligned_cols=162 Identities=15% Similarity=0.221 Sum_probs=135.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccc----cc-----------cCCC--CCcccHHHHHHHHHhh
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG----VD-----------EGND--LDSIDFDALVQNLQDL 121 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~----~~-----------~~~~--p~s~D~~~l~~~L~~l 121 (954)
+|||+|+|||||||+++.|++.|+ +.+|+.|+||+- +. +.++ |++.|+++|.++|..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 599999999999999999998874 678999999881 11 1234 8999999999999999
Q ss_pred hcCCccccccchhh----------hhccccccccccCCCcEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHHHHH
Q 002197 122 TEGKDTLIPMFDYQ----------QKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKV 187 (954)
Q Consensus 122 ~~g~~i~~p~~d~~----------~~~~~~~~~~~~~~~~vVIvEG~~ll~----~~l~~~~D~~I~Vda~~~~rl~Rri 187 (954)
+.|+.+..|.|+|. .+.+..+.. ...+.+++|+||++.+. ..+++++|++|||+++.+.++.|++
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~-~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWED-LPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCccc-ccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 99999999999873 233333322 23567899999998443 6899999999999999999999999
Q ss_pred HhccCCc-cCHHHHHHhh---chhhhhccCCCcCcccEEEECC
Q 002197 188 QYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 188 ~RD~~~r-~~~e~~~~~v---~p~~~~~Iep~~~~ADiII~N~ 226 (954)
.||..+| ++.+.+++++ .|.|.+||.|.+++||+++.--
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrmpdy~~yI~PQ~~~tDI~fqr~ 202 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRMPDYINYICPQFSRTDINFQRV 202 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhCchHHhhCCcccccCcEEEecc
Confidence 9999887 6888776654 5999999999999999998543
No 33
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.85 E-value=5.2e-21 Score=195.20 Aligned_cols=133 Identities=24% Similarity=0.309 Sum_probs=121.0
Q ss_pred ccccccccccceeccccCCCCcccccccCCceeEeeeC--CeEEEEEcceeccCCCccccceeEEEeeh----hHHHHHH
Q 002197 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL 325 (954)
Q Consensus 252 ~~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~--~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~~~~~L~ 325 (954)
.......|+|.||+.|.++++.++.++ |||..+ +++.+|||||..++.. |.+.|+|+.| +|.++|.
T Consensus 24 ~~~~~~~q~d~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~~~lT~K~~~~~~~~---~~~~E~e~~v~~~~~~~~iL~ 95 (169)
T cd07890 24 AEGGREFQEDIYFDHPDRDLAATDEAL-----RLRRMGDSGKTLLTYKGPKLDGGP---KVREEIETEVADPEAMKEILE 95 (169)
T ss_pred ccccceeEeEEEEcCCchhHHhCCCcE-----EEEEeCCCCcEEEEEECCCCCCCc---cceEEEEEecCCHHHHHHHHH
Confidence 344678999999999999999988888 999987 8999999999876533 8999999999 8999999
Q ss_pred hcCCceeEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEec------ChhHHHHHHHHcCCCCC-ccchhHHHH
Q 002197 326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT------NRKTVGAEALRMGINGP-WITKSYLEM 393 (954)
Q Consensus 326 ~LGf~~~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~------~~~~v~~~a~~Lgl~~~-~~~~sYlel 393 (954)
+|||.+..+++|.|.+|.+++++||||.|+|||. |+|||++ ..+.+..+++.||+.+. .+++||++|
T Consensus 96 ~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 96 RLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred HcCCceeEEEEEEEEEEEECCEEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 9999999999999999999999999999999999 9999998 34889999999999885 499999975
No 34
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.85 E-value=4.9e-21 Score=197.22 Aligned_cols=161 Identities=43% Similarity=0.645 Sum_probs=134.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh-----CCeEEecccccccc----c---cCCCCCcccHHHHHHHHHhhhcCCcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGV----D---EGNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L-----g~~VIs~Dd~y~~~----~---~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~ 131 (954)
+|||+|++||||||+|+.|++.+ ++.+|++|+||+.. . ..+.+..+|++.+.+.|..++.++.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999987 46899999999843 1 123345579999999999999999999999
Q ss_pred chhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHH-HHHHHHHhccCCc-cCHHHHHHh--hchh
Q 002197 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHF-SLISKVQYDIGDS-CSLDSLIDS--IFPL 207 (954)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~-rl~Rri~RD~~~r-~~~e~~~~~--v~p~ 207 (954)
||+.++.+.........+.++||+||++++++.+++++|++|||+++.+. ++.|++.||...+ .+.+..+.+ ..|.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~~ 160 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVPS 160 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcccccC
Confidence 99999988765445566788999999999999999999999999999998 9999999999777 566666554 3455
Q ss_pred hhhcc-CCCcCcccEEEE
Q 002197 208 FRKHI-EPDLHHAQIRIN 224 (954)
Q Consensus 208 ~~~~I-ep~~~~ADiII~ 224 (954)
++.++ .|.++.||+|++
T Consensus 161 ~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 161 GEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred chhhcCCCchhccceecc
Confidence 55555 667999999874
No 35
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.84 E-value=5.4e-21 Score=197.59 Aligned_cols=156 Identities=21% Similarity=0.291 Sum_probs=123.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh-CCceeccccccchhhh------ccccCCCCCcccHHHHHHHHHHHHcCCceecccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQV------KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L-g~~vIs~Ddfy~~~~~------~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (954)
+|||+|+|||||||+|+.|++.+ ++.+||+||||++... ..++|++|+++|++++.+.|..|++|+.+..|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58999999999999999999998 6999999999998431 3358999999999999999999999987666665
Q ss_pred cccccccCCc------------cceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccc-ccc-
Q 002197 592 DLETGARSGF------------KELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSR-MGC- 656 (954)
Q Consensus 592 D~~~~dr~~~------------~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~-rg~- 656 (954)
+....+.... .......+.++||+||.++++ +.+++++|++||+++|.+++++|++.||..- .+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 5544332110 112234567899999999987 7899999999999999999999999998443 111
Q ss_pred ccc-hhhHHhhhcchhhhh
Q 002197 657 FMS-QNDIMMTVFPMFQQH 674 (954)
Q Consensus 657 ~~~-~~q~~~~v~p~~~~~ 674 (954)
-.. ...+...|+|+|.+.
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 111 245667899999876
No 36
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.84 E-value=5.3e-21 Score=203.19 Aligned_cols=166 Identities=18% Similarity=0.270 Sum_probs=132.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC-------CeEEeccccccccc---------cCCCCCcccHHHHHHHHHhhhcC-Cc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVGVD---------EGNDLDSIDFDALVQNLQDLTEG-KD 126 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg-------~~VIs~Dd~y~~~~---------~~~~p~s~D~~~l~~~L~~l~~g-~~ 126 (954)
+|||+|++||||||+|+.|+..+. +.+|++|+||.... ..+.|+++|.+.+.+.|..++.| +.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999999883 57899999987422 35678999999999999999984 68
Q ss_pred cccccchhhhhccccccccccCCCcEEEEEecccchhh------hhcCCCEEEEEEcCHHHHHHHHHHhccC---Cc-cC
Q 002197 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR------LRSLLDIRVAVVGGVHFSLISKVQYDIG---DS-CS 196 (954)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~------l~~~~D~~I~Vda~~~~rl~Rri~RD~~---~r-~~ 196 (954)
+..|.||+..+++........++.++||+||+++++.. +++++|++|||++|.+++..|+.+|... ++ ++
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887665444567789999999999853 8999999999999999975555555332 11 11
Q ss_pred HH------------HH--------HHhhchhhhhccCCCcCcccEEEECCCCC
Q 002197 197 LD------------SL--------IDSIFPLFRKHIEPDLHHAQIRINNRFVS 229 (954)
Q Consensus 197 ~e------------~~--------~~~v~p~~~~~Iep~~~~ADiII~N~~~~ 229 (954)
.. ++ .+...|++.+||.|++..||+||..+.++
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~ 213 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH 213 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence 11 11 12357999999999999999999877443
No 37
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.84 E-value=1.7e-20 Score=197.48 Aligned_cols=167 Identities=31% Similarity=0.537 Sum_probs=140.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC---CeEEeccccccccc----------cCCCCCcccHHHHHHHHHhhhcCCc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKD 126 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg---~~VIs~Dd~y~~~~----------~~~~p~s~D~~~l~~~L~~l~~g~~ 126 (954)
.++.+|||+|++||||||||+.|++.++ +.++++|+||.... .++.|.++|++.+.+.|..+..+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 83 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA 83 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence 4689999999999999999999999983 67899999987321 2346788999999999999999999
Q ss_pred cccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHH--
Q 002197 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID-- 202 (954)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~-- 202 (954)
+..|.|++..+.+.... ....+.+++|+||+++++ +.+.+++|.+|||++|.++++.|++.|+...+ .+.+++.+
T Consensus 84 v~~p~~d~~~~~~~~~~-~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~ 162 (209)
T PRK05480 84 IEIPVYDYTEHTRSKET-IRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQY 162 (209)
T ss_pred cccCcccccccccCCCe-EEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHH
Confidence 99999999988875532 234556799999999997 68899999999999999999999999997554 35544433
Q ss_pred --hhchhhhhccCCCcCcccEEEECCC
Q 002197 203 --SIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 203 --~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
+..|.|.+|++|.+++||+||+|+.
T Consensus 163 ~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 163 LSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HHhhhhhHHhhccHhhcceeEEecCCC
Confidence 4579999999999999999999874
No 38
>PRK06696 uridine kinase; Validated
Probab=99.83 E-value=1.2e-19 Score=193.13 Aligned_cols=170 Identities=23% Similarity=0.264 Sum_probs=133.9
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHh---CCeE--Eecccccccccc-----CCC-----CCcccHHHHHHHHHhhh
Q 002197 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTL--ISMENYRVGVDE-----GND-----LDSIDFDALVQNLQDLT 122 (954)
Q Consensus 58 ~~~~~~IIgItG~sGSGKSTlA~~La~~L---g~~V--Is~Dd~y~~~~~-----~~~-----p~s~D~~~l~~~L~~l~ 122 (954)
..+++++|||+|++||||||+|+.|++.| |..+ +++|+||.+... ... .+++|++.|.+.+....
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 46679999999999999999999999999 5555 569999985321 112 26899999999988753
Q ss_pred -cCC--ccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCcc----
Q 002197 123 -EGK--DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC---- 195 (954)
Q Consensus 123 -~g~--~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~---- 195 (954)
.+. .+..|.|++..+..........++..+||+||+++++..+..++|.+|||++|.++++.|++.|+...++
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~ 177 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEE 177 (223)
T ss_pred cCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchH
Confidence 332 3566788887776553333344566799999999999999999999999999999999999999854432
Q ss_pred CHHHHHHhhchhhhhccCCC--cCcccEEEECCC
Q 002197 196 SLDSLIDSIFPLFRKHIEPD--LHHAQIRINNRF 227 (954)
Q Consensus 196 ~~e~~~~~v~p~~~~~Iep~--~~~ADiII~N~~ 227 (954)
....+++++.+.++.|+.+. +++||+||+|+.
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 34556778889989987665 899999999984
No 39
>PRK07667 uridine kinase; Provisional
Probab=99.82 E-value=6.3e-20 Score=191.19 Aligned_cols=172 Identities=17% Similarity=0.263 Sum_probs=131.8
Q ss_pred HHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccchhhhc-cccCCC-----CCcccHHHHHH-
Q 002197 508 QALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVK-DFKYDD-----FSSLDLSLLSK- 575 (954)
Q Consensus 508 ~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~~~~~~-~~n~d~-----p~t~D~~lL~~- 575 (954)
+.+....+.+++|||+|++||||||+|+.|++.++ +.++|+||||.+.... ..++.. ..++|++.|.+
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~ 87 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQK 87 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHH
Confidence 34444566779999999999999999999999873 6699999999874321 111111 23578888876
Q ss_pred HHHHHHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccc
Q 002197 576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (954)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg 655 (954)
.+..|+.++.+.+|.||+..+.+.. .....++.+++|+||++++++.+.+++|.+|||++|.+.++.|++.|+.
T Consensus 88 v~~~L~~~~~i~~P~~d~~~~~~~~--~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~---- 161 (193)
T PRK07667 88 FFRKLQNETKLTLPFYHDETDTCEM--KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ---- 161 (193)
T ss_pred HHHhhcCCCeEEEeeeccccccccc--cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH----
Confidence 4688999999999999999976553 2222345799999999998888999999999999999999999998762
Q ss_pred cccchhhHHhhhcchhhhhccc--ccCcccEEEc
Q 002197 656 CFMSQNDIMMTVFPMFQQHIEP--HLVHAHLKIR 687 (954)
Q Consensus 656 ~~~~~~q~~~~v~p~~~~~Iep--~~~~ADivI~ 687 (954)
.+ ..++.....|.+..|+.. .+.+||+||+
T Consensus 162 ~~--~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 162 KN--LSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred hH--HHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 22 235666666888888662 2788999874
No 40
>PRK15453 phosphoribulokinase; Provisional
Probab=99.82 E-value=1e-19 Score=196.55 Aligned_cols=165 Identities=16% Similarity=0.269 Sum_probs=134.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecccccc-c---cc-----------cCCC--CCcccHHHHHHH
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV-G---VD-----------EGND--LDSIDFDALVQN 117 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~-~---~~-----------~~~~--p~s~D~~~l~~~ 117 (954)
.++.+|||+|+|||||||+|+.|++.|+ +.+|+.|+||+ . +. +.+. |++.|+++|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4568999999999999999999998884 67899999986 2 10 2234 899999999999
Q ss_pred HHhhhcCCccccccchhhh-----hcccccc----ccccCCCcEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHH
Q 002197 118 LQDLTEGKDTLIPMFDYQQ-----KNRIGSK----VIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLI 184 (954)
Q Consensus 118 L~~l~~g~~i~~p~~d~~~-----~~~~~~~----~~~~~~~~vVIvEG~~ll~----~~l~~~~D~~I~Vda~~~~rl~ 184 (954)
|..++.++.+..|.|++.. +.+.... ....++.+++|+||++.+. ..++.++|++|||+.+.+.++.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 9999998888888876432 3322111 1223567899999999874 5789999999999999999999
Q ss_pred HHHHhccCCc-cCHHHHHHhh---chhhhhccCCCcCcccEEEE
Q 002197 185 SKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRIN 224 (954)
Q Consensus 185 Rri~RD~~~r-~~~e~~~~~v---~p~~~~~Iep~~~~ADiII~ 224 (954)
|++.||..+| ++.+.+++++ .|.|.+||.|++++||+++.
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrrmPdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRRMPDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHhCChHhhhCCCCcccCcEEEE
Confidence 9999999887 6888776654 69999999999999999763
No 41
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.82 E-value=8e-20 Score=194.54 Aligned_cols=164 Identities=20% Similarity=0.279 Sum_probs=143.3
Q ss_pred cccCCcccchh---hhHHHHHHHHHHHH----------------hcCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----
Q 002197 32 LQSLPVHASFD---HGYYLLVKSIQELR----------------EKKGGIVTVGIGGPSGSGKTSLAEKLASVIG----- 87 (954)
Q Consensus 32 ~~~~~~~~s~d---~~~~~lv~~i~~~~----------------~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg----- 87 (954)
+.++++++|++ +.|.+|+++++.+. .+...|++|||+|++|+||||+|+.|+..+.
T Consensus 33 ~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 33 LRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 47999999955 49999999887653 1355689999999999999999999999884
Q ss_pred --CeEEeccccccc---------cccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCCcEEEE
Q 002197 88 --CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIV 155 (954)
Q Consensus 88 --~~VIs~Dd~y~~---------~~~~~~p~s~D~~~l~~~L~~l~~g~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVIv 155 (954)
+.+|.||+|+.+ +..+|.|++||...+.+++..++.+.+ +..|.|+|.+++.++......+..+++|+
T Consensus 113 ~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~ 192 (283)
T COG1072 113 PKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIV 192 (283)
T ss_pred CceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEE
Confidence 689999999553 446789999999999999999998766 99999999999999888888888999999
Q ss_pred Eecccchh-----hhhcCCCEEEEEEcCHHHHHHHHHHhccCCcc
Q 002197 156 DGTYALDA-----RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC 195 (954)
Q Consensus 156 EG~~ll~~-----~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~ 195 (954)
||++++.. .+.++||++||||++.+....|.+.|-...+.
T Consensus 193 EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~ 237 (283)
T COG1072 193 EGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGL 237 (283)
T ss_pred echhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhccc
Confidence 99999982 56789999999999999999999999877663
No 42
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.82 E-value=1e-19 Score=186.58 Aligned_cols=132 Identities=19% Similarity=0.337 Sum_probs=120.0
Q ss_pred hhhcccccccCCCCCCCCCcCCcc-eEEEEeeCCEEEEEeeccccccCcccccceeEEeh--hhHHHHHHHhCceeeeee
Q 002197 727 AQNFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYI 803 (954)
Q Consensus 727 v~~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~--~~~~~~l~~lg~~~~~~~ 803 (954)
.....|+||..| ++.+..++ |||+|+.++++.||||+|+.|+.+++|+++|++|+ ..|.++|.+|||++++.+
T Consensus 30 ~~~q~D~Yfd~p----~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v 105 (174)
T TIGR00318 30 KEFQHDIYFSNP----CRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQILKKLGFKKVYEV 105 (174)
T ss_pred ccceEEEeecCC----CcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHHHHHCCCeEEEEE
Confidence 445789999988 56665554 99999998999999999999999999999999994 899999999999999999
Q ss_pred eeeeEEeecCcEEEEEecccCCCCceEEEeccc---------HHHHHHHHhhcCCCCCccchhHHHHHH
Q 002197 804 EASAFIYQDGKILIEVDHLQDAPSPYLQIKGVD---------KEAVAAAGSTLKLDGSYTTKSYLQIIL 863 (954)
Q Consensus 804 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---------~~~v~~~~~~l~~~~~~~~~syle~~~ 863 (954)
+|.|++|..++++|++|++++|| +|+||-+.. ++.+.+++++|||.+..+++||+||++
T Consensus 106 ~K~R~~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~ 173 (174)
T TIGR00318 106 IKKRRIYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLS 173 (174)
T ss_pred EEEEEEEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhh
Confidence 99999999999999999999999 999996654 368999999999999999999999864
No 43
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.81 E-value=2.1e-19 Score=187.61 Aligned_cols=165 Identities=32% Similarity=0.540 Sum_probs=138.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEeccccccccc----------cCCCCCcccHHHHHHHHHhhhcCCccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKDTLIP 130 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g~~VIs~Dd~y~~~~----------~~~~p~s~D~~~l~~~L~~l~~g~~i~~p 130 (954)
+|||+|++||||||+|+.|+..+ ++.++++|+||..+. .++.+.+++.+.+.+.|..+..++.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 378999999986432 24567789999999999999999999999
Q ss_pred cchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHH----HHhh
Q 002197 131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSL----IDSI 204 (954)
Q Consensus 131 ~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~----~~~v 204 (954)
.|++..+.+..... ...+.+++|+||+++++ +.+.+.+|.+|||++|.+.++.|++.||...+ .+.+.. ..+.
T Consensus 81 ~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKETV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 99999988765433 45567899999999998 67888999999999999999999999997554 344433 3445
Q ss_pred chhhhhccCCCcCcccEEEECCCCC
Q 002197 205 FPLFRKHIEPDLHHAQIRINNRFVS 229 (954)
Q Consensus 205 ~p~~~~~Iep~~~~ADiII~N~~~~ 229 (954)
.+.+..|++|++.+||+||+|+-.+
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~~ 184 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGDN 184 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCCc
Confidence 7899999999999999999988554
No 44
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.80 E-value=3e-19 Score=190.20 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=145.5
Q ss_pred ccccccceecccCCCcCCCccccCCCcccceecccCCCCccchhhhHH----------HHHHHHHHH---------HcCC
Q 002197 455 EPVLATWHFISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLL----------SVQAIQALL---------ENKG 515 (954)
Q Consensus 455 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~----------~i~~i~~l~---------~~~~ 515 (954)
.....+|+.++.+.+.++++ .+-..+..+.++++++|.-.. .+.+.+.+. .+..
T Consensus 8 ~~~~~~w~~~~~~~~~~lt~-------~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (283)
T COG1072 8 IFSREQWAALRASTPLTLTE-------EELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQ 80 (283)
T ss_pred EechhhhhhhhhcCccccCH-------HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 46788999778777777776 333334445555554443221 111111110 2456
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-------Cceeccccccchhhh----ccc-cCCCCCcccHHHHHHHHHHHHcC
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNG 583 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg-------~~vIs~Ddfy~~~~~----~~~-n~d~p~t~D~~lL~~~L~~L~~g 583 (954)
.|+||||+|+.|+||||+|+.|+..+. +.++.||.|..+... +-. ..+-|.++|...|.+.+..+++|
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~ 160 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAG 160 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcC
Confidence 799999999999999999999999873 679999999887432 111 23569999999999999999988
Q ss_pred Cc-eecccccccccccCCccceeeccCccEEEEEeecccc---h--hhhhcCCeEEEEEcChhHHHHHHHhcCccccc
Q 002197 584 RR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH---P--EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (954)
Q Consensus 584 ~~-v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~---~--~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg 655 (954)
.+ +.+|.||+.+++..+. +..+....+|+|+||++++. | .+.+.+|+.||||++.+.-..|.+.|....+-
T Consensus 161 ~~~v~aPvysh~~yD~vpd-~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~ 237 (283)
T COG1072 161 KPDVFAPVYSHLIYDPVPD-AFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGL 237 (283)
T ss_pred CCccccccccccccccCCC-ceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhccc
Confidence 76 9999999999998863 45566778999999999986 3 46789999999999999999999999765543
No 45
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.80 E-value=9.3e-19 Score=187.15 Aligned_cols=183 Identities=20% Similarity=0.233 Sum_probs=142.1
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cce-eccccccchhhhc-c----ccCCCCCcccHHHH
Q 002197 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEV-VSLESYFKSEQVK-D----FKYDDFSSLDLSLL 573 (954)
Q Consensus 505 ~~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~v-Is~Ddfy~~~~~~-~----~n~d~p~t~D~~lL 573 (954)
..+..+....+++.+|||+|++|||||||++.|+..+. +.+ +++|+||.+.... . ..++.|.++|.+.+
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~ 100 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGL 100 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHH
Confidence 33444445667899999999999999999999998874 345 9999999874321 1 13467899999999
Q ss_pred HHHHHHHHcCC-ceecccccccccccCCccceeeccCccEEEEEeecccc-----hhhhhcCCeEEEEEcChhHHHHHHH
Q 002197 574 SKNISDIRNGR-RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRV 647 (954)
Q Consensus 574 ~~~L~~L~~g~-~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~Rri 647 (954)
.+.+..++.|. .+.+|.||+..+..... ........+++|+||.+++. +.+.+.+|..||+++|.+.++.|.+
T Consensus 101 ~~~l~~l~~~~~~i~~P~yD~~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~ 179 (229)
T PRK09270 101 AALLRRLRAGDDEVYWPVFDRSLEDPVAD-AIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLV 179 (229)
T ss_pred HHHHHHHHcCCCceecccCCcccCCCCCC-ceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHH
Confidence 99999999987 89999999998775532 22222356899999999875 3577899999999999999999999
Q ss_pred hcCccccccccch-hhHH-hhhcchhhhhcccccCcccEEEcCCC
Q 002197 648 QRDKSRMGCFMSQ-NDIM-MTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 648 ~RD~~~rg~~~~~-~q~~-~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
.|+. .+|.+.+. .+.+ ....|.+ .||.|.+..||+||+|+-
T Consensus 180 ~R~~-~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 180 ARKL-AGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTA 222 (229)
T ss_pred HHHH-hcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecC
Confidence 9964 45665543 2333 3456666 689999999999999874
No 46
>PRK07667 uridine kinase; Provisional
Probab=99.80 E-value=4.5e-19 Score=184.77 Aligned_cols=165 Identities=16% Similarity=0.231 Sum_probs=131.8
Q ss_pred HhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecccccccccc---CCCC-------CcccHHHHHHH-HH
Q 002197 56 REKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDE---GNDL-------DSIDFDALVQN-LQ 119 (954)
Q Consensus 56 ~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~~~~---~~~p-------~s~D~~~l~~~-L~ 119 (954)
....+.+++|||+|++||||||+|+.|++.++ +.++++|+|+..... .+.+ ..+|.+.+... +.
T Consensus 11 ~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~ 90 (193)
T PRK07667 11 KKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFR 90 (193)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHH
Confidence 34456679999999999999999999999873 569999999875331 1111 24677777765 46
Q ss_pred hhhcCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHH
Q 002197 120 DLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (954)
Q Consensus 120 ~l~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~ 199 (954)
.+..++.+.+|.|++..+..... ....++.+++|+||+++++..+.+++|.+|||++|.+.++.|.+.|+. .+.+.
T Consensus 91 ~L~~~~~i~~P~~d~~~~~~~~~-~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~---~~~~~ 166 (193)
T PRK07667 91 KLQNETKLTLPFYHDETDTCEMK-KVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ---KNLSK 166 (193)
T ss_pred hhcCCCeEEEeeecccccccccc-ceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH---hHHHH
Confidence 77888899999999988765543 233455689999999999999999999999999999999999998763 46677
Q ss_pred HHHhhchhhhhccCC--CcCcccEEEE
Q 002197 200 LIDSIFPLFRKHIEP--DLHHAQIRIN 224 (954)
Q Consensus 200 ~~~~v~p~~~~~Iep--~~~~ADiII~ 224 (954)
+++++++.+..|++. .+.+||+||+
T Consensus 167 ~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 167 FKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 888888999999754 2888999984
No 47
>PRK07429 phosphoribulokinase; Provisional
Probab=99.79 E-value=5.1e-19 Score=197.86 Aligned_cols=166 Identities=25% Similarity=0.384 Sum_probs=137.6
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC---CeEEecccccccc----cc----CCCCCcccHHHHHHHHHhhhcCCcc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----DE----GNDLDSIDFDALVQNLQDLTEGKDT 127 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg---~~VIs~Dd~y~~~----~~----~~~p~s~D~~~l~~~L~~l~~g~~i 127 (954)
.+++++|||+|++||||||+++.|+..++ +.++++|+|+... .. .-.|.+.+++.+.+.+..++.|+.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 56789999999999999999999999987 6799999986410 00 1246678889999999999999999
Q ss_pred ccccchhhhhccccccccccCCCcEEEEEecccc-hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHH---HHH
Q 002197 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDS---LID 202 (954)
Q Consensus 128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll-~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~---~~~ 202 (954)
.+|.|++.++...... ...+.++||+||++++ ...+++++|++|||+++.+.++.|+++|+...+ .+.++ .++
T Consensus 85 ~~P~yd~~~g~~~~~~--~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~ 162 (327)
T PRK07429 85 LKPIYNHETGTFDPPE--YIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIE 162 (327)
T ss_pred ecceeecCCCCcCCcE--ecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999999988765432 2345689999999855 467889999999999999999999999998765 34444 455
Q ss_pred hhchhhhhccCCCcCcccEEEECC
Q 002197 203 SIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 203 ~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
.+.|.+.+||+|.++.||+||++.
T Consensus 163 ~r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 163 AREPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HhCccHhhhhcccccCCCEEEEcC
Confidence 679999999999999999999888
No 48
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.79 E-value=9.6e-19 Score=184.12 Aligned_cols=170 Identities=32% Similarity=0.524 Sum_probs=139.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC---CeEEeccccccccc----------cCCCCCcccHHHHHHHHHhhhcCC
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGK 125 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg---~~VIs~Dd~y~~~~----------~~~~p~s~D~~~l~~~L~~l~~g~ 125 (954)
+++..+|||+|++||||||+++.|+..++ +.++++|+|+.... ..+.+.++|.+.+.+.|..+..|.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 34568999999999999999999998885 67999999876321 133577889999999999999999
Q ss_pred ccccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHH--
Q 002197 126 DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLI-- 201 (954)
Q Consensus 126 ~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~-- 201 (954)
.+.+|.|++..+.+... ....++.+++|+||.+++. +.+.+.+|.+|||+++.+.++.|++.|+...+ .+.+...
T Consensus 83 ~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~ 161 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQ 161 (207)
T ss_pred CEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999987776433 3344567899999999975 67888999999999999999999999997654 3444333
Q ss_pred --HhhchhhhhccCCCcCcccEEEECCCCC
Q 002197 202 --DSIFPLFRKHIEPDLHHAQIRINNRFVS 229 (954)
Q Consensus 202 --~~v~p~~~~~Iep~~~~ADiII~N~~~~ 229 (954)
....|.+..|++|.+.+||+||+|+-.+
T Consensus 162 ~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~ 191 (207)
T TIGR00235 162 YRKTVRPMYEQFVEPTKQYADLIIPEGGRN 191 (207)
T ss_pred HHHhhhhhHHHhCcccccccEEEEcCCCCc
Confidence 3457889999999999999999987543
No 49
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.78 E-value=3.8e-18 Score=182.47 Aligned_cols=184 Identities=20% Similarity=0.334 Sum_probs=146.6
Q ss_pred hhhHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeE-Eecccccccc---------ccCCCC
Q 002197 42 DHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTL-ISMENYRVGV---------DEGNDL 106 (954)
Q Consensus 42 d~~~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~V-Is~Dd~y~~~---------~~~~~p 106 (954)
...+.+|++.+..+....+++.+|||+|++|||||||++.|+..+. +.+ +++|+||... ...+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~ 92 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAP 92 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCC
Confidence 3467778888887777778899999999999999999999998874 345 9999998631 224567
Q ss_pred CcccHHHHHHHHHhhhcCC-ccccccchhhhhccccccccccCCCcEEEEEecccch-----hhhhcCCCEEEEEEcCHH
Q 002197 107 DSIDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAVVGGVH 180 (954)
Q Consensus 107 ~s~D~~~l~~~L~~l~~g~-~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-----~~l~~~~D~~I~Vda~~~ 180 (954)
+++|.+.+.+.+..++.+. .+..|.|++..+..........+..+++|+||.+++. ..+.+.+|.+|||++|.+
T Consensus 93 ~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~ 172 (229)
T PRK09270 93 ETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAE 172 (229)
T ss_pred CCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHH
Confidence 8899999999999999887 8999999998877665433333456799999999975 356789999999999999
Q ss_pred HHHHHHHHhccCCccCHH---HHHH-hhchhhhhccCCCcCcccEEEECC
Q 002197 181 FSLISKVQYDIGDSCSLD---SLID-SIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 181 ~rl~Rri~RD~~~r~~~e---~~~~-~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
.++.|...|+...+.+.+ ..+. +++|.+ .|++|.+++||+||.|+
T Consensus 173 ~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 173 VLRERLVARKLAGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMT 221 (229)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEec
Confidence 999999999643333433 3343 456766 68899999999999998
No 50
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.77 E-value=2.3e-18 Score=188.50 Aligned_cols=161 Identities=24% Similarity=0.374 Sum_probs=132.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEecccccccc----c----cCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV----D----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g~~VIs~Dd~y~~~----~----~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~ 132 (954)
+|||+|++||||||+++.|+..+ ++.++++|+|++.. . ....|++.+++.+.+.+..++.++.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999887 46799999997521 0 1124667778889999999999999999999
Q ss_pred hhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHH---hhchh
Q 002197 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID---SIFPL 207 (954)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~---~v~p~ 207 (954)
++..+...... ...+.+++|+||++++. ..+++++|++|||+++.+.++.|+++|+...+ .+.+++++ ...|.
T Consensus 81 ~~~~~~~~~~~--~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~ 158 (273)
T cd02026 81 NHVTGLIDPPE--LIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPD 158 (273)
T ss_pred cccCCCcCCcE--EcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchh
Confidence 99987654322 23456899999999765 68999999999999999999999999998765 45555544 45899
Q ss_pred hhhccCCCcCcccEEEECC
Q 002197 208 FRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 208 ~~~~Iep~~~~ADiII~N~ 226 (954)
+.+||+|.+.+||+||.+.
T Consensus 159 ~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 159 FEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred HHHHhccccccCcEEEEcc
Confidence 9999999999999999876
No 51
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.76 E-value=2e-18 Score=178.51 Aligned_cols=147 Identities=20% Similarity=0.269 Sum_probs=116.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh-CCeEEecccccccc----------ccCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L-g~~VIs~Dd~y~~~----------~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~ 132 (954)
+|||+|++||||||+|+.|++.+ ++.+|++|+||+.. .+++.|+++|.+++.+.|..++.++.+..+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 59999999999999999999998 69999999998843 24667999999999999999999876555544
Q ss_pred hhhhhccc-------------cccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc----
Q 002197 133 DYQQKNRI-------------GSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---- 194 (954)
Q Consensus 133 d~~~~~~~-------------~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r---- 194 (954)
++...... .......++.++||+||.+++. +.+++++|++|||++|.++++.|++.|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 44332211 1122334567899999999988 78999999999999999999999999986551
Q ss_pred --cCHHHHHHhhchhhhh
Q 002197 195 --CSLDSLIDSIFPLFRK 210 (954)
Q Consensus 195 --~~~e~~~~~v~p~~~~ 210 (954)
..+..+.+.++|+|.+
T Consensus 161 w~Dp~~yf~~~v~p~y~~ 178 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLK 178 (187)
T ss_pred cCCCCcccccccchhHHH
Confidence 2444455667888887
No 52
>PRK06547 hypothetical protein; Provisional
Probab=99.75 E-value=1.6e-17 Score=170.04 Aligned_cols=153 Identities=21% Similarity=0.173 Sum_probs=120.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (954)
.+.+.+|+|+|++||||||+|+.|++.+++.++++|+||.+. ++. ..+...+.+.+.. .|++...| ||+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~-------~~~-~~~~~~l~~~~l~--~g~~~~~~-yd~ 80 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW-------HGL-AAASEHVAEAVLD--EGRPGRWR-WDW 80 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc-------ccC-ChHHHHHHHHHHh--CCCCceec-CCC
Confidence 577899999999999999999999999999999999999742 111 1234556665555 77788888 999
Q ss_pred cccccCCccceeeccCccEEEEEeecccchhhhhcCC-----eEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhc
Q 002197 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF 668 (954)
Q Consensus 594 ~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D-----~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~ 668 (954)
..+.+.. +....+.++||+||.+++++.+++.+| ++||+++|.+.|+.|++.||.. ...++....
T Consensus 81 ~~~~~~~---~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-------~~~~~~~w~ 150 (172)
T PRK06547 81 ANNRPGD---WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-------YAPHWEMWA 150 (172)
T ss_pred CCCCCCC---cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-------hhHHHHHHH
Confidence 9776542 223456789999999999988999999 9999999999999999999953 234566677
Q ss_pred chhhhhcc--cccCcccEEEc
Q 002197 669 PMFQQHIE--PHLVHAHLKIR 687 (954)
Q Consensus 669 p~~~~~Ie--p~~~~ADivI~ 687 (954)
+.++.|++ +.+.+||+++.
T Consensus 151 ~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 151 AQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHhcCCChhccEEEec
Confidence 78888876 44678998864
No 53
>PRK06547 hypothetical protein; Provisional
Probab=99.74 E-value=3.2e-17 Score=167.84 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=123.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
...+.+|+|+|++||||||+|+.|++.+++.++++|+||.++... ..+.+.+...+.. .|+...++ |++..+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~----~~~~~~l~~~~l~--~g~~~~~~-yd~~~~~ 84 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGL----AAASEHVAEAVLD--EGRPGRWR-WDWANNR 84 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccC----ChHHHHHHHHHHh--CCCCceec-CCCCCCC
Confidence 577899999999999999999999999999999999999765332 1234455555554 56666677 8887665
Q ss_pred cccccccccCCCcEEEEEecccchhhhhcCCC-----EEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhhhccC
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIE 213 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D-----~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~Ie 213 (954)
.... ....+.+++|+||.+++...+++.+| +.|||++|.++++.|++.||.. ...++++|.+.++.|++
T Consensus 85 ~~~~--~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~----~~~~~~~w~~~e~~~~~ 158 (172)
T PRK06547 85 PGDW--VSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD----YAPHWEMWAAQEERHFA 158 (172)
T ss_pred CCCc--EEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch----hhHHHHHHHHHHHHHHh
Confidence 4332 22345579999999999888889999 9999999999999999999953 66788999999999996
Q ss_pred CC--cCcccEEEE
Q 002197 214 PD--LHHAQIRIN 224 (954)
Q Consensus 214 p~--~~~ADiII~ 224 (954)
.+ +.+||+|+.
T Consensus 159 ~~~~~~~ad~~~~ 171 (172)
T PRK06547 159 RYDPRDVADWLGS 171 (172)
T ss_pred cCCChhccEEEec
Confidence 54 899999874
No 54
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.73 E-value=4.6e-18 Score=175.07 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=114.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC-----------------CCCcccHHHHHHHHHhhh---
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDLT--- 122 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~-----------------~p~s~D~~~l~~~L~~l~--- 122 (954)
++|||||++||||||+++.|++ +|++++++|.+.+.+...+ .-+.+|...|.+.++.-.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999988 9999999999866433221 125678888877766432
Q ss_pred -cCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHH
Q 002197 123 -EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI 201 (954)
Q Consensus 123 -~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~ 201 (954)
.-+.+.||............. ....++++|.+++++.++...||.+|+|++|.++++.|.+.|+.........++
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~----~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri 155 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRN----KSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARI 155 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----HSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhc----cCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHH
Confidence 223456676655554443321 122799999999999999999999999999999999999999987777888888
Q ss_pred HhhchhhhhccCCCcCcccEEEECC
Q 002197 202 DSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 202 ~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
+.++|..++ ++.||+||+|+
T Consensus 156 ~~Q~~~~~k-----~~~ad~vI~N~ 175 (180)
T PF01121_consen 156 ASQMPDEEK-----RKRADFVIDNN 175 (180)
T ss_dssp HTS--HHHH-----HHH-SEEEE-S
T ss_pred HhCCCHHHH-----HHhCCEEEECC
Confidence 899999998 79999999998
No 55
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=1.7e-17 Score=192.99 Aligned_cols=177 Identities=24% Similarity=0.423 Sum_probs=157.7
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC----------Cceeccccccch--------hhhccccCCCCCcccHHHHHH
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYFKS--------EQVKDFKYDDFSSLDLSLLSK 575 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg----------~~vIs~Ddfy~~--------~~~~~~n~d~p~t~D~~lL~~ 575 (954)
...|++||+.|+++|||||++..+...++ +..+++|.||+. ...+.++|++|+++|.+++..
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~ 120 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYL 120 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHH
Confidence 45799999999999999999999988876 446788889986 123468899999999999999
Q ss_pred HHHHHHcCCceecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCcccc
Q 002197 576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 654 (954)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~r 654 (954)
.++.+++|..+.+|.||+.++.+.+. .+....+.+++|+||++.++ ++.+++++.++|++++.+.++.|++.||..++
T Consensus 121 ~~~~~~kg~~v~ip~y~~~~~~~~~~-~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 121 TLKNLKKGKAVEIPVYDFVTHSRDEE-KTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHhcccccceeeceeeeeecccCCCC-ceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 99999999999999999999999753 34556788999999999997 78999999999999999999999999999999
Q ss_pred ccccch--hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 655 g~~~~~--~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
|+.++. .||..++.|.|..||+|.+++||++|+...+
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~ 238 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGD 238 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecccc
Confidence 999986 6888899999999999999999999986543
No 56
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.69 E-value=8.4e-17 Score=168.58 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=123.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC-----------C----CCCcccHHHHHHHHHhhhc-
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------N----DLDSIDFDALVQNLQDLTE- 123 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~-----------~----~p~s~D~~~l~~~L~~l~~- 123 (954)
..|++|||||++||||||+++.|++.+|+.++++|.+.+.+... + ..+.+|...|.+.++.-..
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 35789999999999999999999988999999999976543211 1 1256888888877665322
Q ss_pred ---CCccccccchhhhhccccccccccCCCcEEEEEecccchhhh--hcCCCEEEEEEcCHHHHHHHHHHhccCCccCHH
Q 002197 124 ---GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARL--RSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLD 198 (954)
Q Consensus 124 ---g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l--~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e 198 (954)
-+.+.||............ ....++++|.+++++.++ ...||.+|+|+||.++++.|.+.|+...+....
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~-----~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~ 158 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKE-----SDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAV 158 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-----cCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 2346677666555443322 133589999999999765 578999999999999999999999987777777
Q ss_pred HHHHhhchhhhhccCCCcCcccEEEECCC
Q 002197 199 SLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 199 ~~~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
.+++.++|..++ ++.||+||+|+-
T Consensus 159 ~ri~~Q~~~eek-----~~~aD~VI~N~g 182 (204)
T PRK14733 159 AFINLQISDKER-----EKIADFVIDNTE 182 (204)
T ss_pred HHHHhCCCHHHH-----HHhCCEEEECcC
Confidence 888888998888 899999999993
No 57
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.68 E-value=1e-16 Score=172.14 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=118.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC-----------------CCCcccHHHHHHHHHhh---
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL--- 121 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~-----------------~p~s~D~~~l~~~L~~l--- 121 (954)
|++|||||++||||||+++.|++.+|++|||+|...+.+.+.+ ..+.+|+..|.+.++.-
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 5799999999999999999999888999999999866432211 13578888888876653
Q ss_pred -hcCCccccccchhhhhccccc-------cccccCCCcEEEEEecccchhhh-hcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002197 122 -TEGKDTLIPMFDYQQKNRIGS-------KVIKGASSGVVIVDGTYALDARL-RSLLDIRVAVVGGVHFSLISKVQYDIG 192 (954)
Q Consensus 122 -~~g~~i~~p~~d~~~~~~~~~-------~~~~~~~~~vVIvEG~~ll~~~l-~~~~D~~I~Vda~~~~rl~Rri~RD~~ 192 (954)
..-+.+.||............ .........++|+|.+++++.++ ...||.+|+|++|.++++.|.+.|+..
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~ 160 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNGF 160 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence 222346677654443332211 00111223599999999999875 468999999999999999999999865
Q ss_pred CccCHHHHHHhhchhhhhccCCCcCcccEEEECC
Q 002197 193 DSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 193 ~r~~~e~~~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
.....+..++.+++...+ +..||+||+|+
T Consensus 161 s~eea~~Ri~~Q~~~~ek-----~~~aD~VI~N~ 189 (244)
T PTZ00451 161 SKEEALQRIGSQMPLEEK-----RRLADYIIEND 189 (244)
T ss_pred CHHHHHHHHHhCCCHHHH-----HHhCCEEEECC
Confidence 556666667667776665 79999999998
No 58
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.68 E-value=8.7e-17 Score=165.60 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=117.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC------------C-----CCCcccHHHHHHHHHhh----h
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG------------N-----DLDSIDFDALVQNLQDL----T 122 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~------------~-----~p~s~D~~~l~~~L~~l----~ 122 (954)
+|||+|++||||||+++.|++ +|+++|++|.+.+.+... + ..+.+|...+.+.++.- .
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999998 899999999987643221 1 12567888888777652 2
Q ss_pred cCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002197 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (954)
Q Consensus 123 ~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~ 202 (954)
..+.+.||.+.......... .....++|+|++++++..+...||.+|||++|.+.++.|.+.|+..........++
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~----~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~ 155 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAE----ARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIA 155 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----ccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23456777776665444322 12236999999999999999999999999999999999999999765555555566
Q ss_pred hhchhhhhccCCCcCcccEEEECCC
Q 002197 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 203 ~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
.+++...+ +..||+||+|+.
T Consensus 156 ~Q~~~~~~-----~~~aD~vI~N~~ 175 (179)
T cd02022 156 SQMPLEEK-----RARADFVIDNSG 175 (179)
T ss_pred hcCCHHHH-----HHhCCEEEECcC
Confidence 66665544 789999999983
No 59
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.67 E-value=1.2e-16 Score=166.77 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=115.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC-----------------CCC-cccHHHHHHHHHhhhc-
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLD-SIDFDALVQNLQDLTE- 123 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~-----------------~p~-s~D~~~l~~~L~~l~~- 123 (954)
++|||+|++||||||+|+.|++.+|++++|+|.+.+.+...+ ..+ .+|...+.+.++.-..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 579999999999999999999988999999999866432211 124 5777777766554222
Q ss_pred ---CCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002197 124 ---GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (954)
Q Consensus 124 ---g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~ 200 (954)
-+.+.||............ .....++++|.+++++.++...||.+|||++|.++++.|.+.|+..........
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~----~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~r 157 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQ----LKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEAR 157 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHh----cCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 1234556544443333211 223469999999999999999999999999999999999999986555555555
Q ss_pred HHhhchhhhhccCCCcCcccEEEECCC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
++.+++...+ +..||+||+|+.
T Consensus 158 i~~Q~~~~~k-----~~~aD~vI~N~g 179 (195)
T PRK14730 158 INAQWPLEEK-----VKLADVVLDNSG 179 (195)
T ss_pred HHhCCCHHHH-----HhhCCEEEECCC
Confidence 5666665544 789999999984
No 60
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.66 E-value=1.9e-16 Score=165.26 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=116.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC------------C-----CCCcccHHHHHHHHHhhhc-
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG------------N-----DLDSIDFDALVQNLQDLTE- 123 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~------------~-----~p~s~D~~~l~~~L~~l~~- 123 (954)
|++|||+|++||||||+++.|++ +|+++|++|.+.+..... + ..+.+|...|.+.++.-..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 57899999999999999999998 999999999986643211 1 1346788877777664322
Q ss_pred ---CCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002197 124 ---GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (954)
Q Consensus 124 ---g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~ 200 (954)
-+.+.||............ .....++|+|++++++.++...||.+|+|++|.++++.|...|+..+.......
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~----~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r 156 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQE----AESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2345666555544333221 122369999999999999999999999999999999999999976555555555
Q ss_pred HHhhchhhhhccCCCcCcccEEEECCC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
++.+++...+ ...||+||+|+.
T Consensus 157 i~~Q~~~~~~-----~~~ad~vI~N~g 178 (194)
T PRK00081 157 IASQMPREEK-----LARADDVIDNNG 178 (194)
T ss_pred HHHhCCHHHH-----HHhCCEEEECCC
Confidence 6666666554 688999999983
No 61
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.65 E-value=1.4e-16 Score=161.75 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=128.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCC-----------------CcccHHHHHHHHHhhhc-
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL-----------------DSIDFDALVQNLQDLTE- 123 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p-----------------~s~D~~~l~~~L~~l~~- 123 (954)
|++||+||++||||||+++.|. .+|++|||+|...+.+...+.| +.+|++.+.+.++.-..
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 6899999999999999999997 6899999999987765443332 45677777766654322
Q ss_pred ---CCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002197 124 ---GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (954)
Q Consensus 124 ---g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~ 200 (954)
.+.+.+|.+........... -....+++|+|.+++|+..+.+++-.+|.|.||.+++++|.+.||..++.+++..
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~~--~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~R 157 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILKL--LLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAENR 157 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH--HhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHH
Confidence 23467777766655444332 2345689999999999999999999999999999999999999997777888889
Q ss_pred HHhhchhhhhccCCCcCcccEEEECCCC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~~~ 228 (954)
.+.++|..++ ...||+||+||..
T Consensus 158 l~sQmp~~~k-----~~~a~~Vi~Nng~ 180 (225)
T KOG3220|consen 158 LQSQMPLEKK-----CELADVVIDNNGS 180 (225)
T ss_pred HHhcCCHHHH-----HHhhheeecCCCC
Confidence 9999999999 8999999999954
No 62
>PLN02422 dephospho-CoA kinase
Probab=99.62 E-value=6.9e-16 Score=164.40 Aligned_cols=158 Identities=18% Similarity=0.111 Sum_probs=119.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC-----------------CCCCcccHHHHHHHHHhhhc-
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQDLTE- 123 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~-----------------~~p~s~D~~~l~~~L~~l~~- 123 (954)
|.+|||||++||||||+++.|++ +|+.++++|.+.+.+... ...+.+|...|.+.++.-..
T Consensus 1 M~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 45899999999999999999985 899999999986643221 12357888888877665322
Q ss_pred ---CCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002197 124 ---GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (954)
Q Consensus 124 ---g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~ 200 (954)
-+.+.||.............. .....++++|.+++++.++...||.+|+|++|.++++.|.+.|+..........
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~~~~--~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R 157 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEILKLW--LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNR 157 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH--hcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 234667766544432221111 122369999999999999999999999999999999999999986555566666
Q ss_pred HHhhchhhhhccCCCcCcccEEEECCC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
++.+++...+ .+.||+||+|+.
T Consensus 158 i~~Q~~~eek-----~~~AD~VI~N~g 179 (232)
T PLN02422 158 INAQMPLDWK-----RSKADIVIDNSG 179 (232)
T ss_pred HHHcCChhHH-----HhhCCEEEECCC
Confidence 7777777666 789999999993
No 63
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.61 E-value=1.4e-15 Score=159.43 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=117.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC-----------------CCCCcccHHHHHHHHHhhhc-
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQDLTE- 123 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~-----------------~~p~s~D~~~l~~~L~~l~~- 123 (954)
|++|||+|++||||||+++.|+. +|+.+|++|.+.+.+... ...+.+|...|.+.++.-..
