Query 002197
Match_columns 954
No_of_seqs 755 out of 3599
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 99.9 3E-26 1E-30 254.4 12.0 242 453-695 16-314 (321)
2 3tqc_A Pantothenate kinase; bi 99.9 5.5E-23 1.9E-27 228.2 16.7 198 32-229 43-311 (321)
3 3ghx_A Adenylate cyclase CYAB; 99.9 7.4E-22 2.5E-26 201.8 13.0 128 253-395 35-178 (179)
4 1sq5_A Pantothenate kinase; P- 99.8 5.2E-21 1.8E-25 211.6 12.6 176 515-691 78-298 (308)
5 1yem_A Hypothetical protein; s 99.8 5.6E-21 1.9E-25 195.2 11.7 134 250-399 30-176 (179)
6 2een_A Hypothetical protein PH 99.8 5.9E-21 2E-25 195.7 11.4 140 251-400 22-180 (183)
7 1a7j_A Phosphoribulokinase; tr 99.8 6.8E-21 2.3E-25 209.1 11.7 176 515-690 3-216 (290)
8 1uj2_A Uridine-cytidine kinase 99.8 2.5E-20 8.4E-25 199.9 14.8 172 514-687 19-211 (252)
9 3n10_A Adenylate cyclase 2; CY 99.8 7.9E-20 2.7E-24 186.7 13.0 128 252-394 34-177 (179)
10 1sq5_A Pantothenate kinase; P- 99.8 2.4E-19 8.3E-24 198.2 16.5 197 31-227 30-297 (308)
11 1odf_A YGR205W, hypothetical 3 99.8 1.2E-19 4.1E-24 199.2 13.0 179 513-692 27-279 (290)
12 3aez_A Pantothenate kinase; tr 99.8 5.1E-19 1.7E-23 196.1 15.8 240 453-693 10-303 (312)
13 2dc4_A PH1012 protein, 165AA l 99.8 8.4E-19 2.9E-23 176.7 12.8 127 254-396 26-165 (165)
14 1a7j_A Phosphoribulokinase; tr 99.8 5.1E-19 1.7E-23 194.2 10.8 166 61-226 4-215 (290)
15 2ga8_A Hypothetical 39.9 kDa p 99.8 7.8E-19 2.7E-23 196.0 11.6 141 544-687 157-349 (359)
16 1uj2_A Uridine-cytidine kinase 99.8 3.8E-18 1.3E-22 182.9 14.5 166 59-225 19-212 (252)
17 2aca_A Putative adenylate cycl 99.7 1.7E-18 5.8E-23 178.5 8.6 131 253-398 37-183 (189)
18 3asz_A Uridine kinase; cytidin 99.7 9.8E-18 3.3E-22 173.9 14.4 175 515-691 4-189 (211)
19 3c8u_A Fructokinase; YP_612366 99.7 1.5E-17 5.1E-22 173.0 13.5 171 514-688 19-207 (208)
20 4i1u_A Dephospho-COA kinase; s 99.7 5.2E-18 1.8E-22 177.2 9.4 157 59-226 6-184 (210)
21 1rz3_A Hypothetical protein rb 99.7 9.9E-18 3.4E-22 173.6 10.4 164 59-226 19-200 (201)
22 3aez_A Pantothenate kinase; tr 99.7 8.2E-17 2.8E-21 178.4 17.1 200 30-229 35-302 (312)
23 1rz3_A Hypothetical protein rb 99.7 1.7E-17 5.7E-22 171.8 9.8 168 514-689 19-200 (201)
24 3c8u_A Fructokinase; YP_612366 99.7 8.6E-17 2.9E-21 167.3 13.9 166 59-225 19-207 (208)
25 1odf_A YGR205W, hypothetical 3 99.7 1E-16 3.6E-21 175.8 13.7 187 41-229 9-279 (290)
26 2ga8_A Hypothetical 39.9 kDa p 99.7 6E-17 2E-21 180.9 11.7 137 89-226 157-351 (359)
27 2jeo_A Uridine-cytidine kinase 99.7 4.3E-16 1.5E-20 166.1 16.3 173 515-690 23-216 (245)
28 3asz_A Uridine kinase; cytidin 99.7 8.1E-16 2.8E-20 159.4 15.5 168 59-227 3-188 (211)
29 2grj_A Dephospho-COA kinase; T 99.6 5.2E-16 1.8E-20 160.2 9.3 145 59-226 9-170 (192)
30 2jeo_A Uridine-cytidine kinase 99.6 8.7E-15 3E-19 156.0 16.4 167 59-226 22-215 (245)
31 1yem_A Hypothetical protein; s 99.6 2.7E-15 9.4E-20 153.1 10.7 125 730-865 39-174 (179)
32 3ghx_A Adenylate cyclase CYAB; 99.6 6.4E-15 2.2E-19 150.4 10.9 125 728-863 39-178 (179)
33 2een_A Hypothetical protein PH 99.6 1E-14 3.4E-19 149.4 11.4 133 729-867 29-179 (183)
34 2grj_A Dephospho-COA kinase; T 99.5 1E-14 3.4E-19 150.6 8.0 149 514-690 9-171 (192)
35 2f6r_A COA synthase, bifunctio 99.5 1.9E-14 6.7E-19 156.9 10.0 161 59-227 72-253 (281)
36 1jjv_A Dephospho-COA kinase; P 99.5 5.6E-14 1.9E-18 145.1 7.8 155 62-227 2-177 (206)
37 2dc4_A PH1012 protein, 165AA l 99.4 3.2E-13 1.1E-17 135.8 11.9 125 729-864 30-165 (165)
38 2qt1_A Nicotinamide riboside k 99.4 5.4E-13 1.8E-17 138.0 12.4 159 58-226 17-189 (207)
39 3bhd_A Thtpase, thiamine triph 99.4 3.6E-13 1.2E-17 143.2 10.9 138 253-399 48-221 (234)
40 4i1u_A Dephospho-COA kinase; s 99.4 1.6E-13 5.3E-18 143.4 7.6 160 514-689 6-184 (210)
41 3n10_A Adenylate cyclase 2; CY 99.4 6.8E-13 2.3E-17 135.3 11.9 122 730-862 41-177 (179)
42 1vht_A Dephospho-COA kinase; s 99.4 4.8E-13 1.6E-17 139.5 10.9 156 61-227 3-179 (218)
43 2if2_A Dephospho-COA kinase; a 99.4 2.1E-13 7.2E-18 140.4 6.1 154 62-226 1-175 (204)
44 2qt1_A Nicotinamide riboside k 99.4 1.4E-12 4.8E-17 134.8 11.9 162 514-689 18-189 (207)
45 1uf9_A TT1252 protein; P-loop, 99.4 3.6E-13 1.2E-17 137.9 5.4 158 59-227 5-178 (203)
46 2f6r_A COA synthase, bifunctio 99.3 7.9E-13 2.7E-17 144.2 7.8 164 514-690 72-253 (281)
47 2aca_A Putative adenylate cycl 99.2 6.4E-12 2.2E-16 129.3 7.8 125 729-864 42-181 (189)
48 3ake_A Cytidylate kinase; CMP 99.2 1.5E-11 5.1E-16 126.3 10.3 157 64-227 4-192 (208)
49 3d3q_A TRNA delta(2)-isopenten 99.2 4.5E-12 1.6E-16 141.2 5.4 171 62-253 7-186 (340)
50 1jjv_A Dephospho-COA kinase; P 99.2 9.4E-12 3.2E-16 128.4 6.7 158 517-690 2-177 (206)
51 3lw7_A Adenylate kinase relate 99.2 2.2E-11 7.4E-16 120.6 6.9 154 63-227 2-161 (179)
52 3d3q_A TRNA delta(2)-isopenten 99.1 3E-12 1E-16 142.7 -0.8 153 517-678 7-164 (340)
53 3v85_A CYTH-like phosphatase; 99.1 6.7E-11 2.3E-15 123.5 8.8 127 251-385 24-195 (210)
54 1cke_A CK, MSSA, protein (cyti 99.1 9.1E-11 3.1E-15 122.4 9.2 162 62-226 5-205 (227)
55 1tev_A UMP-CMP kinase; ploop, 99.1 1.1E-10 3.7E-15 118.2 9.1 125 62-191 3-136 (196)
56 2if2_A Dephospho-COA kinase; a 99.1 3.3E-11 1.1E-15 123.9 5.1 156 518-689 2-175 (204)
57 1vht_A Dephospho-COA kinase; s 99.1 1.4E-10 4.7E-15 120.8 8.6 159 516-690 3-179 (218)
58 1uf9_A TT1252 protein; P-loop, 99.1 6.7E-11 2.3E-15 120.9 6.1 160 514-689 5-177 (203)
59 3r20_A Cytidylate kinase; stru 99.1 2.1E-10 7.2E-15 121.7 9.7 167 61-228 8-212 (233)
60 3t61_A Gluconokinase; PSI-biol 99.1 5.8E-10 2E-14 114.6 12.7 136 61-226 17-163 (202)
61 3tj7_A GBAA_1210 protein; stru 99.1 5.1E-10 1.7E-14 115.5 12.1 119 255-385 32-178 (195)
62 1q3t_A Cytidylate kinase; nucl 99.1 2.7E-10 9.1E-15 120.5 9.9 166 59-226 13-217 (236)
63 4e22_A Cytidylate kinase; P-lo 99.0 3.2E-10 1.1E-14 121.4 8.9 167 61-228 26-229 (252)
64 2gfg_A BH2851; antiparallel ba 99.0 1.4E-09 4.9E-14 112.1 12.7 115 258-384 35-177 (193)
65 1qf9_A UMP/CMP kinase, protein 99.0 7.5E-10 2.6E-14 111.8 10.0 121 60-191 4-133 (194)
66 3ake_A Cytidylate kinase; CMP 99.0 7.4E-10 2.5E-14 113.6 9.5 126 519-651 4-158 (208)
67 2h92_A Cytidylate kinase; ross 99.0 7.7E-10 2.6E-14 114.9 8.6 156 62-227 3-201 (219)
68 1cke_A CK, MSSA, protein (cyti 99.0 8.6E-10 2.9E-14 115.0 8.7 166 517-689 5-205 (227)
69 3lw7_A Adenylate kinase relate 98.9 7.5E-10 2.6E-14 109.5 7.2 155 518-690 2-161 (179)
70 2bwj_A Adenylate kinase 5; pho 98.9 1E-09 3.4E-14 111.8 7.9 122 61-191 11-138 (199)
71 1zuh_A Shikimate kinase; alpha 98.9 1.9E-09 6.6E-14 107.3 8.6 40 60-99 5-44 (168)
72 3kb2_A SPBC2 prophage-derived 98.9 4.3E-09 1.5E-13 104.3 10.0 149 62-226 1-149 (173)
73 1ukz_A Uridylate kinase; trans 98.9 1.5E-09 5.2E-14 111.3 6.8 125 59-191 12-143 (203)
74 1q3t_A Cytidylate kinase; nucl 98.9 4.5E-09 1.6E-13 111.0 10.6 173 514-689 13-217 (236)
75 2iyv_A Shikimate kinase, SK; t 98.9 3.4E-10 1.2E-14 114.4 1.6 144 63-227 3-152 (184)
76 1knq_A Gluconate kinase; ALFA/ 98.9 1.5E-08 5E-13 101.5 13.0 142 60-226 6-157 (175)
77 3r20_A Cytidylate kinase; stru 98.9 3.3E-09 1.1E-13 112.5 8.2 169 516-689 8-210 (233)
78 1e6c_A Shikimate kinase; phosp 98.8 1.9E-09 6.4E-14 107.4 5.6 39 62-100 2-40 (173)
79 3t61_A Gluconokinase; PSI-biol 98.8 1.4E-08 4.7E-13 104.3 12.2 141 516-689 17-163 (202)
80 3kb2_A SPBC2 prophage-derived 98.8 4.6E-09 1.6E-13 104.1 8.0 148 518-689 2-149 (173)
81 4e22_A Cytidylate kinase; P-lo 98.8 8E-09 2.7E-13 110.5 10.5 172 516-689 26-227 (252)
82 1tev_A UMP-CMP kinase; ploop, 98.8 5.5E-09 1.9E-13 105.6 8.6 126 516-651 2-136 (196)
83 2pt5_A Shikimate kinase, SK; a 98.8 8.5E-10 2.9E-14 109.5 2.4 109 64-190 2-114 (168)
84 2cdn_A Adenylate kinase; phosp 98.8 9.7E-09 3.3E-13 105.4 9.8 122 59-190 17-148 (201)
85 3vaa_A Shikimate kinase, SK; s 98.8 9.4E-09 3.2E-13 105.6 9.5 39 61-99 24-62 (199)
86 3tlx_A Adenylate kinase 2; str 98.8 1.7E-08 5.9E-13 107.4 11.7 128 53-190 20-157 (243)
87 3trf_A Shikimate kinase, SK; a 98.8 2.2E-09 7.6E-14 108.3 4.5 38 62-99 5-42 (185)
88 3fb4_A Adenylate kinase; psych 98.8 6.5E-09 2.2E-13 107.6 7.6 116 64-189 2-127 (216)
89 4eun_A Thermoresistant glucoki 98.8 1.9E-08 6.4E-13 103.4 11.0 141 60-226 27-177 (200)
90 2c95_A Adenylate kinase 1; tra 98.7 3E-08 1E-12 100.6 10.6 123 60-191 7-135 (196)
91 3dl0_A Adenylate kinase; phosp 98.7 7.6E-09 2.6E-13 107.3 6.3 116 64-189 2-127 (216)
92 2h92_A Cytidylate kinase; ross 98.7 8.9E-09 3E-13 106.9 6.8 38 517-554 3-40 (219)
93 1y63_A LMAJ004144AAA protein; 98.7 2.2E-08 7.5E-13 101.6 9.4 40 60-99 8-48 (184)
94 1qf9_A UMP/CMP kinase, protein 98.7 2.3E-08 7.8E-13 100.8 9.1 120 516-651 5-133 (194)
95 3vaa_A Shikimate kinase, SK; s 98.7 2E-08 6.8E-13 103.2 7.8 39 516-554 24-62 (199)
96 3cm0_A Adenylate kinase; ATP-b 98.6 4.5E-08 1.5E-12 98.7 8.7 115 61-190 3-127 (186)
97 1kag_A SKI, shikimate kinase I 98.6 2.5E-09 8.5E-14 106.7 -1.2 38 62-99 4-41 (173)
98 3fdi_A Uncharacterized protein 98.6 3.7E-08 1.3E-12 102.0 7.6 163 62-228 6-183 (201)
99 2rhm_A Putative kinase; P-loop 98.6 7.1E-08 2.4E-12 97.5 9.4 151 60-227 3-169 (193)
100 3tlx_A Adenylate kinase 2; str 98.6 9.4E-08 3.2E-12 101.7 10.6 125 511-650 23-157 (243)
101 2bwj_A Adenylate kinase 5; pho 98.6 2.7E-08 9.1E-13 101.2 6.0 121 516-651 11-138 (199)
102 2pbr_A DTMP kinase, thymidylat 98.6 9.2E-08 3.1E-12 96.6 9.5 32 64-95 2-36 (195)
103 2pt5_A Shikimate kinase, SK; a 98.6 2.5E-08 8.5E-13 98.9 5.2 36 519-554 2-37 (168)
104 3bhd_A Thtpase, thiamine triph 98.6 1.2E-07 4.2E-12 100.6 10.8 130 729-867 53-221 (234)
105 2z0h_A DTMP kinase, thymidylat 98.6 9.8E-08 3.4E-12 96.8 9.5 32 64-95 2-36 (197)
106 3a4m_A L-seryl-tRNA(SEC) kinas 98.6 2.1E-07 7E-12 100.0 12.2 137 60-227 2-156 (260)
107 1ukz_A Uridylate kinase; trans 98.6 9.8E-08 3.4E-12 97.8 9.0 123 514-650 12-142 (203)
108 2iyv_A Shikimate kinase, SK; t 98.6 2.4E-08 8.1E-13 100.8 4.2 37 518-554 3-39 (184)
109 3trf_A Shikimate kinase, SK; a 98.6 3.6E-08 1.2E-12 99.4 5.5 38 517-554 5-42 (185)
110 1via_A Shikimate kinase; struc 98.6 1.6E-08 5.5E-13 101.4 2.5 38 62-99 4-41 (175)
111 4eun_A Thermoresistant glucoki 98.5 4.4E-07 1.5E-11 93.2 11.9 40 515-554 27-66 (200)
112 2fbl_A Hypothetical protein NE 98.5 2E-07 6.7E-12 92.5 8.5 94 257-371 23-123 (153)
113 3iij_A Coilin-interacting nucl 98.5 1.2E-07 4.2E-12 95.2 7.1 101 61-190 10-118 (180)
114 1zuh_A Shikimate kinase; alpha 98.5 7.9E-08 2.7E-12 95.6 5.5 39 516-554 6-44 (168)
115 2j41_A Guanylate kinase; GMP, 98.5 1.2E-07 4E-12 97.0 6.9 158 61-226 5-171 (207)
116 2cdn_A Adenylate kinase; phosp 98.5 2.6E-07 8.9E-12 94.6 9.5 41 514-554 17-57 (201)
117 3tr0_A Guanylate kinase, GMP k 98.5 3.3E-07 1.1E-11 93.6 10.1 157 62-226 7-171 (205)
118 3fb4_A Adenylate kinase; psych 98.5 1.7E-07 5.7E-12 97.0 7.8 116 519-649 2-127 (216)
119 2jaq_A Deoxyguanosine kinase; 98.5 2.1E-07 7.2E-12 94.7 8.3 61 167-227 123-185 (205)
120 1knq_A Gluconate kinase; ALFA/ 98.5 6.3E-07 2.2E-11 89.5 11.5 39 516-554 7-45 (175)
121 1aky_A Adenylate kinase; ATP:A 98.5 2.1E-07 7.2E-12 96.8 8.3 121 61-190 3-133 (220)
122 1ly1_A Polynucleotide kinase; 98.5 1.2E-07 4.2E-12 94.5 6.2 112 62-191 2-128 (181)
123 2c95_A Adenylate kinase 1; tra 98.5 2.9E-07 9.8E-12 93.3 8.8 120 516-650 8-134 (196)
124 3be4_A Adenylate kinase; malar 98.5 2.3E-07 7.7E-12 96.6 8.2 120 61-190 4-133 (217)
125 1kht_A Adenylate kinase; phosp 98.5 8.8E-08 3E-12 96.5 4.7 38 62-99 3-45 (192)
126 1qhx_A CPT, protein (chloramph 98.5 2E-06 6.9E-11 85.8 14.6 37 62-98 3-41 (178)
127 1e6c_A Shikimate kinase; phosp 98.5 8E-08 2.7E-12 95.5 4.2 37 518-554 3-39 (173)
128 2jaq_A Deoxyguanosine kinase; 98.4 3.7E-08 1.3E-12 100.3 1.5 59 627-690 123-185 (205)
129 1kht_A Adenylate kinase; phosp 98.4 3.4E-07 1.2E-11 92.1 8.5 38 517-554 3-45 (192)
130 3dl0_A Adenylate kinase; phosp 98.4 3.1E-07 1.1E-11 95.1 7.9 116 519-649 2-127 (216)
131 1zd8_A GTP:AMP phosphotransfer 98.4 2.1E-07 7.1E-12 97.4 6.4 120 60-190 5-129 (227)
132 2qor_A Guanylate kinase; phosp 98.4 5.4E-07 1.9E-11 92.7 9.4 161 59-226 9-181 (204)
133 3hdt_A Putative kinase; struct 98.4 2.8E-07 9.4E-12 97.1 7.2 38 61-98 13-50 (223)
134 1nks_A Adenylate kinase; therm 98.4 9.3E-07 3.2E-11 88.9 10.6 37 62-98 1-42 (194)
135 2xb4_A Adenylate kinase; ATP-b 98.4 5.2E-07 1.8E-11 94.4 8.3 116 64-190 2-127 (223)
136 2vli_A Antibiotic resistance p 98.4 4.6E-07 1.6E-11 90.8 7.6 31 61-91 4-34 (183)
137 2ze6_A Isopentenyl transferase 98.4 1.5E-06 5.3E-11 92.9 11.7 35 62-96 1-35 (253)
138 3hdt_A Putative kinase; struct 98.4 1.5E-07 5.2E-12 99.1 3.7 38 516-553 13-50 (223)
139 1ak2_A Adenylate kinase isoenz 98.3 4.6E-07 1.6E-11 95.3 7.2 122 59-190 13-144 (233)
140 3nwj_A ATSK2; P loop, shikimat 98.3 4.3E-07 1.5E-11 97.3 7.0 40 62-101 48-87 (250)
141 2qor_A Guanylate kinase; phosp 98.3 8E-07 2.8E-11 91.5 8.3 132 514-649 9-147 (204)
142 2wwf_A Thymidilate kinase, put 98.3 3.8E-07 1.3E-11 93.6 5.8 35 61-95 9-43 (212)
143 2rhm_A Putative kinase; P-loop 98.3 6.1E-07 2.1E-11 90.6 7.2 39 515-553 3-41 (193)
144 1e4v_A Adenylate kinase; trans 98.3 5.7E-07 2E-11 93.2 7.2 117 64-190 2-124 (214)
145 3fdi_A Uncharacterized protein 98.3 8.8E-07 3E-11 91.6 8.1 36 517-553 6-41 (201)
146 2pbr_A DTMP kinase, thymidylat 98.3 1.3E-06 4.5E-11 88.0 8.9 32 519-550 2-36 (195)
147 1y63_A LMAJ004144AAA protein; 98.3 1.3E-06 4.3E-11 88.6 8.8 40 515-554 8-48 (184)
148 3tj7_A GBAA_1210 protein; stru 98.3 2.9E-06 9.8E-11 87.5 11.1 122 729-859 35-183 (195)
149 2plr_A DTMP kinase, probable t 98.3 4.5E-06 1.5E-10 85.3 12.2 32 62-93 4-37 (213)
150 3umf_A Adenylate kinase; rossm 98.3 1.7E-06 5.8E-11 90.7 9.1 125 58-191 25-155 (217)
151 1aky_A Adenylate kinase; ATP:A 98.3 1.6E-06 5.6E-11 90.0 8.6 39 516-554 3-41 (220)
152 2pez_A Bifunctional 3'-phospho 98.3 3.7E-06 1.3E-10 84.3 11.0 35 61-95 4-41 (179)
153 2j41_A Guanylate kinase; GMP, 98.2 1.7E-06 5.7E-11 88.3 8.5 131 516-650 5-140 (207)
154 3uie_A Adenylyl-sulfate kinase 98.2 6.6E-06 2.3E-10 84.3 12.8 42 59-100 22-68 (200)
155 1zak_A Adenylate kinase; ATP:A 98.2 3.3E-07 1.1E-11 95.4 2.9 122 60-190 3-130 (222)
156 3gmt_A Adenylate kinase; ssgci 98.2 1.4E-06 4.8E-11 92.0 7.5 118 62-190 8-132 (230)
157 3foz_A TRNA delta(2)-isopenten 98.2 2.4E-07 8.1E-12 101.8 1.4 173 59-254 7-186 (316)
158 3cm0_A Adenylate kinase; ATP-b 98.2 1.6E-06 5.6E-11 87.1 7.5 39 516-554 3-41 (186)
159 1nks_A Adenylate kinase; therm 98.2 2.6E-06 8.7E-11 85.7 8.9 36 518-553 2-42 (194)
160 2vp4_A Deoxynucleoside kinase; 98.2 1E-07 3.5E-12 100.4 -1.7 170 515-690 18-209 (230)
161 1ly1_A Polynucleotide kinase; 98.2 8E-07 2.7E-11 88.5 4.9 37 517-553 2-39 (181)
162 2yvu_A Probable adenylyl-sulfa 98.2 4.2E-06 1.4E-10 84.5 10.3 40 60-99 11-55 (186)
163 3tr0_A Guanylate kinase, GMP k 98.2 6.2E-06 2.1E-10 84.1 11.2 26 517-542 7-32 (205)
164 3a8t_A Adenylate isopentenyltr 98.2 6.7E-07 2.3E-11 99.4 4.0 43 60-102 38-82 (339)
165 3a00_A Guanylate kinase, GMP k 98.2 2.7E-06 9.1E-11 86.3 8.1 158 63-226 2-169 (186)
166 1nn5_A Similar to deoxythymidy 98.2 5.2E-06 1.8E-10 85.2 10.4 29 60-88 7-35 (215)
167 1ltq_A Polynucleotide kinase; 98.2 3.3E-06 1.1E-10 91.8 9.3 111 62-191 2-128 (301)
168 1m7g_A Adenylylsulfate kinase; 98.2 4.8E-06 1.6E-10 86.1 9.9 42 59-100 22-69 (211)
169 3be4_A Adenylate kinase; malar 98.2 2.9E-06 9.9E-11 88.2 8.3 40 516-555 4-43 (217)
170 1zd8_A GTP:AMP phosphotransfer 98.2 2.7E-06 9.3E-11 88.9 8.0 40 515-554 5-44 (227)
171 2vp4_A Deoxynucleoside kinase; 98.2 8.1E-07 2.8E-11 93.4 3.8 61 166-226 144-208 (230)
172 3lnc_A Guanylate kinase, GMP k 98.2 2.7E-06 9.3E-11 89.1 7.8 157 62-226 27-193 (231)
173 3iij_A Coilin-interacting nucl 98.2 3E-06 1E-10 85.0 7.8 40 516-555 10-49 (180)
174 3crm_A TRNA delta(2)-isopenten 98.1 7.8E-07 2.7E-11 98.5 3.6 40 62-101 5-46 (323)
175 2xb4_A Adenylate kinase; ATP-b 98.1 5E-06 1.7E-10 86.9 9.1 116 519-650 2-127 (223)
176 3a4m_A L-seryl-tRNA(SEC) kinas 98.1 6.3E-06 2.2E-10 88.3 9.9 105 516-650 3-121 (260)
177 2z0h_A DTMP kinase, thymidylat 98.1 6.2E-06 2.1E-10 83.4 9.3 33 518-550 1-36 (197)
178 2wwf_A Thymidilate kinase, put 98.1 2.5E-06 8.6E-11 87.5 6.4 35 516-550 9-43 (212)
179 1via_A Shikimate kinase; struc 98.1 1.2E-06 4.3E-11 87.5 3.5 36 519-554 6-41 (175)
180 3umf_A Adenylate kinase; rossm 98.1 3.4E-06 1.1E-10 88.5 6.7 124 513-650 25-154 (217)
181 2gks_A Bifunctional SAT/APS ki 98.1 3.4E-06 1.2E-10 100.0 7.6 118 48-186 357-487 (546)
182 1e4v_A Adenylate kinase; trans 98.1 6.7E-06 2.3E-10 85.1 8.7 36 519-554 2-37 (214)
183 2ze6_A Isopentenyl transferase 98.1 1.2E-05 4.1E-10 85.9 10.8 35 518-552 2-36 (253)
184 1gvn_B Zeta; postsegregational 98.1 2.4E-06 8.1E-11 93.3 5.2 41 59-99 30-72 (287)
185 2p5t_B PEZT; postsegregational 98.1 7E-06 2.4E-10 87.6 8.8 42 58-99 28-71 (253)
186 3tau_A Guanylate kinase, GMP k 98.1 2.5E-06 8.6E-11 88.2 5.0 158 61-226 7-173 (208)
187 3sr0_A Adenylate kinase; phosp 98.1 5.3E-06 1.8E-10 86.2 7.5 114 64-190 2-125 (206)
188 3nwj_A ATSK2; P loop, shikimat 98.1 3.1E-06 1.1E-10 90.6 5.8 37 518-554 49-85 (250)
189 3exa_A TRNA delta(2)-isopenten 98.0 6.6E-07 2.3E-11 98.4 0.5 42 62-103 3-46 (322)
190 3zvl_A Bifunctional polynucleo 98.0 6.8E-06 2.3E-10 94.3 9.0 96 59-191 255-359 (416)
191 1zak_A Adenylate kinase; ATP:A 98.0 2.3E-06 7.8E-11 89.1 4.5 40 515-554 3-42 (222)
192 1dek_A Deoxynucleoside monopho 98.0 4E-07 1.4E-11 97.0 -1.7 34 62-95 1-34 (241)
193 1ak2_A Adenylate kinase isoenz 98.0 7.5E-06 2.6E-10 86.0 7.9 40 515-554 14-53 (233)
194 1nn5_A Similar to deoxythymidy 98.0 1.5E-05 5.3E-10 81.6 9.0 36 515-550 7-42 (215)
195 3a00_A Guanylate kinase, GMP k 98.0 9.2E-06 3.1E-10 82.3 7.0 25 518-542 2-26 (186)
196 1gvn_B Zeta; postsegregational 97.9 2.2E-05 7.4E-10 85.6 9.9 39 515-553 31-71 (287)
197 3sr0_A Adenylate kinase; phosp 97.9 1.3E-05 4.5E-10 83.2 7.6 114 519-650 2-125 (206)
198 1ltq_A Polynucleotide kinase; 97.9 9.7E-06 3.3E-10 88.1 6.8 114 517-651 2-128 (301)
199 3gmt_A Adenylate kinase; ssgci 97.9 1.5E-05 5.3E-10 84.1 8.0 121 516-651 7-133 (230)
200 2gfg_A BH2851; antiparallel ba 97.9 5.5E-05 1.9E-09 77.7 11.4 122 730-860 36-184 (193)
201 3eph_A TRNA isopentenyltransfe 97.9 3.8E-06 1.3E-10 95.4 2.8 41 62-102 2-44 (409)
202 1qhx_A CPT, protein (chloramph 97.9 2.1E-05 7.3E-10 78.3 7.9 37 517-553 3-41 (178)
203 2plr_A DTMP kinase, probable t 97.9 3.5E-05 1.2E-09 78.6 9.7 27 517-543 4-30 (213)
204 4eaq_A DTMP kinase, thymidylat 97.9 7.1E-05 2.4E-09 78.8 12.2 154 59-226 23-208 (229)
205 3uie_A Adenylyl-sulfate kinase 97.8 0.00011 3.9E-09 75.0 12.8 40 514-553 22-66 (200)
206 3tau_A Guanylate kinase, GMP k 97.8 1.8E-05 6.1E-10 81.8 6.1 28 515-542 6-33 (208)
207 1x6v_B Bifunctional 3'-phospho 97.8 2.2E-05 7.5E-10 94.1 7.6 35 61-95 51-88 (630)
208 1kgd_A CASK, peripheral plasma 97.8 2.8E-05 9.6E-10 78.4 6.7 25 518-542 6-30 (180)
209 2vli_A Antibiotic resistance p 97.7 4E-05 1.4E-09 76.5 7.3 31 516-546 4-34 (183)
210 3lnc_A Guanylate kinase, GMP k 97.7 4.3E-05 1.5E-09 80.0 7.6 27 517-543 27-54 (231)
211 1m8p_A Sulfate adenylyltransfe 97.7 5E-05 1.7E-09 90.6 9.0 42 59-100 393-440 (573)
212 4eaq_A DTMP kinase, thymidylat 97.7 0.00024 8.1E-09 74.8 12.9 28 515-542 24-51 (229)
213 2p5t_B PEZT; postsegregational 97.7 0.00011 3.7E-09 78.3 10.1 40 514-553 29-70 (253)
214 3v85_A CYTH-like phosphatase; 97.6 7.7E-05 2.6E-09 77.5 7.7 134 730-867 32-210 (210)
215 1kag_A SKI, shikimate kinase I 97.6 1.9E-05 6.5E-10 78.3 2.3 37 517-553 4-40 (173)
216 3zvl_A Bifunctional polynucleo 97.6 5.4E-05 1.8E-09 86.8 6.2 37 515-551 256-292 (416)
217 1gtv_A TMK, thymidylate kinase 97.5 1.6E-05 5.6E-10 81.5 0.8 24 519-542 2-25 (214)
218 2bbw_A Adenylate kinase 4, AK4 97.5 7.6E-05 2.6E-09 78.9 5.9 38 61-98 26-63 (246)
219 3ch4_B Pmkase, phosphomevalona 97.5 0.00013 4.6E-09 75.3 7.6 146 60-227 9-174 (202)
220 3ch4_B Pmkase, phosphomevalona 97.5 0.00017 5.8E-09 74.5 8.1 118 515-646 9-144 (202)
221 1gtv_A TMK, thymidylate kinase 97.5 7.3E-06 2.5E-10 84.1 -2.2 24 64-87 2-25 (214)
222 2ocp_A DGK, deoxyguanosine kin 97.5 2.3E-05 7.9E-10 82.6 1.0 48 628-677 149-196 (241)
223 2bdt_A BH3686; alpha-beta prot 97.5 0.00033 1.1E-08 70.5 9.6 37 63-99 3-40 (189)
224 1kgd_A CASK, peripheral plasma 97.4 3.7E-05 1.3E-09 77.5 2.1 25 63-87 6-30 (180)
225 1zp6_A Hypothetical protein AT 97.4 0.0011 3.9E-08 66.4 12.5 38 61-98 8-47 (191)
226 1ex7_A Guanylate kinase; subst 97.4 0.00036 1.2E-08 71.3 8.6 124 520-649 4-134 (186)
227 1ex7_A Guanylate kinase; subst 97.4 0.00038 1.3E-08 71.1 8.7 22 65-86 4-25 (186)
228 2gks_A Bifunctional SAT/APS ki 97.4 0.00025 8.6E-09 84.1 8.5 128 489-646 347-487 (546)
229 2yvu_A Probable adenylyl-sulfa 97.3 0.00033 1.1E-08 70.4 7.8 37 515-551 11-52 (186)
230 2ocp_A DGK, deoxyguanosine kin 97.3 0.00085 2.9E-08 70.5 10.9 47 168-214 149-196 (241)
231 2axn_A 6-phosphofructo-2-kinas 97.3 0.00066 2.2E-08 80.0 10.9 41 60-100 33-78 (520)
232 3exa_A TRNA delta(2)-isopenten 97.3 0.00012 3.9E-09 80.7 4.1 38 517-554 3-42 (322)
233 3v9p_A DTMP kinase, thymidylat 97.3 0.00013 4.5E-09 76.9 4.1 59 167-226 150-210 (227)
234 2v54_A DTMP kinase, thymidylat 97.3 0.00013 4.4E-09 74.1 3.7 35 61-95 3-38 (204)
235 3lv8_A DTMP kinase, thymidylat 97.3 0.00058 2E-08 72.4 8.8 57 168-226 154-212 (236)
236 3hjn_A DTMP kinase, thymidylat 97.2 0.00077 2.6E-08 69.2 9.2 30 64-93 2-34 (197)
237 3foz_A TRNA delta(2)-isopenten 97.2 0.00019 6.5E-09 78.8 4.6 41 514-554 7-49 (316)
238 3eph_A TRNA isopentenyltransfe 97.2 0.00019 6.3E-09 81.6 4.3 38 517-554 2-41 (409)
239 3crm_A TRNA delta(2)-isopenten 97.2 0.00018 6.1E-09 79.7 3.9 36 517-552 5-40 (323)
240 2fbl_A Hypothetical protein NE 97.2 0.0013 4.5E-08 65.0 9.7 96 729-839 24-123 (153)
241 3cr8_A Sulfate adenylyltranfer 97.2 0.00034 1.2E-08 83.0 6.3 39 60-98 367-411 (552)
242 4edh_A DTMP kinase, thymidylat 97.1 0.0011 3.9E-08 68.9 9.4 59 167-226 130-190 (213)
243 1x6v_B Bifunctional 3'-phospho 97.1 0.00072 2.5E-08 81.1 8.4 34 516-549 51-87 (630)
244 3a8t_A Adenylate isopentenyltr 97.1 0.00023 7.7E-09 79.2 3.7 36 516-551 39-74 (339)
245 3ld9_A DTMP kinase, thymidylat 97.0 0.00015 5E-09 76.3 1.5 57 168-227 145-201 (223)
246 2pez_A Bifunctional 3'-phospho 97.0 0.00037 1.3E-08 69.6 4.4 35 516-550 4-41 (179)
247 2v54_A DTMP kinase, thymidylat 97.0 0.00024 8.3E-09 72.1 2.9 35 516-550 3-38 (204)
248 2bbw_A Adenylate kinase 4, AK4 97.0 0.00024 8.1E-09 75.0 2.8 39 516-554 26-64 (246)
249 4tmk_A Protein (thymidylate ki 97.0 0.0026 9E-08 66.2 10.6 57 168-226 132-190 (213)
250 1s96_A Guanylate kinase, GMP k 96.9 0.0041 1.4E-07 64.9 11.6 30 58-87 12-41 (219)
251 4hlc_A DTMP kinase, thymidylat 96.9 0.0031 1.1E-07 65.2 9.8 30 63-92 3-34 (205)
252 1zp6_A Hypothetical protein AT 96.8 0.00044 1.5E-08 69.4 3.0 38 515-552 7-46 (191)
253 1lvg_A Guanylate kinase, GMP k 96.8 0.004 1.4E-07 63.6 9.6 25 63-87 5-29 (198)
254 1m7g_A Adenylylsulfate kinase; 96.7 0.00077 2.6E-08 69.4 3.8 39 514-552 22-66 (211)
255 3lv8_A DTMP kinase, thymidylat 96.7 0.0014 4.8E-08 69.4 5.7 57 628-689 154-212 (236)
256 2bdt_A BH3686; alpha-beta prot 96.7 0.00067 2.3E-08 68.3 2.9 36 518-553 3-39 (189)
257 4b4t_J 26S protease regulatory 96.6 0.012 4E-07 66.9 12.9 59 37-95 143-215 (405)
258 1m8p_A Sulfate adenylyltransfe 96.6 0.0013 4.6E-08 78.3 5.2 39 515-553 394-438 (573)
259 1dek_A Deoxynucleoside monopho 96.5 0.0013 4.6E-08 69.8 3.8 37 518-554 2-38 (241)