T Consensus 1 m~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 56899999999999999999987 899999999865532211 12356788877776664322
Q ss_pred ---CCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002197 124 ---GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (954)
Q Consensus 124 ---g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~ 200 (954)
-+.+.||............. ......++++|.+++++.++...||.+|||++|.++++.|.+.|+..........
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~~~--~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r 157 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFNEA--RAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR 157 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHH--HhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 23466676654443332111 1123469999999999999999999999999999999999999975544566666
Q ss_pred HHhhchhhhhccCCCcCcccEEEECCC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
++.+++.+.+ ...||+||+|+.
T Consensus 158 i~~Q~~~~~k-----~~~ad~vI~N~g 179 (200)
T PRK14734 158 IAAQIPDDVR-----LKAADIVVDNNG 179 (200)
T ss_pred HHhcCCHHHH-----HHhCCEEEECcC
Confidence 7777777666 689999999984
No 64
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.59 E-value=1.6e-15 Score=158.56 Aligned_cols=156 Identities=23% Similarity=0.263 Sum_probs=115.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC------------C-C----CCcccHHHHHHHHHhhh--
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG------------N-D----LDSIDFDALVQNLQDLT-- 122 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~------------~-~----p~s~D~~~l~~~L~~l~-- 122 (954)
|++|||||++||||||+|+.|++ +|++||++|++.+.+... + . -+.+|...|++.++.-.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 68999999999999999999999 999999999987743221 1 1 12355555555443211
Q ss_pred --cCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002197 123 --EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (954)
Q Consensus 123 --~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~ 200 (954)
.-+.+.+|....... .. .......++++|.+++++......||.+|+|++|+++|+.|.++|+.......+..
T Consensus 81 ~~~Le~i~hPli~~~~~-~~----~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~ 155 (201)
T COG0237 81 RLKLEKILHPLIRAEIK-VV----IDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEAR 155 (201)
T ss_pred HHHHHHhhhHHHHHHHH-HH----HHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence 112344554444332 11 11122238999999999987777799999999999999999999996565677778
Q ss_pred HHhhchhhhhccCCCcCcccEEEECCCC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~~~ 228 (954)
+..+.+..++ ...||+|++|+..
T Consensus 156 ~~~Q~~~~ek-----~~~ad~vi~n~~~ 178 (201)
T COG0237 156 LASQRDLEEK-----LALADVVIDNDGS 178 (201)
T ss_pred HHhcCCHHHH-----HhhcCChhhcCCC
Confidence 8888888888 7999999999954
No 65
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.59 E-value=1.6e-15 Score=158.59 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=114.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC-----------------CCCcccHHHHHHHHHhhhc---
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDLTE--- 123 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~-----------------~p~s~D~~~l~~~L~~l~~--- 123 (954)
+|||+|++||||||+++.|++ +|+.++++|.+.+.+.+.+ ..+.+|...|.+.++.-..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999976 7999999999865432211 1256788888777664322
Q ss_pred -CCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002197 124 -GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (954)
Q Consensus 124 -g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~ 202 (954)
-+.+.||............ .....++|+|.+++++.++...||.+|||++|.++++.|.+.|+..........++
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~----~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~ 155 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQT----TAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIA 155 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHH----HhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2346677665544333221 11235899999999999999999999999999999999999998665555555555
Q ss_pred hhchhhhhccCCCcCcccEEEECCC
Q 002197 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 203 ~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
.+++...+ +..||+||+|+.
T Consensus 156 ~Q~~~~~k-----~~~aD~vI~N~~ 175 (196)
T PRK14732 156 SQLPITEK-----LKRADYIVRNDG 175 (196)
T ss_pred HcCCHHHH-----HHhCCEEEECCC
Confidence 56655544 799999999984
No 66
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.58 E-value=1.2e-14 Score=148.55 Aligned_cols=130 Identities=22% Similarity=0.371 Sum_probs=118.3
Q ss_pred hhhcccccccCCCCCCCCCcCCcc-eEEEEeeC--CEEEEEeeccccccCcccccceeEEe--hhhHHHHHHHhCceeee
Q 002197 727 AQNFIDMYLRLPGIPTNGQLTESD-CIRVRICE--GRFALLIREPLREGNFIIQPKVDFDI--SISTVAGLLNLGYQAVA 801 (954)
Q Consensus 727 v~~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~--~~~~l~~~~~~~d~~~~~~~~~~~~v--~~~~~~~l~~lg~~~~~ 801 (954)
.....|+||..| +++++..+ |||||..+ +++.+|||+|..++.+++|++.+++| ...|.++|.+|||+...
T Consensus 28 ~~~q~d~Yfd~p----~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~~E~e~~v~~~~~~~~iL~~lg~~~~~ 103 (169)
T cd07890 28 REFQEDIYFDHP----DRDLAATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVREEIETEVADPEAMKEILERLGFGPVG 103 (169)
T ss_pred ceeEeEEEEcCC----chhHHhCCCcEEEEEeCCCCcEEEEEECCCCCCCccceEEEEEecCCHHHHHHHHHHcCCceeE
Confidence 446779999988 66666654 99999988 99999999999999899999999999 78899999999999999
Q ss_pred eeeeeeEEeecCcEEEEEecccCCCCceEEEecc------cHHHHHHHHhhcCCCC-CccchhHHHH
Q 002197 802 YIEASAFIYQDGKILIEVDHLQDAPSPYLQIKGV------DKEAVAAAGSTLKLDG-SYTTKSYLQI 861 (954)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~v~~~~~~l~~~~-~~~~~syle~ 861 (954)
.+++.|.+|..+++.|++|++++|| +|+||-+. +++.+..++++||+.+ .-+++||+|+
T Consensus 104 ~~~K~R~~~~~~~~~v~lD~~~~lG-~f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 104 RVKKEREIYLLGQTRVHLDRVEGLG-DFVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred EEEEEEEEEEECCEEEEEEccCCCC-ceEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 9999999999999999999999999 79999776 9999999999999965 7889999974
No 67
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.58 E-value=5.5e-15 Score=155.96 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=112.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC-------------------CCCC--cccHHHHHHHH
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-------------------NDLD--SIDFDALVQNL 118 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~-------------------~~p~--s~D~~~l~~~L 118 (954)
+.+++|||||++||||||+++.|++ +|+.++++|...+.+... +..+ .+|...+.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 3468999999999999999999987 899999999865533211 0012 26766666555
Q ss_pred Hhhh----cCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc
Q 002197 119 QDLT----EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (954)
Q Consensus 119 ~~l~----~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r 194 (954)
+.-. .-+.+.||............. ......++++|++++++.++...||.+|+|++|.++++.|.+.|+....
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~--~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~ 159 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDRA--ARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMGSR 159 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHHH--HhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence 4321 123455665554433332211 1123468999999999998888999999999999999999999986544
Q ss_pred cCHHHHHHhhchhhhhccCCCcCcccEEEECCC
Q 002197 195 CSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 195 ~~~e~~~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
......++.+++.... .+.||++|+|+.
T Consensus 160 e~~~~Ri~~q~~~~~~-----~~~ad~vI~N~g 187 (208)
T PRK14731 160 EEIRRRIAAQWPQEKL-----IERADYVIYNNG 187 (208)
T ss_pred HHHHHHHHHcCChHHH-----HHhCCEEEECCC
Confidence 4555555656665555 467999999983
No 68
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.57 E-value=6.9e-15 Score=169.22 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=111.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC------------C-----CCCcccHHHHHHHHHhhhcC
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG------------N-----DLDSIDFDALVQNLQDLTEG 124 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~------------~-----~p~s~D~~~l~~~L~~l~~g 124 (954)
|++|||||++||||||+|+.|++ +|+++|++|.+.+.+... + ..+.+|...|.+.++.-...
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 46899999999999999999988 899999999976542211 1 23578888888777653322
Q ss_pred ----CccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002197 125 ----KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (954)
Q Consensus 125 ----~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~ 200 (954)
+.+.+|..-........ ..+...++++|.+++++.++...||.+|||++|.+.++.|...|+..........
T Consensus 80 ~~~le~i~hP~I~~~i~~~i~----~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~r 155 (395)
T PRK03333 80 RAVLNGIVHPLVGARRAELIA----AAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARAR 155 (395)
T ss_pred HHHHHHhhhHHHHHHHHHHHH----hcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence 23455544433322211 1233457788889999999999999999999999999999988655443334444
Q ss_pred HHhhchhhhhccCCCcCcccEEEECCCC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~~~ 228 (954)
+..+++...+ ...||+||+|+..
T Consensus 156 i~~Q~~~e~k-----~~~AD~vIdN~~s 178 (395)
T PRK03333 156 IAAQASDEQR-----RAVADVWLDNSGT 178 (395)
T ss_pred HHhcCChHHH-----HHhCCEEEECCCC
Confidence 5555554444 7899999998854
No 69
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.54 E-value=2.3e-14 Score=147.86 Aligned_cols=138 Identities=22% Similarity=0.308 Sum_probs=109.8
Q ss_pred ccccccccccccceeccccCCCCcccccccCCceeEeee-CCeEEEEEcceeccCCC----ccccceeEEEeeh----hH
Q 002197 250 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS-GIRYYLSIGDQRIVDKN----FIIRPKAEFEVGR----MT 320 (954)
Q Consensus 250 ~~~~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~-~~~~~ltyKgp~i~~~~----~~~k~r~E~ev~v----~~ 320 (954)
++.+.....+.|.||+.|.+++...+.++ |||.. +++..+|||+|..++.. +.+ .|.|+|..+ .+
T Consensus 26 ~~~~~~~~~~~d~Y~dt~~~~L~~~~~~l-----RiR~~~~~~~~lTlK~~~~~~~~~e~~~~~-~r~e~e~~i~~~~~~ 99 (185)
T PF01928_consen 26 GAEFPKEEHQTDTYFDTPDRDLRKAGIAL-----RIRRENGDGWYLTLKGPGSDGPREEIEFEV-SREEYEAPISDAEEM 99 (185)
T ss_dssp TEEEEEEEEEEEEEEEETTTHHHHTTSEE-----EEEEETTTEEEEEEEEESSSSSEEEEEEEE-SHHCCEEEHSHHHHH
T ss_pred ccccCeEEEEEEEEEeCCChhHHhCCcEE-----EEEeecCCccEEEEEccCccCcccccceee-cchhhhccccchHHH
Confidence 34566778899999999999888777666 99976 77777999998865530 101 144444443 68
Q ss_pred HHHHHhcCCceeEEEEEEEEEEEeCCEEEEEecCCCC-CCCeEEEEec--ChhH-------HHHHHHHcCCCCCc-cchh
Q 002197 321 LGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL-DETFMVLRGT--NRKT-------VGAEALRMGINGPW-ITKS 389 (954)
Q Consensus 321 ~~~L~~LGf~~~~~v~K~R~~~~~~~~~i~lD~v~~l-G~~FvEiE~~--~~~~-------v~~~a~~Lgl~~~~-~~~s 389 (954)
..+|..+||.+.+.++|.|+.|.+++++|+||+++++ |. |+|||.. +.+. +.+++..||+.... ++++
T Consensus 100 ~~~l~~l~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~-~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~ 178 (185)
T PF01928_consen 100 REILEALGLRPVARIEKKRRSYRLEGVEVELDEVDGLPGT-FLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERS 178 (185)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTTEE-EEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSH
T ss_pred HHHHHHhcCceeEEEEEEEEEEEECCEEEEEEEEecceEE-EEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHH
Confidence 9999999999999999999999999999999999999 88 9999998 3333 44555669998755 9999
Q ss_pred HHHHH
Q 002197 390 YLEMV 394 (954)
Q Consensus 390 Ylel~ 394 (954)
|++|+
T Consensus 179 y~~l~ 183 (185)
T PF01928_consen 179 YLELL 183 (185)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 99986
No 70
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.53 E-value=4.4e-14 Score=147.63 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=103.8
Q ss_pred ccccccccccceeccccCCCCcccccccCCceeEeeeCCeEEEEEcceec---cCCCccccceeEEEeeh----h-----
Q 002197 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRI---VDKNFIIRPKAEFEVGR----M----- 319 (954)
Q Consensus 252 ~~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~~~~ltyKgp~i---~~~~~~~k~r~E~ev~v----~----- 319 (954)
.......++|.||+.|+++++.++++| |+|+. ..+|+||++.. +... +.++|+++.+ .
T Consensus 25 ~~~~~~~~~d~YfDtp~~~l~~~~~~L-----RiR~~--~~~lk~~~~~~~~~~~~~---~~~~E~~~~~~~~~~v~~~~ 94 (196)
T cd07758 25 ELLGRRTFHDTYYDTPDNTLSLNDVWL-----RQRNG--QWELKIPPGGDPPTAGAN---TRYEELTGEAAIAAALRKLL 94 (196)
T ss_pred CCCceEEEeeEEEeCCChhHHhCCcEE-----EEECC--eEEEEecCCCCCCCCCCc---ceEEecccHHHHHHHHHHhc
Confidence 556778899999999999999999988 99963 67788886654 2334 8999998888 1
Q ss_pred ---------HHHHHHhcCCceeEEEEEEEEEEEeC-CEEEEEecCCCCCCCeEEEEec--C---h-------hHHHHHHH
Q 002197 320 ---------TLGGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N---R-------KTVGAEAL 377 (954)
Q Consensus 320 ---------~~~~L~~LGf~~~~~v~K~R~~~~~~-~~~i~lD~v~~lG~~FvEiE~~--~---~-------~~v~~~a~ 377 (954)
+..+|..|||.+.++++|.|+.|.++ +++||||+++ +|..|+|||.+ + + +.+.++|+
T Consensus 95 ~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~i~~~~~ 173 (196)
T cd07758 95 GGALPSAGGLGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAKIDELIS 173 (196)
T ss_pred CCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHHHHHHHH
Confidence 34799999999999999999999999 9999999999 77669999986 4 2 66899999
Q ss_pred HcCCCCCc
Q 002197 378 RMGINGPW 385 (954)
Q Consensus 378 ~Lgl~~~~ 385 (954)
+||+...+
T Consensus 174 ~lg~~~~~ 181 (196)
T cd07758 174 ALMERYLW 181 (196)
T ss_pred HhCCCccc
Confidence 99998743
No 71
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.53 E-value=4.5e-14 Score=145.64 Aligned_cols=119 Identities=14% Similarity=-0.008 Sum_probs=105.5
Q ss_pred cccccccceeccccCCCCcccccccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEeeh----------------
Q 002197 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---------------- 318 (954)
Q Consensus 255 ~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v---------------- 318 (954)
....|++.||+.|+++++.++.|+ |||..++++.+|||||.. +.|.|+|+.+
T Consensus 25 ~~~~q~n~Yfdtp~~~l~~~~~aL-----RiR~~~~~~~~TlK~~~~-------~~r~E~e~~l~~~~~~~~~~~~~~~~ 92 (180)
T cd07762 25 DFFKQTNYYFDTPDFALKKKHSAL-----RIREKEGKAELTLKVPQE-------VGLLETNQPLTLEEAEKLIKGGTLPE 92 (180)
T ss_pred CcEEEEEEEEeCCCHHHHhCCcEE-----EEEeeCCeEEEEEeeCCC-------CCCcEEeecCCHHHHHHHhccccCCc
Confidence 346789999999999999999999 999999999999998873 5799999988
Q ss_pred -hHHHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEec--C----hhHHHHHHHHcCCCCCc
Q 002197 319 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--N----RKTVGAEALRMGINGPW 385 (954)
Q Consensus 319 -~~~~~L~~LGf~~-----~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~--~----~~~v~~~a~~Lgl~~~~ 385 (954)
.+..+|.+|||.+ ++.++|.|..|.+++.++|||++.++|.+++|||.. + .+.+.++++.||+....
T Consensus 93 ~~~~~~L~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~ 171 (180)
T cd07762 93 GEILDKLKELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRP 171 (180)
T ss_pred hHHHHHHHHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence 3778999999986 999999999999999999999999999933999976 3 26789999999998754
No 72
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.52 E-value=2e-14 Score=149.08 Aligned_cols=155 Identities=23% Similarity=0.233 Sum_probs=113.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC-----------------CCCcccHHHHHHHHHhhhc---
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDLTE--- 123 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~-----------------~p~s~D~~~l~~~L~~l~~--- 123 (954)
+|||+|++||||||+|+.|++..|+.++++|.+.+.+...+ ..+..|...+...++.-..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999999876699999999865432211 1346777777766654221
Q ss_pred -CCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002197 124 -GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (954)
Q Consensus 124 -g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~ 202 (954)
-+.+.+|.+............ ....++|++.+++++..+...||.+|+|++|.++++.|.+.|+..........++
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~---~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~ 157 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQ---SKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLA 157 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhh---cCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 234566666555544332211 1225899999999998888999999999999999999999999655455555666
Q ss_pred hhchhhhhccCCCcCcccEEEECC
Q 002197 203 SIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 203 ~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
.+.+.+.+ +..||+||+|+
T Consensus 158 ~q~~~~~~-----~~~ad~vI~N~ 176 (188)
T TIGR00152 158 SQMDIEER-----LARADDVIDNS 176 (188)
T ss_pred hcCCHHHH-----HHhCCEEEECC
Confidence 66665554 78999999998
No 73
>PRK08233 hypothetical protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=141.11 Aligned_cols=150 Identities=18% Similarity=0.270 Sum_probs=109.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-Cceeccccccchhh---hccc--cCCCCCcccHHHHHHHHHHHHcCCceecc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKSEQ---VKDF--KYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg-~~vIs~Ddfy~~~~---~~~~--n~d~p~t~D~~lL~~~L~~L~~g~~v~~P 589 (954)
++++|+|+|++||||||+|+.|+..++ +.++++|+|+.+.. .... .......++++.+.+.+..+.++.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 76 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS----- 76 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC-----
Confidence 368999999999999999999999996 77889999986421 1100 011224566777777666654321
Q ss_pred cccccccccCCccceeeccCccEEEEEeeccc-chhhhhcCCeEEEEEcChhHHHHHHHhcCcccccc-ccc--hhhHHh
Q 002197 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-FMS--QNDIMM 665 (954)
Q Consensus 590 ~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~-~~~--~~q~~~ 665 (954)
+.++||+||.+.. ++.+.+.+|..||+++|.+.++.|++.|+...... ... ...|..
T Consensus 77 -------------------~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 137 (182)
T PRK08233 77 -------------------NVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN 137 (182)
T ss_pred -------------------CceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 1378899998775 47888899999999999999999999987543211 111 245666
Q ss_pred hhcchhhhhcccccCcccEEEcCC
Q 002197 666 TVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 666 ~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
.++|.|.+++++....|+++|++.
T Consensus 138 ~~~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 138 YARPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHHHhhcCccCCeEEEcCC
Confidence 788999998888777899998764
No 74
>PRK08233 hypothetical protein; Provisional
Probab=99.49 E-value=2.8e-13 Score=138.72 Aligned_cols=142 Identities=18% Similarity=0.356 Sum_probs=102.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC-CeEEecccccccccc---------CCCCCcccHHHHHHHHHhhhcCCcccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG-CTLISMENYRVGVDE---------GNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg-~~VIs~Dd~y~~~~~---------~~~p~s~D~~~l~~~L~~l~~g~~i~~p~ 131 (954)
.++|+|+|++||||||+|+.|++.++ +.+++.|.|+..... +...+.++.+.+.+.+..+..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 75 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------- 75 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence 58999999999999999999999996 778899988653211 1112234444444444433222
Q ss_pred chhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc--cC----HHHHHHhh
Q 002197 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CS----LDSLIDSI 204 (954)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r--~~----~e~~~~~v 204 (954)
...++||+||++... +.+...+|++|||++|.++++.|++.|+.... .. ...+....
T Consensus 76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 112588999997755 67888999999999999999999998875321 12 33344556
Q ss_pred chhhhhccCCCcCcccEEEECC
Q 002197 205 FPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 205 ~p~~~~~Iep~~~~ADiII~N~ 226 (954)
.|.|.+++++....|+++|+++
T Consensus 140 ~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHhhcCccCCeEEEcCC
Confidence 7888888877777899999876
No 75
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.48 E-value=4.9e-14 Score=143.38 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=114.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-CCceeccccccchhhhc------cccCCCCCcccHHHHHHHHHHHHcCCc-ee
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVK------DFKYDDFSSLDLSLLSKNISDIRNGRR-TK 587 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L-g~~vIs~Ddfy~~~~~~------~~n~d~p~t~D~~lL~~~L~~L~~g~~-v~ 587 (954)
+.+||||+|.+.|||||||+.|+..+ |+.+||.||||++.... -.+|+.++++|++++.+.+.....+.. ..
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 46899999999999999999999998 58999999999995421 236889999999999998877665522 11
Q ss_pred ccc---ccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccchhhH
Q 002197 588 VPI---FDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDI 663 (954)
Q Consensus 588 ~P~---yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~ 663 (954)
.+. .+...-+.....-........++|+||.+++. +.+.+.+|..|++..|.+.+..||-.|- ++.....-|
T Consensus 83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt----~y~p~~tgy 158 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREART----YYPPDDTGY 158 (225)
T ss_pred hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccc----cCCCCCCcc
Confidence 111 01100000000001122346899999999986 8889999999999999999998887663 443333334
Q ss_pred Hh-hhcchhhhhcccccCc
Q 002197 664 MM-TVFPMFQQHIEPHLVH 681 (954)
Q Consensus 664 ~~-~v~p~~~~~Iep~~~~ 681 (954)
.. .++|.|.++.+.....
T Consensus 159 fd~~~~P~Y~~~~~~~~d~ 177 (225)
T KOG3308|consen 159 FDPVVWPHYEKNFEEARDR 177 (225)
T ss_pred ccCccchHHHHHHHHHHhh
Confidence 44 4889999887654433
No 76
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.47 E-value=2.9e-13 Score=152.91 Aligned_cols=172 Identities=19% Similarity=0.256 Sum_probs=122.9
Q ss_pred hhhhHHHHHHH----HHHHHhc-----CCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccccc-----
Q 002197 41 FDHGYYLLVKS----IQELREK-----KGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD----- 101 (954)
Q Consensus 41 ~d~~~~~lv~~----i~~~~~~-----~~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~~~----- 101 (954)
+.+-|.+|... |..+... ..+|++|||+|++||||||+++.|...+. +.+|+.|+||....
T Consensus 182 ~~~~ylPl~~w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL 261 (460)
T PLN03046 182 IYHYYIPVFIWCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAEL 261 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHH
Confidence 45566677775 5544432 22689999999999999999999988773 67899999987321
Q ss_pred -----------cCCCCCcccHHHHHHHHHhh----hcCCccccccchhhhhc----ccccc--ccccCCCcEEEEEeccc
Q 002197 102 -----------EGNDLDSIDFDALVQNLQDL----TEGKDTLIPMFDYQQKN----RIGSK--VIKGASSGVVIVDGTYA 160 (954)
Q Consensus 102 -----------~~~~p~s~D~~~l~~~L~~l----~~g~~i~~p~~d~~~~~----~~~~~--~~~~~~~~vVIvEG~~l 160 (954)
.++.|+++|.....+.|..+ +.|..+..|.||+..+. |.... .....+.+|||+||+++
T Consensus 262 ~~~nP~n~LL~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~v 341 (460)
T PLN03046 262 RERNPGNALLELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWML 341 (460)
T ss_pred HhhCccchhhcccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHh
Confidence 12457899999888888777 56888999999999865 43321 22346779999999887
Q ss_pred chh--------------------------hhhcCCCEEEEEEcC-HHHHHHHHHHhccCC------c---cCHHHHHHhh
Q 002197 161 LDA--------------------------RLRSLLDIRVAVVGG-VHFSLISKVQYDIGD------S---CSLDSLIDSI 204 (954)
Q Consensus 161 l~~--------------------------~l~~~~D~~I~Vda~-~~~rl~Rri~RD~~~------r---~~~e~~~~~v 204 (954)
+.. .+...+|.-|++.++ .+.-..||.+++... . ..+.++++.+
T Consensus 342 G~~P~~~~~l~~~D~~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~Y 421 (460)
T PLN03046 342 GFKPLPNEVVKAVDPQLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRY 421 (460)
T ss_pred CCCCCChHHhhccChhHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 651 111246676777776 466677776655422 1 3467788889
Q ss_pred chhhhhcc
Q 002197 205 FPLFRKHI 212 (954)
Q Consensus 205 ~p~~~~~I 212 (954)
+|.|+.|.
T Consensus 422 mPaY~~y~ 429 (460)
T PLN03046 422 LPAYKAYL 429 (460)
T ss_pred hhHHHHHH
Confidence 99999876
No 77
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.47 E-value=1.4e-13 Score=141.97 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=135.3
Q ss_pred cccccCCccc-chhhhHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC-------------CeEEeccc
Q 002197 30 SILQSLPVHA-SFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------------CTLISMEN 95 (954)
Q Consensus 30 ~~~~~~~~~~-s~d~~~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg-------------~~VIs~Dd 95 (954)
+..|.+.... +.|+.|...++++. .+....+|++|++|+||||++..+.+... +.|+.||+
T Consensus 91 ~~~qv~~~D~s~~de~y~~~~e~L~-----~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDG 165 (323)
T KOG2702|consen 91 IENQVLFKDHSEDDEFYPVKYEALT-----SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDG 165 (323)
T ss_pred HHhcccccCcchhhhhhHHHHHHhc-----ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccc
Confidence 3444443333 36667777777665 55668999999999999999999987543 34699999
Q ss_pred cccc-------------cccCCCCCcccHHHHHHHHHhhh--cCCccccccchhhhhccccccccccCCCcEEEEEeccc
Q 002197 96 YRVG-------------VDEGNDLDSIDFDALVQNLQDLT--EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYA 160 (954)
Q Consensus 96 ~y~~-------------~~~~~~p~s~D~~~l~~~L~~l~--~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l 160 (954)
|+.. ...+|.|.+||-+.+.+.+..++ ...+++.|.|+|..++++...+......+++|+||.|+
T Consensus 166 FHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYl 245 (323)
T KOG2702|consen 166 FHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYL 245 (323)
T ss_pred hhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEE
Confidence 8652 23467889999999998887776 45679999999999999999888888999999999999
Q ss_pred ch-----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc--cCHHHHHHh
Q 002197 161 LD-----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDS 203 (954)
Q Consensus 161 l~-----~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r--~~~e~~~~~ 203 (954)
+. ..+.+.+|.++|++++-+...+|...|....+ .++++..++
T Consensus 246 Ll~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~RHl~sGl~~t~~ea~er 295 (323)
T KOG2702|consen 246 LLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKRHLQSGLVTTIAEARER 295 (323)
T ss_pred EecCccHHHHHHHhhhheeccccHHHHHHHHHHHhhcccccCCHHHHHhh
Confidence 86 46778899999999999999999999998887 455555443
No 78
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.42 E-value=2.4e-13 Score=140.06 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=111.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh---------cc-c---cCCCCCcccHHHHHHHHHH----HH
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------KD-F---KYDDFSSLDLSLLSKNISD----IR 581 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~---------~~-~---n~d~p~t~D~~lL~~~L~~----L~ 581 (954)
+|||+|++||||||+++.|++ +|+.++++|++.+..-. .. + .+...+.+|...|.+.+.. ++
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999999 89999999999876210 11 1 1123477888888876533 34
Q ss_pred cCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch-
Q 002197 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (954)
Q Consensus 582 ~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~- 660 (954)
.-+.+.+|.+......... ......++|+|+.+++...+.+.+|..|+|++|.+.++.|.+.||.. +.+.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~-----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~----s~~~~ 150 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLA-----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGL----SEEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCC----CHHHH
Confidence 4456778876655433221 01123699999999999888899999999999999999999999842 2222
Q ss_pred hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 661 ~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
.+.+....+. ++....||++|.|+.+
T Consensus 151 ~~r~~~Q~~~-----~~~~~~aD~vI~N~~~ 176 (179)
T cd02022 151 EARIASQMPL-----EEKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHhcCCH-----HHHHHhCCEEEECcCC
Confidence 1222222322 1345679999999754
No 79
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.42 E-value=3.6e-13 Score=137.14 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=117.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEeccccccc----------cccCCCCCcccHHHHHHHHHhhhcCCccc-
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKDTL- 128 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs~Dd~y~~----------~~~~~~p~s~D~~~l~~~L~~l~~g~~i~- 128 (954)
+.+||||+|.++|||||||+.|+..| |+.+||.|+||++ ..+++.+++.|++++.+.+.....++...
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 45899999999999999999999988 5899999999984 23456678999999998887766654311
Q ss_pred --------cccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHH
Q 002197 129 --------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (954)
Q Consensus 129 --------~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~ 199 (954)
...+++..... ........++|+||.+++. +.+...+|..|++..+.+++.+||-.|..-...+.-.
T Consensus 83 ~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~p~~tgy 158 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYPPDDTGY 158 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCCCCCCcc
Confidence 11111111111 1222345799999999998 7888999999999999999998888776433222212
Q ss_pred HHHhhchhhhhccCCCcCcc--cEEEECCCCCc
Q 002197 200 LIDSIFPLFRKHIEPDLHHA--QIRINNRFVSS 230 (954)
Q Consensus 200 ~~~~v~p~~~~~Iep~~~~A--DiII~N~~~~~ 230 (954)
+.-.++|.|.++.+..+.++ |....|...++
T Consensus 159 fd~~~~P~Y~~~~~~~~d~~~h~~~flngdvs~ 191 (225)
T KOG3308|consen 159 FDPVVWPHYEKNFEEARDRSRHDSLFLNGDVSE 191 (225)
T ss_pred ccCccchHHHHHHHHHHhhcccceeeecccchh
Confidence 22346888888886655544 66666664443
No 80
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.41 E-value=1.6e-13 Score=141.41 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=106.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchh----h-----h----ccccCCCCCcccHHHHHHHH----HHH
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V----KDFKYDDFSSLDLSLLSKNI----SDI 580 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~----~-----~----~~~n~d~p~t~D~~lL~~~L----~~L 580 (954)
++|||+|+.||||||+++.|++ +|+.++++|.+.+.- . . +..-++..+++|...|.+.+ ..+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999998 999999999887651 1 0 11123345788988888765 223
Q ss_pred HcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch
Q 002197 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (954)
Q Consensus 581 ~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~ 660 (954)
+.-+.+.+|........+.. .....+++++|.++++...+...||..|+|.+|.++++.|.+.|| |.+.+.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~-----~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~ 150 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIK-----RNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH-----hccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHH
Confidence 34445667765544433221 111227999999999999999999999999999999999999997 433333
Q ss_pred -hhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 661 -~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
.+......|..++- ..||+||+|+.
T Consensus 151 ~~~ri~~Q~~~~~k~-----~~ad~vI~N~g 176 (180)
T PF01121_consen 151 AEARIASQMPDEEKR-----KRADFVIDNNG 176 (180)
T ss_dssp HHHHHHTS--HHHHH-----HH-SEEEE-SS
T ss_pred HHHHHHhCCCHHHHH-----HhCCEEEECCC
Confidence 34455555555543 67999999974
No 81
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.38 E-value=7.7e-13 Score=138.32 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=108.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh-----h--------ccccCCCCC-cccHHHHHHHHH----H
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-----V--------KDFKYDDFS-SLDLSLLSKNIS----D 579 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~-----~--------~~~n~d~p~-t~D~~lL~~~L~----~ 579 (954)
.+|||+|++||||||+|+.|++.+|+.++++|++.+.-- . +..-....+ ++|...|.+.+. .
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999988999999999977511 0 011123346 788877777542 1
Q ss_pred HHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccc
Q 002197 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (954)
Q Consensus 580 L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~ 659 (954)
++.-+.+.+|..-.....+. .......++++|-.+++...+...+|..|+|++|.++++.|.+.|+ |.+.+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~-----~~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e 152 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEEL-----AQLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEE 152 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHH-----HhcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 22223355564333222111 1111246999999999998899999999999999999999999997 33322
Q ss_pred h-hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 660 ~-~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
. .+......| +++.+..||++|+|+.+
T Consensus 153 ~~~~ri~~Q~~-----~~~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 153 EAEARINAQWP-----LEEKVKLADVVLDNSGD 180 (195)
T ss_pred HHHHHHHhCCC-----HHHHHhhCCEEEECCCC
Confidence 2 222332333 23445789999998853
No 82
>PLN02796 D-glycerate 3-kinase
Probab=99.38 E-value=2.1e-12 Score=144.09 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=112.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccccc----------------cCCCCCcccHHHHHHHH
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD----------------EGNDLDSIDFDALVQNL 118 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~~~----------------~~~~p~s~D~~~l~~~L 118 (954)
.+|++|||+|++||||||+++.|+..+. +..|++|+||.... .++.|.++|.+.+.+.|
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L 177 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETL 177 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHH
Confidence 4689999999999999999999998884 56799999986321 13457899999999999
Q ss_pred Hhhh----cCCccccccchhhhhcccccc------ccccCCCcEEEEEecccchh-------------------------
Q 002197 119 QDLT----EGKDTLIPMFDYQQKNRIGSK------VIKGASSGVVIVDGTYALDA------------------------- 163 (954)
Q Consensus 119 ~~l~----~g~~i~~p~~d~~~~~~~~~~------~~~~~~~~vVIvEG~~ll~~------------------------- 163 (954)
..++ .+..+..|.||+..+...+.+ .....+.+|||+||+++...
T Consensus 178 ~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~L~~y~ 257 (347)
T PLN02796 178 EALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKNLEAYY 257 (347)
T ss_pred HHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence 8887 577899999999986633222 23336779999999998651
Q ss_pred -hhhcCCCEEEEEEcC-HHHHHHHHHHhcc------CCc---cCHHHHHHhhchhhhhcc
Q 002197 164 -RLRSLLDIRVAVVGG-VHFSLISKVQYDI------GDS---CSLDSLIDSIFPLFRKHI 212 (954)
Q Consensus 164 -~l~~~~D~~I~Vda~-~~~rl~Rri~RD~------~~r---~~~e~~~~~v~p~~~~~I 212 (954)
.+...+|.-|.+.++ .+.-..||.+.+. ... ..+.+++++++|.|+.|.
T Consensus 258 ~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~~mP~y~~y~ 317 (347)
T PLN02796 258 DAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSRYMPAYKAYL 317 (347)
T ss_pred HHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 122356788888876 4445555543332 111 456778888999998875
No 83
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.36 E-value=1.6e-12 Score=136.41 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=112.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh---------cccc---CCCCCcccHHHHHHHHH---
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------KDFK---YDDFSSLDLSLLSKNIS--- 578 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~---------~~~n---~d~p~t~D~~lL~~~L~--- 578 (954)
...|++|||+|++||||||+++.|++.+|+.+++.|.+.+.--. ..++ ++ .+.+|...|.+.+.
T Consensus 3 ~~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~ 81 (204)
T PRK14733 3 FINTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESK 81 (204)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCH
Confidence 35689999999999999999999999899999999988765210 0111 12 36788888887652
Q ss_pred -HHHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhh--hhcCCeEEEEEcChhHHHHHHHhcCccccc
Q 002197 579 -DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEI--RKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (954)
Q Consensus 579 -~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l--~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg 655 (954)
.++.-+.+.+|........+.. ..+..++++|.++++...+ ...+|..|+|.+|.+.++.|.+.||...+.
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~~------~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~ 155 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQVK------ESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQ 155 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH------hcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHH
Confidence 2333345677776554432221 1133689999999987654 568999999999999999999999743221
Q ss_pred cccchhhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 656 CFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 656 ~~~~~~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
. ..+......|..++ +..||+||+|+-
T Consensus 156 ~---a~~ri~~Q~~~eek-----~~~aD~VI~N~g 182 (204)
T PRK14733 156 Q---AVAFINLQISDKER-----EKIADFVIDNTE 182 (204)
T ss_pred H---HHHHHHhCCCHHHH-----HHhCCEEEECcC
Confidence 1 12334444544433 467999999986
No 84
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.34 E-value=2e-12 Score=135.03 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=108.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh-------------ccccCCCCCcccHHHHHHHHH----H
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNIS----D 579 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~-------------~~~n~d~p~t~D~~lL~~~L~----~ 579 (954)
+.+|||+|++||||||+++.|++ +|+.++++|.+.+..-. +...+...+.+|...|.+.+. .
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46899999999999999999998 99999999999875210 111123347788887777653 2
Q ss_pred HHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccc
Q 002197 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (954)
Q Consensus 580 L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~ 659 (954)
+..-+.+.+|..-....... .......++++|+.+++...+.+.+|..|+|++|.+.++.|...|+. .+.+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~-----~~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~----~s~e 151 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQL-----QEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDG----LSEE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCC----CCHH
Confidence 33334455665443332221 01112369999999999988999999999999999999999998863 2222
Q ss_pred h-hhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 660 ~-~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
. .+......+.. .....||++|+|+.
T Consensus 152 ~~~~ri~~Q~~~~-----~~~~~ad~vI~N~g 178 (194)
T PRK00081 152 EAEAIIASQMPRE-----EKLARADDVIDNNG 178 (194)
T ss_pred HHHHHHHHhCCHH-----HHHHhCCEEEECCC
Confidence 1 22333333322 22457999999874
No 85
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.32 E-value=3.3e-12 Score=132.03 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=113.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh-------C------Cceeccccccchhhh---------ccccCCCCCcccHH
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV-------G------CEVVSLESYFKSEQV---------KDFKYDDFSSLDLS 571 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~L-------g------~~vIs~Ddfy~~~~~---------~~~n~d~p~t~D~~ 571 (954)
.+....+|++|++|+||||++..+.+.. + +.++.||.|+...+. +....+.|-|||-+
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~ 195 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN 195 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence 4456789999999999999999998743 2 346899999876321 12235779999999
Q ss_pred HHHHHHHHHH--cCCceecccccccccccCCccceeeccCccEEEEEeecccc-----hhhhhcCCeEEEEEcChhHHHH
Q 002197 572 LLSKNISDIR--NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLI 644 (954)
Q Consensus 572 lL~~~L~~L~--~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~ 644 (954)
++.+.+..|+ .-..+.+|.||+..||..+ ..+.+.....|||+||.|++. ..+.+.+|.++|++.+.+...+
T Consensus 196 lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~-DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~ 274 (323)
T KOG2702|consen 196 LFLQLCKILKKTTIPDIYVPSFDHALGDPVP-DDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE 274 (323)
T ss_pred HHHHHHHHHhhcCCCceeccccccccCCCCc-cceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH
Confidence 9999999998 4567999999999999886 355666678999999999975 4567789999999999999999
Q ss_pred HHHhcCccc
Q 002197 645 SRVQRDKSR 653 (954)
Q Consensus 645 Rri~RD~~~ 653 (954)
|...|....
T Consensus 275 RVa~RHl~s 283 (323)
T KOG2702|consen 275 RVAKRHLQS 283 (323)
T ss_pred HHHHHhhcc
Confidence 999988665
No 86
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.30 E-value=4.6e-12 Score=132.99 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=109.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh---------h----ccccCCCCCcccHHHHHHHHH----HH
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~---------~----~~~n~d~p~t~D~~lL~~~L~----~L 580 (954)
++|||+|++||||||+++.|++ +|+.+++.|+..+..- . +....+..+++|...|.+.+- .+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5899999999999999999987 8999999998765410 0 111233458888888877552 22
Q ss_pred HcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch
Q 002197 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (954)
Q Consensus 581 ~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~ 660 (954)
+.-+.+.+|........+.. . ....+..++++|..+++...+.+.+|.+|||++|.+.++.|.+.|+ |.+.+.
T Consensus 81 ~~le~i~hP~v~~~~~~~~~--~-~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s~e~ 153 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFN--E-ARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----GLDEDD 153 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHH--H-HHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 33345666665333221110 0 0012347899999999988888899999999999999999999885 433332
Q ss_pred -hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 661 -~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
........+.+.+ ...||++|+|+.+
T Consensus 154 ~~~ri~~Q~~~~~k-----~~~ad~vI~N~g~ 180 (200)
T PRK14734 154 ARRRIAAQIPDDVR-----LKAADIVVDNNGT 180 (200)
T ss_pred HHHHHHhcCCHHHH-----HHhCCEEEECcCC
Confidence 2344444444433 3679999999865
No 87
>PLN02422 dephospho-CoA kinase
Probab=99.28 E-value=6.6e-12 Score=134.09 Aligned_cols=161 Identities=18% Similarity=0.138 Sum_probs=111.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh---------h----ccccCCCCCcccHHHHHHHHH----HH
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~---------~----~~~n~d~p~t~D~~lL~~~L~----~L 580 (954)
.+|||+|++||||||+++.|+ .+|+.++++|+..+.-- . +..-++..+++|...|.+.+. .+
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 479999999999999999998 48999999999977611 0 111234468899988887652 23
Q ss_pred HcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch
Q 002197 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (954)
Q Consensus 581 ~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~ 660 (954)
+.-+.+.+|..-.....+.. ... ..+.+++++|.++++...+.+.+|..|+|++|.+.+..|.+.|+ |.+.+.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~--~~~-~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~s~ee 153 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEIL--KLW-LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARD----GLSEEQ 153 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHH--HHH-hcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 33445667765433321110 000 12246999999999998888999999999999999999999997 333332
Q ss_pred -hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 661 -~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
.+......|...+ ...||++|+|+.+
T Consensus 154 a~~Ri~~Q~~~eek-----~~~AD~VI~N~gs 180 (232)
T PLN02422 154 ARNRINAQMPLDWK-----RSKADIVIDNSGS 180 (232)
T ss_pred HHHHHHHcCChhHH-----HhhCCEEEECCCC
Confidence 2334444444332 4679999999864
No 88
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=3.6e-12 Score=148.75 Aligned_cols=168 Identities=26% Similarity=0.439 Sum_probs=144.7
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC----------CeEEecccccccc------------ccCCCCCcccHHHHHH
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMENYRVGV------------DEGNDLDSIDFDALVQ 116 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg----------~~VIs~Dd~y~~~------------~~~~~p~s~D~~~l~~ 116 (954)
...+++||+.|+++|||||++..+.+.++ +..++.|.||+.+ ...+.|+++|.+.+..
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~ 120 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYL 120 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHH
Confidence 34689999999999999999999988887 3456777788842 2346789999999999
Q ss_pred HHHhhhcCCccccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-
Q 002197 117 NLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS- 194 (954)
Q Consensus 117 ~L~~l~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r- 194 (954)
.+.+++.+..+..|.|++.++.+.+.......+.+++++||++.++ ...+++.+.++|+|.+.+.++.|++.|+...+
T Consensus 121 ~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g 200 (473)
T KOG4203|consen 121 TLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVERG 200 (473)
T ss_pred HHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhhc
Confidence 9999999999999999999999987766666777899999999998 68889999999999999999999999999876
Q ss_pred cCHHHHHH----hhchhhhhccCCCcCcccEEEECC
Q 002197 195 CSLDSLID----SIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 195 ~~~e~~~~----~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
.+++.+.. +..|.+..||+|+++.||++|+..
T Consensus 201 ~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~ 236 (473)
T KOG4203|consen 201 RDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG 236 (473)
T ss_pred ccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc
Confidence 55555544 468999999999999999999765
No 89
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.28 E-value=6.1e-12 Score=124.52 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=104.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~ 142 (954)
++|.|+|++||||||+|+.||+.+|.+++++..+|+.++..-..+-.++..+.+ ..|.+|..++.+...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE-----------~~p~iD~~iD~rq~e 69 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAE-----------EDPEIDKEIDRRQKE 69 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHh-----------cCchhhHHHHHHHHH
Confidence 379999999999999999999999999999999999876554444333333322 456677766665433
Q ss_pred cccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCH-HHHHHh---hchhhhhcc--CC-C
Q 002197 143 KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSL-DSLIDS---IFPLFRKHI--EP-D 215 (954)
Q Consensus 143 ~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~-e~~~~~---v~p~~~~~I--ep-~ 215 (954)
... .+-+|+||-++.+-. ....|++||+.+|..+|..|...|+...-... .....+ -...|.++. .. +
T Consensus 70 ~a~----~~nvVlegrLA~Wi~-k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidD 144 (179)
T COG1102 70 LAK----EGNVVLEGRLAGWIV-REYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDD 144 (179)
T ss_pred HHH----cCCeEEhhhhHHHHh-ccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 221 346899999997722 26899999999999999999999996553211 111111 123333332 11 2
Q ss_pred cCcccEEEECCCCC
Q 002197 216 LHHAQIRINNRFVS 229 (954)
Q Consensus 216 ~~~ADiII~N~~~~ 229 (954)
..-.|+||+.+.-+
T Consensus 145 lSiyDLVinTs~~~ 158 (179)
T COG1102 145 LSIYDLVINTSKWD 158 (179)
T ss_pred ceeeEEEEecccCC
Confidence 78889999877543
No 90
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.25 E-value=9.4e-12 Score=130.25 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=108.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh----------ccc---cCCCCCcccHHHHHHHHH----HHH
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----------KDF---KYDDFSSLDLSLLSKNIS----DIR 581 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~----------~~~---n~d~p~t~D~~lL~~~L~----~L~ 581 (954)
+|||+|++||||||+++.|++ +|+.++++|...+.... ..+ -++..+..|...|.+.+. .++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999976 79999999998765110 011 123457888888887652 233
Q ss_pred cCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch-
Q 002197 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (954)
Q Consensus 582 ~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~- 660 (954)
.-+.+.+|..-........ . .....++|+|..+++...+...+|..|||++|.+.++.|.+.|+. .+.+.
T Consensus 80 ~L~~i~hP~v~~~~~~~~~--~---~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g----~s~e~a 150 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQ--T---TAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDG----MKKEDV 150 (196)
T ss_pred HHHHHhhHHHHHHHHHHHH--H---HhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCC----CCHHHH
Confidence 3345667765443322210 1 112368999999999988888999999999999999999999963 33222
Q ss_pred hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 661 ~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
........| +++....||++|.|+.+
T Consensus 151 ~~ri~~Q~~-----~~~k~~~aD~vI~N~~~ 176 (196)
T PRK14732 151 LARIASQLP-----ITEKLKRADYIVRNDGN 176 (196)
T ss_pred HHHHHHcCC-----HHHHHHhCCEEEECCCC
Confidence 222322222 33456789999999764
No 91
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.25 E-value=1.4e-11 Score=132.67 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=107.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh---------hc----cccCCCCCcccHHHHHHHHH----H
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------VK----DFKYDDFSSLDLSLLSKNIS----D 579 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~---------~~----~~n~d~p~t~D~~lL~~~L~----~ 579 (954)
+++|||||+.||||||+++.|++.+|+.+|++|...+.-. .. ..-.+..+.+|...|.+.+- .
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 3689999999999999999999988999999998877511 10 11122347899988888652 2
Q ss_pred HHcCCceecccccccccccCCc---cce--e-eccCccEEEEEeecccchhh-hhcCCeEEEEEcChhHHHHHHHhcCcc
Q 002197 580 IRNGRRTKVPIFDLETGARSGF---KEL--E-VSEDCGVIIFEGVYALHPEI-RKSLDLWIAVVGGVHSHLISRVQRDKS 652 (954)
Q Consensus 580 L~~g~~v~~P~yD~~~~dr~~~---~~~--~-~~~~~dVVIvEG~~~~~~~l-~~~~D~~I~v~~~~d~rl~Rri~RD~~ 652 (954)
++.-+.+.+|..-.....+... +.. . ......++++|.+++++..+ ...+|..|+|++|.+.++.|.+.|+
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~-- 158 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRN-- 158 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcC--
Confidence 3333456666543322111100 000 0 01123599999999998764 4578999999999999999998885
Q ss_pred ccccccch-hhHHhhhcchhhhhcccccCcccEEEcCC
Q 002197 653 RMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 653 ~rg~~~~~-~q~~~~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
|.+.+. .+......+.. ..+..||++|.|+
T Consensus 159 --g~s~eea~~Ri~~Q~~~~-----ek~~~aD~VI~N~ 189 (244)
T PTZ00451 159 --GFSKEEALQRIGSQMPLE-----EKRRLADYIIEND 189 (244)
T ss_pred --CCCHHHHHHHHHhCCCHH-----HHHHhCCEEEECC
Confidence 333222 23333333322 2356799999998
No 92
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.16 E-value=7.7e-11 Score=124.51 Aligned_cols=163 Identities=21% Similarity=0.280 Sum_probs=102.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh---------hc-cc---cC--CCCCc--ccHHHHHHHH
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------VK-DF---KY--DDFSS--LDLSLLSKNI 577 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~---------~~-~~---n~--d~p~t--~D~~lL~~~L 577 (954)
..+++|||+|++||||||+++.|.. +|+.+++.|...+.-. .. .+ .+ +..+. +|...|.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 4578999999999999999999987 8999999997765410 00 00 01 11232 6666665433
Q ss_pred H----HHHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccc
Q 002197 578 S----DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (954)
Q Consensus 578 ~----~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~ 653 (954)
. .++.-+.+.+|........... . ....+..++++|+.+++...+...+|..|+|++|.+++..|.+.|+..