260 3ney_A 55 kDa erythrocyte memb 96.4 0.0051 1.7E-07 63.3 7.4 120 516-639 18-141 (197)
261 4b4t_I 26S protease regulatory 96.4 0.025 8.6E-07 64.7 13.7 60 36-95 176-249 (437)
262 3cf0_A Transitional endoplasmi 96.3 0.0043 1.5E-07 67.5 6.7 35 60-94 47-81 (301)
263 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.048 1.6E-06 60.0 14.9 31 62-92 45-76 (322)
264 1g8f_A Sulfate adenylyltransfe 96.3 0.0037 1.3E-07 73.3 6.1 59 488-550 369-435 (511)
265 4b4t_H 26S protease regulatory 96.2 0.024 8.3E-07 65.3 12.7 59 37-95 204-276 (467)
266 1bif_A 6-phosphofructo-2-kinas 96.2 0.013 4.3E-07 68.1 10.2 35 60-94 37-71 (469)
267 1g8f_A Sulfate adenylyltransfe 96.2 0.0037 1.3E-07 73.3 5.5 48 48-95 380-435 (511)
268 2qmh_A HPR kinase/phosphorylas 96.2 0.0031 1E-07 65.0 4.2 39 62-101 34-74 (205)
269 3p32_A Probable GTPase RV1496/ 96.1 0.025 8.5E-07 63.1 11.8 39 57-95 74-117 (355)
270 4hlc_A DTMP kinase, thymidylat 96.1 0.0035 1.2E-07 64.8 4.5 48 629-676 125-172 (205)
271 1lv7_A FTSH; alpha/beta domain 96.1 0.0064 2.2E-07 64.2 6.6 33 62-94 45-77 (257)
272 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.006 2.1E-07 64.1 6.3 33 61-93 38-70 (262)
273 3h4m_A Proteasome-activating n 96.1 0.0057 1.9E-07 65.4 6.2 34 60-93 49-82 (285)
274 4b4t_K 26S protease regulatory 95.9 0.015 5.1E-07 66.7 8.7 60 36-95 166-239 (428)
275 1ye8_A Protein THEP1, hypothet 95.9 0.0034 1.2E-07 63.3 2.9 24 519-542 2-25 (178)
276 2qmh_A HPR kinase/phosphorylas 95.9 0.004 1.4E-07 64.2 3.4 36 517-553 34-69 (205)
277 1p5z_B DCK, deoxycytidine kina 95.8 0.0028 9.5E-08 67.5 2.1 33 60-92 22-55 (263)
278 3t15_A Ribulose bisphosphate c 95.8 0.0046 1.6E-07 67.2 3.6 36 514-549 33-68 (293)
279 1xjc_A MOBB protein homolog; s 95.8 0.0049 1.7E-07 61.9 3.5 26 516-541 3-28 (169)
280 3b9p_A CG5977-PA, isoform A; A 95.7 0.011 3.7E-07 63.6 6.5 34 61-94 53-86 (297)
281 4b4t_L 26S protease subunit RP 95.7 0.013 4.6E-07 67.3 7.3 59 36-94 175-247 (437)
282 3eie_A Vacuolar protein sortin 95.6 0.014 4.7E-07 64.1 6.9 33 62-94 51-83 (322)
283 4b4t_M 26S protease regulatory 95.6 0.015 5E-07 66.9 7.1 60 36-95 175-248 (434)
284 1p5z_B DCK, deoxycytidine kina 95.6 0.0033 1.1E-07 66.9 1.7 33 515-547 22-55 (263)
285 1ye8_A Protein THEP1, hypothet 95.6 0.0063 2.2E-07 61.3 3.6 27 64-90 2-28 (178)
286 1xjc_A MOBB protein homolog; s 95.5 0.0067 2.3E-07 60.9 3.6 26 61-86 3-28 (169)
287 1lvg_A Guanylate kinase, GMP k 95.5 0.0053 1.8E-07 62.7 2.8 25 518-542 5-29 (198)
288 2axn_A 6-phosphofructo-2-kinas 95.5 0.0056 1.9E-07 72.1 3.4 39 515-553 33-76 (520)
289 3t15_A Ribulose bisphosphate c 95.5 0.0065 2.2E-07 66.0 3.6 36 59-94 33-68 (293)
290 1znw_A Guanylate kinase, GMP k 95.5 0.0066 2.3E-07 62.1 3.5 26 517-542 20-45 (207)
291 4gp7_A Metallophosphoesterase; 95.5 0.0051 1.8E-07 61.2 2.4 34 61-96 8-41 (171)
292 1tue_A Replication protein E1; 95.5 0.014 4.7E-07 60.5 5.6 46 47-92 43-88 (212)
293 1s96_A Guanylate kinase, GMP k 95.4 0.0072 2.5E-07 63.1 3.5 28 515-542 14-41 (219)
294 1tue_A Replication protein E1; 95.4 0.017 6E-07 59.7 6.2 45 504-548 45-89 (212)
295 4gp7_A Metallophosphoesterase; 95.4 0.0067 2.3E-07 60.4 3.0 33 516-550 8-40 (171)
296 1svm_A Large T antigen; AAA+ f 95.4 0.017 6E-07 65.1 6.6 41 507-547 159-199 (377)
297 3ec2_A DNA replication protein 95.4 0.014 4.8E-07 58.0 5.3 38 504-541 23-62 (180)
298 3ec2_A DNA replication protein 95.3 0.02 7E-07 56.8 6.3 39 48-86 22-62 (180)
299 1d2n_A N-ethylmaleimide-sensit 95.3 0.026 8.9E-07 60.0 7.5 35 59-93 61-95 (272)
300 1svm_A Large T antigen; AAA+ f 95.3 0.022 7.5E-07 64.3 7.2 37 57-93 164-200 (377)
301 3u61_B DNA polymerase accessor 95.3 0.016 5.4E-07 63.2 5.9 44 505-548 36-79 (324)
302 3cf0_A Transitional endoplasmi 95.3 0.014 4.8E-07 63.4 5.3 35 515-549 47-81 (301)
303 1z6g_A Guanylate kinase; struc 95.2 0.0078 2.7E-07 62.4 2.9 25 517-541 23-47 (218)
304 1jbk_A CLPB protein; beta barr 95.2 0.027 9.1E-07 55.1 6.7 25 62-86 43-67 (195)
305 1znw_A Guanylate kinase, GMP k 95.2 0.01 3.5E-07 60.7 3.7 26 62-87 20-45 (207)
306 3pfi_A Holliday junction ATP-d 95.2 0.024 8.2E-07 62.1 6.9 50 45-94 38-87 (338)
307 1jbk_A CLPB protein; beta barr 95.2 0.021 7.1E-07 56.0 5.7 26 516-541 42-67 (195)
308 2x8a_A Nuclear valosin-contain 95.2 0.01 3.5E-07 63.9 3.7 30 520-549 47-76 (274)
309 1lv7_A FTSH; alpha/beta domain 95.2 0.013 4.3E-07 61.9 4.3 32 517-548 45-76 (257)
310 1in4_A RUVB, holliday junction 95.1 0.029 1E-06 61.9 7.4 32 60-91 49-80 (334)
311 1vma_A Cell division protein F 95.1 0.013 4.4E-07 64.3 4.5 37 515-551 102-143 (306)
312 3u61_B DNA polymerase accessor 95.1 0.018 6.2E-07 62.8 5.6 49 46-94 32-80 (324)
313 2x8a_A Nuclear valosin-contain 95.1 0.014 4.8E-07 62.8 4.6 31 65-95 47-77 (274)
314 3d8b_A Fidgetin-like protein 1 95.1 0.024 8.2E-07 63.2 6.6 33 61-93 116-148 (357)
315 3bos_A Putative DNA replicatio 95.1 0.021 7.3E-07 58.5 5.7 49 47-96 38-91 (242)
316 2p65_A Hypothetical protein PF 95.1 0.025 8.4E-07 55.4 5.9 25 62-86 43-67 (187)
317 1htw_A HI0065; nucleotide-bind 95.1 0.012 4.1E-07 58.2 3.6 27 515-541 31-57 (158)
318 1l8q_A Chromosomal replication 95.0 0.022 7.4E-07 62.3 6.0 30 62-91 37-69 (324)
319 1vma_A Cell division protein F 95.0 0.015 5E-07 63.9 4.5 38 60-97 102-144 (306)
320 2i3b_A HCR-ntpase, human cance 95.0 0.01 3.6E-07 60.4 3.1 32 519-553 3-37 (189)
321 3p32_A Probable GTPase RV1496/ 95.0 0.022 7.6E-07 63.5 6.1 43 507-549 69-116 (355)
322 3ney_A 55 kDa erythrocyte memb 95.0 0.012 4.2E-07 60.4 3.6 26 62-87 19-44 (197)
323 1njg_A DNA polymerase III subu 95.0 0.026 8.9E-07 57.3 6.1 34 509-542 37-70 (250)
324 1z6g_A Guanylate kinase; struc 95.0 0.011 3.6E-07 61.4 3.1 25 62-86 23-47 (218)
325 2p65_A Hypothetical protein PF 95.0 0.022 7.5E-07 55.8 5.3 25 517-541 43-67 (187)
326 3dm5_A SRP54, signal recogniti 95.0 0.015 5.1E-07 66.9 4.5 38 516-553 99-141 (443)
327 1iy2_A ATP-dependent metallopr 95.0 0.03 1E-06 59.8 6.7 30 65-94 76-105 (278)
328 1c9k_A COBU, adenosylcobinamid 94.9 0.0089 3.1E-07 60.6 2.3 27 64-91 1-27 (180)
329 2r62_A Cell division protease 94.9 0.0079 2.7E-07 63.7 2.0 31 64-94 46-76 (268)
330 1rj9_A FTSY, signal recognitio 94.9 0.013 4.5E-07 64.2 3.8 26 516-541 101-126 (304)
331 3kl4_A SRP54, signal recogniti 94.9 0.015 5.1E-07 66.8 4.3 36 516-551 96-136 (433)
332 2qz4_A Paraplegin; AAA+, SPG7, 94.9 0.016 5.3E-07 60.9 4.2 32 516-547 38-69 (262)
333 1np6_A Molybdopterin-guanine d 94.9 0.014 4.8E-07 58.7 3.6 25 517-541 6-30 (174)
334 2f1r_A Molybdopterin-guanine d 94.9 0.0078 2.7E-07 60.4 1.6 25 62-86 2-26 (171)
335 1c9k_A COBU, adenosylcobinamid 94.8 0.0082 2.8E-07 60.9 1.6 25 520-545 2-26 (180)
336 3h4m_A Proteasome-activating n 94.8 0.02 7E-07 61.0 4.8 33 515-547 49-81 (285)
337 2f1r_A Molybdopterin-guanine d 94.8 0.0094 3.2E-07 59.8 2.0 24 518-541 3-26 (171)
338 3e70_C DPA, signal recognition 94.8 0.018 6E-07 63.9 4.4 27 515-541 127-153 (328)
339 2kjq_A DNAA-related protein; s 94.8 0.013 4.4E-07 57.3 2.9 25 517-541 36-60 (149)
340 1njg_A DNA polymerase III subu 94.8 0.029 9.8E-07 56.9 5.7 40 48-87 31-70 (250)
341 1np6_A Molybdopterin-guanine d 94.8 0.017 5.6E-07 58.2 3.7 26 61-86 5-30 (174)
342 3hws_A ATP-dependent CLP prote 94.8 0.022 7.5E-07 63.5 5.1 34 62-95 51-84 (363)
343 1ixz_A ATP-dependent metallopr 94.7 0.016 5.4E-07 61.0 3.6 29 520-548 52-80 (254)
344 1ixz_A ATP-dependent metallopr 94.7 0.02 6.7E-07 60.3 4.3 30 65-94 52-81 (254)
345 1d2n_A N-ethylmaleimide-sensit 94.7 0.048 1.6E-06 57.9 7.4 35 514-548 61-95 (272)
346 2ehv_A Hypothetical protein PH 94.7 0.015 5E-07 60.5 3.2 22 517-538 30-51 (251)
347 3b9p_A CG5977-PA, isoform A; A 94.7 0.018 6.2E-07 61.9 4.0 31 517-547 54-84 (297)
348 3tif_A Uncharacterized ABC tra 94.7 0.013 4.3E-07 61.8 2.7 24 518-541 32-55 (235)
349 2eyu_A Twitching motility prot 94.7 0.016 5.6E-07 62.0 3.6 26 516-541 24-49 (261)
350 2qp9_X Vacuolar protein sortin 94.6 0.027 9.2E-07 62.8 5.5 33 62-94 84-116 (355)
351 3b9q_A Chloroplast SRP recepto 94.6 0.026 8.8E-07 61.8 5.2 26 516-541 99-124 (302)
352 1hqc_A RUVB; extended AAA-ATPa 94.6 0.033 1.1E-06 60.4 6.0 46 46-91 22-67 (324)
353 1in4_A RUVB, holliday junction 94.6 0.032 1.1E-06 61.6 5.9 30 516-545 50-79 (334)
354 1htw_A HI0065; nucleotide-bind 94.6 0.02 6.8E-07 56.6 3.8 27 60-86 31-57 (158)
355 4a74_A DNA repair and recombin 94.6 0.016 5.4E-07 59.4 3.2 26 516-541 24-49 (231)
356 2chg_A Replication factor C sm 94.6 0.039 1.3E-06 55.3 6.0 22 520-541 41-62 (226)
357 1ofh_A ATP-dependent HSL prote 94.6 0.029 9.9E-07 60.2 5.3 32 62-93 50-81 (310)
358 3dm5_A SRP54, signal recogniti 94.6 0.023 7.9E-07 65.4 4.7 38 61-98 99-141 (443)
359 3cf2_A TER ATPase, transitiona 94.5 0.14 4.7E-06 63.2 11.7 35 61-95 237-271 (806)
360 2kjq_A DNAA-related protein; s 94.5 0.02 7E-07 55.8 3.6 25 62-86 36-60 (149)
361 1sxj_C Activator 1 40 kDa subu 94.5 0.034 1.2E-06 61.2 5.9 38 504-542 34-71 (340)
362 3cr8_A Sulfate adenylyltranfer 94.5 0.011 3.8E-07 70.0 2.0 38 515-552 367-410 (552)
363 3e70_C DPA, signal recognition 94.5 0.024 8.3E-07 62.7 4.6 27 60-86 127-153 (328)
364 2zan_A Vacuolar protein sortin 94.5 0.046 1.6E-06 62.9 7.1 58 37-94 129-200 (444)
365 3pfi_A Holliday junction ATP-d 94.5 0.036 1.2E-06 60.7 6.0 35 515-549 53-87 (338)
366 1bif_A 6-phosphofructo-2-kinas 94.4 0.014 4.8E-07 67.7 2.6 38 515-552 37-74 (469)
367 3jvv_A Twitching mobility prot 94.4 0.027 9.4E-07 63.0 4.8 23 519-541 125-147 (356)
368 2w58_A DNAI, primosome compone 94.4 0.037 1.3E-06 55.8 5.4 24 518-541 55-78 (202)
369 3bos_A Putative DNA replicatio 94.4 0.035 1.2E-06 56.8 5.3 36 506-542 42-77 (242)
370 2r62_A Cell division protease 94.4 0.017 5.8E-07 61.1 2.9 30 519-548 46-75 (268)
371 1l8q_A Chromosomal replication 94.4 0.032 1.1E-06 60.9 5.2 35 507-541 26-61 (324)
372 1sxj_A Activator 1 95 kDa subu 94.4 0.036 1.2E-06 65.0 5.9 34 62-95 77-110 (516)
373 2pcj_A ABC transporter, lipopr 94.3 0.015 5.1E-07 60.7 2.3 24 518-541 31-54 (224)
374 3kl4_A SRP54, signal recogniti 94.3 0.023 8E-07 65.2 4.0 37 61-97 96-137 (433)
375 3ld9_A DTMP kinase, thymidylat 94.3 0.027 9.3E-07 59.0 4.2 58 627-690 144-201 (223)
376 2onk_A Molybdate/tungstate ABC 94.3 0.02 6.8E-07 60.5 3.2 24 518-541 25-48 (240)
377 2eyu_A Twitching motility prot 94.3 0.024 8.3E-07 60.6 3.8 27 60-86 23-49 (261)
378 1iy2_A ATP-dependent metallopr 94.3 0.023 7.8E-07 60.8 3.6 29 520-548 76-104 (278)
379 2px0_A Flagellar biosynthesis 94.3 0.023 7.9E-07 62.0 3.7 36 516-551 104-145 (296)
380 2og2_A Putative signal recogni 94.2 0.035 1.2E-06 62.3 5.2 26 516-541 156-181 (359)
381 1rj9_A FTSY, signal recognitio 94.2 0.024 8.1E-07 62.2 3.8 26 61-86 101-126 (304)
382 2c9o_A RUVB-like 1; hexameric 94.2 0.052 1.8E-06 62.6 6.8 35 61-95 62-98 (456)
383 3tqf_A HPR(Ser) kinase; transf 94.2 0.032 1.1E-06 56.2 4.3 33 63-96 17-49 (181)
384 3gfo_A Cobalt import ATP-bindi 94.2 0.018 6.1E-07 62.2 2.6 24 518-541 35-58 (275)
385 3vfd_A Spastin; ATPase, microt 94.2 0.059 2E-06 60.6 7.0 34 62-95 148-181 (389)
386 1zu4_A FTSY; GTPase, signal re 94.2 0.032 1.1E-06 61.6 4.6 36 61-96 104-144 (320)
387 1zu4_A FTSY; GTPase, signal re 94.2 0.032 1.1E-06 61.6 4.6 37 515-551 103-144 (320)
388 4g1u_C Hemin import ATP-bindin 94.2 0.019 6.3E-07 61.7 2.6 24 518-541 38-61 (266)
389 2ce7_A Cell division protein F 94.2 0.057 1.9E-06 62.8 6.9 32 63-94 50-81 (476)
390 2chg_A Replication factor C sm 94.2 0.051 1.7E-06 54.5 5.8 38 48-86 25-62 (226)
391 4b4t_K 26S protease regulatory 94.2 0.027 9.2E-07 64.6 4.1 36 514-549 203-238 (428)
392 2v9p_A Replication protein E1; 94.1 0.039 1.3E-06 60.5 5.1 30 513-542 122-151 (305)
393 3tif_A Uncharacterized ABC tra 94.1 0.021 7.2E-07 60.1 2.9 24 63-86 32-55 (235)
394 2cbz_A Multidrug resistance-as 94.1 0.02 6.7E-07 60.4 2.7 24 518-541 32-55 (237)
395 1ofh_A ATP-dependent HSL prote 94.1 0.035 1.2E-06 59.6 4.7 31 517-547 50-80 (310)
396 2w58_A DNAI, primosome compone 94.1 0.051 1.8E-06 54.8 5.7 24 63-86 55-78 (202)
397 2ehv_A Hypothetical protein PH 94.1 0.025 8.6E-07 58.7 3.4 22 62-83 30-51 (251)
398 4a74_A DNA repair and recombin 94.1 0.026 8.9E-07 57.8 3.5 25 62-86 25-49 (231)
399 4edh_A DTMP kinase, thymidylat 94.1 0.032 1.1E-06 57.9 4.1 58 628-689 131-190 (213)
400 3b9q_A Chloroplast SRP recepto 94.1 0.051 1.7E-06 59.4 5.9 26 61-86 99-124 (302)
401 3b85_A Phosphate starvation-in 94.0 0.019 6.5E-07 59.4 2.3 22 519-540 24-45 (208)
402 3eie_A Vacuolar protein sortin 94.0 0.046 1.6E-06 59.9 5.5 32 517-548 51-82 (322)
403 2yhs_A FTSY, cell division pro 94.0 0.034 1.2E-06 64.7 4.7 27 515-541 291-317 (503)
404 3hws_A ATP-dependent CLP prote 94.0 0.027 9.2E-07 62.8 3.6 33 517-549 51-83 (363)
405 2d2e_A SUFC protein; ABC-ATPas 94.0 0.025 8.4E-07 60.1 3.2 23 518-540 30-52 (250)
406 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.029 9.8E-07 57.3 3.6 25 517-541 23-47 (235)
407 1b0u_A Histidine permease; ABC 94.0 0.021 7.3E-07 61.1 2.6 24 518-541 33-56 (262)
408 2z4s_A Chromosomal replication 93.9 0.059 2E-06 62.0 6.4 36 506-541 119-154 (440)
409 2ff7_A Alpha-hemolysin translo 93.9 0.022 7.6E-07 60.4 2.7 24 518-541 36-59 (247)
410 1mv5_A LMRA, multidrug resista 93.9 0.022 7.7E-07 60.1 2.6 25 517-541 28-52 (243)
411 1um8_A ATP-dependent CLP prote 93.9 0.034 1.2E-06 62.1 4.3 34 62-95 72-105 (376)
412 4b4t_M 26S protease regulatory 93.9 0.033 1.1E-06 64.0 4.1 36 514-549 212-247 (434)
413 2v9p_A Replication protein E1; 93.9 0.067 2.3E-06 58.6 6.4 34 58-91 122-155 (305)
414 1ji0_A ABC transporter; ATP bi 93.9 0.023 8E-07 59.9 2.7 24 518-541 33-56 (240)
415 2i3b_A HCR-ntpase, human cance 93.9 0.029 9.9E-07 57.1 3.3 23 64-86 3-25 (189)
416 1g6h_A High-affinity branched- 93.8 0.023 8E-07 60.5 2.7 24 518-541 34-57 (257)
417 4b4t_L 26S protease subunit RP 93.8 0.034 1.2E-06 63.9 4.1 35 514-548 212-246 (437)
418 2wsm_A Hydrogenase expression/ 93.8 0.073 2.5E-06 54.2 6.2 27 60-86 28-54 (221)
419 2z4s_A Chromosomal replication 93.8 0.069 2.4E-06 61.4 6.7 54 33-86 96-154 (440)
420 2pze_A Cystic fibrosis transme 93.8 0.025 8.4E-07 59.3 2.6 24 518-541 35-58 (229)
421 1g41_A Heat shock protein HSLU 93.8 0.037 1.3E-06 63.7 4.3 34 62-95 50-83 (444)
422 2qby_B CDC6 homolog 3, cell di 93.8 0.08 2.7E-06 58.6 6.9 41 45-86 29-69 (384)
423 2olj_A Amino acid ABC transpor 93.8 0.025 8.4E-07 60.7 2.6 24 518-541 51-74 (263)
424 3sop_A Neuronal-specific septi 93.8 0.032 1.1E-06 60.0 3.5 24 518-541 3-26 (270)
425 2zu0_C Probable ATP-dependent 93.7 0.029 9.8E-07 60.2 3.2 23 518-540 47-69 (267)
426 3d8b_A Fidgetin-like protein 1 93.7 0.062 2.1E-06 59.9 6.0 32 516-547 116-147 (357)
427 2pcj_A ABC transporter, lipopr 93.7 0.025 8.4E-07 59.1 2.5 24 63-86 31-54 (224)
428 2c9o_A RUVB-like 1; hexameric 93.7 0.064 2.2E-06 61.8 6.3 34 516-549 62-97 (456)
429 2px0_A Flagellar biosynthesis 93.7 0.033 1.1E-06 60.8 3.6 36 61-96 104-145 (296)
430 2v3c_C SRP54, signal recogniti 93.7 0.026 8.9E-07 64.9 2.9 37 516-552 98-139 (432)
431 1sxj_E Activator 1 40 kDa subu 93.7 0.036 1.2E-06 61.0 3.9 25 516-541 36-60 (354)
432 3v9p_A DTMP kinase, thymidylat 93.7 0.028 9.7E-07 59.0 3.0 58 628-689 151-210 (227)
433 1sgw_A Putative ABC transporte 93.7 0.022 7.5E-07 59.2 2.1 23 519-541 37-59 (214)
434 2onk_A Molybdate/tungstate ABC 93.7 0.033 1.1E-06 58.9 3.4 24 63-86 25-48 (240)
435 3hu3_A Transitional endoplasmi 93.7 0.063 2.2E-06 62.7 6.1 35 60-94 236-270 (489)
436 1vpl_A ABC transporter, ATP-bi 93.7 0.026 9E-07 60.2 2.6 24 518-541 42-65 (256)
437 2ghi_A Transport protein; mult 93.6 0.027 9.2E-07 60.2 2.7 24 518-541 47-70 (260)
438 1hqc_A RUVB; extended AAA-ATPa 93.6 0.062 2.1E-06 58.2 5.6 30 516-545 37-66 (324)
439 4dzz_A Plasmid partitioning pr 93.6 0.079 2.7E-06 53.2 6.0 34 62-95 1-40 (206)
440 2ixe_A Antigen peptide transpo 93.6 0.027 9.3E-07 60.6 2.7 24 518-541 46-69 (271)
441 3n70_A Transport activator; si 93.6 0.052 1.8E-06 52.2 4.4 22 65-86 27-48 (145)
442 3gfo_A Cobalt import ATP-bindi 93.6 0.029 1E-06 60.5 2.9 24 63-86 35-58 (275)
443 2v3c_C SRP54, signal recogniti 93.6 0.05 1.7E-06 62.5 5.0 38 61-98 98-140 (432)
444 2cbz_A Multidrug resistance-as 93.6 0.03 1E-06 58.9 2.9 24 63-86 32-55 (237)
445 2cvh_A DNA repair and recombin 93.6 0.044 1.5E-06 55.6 4.1 36 515-550 18-55 (220)
446 4b4t_J 26S protease regulatory 93.6 0.035 1.2E-06 63.1 3.6 35 515-549 180-214 (405)
447 1sxj_C Activator 1 40 kDa subu 93.6 0.067 2.3E-06 58.9 5.8 41 46-87 31-71 (340)
448 2og2_A Putative signal recogni 93.6 0.072 2.5E-06 59.7 6.1 26 61-86 156-181 (359)
449 4g1u_C Hemin import ATP-bindin 93.5 0.03 1E-06 60.1 2.9 24 63-86 38-61 (266)
450 3jvv_A Twitching mobility prot 93.5 0.055 1.9E-06 60.6 5.1 32 63-94 124-159 (356)
451 2yz2_A Putative ABC transporte 93.5 0.029 9.9E-07 60.2 2.7 24 518-541 34-57 (266)
452 2yhs_A FTSY, cell division pro 93.5 0.14 4.9E-06 59.6 8.6 26 61-86 292-317 (503)
453 2qi9_C Vitamin B12 import ATP- 93.5 0.03 1E-06 59.6 2.6 24 518-541 27-50 (249)
454 3tmk_A Thymidylate kinase; pho 93.5 0.04 1.4E-06 57.3 3.6 28 516-543 4-31 (216)
455 3tqf_A HPR(Ser) kinase; transf 93.4 0.043 1.5E-06 55.3 3.6 35 518-553 17-51 (181)
456 2qm8_A GTPase/ATPase; G protei 93.4 0.067 2.3E-06 59.3 5.6 35 507-541 45-79 (337)
457 3tmk_A Thymidylate kinase; pho 93.4 0.043 1.5E-06 57.2 3.7 28 61-88 4-31 (216)
458 2ihy_A ABC transporter, ATP-bi 93.4 0.03 1E-06 60.5 2.6 24 518-541 48-71 (279)
459 2nq2_C Hypothetical ABC transp 93.4 0.031 1.1E-06 59.5 2.7 24 518-541 32-55 (253)
460 3b85_A Phosphate starvation-in 93.4 0.031 1.1E-06 57.8 2.6 23 63-85 23-45 (208)
461 1fnn_A CDC6P, cell division co 93.4 0.097 3.3E-06 57.9 6.8 23 519-541 46-68 (389)
462 2qby_B CDC6 homolog 3, cell di 93.4 0.093 3.2E-06 58.1 6.7 28 514-541 42-69 (384)
463 2d2e_A SUFC protein; ABC-ATPas 93.4 0.04 1.4E-06 58.5 3.5 23 63-85 30-52 (250)
464 2ff7_A Alpha-hemolysin translo 93.4 0.035 1.2E-06 58.9 2.9 24 63-86 36-59 (247)
465 1um8_A ATP-dependent CLP prote 93.3 0.041 1.4E-06 61.5 3.6 32 518-549 73-104 (376)
466 3syl_A Protein CBBX; photosynt 93.3 0.077 2.6E-06 57.1 5.7 27 60-86 65-91 (309)
467 2w0m_A SSO2452; RECA, SSPF, un 93.3 0.047 1.6E-06 55.7 3.9 25 62-86 23-47 (235)
468 1mv5_A LMRA, multidrug resista 93.3 0.035 1.2E-06 58.6 2.9 25 62-86 28-52 (243)
469 1b0u_A Histidine permease; ABC 93.3 0.035 1.2E-06 59.4 2.9 24 63-86 33-56 (262)
470 2dhr_A FTSH; AAA+ protein, hex 93.3 0.064 2.2E-06 62.8 5.3 31 64-94 66-96 (499)
471 1ypw_A Transitional endoplasmi 93.3 0.047 1.6E-06 67.6 4.4 36 60-95 236-271 (806)
472 1lw7_A Transcriptional regulat 93.3 0.046 1.6E-06 61.1 3.9 28 62-89 170-197 (365)
473 1lw7_A Transcriptional regulat 93.3 0.04 1.4E-06 61.6 3.4 27 518-544 171-197 (365)
474 4fcw_A Chaperone protein CLPB; 93.3 0.058 2E-06 58.1 4.6 24 518-541 48-71 (311)
475 2qp9_X Vacuolar protein sortin 93.3 0.043 1.5E-06 61.2 3.7 31 518-548 85-115 (355)
476 4b4t_H 26S protease regulatory 93.3 0.045 1.6E-06 63.1 3.9 35 515-549 241-275 (467)
477 1ji0_A ABC transporter; ATP bi 93.2 0.037 1.3E-06 58.3 2.9 24 63-86 33-56 (240)
478 1g41_A Heat shock protein HSLU 93.2 0.043 1.5E-06 63.2 3.6 34 517-550 50-83 (444)
479 1jr3_A DNA polymerase III subu 93.2 0.091 3.1E-06 57.9 6.2 32 513-544 34-65 (373)
480 3syl_A Protein CBBX; photosynt 93.2 0.078 2.7E-06 57.0 5.6 26 516-541 66-91 (309)
481 2j37_W Signal recognition part 93.2 0.041 1.4E-06 64.5 3.5 38 514-551 98-140 (504)
482 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.049 1.7E-06 59.9 4.0 30 517-546 45-75 (322)
483 1g6h_A High-affinity branched- 93.2 0.038 1.3E-06 58.8 2.9 24 63-86 34-57 (257)
484 1fnn_A CDC6P, cell division co 93.2 0.11 3.8E-06 57.4 6.9 50 44-93 25-79 (389)
485 2gza_A Type IV secretion syste 93.1 0.03 1E-06 62.8 2.1 25 518-542 176-200 (361)
486 2pze_A Cystic fibrosis transme 93.1 0.039 1.3E-06 57.7 2.9 24 63-86 35-58 (229)
487 1sxj_A Activator 1 95 kDa subu 93.1 0.049 1.7E-06 63.8 4.1 33 517-549 77-109 (516)
488 2qby_A CDC6 homolog 1, cell di 93.1 0.046 1.6E-06 60.2 3.6 46 504-549 29-83 (386)
489 2zu0_C Probable ATP-dependent 93.1 0.045 1.6E-06 58.7 3.4 23 63-85 47-69 (267)
490 2dr3_A UPF0273 protein PH0284; 93.1 0.048 1.7E-06 56.3 3.5 25 517-541 23-47 (247)
491 2ewv_A Twitching motility prot 93.1 0.047 1.6E-06 61.5 3.6 26 516-541 135-160 (372)
492 2olj_A Amino acid ABC transpor 93.1 0.04 1.4E-06 59.1 2.9 25 62-86 50-74 (263)
493 2www_A Methylmalonic aciduria 93.1 0.073 2.5E-06 59.3 5.2 42 508-549 63-111 (349)
494 4fcw_A Chaperone protein CLPB; 93.1 0.12 4.2E-06 55.4 6.8 24 63-86 48-71 (311)
495 1n0w_A DNA repair protein RAD5 93.1 0.044 1.5E-06 56.6 3.2 25 516-540 23-47 (243)
496 1sxj_E Activator 1 40 kDa subu 93.1 0.049 1.7E-06 59.8 3.7 39 47-86 21-60 (354)
497 3n70_A Transport activator; si 93.1 0.057 2E-06 51.9 3.7 22 520-541 27-48 (145)
498 1sgw_A Putative ABC transporte 93.0 0.035 1.2E-06 57.7 2.3 24 63-86 36-59 (214)
499 2pt7_A CAG-ALFA; ATPase, prote 93.0 0.057 1.9E-06 59.7 4.2 25 63-87 172-196 (330)
500 3nh6_A ATP-binding cassette SU 93.0 0.032 1.1E-06 61.2 2.1 24 518-541 81-104 (306)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=3e-26 Score=254.43 Aligned_cols=242 Identities=17% Similarity=0.207 Sum_probs=179.9
Q ss_pred ccccccccceecccCCCcCCC--ccccCCCcccceecccCCCCc-cchhhhHHHHHHHHHHH-------H--cCCCCEEE
Q 002197 453 KMEPVLATWHFISSDPSHAGS--SVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQALL-------E--NKGLPVIV 520 (954)
Q Consensus 453 ~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l-~~~e~~~~~i~~i~~l~-------~--~~~~p~iI 520 (954)
-+.....+|+.+..+.+++|+ ++-...++++.+.+..+.+-| ++.+.+.+.....+.+. . ..+.|++|
T Consensus 16 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~ii 95 (321)
T 3tqc_A 16 YLQFNRQQWGNFRKDTPLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYII 95 (321)
T ss_dssp EEEEEHHHHTC------CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEE
T ss_pred ceEECHHHHHHHhcCCCCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEE
Confidence 345788999977777766655 455566777777665554444 34443333333333321 2 24678999
Q ss_pred eeeCCCCccHHHHHHHHHHHhC-------Cceeccccccchhhh----c-cccCCCCCcccHHHHHHHHHHHHcCC-cee
Q 002197 521 GIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----K-DFKYDDFSSLDLSLLSKNISDIRNGR-RTK 587 (954)
Q Consensus 521 GIsGpsGSGKTTlA~~La~~Lg-------~~vIs~Ddfy~~~~~----~-~~n~d~p~t~D~~lL~~~L~~L~~g~-~v~ 587 (954)
||+||+|||||||++.|+..++ +.++++|+||.+... . ..+++.|+++|.+++.+.|..+++|+ .+.
T Consensus 96 gI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~ 175 (321)
T 3tqc_A 96 GIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVR 175 (321)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEE
T ss_pred EEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccc
Confidence 9999999999999999998874 568999999987332 1 12467899999999999999999999 899
Q ss_pred cccccccccccCCccceeeccCccEEEEEeecccchh-----------hhhcCCeEEEEEcChhHHHHHHHhcCcccccc
Q 002197 588 VPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-----------IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (954)
Q Consensus 588 ~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~-----------l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~ 656 (954)
+|.||+.++++.+. .+....+.+|||+||++++++. +.+.+|++|||+++.+.++.|++.||...+|.
T Consensus 176 ~P~yd~~~~~r~~~-~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~ 254 (321)
T 3tqc_A 176 IPVYSHHYYDIVRG-QYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRT 254 (321)
T ss_dssp EEEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhhccccccC-ceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhh
Confidence 99999999998742 3344567899999999999844 88999999999999999999999999887763
Q ss_pred ccc---------------h------hhHHhhhcchhhhhcccccCcccEEEcCCCCCCCC
Q 002197 657 FMS---------------Q------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS 695 (954)
Q Consensus 657 ~~~---------------~------~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~rl~ 695 (954)
... + .+|.....|.+++||.|++.+||+||+.+-+...+
T Consensus 255 a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~~v~ 314 (321)
T 3tqc_A 255 TFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSIQ 314 (321)
T ss_dssp GGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTSCEE
T ss_pred hccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCCcEE
Confidence 211 0 22333456999999999999999999888776543
No 2
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.89 E-value=5.5e-23 Score=228.18 Aligned_cols=198 Identities=16% Similarity=0.193 Sum_probs=162.4
Q ss_pred cccCCcccchhh---hHHHHHHHHHHHH--------------h--cCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----
Q 002197 32 LQSLPVHASFDH---GYYLLVKSIQELR--------------E--KKGGIVTVGIGGPSGSGKTSLAEKLASVIG----- 87 (954)
Q Consensus 32 ~~~~~~~~s~d~---~~~~lv~~i~~~~--------------~--~~~~~~IIgItG~sGSGKSTlA~~La~~Lg----- 87 (954)
++++++.+|+++ +|.+|++.+.... . ..++|++|||+|++||||||+++.|+..++
T Consensus 43 ~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~ 122 (321)
T 3tqc_A 43 LQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDH 122 (321)
T ss_dssp TTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTC
T ss_pred hhCCCCCcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCC
Confidence 689999999655 8999998876542 1 245689999999999999999999999875
Q ss_pred --CeEEeccccccc---------cccCCCCCcccHHHHHHHHHhhhcCC-ccccccchhhhhccccccccccCCCcEEEE
Q 002197 88 --CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIV 155 (954)
Q Consensus 88 --~~VIs~Dd~y~~---------~~~~~~p~s~D~~~l~~~L~~l~~g~-~i~~p~~d~~~~~~~~~~~~~~~~~~vVIv 155 (954)
+.++++|+||.. ....+.|+++|.+.+.+.|..++.|+ .+..|.|++..+++.........+.+++|+
T Consensus 123 ~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIv 202 (321)
T 3tqc_A 123 PNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVIL 202 (321)
T ss_dssp CCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEE
T ss_pred CeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEE
Confidence 678999999763 12467799999999999999999998 899999999999987544444566789999
Q ss_pred Eecccchhh-----------hhcCCCEEEEEEcCHHHHHHHHHHhccCCc----------------cCHHHH-------H
Q 002197 156 DGTYALDAR-----------LRSLLDIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSL-------I 201 (954)
Q Consensus 156 EG~~ll~~~-----------l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r----------------~~~e~~-------~ 201 (954)
||+++++.. +.+++|++|||+++.++++.|++.||...+ .+.+++ |
T Consensus 203 EGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w 282 (321)
T 3tqc_A 203 EGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVW 282 (321)
T ss_dssp ECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHH
T ss_pred EccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999855 889999999999999999999999995432 122222 2
Q ss_pred Hhh-chhhhhccCCCcCcccEEEECCCCC
Q 002197 202 DSI-FPLFRKHIEPDLHHAQIRINNRFVS 229 (954)
Q Consensus 202 ~~v-~p~~~~~Iep~~~~ADiII~N~~~~ 229 (954)
..+ .|++++||.|++.+||+||+.+-++
T Consensus 283 ~~~~~pn~~~~I~ptr~~Adlil~~g~~~ 311 (321)
T 3tqc_A 283 NEINKVNLMENILPYKNRAQLILEKAADH 311 (321)
T ss_dssp HHTHHHHHHHHTGGGGGGCSEEEEECTTS
T ss_pred HhccccCHHHhCccCccCceEEEecCCCC
Confidence 222 5889999999999999999887554
No 3
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=99.86 E-value=7.4e-22 Score=201.77 Aligned_cols=128 Identities=12% Similarity=0.119 Sum_probs=114.1
Q ss_pred cccccccccceeccccCCCCcccccccCCceeEeeeC--CeEEEEEcceeccCCCccccceeEEEeeh----hHHHHHHh
Q 002197 253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLD 326 (954)
Q Consensus 253 ~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~--~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~~~~~L~~ 326 (954)
+.....++|+||+.|.++++.++.++ |||..+ ++..+|||||+.+ .+.|+.| +|.++|.+
T Consensus 35 ~~~~~~q~d~yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~~t~Kgp~~~---------~~~e~~v~d~~~~~~iL~~ 100 (179)
T 3ghx_A 35 FTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGPGAE---------RCEASNIEDVSKVQSMLAT 100 (179)
T ss_dssp EEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECSSSS---------BEEEEECSCHHHHHHHHHH
T ss_pred ccCcceEEEEEEeCCCccHHHCCcEE-----EEEEecCCCcEEEEEecCCCC---------cEEEEEcCCHHHHHHHHHH
Confidence 56678899999999999999999988 999873 6789999999864 2456677 89999999
Q ss_pred cCCceeEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEec--Ch-------hHHHHHHHHcCCCCCc-cchhHHHHHH
Q 002197 327 LGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGPW-ITKSYLEMVL 395 (954)
Q Consensus 327 LGf~~~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~--~~-------~~v~~~a~~Lgl~~~~-~~~sYlel~l 395 (954)
|||.+++.++|.|++|.+++++|+||+|+|||. |+|||.+ ++ +.+.+++++|||+++. +++||++|++
T Consensus 101 LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG~-f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY~eLl~ 178 (179)
T 3ghx_A 101 LGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLLG 178 (179)
T ss_dssp TTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHHT
T ss_pred CCCcEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehhHHHHhh
Confidence 999999999999999999999999999999998 9999987 22 6889999999999865 9999999985
No 4
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.84 E-value=5.2e-21 Score=211.60 Aligned_cols=176 Identities=19% Similarity=0.191 Sum_probs=142.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-------Cceeccccccchhhh-c---c-ccCCCCCcccHHHHHHHHHHHHc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV-K---D-FKYDDFSSLDLSLLSKNISDIRN 582 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg-------~~vIs~Ddfy~~~~~-~---~-~n~d~p~t~D~~lL~~~L~~L~~ 582 (954)
+++.+|||+||+|||||||++.|+..++ +.++++|+++.+... . - .+++.|+++|...+...+..+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~ 157 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhC
Confidence 5678999999999999999999999876 678999999875321 1 1 23567889999999999999999
Q ss_pred CCc-eecccccccccccCCccceeeccCccEEEEEeecccch-----------hhhhcCCeEEEEEcChhHHHHHHHhcC
Q 002197 583 GRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----------EIRKSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 583 g~~-v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~-----------~l~~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
|.. +.+|.||+..+++.+. .+....+.++||+||++++++ .+.+.+|.+|||++|.+.++.|++.|+
T Consensus 158 ~~~~i~~P~~~~~~~~~~~~-~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~ 236 (308)
T 1sq5_A 158 GVPNVTAPVYSHLIYDVIPD-GDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRF 236 (308)
T ss_dssp TCSCEEECCEETTTTEECTT-CCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCceecccccccccCcccc-cceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 988 9999999999988753 223334568999999999975 688999999999999999999999997
Q ss_pred cccc---------------ccccch------hhHHhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 651 KSRM---------------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 651 ~~~r---------------g~~~~~------~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
...+ |.+.++ .||...++|++.+||+|++.+||+||+|+-+
T Consensus 237 ~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~ 298 (308)
T 1sq5_A 237 LKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSAN 298 (308)
T ss_dssp HHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred HHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCC
Confidence 5322 333332 3555667899999999999999999998754
No 5
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=99.84 E-value=5.6e-21 Score=195.19 Aligned_cols=134 Identities=18% Similarity=0.282 Sum_probs=114.5
Q ss_pred ccccccccccccceeccccCCCCcccccccCCceeEeee--CCeEEEEEcceeccCCCccccceeEEEeeh----hHHHH
Q 002197 250 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGG 323 (954)
Q Consensus 250 ~~~~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~--~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~~~~~ 323 (954)
++.+.....|.|.||+.|++ .|||||.. ++++.||||||. ++.. |.+.|+|+.| .|.++
T Consensus 30 g~~~~~~~~Q~d~Yfd~p~~-----------~~LRIR~~~~~~~~~lT~K~p~-~g~~---k~~~E~e~~v~d~~~~~~i 94 (179)
T 1yem_A 30 NPEFVRYEEQEDVYFEVPRP-----------KLLRIRGVHNLKKYYLTFKEIL-DENN---EEFYEVEFEIGDFEKAVEV 94 (179)
T ss_dssp CCEEEEEEEEEEEEECCCTT-----------EEEEEEEETTTTEEEEEEEEEC-SSSS---CEEEEEEEEESCHHHHHHH
T ss_pred CCccCcceEEEEEEEcCCCC-----------CEEEEEEEcCCCeEEEEEeccC-CCCc---cceeEEEEEeCCHHHHHHH
Confidence 34566677899999999865 45599954 889999999998 5443 9999999999 78899
Q ss_pred HHhcCCceeEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEecC------hhHHHHHHHHcCCCCCc-cchhHHHHHHh
Q 002197 324 LLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGPW-ITKSYLEMVLE 396 (954)
Q Consensus 324 L~~LGf~~~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~~------~~~v~~~a~~Lgl~~~~-~~~sYlel~l~ 396 (954)
|..|||.+...++|.|..|.+++++|+||+++|+|. |+|||.+. .+.+.+++++|||+.+. +++||+||+++
T Consensus 95 L~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG~-f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~eLl~~ 173 (179)
T 1yem_A 95 FKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGD-FVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELINE 173 (179)
T ss_dssp HHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC--
T ss_pred HHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCCC-EEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHHHHHh
Confidence 999999999999999999999999999999999997 99999873 47899999999999874 99999999988
Q ss_pred hcC
Q 002197 397 KKG 399 (954)
Q Consensus 397 ~~~ 399 (954)
+.+
T Consensus 174 ~~~ 176 (179)
T 1yem_A 174 LSG 176 (179)
T ss_dssp ---
T ss_pred hhc
Confidence 654
No 6
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=99.84 E-value=5.9e-21 Score=195.74 Aligned_cols=140 Identities=21% Similarity=0.324 Sum_probs=122.6
Q ss_pred cccccccccccceeccccCCCCcccccccCCceeEe----eeCCeEEEEEcceeccCCCccccceeEEEeehh-----HH
Q 002197 251 SAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR----QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM-----TL 321 (954)
Q Consensus 251 ~~~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR----~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v~-----~~ 321 (954)
+.+.....+.|.||+.|+++++.++.+| ||| ..+++..+|||||+.++.. ++|.|+|+.|. +.
T Consensus 22 ~~~~~~~~q~d~YfDtp~~~L~~~~~~L-----RiR~~~~~~~~~~~lT~K~p~~~~~~---~~r~E~e~~v~~~~~~~~ 93 (183)
T 2een_A 22 FEFMRKEIHEDIYYQHPCRDFSKTDEAL-----RIRIKRFNGHNEVFLTYKGPKIDEKS---KTRLEIEVEIQEDVDKYF 93 (183)
T ss_dssp SEEEEEEEEEEEEEECSSSCHHHHTCEE-----EEEEEEETTEEEEEEEEEEEECCTTS---CCEEEEEEEECSCHHHHH
T ss_pred CccCccEEEEEeEEcCCCccHHhCCeEE-----EEeeeecCCCCEEEEEECCCcCCCCc---eeEEEEEEeecCCHHHHH
Confidence 3455567799999999999999999888 999 4467899999999876544 89999999986 89
Q ss_pred HHHHhcCCceeEEEEEEEEEEEeC-CEEEEEecCCCCCCCeEEEEec--C-------hhHHHHHHHHcCCCCCccchhHH
Q 002197 322 GGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGPWITKSYL 391 (954)
Q Consensus 322 ~~L~~LGf~~~~~v~K~R~~~~~~-~~~i~lD~v~~lG~~FvEiE~~--~-------~~~v~~~a~~Lgl~~~~~~~sYl 391 (954)
.+|..|||.++++++|.|+.|.++ +++|+||+++++|. |+|||.+ + .+.+.+++++||| .+.+++||+
T Consensus 94 ~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY~ 171 (183)
T 2een_A 94 ELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSYL 171 (183)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCHH
T ss_pred HHHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccHH
Confidence 999999999999999999999999 99999999999999 9999986 2 2678999999999 667999999
Q ss_pred HHHHhhcCC
Q 002197 392 EMVLEKKGV 400 (954)
Q Consensus 392 el~l~~~~~ 400 (954)
+|++++.+.
T Consensus 172 ell~~~~~~ 180 (183)
T 2een_A 172 ELLLEKRTE 180 (183)
T ss_dssp HHHHHTC--
T ss_pred HHHHhhhhh
Confidence 999987554
No 7
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.83 E-value=6.8e-21 Score=209.07 Aligned_cols=176 Identities=15% Similarity=0.299 Sum_probs=136.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccc-hh-hh--------c--cccCCC--CCcccHHHHHH
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SE-QV--------K--DFKYDD--FSSLDLSLLSK 575 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~-~~-~~--------~--~~n~d~--p~t~D~~lL~~ 575 (954)
.++++|||+||+||||||+|+.|++.+| +.+|++|+||+ +. .. . ..+++. |+++|.+.+.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~ 82 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELER 82 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHH
Confidence 3577999999999999999999999887 78999999997 22 11 1 124444 99999999999
Q ss_pred HHHHHHcCCceecccccc-----cccccCCc--cceeec-cCccEEEEEeeccc----chhhhhcCCeEEEEEcChhHHH
Q 002197 576 NISDIRNGRRTKVPIFDL-----ETGARSGF--KELEVS-EDCGVIIFEGVYAL----HPEIRKSLDLWIAVVGGVHSHL 643 (954)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~-----~~~dr~~~--~~~~~~-~~~dVVIvEG~~~~----~~~l~~~~D~~I~v~~~~d~rl 643 (954)
.+..+..++.+..|.|++ ..+.+... ..|... .+.+++|+||++++ +..+.+.+|.+|||+++.+.++
T Consensus 83 ~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 83 VFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHH
Confidence 999999999999999965 33443321 112222 35789999999998 3678889999999999999999
Q ss_pred HHHHhcCccccccccch-hhHHhhhcchhhhhcccccCcccE------EEcCCC
Q 002197 644 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHL------KIRNDF 690 (954)
Q Consensus 644 ~Rri~RD~~~rg~~~~~-~q~~~~v~p~~~~~Iep~~~~ADi------vI~n~~ 690 (954)
.|++.||...+|.+.+. .+......|.+.+||+|.+.+||+ +|+|+.
T Consensus 163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 163 IQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHHhhhhhhhcCCChHHHHHHHHHhCccHHHhhhhhhccCCEeeccCceecCCC
Confidence 99999999999988775 233333489999999999999999 677653
No 8
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.83 E-value=2.5e-20 Score=199.91 Aligned_cols=172 Identities=27% Similarity=0.496 Sum_probs=141.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCc----------eeccccccch---h-----hhccccCCCCCcccHHHHHH
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKS---E-----QVKDFKYDDFSSLDLSLLSK 575 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~----------vIs~Ddfy~~---~-----~~~~~n~d~p~t~D~~lL~~ 575 (954)
.++|++|||+|++||||||+|+.|++.+|+. ++++|+||+. . ..+...|++|+++|.+++.+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHH
Confidence 4568999999999999999999999999977 7999999974 1 12345788999999999999
Q ss_pred HHHHHHcCCceecccccccccccCCccceeeccCccEEEEEeeccc-chhhhhcCCeEEEEEcChhHHHHHHHhcCcccc
Q 002197 576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 654 (954)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~r 654 (954)
.|..+..+..+..|.||+..+.+.. .+....+.++||+||++++ .+.+.+.+|.+||++++.+.++.|+..|+...+
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~--~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~r 176 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKE--ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISER 176 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEE--EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCeeecCccccccccCCC--ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987762 2322345689999999997 578888899999999999999999999976555
Q ss_pred ccccch--hhHHhhhcchhhhhcccccCcccEEEc
Q 002197 655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (954)
Q Consensus 655 g~~~~~--~q~~~~v~p~~~~~Iep~~~~ADivI~ 687 (954)
|.+.+. .++.....+.+..+++|....||++|+
T Consensus 177 g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 177 GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 655443 244445567788899999999999994
No 9
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=99.81 E-value=7.9e-20 Score=186.70 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=114.0
Q ss_pred ccccccccccceeccccCCCCcccccccCCceeEeee--CCeEEEEEcceeccCCCccccceeEEEeeh----hHHHHHH
Q 002197 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL 325 (954)
Q Consensus 252 ~~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~--~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~~~~~L~ 325 (954)
.+.....+.|.||+.|+++++.++.++ |||.. +...++|||||+ .+.|.|+.| .+..+|.
T Consensus 34 ~~~~~~~q~d~Yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~lt~kg~~---------~~~e~e~~v~~~~~~~~~l~ 99 (179)
T 3n10_A 34 AFTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGPG---------AERCEASNIEDVSKVQSMLA 99 (179)
T ss_dssp EEEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECSS---------SSBEEEEECSCHHHHHHHHH
T ss_pred cccceEEEEEEEEeCCChhHHhCCceE-----EEEecCCCceEEEEEcCCc---------cccceeeccCCHHHHHHHHH
Confidence 455677889999999999999988888 99976 457889999763 567888888 8999999
Q ss_pred hcCCceeEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEec--Ch-------hHHHHHHHHcCCCCCc-cchhHHHHH
Q 002197 326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGPW-ITKSYLEMV 394 (954)
Q Consensus 326 ~LGf~~~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~--~~-------~~v~~~a~~Lgl~~~~-~~~sYlel~ 394 (954)
.|||.++++++|.|++|.+++++|+||+|+|+|. |+|||.+ +. +.+.+++++|||+.+. +++||+|||
T Consensus 100 ~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lG~-f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 100 TLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp HTTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred hCCCeEEEEEEEEEEEEEECCEEEEEEeccCCCc-EEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 9999999999999999999999999999999999 9999987 22 5689999999999876 899999997
No 10
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.80 E-value=2.4e-19 Score=198.21 Aligned_cols=197 Identities=15% Similarity=0.183 Sum_probs=150.2
Q ss_pred ccccCCcccchhh---hHHHHHHHHHHHH----------------hcCCCcEEEEEECCCCCcHHHHHHHHHHHhC----
Q 002197 31 ILQSLPVHASFDH---GYYLLVKSIQELR----------------EKKGGIVTVGIGGPSGSGKTSLAEKLASVIG---- 87 (954)
Q Consensus 31 ~~~~~~~~~s~d~---~~~~lv~~i~~~~----------------~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg---- 87 (954)
.+.+++..+++++ .|.++++.+.... ....++.+|||+|++||||||+++.|+..++
T Consensus 30 ~~~~~~~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 30 RLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp HHHHHCTTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred hhhCCccccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 3455666777555 6767777665433 1235678999999999999999999999876
Q ss_pred ---CeEEeccccccc---------cccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCCcEEE
Q 002197 88 ---CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVI 154 (954)
Q Consensus 88 ---~~VIs~Dd~y~~---------~~~~~~p~s~D~~~l~~~L~~l~~g~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVI 154 (954)
+.+|++|+++.. +...+.+..++...+...+..+..+.. +.+|.|++..+.+.........+.+++|
T Consensus 110 ~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivI 189 (308)
T 1sq5_A 110 HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILI 189 (308)
T ss_dssp CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEE
T ss_pred CCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEE
Confidence 778999998752 122445678898988888888888877 9999999999887654333334568999
Q ss_pred EEecccchh-----------hhhcCCCEEEEEEcCHHHHHHHHHHhccC-----C-----------ccCHHH---HHHh-
Q 002197 155 VDGTYALDA-----------RLRSLLDIRVAVVGGVHFSLISKVQYDIG-----D-----------SCSLDS---LIDS- 203 (954)
Q Consensus 155 vEG~~ll~~-----------~l~~~~D~~I~Vda~~~~rl~Rri~RD~~-----~-----------r~~~e~---~~~~- 203 (954)
+||+++++. .+.+++|.+|||++|.++++.|++.|+.. . ..+.++ ++..
T Consensus 190 lEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q 269 (308)
T 1sq5_A 190 LEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTL 269 (308)
T ss_dssp EECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHH
T ss_pred ECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHH
Confidence 999999986 68899999999999999999999999731 0 123333 2332
Q ss_pred ----hchhhhhccCCCcCcccEEEECCC
Q 002197 204 ----IFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 204 ----v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
..|++.+||+|.+++||+||+|+-
T Consensus 270 ~~~~~~~~~~~~i~~~~~~AD~vI~n~~ 297 (308)
T 1sq5_A 270 WKEINWLNLKQNILPTRERASLILTKSA 297 (308)
T ss_dssp HHHTHHHHHHHTTGGGGGGCSEEEEECG
T ss_pred HHhccHHHHHHHcccccccCcEEEEeCC
Confidence 246788999999999999999983
No 11
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.80 E-value=1.2e-19 Score=199.16 Aligned_cols=179 Identities=18% Similarity=0.277 Sum_probs=136.3
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Ccee-ccccccchhhhc-cc-----------cCCCCCcccHHH
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVV-SLESYFKSEQVK-DF-----------KYDDFSSLDLSL 572 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg-------~~vI-s~Ddfy~~~~~~-~~-----------n~d~p~t~D~~l 572 (954)
..+++.+|||+|++||||||||+.|+..++ +.++ ++|+||.+.... .. .++.|+++|.++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 456789999999999999999999998874 4556 999999874321 11 134699999999
Q ss_pred HHHHHHHHHcC------Cceecccccccc----cccCCccceeeccCccEEEEEeecccc-hh-----------------
Q 002197 573 LSKNISDIRNG------RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALH-PE----------------- 624 (954)
Q Consensus 573 L~~~L~~L~~g------~~v~~P~yD~~~----~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~----------------- 624 (954)
+.+.|..++.| +.+.+|.||+.. ++|.+...+... +.+|+|+||++++. +.
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~ 185 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV 185 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHH
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHH
Confidence 99999999998 778999999999 888764334445 78999999999853 43
Q ss_pred ----------hhhcCCeE---EEEEcChhHHHHH-HHhc--C-cccc--ccccch-hhHHhhhcchhhhhccccc-----
Q 002197 625 ----------IRKSLDLW---IAVVGGVHSHLIS-RVQR--D-KSRM--GCFMSQ-NDIMMTVFPMFQQHIEPHL----- 679 (954)
Q Consensus 625 ----------l~~~~D~~---I~v~~~~d~rl~R-ri~R--D-~~~r--g~~~~~-~q~~~~v~p~~~~~Iep~~----- 679 (954)
+++++|++ |||+++.+.++.| |+.| | ..++ |.+.++ .+|...++|+|+.|++|..
T Consensus 186 n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~~~~~~~~~~~ 265 (290)
T 1odf_A 186 NAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESL 265 (290)
T ss_dssp HHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchHHHHhHHHHHhccC
Confidence 34456666 9999988777777 8888 5 2334 666654 5788889999888887532
Q ss_pred -CcccEEEcCCCCC
Q 002197 680 -VHAHLKIRNDFDP 692 (954)
Q Consensus 680 -~~ADivI~n~~~~ 692 (954)
..||+++..+-+.
T Consensus 266 ~~~adlvl~~~~~~ 279 (290)
T 1odf_A 266 GSIATLTLGIDSNR 279 (290)
T ss_dssp SSSEEEEEEECTTS
T ss_pred CCCCCEEEEECCCC
Confidence 3789988765443
No 12
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.79 E-value=5.1e-19 Score=196.09 Aligned_cols=240 Identities=18% Similarity=0.238 Sum_probs=171.3
Q ss_pred ccccccccceecccCCCcCCCc--cccCCCcccceecccCCCCc-cchhhhHHHHHHHHHHH------------H-cCCC
Q 002197 453 KMEPVLATWHFISSDPSHAGSS--VIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQALL------------E-NKGL 516 (954)
Q Consensus 453 ~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~e~~~~~i~~i~~l~------------~-~~~~ 516 (954)
-+.....+|+.+....+..+++ +....++++.+.+..+-..| +..+.+.+.+.+.+.+. . ..++
T Consensus 10 ~~~~~r~~~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (312)
T 3aez_A 10 YVEFDRRQWRALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPV 89 (312)
T ss_dssp EEEEEHHHHHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCC
T ss_pred ceeECHHHHHHHHhcCCCCCCHHHHHhccCCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCC
Confidence 3457889999667665555544 34444556655554333333 22222222233333332 0 1467
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC-------Cceeccccccchhhhc----cc-cCCCCCcccHHHHHHHHHHHHcCC
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQVK----DF-KYDDFSSLDLSLLSKNISDIRNGR 584 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg-------~~vIs~Ddfy~~~~~~----~~-n~d~p~t~D~~lL~~~L~~L~~g~ 584 (954)
+.+|||.||+|||||||++.|+..+. +.++++|+||.+.... .. .++.|.++|.+.+.+.|..+..|.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~ 169 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGS 169 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCc
Confidence 79999999999999999999998763 5689999998764211 11 246788999999999999998766
Q ss_pred c-eecccccccccccCCccceeeccCccEEEEEeecccc----hhhhhcCCeEEEEEcChhHHHHHHHhcCcccc-----
Q 002197 585 R-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM----- 654 (954)
Q Consensus 585 ~-v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~r----- 654 (954)
. +..|.|+...+.|.+. ......+.+|+|+||++++. +.+.+.+|.+|||+++.+.++.|++.|+...+
T Consensus 170 ~~~~~~~lS~G~~qRv~~-a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r 248 (312)
T 3aez_A 170 DYACAPVYSHLHYDIIPG-AEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFA 248 (312)
T ss_dssp SCEEEEEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGG
T ss_pred ccCCcccCChhhhhhhhh-HHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcccc
Confidence 5 8889999998888753 23344567999999999986 57899999999999999999999998854322
Q ss_pred ----------ccccch------hhHHhhhcchhhhhcccccCcccEEEcCCCCCC
Q 002197 655 ----------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPV 693 (954)
Q Consensus 655 ----------g~~~~~------~q~~~~v~p~~~~~Iep~~~~ADivI~n~~~~r 693 (954)
|.+.++ .+|...+.|++.+||+|++.+||+||+++-+..
T Consensus 249 ~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~~ 303 (312)
T 3aez_A 249 DPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHS 303 (312)
T ss_dssp STTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTSC
T ss_pred CcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCCc
Confidence 222222 345556789999999999999999999886543
No 13
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=99.78 E-value=8.4e-19 Score=176.71 Aligned_cols=127 Identities=18% Similarity=0.269 Sum_probs=110.9
Q ss_pred ccccccccceeccccCCCCcccccccCCceeEee--eCCeEEEEEcceeccCCCccccceeEEEeeh----hHHHHHHhc
Q 002197 254 QGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLDL 327 (954)
Q Consensus 254 ~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~--~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~~~~~L~~L 327 (954)
.....|.|.||+.|.+ . +||||. .++++.||||||. ++.. +++.|+|+.| .+..+|..|
T Consensus 26 ~~~~~q~d~Yfdt~~~------~-----~LRiR~~~~~~~~~lT~K~~~-~g~~---~~~~E~e~~i~~~~~~~~~L~~l 90 (165)
T 2dc4_A 26 FGIEEQEDVYFELPSP------K-----LLRVRKINNTGKSYITYKEIL-DKRN---EEFYELEFEVQDPEGAIELFKRL 90 (165)
T ss_dssp EEEEEEEEEEECCSTT------E-----EEEEEEETTTTEEEEEEEEEC-SSSS---CEEEEEEEEBSCHHHHHHHHHHT
T ss_pred CcceeEEEEEEcCCCC------C-----EEEEEEEcCCCEEEEEEeCcC-CCCc---eeeeEEEEEcCCHHHHHHHHHHc
Confidence 3456799999998865 3 459995 4889999999998 4434 8999999999 788889999
Q ss_pred CCceeEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEecC------hhHHHHHHHHcCCCCCc-cchhHHHHHHh
Q 002197 328 GYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGPW-ITKSYLEMVLE 396 (954)
Q Consensus 328 Gf~~~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~~------~~~v~~~a~~Lgl~~~~-~~~sYlel~l~ 396 (954)
||.+...++|+|..|.+++++|+||.++|+|. |+|||.+. .+.+.+++++|||+.+. +++||++|+++
T Consensus 91 g~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g~-~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell~~ 165 (165)
T 2dc4_A 91 GFKVQGVVKKRRWIYKLNNVTFELNRVEKAGD-FLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELING 165 (165)
T ss_dssp TCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHCC-
T ss_pred CCcEEEEEEEEEEEEEECCEEEEEEecCCCcc-EEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHhhC
Confidence 99999999999999999999999999999997 99999873 47899999999999874 99999999853
No 14
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.77 E-value=5.1e-19 Score=194.18 Aligned_cols=166 Identities=12% Similarity=0.214 Sum_probs=126.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccc-cc---------------cCCC--CCcccHHHHHHH
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG-VD---------------EGND--LDSIDFDALVQN 117 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~-~~---------------~~~~--p~s~D~~~l~~~ 117 (954)
++++|||+|++||||||+|+.|++.+| +.+|++|+||+. .. .... ++++|.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 567899999999999999999999888 899999999962 21 1123 778888888888
Q ss_pred HHhhhcCCccccccchh-----hhhccccccc----cccCCCcEEEEEecccc----hhhhhcCCCEEEEEEcCHHHHHH
Q 002197 118 LQDLTEGKDTLIPMFDY-----QQKNRIGSKV----IKGASSGVVIVDGTYAL----DARLRSLLDIRVAVVGGVHFSLI 184 (954)
Q Consensus 118 L~~l~~g~~i~~p~~d~-----~~~~~~~~~~----~~~~~~~vVIvEG~~ll----~~~l~~~~D~~I~Vda~~~~rl~ 184 (954)
+..+..++.+..|.|++ ..+.+..... ....+.+++|+||++++ +..+.+.+|++|||++|.++++.
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 88888888888898854 2233222111 11134679999999997 46788999999999999999999
Q ss_pred HHHHhccCCc----cCHHHHHHhhchhhhhccCCCcCcccE------EEECC
Q 002197 185 SKVQYDIGDS----CSLDSLIDSIFPLFRKHIEPDLHHAQI------RINNR 226 (954)
Q Consensus 185 Rri~RD~~~r----~~~e~~~~~v~p~~~~~Iep~~~~ADi------II~N~ 226 (954)
|++.||...+ ......+..++|.+.+|++|.+++||+ ||+|+
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~~~~~~~vIDns 215 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTS 215 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred HHhhhhhhhcCCChHHHHHHHHHhCccHHHhhhhhhccCCEeeccCceecCC
Confidence 9999995543 344444444489999999999999999 78887
No 15
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.77 E-value=7.8e-19 Score=196.04 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=113.6
Q ss_pred ceeccccccchhhh---------ccccCCCCCcccHHHHHHHHHHHHcC-----------------------------Cc
Q 002197 544 EVVSLESYFKSEQV---------KDFKYDDFSSLDLSLLSKNISDIRNG-----------------------------RR 585 (954)
Q Consensus 544 ~vIs~Ddfy~~~~~---------~~~n~d~p~t~D~~lL~~~L~~L~~g-----------------------------~~ 585 (954)
.+|+||+||++... ...++++|++||..+|.+.+..|++| ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 36899999988432 24578999999999999999999887 57
Q ss_pred eecccccccccccCCccceeeccCccEEEEEeecccch-----hhhhcCC-----eEEEEEcChhHHHHHHHhcCccccc
Q 002197 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----EIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMG 655 (954)
Q Consensus 586 v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~-----~l~~~~D-----~~I~v~~~~d~rl~Rri~RD~~~rg 655 (954)
+.+|.||+..+++.+. ...+..+.++||+||++++++ .+++++| ++|||+++.+.+++|++.|+.. +|
T Consensus 237 v~~P~yD~~~~d~~~~-~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~-~G 314 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPD-QYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ-SG 314 (359)
T ss_dssp EEEEEEETTTTEEEEE-EEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHH-TT
T ss_pred EeeccccCccCCCCCC-ceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhc-cC
Confidence 8999999999998753 233334469999999888864 3677898 9999999999999999999874 46
Q ss_pred c--ccch--hhHHhhhcchhhhhcccccCcccEEEc
Q 002197 656 C--FMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (954)
Q Consensus 656 ~--~~~~--~q~~~~v~p~~~~~Iep~~~~ADivI~ 687 (954)
. +.+. .++.....|+. +||+|++..||+|+.
T Consensus 315 l~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 315 LVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp SCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 5 4443 35556678877 899999999999874
No 16
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.76 E-value=3.8e-18 Score=182.89 Aligned_cols=166 Identities=23% Similarity=0.442 Sum_probs=132.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCe----------EEeccccccccc------------cCCCCCcccHHHHHH
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCT----------LISMENYRVGVD------------EGNDLDSIDFDALVQ 116 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~----------VIs~Dd~y~~~~------------~~~~p~s~D~~~l~~ 116 (954)
..+|++|||+|++||||||+|+.|++.+|+. ++++|+||+.+. .++.++++|.+.+.+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHH
Confidence 4568999999999999999999999999987 899999987432 123578899999999
Q ss_pred HHHhhhcCCccccccchhhhhccccccccccCCCcEEEEEecccc-hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCC-c
Q 002197 117 NLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGD-S 194 (954)
Q Consensus 117 ~L~~l~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll-~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~-r 194 (954)
.|..+..+..+..|.|++..+.+.... ....+.++||+||++++ ++.+.+.+|.+|||+++.++++.|+..|+... .
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~~~-~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg 177 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKEET-VTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERG 177 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEEEE-EEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCeeecCccccccccCCCce-eeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhC
Confidence 999998888889999999888776332 22334579999999997 57788889999999999999999999987322 1
Q ss_pred cCHHHHHH----hhchhhhhccCCCcCcccEEEEC
Q 002197 195 CSLDSLID----SIFPLFRKHIEPDLHHAQIRINN 225 (954)
Q Consensus 195 ~~~e~~~~----~v~p~~~~~Iep~~~~ADiII~N 225 (954)
.+.+.+.+ +..+.+.++++|....||+||++
T Consensus 178 ~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~ 212 (252)
T 1uj2_A 178 RDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPR 212 (252)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEET
T ss_pred CCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEec
Confidence 34444433 34466788888999999999943
No 17
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=99.74 E-value=1.7e-18 Score=178.46 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=112.1
Q ss_pred cccccccccceeccccCCCCcccccccCCceeEeeeC--CeEEEEEcceeccCCCccccceeEEEeeh----hHHHHHHh
Q 002197 253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLD 326 (954)
Q Consensus 253 ~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~--~~~~ltyKgp~i~~~~~~~k~r~E~ev~v----~~~~~L~~ 326 (954)
+.....+.|.||+.|+++++.++.+| |||..+ +...+|+|||+.++ +.|+.| .+.++|..
T Consensus 37 ~~~~~~q~d~YfDtp~~~L~~~~~aL-----RiR~~~~~~~~~~t~Kgp~~~~---------~~e~~v~d~~~~~~~L~~ 102 (189)
T 2aca_A 37 MFENNQESDWFYDTPQRTLTQQGKSL-----VLREIQPAGIKLWIVKGPEADR---------CEATNITKLDSAQSMLEN 102 (189)
T ss_dssp EEEEEEEEEEEEECTTCHHHHTTCEE-----EEEEEETTTEEEEEEECSSTTB---------EEEEEBSCHHHHHHHHHH
T ss_pred cCcceEEEEEEEeCCCcchhhCCeEE-----EEEEecCCCcEEEEEcCCCcCc---------eEEEecCCHHHHHHHHHH
Confidence 34566799999999999999999999 999863 36899999998642 225555 89999999
Q ss_pred cCCceeEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEec-C--------hhHHHHHHHHcCCCCCc-cchhHHHHHHh
Q 002197 327 LGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT-N--------RKTVGAEALRMGINGPW-ITKSYLEMVLE 396 (954)
Q Consensus 327 LGf~~~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~-~--------~~~v~~~a~~Lgl~~~~-~~~sYlel~l~ 396 (954)
|||.++++++|.|+.|.+++++|+||+++++|. |+|||.+ + .+.+.+++++|||..+. +++||++|+++
T Consensus 103 lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~~ll~~ 181 (189)
T 2aca_A 103 MGYEVIQCSKKIRSIFFVGEFHITLDFLDGFGH-FAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEILSA 181 (189)
T ss_dssp TTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTTTSSCC
T ss_pred cCCcEEEEEEEEEEEEEECCEEEEEEcccCCee-EEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhHHHHHHh
Confidence 999999999999999999999999999999998 9999976 2 26889999999999875 89999999976
Q ss_pred hc
Q 002197 397 KK 398 (954)
Q Consensus 397 ~~ 398 (954)
..