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~--~-~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~- 157 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVD--R-AARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMG- 157 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHH--H-HHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCC-
Confidence 1 1222233555543322211110 0 011234799999999888888888999999999999999999999632
Q ss_pred cccccch-hhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 654 MGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 654 rg~~~~~-~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
+.+. .+......+... . ...||++|+|+.
T Consensus 158 ---s~e~~~~Ri~~q~~~~~-~----~~~ad~vI~N~g 187 (208)
T PRK14731 158 ---SREEIRRRIAAQWPQEK-L----IERADYVIYNNG 187 (208)
T ss_pred ---CHHHHHHHHHHcCChHH-H----HHhCCEEEECCC
Confidence 2221 223333333222 2 246999998875
No 93
>PRK01184 hypothetical protein; Provisional
Probab=99.16 E-value=1.2e-10 Score=120.08 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=87.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc-cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~-~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~ 140 (954)
|++|+|+|++||||||+|+ +++.+|++++++|+..+... ..+.+... +.+......+... .....+....+..+
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~--~~~g~~~~~~~~~--~~~~~~~~~~~~~i 75 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTD--ENIGKVAIDLRKE--LGMDAVAKRTVPKI 75 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCc--HHHHHHHHHHHHH--HChHHHHHHHHHHH
Confidence 5799999999999999998 56779999999988654322 22222111 1122211111110 00001101111111
Q ss_pred cccccccCCCcEEEEEecccch--hhhhcCCC---EEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhchhhhhccCC
Q 002197 141 GSKVIKGASSGVVIVDGTYALD--ARLRSLLD---IRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP 214 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll~--~~l~~~~D---~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~v~p~~~~~Iep 214 (954)
......++|++|+.... ..+++.++ ..|+|++|.+.+..|...|+.... .+.+.+.++.......-+.+
T Consensus 76 -----~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~ 150 (184)
T PRK01184 76 -----REKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGE 150 (184)
T ss_pred -----HhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHH
Confidence 11234689999984332 34445555 899999999999999998874322 23444444332211111222
Q ss_pred CcCcccEEEECC
Q 002197 215 DLHHAQIRINNR 226 (954)
Q Consensus 215 ~~~~ADiII~N~ 226 (954)
..+.||++|+|+
T Consensus 151 ~~~~ad~vI~N~ 162 (184)
T PRK01184 151 VIALADYMIVND 162 (184)
T ss_pred HHHhcCEEEeCC
Confidence 357899999987
No 94
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.16 E-value=5.4e-11 Score=123.45 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=105.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh---------h-ccc---cCCCCCcccHHHHHHHHH----HHH
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNIS----DIR 581 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~---------~-~~~---n~d~p~t~D~~lL~~~L~----~L~ 581 (954)
+|||+|++||||||+|+.|++..|+.++++|.+.+.-- . ..+ -++..|..|...|.+.+. .+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 58999999999999999999976799999999976410 0 011 123456788777776552 122
Q ss_pred cCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch-
Q 002197 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (954)
Q Consensus 582 ~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~- 660 (954)
.-+.+.+|.+-........ . ......++|+|..+++...+...+|..|++++|.+.++.|.+.|+ |.+.+.
T Consensus 81 ~le~ilhP~i~~~i~~~i~--~--~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~ 152 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLA--Q--FQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV 152 (188)
T ss_pred HHHHhhCHHHHHHHHHHHH--H--hhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 2234556654443322210 0 011225889999888877788899999999999999999999998 333222
Q ss_pred hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 661 ~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
.+......+.+ ..+..||++|.|+.+
T Consensus 153 ~~r~~~q~~~~-----~~~~~ad~vI~N~~~ 178 (188)
T TIGR00152 153 QKRLASQMDIE-----ERLARADDVIDNSAT 178 (188)
T ss_pred HHHHHhcCCHH-----HHHHhCCEEEECCCC
Confidence 22333333322 235679999999854
No 95
>COG4240 Predicted kinase [General function prediction only]
Probab=99.16 E-value=1e-10 Score=121.16 Aligned_cols=118 Identities=21% Similarity=0.325 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C---CeEEeccccccccc--------------cCC
Q 002197 45 YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G---CTLISMENYRVGVD--------------EGN 104 (954)
Q Consensus 45 ~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~L---g---~~VIs~Dd~y~~~~--------------~~~ 104 (954)
-.++...|.......++|++|||+||.||||||+|..|...| | +.-+|.||||.... -++
T Consensus 33 ~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RG 112 (300)
T COG4240 33 HLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRG 112 (300)
T ss_pred HHHHHHhhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccC
Confidence 344555555555567789999999999999999999987766 3 45689999998533 256
Q ss_pred CCCcccHHHHHHHHHhhhcCCc-cccccchhhhhcccccc----ccccCCCcEEEEEecccch
Q 002197 105 DLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSK----VIKGASSGVVIVDGTYALD 162 (954)
Q Consensus 105 ~p~s~D~~~l~~~L~~l~~g~~-i~~p~~d~~~~~~~~~~----~~~~~~~~vVIvEG~~ll~ 162 (954)
-|+++|...+.+.|..+..|++ +..|.||++.+...+.+ .....+.+++|+||.++..
T Consensus 113 lpGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGf 175 (300)
T COG4240 113 LPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGF 175 (300)
T ss_pred CCCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeec
Confidence 7899999999999999987754 79999999655544332 3333457999999998764
No 96
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.14 E-value=3.1e-11 Score=126.43 Aligned_cols=160 Identities=18% Similarity=0.211 Sum_probs=103.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchh---------hhccccCC-----CCCcccHHHHHHHHH----
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---------QVKDFKYD-----DFSSLDLSLLSKNIS---- 578 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~---------~~~~~n~d-----~p~t~D~~lL~~~L~---- 578 (954)
+++|||+|++||||||+|+.+++ +|++++++|++.+.- ...+ .|+ .-+.+|...|.+.+-
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~-~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAE-RFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHH-HcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 57999999999999999999999 999999999998841 1111 122 234555555555431
Q ss_pred HHHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCcccccccc
Q 002197 579 DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (954)
Q Consensus 579 ~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~ 658 (954)
.+..-+.+.+|......- .. .. .....++++|-.+++.......+|..|.|++|.++|++|.+.|+...++.
T Consensus 80 ~~~~Le~i~hPli~~~~~-~~----~~-~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~-- 151 (201)
T COG0237 80 ARLKLEKILHPLIRAEIK-VV----ID-GARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEED-- 151 (201)
T ss_pred HHHHHHHhhhHHHHHHHH-HH----HH-HhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHH--
Confidence 122223455554322211 00 00 01123888898888876666669999999999999999999998322111
Q ss_pred chhhHHhhhcchhhhhcccccCcccEEEcCCCCC
Q 002197 659 SQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (954)
Q Consensus 659 ~~~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~ 692 (954)
.........+..+++ ..||++++|++..
T Consensus 152 -~~~~~~~Q~~~~ek~-----~~ad~vi~n~~~i 179 (201)
T COG0237 152 -AEARLASQRDLEEKL-----ALADVVIDNDGSI 179 (201)
T ss_pred -HHHHHHhcCCHHHHH-----hhcCChhhcCCCH
Confidence 122333455555553 6799999999754
No 97
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.11 E-value=2.1e-10 Score=113.09 Aligned_cols=139 Identities=16% Similarity=0.208 Sum_probs=86.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
+|.|+|++||||||+|+.|++.+|+++++.|.+.............+...+.+.+.. ....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~------------------~~~~- 61 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDE------------------RQRE- 61 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhcccHhHHHHHHH------------------HHHH-
Confidence 589999999999999999999999999999954321100000000000111111111 0000
Q ss_pred ccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc--cCHHHHHHhh----chhhhhccCCCc-
Q 002197 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSI----FPLFRKHIEPDL- 216 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r--~~~e~~~~~v----~p~~~~~Iep~~- 216 (954)
......+|+||.++... +.+.+|++||+++|++.+..|+..|+...+ .+.+++.+.+ .+....|+.|+.
T Consensus 62 ---~~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 137 (147)
T cd02020 62 ---LAKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKL 137 (147)
T ss_pred ---HhhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccC
Confidence 11123588899876432 245689999999999999999999764322 3555554433 556678888885
Q ss_pred CcccEEEEC
Q 002197 217 HHAQIRINN 225 (954)
Q Consensus 217 ~~ADiII~N 225 (954)
..-|++|+.
T Consensus 138 ~~~dl~i~~ 146 (147)
T cd02020 138 AEDAIVIDT 146 (147)
T ss_pred CCCcEEEeC
Confidence 445577764
No 98
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.10 E-value=1.2e-10 Score=119.04 Aligned_cols=166 Identities=15% Similarity=0.149 Sum_probs=115.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh---------h-cccc---CCCCCcccHHHHHHHHH----H
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDFK---YDDFSSLDLSLLSKNIS----D 579 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~---------~-~~~n---~d~p~t~D~~lL~~~L~----~ 579 (954)
.++||++|++||||||+++.+. .+|+++|+.|...+..- . ..+. .-..+.+|.+.|.+.+- .
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 4799999999999999999998 68999999998877511 0 1111 11346677777766442 1
Q ss_pred HHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccc
Q 002197 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (954)
Q Consensus 580 L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~ 659 (954)
...-..+.+|...+..-.-.. .....+..++|+|-+++|+..+.+.+-..|.|.+|.++.++|.+.||...+..
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~---~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~d--- 153 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEIL---KLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEED--- 153 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHH---
Confidence 222345667776554322110 11235678999999999998888999999999999999999999998322111
Q ss_pred hhhHHhhhcchhhhhcccccCcccEEEcCCCCCCC
Q 002197 660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694 (954)
Q Consensus 660 ~~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl 694 (954)
.........|..++ .+.||+||+|+-++.-
T Consensus 154 Ae~Rl~sQmp~~~k-----~~~a~~Vi~Nng~~~~ 183 (225)
T KOG3220|consen 154 AENRLQSQMPLEKK-----CELADVVIDNNGSLED 183 (225)
T ss_pred HHHHHHhcCCHHHH-----HHhhheeecCCCChHH
Confidence 12345556666554 3679999999987743
No 99
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.10 E-value=1.2e-10 Score=111.34 Aligned_cols=116 Identities=25% Similarity=0.344 Sum_probs=76.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCC--cccHHHHHHHHHHHHcCCceeccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFS--SLDLSLLSKNISDIRNGRRTKVPIFDLETG 596 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~--t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~ 596 (954)
+|+|+|+|||||||+|+.|++.+|+.++++|+++..........+.+. ..+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN-------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence 689999999999999999999999999999995443222211111121 2233444555544322
Q ss_pred ccCCccceeeccCccEEEEEeecccchh-hhhcCCeEEEEEcChhHHHHHHHhcCcccccccc
Q 002197 597 ARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (954)
Q Consensus 597 dr~~~~~~~~~~~~dVVIvEG~~~~~~~-l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~ 658 (954)
....+.+|+||.+..... .....|..+|++.+.+.++.|++.|...++|+..
T Consensus 67 ----------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~ 119 (121)
T PF13207_consen 67 ----------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDR 119 (121)
T ss_dssp ----------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSC
T ss_pred ----------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCC
Confidence 123578999996652111 2234568999999988788888888777777653
No 100
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.09 E-value=1.2e-10 Score=115.35 Aligned_cols=115 Identities=26% Similarity=0.340 Sum_probs=84.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~d 597 (954)
++|.|+|++||||||+|+.|++.+|..++|...+|+..... .+ .++.-+.+. .-..|.+|+....
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e-~g------msl~ef~~~--------AE~~p~iD~~iD~ 65 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE-RG------MSLEEFSRY--------AEEDPEIDKEIDR 65 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH-cC------CCHHHHHHH--------HhcCchhhHHHHH
Confidence 37899999999999999999999999999999999963211 11 222222221 1246778887766
Q ss_pred cCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccc
Q 002197 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (954)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~ 653 (954)
|.- +. .. .+-+|+||-++++-. +...|++||+.+|..+|..|-..|+...
T Consensus 66 rq~--e~--a~-~~nvVlegrLA~Wi~-k~~adlkI~L~Apl~vRa~Ria~REgi~ 115 (179)
T COG1102 66 RQK--EL--AK-EGNVVLEGRLAGWIV-REYADLKIWLKAPLEVRAERIAKREGID 115 (179)
T ss_pred HHH--HH--HH-cCCeEEhhhhHHHHh-ccccceEEEEeCcHHHHHHHHHHhcCCC
Confidence 541 11 12 567899999998721 2678999999999999999999998443
No 101
>PRK06217 hypothetical protein; Validated
Probab=99.07 E-value=7.2e-10 Score=114.59 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=73.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC--CCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG--NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~--~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
|..|.|+|++||||||+|+.|++.+|++++++|++++..... ..... +...+...+..+.
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------- 62 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRP-PEERLRLLLEDLR----------------- 62 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCC-HHHHHHHHHHHHh-----------------
Confidence 456999999999999999999999999999999988632211 01111 1111111111110
Q ss_pred ccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002197 140 IGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~ 192 (954)
..+-+|+||.+... ..+...+|.+|||++|.++++.|...|...
T Consensus 63 ---------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 63 ---------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred ---------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 11247888988765 456678999999999999999999998743
No 102
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.04 E-value=1.1e-09 Score=113.11 Aligned_cols=127 Identities=25% Similarity=0.450 Sum_probs=105.1
Q ss_pred hcccccccCCCCCCCCCcCCc-ceEEEEee-CCEEEEEeeccccccCcccccceeEEeh-----------hhHHHHHHHh
Q 002197 729 NFIDMYLRLPGIPTNGQLTES-DCIRVRIC-EGRFALLIREPLREGNFIIQPKVDFDIS-----------ISTVAGLLNL 795 (954)
Q Consensus 729 ~y~~~Y~~~~~l~~~~~~~~~-~~irir~~-~~~~~l~~~~~~~d~~~~~~~~~~~~v~-----------~~~~~~l~~l 795 (954)
.+.|+||..| +..+..+ .|||||.. ++++++|+|+|..++. +++++++|+ ..+...|.++
T Consensus 34 ~~~d~Y~dt~----~~~L~~~~~~lRiR~~~~~~~~lTlK~~~~~~~---~~e~~~~~~r~e~e~~i~~~~~~~~~l~~l 106 (185)
T PF01928_consen 34 HQTDTYFDTP----DRDLRKAGIALRIRRENGDGWYLTLKGPGSDGP---REEIEFEVSREEYEAPISDAEEMREILEAL 106 (185)
T ss_dssp EEEEEEEEET----TTHHHHTTSEEEEEEETTTEEEEEEEEESSSSS---EEEEEEEESHHCCEEEHSHHHHHHHHHHHT
T ss_pred EEEEEEEeCC----ChhHHhCCcEEEEEeecCCccEEEEEccCccCc---ccccceeecchhhhccccchHHHHHHHHHh
Confidence 4679999888 4444444 59999976 7777799999999998 777777775 4568899999
Q ss_pred CceeeeeeeeeeEEeecCcEEEEEecccCCCCceEEE--ecccHHHHHHHHhh-------cCC-CCCccchhHHHHH
Q 002197 796 GYQAVAYIEASAFIYQDGKILIEVDHLQDAPSPYLQI--KGVDKEAVAAAGST-------LKL-DGSYTTKSYLQII 862 (954)
Q Consensus 796 g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~v~~~~~~-------l~~-~~~~~~~syle~~ 862 (954)
||.++..+.+.|+.|..++++|++|.++++.-.|+|| .+.+.+.+.+++.+ ||+ +.+.++++|++|+
T Consensus 107 ~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y~~l~ 183 (185)
T PF01928_consen 107 GLRPVARIEKKRRSYRLEGVEVELDEVDGLPGTFLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSYLELL 183 (185)
T ss_dssp TCEEEEEEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHHHHHC
T ss_pred cCceeEEEEEEEEEEEECCEEEEEEEEecceEEEEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHHHHhh
Confidence 9999999999999999999999999999992277777 77777777666666 999 6688999999985
No 103
>PRK04182 cytidylate kinase; Provisional
Probab=99.02 E-value=6.9e-10 Score=113.30 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=84.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
+|+|+|++||||||+|+.|++.+|++++++|++++......... ...+.+ . +. ..|.++.........
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~---~~~~~~----~--~~--~~~~~~~~~~~~~~~- 69 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMS---LEEFNK----Y--AE--EDPEIDKEIDRRQLE- 69 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCC---HHHHHH----H--hh--cCchHHHHHHHHHHH-
Confidence 79999999999999999999999999999988766543221111 111111 0 00 111111111111110
Q ss_pred ccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHH-Hhhch---hhhhcc---CCCc
Q 002197 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI-DSIFP---LFRKHI---EPDL 216 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~-~~v~p---~~~~~I---ep~~ 216 (954)
. ......+|++|.+... -+.+..++.|||++|.+.++.|...|+..........+ +.... .+..+. ++..
T Consensus 70 -~-~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~ 146 (180)
T PRK04182 70 -I-AEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDL 146 (180)
T ss_pred -H-HhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 1 1022346677764422 11234789999999999999999888643222111111 11111 122222 3445
Q ss_pred CcccEEEECCCC
Q 002197 217 HHAQIRINNRFV 228 (954)
Q Consensus 217 ~~ADiII~N~~~ 228 (954)
..||++|+++..
T Consensus 147 ~~~d~~idt~~~ 158 (180)
T PRK04182 147 SIYDLVINTSRW 158 (180)
T ss_pred ccccEEEECCCC
Confidence 789999998754
No 104
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.02 E-value=1.3e-09 Score=107.42 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=88.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
+|.|+|++||||||+|+.|++.+|++++++|......- ....-..+ +...+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-~~~~~~~~---~~~~i~~~l~~~~~---------------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-GKLASEVA---AIPEVRKALDERQR---------------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-HHHHHHhc---ccHhHHHHHHHHHH----------------
Confidence 58899999999999999999999999999996544311 00000000 01111111111100
Q ss_pred CCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCcccc-ccccch--hhHHhhhcchhhhhc
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM-GCFMSQ--NDIMMTVFPMFQQHI 675 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~r-g~~~~~--~q~~~~v~p~~~~~I 675 (954)
.+ .....+|+||+++.+- +.+.+|+.||+++|.+.+..|+..|+...+ |.+.+. ..+...-.+.+..|+
T Consensus 61 ----~~---~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 61 ----EL---AKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred ----HH---hhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 00 1123578899987552 245689999999999999999999874322 333332 233334456677888
Q ss_pred cccc-CcccEEEcC
Q 002197 676 EPHL-VHAHLKIRN 688 (954)
Q Consensus 676 ep~~-~~ADivI~n 688 (954)
.|+. ...|++|+.
T Consensus 133 ~~~~~~~~dl~i~~ 146 (147)
T cd02020 133 APLKLAEDAIVIDT 146 (147)
T ss_pred ccccCCCCcEEEeC
Confidence 8775 455677764
No 105
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.02 E-value=5e-10 Score=129.21 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=100.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch----hh-----h----ccccCCCCCcccHHHHHHHHHH----H
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V----KDFKYDDFSSLDLSLLSKNISD----I 580 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~----~~-----~----~~~n~d~p~t~D~~lL~~~L~~----L 580 (954)
++|||+|++||||||+|+.|++ +|+.+|++|...+. .. . +....+..+++|...|.+.+-. +
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999988 89999999998775 11 0 1111234578898888876522 2
Q ss_pred HcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch
Q 002197 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (954)
Q Consensus 581 ~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~ 660 (954)
+.-+.+.+|..-..... .........++++|..+++...+...+|..|||++|.+.++.|...|+ |.+.+.
T Consensus 81 ~~le~i~hP~I~~~i~~-----~i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rR----g~s~~~ 151 (395)
T PRK03333 81 AVLNGIVHPLVGARRAE-----LIAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQR----GMAEAD 151 (395)
T ss_pred HHHHHhhhHHHHHHHHH-----HHHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcC----CCCHHH
Confidence 22233455543322111 111112234555555656667888899999999999999999987753 333222
Q ss_pred -hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 661 -~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
...+....+. ++....||++|+|+.+
T Consensus 152 a~~ri~~Q~~~-----e~k~~~AD~vIdN~~s 178 (395)
T PRK03333 152 ARARIAAQASD-----EQRRAVADVWLDNSGT 178 (395)
T ss_pred HHHHHHhcCCh-----HHHHHhCCEEEECCCC
Confidence 1122222221 2335679999998764
No 106
>PRK06217 hypothetical protein; Validated
Probab=99.01 E-value=9.1e-10 Score=113.86 Aligned_cols=106 Identities=20% Similarity=0.188 Sum_probs=74.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~d 597 (954)
..|.|.|++||||||+|+.|++.+|+.++++|++++......+....+.. ..+...+..+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------------- 62 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPE---ERLRLLLEDLR---------------- 62 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHH---HHHHHHHHHHh----------------
Confidence 45899999999999999999999999999999999742211110111111 11111111111
Q ss_pred cCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccc
Q 002197 598 RSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (954)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~ 653 (954)
..+-+|+||.+... ..+...+|..||+++|.+.++.|...|....
T Consensus 63 -----------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~ 108 (183)
T PRK06217 63 -----------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQR 108 (183)
T ss_pred -----------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccc
Confidence 12357889998754 4566779999999999999999999997654
No 107
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.99 E-value=9.7e-10 Score=129.48 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=89.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh----ccccCCCCCcccHHHHHHHHHHHH-----cCCce
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIR-----NGRRT 586 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~----~~~n~d~p~t~D~~lL~~~L~~L~-----~g~~v 586 (954)
++.+|+|+||+||||||+|+.|++.||..+++.|+||+.... ...+++++.++ ..+.+.+.-.. .+..+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~~i 360 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSDLKIELKPSSGSPQRV 360 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhcCCeeeccCCCCCceE
Confidence 567999999999999999999999999999999999997321 22334443332 33333332222 23468
Q ss_pred ecccccccccccCCccce-------------------eeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHH
Q 002197 587 KVPIFDLETGARSGFKEL-------------------EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV 647 (954)
Q Consensus 587 ~~P~yD~~~~dr~~~~~~-------------------~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri 647 (954)
.+|.||.+.+-|...-.. .......-+|+||--++.--+ +..|++||++++.+.+..||.
T Consensus 361 ~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~-P~AdlKIfL~As~evRa~RR~ 439 (512)
T PRK13477 361 WINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVF-PDAELKIFLTASVEERARRRA 439 (512)
T ss_pred EeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEc-CCCCEEEEEECCHHHHHHHHH
Confidence 889999887655421000 000112348999988765222 347999999999999999987
Q ss_pred hcC
Q 002197 648 QRD 650 (954)
Q Consensus 648 ~RD 650 (954)
.+.
T Consensus 440 ~~l 442 (512)
T PRK13477 440 LDL 442 (512)
T ss_pred hhh
Confidence 663
No 108
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.98 E-value=2.2e-09 Score=108.79 Aligned_cols=151 Identities=20% Similarity=0.165 Sum_probs=86.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~ 142 (954)
++|+|+|++||||||+|+.|++.+|++++++|++++........ +...+..... ..|.+..........
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~--------~~~~~~~~~~~~i~~ 69 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGL---DLIEFLNYAE--------ENPEIDKKIDRRIHE 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCC---CHHHHHHHHh--------cCcHHHHHHHHHHHH
Confidence 37999999999999999999999999999998876643321111 1111111100 011111111111100
Q ss_pred cccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHH-hh---chhhhhcc---CCC
Q 002197 143 KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID-SI---FPLFRKHI---EPD 215 (954)
Q Consensus 143 ~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~-~v---~p~~~~~I---ep~ 215 (954)
.......+|++|.+... .+...+|+.|||++|.+++..|...|+..........+. +. ...+..+. +-.
T Consensus 70 ---~~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~ 145 (171)
T TIGR02173 70 ---IALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDD 145 (171)
T ss_pred ---HHhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 01122457779976532 224568999999999999999999997644322222211 11 11122222 223
Q ss_pred cCcccEEEECCCC
Q 002197 216 LHHAQIRINNRFV 228 (954)
Q Consensus 216 ~~~ADiII~N~~~ 228 (954)
...-|++|+.+..
T Consensus 146 ~~~ydl~i~t~~~ 158 (171)
T TIGR02173 146 LSIYDLVINTSNW 158 (171)
T ss_pred cccccEEEECCCC
Confidence 5677899988743
No 109
>PRK08118 topology modulation protein; Reviewed
Probab=98.96 E-value=3.9e-09 Score=107.80 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=70.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~ 141 (954)
|..|.|.|++||||||+|+.|++.+|++++++|.++.... +... ..+...+.+..+..
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~-w~~~---~~~~~~~~~~~~~~------------------ 58 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN-WEGV---PKEEQITVQNELVK------------------ 58 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC-CcCC---CHHHHHHHHHHHhc------------------
Confidence 3569999999999999999999999999999999765311 1111 11122222222111
Q ss_pred ccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 142 SKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.+-+|+||.+.-. ......+|.+||+|+|.+.++.|.+.|..
T Consensus 59 --------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 59 --------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred --------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 1248999988743 33346799999999999999999988854
No 110
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.92 E-value=2.3e-09 Score=102.53 Aligned_cols=104 Identities=27% Similarity=0.363 Sum_probs=65.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc--ccccCCCCC----cccHHHHHHHHHhhhcCCccccccchhhhh
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV--GVDEGNDLD----SIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~--~~~~~~~p~----s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
+|+|+|++||||||+|+.|++.+|+.++++|+++. ++....... ..+.+.+...+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN-------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence 69999999999999999999999999999999432 333222111 1112222222222211
Q ss_pred ccccccccccCCCcEEEEEecccchhh-hhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 138 NRIGSKVIKGASSGVVIVDGTYALDAR-LRSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~ll~~~-l~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
......+|+||.+..... .....|..+|++++.+.+..|+++|.
T Consensus 67 ---------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 67 ---------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp ---------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred ---------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHH
Confidence 233568999997662212 22355788999998886666666654
No 111
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.92 E-value=4.4e-09 Score=123.95 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=102.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccccc---CCCCCcccHHHHHHHHHhhh--------cCCcccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLT--------EGKDTLI 129 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~---~~~p~s~D~~~l~~~L~~l~--------~g~~i~~ 129 (954)
++.+|+|+||+||||||+|+.|++.||+.++++|.+|+.+.. ....+..|...+...+..+. .+..+..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~ 362 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWI 362 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEe
Confidence 568999999999999999999999999999999999996421 11122223333433333221 1223555
Q ss_pred ccchhhhhcccccc--------------------ccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 002197 130 PMFDYQQKNRIGSK--------------------VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (954)
Q Consensus 130 p~~d~~~~~~~~~~--------------------~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~R 189 (954)
+.++...+-+...- ........-+|+||--... .+.+.+|++||++++.+.+.+|+..+
T Consensus 363 ~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt-vV~P~AdlKIfL~As~evRa~RR~~~ 441 (512)
T PRK13477 363 NGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT-HVFPDAELKIFLTASVEERARRRALD 441 (512)
T ss_pred CCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee-EEcCCCCEEEEEECCHHHHHHHHHhh
Confidence 65554433321100 0000112348999986654 23356899999999999999998766
Q ss_pred ccCCc---cCHHHHHHh----hchhhhhccCCCcCc-ccEEEECCCCC
Q 002197 190 DIGDS---CSLDSLIDS----IFPLFRKHIEPDLHH-AQIRINNRFVS 229 (954)
Q Consensus 190 D~~~r---~~~e~~~~~----v~p~~~~~Iep~~~~-ADiII~N~~~~ 229 (954)
..... .+.+.+.+. ......+.+.|.... ++++|+++..+
T Consensus 442 l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~ls 489 (512)
T PRK13477 442 LQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLS 489 (512)
T ss_pred hhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCC
Confidence 33211 234444333 233444556675444 67888888543
No 112
>PRK06762 hypothetical protein; Provisional
Probab=98.90 E-value=1.6e-08 Score=102.54 Aligned_cols=135 Identities=18% Similarity=0.131 Sum_probs=82.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh--CCeEEeccccccccc-cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L--g~~VIs~Dd~y~~~~-~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
+.+|+|+|++||||||+|+.|++.+ ++.+++.|.+++.+. ..+.++....+.+.+.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~----------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYG----------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHH-----------------
Confidence 5789999999999999999999998 577889888866432 12233333333322221110
Q ss_pred cccccccccCCCcEEEEEecccch------hhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhh
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALD------ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~------~~l~~~~---D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~ 209 (954)
......+|+|+.+.-. ..+...+ ...+|+++|.++++.|...|......+ +..++.++...+
T Consensus 65 --------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~-~~~l~~~~~~~~ 135 (166)
T PRK06762 65 --------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFG-EDDMRRWWNPHD 135 (166)
T ss_pred --------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCC-HHHHHHHHhhcC
Confidence 1123578888886432 2233222 378999999999999999997532222 333333322222
Q ss_pred hccCCCcCcccEEEECCC
Q 002197 210 KHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 210 ~~Iep~~~~ADiII~N~~ 227 (954)
. + ..++.+|+++-
T Consensus 136 ~---~--~~~~~~~~~~~ 148 (166)
T PRK06762 136 T---L--GVIGETIFTDN 148 (166)
T ss_pred C---c--CCCCeEEecCC
Confidence 2 1 23566776663
No 113
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.90 E-value=5.6e-09 Score=105.81 Aligned_cols=114 Identities=22% Similarity=0.287 Sum_probs=69.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~d 597 (954)
++|+|+|++||||||+|+.|++.+|+.++++|++++.... ..+. +...+.... .. .|.++.....
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~-~~g~------~~~~~~~~~---~~-----~~~~~~~~~~ 65 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA-KMGL------DLIEFLNYA---EE-----NPEIDKKIDR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH-HcCC------CHHHHHHHH---hc-----CcHHHHHHHH
Confidence 3799999999999999999999999999999988764211 1111 111100000 00 0100000000
Q ss_pred cCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
+. .......+.+|+||.+..+ .+.+.+|+.|||++|.+.+..|...|+.
T Consensus 66 ~i----~~~~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 66 RI----HEIALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred HH----HHHHhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccC
Confidence 00 0001123467789988654 1245678999999999999999988863
No 114
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=98.88 E-value=8.9e-09 Score=106.44 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=102.1
Q ss_pred hcccccccCCCCCCCCCcCCcc-eEEEEeeCCEEEEEeeccccccCcccccceeEEeh---------------hhHHHHH
Q 002197 729 NFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLREGNFIIQPKVDFDIS---------------ISTVAGL 792 (954)
Q Consensus 729 ~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~---------------~~~~~~l 792 (954)
.-.++||..| +.+++.++ .||||..++++.+|+|+|.. ..|+|+|.+|+ ..+...|
T Consensus 28 ~q~n~Yfdtp----~~~l~~~~~aLRiR~~~~~~~~TlK~~~~----~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~L 99 (180)
T cd07762 28 KQTNYYFDTP----DFALKKKHSALRIREKEGKAELTLKVPQE----VGLLETNQPLTLEEAEKLIKGGTLPEGEILDKL 99 (180)
T ss_pred EEEEEEEeCC----CHHHHhCCcEEEEEeeCCeEEEEEeeCCC----CCCcEEeecCCHHHHHHHhccccCCchHHHHHH
Confidence 3468999888 66776666 89999999999999999985 78999999996 3788999
Q ss_pred HHhCcee-----eeeeeeeeEEeecCcEEEEEecccCCCCceEEE------ecccHHHHHHHHhhcCCCCCcc
Q 002197 793 LNLGYQA-----VAYIEASAFIYQDGKILIEVDHLQDAPSPYLQI------KGVDKEAVAAAGSTLKLDGSYT 854 (954)
Q Consensus 793 ~~lg~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~v~~~~~~l~~~~~~~ 854 (954)
.+|||.. ++.+++.|..|..++.++++|++..+|..+.|| ....++.+.++++++||+-...
T Consensus 100 ~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~~ 172 (180)
T cd07762 100 KELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRPA 172 (180)
T ss_pred HHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCcccC
Confidence 9999985 899999999999999999999999999666888 2456888999999999976544
No 115
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.87 E-value=7.2e-09 Score=110.28 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=93.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc-----cCCCCCcccHHHHHHHHHhhh--------------
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDLDSIDFDALVQNLQDLT-------------- 122 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~-----~~~~p~s~D~~~l~~~L~~l~-------------- 122 (954)
+++|+|+||+||||||+++.|++.+|+.++++|++|+... .+-.. .+...+...+..+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDL--TSEDALAELISHLDIRFIPTNGEVEVFL 79 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCC--CCHHHHHHHHHhCCCEEecCCCceeEEE
Confidence 3789999999999999999999999999999999987431 11111 12233322222210
Q ss_pred cCCc-----------------cccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHH
Q 002197 123 EGKD-----------------TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLIS 185 (954)
Q Consensus 123 ~g~~-----------------i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~R 185 (954)
++.. ..+|.+.......... .....-+|+||-..... +.+..|+++|+++|.+.+.+|
T Consensus 80 ~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~----~a~~~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~~Ra~R 154 (217)
T TIGR00017 80 NGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQQA----LAKNDGIIADGRDIGTV-VFPNAEVKIFLDASVEERAKR 154 (217)
T ss_pred cCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHH----HhhcCCEEEEEcCcceE-EeCCCCEEEEEECCHHHHHHH
Confidence 0000 1122222222111111 11223589999875443 334489999999999999999
Q ss_pred HHHhccCCc--cCHHHHHHhhch----hhhhccCCCcCccc-EEEECCC
Q 002197 186 KVQYDIGDS--CSLDSLIDSIFP----LFRKHIEPDLHHAQ-IRINNRF 227 (954)
Q Consensus 186 ri~RD~~~r--~~~e~~~~~v~p----~~~~~Iep~~~~AD-iII~N~~ 227 (954)
+..|....+ .+.+++.+.+.. ...+...|.....| ++|+++.
T Consensus 155 r~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~ 203 (217)
T TIGR00017 155 RYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSN 203 (217)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCC
Confidence 999976542 344555544422 23344456544444 4466653
No 116
>PRK07261 topology modulation protein; Provisional
Probab=98.87 E-value=9.8e-09 Score=105.25 Aligned_cols=99 Identities=20% Similarity=0.283 Sum_probs=72.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
.|+|+|++||||||+|+.|++.+|+++++.|.++.... +. ..+.+.+...+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-~~---~~~~~~~~~~~~~~~--------------------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-WQ---ERDDDDMIADISNFL--------------------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-cc---cCCHHHHHHHHHHHH---------------------
Confidence 48999999999999999999999999999999765211 11 112233333332221
Q ss_pred ccccCCCcEEEEEecccch--hhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002197 144 VIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~--~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~ 192 (954)
.... +|+||.|.-. ......+|.+||+++|...++.|.++|...
T Consensus 57 ----~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 57 ----LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred ----hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 1123 8999999753 344467999999999999999999999764
No 117
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.86 E-value=7.3e-09 Score=105.57 Aligned_cols=152 Identities=18% Similarity=0.270 Sum_probs=102.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh--------CCeEEeccccccccc----------------cCCCCCcccHHHHHH
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI--------GCTLISMENYRVGVD----------------EGNDLDSIDFDALVQ 116 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L--------g~~VIs~Dd~y~~~~----------------~~~~p~s~D~~~l~~ 116 (954)
-|++||++||.||||||++-+|-..+ .+..+|.|+||...+ -++-++++|+..+.+
T Consensus 30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~e 109 (282)
T KOG2878|consen 30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVE 109 (282)
T ss_pred CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHH
Confidence 38999999999999999999886544 256799999998532 246689999999999
Q ss_pred HHHhhhcCC----ccccccchhhhhcc----ccccc-cccCCCcEEEEEecccchhhh----------------------
Q 002197 117 NLQDLTEGK----DTLIPMFDYQQKNR----IGSKV-IKGASSGVVIVDGTYALDARL---------------------- 165 (954)
Q Consensus 117 ~L~~l~~g~----~i~~p~~d~~~~~~----~~~~~-~~~~~~~vVIvEG~~ll~~~l---------------------- 165 (954)
.|..+..+. .+..|.||++.... ..... ....+..++|+||.++....+
T Consensus 110 vLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~VN~kL 189 (282)
T KOG2878|consen 110 VLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEVVNKKL 189 (282)
T ss_pred HHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccCcccccHHHHhhHH
Confidence 998876543 48899999875443 32222 223367899999998865221
Q ss_pred -------hcCCCEEEEEEc-CHHHHHHHHHHhc------cCCc---cCHHHHHHhhchhhhhcc
Q 002197 166 -------RSLLDIRVAVVG-GVHFSLISKVQYD------IGDS---CSLDSLIDSIFPLFRKHI 212 (954)
Q Consensus 166 -------~~~~D~~I~Vda-~~~~rl~Rri~RD------~~~r---~~~e~~~~~v~p~~~~~I 212 (954)
....|..|.+.+ +..--.+||++.+ +..+ +...++.++++|.|..|+
T Consensus 190 ~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~FV~rYmP~Yk~YL 253 (282)
T KOG2878|consen 190 EAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVNDFVSRYMPAYKAYL 253 (282)
T ss_pred HHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHHHHHhhhhHHHhhh
Confidence 011222233333 3344455554433 2333 345567788999999976
No 118
>PRK08118 topology modulation protein; Reviewed
Probab=98.85 E-value=7.1e-09 Score=105.90 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=73.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
.|.|.||+||||||+|+.|++.+++.++++|+.++.. ++.... -+...+.+..+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-----~w~~~~---~~~~~~~~~~~~~---------------- 58 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-----NWEGVP---KEEQITVQNELVK---------------- 58 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-----CCcCCC---HHHHHHHHHHHhc----------------
Confidence 4788999999999999999999999999999998631 121111 1112222222111
Q ss_pred CCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCcccccc
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~ 656 (954)
.+-+|+||.+... +...+.+|..||+++|.+.++.|.+.|....+|.
T Consensus 59 -----------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~ 106 (167)
T PRK08118 59 -----------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGK 106 (167)
T ss_pred -----------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCC
Confidence 1347899988743 4445679999999999999999999997765554
No 119
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.85 E-value=1.8e-08 Score=104.93 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=99.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccccc---CCCCCcccHHHHHHHHHhhh-----------cCCcc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLT-----------EGKDT 127 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~---~~~p~s~D~~~l~~~L~~l~-----------~g~~i 127 (954)
.++|+|.||+||||||+|+.||+.||+..+++..+|+.+.- ....+..|.+.+...+..+. +|+.+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv 83 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV 83 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence 38999999999999999999999999999999999995321 12223334444444444321 11122
Q ss_pred ccccchhhhhccc-------------cccccc-cCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCC
Q 002197 128 LIPMFDYQQKNRI-------------GSKVIK-GASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGD 193 (954)
Q Consensus 128 ~~p~~d~~~~~~~-------------~~~~~~-~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~ 193 (954)
....-.......+ ...... ....+-+|+||-=... .+.+.++++||+++++++|.+||.+.....
T Consensus 84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~~~~ 162 (222)
T COG0283 84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQLQAK 162 (222)
T ss_pred hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 1111111111110 000001 1122448888865542 445778999999999999999998877655
Q ss_pred c--cCHHHHHHhh----chhhhhccCCCcCcccEEE-ECC
Q 002197 194 S--CSLDSLIDSI----FPLFRKHIEPDLHHAQIRI-NNR 226 (954)
Q Consensus 194 r--~~~e~~~~~v----~p~~~~~Iep~~~~ADiII-~N~ 226 (954)
. ...+++.+.+ .....+-+.|-++..|.++ +++
T Consensus 163 g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs 202 (222)
T COG0283 163 GFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTS 202 (222)
T ss_pred cCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECC
Confidence 5 2245544432 3344444778878777554 666
No 120
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.85 E-value=1.2e-08 Score=102.25 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=69.6
Q ss_pred cccccccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEeeh---hHHHHHHhcCCceeEEEEEEEEEEEeCCEEE
Q 002197 273 ATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVYGNLSV 349 (954)
Q Consensus 273 ~~deal~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~~~v~K~R~~~~~~~~~i 349 (954)
..++++ |||..++++.||||||+.+ ++|.|+|+.+ ....++. +.....++|.|..|.+++.++
T Consensus 32 ~~~~~l-----RiR~~~~~~~lT~K~~~~~------~~R~E~E~~i~~~~~~~l~~---~~~~~~I~K~R~~~~~~~~~~ 97 (148)
T cd07891 32 DPERTV-----RVRIAGDRAYLTIKGPTNG------LSRYEFEYEIPLADAEELLA---LCEGPVIEKTRYRVPHGGHTW 97 (148)
T ss_pred CCCcEE-----EEEEeCCEEEEEEEeCCCC------ceEEEEEEeCCHHHHHHHHh---cCCCCeEEEEEEEEEeCCEEE
Confidence 445677 9999999999999998643 5899999999 3333443 677899999999999999999
Q ss_pred EEecCCCCCCC--eEEEEecChh
Q 002197 350 SFETIDTLDET--FMVLRGTNRK 370 (954)
Q Consensus 350 ~lD~v~~lG~~--FvEiE~~~~~ 370 (954)
+||.++|+|.. |+|||..+++
T Consensus 98 ~lD~~~g~~~gL~~~EiE~~~e~ 120 (148)
T cd07891 98 EVDVFHGENAGLVVAEIELPSED 120 (148)
T ss_pred EEEEEcCCCCceEEEEEEcCCcc
Confidence 99999999975 9999987543
No 121
>PRK07261 topology modulation protein; Provisional
Probab=98.84 E-value=8.9e-09 Score=105.56 Aligned_cols=105 Identities=24% Similarity=0.256 Sum_probs=77.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
.|+|.|++||||||||+.|++.++..++++|++++.. ++. ..+.+.+.+.+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-----~~~---~~~~~~~~~~~~~~~----------------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-----NWQ---ERDDDDMIADISNFL----------------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-----ccc---cCCHHHHHHHHHHHH-----------------
Confidence 4889999999999999999999999999999998632 111 122233333332211
Q ss_pred CCccceeeccCccEEEEEeeccc-c-hhhhhcCCeEEEEEcChhHHHHHHHhcCcccccccc
Q 002197 599 SGFKELEVSEDCGVIIFEGVYAL-H-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~-~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~ 658 (954)
.... +|+||.+.- . +...+.+|..||++.|...++.|.+.|+...+|...
T Consensus 57 ---------~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r 108 (171)
T PRK07261 57 ---------LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTR 108 (171)
T ss_pred ---------hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcC
Confidence 1123 899999975 2 555567999999999999999999999987777654
No 122
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.84 E-value=1.1e-08 Score=109.64 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=93.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccccc---CCCCCcccHHHHHHHHHhhhc--------------C
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLTE--------------G 124 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~---~~~p~s~D~~~l~~~L~~l~~--------------g 124 (954)
+.+|+|+|++||||||+|+.|++.+|+.++++|.+|+.... ....+..+.+.+.+.+..+.. +
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG 83 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence 47999999999999999999999999999999999886321 111222233334333322111 0
Q ss_pred Cccc-----------------cccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHH
Q 002197 125 KDTL-----------------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKV 187 (954)
Q Consensus 125 ~~i~-----------------~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri 187 (954)
..+. .|......... ........-+|++|-.... .+.+..++++||++|.+.+..|+.
T Consensus 84 ~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~----q~~ia~~~~~Vi~GR~~~~-~vl~~a~~~ifl~a~~e~R~~Rr~ 158 (225)
T PRK00023 84 EDVTDEIRTEEVGNAASKVAAIPEVREALVER----QRAFAREPGLVMDGRDIGT-VVFPDAELKIFLTASAEERAERRY 158 (225)
T ss_pred cchHHhhChHHHHHHHHHHcCCHHHHHHHHHH----HHHHhhCCCEEEEecChhe-EEeCCCCEEEEEECCHHHHHHHHH
Confidence 0000 00011000000 0011122358888875333 233448999999999999988887
Q ss_pred HhccCCc--cCHHHHHHh----hchhhhhccCCCcCccc-EEEECCC
Q 002197 188 QYDIGDS--CSLDSLIDS----IFPLFRKHIEPDLHHAQ-IRINNRF 227 (954)
Q Consensus 188 ~RD~~~r--~~~e~~~~~----v~p~~~~~Iep~~~~AD-iII~N~~ 227 (954)
++....+ .+.+.+.+. -.....+++.|....+| ++|+++.
T Consensus 159 ~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~ 205 (225)
T PRK00023 159 KELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSG 205 (225)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCC
Confidence 7753321 234333332 22233455677677776 7777764
No 123
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=98.82 E-value=1.2e-08 Score=106.81 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=96.7
Q ss_pred ccccccceeccccCCCCcccccccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEeeh----h---------HHH
Q 002197 256 NEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----M---------TLG 322 (954)
Q Consensus 256 ~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~---------~~~ 322 (954)
...+++.||+.|.++++..+.++ |||+.+++..+|+|+|.-..++. +.|.|+|+.| . +..
T Consensus 32 ~~~l~~~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~~~g~--~~R~E~e~~l~~~~~~l~~~~~~~~~~ 104 (197)
T cd07756 32 TRRLHNTYFDTPDLALRRAGIAL-----RVRREGGQWVQTLKTAGSVVGGL--HQRPEWEVPLPGPAPDLDLASILPDGE 104 (197)
T ss_pred eeeeeeeeeeCcChHHHhCCCEE-----EEEeeCCeEEEEEeeCCcCCCCc--ccceeEcccCCCCCcCcchhhcCCccc
Confidence 45688999999999999999999 99999999999999986443444 7999999999 1 556
Q ss_pred HHHhcC----CceeEEEEEEEEEEEeCC----EEEEEec--CCCCC--CCeEEEEec----ChhHHH----HHHHHcCCC
Q 002197 323 GLLDLG----YSVVASYKRASTYVVYGN----LSVSFET--IDTLD--ETFMVLRGT----NRKTVG----AEALRMGIN 382 (954)
Q Consensus 323 ~L~~LG----f~~~~~v~K~R~~~~~~~----~~i~lD~--v~~lG--~~FvEiE~~----~~~~v~----~~a~~Lgl~ 382 (954)
++.+++ +.|++++++.|+.|.+.. ++||+|. |..=+ .+.-|||.. +.+.+. .++...|+.
T Consensus 105 ~~~~l~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~l~~~~~l~ 184 (197)
T cd07756 105 LLEALAALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARRLAERLPLR 184 (197)
T ss_pred CHhhhhccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHHHHHhCCcc
Confidence 778884 999999999999999844 9999999 44212 347777755 444544 444556666
Q ss_pred CCccch
Q 002197 383 GPWITK 388 (954)
Q Consensus 383 ~~~~~~ 388 (954)
.....|
T Consensus 185 ~~~~SK 190 (197)
T cd07756 185 LSNRSK 190 (197)
T ss_pred CCCcCH
Confidence 654444
No 124
>PRK08356 hypothetical protein; Provisional
Probab=98.80 E-value=1.9e-08 Score=105.08 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=83.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc-cCCCCCccc----HH------HHHHH--HHhhhcCCccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-EGNDLDSID----FD------ALVQN--LQDLTEGKDTL 128 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~-~~~~p~s~D----~~------~l~~~--L~~l~~g~~i~ 128 (954)
.++|+|+|++||||||+|+.|++ +|+.+|++++..+... .......+. +. .+.+. +....-|.++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~- 82 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI- 82 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH-
Confidence 46799999999999999999975 8999999998654321 111111110 11 01100 0000001110
Q ss_pred cccchhhhhccccccccccCCCcEEEEEecccch--hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCcc---CHHHHHHh
Q 002197 129 IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC---SLDSLIDS 203 (954)
Q Consensus 129 ~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~--~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~---~~e~~~~~ 203 (954)
+....-... .....++++|.-... ..+......+|||++|.+++..|...|+..... +.+.+.+.
T Consensus 83 ---~~~~~~~~~-------~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~ 152 (195)
T PRK08356 83 ---LIRLAVDKK-------RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKF 152 (195)
T ss_pred ---HHHHHHHHh-------ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 000000000 112358999995554 234444578999999999999998888764432 33333222
Q ss_pred h---chhhhhccCCCcCcccEEEECC
Q 002197 204 I---FPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 204 v---~p~~~~~Iep~~~~ADiII~N~ 226 (954)
. ...+.. ....+.||++|.|+
T Consensus 153 ~~~~~~l~~~--~~~~~~aD~vI~N~ 176 (195)
T PRK08356 153 DEWEEKLYHT--TKLKDKADFVIVNE 176 (195)
T ss_pred HHHHHHhhhh--hhHHHhCcEEEECC
Confidence 1 111111 22257899999885
No 125
>PRK01184 hypothetical protein; Provisional
Probab=98.79 E-value=1.2e-08 Score=105.29 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=84.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHc--CCceeccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN--GRRTKVPIFDLE 594 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~--g~~v~~P~yD~~ 594 (954)
+++|+|+|++||||||+|+ +++.+|+.++++||..+..-.. .+...+. +.+.+....++. +.. .+...