T Consensus 182 ~~ 183 (189)
T 2aca_A 182 LE 183 (189)
T ss_dssp --
T ss_pred hh
Confidence 54
No 18
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.74 E-value=9.8e-18 Score=173.89 Aligned_cols=175 Identities=26% Similarity=0.430 Sum_probs=145.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC--Cceeccccccchh------hhccccCCCCCcccHHHHHHHHHHHHcCCce
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKSE------QVKDFKYDDFSSLDLSLLSKNISDIRNGRRT 586 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg--~~vIs~Ddfy~~~------~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v 586 (954)
.++.+|||+||+|||||||++.|+..++ +.++++|.||... +.....++.|+.+|.+.+.+.+..+..++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPV 83 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCc
Confidence 4578999999999999999999999988 9999999998741 1223446778899999999999999989899
Q ss_pred ecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch--hhH
Q 002197 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDI 663 (954)
Q Consensus 587 ~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~--~q~ 663 (954)
..|.++.+.+.+... .......+++|+||.+++. +.+...+|.+||++++.+.++.|++.|+...+|.+... +++
T Consensus 84 ~~~~~~~s~g~~~~~--~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 84 EMPVYDFRAYTRSPR--RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCEETTTTEECSS--CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCCcccCcccCCCCC--eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999998876531 2223456899999999986 66788899999999999999999999987667766543 456
Q ss_pred HhhhcchhhhhcccccCcccEEEcCCCC
Q 002197 664 MMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (954)
Q Consensus 664 ~~~v~p~~~~~Iep~~~~ADivI~n~~~ 691 (954)
...+.|.|..|++|.+..||+||+|+-+
T Consensus 162 ~~~~~~~~~~~~~~~~~~aD~ii~~~~~ 189 (211)
T 3asz_A 162 LEQVKPMHLHFVEPTKRYADVIVPRGGQ 189 (211)
T ss_dssp HHTHHHHHHHTTGGGGGGCSEEEESTTS
T ss_pred HHhhhhhHHHhcccchhcCeEEEeCCCc
Confidence 6778899999999999999999998754
No 19
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.73 E-value=1.5e-17 Score=173.03 Aligned_cols=171 Identities=19% Similarity=0.232 Sum_probs=135.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccchhhhc----cc-cCCCCCcccHHHHHHHHHHHHcC
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVK----DF-KYDDFSSLDLSLLSKNISDIRNG 583 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~~~~~~----~~-n~d~p~t~D~~lL~~~L~~L~~g 583 (954)
.++..+|||.||+|||||||++.|+..+. +.+|++|+|+...... .. ..+.|.++|...+.+.+..+..|
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 98 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ 98 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence 35678999999999999999999998875 6789999998763221 11 24678899999999999999999
Q ss_pred CceecccccccccccCCccceeeccC-ccEEEEEeecccc-----hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccc
Q 002197 584 RRTKVPIFDLETGARSGFKELEVSED-CGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657 (954)
Q Consensus 584 ~~v~~P~yD~~~~dr~~~~~~~~~~~-~dVVIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~ 657 (954)
+.+..|.||+..+.+.+. ...... .+++|+||++++. ..+.+.+|.+||++++.+.++.|++.|+. .+|.+
T Consensus 99 ~~i~~p~~d~~~~~~~g~--~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~-~~g~t 175 (208)
T 3c8u_A 99 ERVIYPLFDRARDIAIAG--AAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWL-DHGLN 175 (208)
T ss_dssp SCEEEEEEETTTTEEEEE--EEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHH-HTTCC
T ss_pred CceecccCCccccCCCCC--ceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHH-hcCCC
Confidence 999999999998876542 222233 3899999999854 24578899999999999999999999963 45666
Q ss_pred cch--hhHHhhhcchhhhhcccccCcccEEEcC
Q 002197 658 MSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (954)
Q Consensus 658 ~~~--~q~~~~v~p~~~~~Iep~~~~ADivI~n 688 (954)
.+. ..+.....|.+ .|++|.+..||+||+.
T Consensus 176 ~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 176 HDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 554 33433577766 7999999999999964
No 20
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.72 E-value=5.2e-18 Score=177.22 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=123.6
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC-----------------CCCcccHHHHHHHHHhh
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL 121 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~-----------------~p~s~D~~~l~~~L~~l 121 (954)
...|+-|||||++||||||+++.|++ +|+++|++|.+.+.+...+ .-+.+|+..|.+.++.-
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d 84 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD 84 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence 45689999999999999999999988 9999999999765432211 23578999988877653
Q ss_pred h----cCCccccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccC
Q 002197 122 T----EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS 196 (954)
Q Consensus 122 ~----~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~ 196 (954)
. ..+.+.+|............ ...+++|+|.+++++ .++...||.+|+|++|+++++.|.+.|+......
T Consensus 85 ~~~~~~L~~i~HP~I~~~~~~~~~~-----~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~ee 159 (210)
T 4i1u_A 85 EDARRRLEAITHPLIRAETEREARD-----AQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQ 159 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----CCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcCCCCHHH
Confidence 2 22346677666555444332 234689999999999 9999999999999999999999999999766566
Q ss_pred HHHHHHhhchhhhhccCCCcCcccEEEECC
Q 002197 197 LDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 197 ~e~~~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
....++.++|..++ .+.||+||+|+
T Consensus 160 a~~ri~~Q~~~eek-----~~~AD~VIdN~ 184 (210)
T 4i1u_A 160 VEAIIARQATREAR-----LAAADDVIVND 184 (210)
T ss_dssp HHHHHHHSCCHHHH-----HHTCSEEEECS
T ss_pred HHHHHHHcCChHHH-----HHhCCEEEECC
Confidence 66667778887766 68999999998
No 21
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.72 E-value=9.9e-18 Score=173.56 Aligned_cols=164 Identities=18% Similarity=0.319 Sum_probs=112.9
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh---CC--eEEeccccccccc---cCCC-------CCcccHHHHHHHH-Hhhh
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GC--TLISMENYRVGVD---EGND-------LDSIDFDALVQNL-QDLT 122 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~L---g~--~VIs~Dd~y~~~~---~~~~-------p~s~D~~~l~~~L-~~l~ 122 (954)
..++.+|||+|++||||||+++.|+..+ |. .++++|.+++... ..+. ++++|.+.+.+.+ .++.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 4567999999999999999999999876 43 4567799876432 1111 2568888888775 5566
Q ss_pred cCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002197 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (954)
Q Consensus 123 ~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~ 202 (954)
.+..+.+|.|++..+.... ......+.++||+||++++++.+.+.+|.+|||++|.++++.|++.|+ ......+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~---~~~~~~~~~ 174 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV---KQNIQKFIN 174 (201)
T ss_dssp TCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC-----------------CHHHHHH
T ss_pred cCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC---HHHHHHHHh
Confidence 6777888999987543322 222334567999999999998888999999999999999999999998 233444557
Q ss_pred hhchhhhhccCCC--cCcccEEEECC
Q 002197 203 SIFPLFRKHIEPD--LHHAQIRINNR 226 (954)
Q Consensus 203 ~v~p~~~~~Iep~--~~~ADiII~N~ 226 (954)
+++|.++.|+++. +++||+||+|+
T Consensus 175 ~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 175 RYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred heeHHHHHHhCCCCcHhhCcEEecCC
Confidence 7889888887666 78999999987
No 22
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.71 E-value=8.2e-17 Score=178.39 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=153.6
Q ss_pred cccccCCcccchhh---hHHHHHHHHHHHH--------------------hcCCCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 30 SILQSLPVHASFDH---GYYLLVKSIQELR--------------------EKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 30 ~~~~~~~~~~s~d~---~~~~lv~~i~~~~--------------------~~~~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
..+.++++.+++++ .|.++.+.+.... ....+..+|||.|++|||||||++.|+..+
T Consensus 35 ~~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 35 VGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp HTTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhccCCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 44677888888665 7888877765431 114567999999999999999999999877
Q ss_pred C-------CeEEeccccccccc---------cCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCC
Q 002197 87 G-------CTLISMENYRVGVD---------EGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGAS 149 (954)
Q Consensus 87 g-------~~VIs~Dd~y~~~~---------~~~~p~s~D~~~l~~~L~~l~~g~~-i~~p~~d~~~~~~~~~~~~~~~~ 149 (954)
. +.++++|.|+.+.. ..+.+.++|.+.+.+.|..+..+.. ...|.|++...+++........+
T Consensus 115 ~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~ 194 (312)
T 3aez_A 115 ARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRH 194 (312)
T ss_dssp HTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECS
T ss_pred cccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccC
Confidence 3 56899999865311 1355778888888888888875544 77899999999887655444566
Q ss_pred CcEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHHHHHHhccC-----C-----------ccCHHHHHH-------
Q 002197 150 SGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKVQYDIG-----D-----------SCSLDSLID------- 202 (954)
Q Consensus 150 ~~vVIvEG~~ll~----~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~-----~-----------r~~~e~~~~------- 202 (954)
.+++|+||++++. ..+.+.+|.+|||+++.+.+..|++.|... . ..+.+++.+
T Consensus 195 p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~ 274 (312)
T 3aez_A 195 PDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWR 274 (312)
T ss_dssp CSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHH
T ss_pred CCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHHH
Confidence 7899999999997 578899999999999999999999888431 1 123333321
Q ss_pred -hhchhhhhccCCCcCcccEEEECCCCC
Q 002197 203 -SIFPLFRKHIEPDLHHAQIRINNRFVS 229 (954)
Q Consensus 203 -~v~p~~~~~Iep~~~~ADiII~N~~~~ 229 (954)
...|++.+||+|++.+||+||+|+-.+
T Consensus 275 ~~~~p~~~~~i~p~~~~ADlii~~~~~~ 302 (312)
T 3aez_A 275 TINRPNLVENILPTRPRATLVLRKDADH 302 (312)
T ss_dssp HTHHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred hccHHHHHHhccCCCCCCeEEEecCCCC
Confidence 236889999999999999999988543
No 23
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.70 E-value=1.7e-17 Score=171.83 Aligned_cols=168 Identities=17% Similarity=0.261 Sum_probs=115.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccccchhhh-ccccCC-----CCCcccHHHHHHHH-HHHH
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQV-KDFKYD-----DFSSLDLSLLSKNI-SDIR 581 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy~~~~~-~~~n~d-----~p~t~D~~lL~~~L-~~L~ 581 (954)
...+.+|||+|++||||||+++.|+..+ + +.++++|.++++... ...+.. .++++|.+.|.+.+ ..+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 3567899999999999999999999876 4 446688999986321 111111 14789999998765 7788
Q ss_pred cCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccchh
Q 002197 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN 661 (954)
Q Consensus 582 ~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~ 661 (954)
.++.+.+|.|++..+.+.. ......+.++||+||++++.+.+.+.+|.+|||++|.++++.|++.|+ . ....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~-----~-~~~~ 170 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSK--RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV-----K-QNIQ 170 (201)
T ss_dssp TCSEEEEEEEETTTTEEEE--EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC--------------------CHH
T ss_pred cCCccccCceeccCCCCCC--ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC-----H-HHHH
Confidence 8889999999998544321 122234578999999999988888999999999999999999999997 1 1113
Q ss_pred hHHhhhcchhhhhcccc--cCcccEEEcCC
Q 002197 662 DIMMTVFPMFQQHIEPH--LVHAHLKIRND 689 (954)
Q Consensus 662 q~~~~v~p~~~~~Iep~--~~~ADivI~n~ 689 (954)
.+...+.|.+..|+++. +..||+||+|+
T Consensus 171 ~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 171 KFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 34466788899998766 68899999985
No 24
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.70 E-value=8.6e-17 Score=167.26 Aligned_cols=166 Identities=19% Similarity=0.312 Sum_probs=131.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecccccccc---------ccCCCCCcccHHHHHHHHHhhhcC
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEG 124 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~~---------~~~~~p~s~D~~~l~~~L~~l~~g 124 (954)
.++..+|||.|++|||||||++.|+..+. +.+|++|+++... ...+.+..++...+.+.+..+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 98 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ 98 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence 45678999999999999999999999885 6789999986531 123557788988888889998888
Q ss_pred CccccccchhhhhccccccccccCCCcEEEEEecccch-----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHH
Q 002197 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (954)
Q Consensus 125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-----~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~ 199 (954)
+.+..|.+++..+...+.........+++|+||.+++. ..+.+.+|.+|||+++.+.++.|.+.|+.....+.+.
T Consensus 99 ~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~t~~~ 178 (208)
T 3c8u_A 99 ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDA 178 (208)
T ss_dssp SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCCCHHH
Confidence 88999999998887665543333334799999999854 2457899999999999999999999997543445544
Q ss_pred HHH----hhchhhhhccCCCcCcccEEEEC
Q 002197 200 LID----SIFPLFRKHIEPDLHHAQIRINN 225 (954)
Q Consensus 200 ~~~----~v~p~~~~~Iep~~~~ADiII~N 225 (954)
+.+ .+.|.+ +|++|.+.+||+||++
T Consensus 179 ~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 179 AVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 433 356766 7899999999999965
No 25
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.69 E-value=1e-16 Score=175.77 Aligned_cols=187 Identities=16% Similarity=0.190 Sum_probs=134.7
Q ss_pred hhhhHHHHHHHHHHHHh-cCCCcEEEEEECCCCCcHHHHHHHHHHHhC-------CeEE-ecccccccc-----------
Q 002197 41 FDHGYYLLVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLI-SMENYRVGV----------- 100 (954)
Q Consensus 41 ~d~~~~~lv~~i~~~~~-~~~~~~IIgItG~sGSGKSTlA~~La~~Lg-------~~VI-s~Dd~y~~~----------- 100 (954)
+++.+..|++++..+.. ..+++.+|||+|++||||||+|+.|+..++ +.++ ++|+||...
T Consensus 9 ~~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~ 88 (290)
T 1odf_A 9 LDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFK 88 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhcccc
Confidence 66677778888877543 456789999999999999999999998875 4455 999997742
Q ss_pred -----ccCCCCCcccHHHHHHHHHhhhcC------Cccccccchhhh----hcccccc-ccccCCCcEEEEEecccch-h
Q 002197 101 -----DEGNDLDSIDFDALVQNLQDLTEG------KDTLIPMFDYQQ----KNRIGSK-VIKGASSGVVIVDGTYALD-A 163 (954)
Q Consensus 101 -----~~~~~p~s~D~~~l~~~L~~l~~g------~~i~~p~~d~~~----~~~~~~~-~~~~~~~~vVIvEG~~ll~-~ 163 (954)
..++.|+++|.+.+.+.|..+..| ..+..|.|++.. +++.... .... +.+++|+||++++. +
T Consensus 89 ~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~ 167 (290)
T 1odf_A 89 NNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNP 167 (290)
T ss_dssp TCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCC
T ss_pred ccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCc
Confidence 113468999999999999999887 568899999988 7765431 2223 67899999998743 3
Q ss_pred h---------------------------hhcCCC---EEEEEEcCHHHHHHH-HHHh--cc-------CCccCHHHHHHh
Q 002197 164 R---------------------------LRSLLD---IRVAVVGGVHFSLIS-KVQY--DI-------GDSCSLDSLIDS 203 (954)
Q Consensus 164 ~---------------------------l~~~~D---~~I~Vda~~~~rl~R-ri~R--D~-------~~r~~~e~~~~~ 203 (954)
. +++.+| +.|||+++...++.| |+.| +. .....+.++.++
T Consensus 168 ~~~~~~~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~ 247 (290)
T 1odf_A 168 ILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDR 247 (290)
T ss_dssp CCSCTTTCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHT
T ss_pred cchhhhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 2 333445 449999976666665 7777 41 111334556677
Q ss_pred hchhhhhccCC-------CcCcccEEEECCCCC
Q 002197 204 IFPLFRKHIEP-------DLHHAQIRINNRFVS 229 (954)
Q Consensus 204 v~p~~~~~Iep-------~~~~ADiII~N~~~~ 229 (954)
++|.|+.|++| .+ +||+|+..+-+.
T Consensus 248 ~~p~y~~~~~~~~~~~~~~~-~adlvl~~~~~~ 279 (290)
T 1odf_A 248 YMPSYKLYLNDFVRSESLGS-IATLTLGIDSNR 279 (290)
T ss_dssp THHHHHHHHHHHHHHTCSSS-SEEEEEEECTTS
T ss_pred hcchHHHHhHHHHHhccCCC-CCCEEEEECCCC
Confidence 78877766644 44 899999777544
No 26
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.68 E-value=6e-17 Score=180.85 Aligned_cols=137 Identities=12% Similarity=0.168 Sum_probs=110.3
Q ss_pred eEEeccccccc-------------cccCCCCCcccHHHHHHHHHhhhcC-----------------------------Cc
Q 002197 89 TLISMENYRVG-------------VDEGNDLDSIDFDALVQNLQDLTEG-----------------------------KD 126 (954)
Q Consensus 89 ~VIs~Dd~y~~-------------~~~~~~p~s~D~~~l~~~L~~l~~g-----------------------------~~ 126 (954)
.+|++|+||.. ...++.|+++|.+.+.+.+..++.+ ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 37899999863 1245789999999999998888766 56
Q ss_pred cccccchhhhhccccccccccCCCcEEEEEecccchh-----hhhcCCC-----EEEEEEcCHHHHHHHHHHhccCCcc-
Q 002197 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA-----RLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSC- 195 (954)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~-----~l~~~~D-----~~I~Vda~~~~rl~Rri~RD~~~r~- 195 (954)
+..|.||+..+++........+..++||+||++++.+ .+++++| ++|||+++.++++.|++.|+...+.
T Consensus 237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~ 316 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLV 316 (359)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSC
T ss_pred EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCC
Confidence 8899999999999887666666678999999777753 4567899 9999999999999999999854444
Q ss_pred -CHHHHHHh----hchhhhhccCCCcCcccEEEECC
Q 002197 196 -SLDSLIDS----IFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 196 -~~e~~~~~----v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
+.+++.++ ..|+. ++|+|++.+||+|+...
T Consensus 317 ~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~~~ 351 (359)
T 2ga8_A 317 TTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVHIR 351 (359)
T ss_dssp SSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEEEE
T ss_pred CCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEEec
Confidence 56655544 47766 79999999999998543
No 27
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.67 E-value=4.3e-16 Score=166.13 Aligned_cols=173 Identities=27% Similarity=0.457 Sum_probs=137.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc----------eeccccccch---hh-----hccccCCCCCcccHHHHHHH
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKS---EQ-----VKDFKYDDFSSLDLSLLSKN 576 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~----------vIs~Ddfy~~---~~-----~~~~n~d~p~t~D~~lL~~~ 576 (954)
.++.+|||+||+|||||||++.|+..+|.. ++++|+||.. .+ ...+++++|.++|.+.+.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT 102 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence 467899999999999999999999988854 7899998864 11 12235667888999999999
Q ss_pred HHHHHcCCceecccccccccccCCccceeeccCccEEEEEeeccc-chhhhhcCCeEEEEEcChhHHHHHHHhcCccccc
Q 002197 577 ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (954)
Q Consensus 577 L~~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg 655 (954)
|..+..+.....+.|+...+.|... .....+.+++|+||+.++ .+.+.+.+|.+|+++++.+.++.|++.|+. .+|
T Consensus 103 L~~l~~~~~~~~~~ls~g~~~r~~~--~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~-~~G 179 (245)
T 2jeo_A 103 LKNIVEGKTVEVPTYDFVTHSRLPE--TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRG 179 (245)
T ss_dssp HHHHHTTCCEEECCEETTTTEECSS--CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHT-C--
T ss_pred HHHHHCCCCeecccccccccCccCc--eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHH-HcC
Confidence 9988888888888888888777643 233345689999999987 477888899999999999999999999987 667
Q ss_pred cccch--hhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 656 CFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 656 ~~~~~--~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
.+.+. .++....++.++.|++|.+..||+||++..
T Consensus 180 ~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~ 216 (245)
T 2jeo_A 180 RDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGV 216 (245)
T ss_dssp -CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESST
T ss_pred CCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCC
Confidence 66554 355556788999999999999999996643
No 28
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.66 E-value=8.1e-16 Score=159.41 Aligned_cols=168 Identities=25% Similarity=0.432 Sum_probs=132.2
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC--CeEEeccccccccc----------cCCCCCcccHHHHHHHHHhhhcCCc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKD 126 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg--~~VIs~Dd~y~~~~----------~~~~p~s~D~~~l~~~L~~l~~g~~ 126 (954)
..++.+|||+|++||||||+++.|+..++ +.+++.|.+++... ..+.+..++.+.+.+.+..+..++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLP 82 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCC
Confidence 34568999999999999999999999989 99999999876321 1234567788888888888777777
Q ss_pred cccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCC-ccCHH----HH
Q 002197 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLD----SL 200 (954)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~-r~~~e----~~ 200 (954)
+.+|.++...+.+.... ......+++++||.+++. +.+..++|.+||||++.+.++.|++.|+... +.+.. .+
T Consensus 83 ~~~~~~~~s~g~~~~~~-~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 83 VEMPVYDFRAYTRSPRR-TPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCEETTTTEECSSC-EEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCCCcccCcccCCCCCe-EEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88898888877654321 122345799999999997 6788899999999999999999999987432 23333 33
Q ss_pred HHhhchhhhhccCCCcCcccEEEECCC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
..+..+.+.+|++|.+.+||+||+|+-
T Consensus 162 ~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 162 LEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred HHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 455678999999999999999999984
No 29
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.62 E-value=5.2e-16 Score=160.22 Aligned_cols=145 Identities=17% Similarity=0.245 Sum_probs=107.4
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccccc---------CC----CCCcccHHHHHHHHHhh----
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---------GN----DLDSIDFDALVQNLQDL---- 121 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~---------~~----~p~s~D~~~l~~~L~~l---- 121 (954)
....++|||+|++||||||+|+.|++.+|+++|++|++++.... .+ ..+.+|...+.+.++.-
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~ 88 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENL 88 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHH
Confidence 34568999999999999999999999889999999999764321 11 15678888887755431
Q ss_pred hcCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHH
Q 002197 122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI 201 (954)
Q Consensus 122 ~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~ 201 (954)
...+.+.+|.+........... ..++|+|++++++.++...+|.+|||++|+++++.|.+
T Consensus 89 ~~l~~i~hP~i~~~~~~~~~~~------~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli-------------- 148 (192)
T 2grj_A 89 KKLELLVHPLMKKRVQEIINKT------SGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNR-------------- 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------CEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCS--------------
T ss_pred HHHHhhhCHHHHHHHHHHHHHc------CCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHH--------------
Confidence 2223456676665554432221 36899999999998888999999999999999998871
Q ss_pred HhhchhhhhccCCCcCcccEEEECC
Q 002197 202 DSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 202 ~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
+.++|. ++++.++.||+||+|+
T Consensus 149 ~~q~~~---~~~~~~~~AD~vI~n~ 170 (192)
T 2grj_A 149 EADRRL---KFQEDIVPQGIVVANN 170 (192)
T ss_dssp SHHHHH---TTCTTCCCCSEEEECS
T ss_pred HhcCCc---hhhhHHhcCCEEEECC
Confidence 223344 3455689999999998
No 30
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.60 E-value=8.7e-15 Score=156.03 Aligned_cols=167 Identities=20% Similarity=0.390 Sum_probs=127.7
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCe----------EEeccccccccc------------cCCCCCcccHHHHHH
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCT----------LISMENYRVGVD------------EGNDLDSIDFDALVQ 116 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~----------VIs~Dd~y~~~~------------~~~~p~s~D~~~l~~ 116 (954)
-.++.+|||+||+||||||+++.|+..+|.. ++++|.||+.+. ..+.+..++.+.+.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHR 101 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHH
Confidence 3456899999999999999999999988854 799998876422 112345677777888
Q ss_pred HHHhhhcCCccccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCcc
Q 002197 117 NLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC 195 (954)
Q Consensus 117 ~L~~l~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~ 195 (954)
.|..+..+.....+.++.....++... ....+.+++|+||+.++. ..+.+++|.+|+|+++.+.++.|++.|+...+.
T Consensus 102 ~L~~l~~~~~~~~~~ls~g~~~r~~~~-~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~~~G~ 180 (245)
T 2jeo_A 102 TLKNIVEGKTVEVPTYDFVTHSRLPET-TVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGR 180 (245)
T ss_dssp HHHHHHTTCCEEECCEETTTTEECSSC-EEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHTC---
T ss_pred HHHHHHCCCCeecccccccccCccCce-EEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence 887776666667777887777766442 223446799999999874 778888999999999999999999999863335
Q ss_pred CHHHHHHh----hchhhhhccCCCcCcccEEEECC
Q 002197 196 SLDSLIDS----IFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 196 ~~e~~~~~----v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
+.+++.++ ..+.+.++++|.++.||+||++.
T Consensus 181 ~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~ 215 (245)
T 2jeo_A 181 DLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG 215 (245)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred CHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence 66666544 45788899999999999999664
No 31
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=99.59 E-value=2.7e-15 Score=153.11 Aligned_cols=125 Identities=23% Similarity=0.377 Sum_probs=110.5
Q ss_pred cccccccCCCCCCCCCcCCcceEEEE--eeCCEEEEEeeccccccCcccccceeEEe--hhhHHHHHHHhCceeeeeeee
Q 002197 730 FIDMYLRLPGIPTNGQLTESDCIRVR--ICEGRFALLIREPLREGNFIIQPKVDFDI--SISTVAGLLNLGYQAVAYIEA 805 (954)
Q Consensus 730 y~~~Y~~~~~l~~~~~~~~~~~irir--~~~~~~~l~~~~~~~d~~~~~~~~~~~~v--~~~~~~~l~~lg~~~~~~~~~ 805 (954)
..|.||..| ++ .||||| ..++++.||||+|. |+.++++.+++++| ...+..+|.+|||.++..++|
T Consensus 39 Q~d~Yfd~p----~~-----~~LRIR~~~~~~~~~lT~K~p~-~g~~k~~~E~e~~v~d~~~~~~iL~~LG~~~~~~i~K 108 (179)
T 1yem_A 39 QEDVYFEVP----RP-----KLLRIRGVHNLKKYYLTFKEIL-DENNEEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKK 108 (179)
T ss_dssp EEEEEECCC----TT-----EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEEcCC----CC-----CEEEEEEEcCCCeEEEEEeccC-CCCccceeEEEEEeCCHHHHHHHHHHCCCcEEEEEEE
Confidence 679999877 21 799999 55899999999999 99999999999999 557888999999999999999
Q ss_pred eeEEeecCcEEEEEecccCCCCceEEEeccc------HHHHHHHHhhcCCCCC-ccchhHHHHHHhh
Q 002197 806 SAFIYQDGKILIEVDHLQDAPSPYLQIKGVD------KEAVAAAGSTLKLDGS-YTTKSYLQIILEK 865 (954)
Q Consensus 806 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~v~~~~~~l~~~~~-~~~~syle~~~~~ 865 (954)
.|..|..+++.|++|+++++| .|+||-... +..+.+++++|||+.. .+++||+||++++
T Consensus 109 ~R~~~~~~~~~i~lD~~~~lG-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~eLl~~~ 174 (179)
T 1yem_A 109 KRWVYKLNGVTLEVNRVEGIG-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELINEL 174 (179)
T ss_dssp EEEEEEETTEEEEEEEETTTE-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC---
T ss_pred EEEEEEECCEEEEEEecCCCC-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHHHHHhh
Confidence 999999999999999999999 999996443 8899999999999766 8999999998865
No 32
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=99.56 E-value=6.4e-15 Score=150.39 Aligned_cols=125 Identities=25% Similarity=0.279 Sum_probs=108.5
Q ss_pred hhcccccccCCCCCCCCCcCCcc-eEEEEeeC--CEEEEEeeccccccCcccccceeEEe--hhhHHHHHHHhCceeeee
Q 002197 728 QNFIDMYLRLPGIPTNGQLTESD-CIRVRICE--GRFALLIREPLREGNFIIQPKVDFDI--SISTVAGLLNLGYQAVAY 802 (954)
Q Consensus 728 ~~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~--~~~~l~~~~~~~d~~~~~~~~~~~~v--~~~~~~~l~~lg~~~~~~ 802 (954)
....|+||..| ++.++.++ |||||..+ |++.+|||+|+.+.. .+++| ...+..+|.+|||++++.
T Consensus 39 ~~q~d~yfd~p----~~~l~~~~~~lRiR~~~~~~~~~~t~Kgp~~~~~------~e~~v~d~~~~~~iL~~LG~~~~~~ 108 (179)
T 3ghx_A 39 NHEKDIYLDAN----GQDLAKQQISMVLREMNPSGIRLWIVKGPGAERC------EASNIEDVSKVQSMLATLGYHPAFT 108 (179)
T ss_dssp EEEEEEEEECT----TCTTGGGTCEEEEEEEETTCCEEEEEECSSSSBE------EEEECSCHHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEEEeCC----CccHHHCCcEEEEEEecCCCcEEEEEecCCCCcE------EEEEcCCHHHHHHHHHHCCCcEEEE
Confidence 35679999888 67776665 99999974 789999999998863 46777 568889999999999999
Q ss_pred eeeeeEEeecCcEEEEEecccCCCCceEEEec---------ccHHHHHHHHhhcCCCC-CccchhHHHHHH
Q 002197 803 IEASAFIYQDGKILIEVDHLQDAPSPYLQIKG---------VDKEAVAAAGSTLKLDG-SYTTKSYLQIIL 863 (954)
Q Consensus 803 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~v~~~~~~l~~~~-~~~~~syle~~~ 863 (954)
++|.|.+|..+++.|++|++++|| .|+||-. ..++.+.+++++|||+. ..+++||+||++
T Consensus 109 v~K~R~~y~~~~~~i~LD~v~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY~eLl~ 178 (179)
T 3ghx_A 109 IEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLLG 178 (179)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHHT
T ss_pred EEEEEEEEEECCEEEEEEccCCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehhHHHHhh
Confidence 999999999999999999999999 9999932 46789999999999965 688999999875
No 33
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=99.56 E-value=1e-14 Score=149.37 Aligned_cols=133 Identities=19% Similarity=0.314 Sum_probs=116.9
Q ss_pred hcccccccCCCCCCCCCcCCcc-eEEEE----eeCCEEEEEeeccccccCcccccceeEEeh---hhHHHHHHHhCceee
Q 002197 729 NFIDMYLRLPGIPTNGQLTESD-CIRVR----ICEGRFALLIREPLREGNFIIQPKVDFDIS---ISTVAGLLNLGYQAV 800 (954)
Q Consensus 729 ~y~~~Y~~~~~l~~~~~~~~~~-~irir----~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~---~~~~~~l~~lg~~~~ 800 (954)
...|+||..| +++++.++ ||||| ..++++.+|||+|..++...+|+++|++|. ..+..+|.+|||+++
T Consensus 29 ~q~d~YfDtp----~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~E~e~~v~~~~~~~~~~L~~lgl~~~ 104 (183)
T 2een_A 29 IHEDIYYQHP----CRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRLEIEVEIQEDVDKYFELLDRLGFKEV 104 (183)
T ss_dssp EEEEEEEECS----SSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEEEEEEEECSCHHHHHHHHHHTTCEEE
T ss_pred EEEEeEEcCC----CccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEEEEEEeecCCHHHHHHHHHHCCCeEE
Confidence 4679999888 67776665 99999 567899999999999999999999999996 357788888999999
Q ss_pred eeeeeeeEEeecC-cEEEEEecccCCCCceEEEecc---------cHHHHHHHHhhcCCCCCccchhHHHHHHhhcc
Q 002197 801 AYIEASAFIYQDG-KILIEVDHLQDAPSPYLQIKGV---------DKEAVAAAGSTLKLDGSYTTKSYLQIILEKLP 867 (954)
Q Consensus 801 ~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~l~~~~~~~~~syle~~~~~~~ 867 (954)
..+++.|.+|..+ ++.|.+|+++++| .|+||-.. .+..+.+++++||| +..+++||+||++++..
T Consensus 105 ~~~~k~R~~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY~ell~~~~~ 179 (183)
T 2een_A 105 LKVVKTREKYYVEKGVTITLDEVEGLG-KFIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSYLELLLEKRT 179 (183)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCHHHHHHHTC-
T ss_pred EEEEEEEEEEEeCCCEEEEEEeecCCe-eEEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccHHHHHHhhhh
Confidence 9999999999999 9999999999999 89888321 47789999999999 99999999999998744
No 34
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.52 E-value=1e-14 Score=150.63 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=111.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh----------hccccCCCCCcccHHHHHHHH----HH
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----------VKDFKYDDFSSLDLSLLSKNI----SD 579 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~----------~~~~n~d~p~t~D~~lL~~~L----~~ 579 (954)
.....+|||+|++||||||+|+.|++.+|+.++++|++++... .+...++ ++.+|.+.|.+.+ ..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHH
Confidence 3456899999999999999999999989999999999987621 1222344 7889998888743 23
Q ss_pred HHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccc
Q 002197 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (954)
Q Consensus 580 L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~ 659 (954)
++..+.+.+|.++.....+.. ....++|+||.+++...+.+.+|..|||++|.++++.|.+.
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~-------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli~----------- 149 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIIN-------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNRE----------- 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCSS-----------
T ss_pred HHHHHhhhCHHHHHHHHHHHH-------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHHH-----------
Confidence 344456778887766544331 11469999999998878888999999999999999999811
Q ss_pred hhhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 660 ~~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
.|+ |. |+++.+..||++|+|+.
T Consensus 150 -~q~-----~~---~~~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 150 -ADR-----RL---KFQEDIVPQGIVVANNS 171 (192)
T ss_dssp -HHH-----HH---TTCTTCCCCSEEEECSS
T ss_pred -hcC-----Cc---hhhhHHhcCCEEEECCC
Confidence 122 11 34566788999999884
No 35
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.51 E-value=1.9e-14 Score=156.93 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=105.9
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCC-----------------CCCcccHHHHHHHHHhh
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL 121 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~-----------------~p~s~D~~~l~~~L~~l 121 (954)
.++|++|+|+|++||||||+|+.|+ .+|+.+|++|++++.....+ ..+.+|...+...++..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3568999999999999999999999 58999999999854321111 11345665554333221
Q ss_pred ----hcCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCH
Q 002197 122 ----TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSL 197 (954)
Q Consensus 122 ----~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~ 197 (954)
...+.+.+|.+........... .....++||+||+++++..+...+|.+|||++|+++++.|+..|+.......
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~--~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~ 228 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVA--VAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAA 228 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHH--hccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcCCCCHHHH
Confidence 1112345565554444333211 1223468999999998877888899999999999999999999974322222
Q ss_pred HHHHHhhchhhhhccCCCcCcccEEEECCC
Q 002197 198 DSLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 198 e~~~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
...++.+++.... ...||+||+|+.
T Consensus 229 ~~ri~~q~~~~~~-----~~~AD~vIdn~~ 253 (281)
T 2f6r_A 229 QSRLQSQMSGQQL-----VEQSNVVLSTLW 253 (281)
T ss_dssp HHHHHTSCCHHHH-----HHTCSEEEECSS
T ss_pred HHHHHHcCChHhh-----HhhCCEEEECCC
Confidence 2333333443333 256999999984
No 36
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.46 E-value=5.6e-14 Score=145.14 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=94.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCC-----------------CCcccHHHHHHHHHhhh--
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQDLT-- 122 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~-----------------p~s~D~~~l~~~L~~l~-- 122 (954)
|++|||+|++||||||+++.|++ +|+.++++|++++.....+. .+..+...+...+..-.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 47899999999999999999988 89999999998765322111 11233333332222100
Q ss_pred --cCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002197 123 --EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (954)
Q Consensus 123 --~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~ 200 (954)
....+.+|.+......... ......+|++|+++++..+...||.+|||++|+++++.|...|+..........
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~-----~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~~r 155 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLA-----EQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRI 155 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----TCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC-----CHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHH-----hcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 0011223433332222111 112348899999988866788999999999999999999998874322223333
Q ss_pred HHhhchhhhhccCCCcCcccEEEECCC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
++.+.+.... .+.||++|+|+.