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~-~~~~~~~----~~~g~~~~~~~~~~~~~----~~~~~ 70 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK-RGLEPTD----ENIGKVAIDLRKELGMD----AVAKR 70 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHH-cCCCCCc----HHHHHHHHHHHHHHChH----HHHHH
Confidence 3589999999999999987 6778999999999888753211 1111111 111111111111 000 00001
Q ss_pred ccccCCccceeeccCccEEEEEeecccc--hhhhhcCC---eEEEEEcChhHHHHHHHhcCccccccccch-hhHHhhhc
Q 002197 595 TGARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLD---LWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMTVF 668 (954)
Q Consensus 595 ~~dr~~~~~~~~~~~~dVVIvEG~~~~~--~~l~~~~D---~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~-~q~~~~v~ 668 (954)
.+... . ..+..++|++|+.... ..+++.++ ..|+++++.+.++.|...|+....+.+.+. ........
T Consensus 71 ~~~~i-----~-~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~ 144 (184)
T PRK01184 71 TVPKI-----R-EKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDEREL 144 (184)
T ss_pred HHHHH-----H-hcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHh
Confidence 11111 0 0235789999985432 34555555 899999999999999988863222222211 11111110
Q ss_pred chhhhhcccccCcccEEEcCCC
Q 002197 669 PMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 669 p~~~~~Iep~~~~ADivI~n~~ 690 (954)
+. . +.+....||++|+|+-
T Consensus 145 ~~-~--~~~~~~~ad~vI~N~~ 163 (184)
T PRK01184 145 SW-G--IGEVIALADYMIVNDS 163 (184)
T ss_pred cc-C--HHHHHHhcCEEEeCCC
Confidence 10 0 1223357999999864
No 126
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.77 E-value=2.7e-08 Score=122.27 Aligned_cols=183 Identities=12% Similarity=0.113 Sum_probs=114.6
Q ss_pred hhhhHHHHHHHHHHHHhcCC-CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc---cCCCCCcccHHHHHH
Q 002197 41 FDHGYYLLVKSIQELREKKG-GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQ 116 (954)
Q Consensus 41 ~d~~~~~lv~~i~~~~~~~~-~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~---~~~~p~s~D~~~l~~ 116 (954)
++..|..+.+.+..+..... +..+|.|.||+||||||+|+.|++.||..++++|.+|+.+. .....+..|.+.+.+
T Consensus 420 v~ksyP~F~~~l~~Lg~~~~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (661)
T PRK11860 420 VAKTFPDYFEALFSVAQADADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAA 499 (661)
T ss_pred eecCCCChHHHHHHhcCCcccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHH
Confidence 55577777777777764332 35689999999999999999999999999999999999641 122223335555555
Q ss_pred HHHhhh----------cCCccc-----------------cccchhhhhccccccccccCCCcEEEEEecccchhhhhcCC
Q 002197 117 NLQDLT----------EGKDTL-----------------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL 169 (954)
Q Consensus 117 ~L~~l~----------~g~~i~-----------------~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~ 169 (954)
.+..+. +++.+. .|.+........ .......-+|+||--... .+.+.+
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~q----r~~~~~~~~v~eGRdigt-vv~p~a 574 (661)
T PRK11860 500 LARGLPVRFEGDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLALQ----RSFRRLPGLVADGRDMGT-VIFPDA 574 (661)
T ss_pred HHhcCCeeecCCeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHH----HHHhhCCCEEEECCCCcc-EECCCC
Confidence 444322 111111 111111111110 001112247999877654 334569
Q ss_pred CEEEEEEcCHHHHHHHHHHhccCCc--cCHHHHHH----hhchhhhhccCCCcCccc-EEEECCCC
Q 002197 170 DIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLID----SIFPLFRKHIEPDLHHAQ-IRINNRFV 228 (954)
Q Consensus 170 D~~I~Vda~~~~rl~Rri~RD~~~r--~~~e~~~~----~v~p~~~~~Iep~~~~AD-iII~N~~~ 228 (954)
|++||++++.++|.+||........ .+.+++.+ +-.....+.+.|.+...| ++|||+..
T Consensus 575 ~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~ 640 (661)
T PRK11860 575 ALKVFLTASAEARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDL 640 (661)
T ss_pred CeEEEEECChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCC
Confidence 9999999999999999987543322 34544443 345566667888877666 45566643
No 127
>PRK04182 cytidylate kinase; Provisional
Probab=98.76 E-value=1.9e-08 Score=102.74 Aligned_cols=113 Identities=27% Similarity=0.354 Sum_probs=68.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~d 597 (954)
++|+|+|++||||||+|+.|++.+|..++++|++++..... .+. +...+.+. ++ ..|.++.....
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~-~g~------~~~~~~~~------~~--~~~~~~~~~~~ 65 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKE-RGM------SLEEFNKY------AE--EDPEIDKEIDR 65 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHH-cCC------CHHHHHHH------hh--cCchHHHHHHH
Confidence 37999999999999999999999999999999888752211 111 11111100 00 01111111111
Q ss_pred cCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcC
Q 002197 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
.. .........+|++|.+..+ .+.+..++.||+++|.+.+..|...|+
T Consensus 66 ~~----~~~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 66 RQ----LEIAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred HH----HHHHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhcc
Confidence 00 0011022456778876643 112337899999999999999988775
No 128
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.73 E-value=2e-08 Score=107.45 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=74.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh--ccccCCCCCcccHHHHHHHHHHHHcC-----Cceecc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIRNG-----RRTKVP 589 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~--~~~n~d~p~t~D~~lL~~~L~~L~~g-----~~v~~P 589 (954)
+.+|+|+|++||||||+|+.|++.+|+.+++.|++|+.... ...+.+ -.|.+.+.+.+..+... ....+.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVD---LEDEEALVALAAHLDISFESDPGGQRVF 80 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCC---CCCHHHHHHHHhcCCeEEecCCCcceEE
Confidence 57899999999999999999999999999999999986322 111111 12233333322221100 000000
Q ss_pred cccccccc-------------cCCc---cc-e----eeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHh
Q 002197 590 IFDLETGA-------------RSGF---KE-L----EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQ 648 (954)
Q Consensus 590 ~yD~~~~d-------------r~~~---~~-~----~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~ 648 (954)
..+..... .... .. + .......-+|++|.+.... +.+..+++||+++|.+.|..|+..
T Consensus 81 ~~~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~-vl~~a~~~ifl~a~~e~R~~Rr~~ 159 (225)
T PRK00023 81 LNGEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTV-VFPDAELKIFLTASAEERAERRYK 159 (225)
T ss_pred ECCcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheE-EeCCCCEEEEEECCHHHHHHHHHH
Confidence 00000000 0000 00 0 0011234689999985543 333379999999999999888776
Q ss_pred cC
Q 002197 649 RD 650 (954)
Q Consensus 649 RD 650 (954)
+.
T Consensus 160 ~~ 161 (225)
T PRK00023 160 EL 161 (225)
T ss_pred HH
Confidence 64
No 129
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=98.72 E-value=3.4e-08 Score=101.34 Aligned_cols=112 Identities=9% Similarity=-0.006 Sum_probs=84.1
Q ss_pred ccccccccceeccccCCCCcccccccCCceeEeee--CCeEEEEEcceeccCCCccccceeEEEeeh----hHH------
Q 002197 254 QGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL------ 321 (954)
Q Consensus 254 ~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~--~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~~~------ 321 (954)
.....+.+.||+.|.+ ...+.++ |||.. ++.+.+|+|+|.-. +.|.|+|+.| .+.
T Consensus 29 ~~~~~~~~~YfDT~d~--~l~~~~l-----rlR~r~~~~~~~~TlK~~~~~------~~r~E~e~~l~~~~~~~~~~~~~ 95 (174)
T cd07374 29 PETVQLRAIYFDTPDL--RLARAGL-----RLRRRTGGADAGWHLKLPGGI------SRRTEVRAPLGDAAAVAPLLLAA 95 (174)
T ss_pred ccceeeeeeEecCccc--hhhhCCc-----EEEEEcCCCccEEEEEccCCC------CCceEEEeecCCccCCcccccch
Confidence 3456788999999987 3344556 66644 55899999987532 5799999999 211
Q ss_pred ----HHHHhcCCceeEEEEEEEEEEEeC-----CEEEEEecCCC-------CCCCeEEEEecCh----hHHHHHHHHc
Q 002197 322 ----GGLLDLGYSVVASYKRASTYVVYG-----NLSVSFETIDT-------LDETFMVLRGTNR----KTVGAEALRM 379 (954)
Q Consensus 322 ----~~L~~LGf~~~~~v~K~R~~~~~~-----~~~i~lD~v~~-------lG~~FvEiE~~~~----~~v~~~a~~L 379 (954)
.++..+||.|++++.+.|++|.++ .++|+||.++. .++ ++|+|.++. ....+++..|
T Consensus 96 ~~~~~~~~~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~~-e~E~El~~~~~~~~~~~~~~~~l 172 (174)
T cd07374 96 ALVLAVTRGLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQY-WREVEVELPDGDEALLDALERRL 172 (174)
T ss_pred hheeeecCCCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcceE-EEEEEEEEcCCcHHHHHHHHHHh
Confidence 356779999999999999999987 49999999997 677 999998832 2444444443
No 130
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.72 E-value=2.3e-08 Score=101.36 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=36.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
+.+..|.|+|++||||||+|+.|++.+|+.+++.|.+...
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~ 41 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEA 41 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 4567999999999999999999999999999999997553
No 131
>PRK13949 shikimate kinase; Provisional
Probab=98.71 E-value=5.1e-08 Score=99.80 Aligned_cols=143 Identities=17% Similarity=0.114 Sum_probs=77.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCC---CcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL---DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p---~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
..|.|.|++||||||+++.|++.+|+.++++|.+.......... .....+.+++.-..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l----------------- 64 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNML----------------- 64 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHH-----------------
Confidence 45999999999999999999999999999999864421111000 0011111111111000
Q ss_pred ccccccccCCCcEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-----cCHHHHHHhhchhhhh
Q 002197 140 IGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-----CSLDSLIDSIFPLFRK 210 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~----~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-----~~~e~~~~~v~p~~~~ 210 (954)
.. . .....+||..|..... ..+....+++||+++|.+..+.|...+. ..+ .+.+.+++.+...+.+
T Consensus 65 --~~-l-~~~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~-~~RP~~~~~~~~~~~~~i~~l~~~ 139 (169)
T PRK13949 65 --HE-V-AEFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAK-QQRPLLKGKSDEELLDFIIEALEK 139 (169)
T ss_pred --HH-H-HhCCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHHHHH
Confidence 00 0 0112466666655442 2333457899999999999777654321 122 1223333222223333
Q ss_pred ccCCCcCcccEEEECCCC
Q 002197 211 HIEPDLHHAQIRINNRFV 228 (954)
Q Consensus 211 ~Iep~~~~ADiII~N~~~ 228 (954)
+..-+.+ ||++|+.+..
T Consensus 140 R~~~Y~~-ad~~id~~~~ 156 (169)
T PRK13949 140 RAPFYRQ-AKIIFNADKL 156 (169)
T ss_pred HHHHHHh-CCEEEECCCC
Confidence 2222234 8999987743
No 132
>PLN02200 adenylate kinase family protein
Probab=98.70 E-value=4.7e-08 Score=105.27 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=74.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
..+++|.|+|++||||||+|+.|++.+|+..|+++++.+....... .+...+...+ ..|..+............
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s---~~~~~i~~~~---~~G~~vp~e~~~~~l~~~ 114 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNS---EHGAMILNTI---KEGKIVPSEVTVKLIQKE 114 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccC---hhHHHHHHHH---HcCCCCcHHHHHHHHHHH
Confidence 3568999999999999999999999999999999987653222111 1122222222 233322211111111111
Q ss_pred ccccccccCCCcEEEEEecccchh-------hhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 140 IGSKVIKGASSGVVIVDGTYALDA-------RLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~~-------~l~~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.. .....-+|+||...-.. .+....|.+||+++++++.+.|...|..
T Consensus 115 l~-----~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 115 ME-----SSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred Hh-----cCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 11 11123589999644321 1123578999999999999999888853
No 133
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=98.64 E-value=1.1e-07 Score=99.55 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=98.1
Q ss_pred hhcccccccCCCCCCCCCcCCcc-eEEEEeeCCEEEEEeecccc---ccCcccccceeEEehh----------------h
Q 002197 728 QNFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLR---EGNFIIQPKVDFDISI----------------S 787 (954)
Q Consensus 728 ~~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~---d~~~~~~~~~~~~v~~----------------~ 787 (954)
....|.||..| +++++.++ |||+|+. .+.|+++++.. |+..+.+.+++.++.. .
T Consensus 30 ~~~~d~YfDtp----~~~l~~~~~~LRiR~~--~~~lk~~~~~~~~~~~~~~~~~E~~~~~~~~~~v~~~~~~~~~~~~~ 103 (196)
T cd07758 30 RTFHDTYYDTP----DNTLSLNDVWLRQRNG--QWELKIPPGGDPPTAGANTRYEELTGEAAIAAALRKLLGGALPSAGG 103 (196)
T ss_pred EEEeeEEEeCC----ChhHHhCCcEEEEECC--eEEEEecCCCCCCCCCCcceEEecccHHHHHHHHHHhcCCCCCcchh
Confidence 35679999998 67777776 9999974 78899998876 6778877777777621 1
Q ss_pred HHHHHHHhCceeeeeeeeeeEEeecC-cEEEEEecccCCCCceEEE----e--------cccHHHHHHHHhhcCCCCCc
Q 002197 788 TVAGLLNLGYQAVAYIEASAFIYQDG-KILIEVDHLQDAPSPYLQI----K--------GVDKEAVAAAGSTLKLDGSY 853 (954)
Q Consensus 788 ~~~~l~~lg~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~----~--------~~~~~~v~~~~~~l~~~~~~ 853 (954)
+...|.+|||++++.+.+.|..|..+ +++|++|+++ +|..|+|| . ...++.+.+++++||++..|
T Consensus 104 ~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg~~~~~ 181 (196)
T cd07758 104 LGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAKIDELISALMERYLW 181 (196)
T ss_pred HHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHHHHHHHHHhCCCccc
Confidence 34799999999999999999999999 9999999999 77569888 2 25677899999999998865
No 134
>PRK04040 adenylate kinase; Provisional
Probab=98.64 E-value=1.4e-07 Score=98.21 Aligned_cols=152 Identities=15% Similarity=0.123 Sum_probs=83.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh--CCeEEeccccccccc-cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L--g~~VIs~Dd~y~~~~-~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
|++|+|+|.+||||||+++.|++.+ ++.+++.+++++... ..+.. .+.+.+++ +... ....+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~--~~~d~~r~----l~~~---~~~~~~~---- 68 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLV--EHRDEMRK----LPPE---EQKELQR---- 68 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCC--CCHHHHhh----CChh---hhHHHHH----
Confidence 6799999999999999999999999 899999999876432 12211 12222221 1000 0000000
Q ss_pred cccccccccCCCcEEEEEecccch------h-----hhhc-CCCEEEEEEcCHHHHHHHHHH---hccCCccCHHHHHHh
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALD------A-----RLRS-LLDIRVAVVGGVHFSLISKVQ---YDIGDSCSLDSLIDS 203 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~------~-----~l~~-~~D~~I~Vda~~~~rl~Rri~---RD~~~r~~~e~~~~~ 203 (954)
..............+|++|.+.+. + -+.+ ..|..|+++++++..+.|++. |.... .+.+.+..+
T Consensus 69 ~a~~~i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~-es~e~I~~~ 147 (188)
T PRK04040 69 EAAERIAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDV-ETEEDIEEH 147 (188)
T ss_pred HHHHHHHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCC-CCHHHHHHH
Confidence 111111111234468889977432 1 1122 458999999999988888774 22111 233332222
Q ss_pred h--chhhhhccCCCcCcccEEEECCC
Q 002197 204 I--FPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 204 v--~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
+ ...+..++.......+.+|.|+.
T Consensus 148 ~~~a~~~a~~~a~~~g~~~~iI~N~d 173 (188)
T PRK04040 148 QEMNRAAAMAYAVLTGATVKIVENRE 173 (188)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 1 12222222333455788998884
No 135
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.63 E-value=6.7e-08 Score=102.91 Aligned_cols=127 Identities=19% Similarity=0.228 Sum_probs=76.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh--ccccCCCCCcccHHHHHHHHHHHH------c------
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIR------N------ 582 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~--~~~n~d~p~t~D~~lL~~~L~~L~------~------ 582 (954)
+++|+|+||+||||||+++.|++.+|..+++.|++|+.... ...+.+. .|-..+.+.+..+. .
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDL---TSEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCC---CCHHHHHHHHHhCCCEEecCCCceeEE
Confidence 46899999999999999999999999999999999975211 1111111 12222222222210 0
Q ss_pred -------------------CCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHH
Q 002197 583 -------------------GRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHL 643 (954)
Q Consensus 583 -------------------g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl 643 (954)
.....+|.+......+. ......+-+|+||.+.++.-+ +..|++||++++.+.|.
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~q-----r~~a~~~~~Vi~Gr~~~~~v~-~~a~~~ifl~a~~~~Ra 152 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQ-----QALAKNDGIIADGRDIGTVVF-PNAEVKIFLDASVEERA 152 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHH-----HHHhhcCCEEEEEcCcceEEe-CCCCEEEEEECCHHHHH
Confidence 00111222111111111 001122358999998765422 33889999999999999
Q ss_pred HHHHhcCcc
Q 002197 644 ISRVQRDKS 652 (954)
Q Consensus 644 ~Rri~RD~~ 652 (954)
.|+..|...
T Consensus 153 ~Rr~~~~~~ 161 (217)
T TIGR00017 153 KRRYKQLQI 161 (217)
T ss_pred HHHHHHHhc
Confidence 999888643
No 136
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.62 E-value=8.5e-08 Score=98.32 Aligned_cols=138 Identities=17% Similarity=0.133 Sum_probs=77.2
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccccccCCCC--CcccHHHHHHHHHhhhcCCcccccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDL--DSIDFDALVQNLQDLTEGKDTLIPM 131 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~~~~~~~p--~s~D~~~l~~~L~~l~~g~~i~~p~ 131 (954)
..++.+|.++|++||||||+|+.|++.++ +.+++.|.++..+...+.. ...+.......+...
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~---------- 73 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKF---------- 73 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHH----------
Confidence 34568999999999999999999999885 6677877775533222110 000000000111110
Q ss_pred chhhhhccccccccccCCCcEEEEEecccch---hhhhcC--CCEEEEEEcCHHHHHHHHHHhc--cCCccCHHHHHHhh
Q 002197 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL--LDIRVAVVGGVHFSLISKVQYD--IGDSCSLDSLIDSI 204 (954)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~~--~D~~I~Vda~~~~rl~Rri~RD--~~~r~~~e~~~~~v 204 (954)
. ......||++|...+. ...+.. -...+|++++.++...|..++. ......+...+...
T Consensus 74 -------------l-~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~ 139 (176)
T PRK05541 74 -------------L-ADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVD 139 (176)
T ss_pred -------------H-HhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCC
Confidence 0 1123578888877653 111111 1478999999998888754221 01112233333333
Q ss_pred chhhhhccCCCcCcccEEEECCC
Q 002197 205 FPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 205 ~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
.|.+.. .||++|+|+-
T Consensus 140 ~~~~~~-------~Ad~vI~~~~ 155 (176)
T PRK05541 140 IPFDEP-------KADLVIDNSC 155 (176)
T ss_pred CcccCC-------CCCEEEeCCC
Confidence 444432 4899999983
No 137
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=98.61 E-value=1.6e-07 Score=93.93 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=67.8
Q ss_pred cccccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEeeh---hHHHHHHhcCCceeEEEEEEEEEEEe-CCEEEE
Q 002197 275 EEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVY-GNLSVS 350 (954)
Q Consensus 275 deal~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~~~v~K~R~~~~~-~~~~i~ 350 (954)
++++ |||..++.+.|||||+. + ++|.|+|..| .+.++|. |.....++|.|..|.+ ++..++
T Consensus 32 ~~~v-----RvR~~~~~~~lT~K~~~----~---~~R~E~E~~I~~~~~~~ll~---~~~~~~I~K~R~~~~~~~~~~~~ 96 (146)
T cd07761 32 NPEV-----RIRSKGEKYILTVKSGG----G---LVREEIEIEIDKKEFEHLLE---KTEGNLIEKTRYLIPLEGGLLAE 96 (146)
T ss_pred CcEE-----EEEEECCEEEEEEEcCC----C---cceEEEEEeCCHHHHHHHHH---hCCCCeEEEEEEEEEeCCCcEEE
Confidence 4677 99999999999999874 5 6999999999 5556664 8888899999999999 999999
Q ss_pred EecCCCCC---CCeEEEEecCh
Q 002197 351 FETIDTLD---ETFMVLRGTNR 369 (954)
Q Consensus 351 lD~v~~lG---~~FvEiE~~~~ 369 (954)
||.++|.+ . |+|||-.+.
T Consensus 97 vD~~~g~~~gL~-~~EvE~~se 117 (146)
T cd07761 97 LDVFEGRLTGLV-YAEVEFPSE 117 (146)
T ss_pred EEEEcCCCCCeE-EEEEEcCCc
Confidence 99999987 5 888887643
No 138
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.61 E-value=2.5e-07 Score=114.80 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=97.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc-----cCCCCC--cccHHHHHHHHHhhhcCCcccc-----
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDLD--SIDFDALVQNLQDLTEGKDTLI----- 129 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~-----~~~~p~--s~D~~~l~~~L~~l~~g~~i~~----- 129 (954)
|.+|+|+||+||||||+|+.|++.||+.+++++.+|+... .....+ ..|.+.+...+..+..+..+.+
T Consensus 1 ~~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (712)
T PRK09518 1 MIIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPD 80 (712)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCC
Confidence 3589999999999999999999999999999999998632 111111 1233444444443322111110
Q ss_pred ------------------------------ccchhhhhccccccccccCC-------CcEEEEEecccchhhhhcCCCEE
Q 002197 130 ------------------------------PMFDYQQKNRIGSKVIKGAS-------SGVVIVDGTYALDARLRSLLDIR 172 (954)
Q Consensus 130 ------------------------------p~~d~~~~~~~~~~~~~~~~-------~~vVIvEG~~ll~~~l~~~~D~~ 172 (954)
|.+........ .......+ ..-+|+||--+.. -+.+.+|++
T Consensus 81 ~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~q-r~~~~~~~~~~~~~~~~~~v~eGRdigt-vv~p~a~~K 158 (712)
T PRK09518 81 SPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQ-RAYIAREASADSFSGGLGIVAEGRDITT-VVAPDAEVR 158 (712)
T ss_pred CcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHH-HHHHhhcCccccccccCcEEEecCccce-EEecCCCeE
Confidence 10100000000 00000111 1258999977764 334568999
Q ss_pred EEEEcCHHHHHHHHHHhccCCccCHHHH----HHhhchhhhhccCCCcCccc-EEEECCCC
Q 002197 173 VAVVGGVHFSLISKVQYDIGDSCSLDSL----IDSIFPLFRKHIEPDLHHAQ-IRINNRFV 228 (954)
Q Consensus 173 I~Vda~~~~rl~Rri~RD~~~r~~~e~~----~~~v~p~~~~~Iep~~~~AD-iII~N~~~ 228 (954)
+|++|+.++|..||..++.. .+.+++ .++-.... +.+.|.....| ++|+++..
T Consensus 159 ~~l~A~~~~Ra~Rr~~~~~~--~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~ 216 (712)
T PRK09518 159 ILLTAREEVRQARRSGQDRS--ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDL 216 (712)
T ss_pred EEEECCHHHHHHHHHHhhhc--CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCC
Confidence 99999999999999998764 334433 33334444 77888766655 55566533
No 139
>PRK03839 putative kinase; Provisional
Probab=98.58 E-value=2.5e-07 Score=95.16 Aligned_cols=97 Identities=21% Similarity=0.287 Sum_probs=64.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC---CCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN---DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~---~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~ 140 (954)
.|.|+|++||||||+|+.|++.+|++++++|++++...-.. ......+..+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------- 62 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEE------------------- 62 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHh-------------------
Confidence 58999999999999999999999999999999865321100 00111122221111110
Q ss_pred cccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 141 GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
.. ...+|++|.+... ...|.++|++++++....|...|.
T Consensus 63 ------~~-~~~vIidG~~~~l----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 63 ------FK-EKNVVLDGHLSHL----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ------cc-CCCEEEEeccccc----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 01 1236888865421 247899999999999988887764
No 140
>PRK06762 hypothetical protein; Provisional
Probab=98.58 E-value=2.2e-07 Score=94.17 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=71.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh--CCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L--g~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~ 594 (954)
|.+|+|+|++||||||+|+.|++.+ ++.+++.|.+.... ...++.++....+.+.+.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l---~~~~~~~~~~~~~~~~~~~~~~-------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM---LRVKDGPGNLSIDLIEQLVRYG-------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh---ccccCCCCCcCHHHHHHHHHHH--------------
Confidence 6789999999999999999999998 46678888776531 1122344445454444332221
Q ss_pred ccccCCccceeeccCccEEEEEeecccc------hhhhhcCC---eEEEEEcChhHHHHHHHhcCc
Q 002197 595 TGARSGFKELEVSEDCGVIIFEGVYALH------PEIRKSLD---LWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 595 ~~dr~~~~~~~~~~~~dVVIvEG~~~~~------~~l~~~~D---~~I~v~~~~d~rl~Rri~RD~ 651 (954)
.....++|+++.+.-. ..+....+ ..||+++|.++++.|...|..
T Consensus 65 ------------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 65 ------------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred ------------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence 1124677888886421 22333333 789999999999999988863
No 141
>PRK00625 shikimate kinase; Provisional
Probab=98.56 E-value=2.2e-07 Score=95.49 Aligned_cols=142 Identities=14% Similarity=0.107 Sum_probs=77.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
.|.|+|.+||||||+++.|++.+|++++++|.+-..........+ ...+ +.. .|.+. |...... ...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~--i~ei---f~~--~Ge~~----fr~~E~~-~l~- 68 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSS--PKEI---YQA--YGEEG----FCREEFL-ALT- 68 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCC--HHHH---HHH--HCHHH----HHHHHHH-HHH-
Confidence 489999999999999999999999999999987442221110000 0100 000 01100 0000000 000
Q ss_pred ccccCCCcEEEEEecccchhhhh---cCCCEEEEEEcCHHHHHHHHHHhccCCc----cCHHHHHHhhchhhhhccCCCc
Q 002197 144 VIKGASSGVVIVDGTYALDARLR---SLLDIRVAVVGGVHFSLISKVQYDIGDS----CSLDSLIDSIFPLFRKHIEPDL 216 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~~~l~---~~~D~~I~Vda~~~~rl~Rri~RD~~~r----~~~e~~~~~v~p~~~~~Iep~~ 216 (954)
... ....++...|.....+... .....+||++++.+....|...|..... ...++.+++-.|.|+
T Consensus 69 ~l~-~~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~------- 140 (173)
T PRK00625 69 SLP-VIPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMR------- 140 (173)
T ss_pred Hhc-cCCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHH-------
Confidence 001 1122333444444443222 2336899999999999999887765432 122233333344443
Q ss_pred CcccEEEECC
Q 002197 217 HHAQIRINNR 226 (954)
Q Consensus 217 ~~ADiII~N~ 226 (954)
+.||++|+.+
T Consensus 141 ~~ad~~i~~~ 150 (173)
T PRK00625 141 SIADYIFSLD 150 (173)
T ss_pred HHCCEEEeCC
Confidence 4799998766
No 142
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.55 E-value=1.3e-07 Score=95.94 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=34.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
.+..|.|.|++||||||+|+.|++.+|..+++.|++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~ 40 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIE 40 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHH
Confidence 46689999999999999999999999999999998865
No 143
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.55 E-value=3.9e-07 Score=93.74 Aligned_cols=118 Identities=16% Similarity=0.086 Sum_probs=70.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
+|.|.|++||||||+|+.|++.+|+.+|+++++.+.....+.+ ....+.+.+ ..|..+.-............
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~---~~~~~~~~~---~~g~~~~~~~~~~ll~~~~~-- 72 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSE---NGELIESMI---KNGKIVPSEVTVKLLKNAIQ-- 72 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCCh---HHHHHHHHH---HCCCcCCHHHHHHHHHHHHh--
Confidence 5899999999999999999999999999998875532221111 011112211 12322211111111111111
Q ss_pred ccccCCCcEEEEEecccch---hh---hh---cCCCEEEEEEcCHHHHHHHHHHhccC
Q 002197 144 VIKGASSGVVIVDGTYALD---AR---LR---SLLDIRVAVVGGVHFSLISKVQYDIG 192 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~---~~---l~---~~~D~~I~Vda~~~~rl~Rri~RD~~ 192 (954)
... ..-+|+||..--. .. +. ...|..||+++|.+..+.|...|...
T Consensus 73 --~~~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~ 127 (183)
T TIGR01359 73 --ADG-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS 127 (183)
T ss_pred --ccC-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc
Confidence 111 4568999974422 11 11 24789999999999999999988653
No 144
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=1.5e-07 Score=98.28 Aligned_cols=134 Identities=18% Similarity=0.238 Sum_probs=80.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHH-----------cCCc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIR-----------NGRR 585 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~-----------~g~~ 585 (954)
.++|+|.||+||||||+|+.|++.||..+++..-+|+.-...... ...+..|.+.+.+.+..+. +|+.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~-~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged 82 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALK-HGVDLDDEDALVALAKELDISFVNDDRVFLNGED 82 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHH-cCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence 389999999999999999999999999999999999973221110 1222344555555544321 1111
Q ss_pred eecccccccccccC------Cc-------cceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCcc
Q 002197 586 TKVPIFDLETGARS------GF-------KELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652 (954)
Q Consensus 586 v~~P~yD~~~~dr~------~~-------~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~ 652 (954)
+.-..=....+... +. .........+-+|+||-=.+. .+.+..+++||+++.++.|-+||......
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~~~ 161 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQLQA 161 (222)
T ss_pred hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 11000000000000 00 000001122458899977764 23455789999999999999999875433
No 145
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.53 E-value=1.8e-07 Score=93.13 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=33.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecccccccc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~ 100 (954)
|.|+|++||||||+|+.|++.+|+..++.|.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~ 37 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQR 37 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH
Confidence 789999999999999999999999999999986543
No 146
>PRK08356 hypothetical protein; Provisional
Probab=98.52 E-value=3.7e-07 Score=95.43 Aligned_cols=123 Identities=19% Similarity=0.151 Sum_probs=67.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchh---hhccccCCCCCc----ccHHHHHHHHHHH--HcCCce
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---QVKDFKYDDFSS----LDLSLLSKNISDI--RNGRRT 586 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~---~~~~~n~d~p~t----~D~~lL~~~L~~L--~~g~~v 586 (954)
..++|+|+||+||||||+|+.|++ +|+.+||+.+.++.. +..++.|..... .+...+.+.=.-+ .-|..+
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 346899999999999999999965 899999999876541 111111110000 0000111100000 001110
Q ss_pred ecccccccccccCCccceeeccCccEEEEEeecccc--hhhhhcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 587 ~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~--~~l~~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
.+ ...-+ .. .....++++|.-... ..+.......||++++.+.+..|...|+.
T Consensus 83 ~~----~~~~~-----~~---~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 83 LI----RLAVD-----KK---RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred HH----HHHHH-----Hh---ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCC
Confidence 00 00000 00 112358999995543 23444446899999999998888777764
No 147
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.51 E-value=6.1e-07 Score=93.36 Aligned_cols=159 Identities=9% Similarity=0.008 Sum_probs=83.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccC----CCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG----NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~----~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
.++++|.|+||+|||||||++.|.+.+.-...+...--+....+ .+.--.+.+.+.+. +..|.-+.+-.|+-.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~---i~~~~f~e~~~~~g~ 78 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKG---IADGEFLEWAEVHDN 78 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHH---HHcCCeEEEEEECCe
Confidence 35789999999999999999999876521111111111111111 00011122222222 223333333333221
Q ss_pred hhccccc-cccccCCCcEEEEEecccchhhhhcCC-C--EEEEEEcC-HHHHHHHHHHhccCCccCHHHHHHhhchhhhh
Q 002197 136 QKNRIGS-KVIKGASSGVVIVDGTYALDARLRSLL-D--IRVAVVGG-VHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (954)
Q Consensus 136 ~~~~~~~-~~~~~~~~~vVIvEG~~ll~~~l~~~~-D--~~I~Vda~-~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~ 210 (954)
.+..... .........++|++.-.-....+...+ + ..|||.+| .+....|+..|+......++..++.+.+....
T Consensus 79 ~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~ 158 (186)
T PRK14737 79 YYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDE 158 (186)
T ss_pred eecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 1111111 111123456777775433333444333 3 68999986 56677777777654445566666655554443
Q ss_pred ccCCCcCcccEEEECC
Q 002197 211 HIEPDLHHAQIRINNR 226 (954)
Q Consensus 211 ~Iep~~~~ADiII~N~ 226 (954)
...+|.||.|+
T Consensus 159 -----~~~~D~vI~N~ 169 (186)
T PRK14737 159 -----ANEFDYKIIND 169 (186)
T ss_pred -----hccCCEEEECc
Confidence 57899999998
No 148
>PRK04040 adenylate kinase; Provisional
Probab=98.48 E-value=2.3e-07 Score=96.69 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=35.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh--CCceeccccccch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L--g~~vIs~Ddfy~~ 554 (954)
|.+|+|+|++||||||+++.|++.+ +..+++.|++++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~ 41 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLE 41 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHH
Confidence 6789999999999999999999999 8999999999875
No 149
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.48 E-value=6.5e-07 Score=90.96 Aligned_cols=170 Identities=19% Similarity=0.331 Sum_probs=122.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccch--hh-------h----ccccCCCCCcccHHHHHHHH
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS--EQ-------V----KDFKYDDFSSLDLSLLSKNI 577 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~~--~~-------~----~~~n~d~p~t~D~~lL~~~L 577 (954)
+-.+|+|+|.||+|-||....+.+.+. +..|..|.|++- .+ . ....+-.|.+-|+..|.+.+
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f 83 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTF 83 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHH
Confidence 345899999999999999998877663 567889999764 11 1 12234578999999999998
Q ss_pred HHHHcCCceecccc----c------ccccccCCccceeeccCccEEEEEeecccc----hhhhhcCCeEEEEEcChhHHH
Q 002197 578 SDIRNGRRTKVPIF----D------LETGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHL 643 (954)
Q Consensus 578 ~~L~~g~~v~~P~y----D------~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl 643 (954)
...-+...-....| | ...|.-.+|.. ..++.|++..||.+.+- -.+...+|+.|-+..-..+..
T Consensus 84 ~eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~--lpe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEW 161 (289)
T COG3954 84 IEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQP--LPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEW 161 (289)
T ss_pred HHhcccCCcchhhhhhchhhcCccCCCCCCCCCccc--CCCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHH
Confidence 87644222222222 2 22233333322 24568999999999864 357889999999888888889
Q ss_pred HHHHhcCccccccccch-hhHHhhhcchhhhhcccccCcccEEEc
Q 002197 644 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (954)
Q Consensus 644 ~Rri~RD~~~rg~~~~~-~q~~~~v~p~~~~~Iep~~~~ADivI~ 687 (954)
...+.||..+||.+.+. .+-.-...+.|..||-|.-.+.|+.+.
T Consensus 162 IQK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThINFQ 206 (289)
T COG3954 162 IQKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQ 206 (289)
T ss_pred HHHHHhcccccCccHHHHHHHHHHhhhhHHhhcCcccccccccee
Confidence 99999999999998775 233344568899999999888887543
No 150
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.47 E-value=5.4e-07 Score=91.04 Aligned_cols=100 Identities=23% Similarity=0.286 Sum_probs=75.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc------ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV------GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~------~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~ 136 (954)
+.|+|||.||+||||+|+.|+ .+|..++++-+|.. +.++....-..|.+.++..+..+...
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~------------ 67 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLRE------------ 67 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhcc------------
Confidence 369999999999999999999 79999999988744 23333334457888888877754311
Q ss_pred hccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002197 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (954)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~ 192 (954)
.-.|+|+.+. .+.+.+|++|.+.+++..-..|...|-..
T Consensus 68 --------------~~~Ivd~H~~---hl~~~~dlVvVLR~~p~~L~~RLk~RGy~ 106 (180)
T COG1936 68 --------------GSGIVDSHLS---HLLPDCDLVVVLRADPEVLYERLKGRGYS 106 (180)
T ss_pred --------------CCeEeechhh---hcCCCCCEEEEEcCCHHHHHHHHHHcCCC
Confidence 2357787776 45558999999999999988888777543
No 151
>PRK03839 putative kinase; Provisional
Probab=98.47 E-value=6e-07 Score=92.40 Aligned_cols=100 Identities=21% Similarity=0.283 Sum_probs=65.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
.|.|.|++||||||+|+.|++.++..++++|+++....... .++..+...+..+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~------------------ 62 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGE-EKDDEMEIDFDKLAYFIEEE------------------ 62 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcc-cCChhhhcCHHHHHHHHHHh------------------
Confidence 58899999999999999999999999999999986421111 11122222333333322220
Q ss_pred CCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcC
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
.. ...+|++|.+... ...|..||++++.+....|...|.
T Consensus 63 --------~~-~~~vIidG~~~~l----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 63 --------FK-EKNVVLDGHLSHL----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred --------cc-CCCEEEEeccccc----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 00 1236778865322 136889999999999988876664
No 152
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.46 E-value=1.4e-06 Score=86.74 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=64.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc----cCCCC-CcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDL-DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~----~~~~p-~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
+|.|+|++||||||+|+.|++.+++.+++.|.++.... ..+.+ ..-+.+.....+.... +.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----- 66 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDAL---------LA----- 66 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHH---------HH-----
Confidence 47899999999999999999999999999999876411 11111 1111111111111000 00
Q ss_pred cccccccccCCCcEEEEEecccch---hhhhcCC----CEEEEEEcCHHHHHHHHHHhcc
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALD---ARLRSLL----DIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~~~----D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.. ......+|+++.+... ..+..++ -..+|+++|.++...|...|..
T Consensus 67 -----~l-~~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (150)
T cd02021 67 -----KL-ASAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKG 120 (150)
T ss_pred -----HH-HhCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhccc
Confidence 00 0112245667666544 2344442 2578999999999988888864
No 153
>PLN02200 adenylate kinase family protein
Probab=98.46 E-value=3.3e-07 Score=98.71 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=74.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (954)
.+.|++|.|.|++||||||+|+.|++.+|+..||++|..+.+-.. .+.+. ......+..|+.+.-.....
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~-------~s~~~---~~i~~~~~~G~~vp~e~~~~ 109 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS-------NSEHG---AMILNTIKEGKIVPSEVTVK 109 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhc-------cChhH---HHHHHHHHcCCCCcHHHHHH
Confidence 346789999999999999999999999999999999998753211 11111 12222233444322111100
Q ss_pred cccccCCccceeeccCccEEEEEeecccch---hh----hhcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 594 ETGARSGFKELEVSEDCGVIIFEGVYALHP---EI----RKSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 594 ~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~---~l----~~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
....+. .. ....-+|+||..-... .+ ....|..|+++++.++.+.|...|..
T Consensus 110 ~l~~~l-----~~-~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 110 LIQKEM-----ES-SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred HHHHHH-----hc-CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 001111 00 1123489999543221 12 12468999999999999999888753
No 154
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.45 E-value=1.1e-06 Score=90.57 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=71.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~ 141 (954)
..+|+|.|++||||||+|+.|++.+|..++++|++.+.......+ ....+...+. .+.. .|. ........
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~---~~~~--~~~--~~~~~~l~ 72 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSE---RGKQLQAIME---SGDL--VPL--DTVLDLLK 72 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH---HHHHHHHHHH---CCCC--CCH--HHHHHHHH
Confidence 468999999999999999999999999999999876532111111 1112222221 1211 111 00011111
Q ss_pred cccc-ccCCCcEEEEEecccch---hhh---hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 142 SKVI-KGASSGVVIVDGTYALD---ARL---RSLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 142 ~~~~-~~~~~~vVIvEG~~ll~---~~l---~~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.... .......+|+||..--. ..+ ....|..||+++|.+....|...|..
T Consensus 73 ~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 73 DAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred HHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 1010 12234578899964321 111 13478999999999999999988864
No 155
>PRK14528 adenylate kinase; Provisional
Probab=98.44 E-value=7.7e-07 Score=92.50 Aligned_cols=120 Identities=16% Similarity=0.058 Sum_probs=72.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l-~~g~~i~~p~~d~~~~~~~ 140 (954)
|..|.|.|++||||||+|+.|++.+|++++++|+..+.....+.+ +...+..+ ..|..+.-.........+.
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~-------~g~~~~~~~~~g~lvp~~~~~~~~~~~l 73 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTA-------MGIEAKRYMDAGDLVPDSVVIGIIKDRI 73 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCH-------HHHHHHHHHhCCCccCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999986542222111 11111221 1232221111111111111
Q ss_pred cccccccCCCcEEEEEecccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002197 141 GSKVIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYDIG 192 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll~-------~~l---~~~~D~~I~Vda~~~~rl~Rri~RD~~ 192 (954)
.. .....-+|+||.---. .-+ ....|.+|++++|.+..+.|...|...
T Consensus 74 ~~----~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~ 131 (186)
T PRK14528 74 RE----ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI 131 (186)
T ss_pred hC----cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc
Confidence 11 1122458999953211 111 135899999999999999999988543
No 156
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.44 E-value=1.6e-07 Score=92.30 Aligned_cols=114 Identities=24% Similarity=0.263 Sum_probs=67.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
+|.+.|++||||||+|+.|++.+++.+|+.|.++..+...+.+...+.......+..... .... .
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~ 65 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILN--------------AAIR-K 65 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHH--------------HHHH-H
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHH--------------HHHH-H
Confidence 689999999999999999999999999999998776554332222111111111111000 0000 0
Q ss_pred ccccCCCcEEEEEecccchh---hhhcC------CCEEEEEEcCHHHHHHHHHHhccCCc
Q 002197 144 VIKGASSGVVIVDGTYALDA---RLRSL------LDIRVAVVGGVHFSLISKVQYDIGDS 194 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~~---~l~~~------~D~~I~Vda~~~~rl~Rri~RD~~~r 194 (954)
.. ....-+|++..+.... .+... --..|+++++.++...|...|.....
T Consensus 66 ~l--~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~ 123 (143)
T PF13671_consen 66 AL--RNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD 123 (143)
T ss_dssp HH--HTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT
T ss_pred HH--HcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc
Confidence 00 1112366676666542 22211 22668999999999999988877653
No 157
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.44 E-value=8.4e-07 Score=91.89 Aligned_cols=117 Identities=20% Similarity=0.081 Sum_probs=70.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~ 144 (954)
|.|.|++||||||+|+.|++.+|+.++++|++.+....... .....+.+.+. .|..+...............
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~---~~~~~~~~~~~---~g~~~~~~~~~~l~~~~l~~-- 73 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGT---ELGKKAKEYID---SGKLVPDEIVIKLLKERLKK-- 73 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCC---hHHHHHHHHHH---cCCccCHHHHHHHHHHHHhc--
Confidence 89999999999999999999999999999997654322211 11111222221 12221111111111111111
Q ss_pred cccCCCcEEEEEecccch------hhhhc---CCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 145 IKGASSGVVIVDGTYALD------ARLRS---LLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 145 ~~~~~~~vVIvEG~~ll~------~~l~~---~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.....-+|++|..--. ..... ..+..|++++|.++.+.|...|..
T Consensus 74 --~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 74 --PDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred --ccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 1123457888853321 12222 678999999999999999999874
No 158
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.43 E-value=1.6e-06 Score=88.98 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=32.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYR 97 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y 97 (954)
+..|.|.|++||||||+++.|++.+|..++++|...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i 39 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI 39 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchH
Confidence 456999999999999999999999999999999853
No 159
>PRK14527 adenylate kinase; Provisional
Probab=98.43 E-value=7.1e-07 Score=92.93 Aligned_cols=121 Identities=21% Similarity=0.092 Sum_probs=72.3
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKN 138 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~-~g~~i~~p~~d~~~~~ 138 (954)
.++.+|.|.|++||||||+|+.|++.+|+..+++|+..+.....+.+ +...+..+. .|..+...........
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~l~~~ 76 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTE-------LGQRAKPIMEAGDLVPDELILALIRD 76 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcH-------HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 35688999999999999999999999999999999976543222111 111111211 1221111111111111
Q ss_pred cccccccccCCCcEEEEEecccchh---hh-------hcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALDA---RL-------RSLLDIRVAVVGGVHFSLISKVQYDIG 192 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~~---~l-------~~~~D~~I~Vda~~~~rl~Rri~RD~~ 192 (954)
... ..+..-+|+||..--.. .+ ...++.++|+++|.++++.|...|...
T Consensus 77 ~l~-----~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~ 135 (191)
T PRK14527 77 ELA-----GMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ 135 (191)
T ss_pred HHh-----cCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc
Confidence 111 11113488998543211 11 134778999999999999999988643
No 160
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.39 E-value=6.1e-07 Score=92.03 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~ 553 (954)
..++.+|.+.|++||||||+|+.|++.++ +.+++.|++..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 35678999999999999999999999885 56677776643
No 161
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.38 E-value=1e-06 Score=90.58 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=69.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
+|.|.|++||||||+|+.|++.+|+.+||+||..+..-.. .+. + -..+.+. +.+|..+..-.........
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~-----~~~-~-~~~~~~~---~~~g~~~~~~~~~~ll~~~ 70 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKS-----GSE-N-GELIESM---IKNGKIVPSEVTVKLLKNA 70 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhc-----CCh-H-HHHHHHH---HHCCCcCCHHHHHHHHHHH
Confidence 4788999999999999999999999999999998753210 000 0 0111111 2233322111100000010
Q ss_pred CCccceeeccCccEEEEEeecccc---hh---hh---hcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH---PE---IR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~---~~---l~---~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
. .... ..-+|++|..--. .. +. ...|..|+++++.+..+.|...|..
T Consensus 71 ~-----~~~~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 71 I-----QADG-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred H-----hccC-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 0 0011 3567899964321 11 11 1467899999999999999988864
No 162
>PRK13946 shikimate kinase; Provisional
Probab=98.36 E-value=1e-06 Score=91.40 Aligned_cols=145 Identities=14% Similarity=0.173 Sum_probs=77.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~ 140 (954)
.+..|.++|.+||||||+++.|++.||++++++|......... . ...+.... |.. ..+.... ..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~-~-----~~e~~~~~-----ge~-~~~~~e~----~~ 72 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARM-T-----IAEIFAAY-----GEP-EFRDLER----RV 72 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCC-C-----HHHHHHHH-----CHH-HHHHHHH----HH
Confidence 4567999999999999999999999999999999853322111 0 01111000 100 0000000 00
Q ss_pred cccccccCCCcEEEEEeccc--chhh--hhcCCCEEEEEEcCHHHHHHHHHHhccCC---ccCHHHHHHhhchhhhhccC
Q 002197 141 GSKVIKGASSGVVIVDGTYA--LDAR--LRSLLDIRVAVVGGVHFSLISKVQYDIGD---SCSLDSLIDSIFPLFRKHIE 213 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l--l~~~--l~~~~D~~I~Vda~~~~rl~Rri~RD~~~---r~~~e~~~~~v~p~~~~~Ie 213 (954)
..... .....||..|... .... +....++.||+++|.+..+.|...|.... ..++...++.+......+
T Consensus 73 l~~l~--~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~-- 148 (184)
T PRK13946 73 IARLL--KGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPV-- 148 (184)
T ss_pred HHHHH--hcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHH--
Confidence 00011 1123566655433 2221 11235789999999999999887765431 123333333332222111
Q ss_pred CCcCcccEEEECCC
Q 002197 214 PDLHHAQIRINNRF 227 (954)
Q Consensus 214 p~~~~ADiII~N~~ 227 (954)
-..+|++|+.+.
T Consensus 149 --y~~~dl~i~~~~ 160 (184)
T PRK13946 149 --YAEADLTVASRD 160 (184)
T ss_pred --HHhCCEEEECCC
Confidence 124799986653
No 163
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.36 E-value=2e-06 Score=89.16 Aligned_cols=122 Identities=17% Similarity=0.073 Sum_probs=64.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCC--CcccHHHHHHHHHhhhcCCccccccc---hhhhh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL--DSIDFDALVQNLQDLTEGKDTLIPMF---DYQQK 137 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p--~s~D~~~l~~~L~~l~~g~~i~~p~~---d~~~~ 137 (954)
.+|+|.||+||||||+++.|+..++..++..|............ -.+..+.+...+. .+.-...-.+ .+.+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~yg~~ 79 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAG---QNLFALSWHANGLYYGVG 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHH---CCchhhHHHHhCCccCCc
Confidence 47899999999999999999998877777777653321111101 1112222222111 1100000000 00011
Q ss_pred ccccccccccCCCcEEEEEecccchhhhhcC---CCEEEEEEcCHHHHHHHHHHhc
Q 002197 138 NRIGSKVIKGASSGVVIVDGTYALDARLRSL---LDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~---~D~~I~Vda~~~~rl~Rri~RD 190 (954)
..+ ...+ .....||++|.......+... .-.+||+++|.++...|...|+
T Consensus 80 ~~~-~~~l--~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 80 IEI-DLWL--HAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred HHH-HHHH--hCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 111 1111 223456677776554333332 2357899999999999988875
No 164
>PRK00625 shikimate kinase; Provisional
Probab=98.36 E-value=1.1e-06 Score=90.27 Aligned_cols=137 Identities=10% Similarity=0.075 Sum_probs=76.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCC-------CcccHHHHH-HHHHHHHcCCceeccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF-------SSLDLSLLS-KNISDIRNGRRTKVPI 590 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p-------~t~D~~lL~-~~L~~L~~g~~v~~P~ 590 (954)
.|.++|.+||||||+++.|++.+|..++++|++-........ +..+ +.--+..+. +.+..+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~-~~~i~eif~~~Ge~~fr~~E~~~l~~l---------- 70 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL-YSSPKEIYQAYGEEGFCREEFLALTSL---------- 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC-CCCHHHHHHHHCHHHHHHHHHHHHHHh----------
Confidence 478899999999999999999999999999988653211110 0000 000000000 011110
Q ss_pred ccccccccCCccceeeccCccEEEEEeecccchhhhhcC---CeEEEEEcChhHHHHHHHhcCccccccccch-hhHHhh
Q 002197 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMT 666 (954)
Q Consensus 591 yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~---D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~-~q~~~~ 666 (954)
.....||...|.....++....+ ...||++++.+....|...|........... .+.+..
T Consensus 71 ----------------~~~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~ 134 (173)
T PRK00625 71 ----------------PVIPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQ 134 (173)
T ss_pred ----------------ccCCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHH
Confidence 01122444555555554433333 5789999999998888877754322211111 233334
Q ss_pred hcchhhhhcccccCcccEEEcCC
Q 002197 667 VFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 667 v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
..|.|++ .||++|+.+
T Consensus 135 R~~~Y~~-------~ad~~i~~~ 150 (173)
T PRK00625 135 RIDRMRS-------IADYIFSLD 150 (173)
T ss_pred HHHHHHH-------HCCEEEeCC
Confidence 4455544 489888644
No 165
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.36 E-value=5.1e-07 Score=92.00 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=62.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCC---CcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL---DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p---~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
..|.|+|.+||||||+|+.|++.+|+++++.|.+.......... ...+.+.+++.-....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~----------------- 65 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAAL----------------- 65 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHH-----------------
Confidence 35888999999999999999999999999999975432211100 0111111111111000
Q ss_pred ccccccccCCCcEEEEE-ecccchh---hhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 140 IGSKVIKGASSGVVIVD-GTYALDA---RLRSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvE-G~~ll~~---~l~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
. .. .....||.- |..++.. .+....++++|+++|++..+.|...|.
T Consensus 66 --~-~~--~~~~~vi~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~ 115 (171)
T PRK03731 66 --E-AV--TAPSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANP 115 (171)
T ss_pred --H-Hh--cCCCeEEECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHcccc
Confidence 0 00 112234433 3344443 222346799999999999998887664
No 166
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.36 E-value=2.3e-06 Score=95.95 Aligned_cols=41 Identities=20% Similarity=0.382 Sum_probs=36.0
Q ss_pred hcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccc
Q 002197 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYR 97 (954)
Q Consensus 57 ~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y 97 (954)
.+.++...|+|+|.+||||||+++.|++.+|++++++|...
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i 168 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREI 168 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHH
Confidence 34555678999999999999999999999999999999753
No 167
>PRK13947 shikimate kinase; Provisional
Probab=98.34 E-value=1.8e-06 Score=87.82 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=33.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
.-|.|+|++||||||+|+.|++.||+++++.|.+...
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~ 38 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEK 38 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhh
Confidence 3599999999999999999999999999999997543
No 168
>PRK02496 adk adenylate kinase; Provisional
Probab=98.34 E-value=1.3e-06 Score=90.24 Aligned_cols=137 Identities=14% Similarity=0.042 Sum_probs=76.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~ 141 (954)
|+.|.|.|++||||||+|+.|++.+|+.++++|+..+.....+.+. .......+ ..|..+.-.........+..
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~---g~~~~~~~---~~g~~~~~~~~~~~l~~~l~ 74 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPL---GIKAQGYM---DKGELVPDQLVLDLVQERLQ 74 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChh---HHHHHHHH---HCCCccCHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999998755322111110 01111111 12221111111111111111
Q ss_pred ccccccCCCcEEEEEecccc-------hh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhhh
Q 002197 142 SKVIKGASSGVVIVDGTYAL-------DA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (954)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~ll-------~~---~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~ 210 (954)
. .....-+|+||.--- .. .+....|..++++++.+....|...|... .+.++++++.+..|.+
T Consensus 75 ~----~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~--dd~~~~~~~r~~~y~~ 147 (184)
T PRK02496 75 Q----PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK--DDTEEVIRRRLEVYRE 147 (184)
T ss_pred C----cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH
Confidence 0 111235888997421 11 12235789999999999999998887432 2223344444444444
No 169
>PRK14531 adenylate kinase; Provisional
Probab=98.34 E-value=2e-06 Score=89.09 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=69.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhcccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIG 141 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l-~~g~~i~~p~~d~~~~~~~~ 141 (954)
..|.|.|++||||||+|+.|++.+|+..|+++++.+.-...+.+ +...+... ..|..+.-............
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~-------~~~~~~~~~~~G~~v~d~l~~~~~~~~l~ 75 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSA-------LGQEAEAVMNRGELVSDALVLAIVESQLK 75 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCH-------HHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999999999999998876532211111 11112221 22322111111111111110
Q ss_pred ccccccCCCcEEEEEecccchh---hh-------hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 142 SKVIKGASSGVVIVDGTYALDA---RL-------RSLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~ll~~---~l-------~~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.....-+|+||...-.. .+ ...+|.++++++|+++...|...|..
T Consensus 76 -----~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r 130 (183)
T PRK14531 76 -----ALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR 130 (183)
T ss_pred -----hccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence 00123467798765431 11 12468899999999999999888743
No 170
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.34 E-value=2.7e-07 Score=88.39 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=59.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEec---cccccccc---cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISM---ENYRVGVD---EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~---Dd~y~~~~---~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
|+|+|++||||||+|+.|++.++..+.+. ++...... ........+.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR------------ 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH------------
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc------------
Confidence 79999999999999999999873111111 11100000 0112223333333322222211000
Q ss_pred cccccccccCCCcEEEEEecccchhhhhcCCCEE-EEEEcCHHHHHHHHHHhccCCc
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIR-VAVVGGVHFSLISKVQYDIGDS 194 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~-I~Vda~~~~rl~Rri~RD~~~r 194 (954)
.......+|++|...... .....+.. |||+|+++++.+|...|.....
T Consensus 69 -------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~~ 117 (129)
T PF13238_consen 69 -------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRKEE 117 (129)
T ss_dssp -------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTSCH
T ss_pred -------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCCCC
Confidence 122345778899887652 11222233 9999999999999998876543
No 171
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.32 E-value=1.1e-06 Score=76.50 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=45.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~ 140 (954)
+|+|+|++||||||+++.|++.+ ++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 48999999999999999999875 1222211
Q ss_pred cccccccCCCcEEEEEecccchh----hhhcCCCEEEEEEc
Q 002197 141 GSKVIKGASSGVVIVDGTYALDA----RLRSLLDIRVAVVG 177 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll~~----~l~~~~D~~I~Vda 177 (954)
++|+||.+.+.. ...+.+|+.||+++
T Consensus 34 -----------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 -----------IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred -----------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 899999999985 57789999999997
No 172
>PRK14532 adenylate kinase; Provisional
Probab=98.31 E-value=3.1e-06 Score=87.62 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=68.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~ 144 (954)
|.|.|++||||||+|+.|++.+|+.+|++|+..+.....+.+ --..+.+.+. .|..+.-...........
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~---~~~~~~~~~~---~g~~~~~~~~~~~~~~~~---- 72 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSE---LGQRVKGIMD---RGELVSDEIVIALIEERL---- 72 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCH---HHHHHHHHHH---CCCccCHHHHHHHHHHHH----
Confidence 788999999999999999999999999999976643221111 0011222221 233221111111111111
Q ss_pred cccCCCcEEEEEecccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 145 IKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 145 ~~~~~~~vVIvEG~~ll~-------~~l---~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
.......-+|++|..--. .-+ ....|..|++++|.++.+.|...|.
T Consensus 73 ~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 73 PEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 111223467889854322 111 1346899999999999998888774
No 173
>PRK14530 adenylate kinase; Provisional
Probab=98.30 E-value=2.6e-06 Score=90.50 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=67.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC--CCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN--DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~--~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~ 141 (954)
.|+|.|++||||||+|+.|++.+|+.+|++|++.+.....+ ..+. ........ +..|..+.-...........
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~-~~~~~~~~---~~~g~~~~d~~~~~~l~~~l- 79 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDT-EYDTPGEY---MDAGELVPDAVVNEIVEEAL- 79 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccc-hHHHHHHH---HHcCCCCCHHHHHHHHHHHH-
Confidence 58999999999999999999999999999999866422110 0010 01111111 12232211111111111111
Q ss_pred ccccccCCCcEEEEEecccch---hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 142 SKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~ll~---~~l~--~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
....-+|++|...-. ..+. ...|.+||++++.++.+.|...|.
T Consensus 80 ------~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 80 ------SDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred ------hcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 112357889843322 1221 247999999999999998887774
No 174
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.29 E-value=5.3e-07 Score=86.44 Aligned_cols=110 Identities=19% Similarity=0.271 Sum_probs=61.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh----hccccCCCCCcccHHHHHHHHHHHHcCCceecccccccc
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~----~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (954)
|+|+|++||||||+|+.|++.++..+ .|.++.... ............+.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDII--RDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR---------- 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHH--HHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH----------
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHH--HHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc----------
Confidence 78999999999999999999873211 111111100 00011223344555554444444332111
Q ss_pred cccCCccceeeccCccEEEEEeecccchhhhhcCCeE-EEEEcChhHHHHHHHhcCcc
Q 002197 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLW-IAVVGGVHSHLISRVQRDKS 652 (954)
Q Consensus 596 ~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~-I~v~~~~d~rl~Rri~RD~~ 652 (954)
.......+|++|++.... .....+.. |+++++.+++..|...|...
T Consensus 69 ----------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 69 ----------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp ----------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred ----------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 123457789999997642 11122223 99999999999999887643
No 175
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.28 E-value=2.5e-06 Score=95.71 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=34.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
.++...|+++|++||||||+++.|++.+|+.++++|....
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~ 169 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIE 169 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHH
Confidence 3456689999999999999999999999999999986643
No 176
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.27 E-value=3.3e-06 Score=89.63 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=68.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
.|.|.|++||||||+|+.|++.+|+.+|++++..+.......+ ....+.+.+ ..|..+.-.........+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~---~~~~~~~~~---~~g~~~p~~~~~~~i~~~l~~- 74 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTE---LGKEAKSYM---DAGELVPDEIVIGLVKERLAQ- 74 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccch---HHHHHHHHH---HcCCcCCHHHHHHHHHHHHhc-
Confidence 4899999999999999999999999999999876642222111 001111111 122221111111111111111
Q ss_pred ccccCCCcEEEEEecccch---hhh----h---cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 144 VIKGASSGVVIVDGTYALD---ARL----R---SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~---~~l----~---~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
.....-+|+||.---. ..+ . ...|..|+++++.+..+.|...|.
T Consensus 75 ---~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 75 ---PDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred ---cCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 1112258889953222 112 1 246899999999999999988885
No 177
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.26 E-value=2.1e-06 Score=90.74 Aligned_cols=117 Identities=16% Similarity=0.087 Sum_probs=70.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~ 144 (954)
|.|.|++||||||+|+.|++.+|+.+|++++..+.......+ ....+.+.+ ..|..+.-.........+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~---~~~~~~~~~---~~g~~vp~~~~~~l~~~~i~~~- 74 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTP---LGKKAKEYM---EKGELVPDEIVNQLVKERLTQN- 74 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccH---HHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcC-
Confidence 789999999999999999999999999999976643222211 011111111 2233222111222122221110
Q ss_pred cccCCCcEEEEEecccch---hhhh---c-CCCEEEEEEcCHHHHHHHHHHhc
Q 002197 145 IKGASSGVVIVDGTYALD---ARLR---S-LLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 145 ~~~~~~~vVIvEG~~ll~---~~l~---~-~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
.....-+|+||..--. ..+. . ..|.+|++++|.+..+.|...|.
T Consensus 75 --~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 75 --QDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred --cccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 1113468999953322 1222 2 47899999999999999988874
No 178
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.25 E-value=7.9e-06 Score=83.89 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=60.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCe--EEecccccc-ccccCC-CCCcccHHHHHHHHHhhhcCCccccccc---hhh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRV-GVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMF---DYQ 135 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~--VIs~Dd~y~-~~~~~~-~p~s~D~~~l~~~L~~l~~g~~i~~p~~---d~~ 135 (954)
.+|+|+|++||||||+++.|+..++.. +.....+.. .....+ .....+.+.+..... .+.-..+..+ ...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHRED---GGAFALSWQAHGLSYG 78 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHH---CCCEEEEEeecCcccc
Confidence 378999999999999999999987642 211111111 111111 111122222222111 1111111111 000
Q ss_pred hhccccccccccCCCcEEEEEecccchhhhhcCC--CEEEEEEcCHHHHHHHHHHhc
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL--DIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~--D~~I~Vda~~~~rl~Rri~RD 190 (954)
...... ........+|++|.......++..+ -..||++++.+.+..|...|.
T Consensus 79 ~~~~i~---~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 79 IPAEID---QWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred ChHHHH---HHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence 000000 0112345678887755444433322 278999999999999988875
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.24 E-value=2.8e-06 Score=105.61 Aligned_cols=134 Identities=19% Similarity=0.284 Sum_probs=81.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhc--cccCC-CCCcccHHHHHHHHHHHHcCCceec---ccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYD-DFSSLDLSLLSKNISDIRNGRRTKV---PIF 591 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~--~~n~d-~p~t~D~~lL~~~L~~L~~g~~v~~---P~y 591 (954)
.+|+|+||+||||||+|+.|++.+|..+++.+.+|+..... ..+.+ +-...|.+.+.+.+..+..+..+.+ |..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 37999999999999999999999999999999999973321 11111 0112344555665555543322222 100
Q ss_pred --------cccc-------c-----------ccCC---c-cceeeccC-------ccEEEEEeecccchhhhhcCCeEEE
Q 002197 592 --------DLET-------G-----------ARSG---F-KELEVSED-------CGVIIFEGVYALHPEIRKSLDLWIA 634 (954)
Q Consensus 592 --------D~~~-------~-----------dr~~---~-~~~~~~~~-------~dVVIvEG~~~~~~~l~~~~D~~I~ 634 (954)
|-.. + -|.. . .......+ ..-+|+||--++.- +.+..|+++|
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigtv-v~p~a~~K~~ 160 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITTV-VAPDAEVRIL 160 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccceE-EecCCCeEEE
Confidence 0000 0 0000 0 00000011 12589999998762 2244799999
Q ss_pred EEcChhHHHHHHHhcCcc
Q 002197 635 VVGGVHSHLISRVQRDKS 652 (954)
Q Consensus 635 v~~~~d~rl~Rri~RD~~ 652 (954)
++++.+.|..||..+...
T Consensus 161 l~A~~~~Ra~Rr~~~~~~ 178 (712)
T PRK09518 161 LTAREEVRQARRSGQDRS 178 (712)
T ss_pred EECCHHHHHHHHHHhhhc
Confidence 999999999999988653
No 180
>PRK14527 adenylate kinase; Provisional
Probab=98.23 E-value=3.4e-06 Score=87.84 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=70.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHH-HHcCCceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL 593 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~ 593 (954)
.++.+|.|.||+||||||+|+.|++.+|+..+++|+..+..... ++ + +.+.+.. +..|..+.......
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~-------~~---~-~~~~~~~~~~~g~~~p~~~~~~ 72 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVAR-------GT---E-LGQRAKPIMEAGDLVPDELILA 72 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhc-------Cc---H-HHHHHHHHHHcCCCCcHHHHHH
Confidence 45778999999999999999999999999999999998753211 00 0 1111111 22232211110000
Q ss_pred cccccCCccceeeccCccEEEEEeecccch---hhh-------hcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 594 ETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 594 ~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
...++. . ..+..-+|++|..--.. .+. ..++..+|++++.++.+.|...|..
T Consensus 73 l~~~~l-----~-~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 73 LIRDEL-----A-GMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred HHHHHH-----h-cCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 001111 0 01123488898543211 111 2367789999999999999988853
No 181
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.23 E-value=1.8e-06 Score=106.28 Aligned_cols=124 Identities=14% Similarity=0.146 Sum_probs=77.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh--ccccCCCCCcccHHHHHHHHHHHHc----------CC
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIRN----------GR 584 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~--~~~n~d~p~t~D~~lL~~~L~~L~~----------g~ 584 (954)
..+|.|.||+||||||+|+.|++.||..+++.|++|+.-.. .+.+. +..|.+.+.+.+..+.- |+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGV---ALDDEAAIAALARGLPVRFEGDRIWLGGE 518 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCc---CCCCHHHHHHHHhcCCeeecCCeEEECCe
Confidence 46899999999999999999999999999999999997321 11111 12244455554443221 10
Q ss_pred ce-----------------ecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHH
Q 002197 585 RT-----------------KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV 647 (954)
Q Consensus 585 ~v-----------------~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri 647 (954)
.+ .+|.++.....+. .. .....-+|+||--.+.- +.+..|++||++++.+.|..||.
T Consensus 519 ~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~q----r~-~~~~~~~v~eGRdigtv-v~p~a~~kifl~a~~~~Ra~Rr~ 592 (661)
T PRK11860 519 DVTDAIRTEAAGMGASRVSALPAVRAALLALQ----RS-FRRLPGLVADGRDMGTV-IFPDAALKVFLTASAEARAERRY 592 (661)
T ss_pred EchhhhCcHHHHHHHHHHhCCHHHHHHHHHHH----HH-HhhCCCEEEECCCCccE-ECCCCCeEEEEECChhHHHHHHH
Confidence 00 1111111110000 00 01123479999888762 23448999999999999999998
Q ss_pred hc
Q 002197 648 QR 649 (954)
Q Consensus 648 ~R 649 (954)
..
T Consensus 593 ~~ 594 (661)
T PRK11860 593 KQ 594 (661)
T ss_pred HH
Confidence 75
No 182
>PRK13949 shikimate kinase; Provisional
Probab=98.23 E-value=3.1e-06 Score=86.74 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=32.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
-|.|.|++||||||+++.|++.+++.++++|++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~ 38 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIEN 38 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHH
Confidence 478899999999999999999999999999987653
No 183
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.22 E-value=5.5e-06 Score=85.22 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=68.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccc---ccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI---FDL 593 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~---yD~ 593 (954)
..+|+|.|++||||||+|+.|++.+|...+++|++.+..... ..+ ....+...+ .+|.. .|. +..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~----~~~---~~~~~~~~~---~~~~~--~~~~~~~~~ 70 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS----GSE---RGKQLQAIM---ESGDL--VPLDTVLDL 70 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc----CCH---HHHHHHHHH---HCCCC--CCHHHHHHH
Confidence 458899999999999999999999999999999987642110 000 001111111 11211 111 000
Q ss_pred cccccCCccceeeccCccEEEEEeecccc---hhhh---hcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 594 ETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 594 ~~~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
..+.. ........-+|++|..-.. ..+. ...|..||++++.+..+.|...|..
T Consensus 71 -l~~~~----~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 71 -LKDAM----VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred -HHHHH----HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 00000 0001224567889864321 1111 2468999999999999999887763
No 184
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.21 E-value=3.2e-06 Score=85.21 Aligned_cols=104 Identities=23% Similarity=0.281 Sum_probs=61.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
++.+|-|||.+||||||+|+.|.+.| | +.+++.|.+..++...-..+..|+......+..+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~------------ 68 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAK------------ 68 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHH------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHH------------
Confidence 46899999999999999999999988 3 667888888776544322333333333222222110
Q ss_pred hhccccccccccCCCcEEEEEecccch---hhhhcCCC----EEEEEEcCHHHHHHH
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD----IRVAVVGGVHFSLIS 185 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~~~D----~~I~Vda~~~~rl~R 185 (954)
.-.....++|+..+-.+. ...+..+. +-|||+||.+++.+|
T Consensus 69 ---------ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 69 ---------LLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp ---------HHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred ---------HHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 011223467777666665 23343333 679999999998665
No 185
>PRK13948 shikimate kinase; Provisional
Probab=98.21 E-value=1.1e-05 Score=83.74 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=35.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~ 98 (954)
..+..|.++|.+||||||+++.|++.+|..+||+|.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie 46 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIE 46 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHH
Confidence 345789999999999999999999999999999998654
No 186
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.20 E-value=3.5e-06 Score=83.86 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=32.3
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
|.|.|++||||||+|+.|++.+|...++.|++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~ 36 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQ 36 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHH
Confidence 67899999999999999999999999999988653
No 187
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2e-07 Score=103.02 Aligned_cols=173 Identities=20% Similarity=0.215 Sum_probs=96.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc--ccccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~--y~~~~~~~-~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
.+.+|.|.||+|||||.+|-.||+.+|++||++|+. |++++-+. .|..-+++...++|-++++-.+ .+...++...
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e-~ysa~~f~~~ 80 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE-SYSAAEFQRD 80 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccc-cccHHHHHHH
Confidence 467999999999999999999999999999999994 99887553 2333333333444444333222 2222222222
Q ss_pred ccccccccccCCCcEEEEEecccchhhhh-cCCCEEEEEEcCHHHHHHHHHHhccCCcc--CHHHHHHhhchhhhhccCC
Q 002197 138 NRIGSKVIKGASSGVVIVDGTYALDARLR-SLLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEP 214 (954)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~ll~~~l~-~~~D~~I~Vda~~~~rl~Rri~RD~~~r~--~~e~~~~~v~p~~~~~Iep 214 (954)
....-..+.....-.++|.|..++...+. .+.+.. .++.+ .++++........ ..........|
T Consensus 81 a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p---~~~~~--~r~~~~~~~~~~g~~~L~~~L~~~Dp-------- 147 (308)
T COG0324 81 ALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLP---EADPE--VRRRLEAELAELGNDALHAELKKIDP-------- 147 (308)
T ss_pred HHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCC---CCCHH--HHHHHHHHHHhcCHHHHHHHHHhhCH--------
Confidence 22111122223335788899999875443 333332 12333 3333221111111 11122223333
Q ss_pred CcCcccEEEECCCCCchhhhhhhhcccCc-CCCCCcccccccc
Q 002197 215 DLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQGN 256 (954)
Q Consensus 215 ~~~~ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~~~~ 256 (954)
..|.-|-+|| +....++.+. .++|.+.+.+...
T Consensus 148 --~~a~~i~pnD-------~~Ri~RALEv~~~tGk~~s~~~~~ 181 (308)
T COG0324 148 --EAAAKIHPND-------PQRIIRALEVYYLTGKPISELQKR 181 (308)
T ss_pred --HHHHhcCCCc-------hhHHHHHHHHHHHHCCCHHHHhhc
Confidence 3344555677 7777888776 8888877665433
No 188
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.19 E-value=3.1e-07 Score=101.90 Aligned_cols=172 Identities=13% Similarity=0.006 Sum_probs=93.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc--cccccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd--~y~~~~~~~-~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
+.+|.|+||+|||||.||-.||+. +..||++|+ +|++++-+. .|...+...+.++|-+.....+ .+...+|....
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e-~~sv~~f~~~a 81 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIK-EYNLGIFYKEA 81 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCC-ceeHHHHHHHH
Confidence 458999999999999999999998 679999999 499887653 3444444445555555544322 12222222221
Q ss_pred cccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhhhccCCCcCc
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHH 218 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~Iep~~~~ 218 (954)
...-..+.......||+.|..++-..+..-.+.. -..+++.+ ..+...... ...+. .+.+..+-+...
T Consensus 82 ~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~--p~~~~~~r--~~~~~~~~~-~g~~~-------l~~~L~~~DP~~ 149 (300)
T PRK14729 82 LKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPST--PPVSSKIR--IYVNNLFTL-KGKSY-------LLEELKRVDFIR 149 (300)
T ss_pred HHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCC--CCCCHHHH--HHHHHHHHh-cCHHH-------HHHHHHhcCHHH
Confidence 1111112223445799999999875554322211 01122222 122211111 11111 111111222334
Q ss_pred ccEEEECCCCCchhhhhhhhcccCc-CCCCCcccccc
Q 002197 219 AQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (954)
Q Consensus 219 ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~~ 254 (954)
|.-+-+|| +...+++.+. ..+|.+.+.+.
T Consensus 150 A~~i~pnd-------~~Ri~RALEv~~~tG~~~s~~~ 179 (300)
T PRK14729 150 YESINKND-------IYRIKRSLEVYYQTGIPISQFL 179 (300)
T ss_pred HhhCCcCC-------HHHHHHHHHHHHHhCCChHhhh
Confidence 44555677 7788888877 66777665543
No 189
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.18 E-value=2.3e-06 Score=74.42 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=23.0
Q ss_pred EEEEEeecccch----hhhhcCCeEEEEEc
Q 002197 612 VIIFEGVYALHP----EIRKSLDLWIAVVG 637 (954)
Q Consensus 612 VVIvEG~~~~~~----~l~~~~D~~I~v~~ 637 (954)
++|+||.+.... .+.+..|.+||+++
T Consensus 34 ~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 999999999874 57888999999987
No 190
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.17 E-value=1.2e-05 Score=84.18 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=34.4
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHh-----CCeEEeccccccc
Q 002197 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVG 99 (954)
Q Consensus 58 ~~~~~~IIgItG~sGSGKSTlA~~La~~L-----g~~VIs~Dd~y~~ 99 (954)
...++.+|+|+|.+||||||+++.|+..+ |+.+++.|.+...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~ 66 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG 66 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence 45678999999999999999999999877 3566777776543
No 191
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.17 E-value=7.2e-06 Score=84.13 Aligned_cols=156 Identities=12% Similarity=0.017 Sum_probs=72.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCC----CcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL----DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p----~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
.+|+|.|++||||||+++.|+..++...+.....-+....+... .-.+.+.+...+ ..+.-+....+....+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~ 78 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGNYYG 78 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHH---HcCCcEEEEEECCeeeC
Confidence 47999999999999999999986654333321111111111000 011222222222 22222222211111111
Q ss_pred cccc-cccccCCCcEEEEEecccchhhhhcCC-C-EEEEEEcC-HHHHHHHHHHhccCCccCHHHHHHhhchhhhhccCC
Q 002197 139 RIGS-KVIKGASSGVVIVDGTYALDARLRSLL-D-IRVAVVGG-VHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEP 214 (954)
Q Consensus 139 ~~~~-~~~~~~~~~vVIvEG~~ll~~~l~~~~-D-~~I~Vda~-~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~Iep 214 (954)
.... .........++|++........+.+.+ + +.|++..+ .+....|...|........+..++.+....+.
T Consensus 79 ~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~---- 154 (180)
T TIGR03263 79 TPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAH---- 154 (180)
T ss_pred CcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc----
Confidence 1000 011112345777776544333333333 4 45666544 45555555555432223444444444433322
Q ss_pred CcCcccEEEECC
Q 002197 215 DLHHAQIRINNR 226 (954)
Q Consensus 215 ~~~~ADiII~N~ 226 (954)
.+.+|.+|.|+
T Consensus 155 -~~~~d~~i~n~ 165 (180)
T TIGR03263 155 -ADEFDYVIVND 165 (180)
T ss_pred -cccCcEEEECC
Confidence 45699999997
No 192
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.16 E-value=2.2e-06 Score=87.28 Aligned_cols=142 Identities=20% Similarity=0.188 Sum_probs=80.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCccc---HHHHHH----HHHhhhcCCccccccchhh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSID---FDALVQ----NLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D---~~~l~~----~L~~l~~g~~i~~p~~d~~ 135 (954)
.-|.+.|.+||||||+.+.||+.||.+.+|+|...-......-++-|+ .+.+++ .|.++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~------------ 70 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLE------------ 70 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhh------------
Confidence 458899999999999999999999999999999643222111111110 011111 1111111
Q ss_pred hhccccccccccCCCcEEEEEeccc-chhhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCc----cCH----HHHHHh
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYA-LDARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDS----CSL----DSLIDS 203 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l-l~~~l~~~~---D~~I~Vda~~~~rl~Rri~RD~~~r----~~~----e~~~~~ 203 (954)
.. +.||.=|-.+ ..+..+.++ -.+||+++|.++.+.|.- ++.... .++ ++.++.
T Consensus 71 ------------~~-~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~-~~~~RPll~~~~~~~~l~~L~~~ 136 (172)
T COG0703 71 ------------ED-NAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ-RDRKRPLLQTEDPREELEELLEE 136 (172)
T ss_pred ------------cC-CeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc-cccCCCcccCCChHHHHHHHHHH
Confidence 11 2444433333 333333222 388999999999887765 332221 233 344444
Q ss_pred hchhhhhccCCCcCcccEEEECCCCCchhhhhhhh
Q 002197 204 IFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKL 238 (954)
Q Consensus 204 v~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~y~l 238 (954)
-.|.|++ .||++++.+..+ .+.+.+++
T Consensus 137 R~~~Y~e-------~a~~~~~~~~~~-~~v~~~i~ 163 (172)
T COG0703 137 RQPLYRE-------VADFIIDTDDRS-EEVVEEIL 163 (172)
T ss_pred HHHHHHH-------hCcEEecCCCCc-HHHHHHHH
Confidence 4566655 599999888554 34444443
No 193
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.16 E-value=8.2e-06 Score=87.69 Aligned_cols=121 Identities=17% Similarity=0.115 Sum_probs=72.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhcc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~-~g~~i~~p~~d~~~~~~ 139 (954)
.|+.|.|.|++||||||+|+.|++.+|+.+|++|++.+.......+ +...+..+. .|..+.-.........+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~-------lg~~i~~~~~~G~lvpd~iv~~lv~~~ 77 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTT-------IGKEIQKVVTSGNLVPDNLVIAIVKDE 77 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCCh-------HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 4566999999999999999999999999999999987753322111 112222222 23222111111111111
Q ss_pred ccccccccCCCcEEEEEecccch---hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 140 IGSKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~---~~l~--~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
.... ......-+|++|.---. ..+. ...|..++++++.++.+.|...|.
T Consensus 78 l~~~--~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 78 IAKV--TDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HHhh--ccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 1110 01223468999953211 1111 357899999999999999988874
No 194
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.15 E-value=3.9e-06 Score=86.93 Aligned_cols=117 Identities=18% Similarity=0.109 Sum_probs=67.3
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccccC
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS 599 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr~ 599 (954)
|.|.|++||||||+|+.|++.+|+.++++|+..+...... +.....+.+. +.+|..+...........+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~-------~~~~~~~~~~---~~~g~~~~~~~~~~l~~~~l 71 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASG-------TELGKKAKEY---IDSGKLVPDEIVIKLLKERL 71 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcC-------ChHHHHHHHH---HHcCCccCHHHHHHHHHHHH
Confidence 6789999999999999999999999999999987521110 0001111111 11222211101000001100
Q ss_pred CccceeeccCccEEEEEeecccc------hhhhh---cCCeEEEEEcChhHHHHHHHhcCc
Q 002197 600 GFKELEVSEDCGVIIFEGVYALH------PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 600 ~~~~~~~~~~~dVVIvEG~~~~~------~~l~~---~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
.......-+|++|.-.-. ..... ..+..|+++++.+..+.|...|..
T Consensus 72 -----~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 72 -----KKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred -----hcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 000013457888853321 11222 568999999999999999988863
No 195
>PRK13946 shikimate kinase; Provisional
Probab=98.15 E-value=7.1e-06 Score=85.08 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=32.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceecccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy 552 (954)
+..|.+.|++||||||+++.|++.||+.+++.|...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~ 45 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEI 45 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHH
Confidence 457889999999999999999999999999999753
No 196
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.15 E-value=6.9e-06 Score=91.38 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=72.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh-CCeEEeccccccccccCCCCCc--cc---HHHHHHHHHhhhcCCccccccchhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDEGNDLDS--ID---FDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs~Dd~y~~~~~~~~p~s--~D---~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
+.+|.++|++||||||+|+.|++.+ ++.+++.|.+...+......+. +. ...+.......
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 67 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAA-------------- 67 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHH--------------
Confidence 4789999999999999999999999 8999999998654322111111 11 11111111000
Q ss_pred hhccccccccccCCCcEEEEEecccchh---hhhcC-----CCE-EEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhch
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALDA---RLRSL-----LDI-RVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFP 206 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~~---~l~~~-----~D~-~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p 206 (954)
... . ......+|+++...... .+..+ +++ .+|++++.+....|...|.. ...+++.+..+..
T Consensus 68 ----~~~-~--l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~--~~~~~~~i~~~~~ 138 (300)
T PHA02530 68 ----ALA-A--LKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE--RAVPEDVLRSMFK 138 (300)
T ss_pred ----HHH-H--HHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc--CCCCHHHHHHHHH
Confidence 000 0 01224577887766431 22211 233 58999999999999988832 2234444444444
Q ss_pred hhhhc
Q 002197 207 LFRKH 211 (954)
Q Consensus 207 ~~~~~ 211 (954)
.++.|
T Consensus 139 ~~~~~ 143 (300)
T PHA02530 139 QMKEY 143 (300)
T ss_pred HHHHh
Confidence 44443
No 197
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.14 E-value=1.9e-05 Score=79.81 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecccccc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~ 98 (954)
|+|+|++||||||+|+.|++.+|..+++.|+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccC
Confidence 5789999999999999999999999999999854
No 198
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.14 E-value=2.3e-05 Score=81.04 Aligned_cols=106 Identities=20% Similarity=0.246 Sum_probs=62.6
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccch
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFD 133 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d 133 (954)
..++.+|+|+|++||||||+|+.|+..+ | +.+++.|.+...+........-+.......+....
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~----------- 83 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVA----------- 83 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHH-----------
Confidence 4567899999999999999999999887 2 45677777665432211111111111111111100
Q ss_pred hhhhccccccccccCCCcEEEEEecccch---hhhhcCCC----EEEEEEcCHHHHHHH
Q 002197 134 YQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD----IRVAVVGGVHFSLIS 185 (954)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~~~D----~~I~Vda~~~~rl~R 185 (954)
........+||++.+.... ..++..+. ..+|+++|.+.+..|
T Consensus 84 ----------~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 84 ----------KLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred ----------HHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 0001224578888876654 23333332 568999999988777
No 199
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.13 E-value=4.7e-07 Score=101.14 Aligned_cols=43 Identities=37% Similarity=0.475 Sum_probs=38.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc--cccccccC
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEG 103 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd--~y~~~~~~ 103 (954)
.+.+|+|+||+||||||+|..|++.+++.+|++|+ +|++++-.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~ 47 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIG 47 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeeccccc
Confidence 45799999999999999999999999999999999 68876543
No 200
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.13 E-value=1.9e-05 Score=81.15 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=31.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCe--EEeccccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRVG 99 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~--VIs~Dd~y~~ 99 (954)
.+|.++|++||||||+|+.|++.++.. .++.|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 489999999999999999999988754 3577877654
No 201
>PRK14528 adenylate kinase; Provisional
Probab=98.12 E-value=1.2e-05 Score=83.57 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=69.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
.|.|.||+||||||+|+.|++.+|+.++++|+..+..-... + ++..+.-.-+.+|..+.-........++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~-------~---~~g~~~~~~~~~g~lvp~~~~~~~~~~~ 72 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQ-------T---AMGIEAKRYMDAGDLVPDSVVIGIIKDR 72 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcC-------C---HHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 47789999999999999999999999999999987521110 0 1111111112233322111111111111
Q ss_pred CCccceeeccCccEEEEEeecccc-------hhhh---hcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~-------~~l~---~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
.. ......-+|++|.---. ..+. ...|..|+++++.+..+.|...|..
T Consensus 73 l~-----~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 73 IR-----EADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred Hh-----CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence 10 01112468889953211 1111 2479999999999999999888854
No 202
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.11 E-value=2e-05 Score=80.92 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=32.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
+..|.|.|++||||||+++.|++.++..+++.|....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~ 40 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHH
Confidence 3458889999999999999999999999999998543
No 203
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.10 E-value=7.7e-06 Score=102.26 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=93.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc-----cCCCC------CcccHHHHH-----HHHHhhhc---
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDL------DSIDFDALV-----QNLQDLTE--- 123 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~-----~~~~p------~s~D~~~l~-----~~L~~l~~--- 123 (954)
++|+|+||+||||||+|+.||+.||+.+++++.+|+.+. .+-.+ +..|.+.+. ..+..+..
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTSYA 114 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCceEec
Confidence 699999999999999999999999999999999999532 11101 122333332 12222110
Q ss_pred -----------------------------------CCccc----cccchhhhhcc-----c----cccccccCCCcEEEE
Q 002197 124 -----------------------------------GKDTL----IPMFDYQQKNR-----I----GSKVIKGASSGVVIV 155 (954)
Q Consensus 124 -----------------------------------g~~i~----~p~~d~~~~~~-----~----~~~~~~~~~~~vVIv 155 (954)
+..+. .|......... + ...........-+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~~~~~V~ 194 (863)
T PRK12269 115 PLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCGARVVC 194 (863)
T ss_pred ccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 00000 00000000000 0 000000011124788
Q ss_pred EecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHh----hchhhhhccCCCcCcccEE-EECCCC
Q 002197 156 DGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDS----IFPLFRKHIEPDLHHAQIR-INNRFV 228 (954)
Q Consensus 156 EG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~----v~p~~~~~Iep~~~~ADiI-I~N~~~ 228 (954)
||-=... -+.+.+|+++|++|+++.|..||...... ..+.+++.+. -.....+-+.|-+...|.+ |+++..
T Consensus 195 eGRDigT-vVfPdA~~KifL~As~e~RA~RR~~e~~~-~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l 270 (863)
T PRK12269 195 EGRDLTT-VVFVDADLKCYLDASIEARVARRWAQGTS-RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCL 270 (863)
T ss_pred ECCCCcc-EECCCCCEEEEEECCHHHHHHHHHHhhhc-cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCC
Confidence 8755532 45577999999999999999999766442 2444444433 2334444577887777755 466644
No 204
>PRK13808 adenylate kinase; Provisional
Probab=98.10 E-value=1.1e-05 Score=90.85 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=68.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~ 144 (954)
|.|.||+||||||+|..|++.+|+.+|++|++.+.....+.+. ...+...+ ..|..+.-.........++..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~---g~~~~~~~---~~G~lVPdeiv~~li~e~l~~-- 74 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPV---GLKAKDIM---ASGGLVPDEVVVGIISDRIEQ-- 74 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChh---hHHHHHHH---HcCCCCCHHHHHHHHHHHHhc--
Confidence 7889999999999999999999999999999766422222211 11111111 123222211111111122111
Q ss_pred cccCCCcEEEEEecccchh---h----hh---cCCCEEEEEEcCHHHHHHHHHHh
Q 002197 145 IKGASSGVVIVDGTYALDA---R----LR---SLLDIRVAVVGGVHFSLISKVQY 189 (954)
Q Consensus 145 ~~~~~~~vVIvEG~~ll~~---~----l~---~~~D~~I~Vda~~~~rl~Rri~R 189 (954)
.....-+|+||..--.. . +. -..|++|++++|+++.+.|...|
T Consensus 75 --~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 75 --PDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred --ccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 11123588898553321 1 11 15799999999999999998877
No 205
>PLN02165 adenylate isopentenyltransferase
Probab=98.09 E-value=4.9e-06 Score=93.25 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=38.9
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc--ccccccC
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEG 103 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~--y~~~~~~ 103 (954)
+.+..+|+|.||+||||||+|..|++.++..+|++|.+ |++++-.
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg 86 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT 86 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence 33445899999999999999999999999999999985 8876654
No 206
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.09 E-value=1.6e-05 Score=80.69 Aligned_cols=54 Identities=28% Similarity=0.372 Sum_probs=42.2
Q ss_pred hcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccccccccCCCCCccc
Q 002197 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSID 110 (954)
Q Consensus 57 ~~~~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~~~~~~~~p~s~D 110 (954)
....++.+|-+||.|||||||+|.+|++.| | +.++|-|...+++...-.....|
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~ed 76 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRED 76 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHH
Confidence 346678999999999999999999999988 3 67889898888776443333333
No 207
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.09 E-value=1.1e-05 Score=82.20 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=80.1
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
...+.||.|.|++||||-|.|..+++.+|+..+|+++.-+.-... +++-....+.+.+ .+|.-+...........
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~--~gse~g~~I~~~i---~~G~iVP~ei~~~LL~~ 79 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIAS--AGSERGALIKEII---KNGDLVPVEITLSLLEE 79 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHcc--ccChHHHHHHHHH---HcCCcCcHHHHHHHHHH
Confidence 456789999999999999999999999999999999986643222 1222223333322 23433332222211111
Q ss_pred cccccccccCCCcEEEEEecccc-------hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCC
Q 002197 139 RIGSKVIKGASSGVVIVDGTYAL-------DARLRSLLDIRVAVVGGVHFSLISKVQYDIGD 193 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll-------~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~ 193 (954)
.........-+++||.-=- +..+....|+++|+||+.++++.|.+.|....
T Consensus 80 ----am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~ 137 (195)
T KOG3079|consen 80 ----AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN 137 (195)
T ss_pred ----HHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC
Confidence 1111122233788884322 23333467999999999999999999998763
No 208
>PRK14530 adenylate kinase; Provisional
Probab=98.09 E-value=6.3e-06 Score=87.51 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=67.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
.|.|.|++||||||+|+.|++.+|+..|++|++.+.......+ ..++. ...... .+.+|..+.-..........
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~--~~~~~-~~~~~~---~~~~g~~~~d~~~~~~l~~~ 78 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDIS--DMDTE-YDTPGE---YMDAGELVPDAVVNEIVEEA 78 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcc--cccch-HHHHHH---HHHcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999999999999998853211100 00000 000111 12233221111110000000
Q ss_pred CCccceeeccCccEEEEEeecccc---hhhh--hcCCeEEEEEcChhHHHHHHHhcC
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH---PEIR--KSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~---~~l~--~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
....+-+|++|...-. ..+. ...|..||++++.+..+.|...|.
T Consensus 79 --------l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 79 --------LSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred --------HhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 0112357888843222 1221 237899999999999998887764
No 209
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.09 E-value=2.9e-05 Score=77.30 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=33.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+|.++|++||||||+|+.|++.+++.+++.|++...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 477899999999999999999999999999999864
No 210
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.08 E-value=6e-06 Score=86.21 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=46.6
Q ss_pred cCCeEEEEEcChhHHHHHHHhcCccccccccch------hhHHhhhcchhhhhcccccCcccEEEcCC-CCCCCCcc
Q 002197 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRND-FDPVLSPE 697 (954)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~------~q~~~~v~p~~~~~Iep~~~~ADivI~n~-~~~rl~qe 697 (954)
.-|+.||++++.++-+.|..+| |+..+. .+|+..+...|..|++-.-.+.++.|+.+ +|.....+
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~R-----gR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~ 197 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKR-----GRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQ 197 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHh-----CCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHH
Confidence 5689999999999888877665 454442 46888888899999887766777777644 44443333
No 211
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.08 E-value=1.4e-05 Score=83.39 Aligned_cols=59 Identities=7% Similarity=-0.026 Sum_probs=42.7
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCc-c---CHHHHHHhhchhhhhccCCCcCcccEEEECC
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIGDS-C---SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~~r-~---~~e~~~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
.-|+.||++|+.++-+.|..+|.+.-. . .-..+++.+...|..|++..-..-++.|+.+
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~ 188 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGD 188 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccc
Confidence 679999999999999999888875443 1 1146777777777777766656666666554
No 212
>PRK14531 adenylate kinase; Provisional
Probab=98.07 E-value=1.8e-05 Score=81.88 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=66.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHH-HHcCCceeccccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETG 596 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~~~~ 596 (954)
..|.|.||+||||||+|+.|++.+|+..||++|..+.+.... + .+.+.+.. +..|..+.-........
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~-------~----~~~~~~~~~~~~G~~v~d~l~~~~~~ 71 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAG-------S----ALGQEAEAVMNRGELVSDALVLAIVE 71 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcC-------C----HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 357889999999999999999999999999999988532110 0 01111111 22332211100000000
Q ss_pred ccCCccceeeccCccEEEEEeecccch---hhh-------hcCCeEEEEEcChhHHHHHHHhcC
Q 002197 597 ARSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 597 dr~~~~~~~~~~~~dVVIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
++. ... ...-+|++|..--.. .+. ..+|..++++++.++...|...|.
T Consensus 72 ~~l-----~~~-~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 129 (183)
T PRK14531 72 SQL-----KAL-NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG 129 (183)
T ss_pred HHH-----hhc-cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC
Confidence 000 000 123456788764321 111 135789999999999999887774
No 213
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.07 E-value=8.3e-06 Score=83.09 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=32.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.|.|+|++||||||+|+.|++.+|..+++.|.+...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~ 39 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS 39 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence 367789999999999999999999999999988653
No 214
>PLN02199 shikimate kinase
Probab=98.06 E-value=1.9e-05 Score=87.12 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=42.9
Q ss_pred chhhhHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 40 SFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 40 s~d~~~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
+||+. .|-+..++... ..+...|.++|.+||||||+++.|++.+|+++||+|.+...
T Consensus 83 ~~de~--~Lk~~a~~i~~-~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~ 139 (303)
T PLN02199 83 PFDED--ILKRKAEEVKP-YLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQ 139 (303)
T ss_pred CCCHH--HHHHHHHHHHH-HcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHH
Confidence 67774 23333333333 33345789999999999999999999999999999997654
No 215
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.05 E-value=2.2e-05 Score=77.41 Aligned_cols=103 Identities=21% Similarity=0.259 Sum_probs=75.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc------ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV------GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~------~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~ 136 (954)
.-|.|||.+|+||||+|.+||+.+|...|.+.++.+ ++++...---+|-+.+.+.|..+..++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg---------- 77 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG---------- 77 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC----------
Confidence 458999999999999999999999999999988644 5555544456788888888876543311
Q ss_pred hccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002197 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (954)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~ 192 (954)
.||=.-|.-+|- ..++|+++.+.+|...-..|.-.|...
T Consensus 78 --------------~IVDyHgCd~Fp---erwfdlVvVLr~~~s~LY~RL~sRgY~ 116 (176)
T KOG3347|consen 78 --------------NIVDYHGCDFFP---ERWFDLVVVLRTPNSVLYDRLKSRGYS 116 (176)
T ss_pred --------------cEEeecccCccc---hhheeEEEEEecCchHHHHHHHHcCCC
Confidence 122222333332 257899999999999998888877643
No 216
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.05 E-value=2.6e-05 Score=80.67 Aligned_cols=117 Identities=20% Similarity=0.211 Sum_probs=73.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNRIGS 142 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~-~g~~i~~p~~d~~~~~~~~~ 142 (954)
.|.|.|+|||||||+|+.|++.++++.+|+|+++++......+ +........ .|+-+.-..++.....+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~-------lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTE-------LGEEIKKYIDKGELVPDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCCh-------HHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 4889999999999999999999999999999998854332211 222222222 23323323333334443332
Q ss_pred cccccCCCcEEEEEecccch---h----hhh---cCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 143 KVIKGASSGVVIVDGTYALD---A----RLR---SLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 143 ~~~~~~~~~vVIvEG~~ll~---~----~l~---~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
. .... -+|++|.--.. . .+. .-.|..+.++.+.+.-+.|...|..
T Consensus 75 ~---d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 75 A---DCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred h---cccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 1 1112 57777754433 1 111 3568999999999888888888864
No 217
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.05 E-value=1.8e-05 Score=84.38 Aligned_cols=58 Identities=9% Similarity=-0.025 Sum_probs=38.9
Q ss_pred CCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhchhhhhccCC-CcCcccEEEECC
Q 002197 169 LDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP-DLHHAQIRINNR 226 (954)
Q Consensus 169 ~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~v~p~~~~~Iep-~~~~ADiII~N~ 226 (954)
.|+.||++++++.++.|...|..... ....++++++...|.+++.+ ....+++++.|.