T Consensus 156 ~~~q~~~~~~-----~~~ad~vIdn~~ 177 (206)
T 1jjv_A 156 MNSQVSQQER-----LKWADDVINNDA 177 (206)
T ss_dssp HHHSCCHHHH-----HHHCSEEEECCS
T ss_pred HHhcCChHHH-----HHhCCEEEECCC
Confidence 3333344333 457999999984
No 37
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=99.44 E-value=3.2e-13 Score=135.81 Aligned_cols=125 Identities=20% Similarity=0.369 Sum_probs=109.0
Q ss_pred hcccccccCCCCCCCCCcCCcceEEEEe--eCCEEEEEeeccccccCcccccceeEEe--hhhHHHHHHHhCceeeeeee
Q 002197 729 NFIDMYLRLPGIPTNGQLTESDCIRVRI--CEGRFALLIREPLREGNFIIQPKVDFDI--SISTVAGLLNLGYQAVAYIE 804 (954)
Q Consensus 729 ~y~~~Y~~~~~l~~~~~~~~~~~irir~--~~~~~~l~~~~~~~d~~~~~~~~~~~~v--~~~~~~~l~~lg~~~~~~~~ 804 (954)
...|.||..| ++ .+||||. .++++.||||+|. ++...+|++.+++| ...+...|.+|||.++..++
T Consensus 30 ~q~d~Yfdt~----~~-----~~LRiR~~~~~~~~~lT~K~~~-~g~~~~~~E~e~~i~~~~~~~~~L~~lg~~~~~~~~ 99 (165)
T 2dc4_A 30 EQEDVYFELP----SP-----KLLRVRKINNTGKSYITYKEIL-DKRNEEFYELEFEVQDPEGAIELFKRLGFKVQGVVK 99 (165)
T ss_dssp EEEEEEECCS----TT-----EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEBSCHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEEcCC----CC-----CEEEEEEEcCCCEEEEEEeCcC-CCCceeeeEEEEEcCCHHHHHHHHHHcCCcEEEEEE
Confidence 3567888766 21 7999995 5899999999999 99999999999999 45677788899999999999
Q ss_pred eeeEEeecCcEEEEEecccCCCCceEEEecc------cHHHHHHHHhhcCCCCC-ccchhHHHHHHh
Q 002197 805 ASAFIYQDGKILIEVDHLQDAPSPYLQIKGV------DKEAVAAAGSTLKLDGS-YTTKSYLQIILE 864 (954)
Q Consensus 805 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~v~~~~~~l~~~~~-~~~~syle~~~~ 864 (954)
+.|..|..+++++.+|.++++| .|+||--. .+..+.+++++|||+.. .+++||+||++|
T Consensus 100 k~R~~~~~~~~~i~lD~~~~~g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell~~ 165 (165)
T 2dc4_A 100 KRRWIYKLNNVTFELNRVEKAG-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELING 165 (165)
T ss_dssp EEEEEEEETTEEEEEEEETTTE-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHCC-
T ss_pred EEEEEEEECCEEEEEEecCCCc-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHhhC
Confidence 9999999999999999999999 99999543 38899999999999766 899999999753
No 38
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.42 E-value=5.4e-13 Score=137.96 Aligned_cols=159 Identities=14% Similarity=0.212 Sum_probs=105.9
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEecccccccccc----------CCCCCcccHHHHHHHHHhhhcCCc
Q 002197 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDE----------GNDLDSIDFDALVQNLQDLTEGKD 126 (954)
Q Consensus 58 ~~~~~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs~Dd~y~~~~~----------~~~p~s~D~~~l~~~L~~l~~g~~ 126 (954)
..+++.+|+|+|++||||||+|+.|++.+ ++.++++|+++..... .+.++.+|...+.+.+..+..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~-- 94 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES-- 94 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH--
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC--
Confidence 34567899999999999999999999988 8999999998763211 1122345666666655544321
Q ss_pred cccccchhhhhccccccccccCCCcEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhc
Q 002197 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIF 205 (954)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~-~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~ 205 (954)
..+|...... ....+.+++|+||+++++ ..+.+.+|.++|++++.+.++.|+..|........+.+...++
T Consensus 95 ~~~~~~~~~~--------~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~ 166 (207)
T 2qt1_A 95 ARHSVVSTDQ--------ESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVW 166 (207)
T ss_dssp HTTSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHH
T ss_pred CCCCCcCCCe--------eecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHh
Confidence 1122111111 112345799999999887 5778899999999999999999988875322122223334666
Q ss_pred hhhhhccCCCcCcccEE--EECC
Q 002197 206 PLFRKHIEPDLHHAQIR--INNR 226 (954)
Q Consensus 206 p~~~~~Iep~~~~ADiI--I~N~ 226 (954)
+.|..+++.....||.| |+|+
T Consensus 167 ~~~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 167 PMYLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp HHHHHHHHHGGGCSSCCEEEETT
T ss_pred HHHHHHHHHHHhcCCeEEEecCC
Confidence 66665554445667766 8887
No 39
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=99.42 E-value=3.6e-13 Score=143.23 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=110.9
Q ss_pred cccccccccceeccccCCCCcccccccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEee--------------h
Q 002197 253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVG--------------R 318 (954)
Q Consensus 253 ~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~--------------v 318 (954)
......+.+.||+.|+++++..+.+| |||..+ + +|+|+|...+..-....+.|++.. +
T Consensus 48 ~~~~~~q~n~YfDTpd~~L~~~~~aL-----RiR~~~-~--~tlK~p~~~g~~~~~~ey~e~~~~~~~~~~~~~~~~~~~ 119 (234)
T 3bhd_A 48 LEYRVTFRDTYYDTPELSLMQADHWL-----RRREDS-G--WELKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLRADG 119 (234)
T ss_dssp EEEEEEEEEEEEECTTCHHHHTTCEE-----EEETTT-E--EEEEEESSBTTBCTTSEEEEECSHHHHHHHHHHHHTC--
T ss_pred CCCcceEEEEEeeCCChHHHhCCcEE-----EEECCC-C--eEEecCCccCccCCcceeccccCccchhhhhhhhhcCCc
Confidence 44456799999999999999999999 999865 3 899988654321001344455543 1
Q ss_pred ----hHHHHHHhcCCceeEEEEEEEEEEEe--------C-CEEEEEecCCCCCCCeEEEEec--C-------hhHHHHHH
Q 002197 319 ----MTLGGLLDLGYSVVASYKRASTYVVY--------G-NLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEA 376 (954)
Q Consensus 319 ----~~~~~L~~LGf~~~~~v~K~R~~~~~--------~-~~~i~lD~v~~lG~~FvEiE~~--~-------~~~v~~~a 376 (954)
.+..+|..+||.|+++++|.|++|.+ + +++|+||+++ +|.+|+|||.+ + .+.+.++|
T Consensus 120 ~~~~~~~~~L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la 198 (234)
T 3bhd_A 120 LGAGDVAAVLGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRLS 198 (234)
T ss_dssp -CCSSHHHHHHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHHH
Confidence 46778889999999999999999999 8 9999999999 99999999976 2 25788999
Q ss_pred HHcCCCCCccchhHHHHHHhhcC
Q 002197 377 LRMGINGPWITKSYLEMVLEKKG 399 (954)
Q Consensus 377 ~~Lgl~~~~~~~sYlel~l~~~~ 399 (954)
++|||+.+..+++|++.+++...
T Consensus 199 ~~Lgl~~~~~~~~k~~~~l~~~~ 221 (234)
T 3bhd_A 199 SMLGVPAQETAPAKLIVYLQRFR 221 (234)
T ss_dssp HHHTCCTTCCCCCHHHHHHHHHC
T ss_pred HHcCCCccccchHHHHHHHHHhC
Confidence 99999988889999998887553
No 40
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.42 E-value=1.6e-13 Score=143.38 Aligned_cols=160 Identities=21% Similarity=0.171 Sum_probs=116.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchh---------h----hccccCCCCCcccHHHHHHHHH--
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---------Q----VKDFKYDDFSSLDLSLLSKNIS-- 578 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~---------~----~~~~n~d~p~t~D~~lL~~~L~-- 578 (954)
....+-|||+|++||||||+++.|++ +|+.++++|...+.- + .+..-++..+++|...|.+.+.
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d 84 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD 84 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence 34678999999999999999999998 999999999876541 0 1122244567899999888663
Q ss_pred --HHHcCCceecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccc
Q 002197 579 --DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (954)
Q Consensus 579 --~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg 655 (954)
.++.-+.+.+|..-.....+.. ..+.+++++|.++++. ..+...+|..|+|++|.++++.|.+.|| |
T Consensus 85 ~~~~~~L~~i~HP~I~~~~~~~~~------~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g 154 (210)
T 4i1u_A 85 EDARRRLEAITHPLIRAETEREAR------DAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----G 154 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------TCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH------hcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----C
Confidence 2333455667775444332221 1234689999999999 8999999999999999999999999997 4
Q ss_pred cccch-hhHHhhhcchhhhhcccccCcccEEEcCC
Q 002197 656 CFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 656 ~~~~~-~q~~~~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
.+.+. ........|..++ ...||+||+|+
T Consensus 155 ~s~eea~~ri~~Q~~~eek-----~~~AD~VIdN~ 184 (210)
T 4i1u_A 155 FTREQVEAIIARQATREAR-----LAAADDVIVND 184 (210)
T ss_dssp CCHHHHHHHHHHSCCHHHH-----HHTCSEEEECS
T ss_pred CCHHHHHHHHHHcCChHHH-----HHhCCEEEECC
Confidence 44333 2344445555333 46799999997
No 41
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=99.41 E-value=6.8e-13 Score=135.26 Aligned_cols=122 Identities=25% Similarity=0.305 Sum_probs=104.9
Q ss_pred cccccccCCCCCCCCCcCCcc-eEEEEee--CCEEEEEeeccccccCcccccceeEEe--hhhHHHHHHHhCceeeeeee
Q 002197 730 FIDMYLRLPGIPTNGQLTESD-CIRVRIC--EGRFALLIREPLREGNFIIQPKVDFDI--SISTVAGLLNLGYQAVAYIE 804 (954)
Q Consensus 730 y~~~Y~~~~~l~~~~~~~~~~-~irir~~--~~~~~l~~~~~~~d~~~~~~~~~~~~v--~~~~~~~l~~lg~~~~~~~~ 804 (954)
-.|+||..| ++.++.++ ++|||.. ++...|++++|. .+++.+++| ...+...|.+|||+++..++
T Consensus 41 q~d~Yfd~p----~~~l~~~~~~lRiR~~~~~~~~~lt~kg~~------~~~e~e~~v~~~~~~~~~l~~lg~~~~~~~~ 110 (179)
T 3n10_A 41 EKDIYLDAN----GQDLAKQQISMVLREMNPSGIRLWIVKGPG------AERCEASNIEDVSKVQSMLATLGYHPAFTIE 110 (179)
T ss_dssp EEEEEEECT----TCTTGGGTCEEEEEEEETTCCEEEEEECSS------SSBEEEEECSCHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEEeCC----ChhHHhCCceEEEEecCCCceEEEEEcCCc------cccceeeccCCHHHHHHHHHhCCCeEEEEEE
Confidence 469999888 66666655 9999985 467889999985 467788888 77899999999999999999
Q ss_pred eeeEEeecCcEEEEEecccCCCCceEEEe---------cccHHHHHHHHhhcCCC-CCccchhHHHHH
Q 002197 805 ASAFIYQDGKILIEVDHLQDAPSPYLQIK---------GVDKEAVAAAGSTLKLD-GSYTTKSYLQII 862 (954)
Q Consensus 805 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~v~~~~~~l~~~-~~~~~~syle~~ 862 (954)
+.|++|..+++.|++|+++++| +|+||- ...++.+.+++++|||+ +..+++||+||+
T Consensus 111 k~R~~~~~~~~~v~lD~v~~lG-~f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 111 KQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp EEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred EEEEEEEECCEEEEEEeccCCC-cEEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 9999999999999999999999 999993 23467899999999994 678899999985
No 42
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.41 E-value=4.8e-13 Score=139.47 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=98.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCC-----------------CCcccHHHHHHHHHhh--
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQDL-- 121 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~-----------------p~s~D~~~l~~~L~~l-- 121 (954)
++++|+|+|++||||||+++.|++ +|+.++++|.+++.....+. .+.++...+...++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 468999999999999999999998 99999999998765332111 1224444443332210
Q ss_pred --hcCCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHH
Q 002197 122 --TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (954)
Q Consensus 122 --~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~ 199 (954)
...+.+..|.+.......... ....++|++++++++..+...+|.+|||++|+++++.|...|+.........
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~-----~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~ 156 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQ-----ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQ 156 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----CCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHh-----cCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 000112233332221111111 0235788999988876677789999999999999999999886433222333
Q ss_pred HHHhhchhhhhccCCCcCcccEEEECCC
Q 002197 200 LIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 200 ~~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
.+....+.+.. ...||++|+|+.
T Consensus 157 ~~~~~~~~~~~-----~~~ad~vId~~~ 179 (218)
T 1vht_A 157 ILAAQATREAR-----LAVADDVIDNNG 179 (218)
T ss_dssp HHHHSCCHHHH-----HHHCSEEEECSS
T ss_pred HHHhcCChHHH-----HHhCCEEEECCC
Confidence 33333443332 456899999984
No 43
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.38 E-value=2.1e-13 Score=140.43 Aligned_cols=154 Identities=12% Similarity=0.131 Sum_probs=92.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCC-----------------CCcccHHHHHHHHHhhhc-
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQDLTE- 123 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~-----------------p~s~D~~~l~~~L~~l~~- 123 (954)
|++|+|+|++||||||+++.|++ +|+.++++|++++.....+. .+..+...+...+..-..
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 79 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEK 79 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHH
Confidence 46899999999999999999999 99999999998765322110 112333333221110000
Q ss_pred ---CCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002197 124 ---GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (954)
Q Consensus 124 ---g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~ 200 (954)
...+.+|.+........ .......++|+||+++++..+...+|.+|||++|.++++.|...| ..........
T Consensus 80 ~~~l~~l~~~~v~~~~~~~~----~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-~~~~~~~~~~ 154 (204)
T 2if2_A 80 LRKLEEITHRALYKEIEKIT----KNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR-GMSEEDFERR 154 (204)
T ss_dssp HHHHHHHHHHHHTTTHHHHH----HHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT-CCCHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHH----HhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc-CCCHHHHHHH
Confidence 00011111111111100 001111689999999988777788999999999999999999988 2221222223
Q ss_pred HHhhchhhhhccCCCcCcccEEEECC
Q 002197 201 IDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 201 ~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
++.+.+... ....||++|+|+
T Consensus 155 ~~~~~~~~~-----~~~~ad~vId~~ 175 (204)
T 2if2_A 155 WKKQMPIEE-----KVKYADYVIDNS 175 (204)
T ss_dssp HTTSCCHHH-----HGGGCSEECCCS
T ss_pred HHhCCChhH-----HHhcCCEEEECC
Confidence 333333322 256789999988
No 44
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.38 E-value=1.4e-12 Score=134.84 Aligned_cols=162 Identities=19% Similarity=0.264 Sum_probs=109.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh-CCceeccccccchhhhcc------ccCCCCCcccHHHHHHHHHHHHcCCce
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKD------FKYDDFSSLDLSLLSKNISDIRNGRRT 586 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~L-g~~vIs~Ddfy~~~~~~~------~n~d~p~t~D~~lL~~~L~~L~~g~~v 586 (954)
.+.+.+|||+|++||||||+|+.|+..+ ++.++++|+|+.+.+... .+++.++++|...+.+.+..+.++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~-- 95 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA-- 95 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC--
Confidence 3457899999999999999999999988 899999999987643211 1234566788888887776654421
Q ss_pred ecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccchhhHHh
Q 002197 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM 665 (954)
Q Consensus 587 ~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~ 665 (954)
..|.... ......+.+++|+||++++. +.+.+.+|..+|++++.+.++.|+..|.... ... ...+..
T Consensus 96 ~~~~~~~---------~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~--e~~-~~~~~~ 163 (207)
T 2qt1_A 96 RHSVVST---------DQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQP--PDS-PGYFDG 163 (207)
T ss_dssp TTSSCCC--------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSS--CCC-TTHHHH
T ss_pred CCCCcCC---------CeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCc--cch-HHHHHH
Confidence 1222111 11112346899999998875 5677889999999999999999987774211 111 112334
Q ss_pred hhcchhhhhcccccCcccEE--EcCC
Q 002197 666 TVFPMFQQHIEPHLVHAHLK--IRND 689 (954)
Q Consensus 666 ~v~p~~~~~Iep~~~~ADiv--I~n~ 689 (954)
.+++.|..+++.....+|.+ |+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 164 HVWPMYLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp THHHHHHHHHHHGGGCSSCCEEEETT
T ss_pred HHhHHHHHHHHHHHhcCCeEEEecCC
Confidence 66777776655555556655 6665
No 45
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.35 E-value=3.6e-13 Score=137.91 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=97.4
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc-cCC------C-----CCcccHHHHHHHHHhhhc---
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-EGN------D-----LDSIDFDALVQNLQDLTE--- 123 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~-~~~------~-----p~s~D~~~l~~~L~~l~~--- 123 (954)
.+++.+|+|+|++||||||+|+.|++. |+.++++|++++... ... . .+.++...+...+.....
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~ 83 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK 83 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence 346789999999999999999999997 999999999875432 100 0 112333333322211000
Q ss_pred -CCccccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002197 124 -GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (954)
Q Consensus 124 -g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~ 202 (954)
...+.+|.+. ...+.. ....+..++|+||+++++..+...+|.+|||+++.+.++.|...|+..........+.
T Consensus 84 ~l~~~~~~~i~---~~~i~~--~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i~ 158 (203)
T 1uf9_A 84 ALEAVVHPEVR---RLLMEE--LSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARER 158 (203)
T ss_dssp HHHHHHHHHHH---HHHHHH--HHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHT
T ss_pred HHHHHhChHHH---HHHHHH--hhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 0011122221 011110 0112357999999988887777788999999999999999999886433233333333
Q ss_pred hhchhhhhccCCCcCcccEEEECCC
Q 002197 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 203 ~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
...+.+.. ...||++|+|+.
T Consensus 159 ~~~~~~~~-----~~~ad~vId~~~ 178 (203)
T 1uf9_A 159 AQMPEEEK-----RKRATWVLENTG 178 (203)
T ss_dssp TSCCHHHH-----HHHCSEEECCSS
T ss_pred HCCChhHH-----HHhCCEEEECCC
Confidence 33443322 467899998883
No 46
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.34 E-value=7.9e-13 Score=144.19 Aligned_cols=164 Identities=13% Similarity=0.142 Sum_probs=105.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh-------------hccccCCCCCcccHHHHHHHH---
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-------------VKDFKYDDFSSLDLSLLSKNI--- 577 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~-------------~~~~n~d~p~t~D~~lL~~~L--- 577 (954)
.++|++|||+|++||||||+|+.|+ .+|+.+|++|++++..- .+..-++..+.+|...+...+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3568999999999999999999999 58999999999954310 011011223567776654322
Q ss_pred -HHHHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCcccccc
Q 002197 578 -SDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (954)
Q Consensus 578 -~~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~ 656 (954)
..+...+.+.+|.+.....++.. .. ...+.++||+||.+++...+...+|..||+++|.++++.|+..|+ |.
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~--~~-~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~ 223 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMD--VA-VAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD----GL 223 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HH-HHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----CC
T ss_pred HHHHHHhhcccChHHHHHHHHHHH--HH-hccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC----CC
Confidence 22222334566766554433321 11 112347999999988877777889999999999999999999886 33
Q ss_pred ccch-hhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 657 FMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 657 ~~~~-~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
+.+. .+.+....+.. .++ ..||++|+|+.
T Consensus 224 s~e~~~~ri~~q~~~~-~~~----~~AD~vIdn~~ 253 (281)
T 2f6r_A 224 SEAAAQSRLQSQMSGQ-QLV----EQSNVVLSTLW 253 (281)
T ss_dssp CHHHHHHHHHTSCCHH-HHH----HTCSEEEECSS
T ss_pred CHHHHHHHHHHcCChH-hhH----hhCCEEEECCC
Confidence 3322 12222223322 221 35899999873
No 47
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=99.25 E-value=6.4e-12 Score=129.29 Aligned_cols=125 Identities=19% Similarity=0.271 Sum_probs=105.5
Q ss_pred hcccccccCCCCCCCCCcCCcc-eEEEEeeC--CEEEEEeeccccccCcccccceeEEe--hhhHHHHHHHhCceeeeee
Q 002197 729 NFIDMYLRLPGIPTNGQLTESD-CIRVRICE--GRFALLIREPLREGNFIIQPKVDFDI--SISTVAGLLNLGYQAVAYI 803 (954)
Q Consensus 729 ~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~--~~~~l~~~~~~~d~~~~~~~~~~~~v--~~~~~~~l~~lg~~~~~~~ 803 (954)
...|+||..| ++.++.++ +||||..+ +.+.+++|+|..++.. +++| ...+..+|.+|||+++..+
T Consensus 42 ~q~d~YfDtp----~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~~~~------e~~v~d~~~~~~~L~~lgl~~~~~~ 111 (189)
T 2aca_A 42 QESDWFYDTP----QRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCE------ATNITKLDSAQSMLENMGYEVIQCS 111 (189)
T ss_dssp EEEEEEEECT----TCHHHHTTCEEEEEEEETTTEEEEEEECSSTTBEE------EEEBSCHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEEeCC----CcchhhCCeEEEEEEecCCCcEEEEEcCCCcCceE------EEecCCHHHHHHHHHHcCCcEEEEE
Confidence 4679999888 77776666 99999864 4788999999998753 6677 4467888888999999999
Q ss_pred eeeeEEeecCcEEEEEecccCCCCceEEEe---------cccHHHHHHHHhhcCCCC-CccchhHHHHHHh
Q 002197 804 EASAFIYQDGKILIEVDHLQDAPSPYLQIK---------GVDKEAVAAAGSTLKLDG-SYTTKSYLQIILE 864 (954)
Q Consensus 804 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~v~~~~~~l~~~~-~~~~~syle~~~~ 864 (954)
++.|++|..+++.|++|.++++| .|+||- ...+..+.+++++|||+. ..+++||++|+++
T Consensus 112 ~k~R~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~~ll~~ 181 (189)
T 2aca_A 112 KKIRSIFFVGEFHITLDFLDGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEILSA 181 (189)
T ss_dssp EEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTTTSSCC
T ss_pred EEEEEEEEECCEEEEEEcccCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhHHHHHHh
Confidence 99999999999999999999999 998882 234789999999999954 4889999998753
No 48
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.24 E-value=1.5e-11 Score=126.31 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=91.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccccc----CCCCCcccHHHHHHHHHhhh--------------cCC
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE----GNDLDSIDFDALVQNLQDLT--------------EGK 125 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~----~~~p~s~D~~~l~~~L~~l~--------------~g~ 125 (954)
+|+|+|++||||||+|+.|++.+|++++++|.+++.... .+. ...+.+.+...+..+. .|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 82 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGV-DPGDEEGLLALLEGLGVRLLAQAEGNRVLADGE 82 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHTTCEEECCTTCCEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCC-CCCCHHHHHHHHHhCceeeeecCCCceEEECCe
Confidence 899999999999999999999999999999999875321 111 1112233333333211 111
Q ss_pred ccccccchhh---------hhcccc----ccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002197 126 DTLIPMFDYQ---------QKNRIG----SKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (954)
Q Consensus 126 ~i~~p~~d~~---------~~~~~~----~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~ 192 (954)
.+..+..... .++.+. ....... ..+|+||..++ ..+.+.+|++|||++|.++++.|+..|+.
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r~~- 158 (208)
T 3ake_A 83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARERP- 158 (208)
T ss_dssp ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHTSS-
T ss_pred eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhhcc-
Confidence 1111100000 011110 0000112 47899999887 45566789999999999999999998864
Q ss_pred CccCHHHHHHhhchhhhhccCCCcCccc-EEEECCC
Q 002197 193 DSCSLDSLIDSIFPLFRKHIEPDLHHAQ-IRINNRF 227 (954)
Q Consensus 193 ~r~~~e~~~~~v~p~~~~~Iep~~~~AD-iII~N~~ 227 (954)
.+.+++.+.+......+.......|| ++|+|+.
T Consensus 159 --~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~ 192 (208)
T 3ake_A 159 --QAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGG 192 (208)
T ss_dssp --SCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTT
T ss_pred --cCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCC
Confidence 23343333322111111111146688 9999883
No 49
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.22 E-value=4.5e-12 Score=141.21 Aligned_cols=171 Identities=18% Similarity=0.154 Sum_probs=118.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc--ccccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~--y~~~~~~~-~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
+++|+|+||+||||||+|..|++.+++.+|++|+| |++++... .|...+...+..+|.++..+.+ .++.++|....
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~~a 85 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKKRA 85 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHHHH
Confidence 36999999999999999999999999999999998 88775432 2222222222334444555555 67788887766
Q ss_pred cccccccccCCCcEEEEEecccchhhhhcCCCEEEEEE-cCHH--HHHHHHHHhccCCcc--CHHHHHHhhchhhhhccC
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVV-GGVH--FSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIE 213 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vd-a~~~--~rl~Rri~RD~~~r~--~~e~~~~~v~p~~~~~Ie 213 (954)
+.........+..+||++|.+++...+...+| +|++ ++.+ .+++|++.| ...++ ...+.++.+.|.+..+|.
T Consensus 86 ~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~~l~~~L~~vdP~~a~~I~ 162 (340)
T 3d3q_A 86 EKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNNKLHEYLASFDKESAKDIH 162 (340)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHCHHHHHHSC
T ss_pred HHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHHHHHHHHHhhCcHHHhhcC
Confidence 64433333455678889999988777777776 6788 8887 678888888 55542 345556677888887664
Q ss_pred CCcCcccEEEECCCCCchhhhhhhhcccCc-CCCCCccccc
Q 002197 214 PDLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAF 253 (954)
Q Consensus 214 p~~~~ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~ 253 (954)
| || +..++++.+. ..+|.+.+.+
T Consensus 163 p----------~d-------~~Ri~RALEv~~~tG~~~s~~ 186 (340)
T 3d3q_A 163 P----------NN-------RKRVLRAIEYYLKTKKLLSSR 186 (340)
T ss_dssp T----------TC-------HHHHHHHHHHHHHHCSCSHHH
T ss_pred c----------cC-------chhhhhHHHHHHHhCCChHHH
Confidence 3 45 6677777776 6677665544
No 50
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.21 E-value=9.4e-12 Score=128.36 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=90.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh-------------ccccCCCCCcccHHHHHHHHHH----
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNISD---- 579 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~-------------~~~n~d~p~t~D~~lL~~~L~~---- 579 (954)
+++|||+||+||||||+++.|+. +|..++++|++++.... +...+...+..+...+.+.+-.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 46899999999999999999988 99999999999864110 0001111223444333322100
Q ss_pred HHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccc
Q 002197 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (954)
Q Consensus 580 L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~ 659 (954)
+.....+.+|.+........ . ......+|+||.+++...+...+|..||++++.+.++.|...|+ |.+.+
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~-----~-~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e 150 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKL-----A-EQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFE 150 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----H-TCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred HHHHHhccCHHHHHHHHHHH-----H-hcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 00001233444433221111 0 01235889999887765577889999999999999999999886 33322
Q ss_pred h-hhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 660 ~-~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
. .+......+... ....||++|+|+.
T Consensus 151 ~~~~r~~~q~~~~~-----~~~~ad~vIdn~~ 177 (206)
T 1jjv_A 151 QIQRIMNSQVSQQE-----RLKWADDVINNDA 177 (206)
T ss_dssp HHHHHHHHSCCHHH-----HHHHCSEEEECCS
T ss_pred HHHHHHHhcCChHH-----HHHhCCEEEECCC
Confidence 2 122222223222 2346999999875
No 51
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.17 E-value=2.2e-11 Score=120.65 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=88.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~ 142 (954)
++|+|+|++||||||+|+.| +.+|+.++++|++.+...........+...+...+.... +.... ......
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~---- 71 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIY-GDGVV----ARLCVE---- 71 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHH-CTTHH----HHHHHH----
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhC-CHHHH----HHHHHH----
Confidence 47999999999999999999 889999999998766432111122222333332222211 11111 000000
Q ss_pred cccccCCCcEEEEEecccch--hhhhc---CCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhchhhhhccCCCc
Q 002197 143 KVIKGASSGVVIVDGTYALD--ARLRS---LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDL 216 (954)
Q Consensus 143 ~~~~~~~~~vVIvEG~~ll~--~~l~~---~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~v~p~~~~~Iep~~ 216 (954)
.........+|++|..... ..+.. ..+..||+++|.+++..|...|+.... .+.+.+.+++.......+.+..
T Consensus 72 -~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 150 (179)
T 3lw7_A 72 -ELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVI 150 (179)
T ss_dssp -HHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHH
T ss_pred -HHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHH
Confidence 1101334679999973222 23333 345899999999999999999875432 4555555543211111123346
Q ss_pred CcccEEEECCC
Q 002197 217 HHAQIRINNRF 227 (954)
Q Consensus 217 ~~ADiII~N~~ 227 (954)
..||++|+|+.
T Consensus 151 ~~ad~vId~~~ 161 (179)
T 3lw7_A 151 AMADYIITNDS 161 (179)
T ss_dssp HTCSEEEECCS
T ss_pred HhCCEEEECCC
Confidence 78999999883
No 52
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.15 E-value=3e-12 Score=142.70 Aligned_cols=153 Identities=14% Similarity=0.204 Sum_probs=101.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc--cchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf--y~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~ 594 (954)
+.+|+|+||+||||||||..|++.+++.+||+|+| |+...... ..|..-+.......|..+..+.. ..|.|||.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~T---akp~~eE~~~v~hhl~di~~~~~-~~~~~dF~ 82 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGT---AKVTTEEMEGIPHYMIDILPPDA-SFSAYEFK 82 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTT---TCCCTTTTTTCCEESSSCBCTTS-CCCHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccc---cCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHH
Confidence 36899999999999999999999999999999999 77522110 00100000000011122233333 56777777
Q ss_pred ccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEE-cChh--HHHHHHHhcCccccccccchhhHHhhhcchh
Q 002197 595 TGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVV-GGVH--SHLISRVQRDKSRMGCFMSQNDIMMTVFPMF 671 (954)
Q Consensus 595 ~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~-~~~d--~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~ 671 (954)
.+.+...... ...+..+||++|..++.+.+...+| +|++ ++.+ .|+.|++.| ..++|.. ...+++..+.|.+
T Consensus 83 ~~a~~~i~~i-~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~-~l~~~L~~vdP~~ 157 (340)
T 3d3q_A 83 KRAEKYIKDI-TRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNN-KLHEYLASFDKES 157 (340)
T ss_dssp HHHHHHHHHH-HHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHH-HHHHHHHHHCHHH
T ss_pred HHHHHHHHHH-HhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHH-HHHHHHHhhCcHH
Confidence 6554421111 1235578888888876677877776 6777 7777 788999999 8888864 3467888999999
Q ss_pred hhhcccc
Q 002197 672 QQHIEPH 678 (954)
Q Consensus 672 ~~~Iep~ 678 (954)
.++|+|.
T Consensus 158 a~~I~p~ 164 (340)
T 3d3q_A 158 AKDIHPN 164 (340)
T ss_dssp HHHSCTT
T ss_pred HhhcCcc
Confidence 9999875
No 53
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=99.13 E-value=6.7e-11 Score=123.53 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=104.0
Q ss_pred cccccccccccceeccccCCCCcccccccCCceeEeeeCC-----------eEEEEEcceeccCCCccccceeEEEeeh-
Q 002197 251 SAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGI-----------RYYLSIGDQRIVDKNFIIRPKAEFEVGR- 318 (954)
Q Consensus 251 ~~~~~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~-----------~~~ltyKgp~i~~~~~~~k~r~E~ev~v- 318 (954)
........|.+.||+.|+++++..+.++ |||..++ +..+|||+|.....+. ..++|++..+
T Consensus 24 ~~~~~~~~~~~~y~dt~~~~l~~~~~~l-----r~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~--~~~~e~~~~~~ 96 (210)
T 3v85_A 24 PYHLKTLHQRNTFFDTPKNDLSLRRAVL-----RLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGI--SRVEEDEEEIE 96 (210)
T ss_dssp GGEEEEEEEEEEEEECTTCHHHHTTEEE-----EEEEEEC------CCCCCEEEEEEEEEEEEETTE--EEEEEEEEEEC
T ss_pred ccccceEEEEEEEEeCCCHHHHhCCcEE-----EEEEeCCccceeccCCCcceEEEEecCCcCCCCc--eeEEEEeecCC
Confidence 3445667789999999999999999999 9998644 6789999998887775 6788888765
Q ss_pred --------------------------hHHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEecCC-CCCCCeEEEEec--Ch
Q 002197 319 --------------------------MTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETID-TLDETFMVLRGT--NR 369 (954)
Q Consensus 319 --------------------------~~~~~L~~LGf~~~~~v~K~R~~~~~~~~~i~lD~v~-~lG~~FvEiE~~--~~ 369 (954)
.+.+++..+||.+.+.+++.|..|.+++..|+||++. ..|. |+|||.+ |.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~-~~ELEle~~d~ 175 (210)
T 3v85_A 97 YWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGN-CYEIECETEEP 175 (210)
T ss_dssp HHHHHHHHHCGGGGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEECSCH
T ss_pred hhHHHHhhhhhhccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcE-EEEEEEEeCCH
Confidence 1122345689999999999999999999999999998 4577 9999987 32
Q ss_pred ----hHHHHHHHHcCCCCCc
Q 002197 370 ----KTVGAEALRMGINGPW 385 (954)
Q Consensus 370 ----~~v~~~a~~Lgl~~~~ 385 (954)
+.+.++++++||+-..
T Consensus 176 e~~~~~~~~lL~~~gI~~~~ 195 (210)
T 3v85_A 176 ERVKTMIEEFLTEEKIEFSN 195 (210)
T ss_dssp HHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHcCCCcCc
Confidence 6678999999997654
No 54
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.12 E-value=9.1e-11 Score=122.41 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=85.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc-----cCCCCCcccHHHHHHHHHhh--------------h
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDLDSIDFDALVQNLQDL--------------T 122 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~-----~~~~p~s~D~~~l~~~L~~l--------------~ 122 (954)
+.+|+|+|++||||||+++.|++.+|++++++|++++... .+.... +...+......+ .
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVA--SEDALVPLASHLDVRFVSTNGNLEVIL 82 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTT--CHHHHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCcc--CHHHHHHHHHhCceeeeccCCCceEEE
Confidence 4689999999999999999999999999999999887432 221111 111122211111 0
Q ss_pred cCCccccccchhh---------hhcccc----ccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 002197 123 EGKDTLIPMFDYQ---------QKNRIG----SKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (954)
Q Consensus 123 ~g~~i~~p~~d~~---------~~~~~~----~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~R 189 (954)
.+..+..+..+.. .++.+. ...........+|+||..+.+ .+...+|.+||++++.++++.|+..+
T Consensus 83 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-~~~~~~d~~i~l~~~~e~~~~R~~~~ 161 (227)
T 1cke_A 83 EGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-VVFPDAPVKIFLDASSEERAHRRMLQ 161 (227)
T ss_dssp TTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-eEecCCCEEEEEeCCHHHHHHHHHHH
Confidence 1111000110100 001110 000111234578999986543 34467899999999999999997543
Q ss_pred --ccCCccCHHHHHHhh----chhhhhccCCCcCc-ccEEEECC
Q 002197 190 --DIGDSCSLDSLIDSI----FPLFRKHIEPDLHH-AQIRINNR 226 (954)
Q Consensus 190 --D~~~r~~~e~~~~~v----~p~~~~~Iep~~~~-ADiII~N~ 226 (954)
......+.++..+.+ .+.+.+.++|.... ++++|+|+
T Consensus 162 l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~ 205 (227)
T 1cke_A 162 LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDST 205 (227)
T ss_dssp HHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETT
T ss_pred HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCC
Confidence 111112344444333 34555555666544 45889888
No 55
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.11 E-value=1.1e-10 Score=118.23 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=76.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~ 141 (954)
+.+|+|+|++||||||+|+.|++.+|+.+|++|++.+.....+. +.....+.+.+. .|.....+...........
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~--~~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~~ 77 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPD--SQYGELIEKYIK---EGKIVPVEITISLLKREMD 77 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTT--STTHHHHHHHHH---TTCCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccC--ChHHHHHHHHHH---CCCcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998664322111 111122333222 2322111111111111111
Q ss_pred ccccccCCCcEEEEEecccchh---hhhc------CCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 142 SKVIKGASSGVVIVDGTYALDA---RLRS------LLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~ll~~---~l~~------~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
...........+|+||...... .+.. .+|..||+++|+++++.|...|+.
T Consensus 78 ~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 78 QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 1111122346889999876432 1221 467899999999999999998874
No 56
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.11 E-value=3.3e-11 Score=123.90 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=93.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh---------c-cc---cCCCCCcccHHHHHHHHH----HH
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------K-DF---KYDDFSSLDLSLLSKNIS----DI 580 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~---------~-~~---n~d~p~t~D~~lL~~~L~----~L 580 (954)
++|+|+|++||||||+++.|+. +|+.++++|+++..... . .+ .++..+..+...|.+.+. .+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 99999999999764210 0 00 111234556555544220 00
Q ss_pred HcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch
Q 002197 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (954)
Q Consensus 581 ~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~ 660 (954)
+.-..+..|.+........ .......++|+||.+++...+...+|..||++++.+.++.|...| |.+.+.