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~ 202 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW 202 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC
Confidence 59999999999999999887764322 23345566666666665444 345677776553
No 218
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.04 E-value=1.9e-05 Score=82.25 Aligned_cols=159 Identities=12% Similarity=0.041 Sum_probs=81.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (954)
++++|.|+|||||||||+++.|.+...-...+...-=++...++.+..+.--.+. .++...+..|+-+++-.|.-..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~---~~F~~~i~~~~f~e~~~~~g~~ 79 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTI---EEFKKGIADGEFLEWAEVHDNY 79 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCH---HHHHHHHHcCCeEEEEEECCee
Confidence 5788999999999999999999876532122221111111111110000000111 2233445567666665554322
Q ss_pred cccCCc--cce-eeccCccEEEEEeecccchhhhhcCC---eEEEEEcCh-hHHHHHHHhcCccccccccch-hhHHhhh
Q 002197 596 GARSGF--KEL-EVSEDCGVIIFEGVYALHPEIRKSLD---LWIAVVGGV-HSHLISRVQRDKSRMGCFMSQ-NDIMMTV 667 (954)
Q Consensus 596 ~dr~~~--~~~-~~~~~~dVVIvEG~~~~~~~l~~~~D---~~I~v~~~~-d~rl~Rri~RD~~~rg~~~~~-~q~~~~v 667 (954)
.+. ..+ .......++|++.-.-+...++..+. ..||+.+|. +....|+..|+.. +.+. .+.+...
T Consensus 80 ---YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~----s~e~i~~Rl~~~ 152 (186)
T PRK14737 80 ---YGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD----SEESIEKRIENG 152 (186)
T ss_pred ---ecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC----CHHHHHHHHHHH
Confidence 111 111 12345678888865544455555543 688998865 5566666666421 1111 2222222
Q ss_pred cchhhhhcccccCcccEEEcCC
Q 002197 668 FPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 668 ~p~~~~~Iep~~~~ADivI~n~ 689 (954)
.+. . .....+|.+|.|+
T Consensus 153 ~~e-~----~~~~~~D~vI~N~ 169 (186)
T PRK14737 153 IIE-L----DEANEFDYKIIND 169 (186)
T ss_pred HHH-H----hhhccCCEEEECc
Confidence 211 1 2246799999998
No 219
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.04 E-value=8.4e-06 Score=86.22 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=68.0
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHH-HHcCCceeccccccccccc
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~~~~dr 598 (954)
|.|.||+||||||+|+.|++.+|+.+||++|..+..-... .+ +...+.. +.+|..+.-........++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~----~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~ 70 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAG----TP-------LGKKAKEYMEKGELVPDEIVNQLVKER 70 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccc----cH-------HHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 6679999999999999999999999999999987521110 00 0111111 2233322111111111111
Q ss_pred CCccceeeccCccEEEEEeecccc---hhhh---h-cCCeEEEEEcChhHHHHHHHhcC
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH---PEIR---K-SLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~---~~l~---~-~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
.. .......-+|++|.---. ..+. . ..|..|+++++.+..+.|...|-
T Consensus 71 i~----~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 71 LT----QNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred Hh----cCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 10 000113568899953322 1222 2 46899999999999999988774
No 220
>PRK12338 hypothetical protein; Provisional
Probab=98.03 E-value=1.8e-05 Score=88.39 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=33.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~ 98 (954)
+|.+|+|+|++||||||+|+.||+.+|+..+..+|+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r 40 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIR 40 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHH
Confidence 57899999999999999999999999998775555544
No 221
>PRK12338 hypothetical protein; Provisional
Probab=98.02 E-value=1e-05 Score=90.31 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=35.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+|.+|+|+|+|||||||+|..|++.+|+..+..+|+.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~ 41 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIRE 41 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHH
Confidence 589999999999999999999999999988877777765
No 222
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.00 E-value=6.3e-06 Score=80.95 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=33.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+|.+.|++||||||+|+.|++.+++.+|+.|++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~ 36 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRR 36 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHH
Confidence 578899999999999999999999999999998764
No 223
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.00 E-value=3.4e-05 Score=78.71 Aligned_cols=160 Identities=16% Similarity=0.214 Sum_probs=114.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccc----cc--------c-----CCCCCcccHHHHHHHH
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG----VD--------E-----GNDLDSIDFDALVQNL 118 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~----~~--------~-----~~~p~s~D~~~l~~~L 118 (954)
+-.+|+|+|.+|+|-||++..+.+.++ ...|..|.|++- ++ . .-.|++-|+..|.+.+
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f 83 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTF 83 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHH
Confidence 457999999999999999999988875 567888998761 11 1 1247788999999988
Q ss_pred HhhhcCCccccccchh----------hhhccccccccccCCCcEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHH
Q 002197 119 QDLTEGKDTLIPMFDY----------QQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLI 184 (954)
Q Consensus 119 ~~l~~g~~i~~p~~d~----------~~~~~~~~~~~~~~~~~vVIvEG~~ll~----~~l~~~~D~~I~Vda~~~~rl~ 184 (954)
.+....+.-....|-+ ..+....+... ..+.+++..||..... -.+...||+.|-|..-.+..+.
T Consensus 84 ~eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~l-pe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWI 162 (289)
T COG3954 84 IEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPL-PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWI 162 (289)
T ss_pred HHhcccCCcchhhhhhchhhcCccCCCCCCCCCcccC-CCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHH
Confidence 8764432212222222 22222233222 2346899999988764 4677889999988877888888
Q ss_pred HHHHhccCCc-cCHHHHHHhh---chhhhhccCCCcCcccE
Q 002197 185 SKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQI 221 (954)
Q Consensus 185 Rri~RD~~~r-~~~e~~~~~v---~p~~~~~Iep~~~~ADi 221 (954)
..+.||..++ .+.+..++.+ ++.|-.||-|.-.+.|+
T Consensus 163 QK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThI 203 (289)
T COG3954 163 QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHI 203 (289)
T ss_pred HHHHhcccccCccHHHHHHHHHHhhhhHHhhcCcccccccc
Confidence 8999999888 5777777654 78888999998777776
No 224
>PRK14532 adenylate kinase; Provisional
Probab=98.00 E-value=2.8e-05 Score=80.56 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.9
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
|.|.|++||||||+|+.|++.+|+.+||+||..+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~ 37 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRA 37 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHH
Confidence 66799999999999999999999999999999875
No 225
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.99 E-value=2.5e-05 Score=94.30 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=74.1
Q ss_pred cCCcccchhhhHHHHHHHHHHHH-hcCCCcEEEEEECCCCCcHHHHHHHHHHHhCC------eEEeccccccccccCCCC
Q 002197 34 SLPVHASFDHGYYLLVKSIQELR-EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC------TLISMENYRVGVDEGNDL 106 (954)
Q Consensus 34 ~~~~~~s~d~~~~~lv~~i~~~~-~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~------~VIs~Dd~y~~~~~~~~p 106 (954)
..|..++..++ +..+.+.. .+..++.+|.|+|.+||||||+|+.|++.|+. .+++.|.+...+......
T Consensus 367 ~pP~~f~rpeV----~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f 442 (568)
T PRK05537 367 EIPEWFSFPEV----VAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGF 442 (568)
T ss_pred CCChhhcHHHH----HHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCC
Confidence 34444444443 33333333 34556789999999999999999999999985 888998886554322111
Q ss_pred CcccHHHHHHHHHhhhcCCccccccchhhhhccccccccccCCCcEEEEEecccch---hhhhcC----CC-EEEEEEcC
Q 002197 107 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL----LD-IRVAVVGG 178 (954)
Q Consensus 107 ~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~~----~D-~~I~Vda~ 178 (954)
...+.+.....+.... ........++|++.+..+. ...+.+ -. ..||++++
T Consensus 443 ~~~er~~~~~~l~~~a---------------------~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p 501 (568)
T PRK05537 443 SKEDRDLNILRIGFVA---------------------SEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATP 501 (568)
T ss_pred CHHHHHHHHHHHHHHH---------------------HHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCC
Confidence 2222222222111110 0011223577888766554 222222 23 47999999
Q ss_pred HHHHHHHH
Q 002197 179 VHFSLISK 186 (954)
Q Consensus 179 ~~~rl~Rr 186 (954)
.+++..|.
T Consensus 502 ~e~l~~R~ 509 (568)
T PRK05537 502 LEVCEQRD 509 (568)
T ss_pred HHHHHHhc
Confidence 99887663
No 226
>PLN02674 adenylate kinase
Probab=97.99 E-value=3.9e-05 Score=83.06 Aligned_cols=121 Identities=10% Similarity=-0.059 Sum_probs=73.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
.....|.|.|++||||||+|+.|++.+|+..|++++..+.....+.+- -..+.+.+ ..|..+.-.........+
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~---g~~i~~~~---~~G~lvpd~iv~~lv~~~ 102 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL---GIKAKEAM---DKGELVSDDLVVGIIDEA 102 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChh---hHHHHHHH---HcCCccCHHHHHHHHHHH
Confidence 334668899999999999999999999999999999877433222211 11122222 234333222222222222
Q ss_pred ccccccccCCCcEEEEEecccch---hhh----h---cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 140 IGSKVIKGASSGVVIVDGTYALD---ARL----R---SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~---~~l----~---~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
... .....-+|++|.---. ..+ . -..|.+|++++|.+..+.|...|.
T Consensus 103 l~~----~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 103 MKK----PSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred HhC----cCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 111 1112458888854332 111 1 247899999999999999988774
No 227
>PRK02496 adk adenylate kinase; Provisional
Probab=97.98 E-value=2.5e-05 Score=80.71 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=33.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
..|.|.||+||||||+|+.|++.+|+..+++|+..+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 3578899999999999999999999999999998764
No 228
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=97.97 E-value=3.5e-05 Score=77.33 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=73.3
Q ss_pred cceEEEEeeCCEEEEEeeccccccCcccccceeEEehhhHHHHHHHhCceeeeeeeeeeEEeecCcEEEEEecccCCCCc
Q 002197 749 SDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDAPSP 828 (954)
Q Consensus 749 ~~~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 828 (954)
...+|||..+++++||||+++.| ++|.++|.+|+..-..-|++ +..++.|+|.|..|..++.++++|.++|++..
T Consensus 34 ~~~lRiR~~~~~~~lT~K~~~~~---~~R~E~E~~i~~~~~~~l~~--~~~~~~I~K~R~~~~~~~~~~~lD~~~g~~~g 108 (148)
T cd07891 34 ERTVRVRIAGDRAYLTIKGPTNG---LSRYEFEYEIPLADAEELLA--LCEGPVIEKTRYRVPHGGHTWEVDVFHGENAG 108 (148)
T ss_pred CcEEEEEEeCCEEEEEEEeCCCC---ceEEEEEEeCCHHHHHHHHh--cCCCCeEEEEEEEEEeCCEEEEEEEEcCCCCc
Confidence 34899999999999999999987 78999999998777777776 56788999999999999999999999999942
Q ss_pred --eEEEecccHH
Q 002197 829 --YLQIKGVDKE 838 (954)
Q Consensus 829 --~~~~~~~~~~ 838 (954)
|+||.-.+-+
T Consensus 109 L~~~EiE~~~e~ 120 (148)
T cd07891 109 LVVAEIELPSED 120 (148)
T ss_pred eEEEEEEcCCcc
Confidence 9999655543
No 229
>PLN02840 tRNA dimethylallyltransferase
Probab=97.96 E-value=3.6e-06 Score=97.00 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc--cccccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhh
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd--~y~~~~~~~-~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
..++.+|+|+||+||||||+|..|++.++..+|++|. +|++++-+. .|...+...+.++|-++..-.+ .+...+|.
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e-~ySv~~F~ 96 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSD-DYSVGAFF 96 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCC-ceeHHHHH
Confidence 4455789999999999999999999999999999998 588776433 2333333333444443332221 11122222
Q ss_pred hhccccccccccCCCcEEEEEecccchhhhh
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLR 166 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~ 166 (954)
.........+.......||+.|..++-..+.
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl 127 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGGTGLYLRWYI 127 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccHHHHHHh
Confidence 2211111112223345789999999875544
No 230
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.96 E-value=2.5e-05 Score=82.89 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=33.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.|.|.|++||||||+|+.|++.+|+.++|++|..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~ 37 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHH
Confidence 477899999999999999999999999999998874
No 231
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.95 E-value=2.4e-05 Score=84.95 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=72.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccccccccCCCCCcccHH-HHHHHHHhhhcCCccccccchhhhh
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFD-ALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~~~~~~~~p~s~D~~-~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
+|.++|.+||||||+|+.|++.+ | +.+++.|.+...+..+.. ..+ .+++....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~----~~e~~~~~~~~~----------------- 59 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKE----KYEEFIRDSTLY----------------- 59 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhH----HhHHHHHHHHHH-----------------
Confidence 48899999999999999999987 3 345555554322111100 000 01110000
Q ss_pred ccccccccccCCCcEEEEEecccchh---hhh------cCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhh
Q 002197 138 NRIGSKVIKGASSGVVIVDGTYALDA---RLR------SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLF 208 (954)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~ll~~---~l~------~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~ 208 (954)
.+ ... ......||+||...... .+. ..-...||+++|.+.++.|...|... ..++.++. .+
T Consensus 60 -~i-~~~--l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~---~~~~~i~~---l~ 129 (249)
T TIGR03574 60 -LI-KTA--LKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK---IPNEVIKD---MY 129 (249)
T ss_pred -HH-HHH--HhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC---CCHHHHHH---HH
Confidence 00 000 11234688888765431 222 12236789999999999998877531 22333433 33
Q ss_pred hhccCCCc----CcccEEEECC
Q 002197 209 RKHIEPDL----HHAQIRINNR 226 (954)
Q Consensus 209 ~~~Iep~~----~~ADiII~N~ 226 (954)
.+|-+|.. ..++++|+.+
T Consensus 130 ~r~e~p~~~~~wd~~~~~vd~~ 151 (249)
T TIGR03574 130 EKFDEPGTKYSWDLPDLTIDTT 151 (249)
T ss_pred HhhCCCCCCCCccCceEEecCC
Confidence 33334442 3588888765
No 232
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.95 E-value=1.7e-05 Score=85.17 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHH-HHcCCceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL 593 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~ 593 (954)
..|+.|.|.||+||||||+|+.|++.+|+.+||+|+..+.+.... .. +.+.+.. +.+|..+.-.....
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~---t~--------lg~~i~~~~~~G~lvpd~iv~~ 72 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAK---TT--------IGKEIQKVVTSGNLVPDNLVIA 72 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcC---Ch--------HHHHHHHHHHcCCcCCHHHHHH
Confidence 456678899999999999999999999999999999998632111 00 0111211 22232211111111
Q ss_pred cccccCCccceeeccCccEEEEEeeccc-c--hhhh--hcCCeEEEEEcChhHHHHHHHhcC
Q 002197 594 ETGARSGFKELEVSEDCGVIIFEGVYAL-H--PEIR--KSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 594 ~~~dr~~~~~~~~~~~~dVVIvEG~~~~-~--~~l~--~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
...++.. .. .......+|++|.--- . ..+. ...|..++++.+.+..+.|...|.
T Consensus 73 lv~~~l~--~~-~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 73 IVKDEIA--KV-TDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HHHHHHH--hh-ccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 1111110 00 0112356888995321 1 1121 246789999999999888888774
No 233
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.93 E-value=1.1e-06 Score=96.99 Aligned_cols=102 Identities=23% Similarity=0.264 Sum_probs=58.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccc--cccccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd--~y~~~~~~~~-p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~ 140 (954)
+|+|+||+|||||++|..|++.+++.+|++|+ +|++++-+.. |..-+.+.+.++|-+...-.+ .+...++......
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~-~~~v~~f~~~a~~ 79 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSE-SYSAADFQTLALN 79 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhh-eEcHHHHHHHHHH
Confidence 58999999999999999999999999999999 6888765432 222222222222222221111 1111111111111
Q ss_pred cccccccCCCcEEEEEecccchhhhh
Q 002197 141 GSKVIKGASSGVVIVDGTYALDARLR 166 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll~~~l~ 166 (954)
.-.........+|++.|..++-..+.
T Consensus 80 ~i~~~~~~g~~pi~vGGTg~Yi~all 105 (287)
T TIGR00174 80 AIADITARGKIPLLVGGTGLYLKALL 105 (287)
T ss_pred HHHHHHhCCCCEEEEcCcHHHHHHHH
Confidence 11111223345788999999875444
No 234
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.92 E-value=8.9e-05 Score=77.06 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=24.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
.++|+|.|++||||||+|+.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999985
No 235
>PLN02748 tRNA dimethylallyltransferase
Probab=97.92 E-value=4.3e-06 Score=97.95 Aligned_cols=107 Identities=24% Similarity=0.234 Sum_probs=68.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc--cccccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhh
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd--~y~~~~~~~~-p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
.+++.+|+|+||+||||||||..|++.+++.||++|. +|++++-... |...+...+.++|-+...-.+ .+...+|.
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e-~ysv~~F~ 97 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSV-EFTAKDFR 97 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCC-cCcHHHHH
Confidence 3445689999999999999999999999999999997 6998775432 333344444455544443222 22222332
Q ss_pred hhccccccccccCCCcEEEEEecccchhhhh
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLR 166 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~ 166 (954)
.........+.....-.|||.|..++-..+.
T Consensus 98 ~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl 128 (468)
T PLN02748 98 DHAVPLIEEILSRNGLPVIVGGTNYYIQALV 128 (468)
T ss_pred HHHHHHHHHHHhcCCCeEEEcChHHHHHHHH
Confidence 2222111122233445899999999875544
No 236
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.91 E-value=3.3e-05 Score=78.07 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=31.9
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
|.|.||+||||||+|+.|+..++..+++.|+|+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~ 35 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPA 35 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccCh
Confidence 46889999999999999999999999999999753
No 237
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.90 E-value=4.7e-05 Score=79.87 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
+..+|+|.|++||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446899999999999999999998765
No 238
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.90 E-value=4.7e-05 Score=77.98 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=32.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG 99 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~ 99 (954)
+..+|+|+|.+||||||+|+.|+..+. +.+++.|.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~ 46 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTN 46 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHH
Confidence 456999999999999999999999882 567888887543
No 239
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.88 E-value=2.1e-05 Score=82.70 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=30.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~ 96 (954)
.+.+|.|+|.+||||||+|+.|++.+|+.++...|+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~ 37 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDY 37 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHH
Confidence 357999999999999999999999999876555554
No 240
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.87 E-value=5.4e-05 Score=78.69 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=38.5
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhchhhhhccCC-CcCcccEE-EECC
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP-DLHHAQIR-INNR 226 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~v~p~~~~~Iep-~~~~ADiI-I~N~ 226 (954)
..|+.+|++++++++++|...|..... ....++++.+...|..++.. ....+.++ |+++
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~ 185 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDAN 185 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEECC
Confidence 578999999999999999877754221 12234566677777777654 12334554 4544
No 241
>PRK13947 shikimate kinase; Provisional
Probab=97.86 E-value=4.4e-05 Score=77.60 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=31.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
|.|.|++||||||+|+.|++.||+.+++.|.+..
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~ 37 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIE 37 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhh
Confidence 7789999999999999999999999999998754
No 242
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.83 E-value=3.6e-05 Score=96.40 Aligned_cols=37 Identities=32% Similarity=0.751 Sum_probs=36.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
++|+|+||+||||||+|+.|++.|++.+++++.+|+.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa 71 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRA 71 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 6899999999999999999999999999999999997
No 243
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.81 E-value=3.2e-05 Score=77.55 Aligned_cols=36 Identities=33% Similarity=0.540 Sum_probs=28.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CC--eEEeccccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---GC--TLISMENYRVG 99 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g~--~VIs~Dd~y~~ 99 (954)
+|.|+|.+||||||+|+.|+..+ |. .+++.|.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~ 41 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHG 41 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHh
Confidence 47899999999999999999988 54 45666666543
No 244
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.80 E-value=5.8e-05 Score=77.43 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGC 543 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~ 543 (954)
.+|+|.||+||||||+++.|+..++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 36889999999999999999986654
No 245
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.79 E-value=0.00012 Score=80.75 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=57.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~ 136 (954)
|.+|.|+|.+||||||+|+.|++.+. +.+++.|++...... ..++......+..+......
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~--y~~~~~Ek~~R~~l~s~v~r------------ 66 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRND--YADSKKEKEARGSLKSAVER------------ 66 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSS--S--GGGHHHHHHHHHHHHHH------------
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhh--hhchhhhHHHHHHHHHHHHH------------
Confidence 56899999999999999999998762 445665554421111 11233333344333321100
Q ss_pred hccccccccccCCCcEEEEEecccchh---------hhhcCCCEEEEEEcCHHHHHHHHHHhccCCc
Q 002197 137 KNRIGSKVIKGASSGVVIVDGTYALDA---------RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (954)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~ll~~---------~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r 194 (954)
......+||+|+.+-+.. .-...--..||++++.+.++.|-..|....+
T Consensus 67 ---------~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~ 124 (270)
T PF08433_consen 67 ---------ALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPER 124 (270)
T ss_dssp ---------HHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--
T ss_pred ---------hhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCC
Confidence 012246999999986652 1112223779999999999999999875544
No 246
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.79 E-value=8.5e-05 Score=82.45 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=35.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCe-EEecccccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV 98 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~-VIs~Dd~y~ 98 (954)
...|++|.|+|++||||||+|..|++.||.. +|++|.+..
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re 129 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIRE 129 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence 4578999999999999999999999999986 899998753
No 247
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.79 E-value=2.6e-05 Score=80.80 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=74.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC---CeEEeccc-cccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMEN-YRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg---~~VIs~Dd-~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
|.+|.+||.+||||||+|+.|++.|. ..+++... |..+.- ++.....--+..++.. +.+..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~-~DEslpi~ke~yres~--------------~ks~~ 65 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGIL-WDESLPILKEVYRESF--------------LKSVE 65 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhee-cccccchHHHHHHHHH--------------HHHHH
Confidence 56789999999999999999999883 55666554 322211 1111000011111110 00000
Q ss_pred ccccccccccCCCcEEEEEecccchhhhh---------cCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhh
Q 002197 138 NRIGSKVIKGASSGVVIVDGTYALDARLR---------SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLF 208 (954)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~ll~~~l~---------~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~ 208 (954)
. ... ..-...+||++...-+..--+ .---.+||+.+|.+++++|-..|. ..-+++.+++. |
T Consensus 66 r-lld---Salkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg---epip~Evl~ql---y 135 (261)
T COG4088 66 R-LLD---SALKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG---EPIPEEVLRQL---Y 135 (261)
T ss_pred H-HHH---HHhcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC---CCCCHHHHHHH---H
Confidence 0 000 011145788887766542111 122378999999999988764432 14456666654 4
Q ss_pred hhccCCC----cCcccEEEEC
Q 002197 209 RKHIEPD----LHHAQIRINN 225 (954)
Q Consensus 209 ~~~Iep~----~~~ADiII~N 225 (954)
++|-+|- ...+-++|+.
T Consensus 136 ~RfEePn~~~rWDspll~id~ 156 (261)
T COG4088 136 DRFEEPNPDRRWDSPLLVIDD 156 (261)
T ss_pred HhhcCCCCCccccCceEEEec
Confidence 4444454 3445566663
No 248
>PRK13975 thymidylate kinase; Provisional
Probab=97.78 E-value=0.00018 Score=74.74 Aligned_cols=27 Identities=33% Similarity=0.366 Sum_probs=25.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCe
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCT 89 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~ 89 (954)
.+|.|.|+.||||||+|+.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 689999999999999999999999853
No 249
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.77 E-value=7.2e-05 Score=76.82 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=31.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc--eeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~--vIs~Ddfy~~ 554 (954)
.+|.++|++||||||+|+.|++.++.. .++.|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 378899999999999999999988654 4588888754
No 250
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=4e-05 Score=84.51 Aligned_cols=127 Identities=17% Similarity=0.120 Sum_probs=74.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc--cccccccCCC-CCcccHHHHHHHHHhhhcC-Cccccccchhhh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGND-LDSIDFDALVQNLQDLTEG-KDTLIPMFDYQQ 136 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd--~y~~~~~~~~-p~s~D~~~l~~~L~~l~~g-~~i~~p~~d~~~ 136 (954)
+-++|+|.|++|||||-||--||..|+..+|+.|. +|++++-... +...+...+.++|.....- .+...+.| ..
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F--~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEF--ED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHH--HH
Confidence 45899999999999999999999999999999998 5887653221 1112222233333322211 11111111 11
Q ss_pred hccccccccccCCCcEEEEEecccchhhhhcC---------------------CC-EEEEEEcCHHHHHHHHHHh
Q 002197 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSL---------------------LD-IRVAVVGGVHFSLISKVQY 189 (954)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~---------------------~D-~~I~Vda~~~~rl~Rri~R 189 (954)
........+.....-.+|+.|...+-..+..- +| +.+|||++..+-..|.-.|
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~R 158 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKR 158 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHH
Confidence 11111112222333456777777765333221 33 6689999988887777665
No 251
>PRK13948 shikimate kinase; Provisional
Probab=97.76 E-value=0.00011 Score=76.29 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=35.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
..+..|.+.|++||||||+++.|++.+|..++++|.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie 46 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIE 46 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHH
Confidence 456778899999999999999999999999999997654
No 252
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.76 E-value=5e-05 Score=75.94 Aligned_cols=112 Identities=21% Similarity=0.099 Sum_probs=65.2
Q ss_pred EECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccccc
Q 002197 67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146 (954)
Q Consensus 67 ItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~~~ 146 (954)
|.||+||||||+|+.|++.+|+..|+++++-+...... +.-...+.+.+ ..|..+.....-.....+....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~---s~~g~~i~~~l---~~g~~vp~~~v~~ll~~~l~~~--- 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSD---SELGKQIQEYL---DNGELVPDELVIELLKERLEQP--- 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTT---SHHHHHHHHHH---HTTSS--HHHHHHHHHHHHHSG---
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhh---hHHHHHHHHHH---HhhccchHHHHHHHHHHHHhhh---
Confidence 68999999999999999999999999999765432221 11112222222 3454443333333333332221
Q ss_pred cCCCcEEEEEecccch---h---h----hhcCCCEEEEEEcCHHHHHHHHHH
Q 002197 147 GASSGVVIVDGTYALD---A---R----LRSLLDIRVAVVGGVHFSLISKVQ 188 (954)
Q Consensus 147 ~~~~~vVIvEG~~ll~---~---~----l~~~~D~~I~Vda~~~~rl~Rri~ 188 (954)
....-+|+||.---. . . .....|.+|+++++.+....|...
T Consensus 72 -~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 72 -PCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp -GTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred -cccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 234568888864433 1 1 234467999999999888777654
No 253
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.76 E-value=7e-05 Score=75.98 Aligned_cols=105 Identities=20% Similarity=0.306 Sum_probs=73.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCC---CCcccHHHHHHHHHHHHcCCceeccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDD---FSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~---p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~ 594 (954)
+.|+|+|.+|.||||+|+.|+ .+|..++++-+|........ .++. ---.|.+.++..+..+..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~-~~de~r~s~~vD~d~~~~~le~~~~------------ 66 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYT-EYDELRKSVIVDVDKLRKRLEELLR------------ 66 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCee-ccCCccceEEeeHHHHHHHHHHHhc------------
Confidence 368999999999999999999 89999999988877422111 1111 233577778877766321
Q ss_pred ccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccc
Q 002197 595 TGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (954)
Q Consensus 595 ~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~ 659 (954)
..-.|+||.++- +.+.+|+.|.+.++++.-..|...| |++.+
T Consensus 67 ---------------~~~~Ivd~H~~h---l~~~~dlVvVLR~~p~~L~~RLk~R-----Gy~~e 108 (180)
T COG1936 67 ---------------EGSGIVDSHLSH---LLPDCDLVVVLRADPEVLYERLKGR-----GYSEE 108 (180)
T ss_pred ---------------cCCeEeechhhh---cCCCCCEEEEEcCCHHHHHHHHHHc-----CCCHH
Confidence 134567776652 3347899999999998877776554 65544
No 254
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.74 E-value=0.00014 Score=76.47 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=33.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.+.+|.|+|.+||||||+|+.|++.+|+.++...|+.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~ 40 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLRE 40 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHH
Confidence 467999999999999999999999999877776666654
No 255
>PRK13808 adenylate kinase; Provisional
Probab=97.70 E-value=0.0001 Score=83.10 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=65.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHH-HHcCCceeccccccccccc
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~~~~dr 598 (954)
|.|.||+||||||+|..|++.+|+.+||+||..+.+-.. ..+. ...+.. +..|..+.--.......++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~----~s~~-------g~~~~~~~~~G~lVPdeiv~~li~e~ 71 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAA----GTPV-------GLKAKDIMASGGLVPDEVVVGIISDR 71 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhc----CChh-------hHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 667999999999999999999999999999998752111 0010 001111 1222221111100000111
Q ss_pred CCccceeeccCccEEEEEeecccchh---h---hh----cCCeEEEEEcChhHHHHHHHhc
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALHPE---I---RK----SLDLWIAVVGGVHSHLISRVQR 649 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~~~---l---~~----~~D~~I~v~~~~d~rl~Rri~R 649 (954)
.. ......-+|++|.---..+ + .. ..|+.|++++|.++.+.|...|
T Consensus 72 l~-----~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 72 IE-----QPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred Hh-----cccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 10 0011234788885432211 1 11 4799999999999999998876
No 256
>PRK14529 adenylate kinase; Provisional
Probab=97.69 E-value=0.00014 Score=77.95 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=71.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
.|.|.|++||||||+|+.|++.+|+..+++.++.+.....+.+ -...+.+.+ ..|.-+.-.........+...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~---lg~~i~~~i---~~G~lvpdei~~~lv~~~l~~- 74 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTE---LGKKAKEYI---DRGDLVPDDITIPMILETLKQ- 74 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCCh---HHHHHHHHH---hccCcchHHHHHHHHHHHHhc-
Confidence 3788999999999999999999999999998887653322221 112222222 223332222222222222211
Q ss_pred ccccCCCcEEEEEecccch---hhh-------hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 144 VIKGASSGVVIVDGTYALD---ARL-------RSLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~---~~l-------~~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.. ..-+|+||.=--. ..+ .-..|.+|+++++.++.+.|...|..
T Consensus 75 ---~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~ 128 (223)
T PRK14529 75 ---DG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL 128 (223)
T ss_pred ---cC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence 11 3458888854332 111 12478999999999999999888753
No 257
>PLN02459 probable adenylate kinase
Probab=97.69 E-value=0.00015 Score=79.14 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=71.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l-~~g~~i~~p~~d~~~~~~~ 140 (954)
++.|.|.|++||||||+|+.|++.+|+..|+++++.+.....+.+ +...+... ..|.-+.-.........+.
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~-------lg~~i~~~~~~G~lVPdeiv~~ll~~~l 101 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGP-------LGAQLKEIVNQGKLVPDEIIFSLLSKRL 101 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccch-------hHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 355788899999999999999999999999999987642222111 11112221 2233222212211111111
Q ss_pred cccccccCCCcEEEEEecccch---hhhhc--CCCEEEEEEcCHHHHHHHHHHhc
Q 002197 141 GSKVIKGASSGVVIVDGTYALD---ARLRS--LLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll~---~~l~~--~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
... ......-+|+||.=--. ..+.. ..|.+|+++++.++.+.|...|.
T Consensus 102 ~~~--~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 102 EAG--EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred hcc--cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 110 00123468888854332 12222 36899999999999998888774
No 258
>PLN02674 adenylate kinase
Probab=97.68 E-value=0.00022 Score=77.34 Aligned_cols=121 Identities=11% Similarity=-0.028 Sum_probs=69.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~ 594 (954)
..+..|.|.||+||||||.|+.|++.+|+..||++|..+.+-... .+ +..+.-.-+.+|+.+.-......
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~----s~------~g~~i~~~~~~G~lvpd~iv~~l 98 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TP------LGIKAKEAMDKGELVSDDLVVGI 98 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhcc----Ch------hhHHHHHHHHcCCccCHHHHHHH
Confidence 334567889999999999999999999999999999998631110 00 11111111223433222111111
Q ss_pred ccccCCccceeeccCccEEEEEeecccc---hhhh-------hcCCeEEEEEcChhHHHHHHHhcC
Q 002197 595 TGARSGFKELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 595 ~~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
..++.. ......-+|++|.=--. ..+. -..|..|+++.+.+..+.|...|-
T Consensus 99 v~~~l~-----~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 99 IDEAMK-----KPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred HHHHHh-----CcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 111110 00112446777754321 1111 236889999999999888887764
No 259
>PRK14526 adenylate kinase; Provisional
Probab=97.67 E-value=0.00017 Score=76.71 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=66.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~ 144 (954)
|+|.|++||||||+|+.|++.+|+..+++++..+.....+.+. ...+.+.+. .|..+.-.........+...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~---g~~i~~~~~---~g~lvpd~~~~~lv~~~l~~-- 74 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPL---GKEIKQIVE---NGQLVPDSITIKIVEDKINT-- 74 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChh---hHHHHHHHH---cCccCChHHHHHHHHHHHhc--
Confidence 7899999999999999999999999999999866422222111 111222221 23222111111111111111
Q ss_pred cccCCCcEEEEEecc-cch--hhhhcCC--CEEEEEEcCHHHHHHHHHHhc
Q 002197 145 IKGASSGVVIVDGTY-ALD--ARLRSLL--DIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 145 ~~~~~~~vVIvEG~~-ll~--~~l~~~~--D~~I~Vda~~~~rl~Rri~RD 190 (954)
.....-+|+||.- ... ..+...+ +..+++++|.++.+.|...|.
T Consensus 75 --~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 75 --IKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred --ccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence 1112357779873 222 2232221 356788999999999988875
No 260
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.66 E-value=0.00024 Score=74.56 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=33.1
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCceeccccccc
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFK 553 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~L-----g~~vIs~Ddfy~ 553 (954)
...++.+|+|+|++||||||+|+.|+..+ ++.+++.|++..
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 34678999999999999999999999876 245666676653
No 261
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.65 E-value=0.00033 Score=77.87 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=25.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
..+.+|+|+|++||||||+++.|+. +|..++
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~ 34 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED-LGYYCV 34 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH-cCCeEE
Confidence 3457899999999999999999964 576655
No 262
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.64 E-value=0.00024 Score=74.17 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
..+|+|.|++||||||+++.|++.++
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999873
No 263
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.00019 Score=71.06 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=30.1
Q ss_pred ECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 68 GGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 68 tG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
.|.+||||||++..|++.||+..|+.|+++..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~ 32 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPP 32 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCH
Confidence 38999999999999999999999999999873
No 264
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.62 E-value=0.00019 Score=73.60 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=61.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCc--eeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccc-c
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE-T 595 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~--vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~-~ 595 (954)
+|.|+||+||||||+++.|+..++.. +.....++.. ....+-.+....+.+.+ ......+.-..+..+-.. -
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITR--PASAGGENHIALSTEEF---DHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEccc--CCCCCCccccccCHHHH---HHHHHCCCEEEEEeecCccc
Confidence 68899999999999999999987532 1111111110 00000000001111111 122233332222222100 0
Q ss_pred cccCCccceeeccCccEEEEEeecccchhhhhcCC--eEEEEEcChhHHHHHHHhcC
Q 002197 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD--LWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 596 ~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D--~~I~v~~~~d~rl~Rri~RD 650 (954)
+.... ..........+|++|.-...+.++..+. ..||++++.+....|...|.
T Consensus 78 g~~~~--i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 78 GIPAE--IDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred cChHH--HHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence 10000 0011123457888887654455444332 78899999999988887763
No 265
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.62 E-value=4.5e-05 Score=77.11 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=68.0
Q ss_pred CCCcHHHHHHHHHHHhCCeEEeccccccccccCCC---CCcccHHHHHH----HHHhhhcCCccccccchhhhhcccccc
Q 002197 71 SGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND---LDSIDFDALVQ----NLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 71 sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~---p~s~D~~~l~~----~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
+||||||+++.||+.||++++|+|.+........- ....+.+.+++ .|..+.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~--------------------- 59 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELL--------------------- 59 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHh---------------------
Confidence 69999999999999999999999997543221100 00011111111 111111
Q ss_pred ccccCCCcEEEEEecccchhhhhc---CCCEEEEEEcCHHHHHHHHHHhccCCc-cCHH---HHHH---hhchhhhhccC
Q 002197 144 VIKGASSGVVIVDGTYALDARLRS---LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLD---SLID---SIFPLFRKHIE 213 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~~~l~~---~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e---~~~~---~v~p~~~~~Ie 213 (954)
.....||...|-.+..+..++ ....+||++++++....|...++...- .... ...+ +-.|.|.
T Consensus 60 ---~~~~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~---- 132 (158)
T PF01202_consen 60 ---KENNCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYE---- 132 (158)
T ss_dssp ---CSSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHH----
T ss_pred ---ccCcEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHH----
Confidence 111224444444444443332 345899999999998888877665111 1111 1222 2234444
Q ss_pred CCcCcccEEEECCCC
Q 002197 214 PDLHHAQIRINNRFV 228 (954)
Q Consensus 214 p~~~~ADiII~N~~~ 228 (954)
..||++++.+..
T Consensus 133 ---~~a~~~v~~~~~ 144 (158)
T PF01202_consen 133 ---QAADIVVDTDGS 144 (158)
T ss_dssp ---HHSSEEEETSSC
T ss_pred ---hcCeEEEeCCCC
Confidence 468999988743
No 266
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.61 E-value=0.00019 Score=86.67 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=34.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~ 98 (954)
.+...|.+.|.+||||||+++.||+.||.++||+|.+..
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie 42 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIE 42 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHH
Confidence 345679999999999999999999999999999999644
No 267
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.61 E-value=3.5e-05 Score=79.67 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=68.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
.|.|.|||||||||+|+.|++.++++.+|.||+++...... + ++..+.-.-+.+|+-+.--.++.....|
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-------t---~lg~~~k~~i~~g~lv~d~i~~~~v~~r 71 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-------T---ELGEEIKKYIDKGELVPDEIVNGLVKER 71 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-------C---hHHHHHHHHHHcCCccchHHHHHHHHHH
Confidence 46789999999999999999999999999999999632111 1 1111111123334422222222222222
Q ss_pred CCccceeeccCccEEEEEeecccc-------hhhh---hcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~-------~~l~---~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
... .....-+|++|.=-.- ..+. ...|..+.++.+.+.-+.|...|..
T Consensus 72 l~~-----~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 72 LDE-----ADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred HHh-----hcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 210 0111257777754321 1111 2457888888888888888777754
No 268
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00018 Score=73.60 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=76.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (954)
.+.+.||.|-|++||||-|.|.++++.+|.+.+|++|..+.+.... ++--..++ -..+++|..+..-....
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~------gse~g~~I---~~~i~~G~iVP~ei~~~ 75 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA------GSERGALI---KEIIKNGDLVPVEITLS 75 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc------cChHHHHH---HHHHHcCCcCcHHHHHH
Confidence 4568899999999999999999999999999999999998643221 11111122 22334444332222111
Q ss_pred cccccCCccceeeccCccEEEEEeecc-------cchhhhhcCCeEEEEEcChhHHHHHHHhcCcc
Q 002197 594 ETGARSGFKELEVSEDCGVIIFEGVYA-------LHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652 (954)
Q Consensus 594 ~~~dr~~~~~~~~~~~~dVVIvEG~~~-------~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~ 652 (954)
...+ ++.......-++++|.== ++..+....++.+|++++.++.+.|.+.|+..
T Consensus 76 LL~~-----am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 76 LLEE-----AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred HHHH-----HHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 1100 000011112267777432 11223335689999999999999999999855
No 269
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.59 E-value=0.0002 Score=77.43 Aligned_cols=123 Identities=18% Similarity=0.287 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccccccccCCCCCcccHHHHHHHHHhh
Q 002197 47 LLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL 121 (954)
Q Consensus 47 ~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l 121 (954)
.....+..+....++..+|||||++|+|||||...|...+ | +.|+..|==-+ ...+.-. =|.-++.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp-~tGGAlL--GDRiRM~~~---- 86 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP-FTGGALL--GDRIRMQEL---- 86 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG-CC---SS----GGGCHHH----
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC-CCCCccc--ccHHHhcCc----
Confidence 3445556666666778999999999999999999998876 2 56666663111 0000000 011111111
Q ss_pred hcCCccccccc---------hhhhhccccccccccCCCcEEEEEecccch--hhhhcCCCEEEEEEcC
Q 002197 122 TEGKDTLIPMF---------DYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGG 178 (954)
Q Consensus 122 ~~g~~i~~p~~---------d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~--~~l~~~~D~~I~Vda~ 178 (954)
.....++.... ...+.+ .-..+.....++||+|-..+.+ ..+.+.+|..++|-.|
T Consensus 87 ~~d~~vfIRS~atRG~lGGls~~t~~--~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 87 SRDPGVFIRSMATRGSLGGLSRATRD--AVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp HTSTTEEEEEE---SSHHHHHHHHHH--HHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred CCCCCEEEeecCcCCCCCCccHhHHH--HHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 11111111100 000111 1112334556899999999987 4667999999999887
No 270
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.00051 Score=70.75 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=74.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeE-Eecccc--ccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhh-h
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTL-ISMENY--RVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ-Q 136 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~V-Is~Dd~--y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~-~ 136 (954)
+..++.|+||||+||||+.+.|-+..+..+ ||+-.= ..+-.++-+.-=.+.+.+.+.+ ..+.-+.+..|.-. .
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i---~~~~fLE~a~~~gnyY 79 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELI---ERDEFLEWAEYHGNYY 79 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHH---hcCCcEEEEEEcCCcc
Confidence 457899999999999999999977654321 222110 0000011010001222222222 22222222222211 1
Q ss_pred hcccc--ccccccCCCcEEEEEecccchhhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhchhhhhc
Q 002197 137 KNRIG--SKVIKGASSGVVIVDGTYALDARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKH 211 (954)
Q Consensus 137 ~~~~~--~~~~~~~~~~vVIvEG~~ll~~~l~~~~-D-~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~v~p~~~~~ 211 (954)
+.... .........-++-+|...+.. ++..+ | ..||+.+|.-..+.+|+.+...+. ......+..-......
T Consensus 80 GT~~~~ve~~~~~G~~vildId~qGa~q--vk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~- 156 (191)
T COG0194 80 GTSREPVEQALAEGKDVILDIDVQGALQ--VKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISH- 156 (191)
T ss_pred cCcHHHHHHHHhcCCeEEEEEehHHHHH--HHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH-
Confidence 11111 111122233344445554443 33322 4 568999999999999887765443 2233333222222222
Q ss_pred cCCCcCcccEEEECC
Q 002197 212 IEPDLHHAQIRINNR 226 (954)
Q Consensus 212 Iep~~~~ADiII~N~ 226 (954)
....|++|.|+
T Consensus 157 ----~~~fdyvivNd 167 (191)
T COG0194 157 ----ADEFDYVIVND 167 (191)
T ss_pred ----HHhCCEEEECc
Confidence 23478999998
No 271
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.59 E-value=0.00033 Score=74.79 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=37.6
Q ss_pred CCeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhhhhccc-ccCcccEEEc
Q 002197 629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP-HLVHAHLKIR 687 (954)
Q Consensus 629 ~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~Iep-~~~~ADivI~ 687 (954)
.|+.||++++.+..+.|...|.... .......|+..+...|.++..+ +...+++++-
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~--e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~i 200 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPH--EMKVTSAYLQDIENAYKKTFLPEISEHSEVLQY 200 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCch--hhcccHHHHHHHHHHHHHHHHHhhccCCCEEEE
Confidence 5899999999999999877665211 1111246777788888777654 3344666543
No 272
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.58 E-value=0.00042 Score=71.79 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=74.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh----CCeEEeccccccccc-cCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L----g~~VIs~Dd~y~~~~-~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~ 136 (954)
+.+|.|.||+||||+|+++.|.+.. +..+.++-.--+.-. ++.+..-...+.+...+ ..|.-+.+..+.-..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i---~~g~fve~~~~~g~~ 78 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDI---KSGLFLEWGEYSGNY 78 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHH---HcCCeEEEEEEcCcC
Confidence 3579999999999999999998864 222333332222111 11011011223333222 223333333322211
Q ss_pred hcc-ccccccccCCCcEEEEEecccchhhhhc-CCC-EEEEEEcCHHHHHHHHHH-hccCCccCHHHHHHhhchhhhhcc
Q 002197 137 KNR-IGSKVIKGASSGVVIVDGTYALDARLRS-LLD-IRVAVVGGVHFSLISKVQ-YDIGDSCSLDSLIDSIFPLFRKHI 212 (954)
Q Consensus 137 ~~~-~~~~~~~~~~~~vVIvEG~~ll~~~l~~-~~D-~~I~Vda~~~~rl~Rri~-RD~~~r~~~e~~~~~v~p~~~~~I 212 (954)
+.. .............+|+++..-....+.. ..+ ..|||..+....+.+|+. |.. .+.+.+.++....... .
T Consensus 79 YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~---~~~~~i~~rl~~a~~~-~ 154 (184)
T smart00072 79 YGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGT---ETAERIQKRLAAAQKE-A 154 (184)
T ss_pred cccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHH-H
Confidence 111 1100111123568888877544444443 234 789998666655555554 422 2233333332211111 1
Q ss_pred CCCcCcccEEEECC
Q 002197 213 EPDLHHAQIRINNR 226 (954)
Q Consensus 213 ep~~~~ADiII~N~ 226 (954)
. .....|.+|.|+
T Consensus 155 ~-~~~~fd~~I~n~ 167 (184)
T smart00072 155 Q-EYHLFDYVIVND 167 (184)
T ss_pred h-hhccCCEEEECc
Confidence 1 125589999998
No 273
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.57 E-value=0.00012 Score=81.53 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=33.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-CCceeccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFK 553 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L-g~~vIs~Ddfy~ 553 (954)
+.+|.+.|++||||||+|+.|++.+ ++.+++.|++..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH
Confidence 4678889999999999999999999 899999999754
No 274
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.56 E-value=0.00023 Score=80.67 Aligned_cols=127 Identities=13% Similarity=0.178 Sum_probs=72.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC------CeEEecccccccccc---CCCCCcccHHHHHHHHHh--------hhcCCc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGVDE---GNDLDSIDFDALVQNLQD--------LTEGKD 126 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg------~~VIs~Dd~y~~~~~---~~~p~s~D~~~l~~~L~~--------l~~g~~ 126 (954)
++.++|.+||||||+++.|+..|+ +.+++.|+|+..... .+.+....+..+++.+.. +..|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 367999999999999999997775 459999999863211 122222333444444333 222322
Q ss_pred cccc-----c-c-hh--hhhcc-------cc-----cccc--ccCCCcEEEEEecccchhh---hhc---CC---CEEEE
Q 002197 127 TLIP-----M-F-DY--QQKNR-------IG-----SKVI--KGASSGVVIVDGTYALDAR---LRS---LL---DIRVA 174 (954)
Q Consensus 127 i~~p-----~-~-d~--~~~~~-------~~-----~~~~--~~~~~~vVIvEG~~ll~~~---l~~---~~---D~~I~ 174 (954)
+..| . + ++ ..+.. .. .... ....+.++|+|+.+..... +.. .. -..||
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ 160 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLF 160 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 2222 0 0 00 00000 00 0000 0123458999999988731 111 11 17799
Q ss_pred EEcCHHHHHHHHHHhc
Q 002197 175 VVGGVHFSLISKVQYD 190 (954)
Q Consensus 175 Vda~~~~rl~Rri~RD 190 (954)
+++|.++++.|...|.
T Consensus 161 ld~ple~~l~RN~~R~ 176 (340)
T TIGR03575 161 LDCPVESCLLRNKQRP 176 (340)
T ss_pred EeCCHHHHHHHHhcCC
Confidence 9999999999998885
No 275
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.55 E-value=0.00048 Score=71.16 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=32.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~ 98 (954)
-+++|+|++||||||+++.|+..++...++.|+++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~ 39 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHP 39 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCC
Confidence 368999999999999999999999998899888754
No 276
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.55 E-value=0.00013 Score=76.67 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=32.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh---CCeEEecccccccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV 100 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~L---g~~VIs~Dd~y~~~ 100 (954)
...|.+|.+.|++||||||++..+...+ ++.+|+.|.|...+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 4678999999999999999999999987 57889999985543
No 277
>PHA00729 NTP-binding motif containing protein
Probab=97.55 E-value=0.00058 Score=73.00 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=68.1
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCe--EEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~--VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~ 136 (954)
......|+|+|++|+||||+|..|++.++.. .++.| +..++.....--+|.+.+...|.....+.
T Consensus 14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~--~~~~d~~~~~~fid~~~Ll~~L~~a~~~~----------- 80 (226)
T PHA00729 14 NNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK--DDAWQYVQNSYFFELPDALEKIQDAIDND----------- 80 (226)
T ss_pred cCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccch--hhHHhcCCcEEEEEHHHHHHHHHHHHhcC-----------
Confidence 3355789999999999999999999987632 23333 22222222233456666666665433221
Q ss_pred hccccccccccCCCcEEEEEeccc-----------------chhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 137 KNRIGSKVIKGASSGVVIVDGTYA-----------------LDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l-----------------l~~~l~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
...+++|+|+..+ +.+.++..++..++..++++....+...|.
T Consensus 81 -----------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 81 -----------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred -----------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 1124677777221 224556678999999998888777766654
No 278
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.53 E-value=0.00039 Score=72.89 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
...+|+|.||+||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446799999999999999999998764
No 279
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.53 E-value=0.00066 Score=69.96 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=73.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCC--eEEeccccccccccC-C-CCCcc-------c-HHHHHHHHHhhhcCCccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRVGVDEG-N-DLDSI-------D-FDALVQNLQDLTEGKDTLIP 130 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~--~VIs~Dd~y~~~~~~-~-~p~s~-------D-~~~l~~~L~~l~~g~~i~~p 130 (954)
.||.+.|+|.|||||+|+.|++.+.- ..++.|.|...+..+ . ....+ + ...+...+.....+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAA------ 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHH------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHH------
Confidence 48999999999999999999999974 468889986632211 0 00000 0 11111111111000
Q ss_pred cchhhhhccccccccccCCCcEEEEEecccch----hhhhc---CCC-EEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002197 131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRS---LLD-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (954)
Q Consensus 131 ~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~----~~l~~---~~D-~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~ 202 (954)
+ ........-||+|..+.-. ..+++ -++ +.|-|.||.++..+|-..|-....+.. +
T Consensus 76 ---------i---aa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G~a----~ 139 (174)
T PF07931_consen 76 ---------I---AAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIGLA----A 139 (174)
T ss_dssp ---------H---HHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTTHH----H
T ss_pred ---------H---HHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchHHH----H
Confidence 0 0001123457777665443 22322 233 557889999988888787753222211 1
Q ss_pred hhchhhhhccCCCcCcccEEEECCCCCchhhhhhhhcc
Q 002197 203 SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240 (954)
Q Consensus 203 ~v~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~y~lk~ 240 (954)
.+ +.. +.. -..-|+-||.+-.+...++.-+++.
T Consensus 140 ~q---~~~-Vh~-~~~YDleVDTs~~sp~ecA~~I~~~ 172 (174)
T PF07931_consen 140 WQ---AEH-VHE-GGRYDLEVDTSATSPEECAREILAR 172 (174)
T ss_dssp HH---TTG-GGT-T---SEEEETTSS-HHHHHHHHHTT
T ss_pred HH---Hhh-ccc-CCCCCEEEECCCCCHHHHHHHHHHH
Confidence 11 111 111 2357899998876666666555543
No 280
>PLN02842 nucleotide kinase
Probab=97.52 E-value=0.00024 Score=83.84 Aligned_cols=115 Identities=15% Similarity=0.024 Sum_probs=65.4
Q ss_pred EECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccccc
Q 002197 67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146 (954)
Q Consensus 67 ItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~~~~ 146 (954)
|.|++||||||+|+.|++.+|+.+|++++..+.....+.+ -...+.+.+ ..|..+....+.....++.... .
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~---iG~~Ire~l---~~G~lvPdeiv~~ll~drl~~~--~ 73 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTD---IGKRAKEFM---NSGRLVPDEIVIAMVTGRLSRE--D 73 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCH---HHHHHHHHH---hCCCCCcHHHHHHHHHHHHhCc--c
Confidence 7899999999999999999999999999876532221111 112223222 1232221111111111221110 0
Q ss_pred cCCCcEEEEEecccch---hhhh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 147 GASSGVVIVDGTYALD---ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 147 ~~~~~vVIvEG~~ll~---~~l~---~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
... .-+|+||.---. ..+. ...|++|++|++.++.+.|...|.
T Consensus 74 ~~~-~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 74 AKE-KGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred ccC-CcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 111 236669842211 1222 347999999999999998877664
No 281
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.52 E-value=0.00021 Score=72.27 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=30.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy~ 553 (954)
++.+|-|+|.+||||||+|+.|.+.| | +.+++.|.+-.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 47899999999999999999999987 3 55677776654
No 282
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.52 E-value=0.00081 Score=69.41 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=25.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh---CCeEEec
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI---GCTLISM 93 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L---g~~VIs~ 93 (954)
++|+|.|+.||||||+++.|++.+ |..++..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 379999999999999999999988 5554433
No 283
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.50 E-value=0.00029 Score=72.85 Aligned_cols=168 Identities=17% Similarity=0.095 Sum_probs=78.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC----CeEEecccccccc-ccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENYRVGV-DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg----~~VIs~Dd~y~~~-~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~ 136 (954)
+.+|.|+||+||||||+++.|.+.++ ..+-++-.--+.- .++.+.--.+.+.+.+.+ ..|.-+.+..++...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~---~~~~fie~~~~~g~~ 78 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMI---KAGEFIEYGEYDGNY 78 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHH---HTTHEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhh---ccccEEEEeeecchh
Confidence 45788899999999999999988764 2333333321111 111111111223332222 233334443343222
Q ss_pred hcccccc-ccccCCCcEEEEEecccchhhhh--cCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhhhccC
Q 002197 137 KNRIGSK-VIKGASSGVVIVDGTYALDARLR--SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIE 213 (954)
Q Consensus 137 ~~~~~~~-~~~~~~~~vVIvEG~~ll~~~l~--~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~Ie 213 (954)
+...... ......+.++|++...-.-..+. ...-+.|||.++....+.+++.+.... +.+.+.++....... ..
T Consensus 79 YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~--~~~~i~~r~~~~~~~-~~ 155 (183)
T PF00625_consen 79 YGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDE--SEEEIEERLERAEKE-FE 155 (183)
T ss_dssp EEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHC--HHHHHHHHHHHHHHH-HG
T ss_pred hhhccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccc--cHHHHHHHHHHHHHH-Hh
Confidence 2111110 11112345666665433223333 333478999988888888877653221 222333322111111 11
Q ss_pred CCcCcccEEEECCCCCchhhhhhhhc
Q 002197 214 PDLHHAQIRINNRFVSSFREAIYKLK 239 (954)
Q Consensus 214 p~~~~ADiII~N~~~~~~~~~~y~lk 239 (954)
.... .|.||.|+ +....+..|+
T Consensus 156 ~~~~-fd~vi~n~---~le~~~~~l~ 177 (183)
T PF00625_consen 156 HYNE-FDYVIVND---DLEEAVKELK 177 (183)
T ss_dssp GGGG-SSEEEECS---SHHHHHHHHH
T ss_pred Hhhc-CCEEEECc---CHHHHHHHHH
Confidence 1112 89999987 3444444443
No 284
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=9.2e-05 Score=73.50 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=36.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
-+.+|.|.|++||||||++++|++.||+..++.|+|+..
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~ 49 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP 49 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH
Confidence 457999999999999999999999999999999999873
No 285
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.47 E-value=0.00059 Score=84.02 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=65.6
Q ss_pred hcCCCcEEEEEECCCCCcHHHHHHHHHHHh-----CCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCcccccc
Q 002197 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (954)
Q Consensus 57 ~~~~~~~IIgItG~sGSGKSTlA~~La~~L-----g~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~ 131 (954)
....++.+|.++|.+||||||+|+.|++.| ++.+++.|.++..+........-+.....+.+..+.
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a--------- 525 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVA--------- 525 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHH---------
Confidence 344568999999999999999999999987 357889999877654321111112211111111100
Q ss_pred chhhhhccccccccccCCCcEEEEEecccch---hhhhcCC---C-EEEEEEcCHHHHHHH
Q 002197 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL---D-IRVAVVGGVHFSLIS 185 (954)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~~~---D-~~I~Vda~~~~rl~R 185 (954)
........+||++...... ..++.++ . ..+|++++.+.+..|
T Consensus 526 ------------~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R 574 (632)
T PRK05506 526 ------------RLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEAR 574 (632)
T ss_pred ------------HHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhh
Confidence 0001123477778765554 2333332 3 678999999888777
No 286
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.47 E-value=0.00025 Score=73.40 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=72.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC----CCCcccHHHH-HHHHHhhhcCCc----cccccchh
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN----DLDSIDFDAL-VQNLQDLTEGKD----TLIPMFDY 134 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~----~p~s~D~~~l-~~~L~~l~~g~~----i~~p~~d~ 134 (954)
||.|+|..|||++|+|+.||+.||+++++-+-+.......+ ....++-... ...+..+..+.. ...+..+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD- 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS---------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH-
Confidence 79999999999999999999999999999855433222211 1122332222 222222221100 0111111
Q ss_pred hhhccccccccccCCCcEEEEEecccchhhhhcCC--CEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhh-------c
Q 002197 135 QQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL--DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSI-------F 205 (954)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~--D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v-------~ 205 (954)
.................-+|+.|-.+.. +.... -+.|||.+|.+.|++|.+.|.......+...+... .
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~a~~--il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~R~~~~ 157 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRCANY--ILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKKEDKRRRAYY 157 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTTHHH--HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEecCHhh--hhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111000111111112345666655533 11222 38899999999999999999765554444433321 1
Q ss_pred hhhhhccCCCcCcccEEEECC
Q 002197 206 PLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 206 p~~~~~Iep~~~~ADiII~N~ 226 (954)
..+-..-+.+...-|+||+.+
T Consensus 158 ~~~~~~~~~d~~~YDLvint~ 178 (179)
T PF13189_consen 158 KYYTGIDWGDPSNYDLVINTS 178 (179)
T ss_dssp HHH-SS-TTBGGG-SEEEEES
T ss_pred HHHhCCCCCCchhceEEEeCc
Confidence 111111234577788888765
No 287
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00026 Score=72.40 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=31.5
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
|.+.|+.||||||+.+.||+.|+...+++|...-.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~ 39 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEK 39 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHH
Confidence 55689999999999999999999999999987643
No 288
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.46 E-value=0.00022 Score=74.07 Aligned_cols=124 Identities=16% Similarity=0.114 Sum_probs=61.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
+|+|.||+||||||+++.|+..++..++..|.+........ ..+.. .... .+....+..+.-...-.++ +..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~---g~~ 75 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG-SENHI-ALSE---QEFFTRAGQNLFALSWHAN---GLY 75 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh-HHhhe-eEcH---HHHHHHHHCCchhhHHHHh---CCc
Confidence 68899999999999999999887766555555433210000 00000 0111 1122222223111000111 111
Q ss_pred CCcc-ce-eeccCccEEEEEeecccchhhhhcC---CeEEEEEcChhHHHHHHHhcC
Q 002197 599 SGFK-EL-EVSEDCGVIIFEGVYALHPEIRKSL---DLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 599 ~~~~-~~-~~~~~~dVVIvEG~~~~~~~l~~~~---D~~I~v~~~~d~rl~Rri~RD 650 (954)
.+.. .. ........||+.|-......++..+ -..||++++.+....|...|+
T Consensus 76 yg~~~~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 76 YGVGIEIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred cCCcHHHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 1100 00 0112234566677765544444443 246889999999888887764
No 289
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.45 E-value=0.00059 Score=69.88 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceecccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy 552 (954)
+..+|+|.|++||||||+|+.|+..+. +.+++.|.+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 356899999999999999999999872 5668888764
No 290
>PLN02199 shikimate kinase
Probab=97.44 E-value=0.00052 Score=75.94 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=33.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.-|.+.|.+||||||+++.|++.+|+.+|++|.+...
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~ 139 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQ 139 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHH
Confidence 3577899999999999999999999999999988764
No 291
>PLN02459 probable adenylate kinase
Probab=97.43 E-value=0.00054 Score=74.82 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=68.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (954)
+++.|.|.||+||||||+|+.|++.+|+..||+++..+.+-... . ++..+.-.-+.+|..+.--......
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~----t------~lg~~i~~~~~~G~lVPdeiv~~ll 97 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSS----G------PLGAQLKEIVNQGKLVPDEIIFSLL 97 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhcc----c------hhHHHHHHHHHcCCccCHHHHHHHH
Confidence 45567778999999999999999999999999999997531110 0 0111111112233322111111100
Q ss_pred cccCCccceeeccCccEEEEEeecccch---hhhh--cCCeEEEEEcChhHHHHHHHhcC
Q 002197 596 GARSGFKELEVSEDCGVIIFEGVYALHP---EIRK--SLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 596 ~dr~~~~~~~~~~~~dVVIvEG~~~~~~---~l~~--~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
.++.. .. ......-+|++|.=--.. .+.. ..|..|+++++.+.-+.|...|.
T Consensus 98 ~~~l~--~~-~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 98 SKRLE--AG-EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred HHHHh--cc-cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 01100 00 001235577777542221 1212 36889999999999988887774
No 292
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.00058 Score=67.67 Aligned_cols=103 Identities=20% Similarity=0.366 Sum_probs=69.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCC-C--CcccHHHHHHHHHHHHc-CCceeccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDD-F--SSLDLSLLSKNISDIRN-GRRTKVPIFDLE 594 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~-p--~t~D~~lL~~~L~~L~~-g~~v~~P~yD~~ 594 (954)
-|.|+|-+|+||||+|..||+.+|...|.+.|+.+..+.-. .||. . --+|-+.+.+.|..+.. |..
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~-gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~--------- 78 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYE-GYDEEYKCHILDEDKVLDELEPLMIEGGN--------- 78 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchh-cccccccCccccHHHHHHHHHHHHhcCCc---------
Confidence 36689999999999999999999999999999988643321 1221 1 22566777777766432 221
Q ss_pred ccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 595 TGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 595 ~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
||=.-|.- ++|+ .+||+++.+.+|...-..|.-.|..
T Consensus 79 -----------------IVDyHgCd-~Fpe--rwfdlVvVLr~~~s~LY~RL~sRgY 115 (176)
T KOG3347|consen 79 -----------------IVDYHGCD-FFPE--RWFDLVVVLRTPNSVLYDRLKSRGY 115 (176)
T ss_pred -----------------EEeecccC-ccch--hheeEEEEEecCchHHHHHHHHcCC
Confidence 11111211 2332 3689999999999988888876653
No 293
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.42 E-value=0.00024 Score=77.20 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=25.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddf 551 (954)
+|.++|++||||||+|+.|++.++ +.+++.|.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 467899999999999999998873 345555544
No 294
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0008 Score=73.81 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccccccccCCCCCcc--cHHHHHHHHHhhh
Q 002197 50 KSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSI--DFDALVQNLQDLT 122 (954)
Q Consensus 50 ~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~~~~~~~~p~s~--D~~~l~~~L~~l~ 122 (954)
+++..+....++..+|||||++|+||||+...|...| | +.||..|-=-. . .-+++ |.-.+.+. .
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp-~----TGGsiLGDRiRM~~~----~ 109 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP-F----TGGSILGDRIRMQRL----A 109 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC-C----CCccccccHhhHHhh----c
Confidence 3445555667788999999999999999999998877 2 56777664110 0 00111 11111111 1
Q ss_pred cCCccccc---------cchhhhhccccccccccCCCcEEEEEecccch--hhhhcCCCEEEEEEcC
Q 002197 123 EGKDTLIP---------MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGG 178 (954)
Q Consensus 123 ~g~~i~~p---------~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~--~~l~~~~D~~I~Vda~ 178 (954)
....++.. ..+..+.+ .-..+.....++||+|-..+.+ ..+.+.+|..++|-.|
T Consensus 110 ~~~~vFiRs~~srG~lGGlS~at~~--~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 110 VDPGVFIRSSPSRGTLGGLSRATRE--AIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred cCCCeEEeecCCCccchhhhHHHHH--HHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 01111110 00111111 1112344567899999999988 4677999999999887
No 295
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.41 E-value=0.00057 Score=81.68 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=65.5
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
..++.+|.+.|.+||||||+|+.++...|+.+|+.|.+-. ...+.......
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------~~~~~~~a~~~----------------- 416 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------TQNCLTACERA----------------- 416 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------HHHHHHHHHHH-----------------
Confidence 4568999999999999999999999988999999998511 11111111111
Q ss_pred cccccccccCCCcEEEEEecccchh---hhhcC-----CC-EEEEEEcCHHHHHHHHHHhcc
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALDA---RLRSL-----LD-IRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~~---~l~~~-----~D-~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.....-||+|..++-.. .+..+ +. ..+|+++|.+++..|...|..
T Consensus 417 --------L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 417 --------LDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred --------HhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 11123477788887752 22221 12 457889999999999888865
No 296
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.00016 Score=71.80 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=39.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDF 560 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~ 560 (954)
+-+.+|-|.|++||||||+++.|.+.|++..+..|||+.++.....
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM 55 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKM 55 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHH
Confidence 4456888999999999999999999999999999999988554433
No 297
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.39 E-value=0.001 Score=68.64 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=33.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+++|.|++||||||+++.|+..++...++.|+++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~ 40 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA 40 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH
Confidence 688999999999999999999999989999998764
No 298
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.38 E-value=0.0008 Score=68.53 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=27.9
Q ss_pred ECCCCCcHHHHHHHHHHHhCCeEEeccccc
Q 002197 68 GGPSGSGKTSLAEKLASVIGCTLISMENYR 97 (954)
Q Consensus 68 tG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y 97 (954)
.|++||||||+++.|+..+|...++.|.++
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~ 30 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLH 30 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCC
Confidence 499999999999999999999999999864
No 299
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.38 E-value=0.0014 Score=68.13 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
..+|.|.|+.||||||+|+.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999884
No 300
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00071 Score=67.10 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=34.9
Q ss_pred CCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCC
Q 002197 524 GPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF 565 (954)
Q Consensus 524 GpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p 565 (954)
|.+||||||++..|++.||+..|..|+|+.+....+..-+.|
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiP 43 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIP 43 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCC
Confidence 899999999999999999999999999998755444333333
No 301
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.35 E-value=0.0005 Score=72.21 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=31.6
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CCceeccccccc
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFK 553 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~L---g~~vIs~Ddfy~ 553 (954)
....|.+|.++|++||||||++..+...+ ++.+|+.|+|-.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 35689999999999999999999999987 477899999854
No 302
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.35 E-value=0.00018 Score=74.81 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=34.1
Q ss_pred cCCeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhhhhccc
Q 002197 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 677 (954)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~Iep 677 (954)
..|..||++++.+..+.|...|.... ......++...+...|..++..
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~--e~~~~~~~~~~l~~~y~~~~~~ 171 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPE--EQGIPLDYLEDLHEAYEKWFLP 171 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHh--hhcCCHHHHHHHHHHHHHHHhh
Confidence 46899999999999998876664211 1111246777888888888765
No 303
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.35 E-value=0.0008 Score=81.52 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=46.6
Q ss_pred cccCCCCccchhhhHHHHHHHHHH-HHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCC------ceecccccc
Q 002197 487 LVPMPDSYDFDRGLLLSVQAIQAL-LENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC------EVVSLESYF 552 (954)
Q Consensus 487 ~~~~~~~l~~~e~~~~~i~~i~~l-~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~------~vIs~Ddfy 552 (954)
-...|+++..-|... .+.+. ..+.+++.+|.|+|.+||||||+|+.|+..|+. .+++.|.+.
T Consensus 365 G~~pP~~f~rpeV~~----iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 365 GLEIPEWFSFPEVVA----ELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred CCCCChhhcHHHHHH----HHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 366788888777633 22233 234567789999999999999999999999974 788888763
No 304
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.00071 Score=72.36 Aligned_cols=39 Identities=36% Similarity=0.542 Sum_probs=35.1
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCe-EEecccc
Q 002197 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENY 96 (954)
Q Consensus 58 ~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~-VIs~Dd~ 96 (954)
+...|.+|.|.|++|.||||+|..||..||+. +|++|..
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I 124 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI 124 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence 56678999999999999999999999999975 7888875
No 305
>PHA00729 NTP-binding motif containing protein
Probab=97.34 E-value=0.0015 Score=69.90 Aligned_cols=106 Identities=23% Similarity=0.136 Sum_probs=64.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC--ceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC--EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFD 592 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~--~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD 592 (954)
+...-|.|+|++|+||||+|..|+..++. ..++.|+-.... . ...--+|.+.+.+.|.....+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~-~-----~~~~fid~~~Ll~~L~~a~~~~-------- 80 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY-V-----QNSYFFELPDALEKIQDAIDND-------- 80 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc-C-----CcEEEEEHHHHHHHHHHHHhcC--------
Confidence 34567999999999999999999998752 233333111110 0 0112356777777666533321
Q ss_pred ccccccCCccceeeccCccEEEEEe---------ecc--------cchhhhhcCCeEEEEEcChhHHHHHHHhc
Q 002197 593 LETGARSGFKELEVSEDCGVIIFEG---------VYA--------LHPEIRKSLDLWIAVVGGVHSHLISRVQR 649 (954)
Q Consensus 593 ~~~~dr~~~~~~~~~~~~dVVIvEG---------~~~--------~~~~l~~~~D~~I~v~~~~d~rl~Rri~R 649 (954)
...+++|+|+ |+. +.+.++..++..++...+.+....+...|
T Consensus 81 ---------------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 81 ---------------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred ---------------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 0125677777 441 33556667888888888777666655444
No 306
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.33 E-value=0.00013 Score=75.49 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=57.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHH-HHHHHHHHcCCc----eecccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLL-SKNISDIRNGRR----TKVPIFDL 593 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL-~~~L~~L~~g~~----v~~P~yD~ 593 (954)
||.|+|..|||++|+|+.||+.||+.+++-+-+...........+....+|-... ...+..+..+.. ...+..+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 6899999999999999999999999987653222211111111112223333222 223333222210 01111111
Q ss_pred cccccCCccceeeccCccEEEEEeecccchhhhhc-CCeEEEEEcChhHHHHHHHhcCc
Q 002197 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKS-LDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 594 ~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~-~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
...... ..+......+-+|+.|.++.+ -+++. --+.||+.+|.+.|..|.+.|..
T Consensus 81 ~~~~~~--~~i~~la~~~~~Vi~GR~a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~ 136 (179)
T PF13189_consen 81 IFRAQS--EIIRELAAKGNCVIVGRCANY-ILRDIPNVLHVFIYAPLEFRVERIMEREG 136 (179)
T ss_dssp HHHHHH--HHHHHHHH---EEEESTTHHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT
T ss_pred HHHHHH--HHHHHHhccCCEEEEecCHhh-hhCCCCCeEEEEEECCHHHHHHHHHHHcC
Confidence 000000 001111123567888998865 11221 13899999999999999998853
No 307
>PRK14526 adenylate kinase; Provisional
Probab=97.31 E-value=0.00087 Score=71.27 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.8
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
|+|.||+||||||+|+.|++.++...+|+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHH
Confidence 67899999999999999999999999999999875
No 308
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.30 E-value=0.0013 Score=69.58 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.9
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHH
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASV 85 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~ 85 (954)
.+.+.+|.|+||+||||||+++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 556789999999999999999999763
No 309
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.29 E-value=0.00081 Score=69.31 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=31.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC--Cceeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg--~~vIs~Ddfy~~ 554 (954)
.||.+.|+|.|||||+|+.|++.+. ...+++|+|...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 3788999999999999999999996 457899999873
No 310
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0009 Score=68.25 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=33.3
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccccc
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy~ 553 (954)
+..++.+|=++|.|||||||+|.+|.+.| | +.+++-|+.-+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 35578999999999999999999999987 4 45667776644
No 311
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.0018 Score=66.75 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=65.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc-eeccccccchhhh-----ccccCCCCCcccHHHHHHHHHHHHcCCceecc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYFKSEQV-----KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~-vIs~Ddfy~~~~~-----~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P 589 (954)
+..++.|+||||+||||++++|.+..+.. .||+- =++... .+|.| .+. .++.+.+..++-+++-
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~T--TR~pR~gEv~G~dY~F-----vs~---~EF~~~i~~~~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSAT--TRKPRPGEVDGVDYFF-----VTE---EEFEELIERDEFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEec--cCCCCCCCcCCceeEe-----CCH---HHHHHHHhcCCcEEEE
Confidence 35678899999999999999998865321 12210 011001 12222 112 2333444556656555
Q ss_pred cccccccccCCccce---eeccCccEEEEEeecccchhhhhcC-C-eEEEEEcChhHHHHHHHhcC
Q 002197 590 IFDLETGARSGFKEL---EVSEDCGVIIFEGVYALHPEIRKSL-D-LWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 590 ~yD~~~~dr~~~~~~---~~~~~~dVVIvEG~~~~~~~l~~~~-D-~~I~v~~~~d~rl~Rri~RD 650 (954)
.|.- ...+.... .....+.-+|+|-=.-+...++..+ + ..||+.+|.-..|.+|+.+.
T Consensus 73 ~~~g---nyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~R 135 (191)
T COG0194 73 EYHG---NYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGR 135 (191)
T ss_pred EEcC---CcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHcc
Confidence 5433 11111111 0112234455554444444455555 4 67899999999999998764
No 312
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.27 E-value=0.00026 Score=78.62 Aligned_cols=39 Identities=33% Similarity=0.589 Sum_probs=35.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCc-eecccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYF 552 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~-vIs~Ddfy 552 (954)
.+.|++|.|+|++||||||+|..|++.||.. +++.|.+-
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~r 128 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIR 128 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 3578999999999999999999999999976 78888776
No 313
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.27 E-value=0.00032 Score=70.11 Aligned_cols=112 Identities=21% Similarity=0.140 Sum_probs=62.6
Q ss_pred eeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccccCCc
Q 002197 522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF 601 (954)
Q Consensus 522 IsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr~~~ 601 (954)
|.||+||||||+|+.|++.+|+..||+++..+..-... -++..+.-..+.+|+.+.....-.....+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~----------s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~- 69 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSD----------SELGKQIQEYLDNGELVPDELVIELLKERLE- 69 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTT----------SHHHHHHHHHHHTTSS--HHHHHHHHHHHHH-
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhh----------hHHHHHHHHHHHhhccchHHHHHHHHHHHHh-
Confidence 56999999999999999999999999999887532110 1111222223444554322221111111110
Q ss_pred cceeeccCccEEEEEeecccc---hhhh-------hcCCeEEEEEcChhHHHHHHHh
Q 002197 602 KELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQ 648 (954)
Q Consensus 602 ~~~~~~~~~dVVIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~ 648 (954)
......-+|++|.=--. ..+. ...+..|+++++.+....|...
T Consensus 70 ----~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 70 ----QPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp ----SGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred ----hhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 01224567888875432 1122 2347899999999877777654
No 314
>PRK14529 adenylate kinase; Provisional
Probab=97.27 E-value=0.001 Score=71.21 Aligned_cols=116 Identities=16% Similarity=0.052 Sum_probs=66.8
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccccC
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS 599 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr~ 599 (954)
|.|.||+||||||.|+.|++.++...+|..+..+.+-.. ++ ++..+.-.-+.+|..+..........++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~-------~t---~lg~~i~~~i~~G~lvpdei~~~lv~~~l 72 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGG-------GT---ELGKKAKEYIDRGDLVPDDITIPMILETL 72 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccC-------CC---hHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 677999999999999999999999999999998752100 00 01111111122333222111111111111
Q ss_pred CccceeeccCccEEEEEeecccc---hhhh-------hcCCeEEEEEcChhHHHHHHHhcCc
Q 002197 600 GFKELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 600 ~~~~~~~~~~~dVVIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
. ... ..-+|++|.=--. ..+. -..|..|+++++.+..+.|...|-.
T Consensus 73 ~-----~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~ 128 (223)
T PRK14529 73 K-----QDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL 128 (223)
T ss_pred h-----ccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence 0 001 3447777754221 1111 2378999999999999999887753
No 315
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.26 E-value=0.00025 Score=79.53 Aligned_cols=39 Identities=36% Similarity=0.609 Sum_probs=35.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceecccc--ccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd--fy~~ 554 (954)
.+.+|.|+||+||||||+|..|++.+++.+||.|+ +|+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~ 43 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRG 43 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeec
Confidence 35689999999999999999999999999999999 5775
No 316
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.25 E-value=0.0017 Score=67.16 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=32.2
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceecccccc
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy 552 (954)
....+.+|+|+|++||||||+|+.|...+ | +.+++.|++-
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 34567899999999999999999999887 2 4566777654
No 317
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.24 E-value=0.00062 Score=68.26 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=26.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CC--ceecccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV---GC--EVVSLESYF 552 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L---g~--~vIs~Ddfy 552 (954)
+|.|.|++||||||+|+.|+..+ +. .+++.|.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 47789999999999999999988 53 345555554
No 318
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=97.24 E-value=0.0016 Score=65.31 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=68.5
Q ss_pred ceEEEEeeCCEEEEEeeccccccCcccccceeEEehhhHHHHHHHhCceeeeeeeeeeEEeec-CcEEEEEecccCCCC-
Q 002197 750 DCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQD-GKILIEVDHLQDAPS- 827 (954)
Q Consensus 750 ~~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~~~l~~lg~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~- 827 (954)
..+|||..+++|+||+|++. .++|.++|.+|+.....-|++ +..+..|+|.|..|.. ++.++.+|.++|.+.
T Consensus 33 ~~vRvR~~~~~~~lT~K~~~----~~~R~E~E~~I~~~~~~~ll~--~~~~~~I~K~R~~~~~~~~~~~~vD~~~g~~~g 106 (146)
T cd07761 33 PEVRIRSKGEKYILTVKSGG----GLVREEIEIEIDKKEFEHLLE--KTEGNLIEKTRYLIPLEGGLLAELDVFEGRLTG 106 (146)
T ss_pred cEEEEEEECCEEEEEEEcCC----CcceEEEEEeCCHHHHHHHHH--hCCCCeEEEEEEEEEeCCCcEEEEEEEcCCCCC
Confidence 47999999999999999986 478999999997766666665 8888899999999999 999999999999764
Q ss_pred -ceEEEeccc
Q 002197 828 -PYLQIKGVD 836 (954)
Q Consensus 828 -~~~~~~~~~ 836 (954)
-|++|.-.+
T Consensus 107 L~~~EvE~~s 116 (146)
T cd07761 107 LVYAEVEFPS 116 (146)
T ss_pred eEEEEEEcCC
Confidence 366765444
No 319
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.24 E-value=0.0013 Score=72.36 Aligned_cols=131 Identities=21% Similarity=0.223 Sum_probs=69.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~ 141 (954)
|.+|.|||.|||||||..+.|.. +|+..|| + +....+.+.+.....+.. ...
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED-~Gy~cvD--N-------------lP~~Ll~~l~~~~~~~~~-~~~----------- 52 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALED-LGYYCVD--N-------------LPPSLLPQLIELLAQSNS-KIE----------- 52 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHh-cCeeEEc--C-------------CcHHHHHHHHHHHHhcCC-CCc-----------
Confidence 56899999999999999999965 6755553 2 122333333332221111 000
Q ss_pred ccccccCCCcEEEEEeccc--ch------hhhh-cCCC-EEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhchhhhh
Q 002197 142 SKVIKGASSGVVIVDGTYA--LD------ARLR-SLLD-IRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRK 210 (954)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l--l~------~~l~-~~~D-~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~v~p~~~~ 210 (954)
.-.+++|.--. +. ..+. ...+ ..+|++|+.++-++|.-.-...-. .......+. ...+++
T Consensus 53 --------~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~-I~~Er~ 123 (284)
T PF03668_consen 53 --------KVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEA-IEKERE 123 (284)
T ss_pred --------eEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHH-HHHHHH
Confidence 00112221110 00 1111 1223 568999998887777643221111 110011111 345666
Q ss_pred ccCCCcCcccEEEECCCCC
Q 002197 211 HIEPDLHHAQIRINNRFVS 229 (954)
Q Consensus 211 ~Iep~~~~ADiII~N~~~~ 229 (954)
.++|-+..||+|||.+..+
T Consensus 124 ~L~~lr~~Ad~vIDTs~l~ 142 (284)
T PF03668_consen 124 LLEPLRERADLVIDTSNLS 142 (284)
T ss_pred HHHHHHHhCCEEEECCCCC
Confidence 7788899999999998653
No 320
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.19 E-value=0.00072 Score=80.53 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=32.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~ 98 (954)
.|+|+|.+||||||+++.|++.+|+.++++|.+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~ 36 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIE 36 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHH
Confidence 48999999999999999999999999999999754
No 321
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.19 E-value=0.00045 Score=78.31 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=30.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhC------Cceeccccccch
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYFKS 554 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg------~~vIs~Ddfy~~ 554 (954)
+.++|++||||||+++.|+..|. +.++++|||+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~ 42 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE 42 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence 56799999999999999998774 559999999964
No 322
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0014 Score=66.31 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=33.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs~Dd~y~ 98 (954)
.+++|.|+|.+|+||||+.+.+.+.+ +..+++-.++..
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Ml 41 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLML 41 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHH
Confidence 47999999999999999999999988 777888877644
No 323
>COG0645 Predicted kinase [General function prediction only]
Probab=97.18 E-value=0.0019 Score=65.61 Aligned_cols=111 Identities=21% Similarity=0.173 Sum_probs=71.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccccc-----CCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~-----~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
.++.+.|.+||||||+|+.|++.+|+..|.+|...+.+-. .+..+.+..+.-... |+.-.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~v--------------y~~l~- 66 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAV--------------YDELL- 66 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHH--------------HHHHH-
Confidence 5688999999999999999999999999999998765433 222232322211110 11000
Q ss_pred ccccccccccCCCcEEEEEecccch---hhhhcCCC------EEEEEEcCHHHHHHHHHHhcc
Q 002197 138 NRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD------IRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~~~D------~~I~Vda~~~~rl~Rri~RD~ 191 (954)
...........-||+|+.+.-. ...+.+++ ..|..+++.++...|...|..
T Consensus 67 ---~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 67 ---GRAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred ---HHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 0011112334578899998876 22333332 347889999999999999876
No 324
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.16 E-value=0.00079 Score=78.60 Aligned_cols=39 Identities=41% Similarity=0.513 Sum_probs=35.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCe-EEecccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV 98 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~-VIs~Dd~y~ 98 (954)
.+|.+|.++|++||||||+|..|+..+|+. +|++|.+..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 468999999999999999999999999986 889998633
No 325
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.15 E-value=0.0023 Score=66.36 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=65.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC----Cceeccccccchhhh--ccccCCCCCcccHHHHHHHHHHHHcCCceecccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg----~~vIs~Ddfy~~~~~--~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (954)
.+|.|.|||||||+|+++.|.+... ..+.++-..-++.+. .++.| -.-.+....+..|+-++.-.|
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~f--------vs~~ef~~~i~~g~fve~~~~ 74 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHF--------VSREEFEDDIKSGLFLEWGEY 74 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEE--------CCHHHHHHHHHcCCeEEEEEE
Confidence 4677899999999999999988642 122222222111110 11111 111223344556666665555
Q ss_pred cccccccCCccce-eeccCccEEEEEeecccchhhhhc-CC-eEEEEEcChhHHHHHHHh
Q 002197 592 DLETGARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS-LD-LWIAVVGGVHSHLISRVQ 648 (954)
Q Consensus 592 D~~~~dr~~~~~~-~~~~~~dVVIvEG~~~~~~~l~~~-~D-~~I~v~~~~d~rl~Rri~ 648 (954)
.-....-. ...+ ......+++|+++-.-+...+... .+ ..||+.++....+.+|+.
T Consensus 75 ~g~~YGt~-~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~ 133 (184)
T smart00072 75 SGNYYGTS-KETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR 133 (184)
T ss_pred cCcCcccC-HHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH
Confidence 43211100 0011 112346788988876655555543 34 788998777766666665
No 326
>PRK13975 thymidylate kinase; Provisional
Probab=97.13 E-value=0.0026 Score=66.15 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=24.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCE 544 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~ 544 (954)
.+|.|.|+.||||||+|+.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 589999999999999999999999853
No 327
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.12 E-value=0.00066 Score=81.98 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=33.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
...|.+.|.+||||||+++.|++.||..++++|++.-.
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~ 43 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER 43 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH
Confidence 34567789999999999999999999999999997643
No 328
>PLN02842 nucleotide kinase
Probab=97.12 E-value=0.00072 Score=79.94 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=63.7
Q ss_pred eeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccccCCc
Q 002197 522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF 601 (954)
Q Consensus 522 IsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr~~~ 601 (954)
|.|++||||||+|+.|++.++..++++++..+.+... ++--...+++. +.+|+.+.-........++...
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~-------~T~iG~~Ire~---l~~G~lvPdeiv~~ll~drl~~ 71 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSA-------GTDIGKRAKEF---MNSGRLVPDEIVIAMVTGRLSR 71 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhcc-------CCHHHHHHHHH---HhCCCCCcHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999988753111 01001111111 2233221111111111111100
Q ss_pred cceeeccCccEEEEEeecccc---hhhh---hcCCeEEEEEcChhHHHHHHHhcC
Q 002197 602 KELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 602 ~~~~~~~~~dVVIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
.. .. ..-+|++|.---. ..+. ...|+.|+++++.+..+.|...|.
T Consensus 72 ~~---~~-~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 72 ED---AK-EKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred cc---cc-CCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 00 01 1225669842111 1122 236899999999999999977764
No 329
>COG4639 Predicted kinase [General function prediction only]
Probab=97.07 E-value=0.0011 Score=66.22 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=63.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccccc--CC-CCCccc---HHHHHHHHHhhhcCCccccccchhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE--GN-DLDSID---FDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~--~~-~p~s~D---~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
+.+|++.|.+||||||+|+..- +.+.++++|++...+.. .. ....-| ++.+.+.+...
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qr-------------- 65 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQR-------------- 65 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHH--------------
Confidence 4689999999999999999852 47899999998764421 10 010111 11122222211
Q ss_pred hhccccccccccCCCcEEEEEecccchh---------hhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALDA---------RLRSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~~---------~l~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
...++..|++...+-.+ ....+.+..|++|.|...+..|-..|+
T Consensus 66 -----------l~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~ 118 (168)
T COG4639 66 -----------LRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE 118 (168)
T ss_pred -----------HHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc
Confidence 12235677777776542 223455677999999999998865443
No 330
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.06 E-value=0.0016 Score=72.40 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCce
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~v 545 (954)
.+.+|+|+|++||||||+++.|.. +|..+
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~ 33 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED-LGYYC 33 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH-cCCeE
Confidence 345899999999999999999964 45433
No 331
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.05 E-value=0.00039 Score=70.33 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=26.9
Q ss_pred CCccHHHHHHHHHHHhCCceeccccccch
Q 002197 526 SGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 526 sGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+||||||+++.||+.||+.++++|+++-.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~ 29 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE 29 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHH
Confidence 69999999999999999999999998753
No 332
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.02 E-value=0.0012 Score=78.98 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.7
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf 551 (954)
...|.+|.+.|++||||||+|+.++...|..+|+.|.+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 45688999999999999999999999889999999976
No 333
>PRK13973 thymidylate kinase; Provisional
Probab=97.00 E-value=0.0041 Score=66.11 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=27.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh---CCeEEec
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI---GCTLISM 93 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L---g~~VIs~ 93 (954)
.+|.|-|+.||||||.++.|++.| |..++.+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 688999999999999999999999 7777665
No 334
>PLN02840 tRNA dimethylallyltransferase
Probab=97.00 E-value=0.00058 Score=79.12 Aligned_cols=38 Identities=32% Similarity=0.532 Sum_probs=34.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf 551 (954)
.....+|.|+||+||||||+|..|++.++..+||+|++
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 34566899999999999999999999999999999985
No 335
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0027 Score=62.91 Aligned_cols=51 Identities=29% Similarity=0.421 Sum_probs=39.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccccccccCCCCCccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSID 110 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~~~~~~~~p~s~D 110 (954)
.+--+|-|||-+||||||+|-+|.+.| | +.+++.|+..+++...-...+-|
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~d 84 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAED 84 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhh
Confidence 344789999999999999999999887 3 56889999888765433333333
No 336
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=96.94 E-value=0.0023 Score=67.38 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=87.1
Q ss_pred hhhcccccccCCCCCCCCCcCCcc-eEEEEeeCCEEEEEeeccc-cccCcccccceeEEehhh-----------HHHHHH
Q 002197 727 AQNFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPL-REGNFIIQPKVDFDISIS-----------TVAGLL 793 (954)
Q Consensus 727 v~~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~-~d~~~~~~~~~~~~v~~~-----------~~~~l~ 793 (954)
.....+.||..| +..++..+ +||||+.++++.+|+|.+. .++....|+|.|++|+.. +...+.
T Consensus 32 ~~~l~~~YfDTp----d~~L~~~~~aLRiR~~~~~~~~TlK~~~~~~~g~~~R~E~e~~l~~~~~~l~~~~~~~~~~~~~ 107 (197)
T cd07756 32 TRRLHNTYFDTP----DLALRRAGIALRVRREGGQWVQTLKTAGSVVGGLHQRPEWEVPLPGPAPDLDLASILPDGELLE 107 (197)
T ss_pred eeeeeeeeeeCc----ChHHHhCCCEEEEEeeCCeEEEEEeeCCcCCCCcccceeEcccCCCCCcCcchhhcCCcccCHh
Confidence 345678888888 66666666 9999999999999999886 445677899999999332 334566
Q ss_pred Hh----CceeeeeeeeeeEEeec----CcEEEEEec--ccCCC--CceEE----EecccHHHHHHHHhhc
Q 002197 794 NL----GYQAVAYIEASAFIYQD----GKILIEVDH--LQDAP--SPYLQ----IKGVDKEAVAAAGSTL 847 (954)
Q Consensus 794 ~l----g~~~~~~~~~~~~~~~~----~~~~~~~d~--~~~~~--~~~~~----~~~~~~~~v~~~~~~l 847 (954)
++ ++.++..+...|+.+.. ..|+|++|. |..-+ .+.-| +|.-+...++++|.+|
T Consensus 108 ~l~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~l 177 (197)
T cd07756 108 ALAALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARRL 177 (197)
T ss_pred hhhccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHHH
Confidence 66 49999999999988876 459999998 44222 23433 4767777888888766
No 337
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.93 E-value=0.0024 Score=66.02 Aligned_cols=124 Identities=18% Similarity=0.140 Sum_probs=64.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC----ceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGC----EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~----~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (954)
.+|.|.||+||||||+++.|.+.++- .+-+.-.--++ .+.+.. .+.+-.-.++...+..|+-++.-.|+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~---~E~~g~---~y~fvs~~~f~~~~~~~~fie~~~~~g 76 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRP---GEVDGV---DYHFVSKEEFERMIKAGEFIEYGEYDG 76 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGT---TS-TTT---SEEE--HHHHHHHHHTTHEEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcc---cccCCc---ceEEEeechhhhhhccccEEEEeeecc
Confidence 45667999999999999999987641 12221111111 111100 111111122333445666677666643
Q ss_pred cc-cccCCccce-eeccCccEEEEEeecccchhhhhc--CCeEEEEEcChhHHHHHHHhc
Q 002197 594 ET-GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS--LDLWIAVVGGVHSHLISRVQR 649 (954)
Q Consensus 594 ~~-~dr~~~~~~-~~~~~~dVVIvEG~~~~~~~l~~~--~D~~I~v~~~~d~rl~Rri~R 649 (954)
.. |... ..+ ......+++|++.-..+-..++.. .-+.|||.++....+.+++.+
T Consensus 77 ~~YGt~~--~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~ 134 (183)
T PF00625_consen 77 NYYGTSK--SAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRR 134 (183)
T ss_dssp EEEEEEH--HHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHT
T ss_pred hhhhhcc--chhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhc
Confidence 22 2111 111 122345677776554444445443 236889998888888888755
No 338
>PLN02165 adenylate isopentenyltransferase
Probab=96.92 E-value=0.00075 Score=76.02 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=33.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf 551 (954)
+..+|+|.||+||||||||..|+..++..+|++|..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 345899999999999999999999999999999987
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.92 E-value=0.00089 Score=72.49 Aligned_cols=45 Identities=24% Similarity=0.570 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCceeccc
Q 002197 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLE 549 (954)
Q Consensus 505 ~~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~L-----g~~vIs~D 549 (954)
..++.+..+.++.++|||+||+|+|||||...|...+ .+.|+..|
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 3455556667788999999999999999999998876 25566665
No 340
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.91 E-value=0.0035 Score=67.70 Aligned_cols=38 Identities=34% Similarity=0.482 Sum_probs=33.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCC---eEEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~---~VIs~Dd~y~ 98 (954)
..++|.+-|++|||||+||+.||+.||. +-+.+|+.|.
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv 110 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV 110 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence 4689999999999999999999999994 5567888655
No 341
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.89 E-value=0.0059 Score=62.22 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=28.4
Q ss_pred eCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 523 GGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 523 sGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
.|+|||||||+++.|+..+|...++.|.++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~ 31 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHP 31 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCc
Confidence 4999999999999999999999999998764
No 342
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.89 E-value=0.0011 Score=74.96 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=33.0
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccc
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddf 551 (954)
..+++++|||+|++|||||||+..|...+. +.+++.|.-
T Consensus 52 ~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 52 HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 467899999999999999999999887762 668888864
No 343
>PRK07933 thymidylate kinase; Validated
Probab=96.81 E-value=0.0083 Score=63.92 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccC------Cc-cCHHHHHHhhchhhhhcc
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIG------DS-CSLDSLIDSIFPLFRKHI 212 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~------~r-~~~e~~~~~v~p~~~~~I 212 (954)
.-|++||+|+|++..+.|...|... ++ ....++..++...|.++.
T Consensus 132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~ 183 (213)
T PRK07933 132 VPDLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELA 183 (213)
T ss_pred CCCEEEEecCCHHHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHH
Confidence 4699999999999999998877532 11 222356666666666654
No 344
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.80 E-value=0.0035 Score=66.32 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=24.4
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHH
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANI 540 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~ 540 (954)
+.+.+.+|.|+|||||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567888999999999999999999764
No 345
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0015 Score=71.66 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--CceeccccccchhhhccccCCCCCcccHHHHHHHH
Q 002197 503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNI 577 (954)
Q Consensus 503 ~i~~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L 577 (954)
..+.+..+....+++.+|||+|++|+|||||..+|...| | +.||..|==-.- .-|++=-+..+ +
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~---------TGGsiLGDRiR--M 105 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF---------TGGSILGDRIR--M 105 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC---------CCccccccHhh--H
Confidence 345566667788999999999999999999999998877 2 667777622110 00111000000 0
Q ss_pred HHHHcCCceecccccccccccC---Cc-----cce--eeccCccEEEEEeecccc--hhhhhcCCeEEEEEcCh
Q 002197 578 SDIRNGRRTKVPIFDLETGARS---GF-----KEL--EVSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGV 639 (954)
Q Consensus 578 ~~L~~g~~v~~P~yD~~~~dr~---~~-----~~~--~~~~~~dVVIvEG~~~~~--~~l~~~~D~~I~v~~~~ 639 (954)
+.+..... .|-.+...|- +- +.+ ......|+||+|-.-++. -.+.++.|..+++..|.
T Consensus 106 ~~~~~~~~----vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 106 QRLAVDPG----VFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred HhhccCCC----eEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 11111111 1111111110 00 001 112468999999999986 56789999999998653
No 346
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=96.77 E-value=0.0035 Score=64.36 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=72.7
Q ss_pred hcccccccCCCCCCCCCcCCcc-eEEEEeeCCEEEEEeeccccccCcccccceeEEehhhHH------------HHHHHh
Q 002197 729 NFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTV------------AGLLNL 795 (954)
Q Consensus 729 ~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~------------~~l~~l 795 (954)
.+.++||..|.. .+.... +||.|..++++.+|+|.+..+ ..|+|.|+.|..... ..+..+
T Consensus 33 ~~~~~YfDT~d~----~l~~~~lrlR~r~~~~~~~~TlK~~~~~---~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (174)
T cd07374 33 QLRAIYFDTPDL----RLARAGLRLRRRTGGADAGWHLKLPGGI---SRRTEVRAPLGDAAAVAPLLLAAALVLAVTRGL 105 (174)
T ss_pred eeeeeEecCccc----hhhhCCcEEEEEcCCCccEEEEEccCCC---CCceEEEeecCCccCCcccccchhheeeecCCC
Confidence 567889988844 222222 556556667999999998765 679999999943222 456779
Q ss_pred CceeeeeeeeeeEEeecC-----cEEEEEecccCC------CCceEEE
Q 002197 796 GYQAVAYIEASAFIYQDG-----KILIEVDHLQDA------PSPYLQI 832 (954)
Q Consensus 796 g~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~~------~~~~~~~ 832 (954)
|++++..+...|+.|..+ .++|++|..+.. .-.++|+
T Consensus 106 ~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~~e~E~ 153 (174)
T cd07374 106 PLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQYWREV 153 (174)
T ss_pred CceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcceEEEEE
Confidence 999999999999888765 599999999883 3378888
No 347
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.73 E-value=0.0062 Score=63.28 Aligned_cols=41 Identities=39% Similarity=0.669 Sum_probs=34.0
Q ss_pred CCCC-EEEeeeCCCCccHHHHHHHHHHHh----CCceeccccccch
Q 002197 514 KGLP-VIVGIGGPSGSGKTSLAHKMANIV----GCEVVSLESYFKS 554 (954)
Q Consensus 514 ~~~p-~iIGIsGpsGSGKTTlA~~La~~L----g~~vIs~Ddfy~~ 554 (954)
.++| +.|++.||+|||||||..++.+.| .+.||.-|=|+..