T Consensus 81 ~~l~~l~~~~v~~~~~~~~-----~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-----~~~~~~ 150 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKIT-----KNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR-----GMSEED 150 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHH-----HHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT-----CCCHHH
T ss_pred HHHHHhhCHHHHHHHHHHH-----HhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc-----CCCHHH
Confidence 0001112233222111110 001111689999998877667778999999999999999999877 222211
Q ss_pred -hhHHhhhcchhhhhcccccCcccEEEcCC
Q 002197 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 661 -~q~~~~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
.+.+....+. .+....||++|+|+
T Consensus 151 ~~~~~~~~~~~-----~~~~~~ad~vId~~ 175 (204)
T 2if2_A 151 FERRWKKQMPI-----EEKVKYADYVIDNS 175 (204)
T ss_dssp HHHHHTTSCCH-----HHHGGGCSEECCCS
T ss_pred HHHHHHhCCCh-----hHHHhcCCEEEECC
Confidence 1222222222 12345689998876
No 57
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.09 E-value=1.4e-10 Score=120.81 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=96.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh-------------hccccCCCCCcccHHHHHHHHHH---
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-------------VKDFKYDDFSSLDLSLLSKNISD--- 579 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~-------------~~~~n~d~p~t~D~~lL~~~L~~--- 579 (954)
++++|+|+|++||||||+++.|++ +|+.++++|++++... .+...++..+.+|...+...+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 478999999999999999999998 9999999999876411 01111222344665555443211
Q ss_pred -HHcCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCcccccccc
Q 002197 580 -IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (954)
Q Consensus 580 -L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~ 658 (954)
+...+.+..|.+......... . ....++|+|+.++....+...+|..||++++.+.++.|...|+. .+.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~--~----~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~----~~~ 151 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQ--Q----ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDD----VTR 151 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--H----CCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHT----CCH
T ss_pred HHHHHHHhHCHHHHHHHHHHHH--h----cCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcCC----CCH
Confidence 111112334444322211110 0 02357888998776544677899999999999999999888752 222
Q ss_pred ch-hhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 659 SQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 659 ~~-~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
+. .+......+.+. ....||++|+|+.
T Consensus 152 ~~~~~~~~~~~~~~~-----~~~~ad~vId~~~ 179 (218)
T 1vht_A 152 EHVEQILAAQATREA-----RLAVADDVIDNNG 179 (218)
T ss_dssp HHHHHHHHHSCCHHH-----HHHHCSEEEECSS
T ss_pred HHHHHHHHhcCChHH-----HHHhCCEEEECCC
Confidence 11 122222233322 1245899999875
No 58
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.08 E-value=6.7e-11 Score=120.93 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=95.7
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhh-h--cc--ccCCC---CCcccHHHHHHHHHH----HH
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-V--KD--FKYDD---FSSLDLSLLSKNISD----IR 581 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~-~--~~--~n~d~---p~t~D~~lL~~~L~~----L~ 581 (954)
.+++.+|+|+|++||||||+|+.|++. |+.++++|++++... . .. ..+.. .+++|...|.+.+.. +.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~ 83 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK 83 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence 356899999999999999999999997 999999999986422 0 00 01100 245566555443200 00
Q ss_pred cCCceecccccccccccCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccch-
Q 002197 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (954)
Q Consensus 582 ~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~- 660 (954)
..+.+..|.+. ..+.. . ....+..+||+||.+++...+.+.+|..||++++.+.++.|...|+. .+.+.
T Consensus 84 ~l~~~~~~~i~---~~~i~--~-~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~----~~~~~~ 153 (203)
T 1uf9_A 84 ALEAVVHPEVR---RLLME--E-LSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSG----LSREEV 153 (203)
T ss_dssp HHHHHHHHHHH---HHHHH--H-HHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTC----CTTHHH
T ss_pred HHHHHhChHHH---HHHHH--H-hhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCC----CCHHHH
Confidence 00112233332 01110 0 00123579999998777666667789999999999999999988752 22111
Q ss_pred hhHHhhhcchhhhhcccccCcccEEEcCC
Q 002197 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 661 ~q~~~~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
........+.+ +....||++|+|+
T Consensus 154 ~~~i~~~~~~~-----~~~~~ad~vId~~ 177 (203)
T 1uf9_A 154 LARERAQMPEE-----EKRKRATWVLENT 177 (203)
T ss_dssp HHHHTTSCCHH-----HHHHHCSEEECCS
T ss_pred HHHHHHCCChh-----HHHHhCCEEEECC
Confidence 12222222322 1134588998876
No 59
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.08 E-value=2.1e-10 Score=121.69 Aligned_cols=167 Identities=14% Similarity=0.174 Sum_probs=98.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc---cCCCCCcccHHHHHHHHHhhhc-------CCcccc-
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQDLTE-------GKDTLI- 129 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~---~~~~p~s~D~~~l~~~L~~l~~-------g~~i~~- 129 (954)
++++|+|+|++||||||+|+.|++.+|+.+++.|.+|+... .....+..|.+.+.+.+..+.- +..+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 46799999999999999999999999999999999988643 1111223344445444443210 001110
Q ss_pred ----------ccchh---------hhhccccccccccCCC-cEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 002197 130 ----------PMFDY---------QQKNRIGSKVIKGASS-GVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (954)
Q Consensus 130 ----------p~~d~---------~~~~~~~~~~~~~~~~-~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~R 189 (954)
+.+.. ................ .-+|+||--...- +.+..+++|||+++.+.|.+|+.++
T Consensus 88 g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~-V~pda~lkifl~A~~e~Ra~Rr~~~ 166 (233)
T 3r20_A 88 GEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTV-VLPDADVKIFLTASAEERARRRNAQ 166 (233)
T ss_dssp TEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCC-CCTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeE-EcCCCCEEEEEECCHHHHHHHHHHH
Confidence 11100 0000000000011122 4577788644321 2233789999999999999999875
Q ss_pred ccCCc--cCHHHHHHh----hchhhhhccCCCcCccc-EEEECCCC
Q 002197 190 DIGDS--CSLDSLIDS----IFPLFRKHIEPDLHHAQ-IRINNRFV 228 (954)
Q Consensus 190 D~~~r--~~~e~~~~~----v~p~~~~~Iep~~~~AD-iII~N~~~ 228 (954)
....+ .+.+++.+. -.....+++.|.+..+| ++|+++..
T Consensus 167 l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l 212 (233)
T 3r20_A 167 NVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDM 212 (233)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTS
T ss_pred HHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCC
Confidence 33222 344444433 34445577888888887 88888844
No 60
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.08 E-value=5.8e-10 Score=114.65 Aligned_cols=136 Identities=19% Similarity=0.124 Sum_probs=85.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccc-----ccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV-----DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~-----~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
.|.+|+|+|++||||||+|+.|++.+|+.+++.|.++... ..+......+.......+....
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~------------- 83 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERL------------- 83 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHH-------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHH-------------
Confidence 3678999999999999999999999999999999986421 1111111111111111111100
Q ss_pred hhccccccccccCCCcEEEEEecccch---hhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhh
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~~~---D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~ 209 (954)
.....+|+++.++.. ..+...+ +..||+++|.++++.|...|..... . .+.++.+...+
T Consensus 84 ------------~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~-~-~~~~~~~~~~~- 148 (202)
T 3t61_A 84 ------------ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFM-P-SSLLQTQLETL- 148 (202)
T ss_dssp ------------TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCC-C-HHHHHHHHHHC-
T ss_pred ------------hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCC-C-HHHHHHHHHhc-
Confidence 123356778776654 2333333 6899999999999999998874322 2 33344333222
Q ss_pred hccCCCcCcccEEEECC
Q 002197 210 KHIEPDLHHAQIRINNR 226 (954)
Q Consensus 210 ~~Iep~~~~ADiII~N~ 226 (954)
-.+....++++|+++
T Consensus 149 --~~~~~~~~~~~Id~~ 163 (202)
T 3t61_A 149 --EDPRGEVRTVAVDVA 163 (202)
T ss_dssp --CCCTTSTTEEEEESS
T ss_pred --CCCCCCCCeEEEeCC
Confidence 234566789999998
No 61
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=99.07 E-value=5.1e-10 Score=115.51 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=99.1
Q ss_pred cccccccceeccccCCCCcccccccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEeeh----------------
Q 002197 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---------------- 318 (954)
Q Consensus 255 ~~~~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v---------------- 318 (954)
....+.+.||+.|.++++..+.+| |||..|+++.+|+|+|..+ .+.|+++.+
T Consensus 32 ~~~~~~n~YfDTpd~~L~~~~~~L-----RiR~~~~~~~~TlK~~~~~-------g~~E~~~~l~~~ea~~~l~~~~~p~ 99 (195)
T 3tj7_A 32 VFTKQVNHYFETPNSSLKEAGSAL-----RIRHKGETYTLTLKQPAEV-------GLLETHQVVTENEAKMMMETNVIIS 99 (195)
T ss_dssp CCEEEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-------SEEEEEEEECHHHHHHHHHSSCCCS
T ss_pred ceEEEEEEEEeCCcHhHHhCCCEE-----EEEeECCeEEEEEeeCCCC-------CceEEEeeCCHHHHHHHhhcCCCCh
Confidence 346788999999999999999999 9999999999999998643 256777776
Q ss_pred -hHHHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEec--Ch----hHHHHHHHHcCCCCCc
Q 002197 319 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR----KTVGAEALRMGINGPW 385 (954)
Q Consensus 319 -~~~~~L~~LGf~~-----~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~--~~----~~v~~~a~~Lgl~~~~ 385 (954)
.+..+|..+||.. ++.+++.|..|.+.+..+|||++.++|..-.|||.. +. +.+.++++.+|++...
T Consensus 100 ~~i~~~l~~~g~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~ 178 (195)
T 3tj7_A 100 GAVMNQLCKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRH 178 (195)
T ss_dssp SHHHHHHHHHTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHcCCCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCC
Confidence 3777999999987 499999999999998999999999999741355544 33 6789999999998764
No 62
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.07 E-value=2.7e-10 Score=120.48 Aligned_cols=166 Identities=16% Similarity=0.211 Sum_probs=95.2
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc----cCCCCCcccHHHHHHHHHhh-------------
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDL------------- 121 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~----~~~~p~s~D~~~l~~~L~~l------------- 121 (954)
..++.+|+|+|++||||||+++.|++.+|+.++++|.+++... ..+.+ ..+.+.+...+..+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~f~~~~~~~~~ 91 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLG-VEEVEALLALLDQHPISFGRSETGDQL 91 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCC-TTCHHHHHHHHHHSCCEEEEETTTEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCC-cccHHHHHHHHHhccccccccCCccce
Confidence 4456799999999999999999999999999999999987532 12211 12233333333211
Q ss_pred --hcCCccccccchhh---------hhccc----cccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHH
Q 002197 122 --TEGKDTLIPMFDYQ---------QKNRI----GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISK 186 (954)
Q Consensus 122 --~~g~~i~~p~~d~~---------~~~~~----~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rr 186 (954)
..|..+....-... .++.+ ............+|++|..... .+...+|.+|||++++++++.|+
T Consensus 92 i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~-~~l~~~d~vi~L~a~~e~~~~R~ 170 (236)
T 1q3t_A 92 VFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT-VVLPQAELKIFLVASVDERAERR 170 (236)
T ss_dssp EEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS-SSGGGCSEEEEEECCHHHHHHHH
T ss_pred EeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh-hhccCCCEEEEEECCHHHHHHHH
Confidence 11111110000000 00000 0000011123467789886532 34456899999999999999998
Q ss_pred HHhccCC--ccCHHHH----HHhhchhhhhccCCCcCccc-EEEECC
Q 002197 187 VQYDIGD--SCSLDSL----IDSIFPLFRKHIEPDLHHAQ-IRINNR 226 (954)
Q Consensus 187 i~RD~~~--r~~~e~~----~~~v~p~~~~~Iep~~~~AD-iII~N~ 226 (954)
+.|.... ..+.+.+ .+++.+...+++.|....+| ++|+|+
T Consensus 171 ~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 171 YKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 5432111 1133332 23356666667777766666 999988
No 63
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.03 E-value=3.2e-10 Score=121.45 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=87.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc-----cCCCC-CcccHHHHHHHHHhhh-----------c
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDL-DSIDFDALVQNLQDLT-----------E 123 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~-----~~~~p-~s~D~~~l~~~L~~l~-----------~ 123 (954)
+..+|+|+|++||||||+++.|++.||...+++|.+++.+. .+... +......+...+.-.. .
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 45689999999999999999999999999999999885422 11111 2222222322111000 0
Q ss_pred CCccccccchhhh---------hccc----cccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 124 GKDTLIPMFDYQQ---------KNRI----GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 124 g~~i~~p~~d~~~---------~~~~----~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
+..+..+...... ++.+ ...........-+|++|-....- +.+.+|++|||+++++++..|+..+.
T Consensus 106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~l 184 (252)
T 4e22_A 106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQL 184 (252)
T ss_dssp TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHHH
Confidence 0000000000000 0000 00000122234578888655332 33447999999999999999987632
Q ss_pred cC--CccCHHHHHH----hhchhhhhccCCCcCccc-EEEECCCC
Q 002197 191 IG--DSCSLDSLID----SIFPLFRKHIEPDLHHAQ-IRINNRFV 228 (954)
Q Consensus 191 ~~--~r~~~e~~~~----~v~p~~~~~Iep~~~~AD-iII~N~~~ 228 (954)
.. ...+.+.+.+ +......+.+.|..+.|| ++|+|+..
T Consensus 185 ~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~ 229 (252)
T 4e22_A 185 QERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSM 229 (252)
T ss_dssp HHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSS
T ss_pred HhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCC
Confidence 11 1134444433 333445566788888888 88888843
No 64
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=99.02 E-value=1.4e-09 Score=112.09 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=97.6
Q ss_pred ccccceeccccCCCCcccccccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEeehh-----------------H
Q 002197 258 AQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM-----------------T 320 (954)
Q Consensus 258 ~e~D~Y~~~p~Rd~~~~deal~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v~-----------------~ 320 (954)
.+.+.||+.|+++++..+.+| |||..|+.+.+|+|+|... .|.|+|+.|. +
T Consensus 35 ~~~n~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~-------gR~E~e~~l~~~~~~~~l~~~~~p~~~~ 102 (193)
T 2gfg_A 35 LQRNHYFETDDFQLKKQSSAL-----RIREKEAIFTFTLKQPHPA-------GLLETNQTLSKQEAKLALESAHFPSGEV 102 (193)
T ss_dssp EEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-------SEEEEEEEECHHHHHHHHHHCCCCCSHH
T ss_pred eeEEEeeeCCCHHHHhCCCEE-----EEEeeCCcEEEEEccCCCC-------CCceEeccCCchhhhhhcccccCCcHHH
Confidence 488999999999999999999 9999999999999998642 4999999882 5
Q ss_pred HHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEecCCCCCCCeEEEEec--Ch----hHHHHHHHHcCCCCC
Q 002197 321 LGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR----KTVGAEALRMGINGP 384 (954)
Q Consensus 321 ~~~L~~LGf~~-----~~~v~K~R~~~~~~~~~i~lD~v~~lG~~FvEiE~~--~~----~~v~~~a~~Lgl~~~ 384 (954)
..+|..+|+.+ ++.++|.|..|.+++.+|+||.++..|.++.|||.. +. +.+.++++.+|+...
T Consensus 103 ~~~l~~~~~~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~~ 177 (193)
T 2gfg_A 103 MDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQV 177 (193)
T ss_dssp HHHHHHTTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCcC
Confidence 67888899774 899999999999998899999999888656777765 42 356788888999754
No 65
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.01 E-value=7.5e-10 Score=111.79 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=74.3
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
..+.+|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+.. |.... +......
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~~---g~~~~----~~~~~~~ 73 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSK---DGEMIATMIKN---GEIVP----SIVTVKL 73 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCT---THHHHHHHHHT---TCCCC----HHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCH---HHHHHHHHHHC---CCCCC----HHHHHHH
Confidence 34689999999999999999999999999999999976643222221 12223333221 21110 0001111
Q ss_pred ccccccccCCCcEEEEEecccchh---hh----hc--CCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 140 IGSKVIKGASSGVVIVDGTYALDA---RL----RS--LLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~~---~l----~~--~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
..... .......+|++|...... .+ .. .+|.+|||++|+++++.|...|+.
T Consensus 74 l~~~i-~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 74 LKNAI-DANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp HHHHH-HTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred HHHHH-HhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 11100 111345789998543321 12 22 578999999999999999998864
No 66
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.99 E-value=7.4e-10 Score=113.60 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=75.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh----ccccCCCCCcccHHHHHHHHHHHH-------------
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIR------------- 581 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~----~~~n~d~p~t~D~~lL~~~L~~L~------------- 581 (954)
+|+|+|++||||||+|+.|++.+|+.++++|++++.... ...++++ .+.+.+.+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGD-----EEGLLALLEGLGVRLLAQAEGNRVL 78 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTC-----HHHHHHHHHHTTCEEECCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCC-----HHHHHHHHHhCceeeeecCCCceEE
Confidence 899999999999999999999999999999999975321 1112222 223333333211
Q ss_pred -cCCceeccccccc---------ccccCC--ccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhc
Q 002197 582 -NGRRTKVPIFDLE---------TGARSG--FKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQR 649 (954)
Q Consensus 582 -~g~~v~~P~yD~~---------~~dr~~--~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~R 649 (954)
.|+.+..+..... .+...- .......-. ..+|+||.+++ ..+.+.+|.+||+++|.+.++.|+..|
T Consensus 79 ~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r 156 (208)
T 3ake_A 79 ADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARE 156 (208)
T ss_dssp ETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHT
T ss_pred ECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhh
Confidence 1111100000000 000000 000000011 57899999877 345566899999999999999999888
Q ss_pred Cc
Q 002197 650 DK 651 (954)
Q Consensus 650 D~ 651 (954)
+.
T Consensus 157 ~~ 158 (208)
T 3ake_A 157 RP 158 (208)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 67
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.97 E-value=7.7e-10 Score=114.95 Aligned_cols=156 Identities=13% Similarity=0.192 Sum_probs=88.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccc----ccCCCCCcccHHHHHHHHHh---------------hh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV----DEGNDLDSIDFDALVQNLQD---------------LT 122 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~----~~~~~p~s~D~~~l~~~L~~---------------l~ 122 (954)
+++|+|+|++||||||+++.|++.+|+.++++|.+++.. ...+... . +.+.... +.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~--~---i~~~~~~~~~~f~~~~~~g~~i~~ 77 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTE--D---FAKLVDQTTLDLTYKADKGQCVIL 77 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCS--C---HHHHHHTCCEEEEECTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhH--H---HHHHHHhccccccccccccceEEe
Confidence 468999999999999999999999999999999998742 1111100 1 1111000 00
Q ss_pred cCCc-----------------cccccchhhhhccccccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHH
Q 002197 123 EGKD-----------------TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLIS 185 (954)
Q Consensus 123 ~g~~-----------------i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~R 185 (954)
.|.. +.+|.......... ........+|++|..+ ...+.+.+|.+|||++|.++++.|
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~----~~~~~~~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R 152 (219)
T 2h92_A 78 DNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQ----KELAAEKGIVMDGRDI-GTVVLPDADLKVYMIASVEERAER 152 (219)
T ss_dssp TTEECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHH----HHHHTTCCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHH
T ss_pred CCccchhhcCcHHHHHHHHHhccCHHHHHHHHHHH----HHhccCCcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHH
Confidence 1110 01111111100000 0111223578888744 223456689999999999999999
Q ss_pred HHHhccCCc--cCHHHHHHhh----chhhhhccCCCcCccc-EEEECCC
Q 002197 186 KVQYDIGDS--CSLDSLIDSI----FPLFRKHIEPDLHHAQ-IRINNRF 227 (954)
Q Consensus 186 ri~RD~~~r--~~~e~~~~~v----~p~~~~~Iep~~~~AD-iII~N~~ 227 (954)
++.+..... .+.+.+.+.+ .+...+.+.|....|| ++|+|+.
T Consensus 153 ~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~ 201 (219)
T 2h92_A 153 RYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTG 201 (219)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTT
T ss_pred HHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCC
Confidence 865321111 1444443332 2444445556655577 9999883
No 68
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.96 E-value=8.6e-10 Score=114.96 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=82.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh----ccccCCCCCcccHHHHHHHHHHH------------
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDI------------ 580 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~----~~~n~d~p~t~D~~lL~~~L~~L------------ 580 (954)
+.+|+|+||+||||||+++.|+..+|+.+++.|++++.... ...+.++ -..+.+....+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVAS-----EDALVPLASHLDVRFVSTNGNLE 79 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTC-----HHHHHHHHHTCCEEEEEETTEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccC-----HHHHHHHHHhCceeeeccCCCce
Confidence 46899999999999999999999999999999999985321 1111110 01111111110
Q ss_pred --HcCCceeccccccc---------ccccCCc---cceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHH
Q 002197 581 --RNGRRTKVPIFDLE---------TGARSGF---KELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (954)
Q Consensus 581 --~~g~~v~~P~yD~~---------~~dr~~~---~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr 646 (954)
..|..+.-+..+.. .+..... ...........+|+||..... .+.+.+|.+||++++.+.++.|+
T Consensus 80 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-~~~~~~d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 80 VILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-VVFPDAPVKIFLDASSEERAHRR 158 (227)
T ss_dssp EEETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHH
T ss_pred EEECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-eEecCCCEEEEEeCCHHHHHHHH
Confidence 00110000111100 0000000 000001234688999985443 34456899999999999999997
Q ss_pred HhcCccccccccch----hhHHhhhcchhhhhcccccCc-ccEEEcCC
Q 002197 647 VQRDKSRMGCFMSQ----NDIMMTVFPMFQQHIEPHLVH-AHLKIRND 689 (954)
Q Consensus 647 i~RD~~~rg~~~~~----~q~~~~v~p~~~~~Iep~~~~-ADivI~n~ 689 (954)
..+ ...+|..... .++.....+.+..+++|.... ++++|+|+
T Consensus 159 ~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~ 205 (227)
T 1cke_A 159 MLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDST 205 (227)
T ss_dssp HHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETT
T ss_pred HHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCC
Confidence 543 2234442111 122222233455555665543 44888776
No 69
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.95 E-value=7.5e-10 Score=109.45 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=84.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~d 597 (954)
++|+|+|++||||||+|+.| +.+|..++++|++++...... . +...+...+.+.+... .|..+.... ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~ 71 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIE-A---KPGERLMDFAKRLREI-YGDGVVARL----CVE 71 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHH-C------CCHHHHHHHHHHH-HCTTHHHHH----HHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhc-C---CChhHHHHHHHHHHhh-CCHHHHHHH----HHH
Confidence 47899999999999999999 889999999999987532111 1 1112222222222111 011110000 000
Q ss_pred cCCccceeeccCccEEEEEeecccc--hhhhhcC---CeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhh
Q 002197 598 RSGFKELEVSEDCGVIIFEGVYALH--PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQ 672 (954)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~--~~l~~~~---D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~ 672 (954)
... ....+.+|++|..... ..+...+ +..||+++|.+.++.|...|+....+.+.+. +.........
T Consensus 72 -----~l~-~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~--~~~r~~~~~~ 143 (179)
T 3lw7_A 72 -----ELG-TSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISE--LIRRDREELK 143 (179)
T ss_dssp -----HHC-SCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHH--HHHHHHHHHH
T ss_pred -----HHH-hcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHH--HHHHHHhhhc
Confidence 000 1335789999973222 2344443 4899999999999999998864332222221 1111100001
Q ss_pred hhcccccCcccEEEcCCC
Q 002197 673 QHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 673 ~~Iep~~~~ADivI~n~~ 690 (954)
.-+.++...||++|+|+-
T Consensus 144 ~~~~~~~~~ad~vId~~~ 161 (179)
T 3lw7_A 144 LGIGEVIAMADYIITNDS 161 (179)
T ss_dssp HTHHHHHHTCSEEEECCS
T ss_pred cChHhHHHhCCEEEECCC
Confidence 112334567999998864
No 70
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.94 E-value=1e-09 Score=111.79 Aligned_cols=122 Identities=14% Similarity=0.024 Sum_probs=75.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~ 140 (954)
.+.+|+|+|++||||||+|+.|++.+|+.++++|++++.....+.+ ....+.+.+. .|..+............+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~~~~~~~~~~~~~i 84 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESE---RSKLIRDIME---RGDLVPSGIVLELLKEAM 84 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCH---HHHHHHHHHH---TTCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCH---HHHHHHHHHH---cCCcCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999987643211111 1112222222 232211111111111111
Q ss_pred cccccccCCCcEEEEEecccch---hhhhc---CCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 141 GSKVIKGASSGVVIVDGTYALD---ARLRS---LLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll~---~~l~~---~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.. .......+|+||..... ..+.. .+|.+|||++|++++..|...|+.
T Consensus 85 ~~---~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 85 VA---SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp HH---HTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred hc---ccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 00 01234678999875543 12222 579999999999999999988865
No 71
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.91 E-value=1.9e-09 Score=107.30 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=34.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
..|.+|+|+|++||||||+|+.|++.||++++++|.+...
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~ 44 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE 44 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 4577999999999999999999999999999999998664
No 72
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.89 E-value=4.3e-09 Score=104.32 Aligned_cols=149 Identities=13% Similarity=0.132 Sum_probs=80.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~ 141 (954)
|.+|+|+|++||||||+|+.|++.+|+.+++.|.+..... ....+.+....+..+..+....+.... .+-
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--------~~~~~~~~~~~l~~~~~vi~dr~~~~~--~v~ 70 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--------GNEKLFEHFNKLADEDNVIIDRFVYSN--LVY 70 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--------CHHHHHHHHHHHTTCCSEEEESCHHHH--HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--------HHHHHHHHHHHHHhCCCeEEeeeecch--HHH
Confidence 4589999999999999999999999999999999865432 122222333334444333211111100 000
Q ss_pred ccccccCCCcEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhhhccCCCcCcccE
Q 002197 142 SKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQI 221 (954)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~Iep~~~~ADi 221 (954)
... ......+..+....+ .......|.+||+++|+++...|...|.. .... ....+.+...|......+ ..+++
T Consensus 71 ~~~--~~~~~~~~~~~~~~l-~~~~~~~~~~i~l~~~~e~~~~R~~~r~r-~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ 144 (173)
T 3kb2_A 71 AKK--FKDYSILTERQLRFI-EDKIKAKAKVVYLHADPSVIKKRLRVRGD-EYIE-GKDIDSILELYREVMSNA-GLHTY 144 (173)
T ss_dssp TTT--BTTCCCCCHHHHHHH-HHHHTTTEEEEEEECCHHHHHHHHHHHSC-SCCC-HHHHHHHHHHHHHHHHTC-SSCEE
T ss_pred HHH--HHHhhHhhHHHHHHH-hccCCCCCEEEEEeCCHHHHHHHHHhcCC-cchh-hhHHHHHHHHHHHHHhhc-CCCEE
Confidence 000 000000000000000 11112468999999999999999888732 1122 234444444444433222 36899
Q ss_pred EEECC
Q 002197 222 RINNR 226 (954)
Q Consensus 222 II~N~ 226 (954)
+|+++
T Consensus 145 ~id~~ 149 (173)
T 3kb2_A 145 SWDTG 149 (173)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99987
No 73
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.88 E-value=1.5e-09 Score=111.34 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=73.6
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccccc-CCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~-~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
..+|.+|+|+|++||||||+|+.|++.+|+.++++|++++.... .+.+ ..+.+.+.+. .|.............
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~---~~~~i~~~~~---~g~~~~~~~~~~~l~ 85 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQ---YGELIKNCIK---EGQIVPQEITLALLR 85 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCS---CHHHHHHHHH---TTCCCCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCH---HHHHHHHHHH---cCCcCCHHHHHHHHH
Confidence 44678999999999999999999999999999999998764321 1111 1122333322 222111000000011
Q ss_pred ccccccccccCCCcEEEEEecccch------hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 138 NRIGSKVIKGASSGVVIVDGTYALD------ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~ll~------~~l~~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
..+.. .. ....+.+|++|...-. ......+|.+||+++|.++++.|...|+.
T Consensus 86 ~~i~~-~l-~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~ 143 (203)
T 1ukz_A 86 NAISD-NV-KANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGK 143 (203)
T ss_dssp HHHHH-HH-HTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHh-hh-ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccc
Confidence 11100 11 1112467788853211 11222379999999999999999988863
No 74
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.88 E-value=4.5e-09 Score=110.98 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=94.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHc--------CCc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN--------GRR 585 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~--------g~~ 585 (954)
...+.+|+|+|++||||||+++.|++.+|+.++++|++++.........+.+. -+.+.+.+.+..+.. |..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~f~~~~~~~~~ 91 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGV-EEVEALLALLDQHPISFGRSETGDQL 91 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCT-TCHHHHHHHHHHSCCEEEEETTTEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCc-ccHHHHHHHHHhccccccccCCccce
Confidence 34567999999999999999999999999999999999975221000001110 112233333322110 001
Q ss_pred eecc--cccccccc--------------cC--Cc-cceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHH
Q 002197 586 TKVP--IFDLETGA--------------RS--GF-KELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (954)
Q Consensus 586 v~~P--~yD~~~~d--------------r~--~~-~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr 646 (954)
+..- .++..... .. .. ...........+|+||.....+ +...+|.+||++++.+.++.|+
T Consensus 92 i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~-~l~~~d~vi~L~a~~e~~~~R~ 170 (236)
T 1q3t_A 92 VFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV-VLPQAELKIFLVASVDERAERR 170 (236)
T ss_dssp EEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSS-SGGGCSEEEEEECCHHHHHHHH
T ss_pred EeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhh-hccCCCEEEEEECCHHHHHHHH
Confidence 1000 00000000 00 00 0000112345678899876432 3446799999999999999998
Q ss_pred HhcCcccccc--ccch--hhHHhhhcchhhhhcccccCccc-EEEcCC
Q 002197 647 VQRDKSRMGC--FMSQ--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 689 (954)
Q Consensus 647 i~RD~~~rg~--~~~~--~q~~~~v~p~~~~~Iep~~~~AD-ivI~n~ 689 (954)
+.|. ..||. +.+. ..+.....+....++.|....+| ++|+|+
T Consensus 171 ~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 171 YKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp HHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred HHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 6543 22332 2221 12222244555556677666666 888876
No 75
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.87 E-value=3.4e-10 Score=114.36 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=78.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~ 142 (954)
.+|+|+|++||||||+|+.|++.+|++++++|++++..... + .. +.+.. .|.. .+.........
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~--~----~~---~~~~~--~g~~----~~~~~~~~~~~- 66 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR--S----IA---DIFAT--DGEQ----EFRRIEEDVVR- 66 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSS--C----HH---HHHHH--HCHH----HHHHHHHHHHH-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCC--C----HH---HHHHH--hChH----HHHHHHHHHHH-
Confidence 46999999999999999999999999999999987643211 1 00 00000 0000 00000000000
Q ss_pred cccccCCCcEEEEEeccc-chhhhhcC--CCEEEEEEcCHHHHHHHHHHhccCC---ccCHHHHHHhhchhhhhccCCCc
Q 002197 143 KVIKGASSGVVIVDGTYA-LDARLRSL--LDIRVAVVGGVHFSLISKVQYDIGD---SCSLDSLIDSIFPLFRKHIEPDL 216 (954)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l-l~~~l~~~--~D~~I~Vda~~~~rl~Rri~RD~~~---r~~~e~~~~~v~p~~~~~Iep~~ 216 (954)
.... ....|+..|... +.+..++. ++..|||++|.++++.|...|.... ..+....++.+...... .+.
T Consensus 67 ~~~~--~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~---~~~ 141 (184)
T 2iyv_A 67 AALA--DHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAP---LYR 141 (184)
T ss_dssp HHHH--HCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHH---HHH
T ss_pred HHHh--cCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHH---HHh
Confidence 0000 112344445433 32222221 6899999999999999987775321 12334444433221111 113
Q ss_pred CcccEEEECCC
Q 002197 217 HHAQIRINNRF 227 (954)
Q Consensus 217 ~~ADiII~N~~ 227 (954)
..+|++|+|+.
T Consensus 142 ~~~~~~Idt~~ 152 (184)
T 2iyv_A 142 RVATMRVDTNR 152 (184)
T ss_dssp HHCSEEEECSS
T ss_pred ccCCEEEECCC
Confidence 56899999983
No 76
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.86 E-value=1.5e-08 Score=101.47 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=81.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccc--c--cCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV--D--EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~--~--~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
..+.+|+|+|++||||||+++.|+..+|..+++.|++.... . ..+.. +........+..+ ..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~-----------~~- 71 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEP--LNDDDRKPWLQAL-----------ND- 71 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCC--CCHHHHHHHHHHH-----------HH-
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcC--CCccccccHHHHH-----------HH-
Confidence 34679999999999999999999999999999999975421 0 01110 1101111111100 00
Q ss_pred hhccccccccccCCCcEEEEEecccch---hhhhcC-CC-EEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhhh
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL-LD-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~~-~D-~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~ 210 (954)
.. .... .....+|++..++.. ..+... .| ..||+++|.++++.|...|+.... . ...++.++..
T Consensus 72 ---~~-~~~~--~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~-~-~~~~~~~~~~--- 140 (175)
T 1knq_A 72 ---AA-FAMQ--RTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF-K-TQMLVTQFET--- 140 (175)
T ss_dssp ---HH-HHHH--HHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC-C-HHHHHHHHHH---
T ss_pred ---HH-HHHH--hcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCC-c-hHHHHHHHHh---
Confidence 00 0000 012356677555443 233333 36 799999999999999988863321 2 2233322222
Q ss_pred ccCC-CcCcccEEEECC
Q 002197 211 HIEP-DLHHAQIRINNR 226 (954)
Q Consensus 211 ~Iep-~~~~ADiII~N~ 226 (954)
+-.+ +...||++|+|+
T Consensus 141 ~~~~~~~~~~~~~Id~~ 157 (175)
T 1knq_A 141 LQEPGADETDVLVVDID 157 (175)
T ss_dssp CCCCCTTCTTEEEEECS
T ss_pred hhCcccCCCCeEEEeCC
Confidence 2223 456789999998
No 77
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.85 E-value=3.3e-09 Score=112.50 Aligned_cols=169 Identities=14% Similarity=0.149 Sum_probs=92.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhh--ccccCCCCCcccHHHHHHHHHHHHc-------CCce
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIRN-------GRRT 586 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~--~~~n~d~p~t~D~~lL~~~L~~L~~-------g~~v 586 (954)
.|++|+|.||+||||||+|+.|++.+|..+++.|++|+.... ...+. ..-|.+.+.+.+..+.- +..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi---~~~d~~~~~~~~~~~~~~~~~~~~~~~v 84 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGA---DLTDPAAIEKAAADAEIGVGSDPDVDAA 84 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTC---CTTCHHHHHHHHHTCCEEECCCTTSCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCC---CchhhHHHHHHHHhCCEEEeecCCCcEE
Confidence 578999999999999999999999999999999999986321 11111 12233334443333210 0011
Q ss_pred ecccccccccccCCc-------------------cceeeccCc-cEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHH
Q 002197 587 KVPIFDLETGARSGF-------------------KELEVSEDC-GVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (954)
Q Consensus 587 ~~P~yD~~~~dr~~~-------------------~~~~~~~~~-dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr 646 (954)
.+.--|....-|.+. ......... .-+|+||-.++.--+ +..+++||++++.+.|..|+
T Consensus 85 ~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~-pda~lkifl~A~~e~Ra~Rr 163 (233)
T 3r20_A 85 FLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVL-PDADVKIFLTASAEERARRR 163 (233)
T ss_dssp EETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCC-TTCSEEEEEECCHHHHHHHH
T ss_pred EECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEc-CCCCEEEEEECCHHHHHHHH
Confidence 111101100001100 000001122 568889987654222 22689999999999999999
Q ss_pred HhcCccccccccc--h--hhHHhhhcchhhhhcccccCccc-EEEcCC
Q 002197 647 VQRDKSRMGCFMS--Q--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 689 (954)
Q Consensus 647 i~RD~~~rg~~~~--~--~q~~~~v~p~~~~~Iep~~~~AD-ivI~n~ 689 (954)
..+.. ..|.... . .+....-......++.|.+..+| ++|+++
T Consensus 164 ~~~l~-~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs 210 (233)
T 3r20_A 164 NAQNV-ANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTS 210 (233)
T ss_dssp HHHHH-HTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECT
T ss_pred HHHHH-hccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECC
Confidence 86432 2232222 1 11222222233456778776666 777664
No 78
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.84 E-value=1.9e-09 Score=107.40 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=35.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~ 100 (954)
|.+|+|+|++||||||+|+.|++.+|+.++++|.+++..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~ 40 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT 40 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence 457999999999999999999999999999999986643
No 79
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.84 E-value=1.4e-08 Score=104.32 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=82.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (954)
.+.+|+|+|++||||||+|+.|++.+|+.+++.|+++..........+.+ +........+..+...
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~--~~~~~~~~~~~~l~~~------------ 82 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIP--LTDDDRWPWLAAIGER------------ 82 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCC--CCHHHHHHHHHHHHHH------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCC--CCchhhHHHHHHHHHH------------
Confidence 46789999999999999999999999999999999986422111111110 1111111122221100
Q ss_pred cccCCccceeeccCccEEEEEeecccc---hhhhhcC---CeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcc
Q 002197 596 GARSGFKELEVSEDCGVIIFEGVYALH---PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFP 669 (954)
Q Consensus 596 ~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~l~~~~---D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p 669 (954)
......+|+++.+... ..+.... +..||++++.++.+.|...|+..... . .... .
T Consensus 83 -----------~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~----~-~~~~---~ 143 (202)
T 3t61_A 83 -----------LASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP----S-SLLQ---T 143 (202)
T ss_dssp -----------HTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC----H-HHHH---H
T ss_pred -----------HhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC----H-HHHH---H
Confidence 0112345666655432 2233333 58999999999999998887532111 1 1111 1
Q ss_pred hhhhhcccccCcccEEEcCC
Q 002197 670 MFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 670 ~~~~~Iep~~~~ADivI~n~ 689 (954)
.+..+-.+....++++|+++
T Consensus 144 ~~~~~~~~~~~~~~~~Id~~ 163 (202)
T 3t61_A 144 QLETLEDPRGEVRTVAVDVA 163 (202)
T ss_dssp HHHHCCCCTTSTTEEEEESS
T ss_pred HHHhcCCCCCCCCeEEEeCC
Confidence 22333234455689999887
No 80
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.83 E-value=4.6e-09 Score=104.12 Aligned_cols=148 Identities=8% Similarity=0.064 Sum_probs=82.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~d 597 (954)
.+|+|+|++||||||+|+.|++.+|+.+++.|.|..... ....+.+....+..|..+-.-.+-.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~------------~~~~~~~~~~~l~~~~~vi~dr~~~~--- 66 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS------------GNEKLFEHFNKLADEDNVIIDRFVYS--- 66 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT------------CHHHHHHHHHHHTTCCSEEEESCHHH---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh------------HHHHHHHHHHHHHhCCCeEEeeeecc---
Confidence 478999999999999999999999999999998876421 12333334445555554422211110
Q ss_pred cCCccceeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhhhhccc
Q 002197 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 677 (954)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~Iep 677 (954)
...+... ...... +...+...........|..||++++.+..+.|...|. +......+...+...|+.....
T Consensus 67 ~~v~~~~--~~~~~~-~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~-----r~~~~~~~~~~~~~~~~~~~~~ 138 (173)
T 3kb2_A 67 NLVYAKK--FKDYSI-LTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG-----DEYIEGKDIDSILELYREVMSN 138 (173)
T ss_dssp HHHHTTT--BTTCCC-CCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS-----CSCCCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHH--HHHhhH-hhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC-----CcchhhhHHHHHHHHHHHHHhh
Confidence 0000000 000000 0000100001111236789999999999999987762 1222223444555566655433
Q ss_pred ccCcccEEEcCC
Q 002197 678 HLVHAHLKIRND 689 (954)
Q Consensus 678 ~~~~ADivI~n~ 689 (954)
+ ..++++|+++
T Consensus 139 ~-~~~~~~id~~ 149 (173)
T 3kb2_A 139 A-GLHTYSWDTG 149 (173)
T ss_dssp C-SSCEEEEETT
T ss_pred c-CCCEEEEECC
Confidence 3 3588888775
No 81
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.83 E-value=8e-09 Score=110.54 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=84.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhc--cccCCCCCcccHHHHHHHHHHHH--cCC--ceecc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIR--NGR--RTKVP 589 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~--~~n~d~p~t~D~~lL~~~L~~L~--~g~--~v~~P 589 (954)
...+|+|+||+||||||+++.|++.||...++.|.+|+..... ..+.+..+......+...+.... .+. .+.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 4568999999999999999999999999999999999542100 01111111111222221110000 000 00000
Q ss_pred cccccccccCCc------------------cc-eeeccCccEEEEEeecccchhhhhcCCeEEEEEcChhHHHHHHHhcC
Q 002197 590 IFDLETGARSGF------------------KE-LEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 590 ~yD~~~~dr~~~------------------~~-~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
..+....-+... .. ........-+|+||-....- +.+..|++||++++.+.|..|+..+.
T Consensus 106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~l 184 (252)
T 4e22_A 106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQL 184 (252)
T ss_dssp TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHHH
Confidence 000000000000 00 00012234578899776542 22346899999999999999987632
Q ss_pred ccccccccch----hhHHhhhcchhhhhcccccCccc-EEEcCC
Q 002197 651 KSRMGCFMSQ----NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 689 (954)
Q Consensus 651 ~~~rg~~~~~----~q~~~~v~p~~~~~Iep~~~~AD-ivI~n~ 689 (954)
. .+|..... .++...........+.|....|| ++|+++
T Consensus 185 ~-~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts 227 (252)
T 4e22_A 185 Q-ERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDST 227 (252)
T ss_dssp H-HHTCCCCHHHHHHHHC------------CCCCCTTEEEEECS
T ss_pred H-hcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECc
Confidence 1 12222221 11111222233455678777777 888776
No 82
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.83 E-value=5.5e-09 Score=105.58 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=74.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (954)
.|.+|+|.|++||||||+|+.|++.+|+.++++|++.+..... +++.-...+.+.+ ..|.....+......
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~------~~~~~~~~~~~~~---~~g~~~~~~~~~~~l 72 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKN------PDSQYGELIEKYI---KEGKIVPVEITISLL 72 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHC------TTSTTHHHHHHHH---HTTCCCCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhc------cCChHHHHHHHHH---HCCCcCCHHHHHHHH
Confidence 3678999999999999999999999999999999998642110 0111111222222 123221111100000
Q ss_pred cccCCccceeeccCccEEEEEeecccch---hhhh------cCCeEEEEEcChhHHHHHHHhcCc
Q 002197 596 GARSGFKELEVSEDCGVIIFEGVYALHP---EIRK------SLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 596 ~dr~~~~~~~~~~~~dVVIvEG~~~~~~---~l~~------~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
..... ...........+|++|...... .+.. ..|..||+++|.+.++.|...|+.
T Consensus 73 ~~~~~-~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 73 KREMD-QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHHH-HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 00000 0000012356889999876432 2222 357899999999999999988863
No 83
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.82 E-value=8.5e-10 Score=109.53 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=64.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
+|+|+|++||||||+|+.|++.+|+.++++|++....... ... +.+.. .+.. .++.. ......
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~------~~~---~~~~~--~~~~----~~~~~-~~~~l~- 64 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGL------SIP---QIFEK--KGEA----YFRKL-EFEVLK- 64 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS------CHH---HHHHH--SCHH----HHHHH-HHHHHH-
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCC------CHH---HHHHH--hChH----HHHHH-HHHHHH-
Confidence 6999999999999999999999999999999986543210 000 10000 0000 00000 000000
Q ss_pred ccccCCCcEEEEEe--cccchhhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 144 VIKGASSGVVIVDG--TYALDARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 144 ~~~~~~~~vVIvEG--~~ll~~~l~--~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
.. .....+||.+| +.+...... ..+|.+|||++|.++++.|...|.
T Consensus 65 ~l-~~~~~~Vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 65 DL-SEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp HH-TTSSSEEEECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT
T ss_pred HH-hccCCeEEECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC
Confidence 00 01234666644 344432221 227999999999999999987653
No 84
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.81 E-value=9.7e-09 Score=105.36 Aligned_cols=122 Identities=20% Similarity=0.140 Sum_probs=71.4
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
...+++|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+. .|..+...........
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~---~g~~i~~~~~---~g~~~~~~~~~~~~~~ 90 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTK---LGVEAKRYLD---AGDLVPSDLTNELVDD 90 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCH---HHHHHHHHHH---HTCCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCCh---HHHHHHHHHH---cCCcccHHHHHHHHHH
Confidence 445678999999999999999999999999999999976642111111 1112222221 1221111000111111
Q ss_pred cccccccccCCCcEEEEEeccc-ch------hhhh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 139 RIGSKVIKGASSGVVIVDGTYA-LD------ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l-l~------~~l~---~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
+... ......+|++|... .. ..+. ..+|.+||+++|+++++.|...|.
T Consensus 91 ~~~~----~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 148 (201)
T 2cdn_A 91 RLNN----PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG 148 (201)
T ss_dssp HTTS----GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred HHhc----ccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 1111 01123478898432 11 1122 247899999999999999998885
No 85
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=9.4e-09 Score=105.60 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=35.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
++.+|+|+|++||||||+++.|++.+|+.++++|++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence 456899999999999999999999999999999997543
No 86
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.80 E-value=1.7e-08 Score=107.37 Aligned_cols=128 Identities=14% Similarity=-0.075 Sum_probs=78.5
Q ss_pred HHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 002197 53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (954)
Q Consensus 53 ~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~ 132 (954)
........++++|+|+|++||||||+|+.|++.+|+.++++|+..+.....+.+ ....+.+.+. .|..+....+
T Consensus 20 ~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~---~g~~i~~~~~---~g~~~~~~~~ 93 (243)
T 3tlx_A 20 RRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE---LGLKIKNIIN---EGKLVDDQMV 93 (243)
T ss_dssp HHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH---HHHHHHHHHH---TTCCCCHHHH
T ss_pred HHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch---HHHHHHHHHh---cCCCCcHHHH
Confidence 333444667899999999999999999999999999999999987653332211 1122222222 2322211111
Q ss_pred hhhhhccccccccccCCCcEEEEEecccch---hhhh-------cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~-------~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
......... ......-+|++|..... ..+. ..+|.+|++++|+++.+.|...|.
T Consensus 94 ~~~~~~~l~----~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 94 LSLVDEKLK----TPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp HHHHHHHTT----SGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHHHHHh----cccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 111111111 11123468899843222 1111 347999999999999999999885
No 87
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.80 E-value=2.2e-09 Score=108.33 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=34.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
+..|.|+|++||||||+|+.|++.+|+.++++|.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 46789999999999999999999999999999998654
No 88
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.78 E-value=6.5e-09 Score=107.65 Aligned_cols=116 Identities=14% Similarity=0.006 Sum_probs=69.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
.|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ -...+.+.+. .+..+..............
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~---~~~~~~~~~~---~g~~~~~~~~~~~~~~~l~-- 73 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTE---LGLKAKSFMD---QGNLVPDEVTIGIVHERLS-- 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCH---HHHHHHHHHH---HTCCCCHHHHHHHHHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCH---HHHHHHHHHH---CCCCCCHHHHHHHHHHHHh--
Confidence 5899999999999999999999999999999987754332211 1112222221 1221111111111111111
Q ss_pred ccccCCCcEEEEEecccch---hhhh-------cCCCEEEEEEcCHHHHHHHHHHh
Q 002197 144 VIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQY 189 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~---~~l~-------~~~D~~I~Vda~~~~rl~Rri~R 189 (954)
.......+|++|..... ..+. ..+|.+||+++|.++++.|...|
T Consensus 74 --~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 74 --KDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp --SGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred --cccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 11113457888853322 1122 23799999999999999999988
No 89
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.78 E-value=1.9e-08 Score=103.42 Aligned_cols=141 Identities=17% Similarity=0.079 Sum_probs=78.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccc-----ccCCCCCcccHHHHHHHHHhhhcCCccccccchh
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV-----DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~-----~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~ 134 (954)
.+..+|+|+|++||||||+++.|+..+|..+++.|++.... ..+..+.. ......+..+ ..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~-----------~~ 92 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTD---EDRWPWLRSL-----------AE 92 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCH---HHHHHHHHHH-----------HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCC---cccccHHHHH-----------HH
Confidence 34578999999999999999999999999999999975421 01111111 1111111000 00
Q ss_pred hhhccccccccccCCCcEEEEEecccchh---hhhcCC--CEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhh
Q 002197 135 QQKNRIGSKVIKGASSGVVIVDGTYALDA---RLRSLL--DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (954)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~ll~~---~l~~~~--D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~ 209 (954)
.... .. .....+|++...+... .+.... ...||++++.++++.|...|..... . ...++. .+.
T Consensus 93 ~~~~-----~~--~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~-~-~~~l~~---~~~ 160 (200)
T 4eun_A 93 WMDA-----RA--DAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFM-P-ASLLQS---QLA 160 (200)
T ss_dssp HHHH-----HH--HTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSS-C-GGGHHH---HHH
T ss_pred HHHH-----HH--hcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCC-C-HHHHHH---HHH
Confidence 0000 00 1112345565554442 222221 3779999999999999877764322 1 112222 223
Q ss_pred hccCCCcCcccEEEECC
Q 002197 210 KHIEPDLHHAQIRINNR 226 (954)
Q Consensus 210 ~~Iep~~~~ADiII~N~ 226 (954)
.+..++...||++|+|+
T Consensus 161 ~~~~~~~~~~~~~Id~~ 177 (200)
T 4eun_A 161 TLEALEPDESGIVLDLR 177 (200)
T ss_dssp HCCCCCTTSCEEEEETT
T ss_pred HhCCCCCCCCeEEEECC
Confidence 32334456699999997
No 90
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.74 E-value=3e-08 Score=100.57 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=74.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
.++.+|+|+|++||||||+|+.|++.+|+.++++|++++.....+.+ ....+.+.+. .|..+............
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~~~~~~~~~~~~~ 80 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSA---RGKKLSEIME---KGQLVPLETVLDMLRDA 80 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCH---HHHHHHHHHH---TTCCCCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCCh---HHHHHHHHHH---cCCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999987653322211 1122333222 23322111110011111
Q ss_pred ccccccccCCCcEEEEEecccchh------hhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 140 IGSKVIKGASSGVVIVDGTYALDA------RLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~~------~l~~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
+.. .......+|+||...... ......|.+||+++|++++..|...|..
T Consensus 81 i~~---~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 135 (196)
T 2c95_A 81 MVA---KVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE 135 (196)
T ss_dssp HHH---HTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHT
T ss_pred HHh---ccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCC
Confidence 110 112345789998432211 1124579999999999999999888863
No 91
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.74 E-value=7.6e-09 Score=107.27 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=69.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
.|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ -...+.+.+ ..|..+...............
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~---~~~~~~~~~---~~g~~~~~~~~~~~~~~~l~~- 74 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETP---LGLEAKSYI---DKGELVPDEVTIGIVKERLGK- 74 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCH---HHHHHHHHH---TTTCCCCHHHHHHHHHHHHTS-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH---HHHHHHHHH---HCCCCCCHHHHHHHHHHHHhc-
Confidence 5899999999999999999999999999999987753332211 111111111 112111111111111111111
Q ss_pred ccccCCCcEEEEEecccch---hhhh-------cCCCEEEEEEcCHHHHHHHHHHh
Q 002197 144 VIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQY 189 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~---~~l~-------~~~D~~I~Vda~~~~rl~Rri~R 189 (954)
......+|++|..... ..+. ..+|.+|++++|.++++.|...|
T Consensus 75 ---~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 75 ---DDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp ---GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred ---ccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 1113457888843222 1121 24799999999999999999998
No 92
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.73 E-value=8.9e-09 Score=106.87 Aligned_cols=38 Identities=18% Similarity=0.497 Sum_probs=35.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
|++|+|+|++||||||+++.|++.+|+.++++|++++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 56899999999999999999999999999999999874
No 93
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.73 E-value=2.2e-08 Score=101.62 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=35.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHH-hCCeEEeccccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASV-IGCTLISMENYRVG 99 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~-Lg~~VIs~Dd~y~~ 99 (954)
.++.+|+|+|++||||||+|+.|++. +|+.++++|++.+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 34578999999999999999999998 79999999997654
No 94
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.72 E-value=2.3e-08 Score=100.82 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=70.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (954)
.+.+|+|+|++||||||+|+.|++.+|+.++++|++.+..... ++-....+.+.+ ..|... | +...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~-------~~~~~~~i~~~~---~~g~~~--~--~~~~ 70 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQS-------GSKDGEMIATMI---KNGEIV--P--SIVT 70 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT-------TCTTHHHHHHHH---HTTCCC--C--HHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhc-------CCHHHHHHHHHH---HCCCCC--C--HHHH
Confidence 4679999999999999999999999999999999987642110 000111111111 112110 0 0000
Q ss_pred cccCCccceeeccCccEEEEEeecccc---hhh----hh--cCCeEEEEEcChhHHHHHHHhcCc
Q 002197 596 GARSGFKELEVSEDCGVIIFEGVYALH---PEI----RK--SLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 596 ~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~l----~~--~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
..... .... ......+|++|..... ..+ .. ..|..||+++|.+.++.|...|+.
T Consensus 71 ~~~l~-~~i~-~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 71 VKLLK-NAID-ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp HHHHH-HHHH-TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred HHHHH-HHHH-hcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 00000 0000 0134678899854322 112 22 468899999999999999888853
No 95
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=2e-08 Score=103.18 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=35.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+..+|+|.|++||||||+++.|++.+|..++++|++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence 345889999999999999999999999999999998754
No 96
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.65 E-value=4.5e-08 Score=98.67 Aligned_cols=115 Identities=21% Similarity=0.054 Sum_probs=68.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~ 140 (954)
+..+|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+. .|.... +.......
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~~----~~~~~~~~ 72 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTP---LGERVRPIME---RGDLVP----DDLILELI 72 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCH---HHHHHHHHHH---TTCCCC----HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCCh---HHHHHHHHHH---cCCcCC----HHHHHHHH
Confidence 3578999999999999999999999999999999876532111111 1112222222 122111 11111111
Q ss_pred cccccccCCCcEEEEEecccchh---h----hhc---CCCEEEEEEcCHHHHHHHHHHhc
Q 002197 141 GSKVIKGASSGVVIVDGTYALDA---R----LRS---LLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll~~---~----l~~---~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
.. .. .. . +|++|...... . +.. .+|.+||+++|+++++.|...|.
T Consensus 73 ~~-~l--~~-~-~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 73 RE-EL--AE-R-VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp HH-HC--CS-E-EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HH-Hh--cC-C-EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 11 01 11 1 78888543221 1 111 36899999999999999988885
No 97
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.63 E-value=2.5e-09 Score=106.65 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=34.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
+.+|+|+|++||||||+++.|+..+|+.+++.|.+...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~ 41 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK 41 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHH
Confidence 35799999999999999999999999999999987553
No 98
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.63 E-value=3.7e-08 Score=101.99 Aligned_cols=163 Identities=15% Similarity=0.044 Sum_probs=79.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHH----HHhhhcCCccccccchhhhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQN----LQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~----L~~l~~g~~i~~p~~d~~~~ 137 (954)
.++|+|+|++||||||+++.||+.||++++| +++++...........+++.+.+. +..+..+ .+.....+....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPA-GGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhcc-ccccccccHHHH
Confidence 3689999999999999999999999999999 666543222111111111111111 1000000 000000000000
Q ss_pred ccccccccc-c--CCCcEEEEEecccchhhhhcC-CCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHh----hchhhh
Q 002197 138 NRIGSKVIK-G--ASSGVVIVDGTYALDARLRSL-LDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDS----IFPLFR 209 (954)
Q Consensus 138 ~~~~~~~~~-~--~~~~vVIvEG~~ll~~~l~~~-~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~----v~p~~~ 209 (954)
......... . .... +|++|-..-. -+.+. -.++|||++|.+.+..|+..|.......+...+.. -.+.|+
T Consensus 84 ~~~~~~i~~la~~~~~~-~Vi~Gr~g~~-vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~ 161 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKES-FVIVGRCAEE-ILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHN 161 (201)
T ss_dssp HHHHHHHHHHHHTSCCC-EEEESTTHHH-HTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCC-EEEEECCcch-hcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000001 1 1223 5555543221 11222 35899999999999999988764433222222221 123344
Q ss_pred hc--cCC-CcCcccEEEECCCC
Q 002197 210 KH--IEP-DLHHAQIRINNRFV 228 (954)
Q Consensus 210 ~~--Iep-~~~~ADiII~N~~~ 228 (954)
.| +.| ....+|++|+++..
T Consensus 162 ~~~~~~~~~~~~~dl~Idt~~l 183 (201)
T 3fdi_A 162 FYCESKWGDSRTYDICIKIGKV 183 (201)
T ss_dssp HHCSSCTTBGGGCSEEEEESSS
T ss_pred HHhCCCCCCcccCCEEEECCCC
Confidence 33 233 36678999998843
No 99
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.62 E-value=7.1e-08 Score=97.51 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=81.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
.++.+|.|+|++||||||+|+.|++.+|+.+++.|.+...+...... .+.+.. ..+... .+.... ..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~--~~~~~~-~~~~~~---------~~~~~~-~~ 69 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGW--SDREWS-RRVGAT---------AIMMLY-HT 69 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCC--CSHHHH-HHHHHH---------HHHHHH-HH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCc--cchHHH-HHhhHH---------HHHHHH-HH
Confidence 45689999999999999999999999999999999875432211000 011111 001100 000000 00
Q ss_pred ccccccccCCCcEEEEEecccchh---h---hh---cCCCEEEEEEcCHHHHHHHHHHhccC-Ccc--C-HHHHHH--hh
Q 002197 140 IGSKVIKGASSGVVIVDGTYALDA---R---LR---SLLDIRVAVVGGVHFSLISKVQYDIG-DSC--S-LDSLID--SI 204 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~~---~---l~---~~~D~~I~Vda~~~~rl~Rri~RD~~-~r~--~-~e~~~~--~v 204 (954)
. ... ......+|+++.+.... . +. ...+..||+++|+++.+.|...|... .+. . ...+.. +.
T Consensus 70 ~-~~~--l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~ 146 (193)
T 2rhm_A 70 A-ATI--LQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLEL 146 (193)
T ss_dssp H-HHH--HHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHH
T ss_pred H-HHH--HhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhh
Confidence 0 000 01224678888873211 1 22 22458999999999999998887642 121 1 111111 11
Q ss_pred chhhhhccCCC-cCcccEEEECCC
Q 002197 205 FPLFRKHIEPD-LHHAQIRINNRF 227 (954)
Q Consensus 205 ~p~~~~~Iep~-~~~ADiII~N~~ 227 (954)
...+.. .+|. ...++++|+++.
T Consensus 147 ~~~~~~-~~~~~~~~~~~~Idt~~ 169 (193)
T 2rhm_A 147 VRSRGD-IPPLPLGGPLLTVDTTF 169 (193)
T ss_dssp HHHSCC-CCCCCCCSCEEEEECSS
T ss_pred HHHHhc-CCCccCCCCEEEEeCCC
Confidence 122333 2333 336889998884
No 100
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.62 E-value=9.4e-08 Score=101.66 Aligned_cols=125 Identities=12% Similarity=-0.066 Sum_probs=75.6
Q ss_pred HHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccc
Q 002197 511 LENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (954)
Q Consensus 511 ~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~ 590 (954)
.....+|++|+|+||+||||||+|+.|++.+|+.++|+|+..+.... +++- ...+.-..+..|..+....
T Consensus 23 ~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~-------~~~~---~g~~i~~~~~~g~~~~~~~ 92 (243)
T 3tlx_A 23 ACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAE-------KKTE---LGLKIKNIINEGKLVDDQM 92 (243)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTT-------SSSH---HHHHHHHHHHTTCCCCHHH
T ss_pred HhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHh-------ccch---HHHHHHHHHhcCCCCcHHH
Confidence 33456789999999999999999999999999999999999875211 1111 1111222223333222111
Q ss_pred ccccccccCCccceeeccCccEEEEEeecccch---hhh-------hcCCeEEEEEcChhHHHHHHHhcC
Q 002197 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 591 yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
.......+.. ......-+|++|...... .+. ...|..|++++|.++.+.|...|.
T Consensus 93 ~~~~~~~~l~-----~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 93 VLSLVDEKLK-----TPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp HHHHHHHHTT-----SGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHHHHHHh-----cccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 1111111110 011235678898433221 121 237899999999999999998875
No 101
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.62 E-value=2.7e-08 Score=101.18 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=73.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (954)
.+.+|+|+|++||||||+|+.|++.+|+.++++|++++..... ++-....+.+.+ ..|..+.. ...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~-------~~~~~~~i~~~~---~~g~~~~~----~~~ 76 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELAS-------ESERSKLIRDIM---ERGDLVPS----GIV 76 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH-------TCHHHHHHHHHH---HTTCCCCH----HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHh-------CCHHHHHHHHHH---HcCCcCCH----HHH
Confidence 3578999999999999999999999999999999998753210 000011111111 12321110 000
Q ss_pred cccCCccce-eeccCccEEEEEeecccc---hhhhh---cCCeEEEEEcChhHHHHHHHhcCc
Q 002197 596 GARSGFKEL-EVSEDCGVIIFEGVYALH---PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 596 ~dr~~~~~~-~~~~~~dVVIvEG~~~~~---~~l~~---~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
+.... ..+ ........+|+||..... ..+.. ..|..||+++|.+.++.|...|+.
T Consensus 77 ~~~~~-~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 77 LELLK-EAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp HHHHH-HHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred HHHHH-HHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 00000 000 001235688999975542 12333 578999999999999999888864
No 102
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.60 E-value=9.2e-08 Score=96.59 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=30.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g~~VIs~Dd 95 (954)
+|+|+|++||||||+|+.|++.+ |+.++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999999999999999998 999999874
No 103
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.60 E-value=2.5e-08 Score=98.86 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=33.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+|+|+|++||||||+|+.|++.+|+.++++|++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~ 37 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQK 37 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHH
Confidence 689999999999999999999999999999999764
No 104
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=98.60 E-value=1.2e-07 Score=100.57 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=102.9
Q ss_pred hcccccccCCCCCCCCCcCCcc-eEEEEeeCCEEEEEeeccccccCcccccceeEEe--------------------hhh
Q 002197 729 NFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLREGNFIIQPKVDFDI--------------------SIS 787 (954)
Q Consensus 729 ~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v--------------------~~~ 787 (954)
...|+||..| ++.++..+ |||||..+| +++|.|-..+.-.-+++-+ ++ +..
T Consensus 53 ~q~n~YfDTp----d~~L~~~~~aLRiR~~~~---~tlK~p~~~g~~~~~~ey~-e~~~~~~~~~~~~~~~~~~~~~~~~ 124 (234)
T 3bhd_A 53 TFRDTYYDTP----ELSLMQADHWLRRREDSG---WELKCPGAAGVLGPHTEYK-ELTAEPTIVAQLCKVLRADGLGAGD 124 (234)
T ss_dssp EEEEEEEECT----TCHHHHTTCEEEEETTTE---EEEEEESSBTTBCTTSEEE-EECSHHHHHHHHHHHHTC---CCSS
T ss_pred eEEEEEeeCC----ChHHHhCCcEEEEECCCC---eEEecCCccCccCCcceec-cccCccchhhhhhhhhcCCccchhH
Confidence 3679999888 77777766 999999874 7788886655322233333 22 135
Q ss_pred HHHHHHHhCceeeeeeeeeeEEeec--------C-cEEEEEecccCCCCceEEEe---------cccHHHHHHHHhhcCC
Q 002197 788 TVAGLLNLGYQAVAYIEASAFIYQD--------G-KILIEVDHLQDAPSPYLQIK---------GVDKEAVAAAGSTLKL 849 (954)
Q Consensus 788 ~~~~l~~lg~~~~~~~~~~~~~~~~--------~-~~~~~~d~~~~~~~~~~~~~---------~~~~~~v~~~~~~l~~ 849 (954)
+...|..+||+++..+++.|++|.- + +++|.+|.++ +|.+|.||- ...+..+.+++++|||
T Consensus 125 ~~~~L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl 203 (234)
T 3bhd_A 125 VAAVLGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGV 203 (234)
T ss_dssp HHHHHHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCC
Confidence 6677888999999999999999988 7 9999999999 997799992 2567899999999999
Q ss_pred CCCccchhHHHHHHhhcc
Q 002197 850 DGSYTTKSYLQIILEKLP 867 (954)
Q Consensus 850 ~~~~~~~syle~~~~~~~ 867 (954)
+.....++|++.+++.+.
T Consensus 204 ~~~~~~~~k~~~~l~~~~ 221 (234)
T 3bhd_A 204 PAQETAPAKLIVYLQRFR 221 (234)
T ss_dssp CTTCCCCCHHHHHHHHHC
T ss_pred CccccchHHHHHHHHHhC
Confidence 998999999998776543
No 105
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.60 E-value=9.8e-08 Score=96.80 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=28.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g~~VIs~Dd 95 (954)
+|+|+|++||||||+|+.|++.+ |+.++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 69999999999999999999999 999987754
No 106
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.59 E-value=2.1e-07 Score=99.97 Aligned_cols=137 Identities=17% Similarity=0.176 Sum_probs=81.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHH---hCCeEE--eccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchh
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASV---IGCTLI--SMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~---Lg~~VI--s~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~ 134 (954)
.+|.+|.|+|++||||||+|+.|++. +|..++ +.|.+...+..+ .......+......
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~---~~~~e~~~~~~~~~-------------- 64 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVW---KEKYEEFIKKSTYR-------------- 64 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSC---CGGGHHHHHHHHHH--------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhh---hHHHHHHHHHHHHH--------------
Confidence 35789999999999999999999997 688777 878775433221 10011111111000
Q ss_pred hhhccccccccccCCCcEEEEEecccchh---hhhc------CCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhc
Q 002197 135 QQKNRIGSKVIKGASSGVVIVDGTYALDA---RLRS------LLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIF 205 (954)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~ll~~---~l~~------~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~ 205 (954)
.+.. . ... ..+|+++...... .+.. ..+..||+++|.++++.|...|.. ..+ .+.++.+
T Consensus 65 ----~i~~-~--l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~--~~~-~~~l~~~- 132 (260)
T 3a4m_A 65 ----LIDS-A--LKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE--KIP-NEVIKKM- 132 (260)
T ss_dssp ----HHHH-H--HTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC--SSC-HHHHHHH-
T ss_pred ----HHHH-H--hhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC--CCC-HHHHHHH-
Confidence 0000 0 112 5788898665542 2222 237899999999999999888752 112 2333333
Q ss_pred hhhhhccCCCc----CcccEEEECCC
Q 002197 206 PLFRKHIEPDL----HHAQIRINNRF 227 (954)
Q Consensus 206 p~~~~~Iep~~----~~ADiII~N~~ 227 (954)
+..|-+|.. ..++++|+++.
T Consensus 133 --~~~~e~~~~~~~~~~~~~~Id~~~ 156 (260)
T 3a4m_A 133 --YEKFDEPGKKYKWDEPFLIIDTTK 156 (260)
T ss_dssp --HHHCCCTTSSCGGGCCSEEEETTS
T ss_pred --HHHhcCccccCCCCCCEEEEeCCC
Confidence 333334432 35889998874
No 107
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.58 E-value=9.8e-08 Score=97.76 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=69.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (954)
.+++.+|+|+|++||||||+|+.|++.+|+.++++|++++...... ++..-+.+.+.+ ..|... | +.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~------~~~~~~~i~~~~---~~g~~~--~--~~ 78 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRA------GSQYGELIKNCI---KEGQIV--P--QE 78 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHST------TCSCHHHHHHHH---HTTCCC--C--HH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhcc------CCHHHHHHHHHH---HcCCcC--C--HH
Confidence 3467899999999999999999999999999999999877421100 000011111111 122211 0 00
Q ss_pred cccccCCccce--eeccCccEEEEEeecccc--h-h---hhhcCCeEEEEEcChhHHHHHHHhcC
Q 002197 594 ETGARSGFKEL--EVSEDCGVIIFEGVYALH--P-E---IRKSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 594 ~~~dr~~~~~~--~~~~~~dVVIvEG~~~~~--~-~---l~~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
..+.... ..+ ......+.+|++|..... + . .....|..||+++|.+.++.|...|+
T Consensus 79 ~~~~~l~-~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 79 ITLALLR-NAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHHHHHH-HHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence 0000000 000 001112466788753211 1 1 11236899999999999999988875
No 108
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.58 E-value=2.4e-08 Score=100.77 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=34.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.+|+|+|++||||||+|+.|++.+|+.++++|++++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~ 39 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ 39 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHH
Confidence 3589999999999999999999999999999999764
No 109
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.57 E-value=3.6e-08 Score=99.36 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=34.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+..|.|.|++||||||+|+.|++.+|+.++++|++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 45788999999999999999999999999999999764
No 110
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.56 E-value=1.6e-08 Score=101.40 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=34.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~ 99 (954)
|.+|.|+|++||||||+|+.|++.+|+.++++|.++..
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~ 41 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ 41 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHH
Confidence 44799999999999999999999999999999998653
No 111
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.52 E-value=4.4e-07 Score=93.16 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=35.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
..+.+|+|.|++||||||+++.|+..+|..+++.|++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~ 66 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSP 66 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccH
Confidence 3567899999999999999999999999999999998754
No 112
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Probab=98.50 E-value=2e-07 Score=92.50 Aligned_cols=94 Identities=9% Similarity=0.106 Sum_probs=70.0
Q ss_pred cccccceeccccCCCCccccc-ccCCceeEeeeCCeEEEEEcceeccCCCccccceeEEEeeh---hHHHHHHhcCCcee
Q 002197 257 EAQTDNFIEMYLRPPSATEEA-RINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVV 332 (954)
Q Consensus 257 ~~e~D~Y~~~p~Rd~~~~dea-l~~~~lRiR~~~~~~~ltyKgp~i~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~ 332 (954)
....+.|++.+ ++++ + |||..++++.||||||. + ++|.|+|..| .+..+|..+ ..
T Consensus 23 ~~i~QgYl~~~------~~~~~v-----RvR~~g~~~~lT~Kg~~----g---~~R~E~E~~I~~~~~~~ll~~~---~~ 81 (153)
T 2fbl_A 23 VPLRQGYLTTP------TDSIEL-----RLRQQGTEYFMTLKSEG----G---LSRQEYEIQIDVTQFEMLWPAT---EG 81 (153)
T ss_dssp EEEEEEESSCT------TSSSEE-----EEEEETTEEEEEEEC-------------CEEEEEECHHHHHHHGGGG---TT
T ss_pred eEEEEEEecCC------CCceEE-----EEEEeCCEEEEEEEcCC----C---ceeEEEEEECCHHHHHHHHhhC---CC
Confidence 34567777744 4566 7 99999999999999987 5 6899999999 566666544 36
Q ss_pred EEEEEEEEEEEeCC-EEEEEecCCC-CC-CCeEEEEecChhH
Q 002197 333 ASYKRASTYVVYGN-LSVSFETIDT-LD-ETFMVLRGTNRKT 371 (954)
Q Consensus 333 ~~v~K~R~~~~~~~-~~i~lD~v~~-lG-~~FvEiE~~~~~~ 371 (954)
..++|+|..|.+++ ..++||.++| ++ -.++|||-.++++
T Consensus 82 ~~I~K~Ry~~~~~~~~~~evD~f~g~~~gL~~aEvE~~~e~e 123 (153)
T 2fbl_A 82 RRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVEFLSEDA 123 (153)
T ss_dssp SEEEEEEEEEECTTCCEEEEEEECGGGTTCEEEEEEESSHHH
T ss_pred CEEEEEEEEEEcCCcEEEEEEEECCcCCCeEEEEEEecCccc
Confidence 79999999999999 9999999997 34 3489999865543
No 113
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.50 E-value=1.2e-07 Score=95.23 Aligned_cols=101 Identities=23% Similarity=0.240 Sum_probs=63.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc------cCCCCCcccHHHHHHHHHhhhcCCccccccchh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD------EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~------~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~ 134 (954)
++.+|.|+|++||||||+++.|++.+|+.++++|++..... ........+.+.+.+.+.....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 78 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMR----------- 78 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHH-----------
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHh-----------
Confidence 34578899999999999999999999999999999754321 1111111222323332221110
Q ss_pred hhhccccccccccCCCcEEEEEecc--cchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 135 QQKNRIGSKVIKGASSGVVIVDGTY--ALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~--ll~~~l~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
. ... |+++.. .+.. ..+|.+||++++.++.+.|...|.
T Consensus 79 ------------~--g~~-vv~~~~~~~~~~---~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 79 ------------E--GGV-IVDYHGCDFFPE---RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp ------------H--CCE-EEECSCCTTSCG---GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred ------------c--CCE-EEEechhhhcch---hcCCEEEEEECCHHHHHHHHHHcC
Confidence 0 112 223222 1111 347899999999999999998884
No 114
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.50 E-value=7.9e-08 Score=95.57 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=34.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
..-+|+|+|++||||||+|+.|++.+|+.++++|++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~ 44 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE 44 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 356899999999999999999999999999999998764
No 115
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.50 E-value=1.2e-07 Score=97.02 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=65.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCC-eEEeccccccccccC--CCCC-c-ccHHHHHHHHHhhhcCCccccccchhh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVGVDEG--NDLD-S-IDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~-~VIs~Dd~y~~~~~~--~~p~-s-~D~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
+..+|+|+|++||||||+++.|+..+.. .-+......+..... ...+ . .+.+.+... ...+..+.++.+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 81 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL---IKDDQFIEYAEYVGN 81 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHH---HHcCCeEEEEeECCe
Confidence 3468999999999999999999986621 111111111110000 0000 0 122222221 122333344433321
Q ss_pred hhcccccccc-ccCCCcEEEEEecccchhhhhcCC-C-EEEEEE-cCHHHHHHHHHHhccCCccCHHHHHHhhchhhhhc
Q 002197 136 QKNRIGSKVI-KGASSGVVIVDGTYALDARLRSLL-D-IRVAVV-GGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKH 211 (954)
Q Consensus 136 ~~~~~~~~~~-~~~~~~vVIvEG~~ll~~~l~~~~-D-~~I~Vd-a~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~ 211 (954)
.+........ .......+|+|+.+.....+...+ | ..+|+. ++.+....|...|+..........++.+.+...