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~ 54 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKE 54 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechh
Confidence 4556 899999999999999988877666 5788888888754
No 348
>PLN02748 tRNA dimethylallyltransferase
Probab=96.71 E-value=0.0013 Score=77.56 Aligned_cols=40 Identities=33% Similarity=0.567 Sum_probs=36.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceecccc--ccch
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd--fy~~ 554 (954)
+.+.+|.|.||+||||||||..|+..+++.+|++|. +|+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrg 61 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSG 61 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCC
Confidence 455689999999999999999999999999999996 6875
No 349
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.71 E-value=0.0017 Score=62.30 Aligned_cols=32 Identities=38% Similarity=0.699 Sum_probs=28.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecccc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~ 96 (954)
|.|.|++|+||||+++.+++.++.+++..|..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence 67999999999999999999999888766653
No 350
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.69 E-value=0.0022 Score=76.44 Aligned_cols=36 Identities=14% Similarity=0.404 Sum_probs=33.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.|+|+|++||||||+++.|++.+|+.++++|++...
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~ 37 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER 37 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH
Confidence 478999999999999999999999999999988643
No 351
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.67 E-value=0.0024 Score=70.40 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=53.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----CceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (954)
+|.|+|.+||||||+|+.|++.+. +.+++-|++.... .. |.+ +..-...+..+.....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~--~~--y~~--~~~Ek~~R~~l~s~v~----------- 65 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDR--ND--YAD--SKKEKEARGSLKSAVE----------- 65 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TT--SS--S----GGGHHHHHHHHHHHHH-----------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccch--hh--hhc--hhhhHHHHHHHHHHHH-----------
Confidence 678999999999999999999762 4556655444211 11 221 2222222322222000
Q ss_pred cccccCCccceeeccCccEEEEEeecccc---hh---hhhcC---CeEEEEEcChhHHHHHHHhcC
Q 002197 594 ETGARSGFKELEVSEDCGVIIFEGVYALH---PE---IRKSL---DLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 594 ~~~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~---l~~~~---D~~I~v~~~~d~rl~Rri~RD 650 (954)
.......+||+++.+-.. -+ +.... -..||++++.+.++.|-..|.
T Consensus 66 -----------r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 66 -----------RALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp -----------HHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred -----------HhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 001224799999988432 11 11111 267999999999999998775
No 352
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.66 E-value=0.0012 Score=73.32 Aligned_cols=36 Identities=33% Similarity=0.623 Sum_probs=33.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceecccc--ccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd--fy~~ 554 (954)
+|.|+||+|||||+||..|++.++..+||+|+ +|+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~ 38 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKG 38 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeee
Confidence 47899999999999999999999999999998 5775
No 353
>PLN02924 thymidylate kinase
Probab=96.65 E-value=0.0085 Score=64.20 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
.+..+|+|.|..||||||+++.|++.|.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999999985
No 354
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.65 E-value=0.0015 Score=62.61 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=27.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceecccccc
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy 552 (954)
|.|.||+|+||||+|+.+++.++..++.+|-..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence 568999999999999999999998776665443
No 355
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.64 E-value=0.002 Score=69.40 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=33.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC---ceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC---EVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~---~vIs~Ddfy~~ 554 (954)
+..+|.+.|+.|||||+||+.||+.||. +-+.||+.|..
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvd 111 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVD 111 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeec
Confidence 4578999999999999999999999984 45678988875
No 356
>COG4639 Predicted kinase [General function prediction only]
Probab=96.64 E-value=0.0028 Score=63.48 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=30.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+.+|.+.|+|||||||+|+.. ...+.++|+||+-..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~ 37 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLL 37 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHH
Confidence 457889999999999999973 357889999999763
No 357
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.63 E-value=0.0029 Score=71.64 Aligned_cols=40 Identities=25% Similarity=0.556 Sum_probs=33.0
Q ss_pred HhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 002197 56 REKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN 95 (954)
Q Consensus 56 ~~~~~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd 95 (954)
....+++.+|||+|++||||||++..|...+ | +.||..|.
T Consensus 50 ~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 50 LPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred hhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3346778999999999999999999987766 2 66788876
No 358
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.63 E-value=0.0025 Score=67.15 Aligned_cols=40 Identities=35% Similarity=0.492 Sum_probs=31.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc--ccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD 101 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~--y~~~~ 101 (954)
|.++.|.||+|+|||.+|-.||+.+|++||+.|.+ |.++.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~ 42 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELS 42 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGT
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccc
Confidence 57899999999999999999999999999999995 77654
No 359
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.58 E-value=0.0017 Score=68.37 Aligned_cols=38 Identities=29% Similarity=0.559 Sum_probs=32.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-----CCceeccccccch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L-----g~~vIs~Ddfy~~ 554 (954)
|.+|.+.||+|+||||.+.+||..+ .+.++++|.|--.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 7899999999999999999999877 2678999888654
No 360
>PRK13973 thymidylate kinase; Provisional
Probab=96.54 E-value=0.0066 Score=64.52 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=27.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh---CCceecc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSL 548 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L---g~~vIs~ 548 (954)
..+|.|-|+.||||||.++.|++.| |..++.+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3678899999999999999999998 6656544
No 361
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.51 E-value=0.0038 Score=71.11 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHHhc-CCCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 41 FDHGYYLLVKSIQELREK-KGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 41 ~d~~~~~lv~~i~~~~~~-~~~~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
.++....+++.+...... ..+..++++.||+||||||+|+.|+..++
T Consensus 56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 556677777777665542 34568999999999999999999999775
No 362
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.50 E-value=0.0057 Score=60.32 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=29.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCe-EEecccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENY 96 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~-VIs~Dd~ 96 (954)
....+|++.|..||||||+++.+++.+|+. .++.-.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf 57 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTF 57 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCe
Confidence 445689999999999999999999999853 3444444
No 363
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.37 E-value=0.0029 Score=64.06 Aligned_cols=32 Identities=34% Similarity=0.544 Sum_probs=23.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~ 98 (954)
.|+|+|++||||||+++.|++. |+.++ ..+.+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar 32 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAR 32 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHH
Confidence 3899999999999999999997 98888 66555
No 364
>PLN02772 guanylate kinase
Probab=96.32 E-value=0.021 Score=65.79 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
..++|.|+||+|||||||.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 45799999999999999999997754
No 365
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.26 E-value=0.0064 Score=69.28 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=33.0
Q ss_pred chhhhHHHHHHHHHHHHc-CCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 496 FDRGLLLSVQAIQALLEN-KGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 496 ~~e~~~~~i~~i~~l~~~-~~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.++.+.-.+..++..... ..+..++++.||+||||||+|+.|+..++
T Consensus 56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344444344444444432 23468899999999999999999999885
No 366
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.18 E-value=0.0075 Score=59.50 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc-eeccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESY 551 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~-vIs~Ddf 551 (954)
....+|.+.|+.|||||||++.+++.+|+. .++.-.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf 57 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTF 57 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCe
Confidence 445689999999999999999999999853 3433333
No 367
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.0042 Score=69.26 Aligned_cols=39 Identities=41% Similarity=0.730 Sum_probs=35.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc--cch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf--y~~ 554 (954)
.+.+|.|.||+|||||-+|-.||+.+|..|||+|+. |+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~ 42 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRG 42 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCC
Confidence 367899999999999999999999999999999987 664
No 368
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.16 E-value=0.0079 Score=58.54 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=25.7
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCC
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~ 88 (954)
-+...+|.+.|.-||||||+++.+++.+|+
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345589999999999999999999999984
No 369
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.14 E-value=0.0046 Score=65.06 Aligned_cols=38 Identities=39% Similarity=0.682 Sum_probs=32.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG 99 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~ 99 (954)
|.+|.+.||+|+||||.+..||..+. +.+|++|.|+-+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 68999999999999999999998773 678999988653
No 370
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.06 E-value=0.012 Score=64.79 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=34.5
Q ss_pred eEEEEEcChhHHHHHHHhcCccccccccchh-hHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 631 LWIAVVGGVHSHLISRVQRDKSRMGCFMSQN-DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 631 ~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~-q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
..+|++++.++-+.|.-.- +|...+... ..... ...+.+.++|-++.||++|+...
T Consensus 84 ~ilFLdA~d~~LirRy~eT---RR~HPL~~~~~~le~-I~~Er~~L~~lr~~Ad~vIDTs~ 140 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSET---RRRHPLSSDGSLLEA-IEKERELLEPLRERADLVIDTSN 140 (284)
T ss_pred EEEEEECChHHHHHHHHhc---cCCCCCCCCCCcHHH-HHHHHHHHHHHHHhCCEEEECCC
Confidence 4679999988777775431 122222211 11222 34566777888999999998763
No 371
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.05 E-value=0.038 Score=59.82 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=37.8
Q ss_pred EEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhhhccCCCcCcccEEEECCCCC
Q 002197 171 IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVS 229 (954)
Q Consensus 171 ~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~Iep~~~~ADiII~N~~~~ 229 (954)
-++|++|+.++-+.|.-.-...-.-+.......-...++++++|-+..||.||+.+-.+
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls 143 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELS 143 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCC
Confidence 45799999988877764322111111111122233567788899999999999998554
No 372
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.04 E-value=0.0045 Score=62.62 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=23.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
|+|+|++|+|||||++.|++. |+.++ +.+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 789999999999999999998 88877 666654
No 373
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.04 E-value=0.0058 Score=63.00 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
..+.+|+|+|++|||||||++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 4577999999999999999999987763
No 374
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.01 E-value=0.0057 Score=71.61 Aligned_cols=39 Identities=38% Similarity=0.500 Sum_probs=34.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc-eeccccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYFK 553 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~-vIs~Ddfy~ 553 (954)
.+|.+|.+.|++||||||+|..|+..+|+. +++.|.+-.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 469999999999999999999999999986 789987643
No 375
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.0075 Score=69.09 Aligned_cols=118 Identities=13% Similarity=0.068 Sum_probs=86.3
Q ss_pred ccccccceeccccCCCCcccccccCCceeEeeeCCeEEEEEcce-eccCCCccccceeEEEeeh---hH----------H
Q 002197 256 NEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQ-RIVDKNFIIRPKAEFEVGR---MT----------L 321 (954)
Q Consensus 256 ~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~~~~ltyKgp-~i~~~~~~~k~r~E~ev~v---~~----------~ 321 (954)
.....++||+.|.+..+..+-.| |||+.++++.+|.|-- +..++. -.|.|+++.+ .. .
T Consensus 33 ~~~L~n~YyDTpd~~L~~~~~gL-----RIR~~~~~y~~TlKtaG~v~gGl---H~RpEyn~~L~~~~~~~~~~p~~~~p 104 (432)
T COG3025 33 PQQLANIYYDTPDNWLRRHDMGL-----RIRREGGQYEQTLKTAGGVVGGL---HQRPEYNVPLPEDTLDLAELPRDRWP 104 (432)
T ss_pred hhhHhhhhcCCchHHHHhCCceE-----EEeccCCeEEEEEEecCcccccc---ccCccccccCCCCCcchhhChhhhcc
Confidence 45567999999999999999999 9999999999999944 333344 5899999998 11 0
Q ss_pred -HH---HHhcCCceeEEEEEEEEEEEe--C--CEEEEEecCC----CCCCCeEEEEec----ChhHHHHHHHHcCC
Q 002197 322 -GG---LLDLGYSVVASYKRASTYVVY--G--NLSVSFETID----TLDETFMVLRGT----NRKTVGAEALRMGI 381 (954)
Q Consensus 322 -~~---L~~LGf~~~~~v~K~R~~~~~--~--~~~i~lD~v~----~lG~~FvEiE~~----~~~~v~~~a~~Lgl 381 (954)
++ ....--+|+++.+=.|+.|.+ | .++|+||... +.-.|+-|||-. +...+.++|+.|-.
T Consensus 105 ~~~~~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Age~q~picElElELKsG~~~aL~~la~~L~~ 180 (432)
T COG3025 105 AGIFPLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAGERQEPICELELELKSGTPQALLALARTLAE 180 (432)
T ss_pred cccCCcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccCcccCchhheehhhhcCCHHHHHHHHHHHHH
Confidence 11 123345789999999999964 3 5788999876 445556666654 45666666666543
No 376
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.019 Score=63.63 Aligned_cols=35 Identities=34% Similarity=0.565 Sum_probs=29.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
++|.+.||+|+|||+||++||+.|.+. ..|.||++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~~ 212 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYKG 212 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheee--ecCccccc
Confidence 689999999999999999999988654 45666664
No 377
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.95 E-value=0.0071 Score=70.64 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=32.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy 552 (954)
++|.+|++.|++||||||+|.+||..+ | +.++++|.|-
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 457899999999999999999999876 3 6688888665
No 378
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=95.94 E-value=0.046 Score=57.87 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=63.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC------CeEEeccccccccccCC-CCCcccHHHHHHHHHhhhcCCccccccchh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg------~~VIs~Dd~y~~~~~~~-~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~ 134 (954)
|.+|.|+|-++|||||.|+.|++.|. ...|.-|. ..+..... ..++-+...++..|..-.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de-slg~~~ns~y~~s~~EK~lRg~L~S~v------------ 67 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE-SLGIEKNSNYGDSQAEKALRGKLRSAV------------ 67 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh-hcCCCCcccccccHHHHHHHHHHHHHH------------
Confidence 56899999999999999999998883 22233332 12222211 122333444554443211
Q ss_pred hhhccccccccccCCCcEEEEEecccch---------hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 135 QQKNRIGSKVIKGASSGVVIVDGTYALD---------ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~ll~---------~~l~~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.......++||+|...-.. .....-.-++|+..+|.+.+..+--.|..
T Consensus 68 ---------~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~ 124 (281)
T KOG3062|consen 68 ---------DRSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERED 124 (281)
T ss_pred ---------HhhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCC
Confidence 1123446788888755432 11112233778999999999888766543
No 379
>PHA03132 thymidine kinase; Provisional
Probab=95.93 E-value=0.056 Score=65.24 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEe
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs 92 (954)
.++|.|-|+.||||||+++.|++.+|..++-
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~ 287 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLV 287 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceEE
Confidence 5899999999999999999999988544443
No 380
>PRK13974 thymidylate kinase; Provisional
Probab=95.92 E-value=0.032 Score=59.25 Aligned_cols=45 Identities=9% Similarity=-0.058 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhchhhhhcc
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHI 212 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~v~p~~~~~I 212 (954)
..|+++|+++|+++.+.|...|....- .....+.++..+.|..|.
T Consensus 134 ~pd~~i~ld~~~~~~~~R~~~R~dD~~e~~~~~y~~~v~~~y~~y~ 179 (212)
T PRK13974 134 SPDLTFFLEISVEESIRRRKNRKPDRIEAEGIEFLERVAEGFALIA 179 (212)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcccCchhhhhHHHHHHHHHHHHHHH
Confidence 379999999999999999877632111 122345566677777653
No 381
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.89 E-value=0.009 Score=60.70 Aligned_cols=48 Identities=33% Similarity=0.494 Sum_probs=31.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccc---cccccccCCCCCcccHHHHHHHHHh
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMEN---YRVGVDEGNDLDSIDFDALVQNLQD 120 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd---~y~~~~~~~~p~s~D~~~l~~~L~~ 120 (954)
.|+|+||||||||||-+.++.. ++.|+ ++++ ....+++.+.+++.+.-
T Consensus 31 ~iaitGPSG~GKStllk~va~L-----isp~~G~l~f~G----e~vs~~~pea~Rq~VsY 81 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL-----ISPTSGTLLFEG----EDVSTLKPEAYRQQVSY 81 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc-----cCCCCceEEEcC----ccccccChHHHHHHHHH
Confidence 5999999999999999999764 33333 2222 23345555666655543
No 382
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.89 E-value=0.0065 Score=67.91 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=32.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc--cch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf--y~~ 554 (954)
+.+|.|.||+|||||.||-.||+. +..+||.|+. |+.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ 42 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKE 42 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCC
Confidence 348899999999999999999998 5699999976 664
No 383
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.85 E-value=0.0068 Score=62.49 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
++|.|.|+.||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999988
No 384
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.0079 Score=60.73 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=29.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.++-|+|+|++|+||||++.++++.|.-.-+....||-+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 467899999999999999999998874333344455543
No 385
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.84 E-value=0.0071 Score=57.25 Aligned_cols=25 Identities=48% Similarity=0.741 Sum_probs=22.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
..+.|.||+||||||+++.|+..++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4688999999999999999998875
No 386
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.83 E-value=0.016 Score=64.48 Aligned_cols=38 Identities=37% Similarity=0.628 Sum_probs=31.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh----C---CeEEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L----g---~~VIs~Dd~y~ 98 (954)
++.+|+|+||+||||||++..|+..+ | +.+|++|.|.-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 46799999999999999999998755 3 56899998653
No 387
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.82 E-value=0.0082 Score=66.71 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=31.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C---Cceeccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFK 553 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L----g---~~vIs~Ddfy~ 553 (954)
++.+|++.||+||||||++..|+..+ | +.+|++|.|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 46799999999999999999998755 3 56889998754
No 388
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.82 E-value=0.01 Score=66.42 Aligned_cols=46 Identities=28% Similarity=0.527 Sum_probs=35.7
Q ss_pred HHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccc
Q 002197 52 IQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (954)
Q Consensus 52 i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y 97 (954)
+.......+.+.+|+|+|++||||||++..|+..+ | +.+|+.|...
T Consensus 24 ~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 24 LDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred HHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 33333456678999999999999999999998766 3 6678888643
No 389
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.0064 Score=63.53 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=25.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC---Cceeccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLE 549 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg---~~vIs~D 549 (954)
.+|.++|++||||||+|+.|+..|. ..+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 3677899999999999999999883 4555544
No 390
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.82 E-value=0.0068 Score=61.56 Aligned_cols=22 Identities=41% Similarity=0.794 Sum_probs=20.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHH
Q 002197 519 IVGIGGPSGSGKTSLAHKMANI 540 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~ 540 (954)
.|+|+||||||||||-+.++..
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 6889999999999999999874
No 391
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.81 E-value=0.0089 Score=61.61 Aligned_cols=29 Identities=38% Similarity=0.433 Sum_probs=25.2
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
...+.+|+|+|++|||||||++.|...|.
T Consensus 3 ~~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 3 KTMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 34678999999999999999999987774
No 392
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.044 Score=58.24 Aligned_cols=59 Identities=10% Similarity=-0.061 Sum_probs=37.1
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccC-Cc-cCHH-HHHHhhchhhhhccCCCcCcccEEEECCC
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIG-DS-CSLD-SLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~-~r-~~~e-~~~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
.-|+++|+|+|+++.+.|...|... .+ ...+ .+.+.+...|.+..+.... .=++|+++.
T Consensus 127 ~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~~ 188 (208)
T COG0125 127 KPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPE-RIIVIDASR 188 (208)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECCC
Confidence 4599999999999999999998665 44 2221 2455555555553322222 225566663
No 393
>PRK06761 hypothetical protein; Provisional
Probab=95.79 E-value=0.012 Score=65.23 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceecccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd 550 (954)
.+|.|+|++||||||+++.|++.++...++.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 478999999999999999999998754444443
No 394
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.0087 Score=64.26 Aligned_cols=39 Identities=38% Similarity=0.630 Sum_probs=34.0
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCc-eeccccc
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESY 551 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~-vIs~Ddf 551 (954)
+...|.||.|.|+||.||||+|..||..||+. +++.|..
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I 124 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI 124 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence 45679999999999999999999999999976 6777744
No 395
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.77 E-value=0.0095 Score=56.35 Aligned_cols=26 Identities=50% Similarity=0.663 Sum_probs=23.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCC
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGC 88 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~ 88 (954)
..+.|.||+||||||+++.++..++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999998864
No 396
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.77 E-value=0.016 Score=69.45 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEec
Q 002197 44 GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (954)
Q Consensus 44 ~~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~ 93 (954)
....+-..++..........++.++||+||||||+.+.|++.+|+.|+..
T Consensus 27 Kv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 27 KVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 34445555555444444557999999999999999999999999887764
No 397
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.74 E-value=0.0094 Score=61.29 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=24.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
.+|.|+|++||||||+|..|+..++..++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~ 30 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVL 30 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 36999999999999999999998775443
No 398
>PRK13976 thymidylate kinase; Provisional
Probab=95.74 E-value=0.039 Score=58.69 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
+.|+|-|.-||||||+++.|++.|.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999884
No 399
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.73 E-value=0.012 Score=64.98 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=32.9
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecccccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~ 98 (954)
.+++.+|+++|++|+||||++..|+..+ | +.++++|-|..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 3457899999999999999999998777 3 56789997644
No 400
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.73 E-value=0.0099 Score=66.62 Aligned_cols=41 Identities=27% Similarity=0.453 Sum_probs=33.8
Q ss_pred HcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceecccccc
Q 002197 512 ENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (954)
Q Consensus 512 ~~~~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy 552 (954)
...+.+.+|+|+|++|||||||+..|+..+ | +.++++|..+
T Consensus 29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345678999999999999999999998865 2 6688888655
No 401
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.01 Score=59.95 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
.++.|+|||++|+||||++..+++.|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 467899999999999999999998873
No 402
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.72 E-value=0.01 Score=62.62 Aligned_cols=36 Identities=33% Similarity=0.675 Sum_probs=28.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC----Cceecccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYF 552 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg----~~vIs~Ddfy 552 (954)
|+.|||+|++||||||+.+.+...+. +.++..|-++
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT 40 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC
Confidence 67899999999999999999988753 4455555444
No 403
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.71 E-value=0.018 Score=65.54 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=31.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
-+.|.++||-||+|+|||.+|+.+++.+|+..|.++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 467899999999999999999999999998766554
No 404
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.68 E-value=0.018 Score=66.25 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.9
Q ss_pred EeeeCCCCccHHHHHHHHHHHh
Q 002197 520 VGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~L 541 (954)
|.|+|++|+||||||++||+.+
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHH
Confidence 6679999999999999999964
No 405
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.67 E-value=0.014 Score=56.91 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~ 543 (954)
+..-+|.+.|+-|||||||++.++..+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45679999999999999999999999974
No 406
>PRK06761 hypothetical protein; Provisional
Probab=95.64 E-value=0.019 Score=63.76 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=27.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~ 96 (954)
.+|.|+|++||||||+++.|++.++..-++.+.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~ 37 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY 37 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence 5899999999999999999999987544444443
No 407
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.62 E-value=0.033 Score=68.86 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~ 553 (954)
..++.+|.++|.+||||||+|+.|++.|+ +.+++.|++..
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 44689999999999999999999999873 56788888865
No 408
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.58 E-value=0.023 Score=64.28 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=31.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y 97 (954)
.++.+|++.|++||||||++..|+..+ | +.++++|-|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 357899999999999999999999877 2 5667777654
No 409
>PRK10646 ADP-binding protein; Provisional
Probab=95.57 E-value=0.028 Score=56.73 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=25.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCC
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~ 88 (954)
....+|.+.|.-||||||+++.|++.||+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33468999999999999999999999985
No 410
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.56 E-value=0.011 Score=61.69 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=23.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
..+|.|.|+.||||||+++.|++.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 411
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.56 E-value=0.012 Score=65.18 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy~ 553 (954)
.+++.+|++.|++|+||||++..|+..+ | +.++++|-|..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 3457899999999999999999999876 3 56788887644
No 412
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.55 E-value=0.011 Score=63.08 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=27.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeE-Eeccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTL-ISMEN 95 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~V-Is~Dd 95 (954)
++|||+|.+||||||+|+.+.+ .|.++ +++.+
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d 33 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLAD 33 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhH
Confidence 3899999999999999999977 46666 77765
No 413
>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.024 Score=55.54 Aligned_cols=91 Identities=14% Similarity=0.055 Sum_probs=67.9
Q ss_pred eEeeeCCeEEEEEcceeccCCCccccceeEEEeehhHHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEecCCCCCC--Ce
Q 002197 284 KMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDE--TF 361 (954)
Q Consensus 284 RiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v~~~~~L~~LGf~~~~~v~K~R~~~~~~~~~i~lD~v~~lG~--~F 361 (954)
|||..|.+.+||+||+. .+ -+|.|||-.+-+....+.|-+.+...++|+|-..+.+|++-.+|...|--. .-
T Consensus 40 RVRi~g~~A~LTiK~~~---~~---~~R~EfEY~iPl~DA~e~l~~~~g~~IEK~R~~v~~~G~~wEVDvF~G~n~gLvv 113 (156)
T COG2954 40 RVRIVGDRAYLTIKGGA---SG---LSRSEFEYEIPLADAEEMLTTACGRVIEKTRYPVRHGGFLWEVDVFLGDNAGLVV 113 (156)
T ss_pred EEEEecceEEEEEEccc---cc---eeeeeeeecccccCHHHHHHHhcchheeeeEeeeeeCCEEEEEeeecCcccceEE
Confidence 99999999999999754 33 589999999944444444445566689999999999999999999885433 35
Q ss_pred EEEEecChhHHHHHHHHcC
Q 002197 362 MVLRGTNRKTVGAEALRMG 380 (954)
Q Consensus 362 vEiE~~~~~~v~~~a~~Lg 380 (954)
.|+|-.++.+-..+-..||
T Consensus 114 AEvEl~~e~~~~~lP~WLG 132 (156)
T COG2954 114 AEVELPDENADFDLPDWLG 132 (156)
T ss_pred EEEEcCccccCCcCccccC
Confidence 6888765555455555566
No 414
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.49 E-value=0.0075 Score=65.37 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=21.6
Q ss_pred eeCCCCccHHHHHHHHHHHhC-----Cceeccc
Q 002197 522 IGGPSGSGKTSLAHKMANIVG-----CEVVSLE 549 (954)
Q Consensus 522 IsGpsGSGKTTlA~~La~~Lg-----~~vIs~D 549 (954)
|.||+||||||+|+.+.+.+. +.+|.+|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 579999999999999999874 4566666
No 415
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.47 E-value=0.014 Score=68.07 Aligned_cols=34 Identities=35% Similarity=0.320 Sum_probs=29.1
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEe
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs 92 (954)
...+..|+|+|++|||||||++.|++.+|...+.
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4456889999999999999999999998876543
No 416
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.46 E-value=0.013 Score=66.33 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=31.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy 552 (954)
+++.+|++.||+||||||++..|+..+ | +.++.+|-|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 457899999999999999999999876 2 5567777653
No 417
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.46 E-value=0.028 Score=53.78 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=23.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
....+.|.|++|+||||+++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999999887
No 418
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.40 E-value=0.013 Score=60.28 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCE 544 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~ 544 (954)
+|.|+|++||||||+|..|+..++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC
Confidence 68899999999999999999887643
No 419
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.39 E-value=0.0097 Score=58.86 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378899999999999999998754
No 420
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.39 E-value=0.028 Score=59.98 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh-----CCeEEecccc
Q 002197 46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENY 96 (954)
Q Consensus 46 ~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~L-----g~~VIs~Dd~ 96 (954)
..++..++...........+.|.|++|||||++|+.++... .+.++++..+
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 34555555554433344568899999999999999998876 3556666553
No 421
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.39 E-value=0.05 Score=56.19 Aligned_cols=57 Identities=7% Similarity=-0.084 Sum_probs=35.3
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCc--cCHHHHHHhhchhhhhccCCCcCcccEEEECC
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~~r--~~~e~~~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
.-|+.+|+++++++.+.|...|+.... .....+..++...|.+... ...-=+||+++
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~l~~--~~~~~~iid~~ 176 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAYLELAK--DPNNWVIIDAS 176 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHHHHHHH--TTTTEEEEETT
T ss_pred CCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHc--CCCCEEEEECC
Confidence 569999999999999999999987222 2333445555555555332 11222455555
No 422
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.34 E-value=0.016 Score=67.65 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=33.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~ 98 (954)
.++.+|+++|++||||||++..||..+ | +.++++|.|..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 457899999999999999999999776 4 67889998753
No 423
>PRK14974 cell division protein FtsY; Provisional
Probab=95.33 E-value=0.015 Score=66.24 Aligned_cols=38 Identities=32% Similarity=0.580 Sum_probs=30.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddf 551 (954)
.++|.+|+++|++||||||++.+|+..+ | +.++..|-|
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3468999999999999999999988765 3 445666655
No 424
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.33 E-value=0.016 Score=61.22 Aligned_cols=34 Identities=41% Similarity=0.613 Sum_probs=28.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf 551 (954)
.++.|.||+|+|||.+|-.||+.+|+++|+.|..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 4788999999999999999999999999999987
No 425
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.31 E-value=0.022 Score=59.26 Aligned_cols=37 Identities=38% Similarity=0.707 Sum_probs=30.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh----CCeEEecccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRV 98 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L----g~~VIs~Dd~y~ 98 (954)
++.|++.||+|||||||...+.+.| .+.||.-|-|..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~ 53 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTK 53 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeech
Confidence 5999999999999999987766655 578888887753
No 426
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.29 E-value=0.012 Score=58.20 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998764
No 427
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.016 Score=66.76 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=31.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy 552 (954)
++|.+|++.||.||||||++.+|+..+ | +.++++|.|-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 356799999999999999999999766 2 5678888764
No 428
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.29 E-value=0.023 Score=54.34 Aligned_cols=25 Identities=44% Similarity=0.670 Sum_probs=22.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
...+.|.|++|+||||+++.++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4467789999999999999999887
No 429
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.28 E-value=0.051 Score=65.17 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=29.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
.+.=|.+.||+|||||++|+.++..++++++..+
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 3456899999999999999999999988877655
No 430
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.27 E-value=0.014 Score=59.58 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=28.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---C--Cceecccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy 552 (954)
++++.|++||||||++..++..+ | +.++++|.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 68899999999999999998875 3 5678888754
No 431
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.19 E-value=0.021 Score=56.03 Aligned_cols=26 Identities=46% Similarity=0.787 Sum_probs=23.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeE
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTL 90 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~V 90 (954)
|.|.|++|+|||++++.+++.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 67999999999999999999997554
No 432
>PRK10867 signal recognition particle protein; Provisional
Probab=95.18 E-value=0.019 Score=67.39 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=31.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh----C--Cceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESYF 552 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L----g--~~vIs~Ddfy 552 (954)
++|.+|.++|++||||||+|..||..+ | +.++++|.|-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 458899999999999999999988755 3 5688888754
No 433
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.18 E-value=0.027 Score=64.93 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=31.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y 97 (954)
+++.+|++.|+.||||||++..|+..+ | +.++++|.|.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 346799999999999999999998766 2 5678988764
No 434
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.17 E-value=0.02 Score=58.46 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=29.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---C--CeEEecccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~ 98 (954)
+++++|++||||||++..++..+ | +.++++|.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 78999999999999999998776 3 56788887543
No 435
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.15 E-value=0.032 Score=63.68 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=32.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
.+.|.+++|-||+|+|||.+|+++++.+|+.+|.++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa 181 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSA 181 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH
Confidence 4568999999999999999999999999988766654
No 436
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.17 Score=51.30 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=72.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCC----eEEecccccccccc-CCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGC----TLISMENYRVGVDE-GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~----~VIs~Dd~y~~~~~-~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
..|.+.||||+||-|+-......+.. .++. --+-++-+. ..+.++.+...+.+.-. .|.- .++|..+
T Consensus 6 ~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvr-RvITRpa~ag~EdH~avs~~eF~~~a~---~g~F----AlsWqAh 77 (192)
T COG3709 6 RLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVR-RVITRPADAGGEDHDALSEAEFNTRAG---QGAF----ALSWQAH 77 (192)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhccCCceEEEE-EEecccCCCCcccccccCHHHHHHHhh---cCce----eEEehhc
Confidence 68999999999999999999887742 1111 000111111 12333444333332111 1110 0111111
Q ss_pred cc---cc-ccccccCCCcEEEEEecccchhhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhh
Q 002197 138 NR---IG-SKVIKGASSGVVIVDGTYALDARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSI 204 (954)
Q Consensus 138 ~~---~~-~~~~~~~~~~vVIvEG~~ll~~~l~~~~-D-~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v 204 (954)
.- ++ ..........++|+-|.-..-+..+..+ + +++.|.+++++-.+|...|-. ++.+++..+.
T Consensus 78 GL~Ygip~eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGR---Es~eeI~aRL 147 (192)
T COG3709 78 GLSYGIPAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGR---ESREEILARL 147 (192)
T ss_pred CccccCchhHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhcc---CCHHHHHHHH
Confidence 11 00 0011124467999999998887666433 4 567889999999888888853 5566665554
No 437
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.13 E-value=0.014 Score=63.26 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=22.8
Q ss_pred EECCCCCcHHHHHHHHHHHhC-----CeEEeccc
Q 002197 67 IGGPSGSGKTSLAEKLASVIG-----CTLISMEN 95 (954)
Q Consensus 67 ItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd 95 (954)
|.||+||||||+++.+++.+. +.+|++|=
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 689999999999999999884 56788774
No 438
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.11 E-value=0.014 Score=62.61 Aligned_cols=24 Identities=46% Similarity=0.666 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.|+||||||||++.|+-..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 478999999999999999997543
No 439
>PRK14974 cell division protein FtsY; Provisional
Probab=95.10 E-value=0.021 Score=64.93 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=30.9
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecccccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~ 98 (954)
..++.+|+++|++||||||++..|+..+ | +.++++|-|..
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 3458999999999999999888888765 3 44577776543
No 440
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.10 E-value=0.02 Score=67.10 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=31.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh----C--Cceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESYF 552 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L----g--~~vIs~Ddfy 552 (954)
++|.+|.++|++||||||+|..||..+ | +.++++|-|-
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 458899999999999999999998764 2 6678888743
No 441
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.059 Score=57.28 Aligned_cols=61 Identities=11% Similarity=-0.025 Sum_probs=37.6
Q ss_pred cCCeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhhhhcccccCcccEEEcCC
Q 002197 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
.-|+.+|++.|++..+.|...|.............+...++..|......... .=++|+.+
T Consensus 127 ~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~ 187 (208)
T COG0125 127 KPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPE-RIIVIDAS 187 (208)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECC
Confidence 45899999999999999998886441111111124566777777777543322 22445544
No 442
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.09 E-value=0.018 Score=66.99 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=27.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCce
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~v 545 (954)
..-...|+|.|++|||||||++.|++.+|...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 34567899999999999999999999988654
No 443
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.06 E-value=0.1 Score=46.61 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=25.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEecc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISME 94 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g~~VIs~D 94 (954)
+|.++|..|+||||++..|+..+ |..++-.|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 47899999999999999999877 45555555
No 444
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.06 E-value=0.016 Score=54.98 Aligned_cols=33 Identities=33% Similarity=0.248 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf 551 (954)
--+++|.||||||||||++.+. -|...+.-||.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 4678999999999999999986 23333444444
No 445
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.05 E-value=0.035 Score=59.32 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=30.6
Q ss_pred HHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCceeccccc
Q 002197 506 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESY 551 (954)
Q Consensus 506 ~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~L-----g~~vIs~Ddf 551 (954)
.++...........+.|.|++|+|||++|+.++..+ .+.++++.++
T Consensus 31 ~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 31 RLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred HHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 344443322233456789999999999999999876 3455555544
No 446
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.02 E-value=0.029 Score=59.18 Aligned_cols=35 Identities=37% Similarity=0.692 Sum_probs=27.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC----CeEEecccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENY 96 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg----~~VIs~Dd~ 96 (954)
|+.|+|+|+.||||||+.+.+...+. +.++..|.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~ 39 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIY 39 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcC
Confidence 57899999999999999999987653 445555543
No 447
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.02 E-value=0.048 Score=58.33 Aligned_cols=52 Identities=29% Similarity=0.404 Sum_probs=32.7
Q ss_pred chhh--hHHHHHHHHHHHH----hcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 40 SFDH--GYYLLVKSIQELR----EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 40 s~d~--~~~~lv~~i~~~~----~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
+|++ +-..++..+.-.. .+.....-+.+.||+|+||||+|..+|+.+|+.+.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 3555 4445555443322 23344567899999999999999999999997653
No 448
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.02 E-value=0.051 Score=54.41 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=26.8
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 58 ~~~~~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
.-...-+|.+.|.-|||||||++.+++.||
T Consensus 21 ~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 21 ALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred hCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 345568999999999999999999999998
No 449
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.033 Score=64.78 Aligned_cols=38 Identities=42% Similarity=0.605 Sum_probs=31.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh----C--CeEEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L----g--~~VIs~Dd~y~ 98 (954)
++.+|+++|++||||||++..|+..+ | +.++++|.|.-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 46799999999999999999999754 3 56788887643
No 450
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.98 E-value=0.078 Score=51.78 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHh--cCCCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 46 YLLVKSIQELRE--KKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 46 ~~lv~~i~~~~~--~~~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
..++++|..... +.++|+++.+-|++|+|||.+++.||+.+
T Consensus 35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 35 EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 345666666654 46688999999999999999999999986
No 451
>COG0645 Predicted kinase [General function prediction only]
Probab=94.97 E-value=0.02 Score=58.32 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=33.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.++.+.|.+||||||+|..|++.+|+..|+.|..-+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~ 38 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKR 38 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHH
Confidence 4677899999999999999999999999999988664
No 452
>PF13173 AAA_14: AAA domain
Probab=94.95 E-value=0.026 Score=54.88 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC----Cceeccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFK 553 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg----~~vIs~Ddfy~ 553 (954)
.++.|.||.|+||||+++.+++.+. +..+++|+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 4788999999999999999998764 55666666543
No 453
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.95 E-value=0.018 Score=61.81 Aligned_cols=24 Identities=54% Similarity=0.697 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-++||.|.|||||||+++.|+-..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 579999999999999999997643
No 454
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.94 E-value=0.019 Score=61.29 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=27.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCce-eccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEV-VSLESYFK 553 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~v-Is~Ddfy~ 553 (954)
++|||+|.+||||||+|+.+.+ .|..+ ++|-|--+
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik 36 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIK 36 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHH
Confidence 4899999999999999999876 45555 77665544
No 455
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.019 Score=66.80 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=30.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C--Cceecccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESYF 552 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L----g--~~vIs~Ddfy 552 (954)
++.+|++.||+||||||++..|+..+ | +.++++|-|-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 46789999999999999999999754 2 5677887654
No 456
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.94 E-value=0.017 Score=61.06 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=19.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHH
Q 002197 518 VIVGIGGPSGSGKTSLAHKMAN 539 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~ 539 (954)
-+|.|.||||||||||.+.|..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4788899999999999999854
No 457
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.054 Score=62.82 Aligned_cols=39 Identities=33% Similarity=0.547 Sum_probs=32.3
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---------CCeEEecccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---------GCTLISMENYRV 98 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L---------g~~VIs~Dd~y~ 98 (954)
.++.+|.+.|++|+||||++..||..+ .+.++++|.|.-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 346899999999999999999998765 266899998743
No 458
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.88 E-value=0.027 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+..|+|++||||||+-.++.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999997654
No 459
>PRK10646 ADP-binding protein; Provisional
Probab=94.87 E-value=0.039 Score=55.73 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~ 543 (954)
...-+|.+.|.-|||||||++.|++.||+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34568999999999999999999999985
No 460
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.87 E-value=0.019 Score=61.62 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=20.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-+|+|.||||||||||-+.|....
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 479999999999999999987643
No 461
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.87 E-value=0.022 Score=66.91 Aligned_cols=37 Identities=35% Similarity=0.510 Sum_probs=31.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddf 551 (954)
.+|.+|.+.|++||||||+|..|+..+ | +.++++|.|
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 468899999999999999999999877 2 667888765
No 462
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.86 E-value=0.023 Score=55.73 Aligned_cols=26 Identities=46% Similarity=0.769 Sum_probs=22.6
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCce
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEV 545 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~v 545 (954)
|.|.||+|+|||++++.+++.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 56799999999999999999987443
No 463
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.86 E-value=0.027 Score=65.32 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=31.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
|.-|.+.||+||||||+|+.|++.+++++++.|.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 4678999999999999999999999999999995
No 464
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.85 E-value=0.026 Score=53.67 Aligned_cols=33 Identities=36% Similarity=0.294 Sum_probs=24.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~ 96 (954)
..+++|.|++||||||+++.+. -|...+..|+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 3679999999999999999986 23333444443
No 465
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.84 E-value=0.021 Score=59.97 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
+|.|+||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999877653
No 466
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.83 E-value=0.043 Score=54.94 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=26.5
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.-...-+|.+.|.=|||||||++.++..||
T Consensus 21 ~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 21 ALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred hCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 344567899999999999999999999997
No 467
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.026 Score=64.75 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy~ 553 (954)
.++.+|++.||+||||||++..|+..+ | +.++++|.|--
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 356799999999999999999999766 2 66899998854
No 468
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.026 Score=65.42 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=32.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---------CCceeccccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---------GCEVVSLESYFK 553 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L---------g~~vIs~Ddfy~ 553 (954)
.+|.+|.+.||+|+||||++.+|+..+ .+.++++|.|.-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 457899999999999999999999765 266899998743
No 469
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.79 E-value=0.026 Score=65.58 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=31.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
|.-|.+.||+||||||+|+.|++.++++++..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 5678999999999999999999999999988886
No 470
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.76 E-value=0.023 Score=56.56 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+|+|.|+++||||||++.|.+.|
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998876
No 471
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.72 E-value=0.063 Score=64.13 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
+.|.-|.+.||+|||||.+|+.++..+|.+++..|.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 346779999999999999999999999988876654
No 472
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.72 E-value=0.03 Score=57.02 Aligned_cols=25 Identities=48% Similarity=0.701 Sum_probs=23.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
|.+|+|+|++||||||++..|...+
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999877
No 473
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.66 E-value=0.049 Score=65.49 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=27.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcee
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 546 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vI 546 (954)
....++.++||+||||||+.+.|++.+|..++
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 34568889999999999999999999996655
No 474
>PRK09087 hypothetical protein; Validated
Probab=94.64 E-value=0.023 Score=61.13 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=29.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
.+.|.||+|||||+|++.+++..++.+++.++|-.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~ 80 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS 80 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence 36789999999999999999888888888875544
No 475
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.64 E-value=0.026 Score=65.18 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=25.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.+|.+|+|+|++|||||||+..|...|.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999998775
No 476
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.64 E-value=0.064 Score=59.84 Aligned_cols=32 Identities=34% Similarity=0.546 Sum_probs=26.3
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeE
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTL 90 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~V 90 (954)
...+..+.+.||+|+|||++|+.+++.++..+
T Consensus 27 ~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 27 QEALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34455678999999999999999999987543
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.63 E-value=0.037 Score=47.33 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L 86 (954)
+..|+|++||||||+-.++.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999997655
No 478
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.061 Score=61.97 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=38.2
Q ss_pred chhh--hHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCe
Q 002197 40 SFDH--GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCT 89 (954)
Q Consensus 40 s~d~--~~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~ 89 (954)
+|++ +-..+++.+........-+-.+.++||+|+||||+|+.+++.++|.
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 4555 4456666666665555556778999999999999999999998763
No 479
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.63 E-value=0.03 Score=56.99 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=22.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.+|+|+|++||||||++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 480
>PRK10867 signal recognition particle protein; Provisional
Probab=94.62 E-value=0.041 Score=64.63 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh----C--CeEEecccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRV 98 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L----g--~~VIs~Dd~y~ 98 (954)
++|.+|.++|++||||||+|..||..+ | +.+|++|.|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 458999999999999999888887654 3 56899998644
No 481
>PRK13768 GTPase; Provisional
Probab=94.59 E-value=0.036 Score=60.69 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=28.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN 95 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd 95 (954)
+++|.|+|+.||||||++..++..+ | +.+|+.|-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 5789999999999999999998776 3 56788875
No 482
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.55 E-value=0.048 Score=56.19 Aligned_cols=37 Identities=41% Similarity=0.575 Sum_probs=28.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCC----eE--Eecccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGC----TL--ISMENYRV 98 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~----~V--Is~Dd~y~ 98 (954)
...+.++||+|+|||.+|+.|++.+.. ++ +++-.|-.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 467899999999999999999999985 44 45444533
No 483
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.54 E-value=0.03 Score=64.51 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 002197 65 VGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~L 86 (954)
|.|+|++|+||||||++||+.+
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHH
Confidence 8999999999999999999966
No 484
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.53 E-value=0.027 Score=59.61 Aligned_cols=23 Identities=48% Similarity=0.518 Sum_probs=20.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHH
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLAS 84 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~ 84 (954)
--+|.|.|||||||||+-+.|..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35899999999999999999943
No 485
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=94.53 E-value=0.034 Score=57.42 Aligned_cols=48 Identities=10% Similarity=-0.037 Sum_probs=32.4
Q ss_pred cCCeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhhhhcc
Q 002197 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIE 676 (954)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~Ie 676 (954)
.-|+.+|+++++++.+.|...|+.. .....+...+...++..|.+...
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~~-~~~~~~~~~~~~~~~~~y~~l~~ 165 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGEK-DDEEEEDLEYLRRVREAYLELAK 165 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSST-TTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCcc-chHHHHHHHHHHHHHHHHHHHHc
Confidence 5599999999999999999998761 11112223556666666766653
No 486
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.52 E-value=0.037 Score=62.83 Aligned_cols=30 Identities=40% Similarity=0.522 Sum_probs=26.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
...|+|.|++|||||||++.|+..+|..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 358999999999999999999998887764
No 487
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.51 E-value=0.067 Score=60.67 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=27.5
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
...+..+.|.||+|+||||+|+.+++.++..+.
T Consensus 48 ~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 48 GEALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 344557889999999999999999999986543
No 488
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.50 E-value=0.061 Score=60.34 Aligned_cols=39 Identities=26% Similarity=0.505 Sum_probs=29.6
Q ss_pred HHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 002197 506 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE 544 (954)
Q Consensus 506 ~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~ 544 (954)
.+.....+..-|.++.+.||+|+||||+|+.+++.++..
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~ 70 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE 70 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc
Confidence 334444444456788889999999999999999987643
No 489
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.50 E-value=0.045 Score=58.58 Aligned_cols=28 Identities=39% Similarity=0.504 Sum_probs=22.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCce
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~v 545 (954)
.-+.+.||+|.||||||+.+|+.+++.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCe
Confidence 3467899999999999999999998654
No 490
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.49 E-value=0.064 Score=63.18 Aligned_cols=38 Identities=39% Similarity=0.511 Sum_probs=32.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y 97 (954)
.+|.+|.++|++||||||+|..|+..+ | +.++++|.|.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 468899999999999999999999877 3 6678888763
No 491
>PF13173 AAA_14: AAA domain
Probab=94.48 E-value=0.046 Score=53.14 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=28.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC----CeEEecccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENY 96 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg----~~VIs~Dd~ 96 (954)
..++.|.|+-||||||+++.+++.+. +..+++|+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 35799999999999999999998764 566777664
No 492
>PRK13768 GTPase; Provisional
Probab=94.45 E-value=0.036 Score=60.65 Aligned_cols=33 Identities=36% Similarity=0.579 Sum_probs=27.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLE 549 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~D 549 (954)
+++|.|+|++||||||++..++..+ | +.++++|
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 4689999999999999999998776 2 5577776
No 493
>PHA02624 large T antigen; Provisional
Probab=94.43 E-value=0.078 Score=63.95 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEec
Q 002197 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (954)
Q Consensus 48 lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~ 93 (954)
+...++......++...|.+.||+|||||||+..|.+.||..+++.
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 4445555566777888999999999999999999999997666665
No 494
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.03 Score=62.13 Aligned_cols=36 Identities=31% Similarity=0.600 Sum_probs=29.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
-.+|.+.||+|.|||+||++||+.|.+. ..|.||+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~~ 212 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYKG 212 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee--ecCccccc
Confidence 4678999999999999999999988654 45667765
No 495
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.42 E-value=0.028 Score=57.24 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=0.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+.|++|+|.++||||||..+|...|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
No 496
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.42 E-value=0.046 Score=55.06 Aligned_cols=33 Identities=39% Similarity=0.551 Sum_probs=27.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~ 96 (954)
.=|.|+|++|+||||+|..|.+ .|..+++-|..
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~-~g~~lvaDD~v 47 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIK-RGHRLVADDRV 47 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeEEECCEE
Confidence 4589999999999999999977 48877765553
No 497
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.41 E-value=0.032 Score=64.78 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=30.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceecccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd 550 (954)
|.-|.+.||+|+||||+|+.|+..+++.++..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4668899999999999999999999999888885
No 498
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.38 E-value=0.035 Score=58.39 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
+|.|+||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998877653
No 499
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.34 E-value=0.03 Score=56.71 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=21.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+|+|.|++|||||||+.+|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
No 500
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.32 E-value=0.032 Score=59.78 Aligned_cols=23 Identities=48% Similarity=0.679 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHH
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASV 85 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~ 85 (954)
-+|+|.||||||||||-+.+.-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999753
Done!