T Consensus 82 ~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~-- 159 (207)
T 2j41_A 82 YYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVE-- 159 (207)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CGGG--
T ss_pred ecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--
Confidence 1111000000 112346899999988776666655 7 445554 346688888777753222223333333333322
Q ss_pred cCCCcCcccEEEECC
Q 002197 212 IEPDLHHAQIRINNR 226 (954)
Q Consensus 212 Iep~~~~ADiII~N~ 226 (954)
....||++|+|+
T Consensus 160 ---~~~~~d~vI~n~ 171 (207)
T 2j41_A 160 ---MMNLYDYVVVND 171 (207)
T ss_dssp ---GGGGCSEEEECS
T ss_pred ---ccccCCEEEECC
Confidence 246789999987
No 116
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.49 E-value=2.6e-07 Score=94.63 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=37.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
...+++|+|+|++||||||+|+.|++.+|..++++|++.+.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~ 57 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRR 57 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHH
Confidence 45678999999999999999999999999999999998764
No 117
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.49 E-value=3.3e-07 Score=93.63 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=79.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccccccc----CCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~----~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
..+|||+||+||||||+++.|+..+....++.....+.... +...-..+...+..... .+.-.....+....+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 83 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK---EGAFLEHATIYERHY 83 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH---HTCEEEEEEETTEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh---cCcEEeeeeeecccc
Confidence 45899999999999999999998765222332222211110 00000112222222211 111111111100000
Q ss_pred ccc-cccccccCCCcEEEEEecccchhhhhcCCC--EEEEEEc-CHHHHHHHHHHhccCCccCHHHHHHhhchhhhhccC
Q 002197 138 NRI-GSKVIKGASSGVVIVDGTYALDARLRSLLD--IRVAVVG-GVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIE 213 (954)
Q Consensus 138 ~~~-~~~~~~~~~~~vVIvEG~~ll~~~l~~~~D--~~I~Vda-~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~Ie 213 (954)
... ............+++++.......+...++ ..||+.. +.+....|...|+..........++.+.+....
T Consensus 84 ~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~--- 160 (205)
T 3tr0_A 84 GTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAH--- 160 (205)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTT---
T ss_pred cchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc---
Confidence 000 000001122457888865433333333333 5577766 578888888888765556666666666555443
Q ss_pred CCcCcccEEEECC
Q 002197 214 PDLHHAQIRINNR 226 (954)
Q Consensus 214 p~~~~ADiII~N~ 226 (954)
...||+||.|+
T Consensus 161 --~~~~d~vi~n~ 171 (205)
T 3tr0_A 161 --YKEFDYLVVND 171 (205)
T ss_dssp --GGGCSEEEECS
T ss_pred --ccCCCEEEECC
Confidence 47899999998
No 118
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.49 E-value=1.7e-07 Score=96.98 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=67.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
.|+|+||+||||||+|+.|++.+|+.++++|++.+...... +. .....-..+..|..+...........+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~-------~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~ 71 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNG-------TE---LGLKAKSFMDQGNLVPDEVTIGIVHER 71 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTT-------CH---HHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcC-------CH---HHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 58899999999999999999999999999999988521110 00 001111111122211110000000000
Q ss_pred CCccceeeccCccEEEEEeecccc---hhhhh-------cCCeEEEEEcChhHHHHHHHhc
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH---PEIRK-------SLDLWIAVVGGVHSHLISRVQR 649 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~---~~l~~-------~~D~~I~v~~~~d~rl~Rri~R 649 (954)
. ........+|++|..... ..+.. .+|..|++++|.+..+.|...|
T Consensus 72 l-----~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 72 L-----SKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp H-----TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred H-----hcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 0 000113457888853322 12222 2789999999999999998887
No 119
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.48 E-value=2.1e-07 Score=94.70 Aligned_cols=61 Identities=3% Similarity=0.049 Sum_probs=38.4
Q ss_pred cCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhchhhhhccCCCc-CcccEEEECCC
Q 002197 167 SLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDL-HHAQIRINNRF 227 (954)
Q Consensus 167 ~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~v~p~~~~~Iep~~-~~ADiII~N~~ 227 (954)
...|.+|||++|+++++.|...|..... .....+.+++...+..+.+++. ..++++|+|+.
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~ 185 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL 185 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence 4578999999999999999877631100 0001333444444444343444 67899999884
No 120
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.48 E-value=6.3e-07 Score=89.47 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=35.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
...+|+|+|++||||||+++.|+..+|..+++.|++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~ 45 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR 45 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccch
Confidence 457899999999999999999999999999999998753
No 121
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.47 E-value=2.1e-07 Score=96.82 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=70.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~ 140 (954)
+++.|.|.|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+. .|..+.............
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~---~g~~i~~~~~---~g~~~~~~~~~~~l~~~l 76 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQ---LGLEAKKIMD---QGGLVSDDIMVNMIKDEL 76 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCH---HHHHHHHHHH---TTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCCh---HHHHHHHHHH---CCCcCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999987643222211 0111222221 122111000101111111
Q ss_pred cccccccCCCcEEEEEeccc-ch--hh-------hhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 141 GSKVIKGASSGVVIVDGTYA-LD--AR-------LRSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l-l~--~~-------l~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
.. .......+|++|... .. .. ....+|.+||++++.++.+.|...|.
T Consensus 77 ~~---~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 77 TN---NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp HH---CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred Hh---ccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 00 001123577898321 11 11 11357899999999999999988775
No 122
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.47 E-value=1.2e-07 Score=94.49 Aligned_cols=112 Identities=15% Similarity=0.036 Sum_probs=67.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHH-HhCCeEEeccccccccccCCCC--CcccHH---HHHHHHHhhhcCCccccccchhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLAS-VIGCTLISMENYRVGVDEGNDL--DSIDFD---ALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~-~Lg~~VIs~Dd~y~~~~~~~~p--~s~D~~---~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
|.+|.|+|++||||||+|+.|++ .+|+.+|++|.+...+...... ..++.+ .+.+.+....
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 68 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTA------------- 68 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHH-------------
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHH-------------
Confidence 47899999999999999999998 6899999999875533221000 112211 1111111100
Q ss_pred hhccccccccccCCCcEEEEEecccch---hhhhc------CCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRS------LLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~---~~l~~------~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
... .........+|++|..... ..+.. .-...||+++|.++++.|...|..
T Consensus 69 -~~~----l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 128 (181)
T 1ly1_A 69 -KSI----LYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (181)
T ss_dssp -HHH----HTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred -HHH----HhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence 000 0000234578999876532 12222 123689999999999999888764
No 123
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.47 E-value=2.9e-07 Score=93.27 Aligned_cols=120 Identities=17% Similarity=0.136 Sum_probs=71.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (954)
++.+|+|+|++||||||+|+.|++.+|..++++|++++..... ++.....+.+.+ ..|+.+.. ...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~-------~~~~~~~i~~~~---~~g~~~~~----~~~ 73 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSS-------GSARGKKLSEIM---EKGQLVPL----ETV 73 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT-------TCHHHHHHHHHH---HTTCCCCH----HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHc-------CChHHHHHHHHH---HcCCcCCH----HHH
Confidence 5678999999999999999999999999999999988753110 011111122221 22332110 000
Q ss_pred cccCCccce-eeccCccEEEEEeecccchh---h---hhcCCeEEEEEcChhHHHHHHHhcC
Q 002197 596 GARSGFKEL-EVSEDCGVIIFEGVYALHPE---I---RKSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 596 ~dr~~~~~~-~~~~~~dVVIvEG~~~~~~~---l---~~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
+.... ..+ ........+|++|....... + ....|..||+++|.+.++.|...|.
T Consensus 74 ~~~~~-~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 74 LDMLR-DAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHHHH-HHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence 00000 000 00113467899984322211 1 2446899999999999999988775
No 124
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.46 E-value=2.3e-07 Score=96.63 Aligned_cols=120 Identities=13% Similarity=-0.028 Sum_probs=70.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~ 140 (954)
+++.|.|.|++||||||+|+.|++.+|+.++++|++.+.....+.+. . ..+.+.+.. |..+.............
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~--g-~~i~~~~~~---g~~~~~~~~~~~i~~~l 77 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKI--G-LEAKSIIES---GNFVGDEIVLGLVKEKF 77 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--C--C-HHHHHHHHH---TCCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHH--H-HHHHHHHHC---CCcCCHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999876433222211 1 122222221 22111111111111111
Q ss_pred cccccccCCCcEEEEEecccc-h--hh----h---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 141 GSKVIKGASSGVVIVDGTYAL-D--AR----L---RSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll-~--~~----l---~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
. .......+|++|...- . .. + ....|.+||+++|+++.+.|...|.
T Consensus 78 ~----~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 78 D----LGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp H----TTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred h----ccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 0 0112345788984221 0 11 1 1246899999999999999988775
No 125
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.46 E-value=8.8e-08 Score=96.45 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=34.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG 99 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~ 99 (954)
+.+|.|+|++||||||+|+.|++.+| +.++++|++.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~ 45 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE 45 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence 35899999999999999999999998 899999987653
No 126
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.46 E-value=2e-06 Score=85.80 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=31.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEE--ecccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI--SMENYRV 98 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VI--s~Dd~y~ 98 (954)
+.+|.|+|++||||||+|+.|++.++...+ +.|.+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 358999999999999999999999986654 5887644
No 127
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.45 E-value=8e-08 Score=95.50 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=34.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.+|+|+|++||||||+|+.|++.+|+.++++|+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~ 39 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQH 39 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHH
Confidence 4689999999999999999999999999999998764
No 128
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.44 E-value=3.7e-08 Score=100.31 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=39.8
Q ss_pred hcCCeEEEEEcChhHHHHHHHhcCccccccccch---hhHHhhhcchhhhhccccc-CcccEEEcCCC
Q 002197 627 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ---NDIMMTVFPMFQQHIEPHL-VHAHLKIRNDF 690 (954)
Q Consensus 627 ~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~---~q~~~~v~p~~~~~Iep~~-~~ADivI~n~~ 690 (954)
...|..||+++|.++++.|...| |+.... .++...+...|..+.+++. ..++++|+++-
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R-----~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~ 185 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKR-----GRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL 185 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHH-----TCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHc-----CChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence 45789999999999999987665 222221 1344455566666555554 66899998764
No 129
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.44 E-value=3.4e-07 Score=92.10 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=34.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~~ 554 (954)
+.+|.|+|++||||||+|+.|++.++ ..++++|++++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~ 45 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE 45 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence 45899999999999999999999998 889999988764
No 130
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.42 E-value=3.1e-07 Score=95.06 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=66.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
.|+|+||+||||||+|+.|++.+|+.++++|++.+...... + +.....-..+..|..+...........+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~-------~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 71 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEE-------T---PLGLEAKSYIDKGELVPDEVTIGIVKER 71 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTT-------C---HHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcC-------C---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 58899999999999999999999999999999987521110 0 0000111111112111100000000000
Q ss_pred CCccceeeccCccEEEEEeecccc---hhhhh-------cCCeEEEEEcChhHHHHHHHhc
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH---PEIRK-------SLDLWIAVVGGVHSHLISRVQR 649 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~---~~l~~-------~~D~~I~v~~~~d~rl~Rri~R 649 (954)
. ........+|++|..... ..+.. .+|..|++++|.++.+.|...|
T Consensus 72 l-----~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 72 L-----GKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp H-----TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred H-----hcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 0 000113457888842221 11222 3789999999999999999888
No 131
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.41 E-value=2.1e-07 Score=97.44 Aligned_cols=120 Identities=11% Similarity=-0.024 Sum_probs=69.3
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
.+|.+|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+. .|..+...........+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~---~g~~i~~~~~---~g~~~~~~~~~~~~~~~ 78 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTE---IGVLAKAFID---QGKLIPDDVMTRLALHE 78 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCH---HHHHHHHHHT---TTCCCCHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCCh---HHHHHHHHHH---cCCcCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999986643211111 0111111111 12211100000001111
Q ss_pred ccccccccCCCcEEEEEecccch---hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 140 IGSKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~---~~l~--~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
... . ....+|+||..... ..+. ...|.+||++++.+.++.|...|.
T Consensus 79 l~~----~-~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 79 LKN----L-TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp HHT----C-TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred Hhc----c-cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence 110 0 12346788854322 1122 357899999999999999987763
No 132
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.41 E-value=5.4e-07 Score=92.74 Aligned_cols=161 Identities=19% Similarity=0.160 Sum_probs=79.9
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCC-eEEecccccccccc----CCCCCcccHHHHHHHHHhhhcCCccccccch
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVGVDE----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFD 133 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~-~VIs~Dd~y~~~~~----~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d 133 (954)
..+..+|+|+|++||||||+++.|++.++. ...+....-+.... +....-.+.+.+...+. .+.-+....+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 85 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK---EGQFLEFDKYA 85 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH---TTCEEEEEEET
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHH---cCCCEEeHHhC
Confidence 445678999999999999999999998753 22222111111110 00111123344443322 23222222221
Q ss_pred hhhhccccc-cccccCCCcEEEEEecccchhhhhcCC---C-EEEEEE-cCHHHHHHHHHHhccCCccCHHHHHHhhchh
Q 002197 134 YQQKNRIGS-KVIKGASSGVVIVDGTYALDARLRSLL---D-IRVAVV-GGVHFSLISKVQYDIGDSCSLDSLIDSIFPL 207 (954)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~~vVIvEG~~ll~~~l~~~~---D-~~I~Vd-a~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~ 207 (954)
...+..... ..........+|+++..-....+...+ + ..|||+ ++.+...+|...|... +.+.+.+++...
T Consensus 86 ~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~---~~~~i~~rl~~~ 162 (204)
T 2qor_A 86 NNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTE---KPEEINKRMQEL 162 (204)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTS---CHHHHHHHHHHH
T ss_pred CCeecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCC---CHHHHHHHHHHH
Confidence 111111000 000112456888886543333444443 3 889999 8888888887766432 233332222111
Q ss_pred hhhccCC-CcCcccEEEECC
Q 002197 208 FRKHIEP-DLHHAQIRINNR 226 (954)
Q Consensus 208 ~~~~Iep-~~~~ADiII~N~ 226 (954)
... +.+ +...+|++|.|+
T Consensus 163 ~~~-~~~~~~~~~d~vi~n~ 181 (204)
T 2qor_A 163 TRE-MDEADKVGFNYFIVND 181 (204)
T ss_dssp HHH-HHHHHHHTCSEEEECS
T ss_pred HHH-HHHhhhccCcEEEECc
Confidence 111 111 246789999997
No 133
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.41 E-value=2.8e-07 Score=97.13 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=34.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~ 98 (954)
++++|+|+|++||||||+|+.|++.||+++++.|.+..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~ 50 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL 50 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHH
Confidence 35799999999999999999999999999999776644
No 134
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.40 E-value=9.3e-07 Score=88.90 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=32.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV 98 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~ 98 (954)
|.+|.|+|++||||||+|+.|++.++ +.+++.|++..
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 56899999999999999999999997 77788777653
No 135
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.38 E-value=5.2e-07 Score=94.45 Aligned_cols=116 Identities=11% Similarity=-0.016 Sum_probs=69.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
.|+|.|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+. .|..+.. ......+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~---~g~~i~~~~~---~g~~~~~----~~~~~~i~~~ 71 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTE---LGKKAKEFID---RGDLVPD----DITIPMVLET 71 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCH---HHHHHHHHHT---TTCCCCH----HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCH---HHHHHHHHHH---cCCcCcH----HHHHHHHHHH
Confidence 6899999999999999999999999999999986643222111 1122222221 2221111 1111111110
Q ss_pred ccccCCCcEEEEEecccc-h--hhh-------hcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 144 VIKGASSGVVIVDGTYAL-D--ARL-------RSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll-~--~~l-------~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
..... ...+|+||.... . ..+ ....|.+||+++|+++.+.|...|.
T Consensus 72 l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 72 LESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp HHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred Hhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 00001 357889983321 1 111 1357899999999999999988875
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.37 E-value=4.6e-07 Score=90.79 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=24.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
+|.+|.|+|++||||||+|+.|++.+|..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999999998887
No 137
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.36 E-value=1.5e-06 Score=92.90 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=33.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~ 96 (954)
|.+|+|+|++||||||+|+.|++.+|+.++++|++
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 46899999999999999999999999999999996
No 138
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.36 E-value=1.5e-07 Score=99.08 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=33.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
..++|+|+|++||||||+|+.|++.||+.+++.|.+..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~ 50 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL 50 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHH
Confidence 46799999999999999999999999999999666554
No 139
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.35 E-value=4.6e-07 Score=95.31 Aligned_cols=122 Identities=15% Similarity=0.056 Sum_probs=69.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
...+..|.|.|++||||||+|+.|++.+|+.++++|++.+.....+.+ -...+.+.+. .|..+...........
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~---~g~~i~~~~~---~g~~~~~~~~~~~i~~ 86 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSE---LGKKLKATMD---AGKLVSDEMVLELIEK 86 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCH---HHHHHHHHHH---TTCCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCh---hHHHHHHHHH---CCCcCCHHHHHHHHHH
Confidence 345678999999999999999999999999999999876542211110 0111122111 1211111001111111
Q ss_pred cccccccccCCCcEEEEEecc-cch--h----hhh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 139 RIGSKVIKGASSGVVIVDGTY-ALD--A----RLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~-ll~--~----~l~---~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
.... .....-+|++|.. ... . .+. ...|.+||++++.++.+.|...|.
T Consensus 87 ~l~~----~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 87 NLET----PPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp HHTS----GGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred HHhc----ccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 1110 0111247788832 111 1 111 247999999999999999988774
No 140
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.34 E-value=4.3e-07 Score=97.25 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=35.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD 101 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~ 101 (954)
..+|+|+|++||||||+++.|++.+|..++++|.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~ 87 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM 87 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh
Confidence 3579999999999999999999999999999999876443
No 141
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.33 E-value=8e-07 Score=91.45 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=68.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCC-ceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFD 592 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~-~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD 592 (954)
...+.+|+|+|||||||||+++.|++.++. ...+..+.-+.....+.+..+..-.+.+.+.+ .+..|.-+..+.+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 85 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER---KLKEGQFLEFDKYA 85 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH---HHHTTCEEEEEEET
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH---HHHcCCCEEeHHhC
Confidence 345678899999999999999999998753 22232222111111111100111123333332 23445555544433
Q ss_pred ccccccCCccce-eeccCccEEEEEeecccchhhhhcC---C-eEEEEE-cChhHHHHHHHhc
Q 002197 593 LETGARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSL---D-LWIAVV-GGVHSHLISRVQR 649 (954)
Q Consensus 593 ~~~~dr~~~~~~-~~~~~~dVVIvEG~~~~~~~l~~~~---D-~~I~v~-~~~d~rl~Rri~R 649 (954)
........ ... ........+|+++.......++..+ + ..||++ ++.+....|...|
T Consensus 86 ~~~~~~~~-~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R 147 (204)
T 2qor_A 86 NNFYGTLK-SEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNR 147 (204)
T ss_dssp TEEEEEEH-HHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTC
T ss_pred CCeecCCH-HHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHc
Confidence 22111100 001 1123467888887554444555554 3 789998 7777777766554
No 142
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.33 E-value=3.8e-07 Score=93.62 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=29.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
++.+|+|+|++||||||+|+.|++.+|...+++|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 45789999999999999999999998765555543
No 143
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.33 E-value=6.1e-07 Score=90.60 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=35.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
..+.+|.|+|++||||||+|+.|++.+|..+++.|++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~ 41 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKE 41 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHH
Confidence 357889999999999999999999999999999998754
No 144
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.33 E-value=5.7e-07 Score=93.20 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=66.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
.|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+..- .+.+.+. .|..+....+..........
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~---~i~~~~~---~g~~~~~~~~~~~i~~~l~~- 74 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGK---QAKDIMD---AGKLVTDELVIALVKERIAQ- 74 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTG---GGHHHHH---HTCCCCHHHHHHHHHHHHTS-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHH---HHHHHHH---CCCcCCHHHHHHHHHHHHhc-
Confidence 4899999999999999999999999999999987642211111111 1111111 12111000000011111100
Q ss_pred ccccCCCcEEEEEeccc-ch--hhhh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 144 VIKGASSGVVIVDGTYA-LD--ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~l-l~--~~l~---~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
......+|++|... .. ..+. ...|.+||++++.+..+.|...|.
T Consensus 75 ---~~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 75 ---EDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp ---GGGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred ---cccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 01113477888421 11 1222 246999999999999999988775
No 145
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.31 E-value=8.8e-07 Score=91.64 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=32.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
..+|+|+|++||||||+++.|++.||+.+++ ++.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~ 41 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLD 41 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHH
Confidence 4589999999999999999999999999998 66664
No 146
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.30 E-value=1.3e-06 Score=88.02 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=29.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCceecccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L---g~~vIs~Dd 550 (954)
+|+|+|++||||||+|+.|++.+ |+.++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999999999999999988 899999875
No 147
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.30 E-value=1.3e-06 Score=88.55 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=36.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH-hCCceeccccccch
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANI-VGCEVVSLESYFKS 554 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~-Lg~~vIs~Ddfy~~ 554 (954)
.++.+|+|+|++||||||+|+.|++. +|+.++++|++.+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 34568999999999999999999999 79999999998775
No 148
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=98.28 E-value=2.9e-06 Score=87.48 Aligned_cols=122 Identities=15% Similarity=0.171 Sum_probs=95.8
Q ss_pred hcccccccCCCCCCCCCcCCcc-eEEEEeeCCEEEEEeeccccccCcccccceeEEehh---------------hHHHHH
Q 002197 729 NFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLREGNFIIQPKVDFDISI---------------STVAGL 792 (954)
Q Consensus 729 ~y~~~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~---------------~~~~~l 792 (954)
.-.++||..| +.+++..+ +||||..++++.+|+|.|..++ ++|++.+++. .+...|
T Consensus 35 ~~~n~YfDTp----d~~L~~~~~~LRiR~~~~~~~~TlK~~~~~g----~~E~~~~l~~~ea~~~l~~~~~p~~~i~~~l 106 (195)
T 3tj7_A 35 KQVNHYFETP----NSSLKEAGSALRIRHKGETYTLTLKQPAEVG----LLETHQVVTENEAKMMMETNVIISGAVMNQL 106 (195)
T ss_dssp EEEEEEEECT----TCHHHHTTCEEEEEEETTEEEEEEEEECSSS----EEEEEEEECHHHHHHHHHSSCCCSSHHHHHH
T ss_pred EEEEEEEeCC----cHhHHhCCCEEEEEeECCeEEEEEeeCCCCC----ceEEEeeCCHHHHHHHhhcCCCChHHHHHHH
Confidence 3456888878 66666666 9999999999999999998764 7888888852 577899
Q ss_pred HHhCcee-----eeeeeeeeEEeecCcEEEEEecccCCCCc-e-EEE----ecccHHHHHHHHhhcCCCCCccchhHH
Q 002197 793 LNLGYQA-----VAYIEASAFIYQDGKILIEVDHLQDAPSP-Y-LQI----KGVDKEAVAAAGSTLKLDGSYTTKSYL 859 (954)
Q Consensus 793 ~~lg~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-~~~----~~~~~~~v~~~~~~l~~~~~~~~~syl 859 (954)
.++||.. ++.++..|..|...+-++++|+++.+|.. | ||+ .+..++.+.++++++||+..+.+ |=+
T Consensus 107 ~~~g~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~~~-sKi 183 (195)
T 3tj7_A 107 CKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRHTN-NKV 183 (195)
T ss_dssp HHHTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC------
T ss_pred HHcCCCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCCCC-CHH
Confidence 9999887 48999999888888889999999999944 5 444 34567789999999999887644 533
No 149
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.26 E-value=4.5e-06 Score=85.28 Aligned_cols=32 Identities=31% Similarity=0.298 Sum_probs=27.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCe--EEec
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCT--LISM 93 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~--VIs~ 93 (954)
+.+|+|+|++||||||+|+.|++.++.. ++.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 4789999999999999999999999863 5543
No 150
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.26 E-value=1.7e-06 Score=90.73 Aligned_cols=125 Identities=12% Similarity=-0.032 Sum_probs=74.7
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 002197 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 58 ~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
+..++++|.|.||+||||+|.|+.|++.+|+..|++++..+.....+.+ -...+.+. +..|.-+.-........
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~---lg~~~~~~---~~~G~lVpde~~~~lv~ 98 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSP---KGKELKAM---MERGELVPLEVVLALLK 98 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCH---HHHHHHHH---HHHTCCCCHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCc---hHHHHHHH---HhcCCCCCHHHHHHHHH
Confidence 4567789999999999999999999999999999999987643322211 01111111 12243322211111111
Q ss_pred ccccccccccCCCcEEEEEecccch---h---hhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 138 NRIGSKVIKGASSGVVIVDGTYALD---A---RLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~ll~---~---~l~~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.+... ......-+|+||.---. . ......|.+|+++++.++...|...|..
T Consensus 99 ~~l~~---~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~ 155 (217)
T 3umf_A 99 EAMIK---LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE 155 (217)
T ss_dssp HHHHH---HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred HHHhh---ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc
Confidence 11111 01123468899853211 1 1223478999999999999999877754
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.25 E-value=1.6e-06 Score=90.03 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=36.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
++++|.|.|++||||||+|+.|++.+++.++++|++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 41 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS 41 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHH
Confidence 567899999999999999999999999999999999875
No 152
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.25 E-value=3.7e-06 Score=84.32 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=30.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L---g~~VIs~Dd 95 (954)
+..+|+|+|++||||||+++.|++.+ |++++++|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 35789999999999999999999988 888876654
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.25 E-value=1.7e-06 Score=88.34 Aligned_cols=131 Identities=12% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC-ceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~-~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~ 594 (954)
.+.+|+|.||+||||||+++.|+..+.. .-++..+..+.......+....--.+.+.+... ...|..+..+.+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 81 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL---IKDDQFIEYAEYVGN 81 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHH---HHcCCeEEEEeECCe
Confidence 4568999999999999999999886621 111111111110000000000000122222221 344555666655432
Q ss_pred ccccCCccce-eeccCccEEEEEeecccchhhhhcC-Ce-EEEEE-cChhHHHHHHHhcC
Q 002197 595 TGARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSL-DL-WIAVV-GGVHSHLISRVQRD 650 (954)
Q Consensus 595 ~~dr~~~~~~-~~~~~~dVVIvEG~~~~~~~l~~~~-D~-~I~v~-~~~d~rl~Rri~RD 650 (954)
..... .... ........+|+++.+.+...+...+ |. .+|+. ++.+....|...|+
T Consensus 82 ~~g~~-~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~ 140 (207)
T 2j41_A 82 YYGTP-VQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRG 140 (207)
T ss_dssp EEEEE-HHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC------------
T ss_pred ecCCC-HHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcC
Confidence 11100 0011 1122357899999887766676666 74 45554 34567777766664
No 154
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.24 E-value=6.6e-06 Score=84.28 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=35.3
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh---CCe--EEecccccccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GCT--LISMENYRVGV 100 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~L---g~~--VIs~Dd~y~~~ 100 (954)
..+..+|+|+|++||||||+++.|+..+ |.. .++.|++...+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~ 68 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL 68 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh
Confidence 4567899999999999999999999988 655 78888876544
No 155
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.24 E-value=3.3e-07 Score=95.44 Aligned_cols=122 Identities=15% Similarity=0.054 Sum_probs=68.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~ 139 (954)
.+|.+|.|.|++||||||+|+.|++.+|..++++|++.+.....+.+ ....+.+.+. .|..+....+......+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~---~g~~i~~~~~---~g~~~~~~~~~~~~~~~ 76 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSE---NGKRAKEFME---KGQLVPDEIVVNMVKER 76 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCH---HHHHHHHHHH---TTCCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCc---hhHHHHHHHH---cCCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999986642111111 1111222221 12211100111101111
Q ss_pred ccccccccCCCcEEEEEecccch---hhhhc---CCCEEEEEEcCHHHHHHHHHHhc
Q 002197 140 IGSKVIKGASSGVVIVDGTYALD---ARLRS---LLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~ll~---~~l~~---~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
...... .... +|++|...-. ..+.. ..|++||++++.+..+.|...|.
T Consensus 77 ~~~~~~--~~~~-~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~ 130 (222)
T 1zak_A 77 LRQPDA--QENG-WLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRR 130 (222)
T ss_dssp HHSHHH--HHTC-EEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEE
T ss_pred Hhhccc--cCCc-EEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 100000 0123 4448832211 12222 35899999999999999987764
No 156
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.23 E-value=1.4e-06 Score=91.99 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=71.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNRI 140 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~-~g~~i~~p~~d~~~~~~~ 140 (954)
.+.+||.|++||||||+|+.|++.+|+.+|++|++.+.....+.+ +-..+..+. .|..+.-.........+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~-------lG~~i~~~~~~G~lvpdei~~~ll~~~l 80 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTP-------LGVEAKTYMDEGKLVPDSLIIGLVKERL 80 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCCh-------HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 467899999999999999999999999999999987643222211 111222221 233222212211122221
Q ss_pred cccccccCCCcEEEEEecccch---hhhh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 141 GSKVIKGASSGVVIVDGTYALD---ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~ll~---~~l~---~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
... ....-+|+||.---. ..+. ...|.+|++++|.++.+.|...|.
T Consensus 81 ~~~----~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 81 KEA----DCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp HSG----GGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred hCc----ccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 110 111246889952221 1222 247999999999999999999885
No 157
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.22 E-value=2.4e-07 Score=101.79 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=90.3
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc--cccccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhh
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd--~y~~~~~~~~-p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
...+.+|.|+||+||||||+|..|++.++..+|++|+ +|++++-... |...+.+....+|-+...-.+ .+..-+|.
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e-~~s~~~f~ 85 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQ-AYSAADFR 85 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTS-CCCHHHHH
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccc-cccHHHHH
Confidence 3456899999999999999999999999999999999 4887765432 222222222222222221111 11111222
Q ss_pred hhccccccccccCCCcEEEEEecccchhhhh-cCCCEEEEEEcCHHHHHHHHHHhccCCc--cCHHHHHHhhchhhhhcc
Q 002197 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLR-SLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFRKHI 212 (954)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~ll~~~l~-~~~D~~I~Vda~~~~rl~Rri~RD~~~r--~~~e~~~~~v~p~~~~~I 212 (954)
......-..+.......|++.|..++-..+. .+.+.. .++++.+ ..+....... ...-+.+..+.|..-.
T Consensus 86 ~~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p---~~~~~~R--~~l~~~~~~~g~~~l~~~L~~~DP~~A~-- 158 (316)
T 3foz_A 86 RDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLP---SADPEVR--ARIEQQAAEQGWESLHRQLQEVDPVAAA-- 158 (316)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCC---CCCHHHH--HHHHHHHHHHHHHHHHHHHHHHCHHHHH--
T ss_pred HHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCC---CCCHHHH--HHHHHHHHhcCHHHHHHHHHHhCHHHHh--
Confidence 1111111111223344688899998875544 332321 2243332 2222111110 1122233334454443
Q ss_pred CCCcCcccEEEECCCCCchhhhhhhhcccCc-CCCCCcccccc
Q 002197 213 EPDLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (954)
Q Consensus 213 ep~~~~ADiII~N~~~~~~~~~~y~lk~~~~-~l~g~~~~~~~ 254 (954)
-|-.|| +..++++.+. ..+|.+.+.+.
T Consensus 159 --------ri~pnd-------~~Ri~RALEV~~~TG~~~S~~~ 186 (316)
T 3foz_A 159 --------RIHPND-------PQRLSRALEVFFISGKTLTELT 186 (316)
T ss_dssp --------HSCTTC-------HHHHHHHHHHHHHHSSCHHHHH
T ss_pred --------hCCCcc-------HHHHHHHHHHHHHHCCCHHHHh
Confidence 233466 7788888776 66777655443
No 158
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.22 E-value=1.6e-06 Score=87.11 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=35.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.+.+|+|+|++||||||+|+.|++.+|..++++|++.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~ 41 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRD 41 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 356899999999999999999999999999999998764
No 159
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.22 E-value=2.6e-06 Score=85.66 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=31.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~ 553 (954)
.+|.|.|++||||||+|+.|++.++ +.+++.|++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 5789999999999999999999987 67777777764
No 160
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.21 E-value=1e-07 Score=100.36 Aligned_cols=170 Identities=15% Similarity=0.076 Sum_probs=90.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-Cceeccccccch----hhhccccCCCCCcc----cHHHHHHHHHHH-----
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKS----EQVKDFKYDDFSSL----DLSLLSKNISDI----- 580 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg-~~vIs~Ddfy~~----~~~~~~n~d~p~t~----D~~lL~~~L~~L----- 580 (954)
.+..+|+|.|++||||||+++.|+..-| +.+...+..... .......+..+..+ ....+...+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i 97 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTN 97 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHHHhccc
Confidence 4568999999999999999999987633 222222211100 00000000111111 001111122222
Q ss_pred ----HcCCceecccccccccccCCccceeeccCccEEEEEeecccc-hhhhhcCCeEEEEEcChhHHHHHHHhcCccccc
Q 002197 581 ----RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (954)
Q Consensus 581 ----~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~RD~~~rg 655 (954)
..|..+..++|.++.....+. . ..+..+.++++|+.+. +......|+.||+++|.++++.|...|+...
T Consensus 98 ~~~l~~~r~v~~dry~~s~~ayq~~-~---l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~-- 171 (230)
T 2vp4_A 98 KKLKIMERSIFSARYCFVENMRRNG-S---LEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE-- 171 (230)
T ss_dssp SSEEEEESCHHHHHHTHHHHHHHHT-S---SCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCGG--
T ss_pred cCceeecCCccccHHHHHHHHHHcC-C---CChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcCCcc--
Confidence 123445556666664332210 1 1234566777776543 3244568999999999999999987774211
Q ss_pred cccchhhHHhhhcchhhhhcccc--cCccc-EEEcCCC
Q 002197 656 CFMSQNDIMMTVFPMFQQHIEPH--LVHAH-LKIRNDF 690 (954)
Q Consensus 656 ~~~~~~q~~~~v~p~~~~~Iep~--~~~AD-ivI~n~~ 690 (954)
.......+...+...|.+++..+ ...++ ++|+++-
T Consensus 172 e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~ 209 (230)
T 2vp4_A 172 ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADL 209 (230)
T ss_dssp GTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCC
Confidence 11111256777888888876432 23344 7777653
No 161
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.21 E-value=8e-07 Score=88.51 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=33.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH-HhCCceeccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMAN-IVGCEVVSLESYFK 553 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~-~Lg~~vIs~Ddfy~ 553 (954)
|.+|.|.|++||||||+|+.|++ .+|+.++++|.+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~ 39 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ 39 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHH
Confidence 56899999999999999999998 68899999987754
No 162
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.21 E-value=4.2e-06 Score=84.49 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=32.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG 99 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~ 99 (954)
.+..+|+|+|++||||||+++.|++.++ +.+++.|.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~ 55 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT 55 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHH
Confidence 3568999999999999999999999885 356777776443
No 163
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.19 E-value=6.2e-06 Score=84.06 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
..+|||.||+||||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998764
No 164
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.18 E-value=6.7e-07 Score=99.41 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc--cccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDE 102 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~--y~~~~~ 102 (954)
.++.+|.|+||+||||||||..|++.++..+|++|.+ |++++-
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdI 82 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDI 82 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceee
Confidence 3457899999999999999999999999999999995 776654
No 165
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.18 E-value=2.7e-06 Score=86.31 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=59.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhC----CeEEecccccc-ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENYRV-GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg----~~VIs~Dd~y~-~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~ 137 (954)
.+|+|+||+||||||+++.|+..+. ..+.+++.--+ +..++......+.+.+...... +.-+.+..+....+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~---~~~~e~~~~~~~~y 78 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKN---NEFIEWAQFSGNYY 78 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHT---TCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhh---cceeeEEEEeceec
Confidence 4689999999999999999998653 22322222111 1111111222233333333221 21122111111111
Q ss_pred ccc-cccccccCCCcEEEEEecccchhhhhc---CCCEEEEEEcCH-HHHHHHHHHhccCCccCHHHHHHhhchhhhhcc
Q 002197 138 NRI-GSKVIKGASSGVVIVDGTYALDARLRS---LLDIRVAVVGGV-HFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI 212 (954)
Q Consensus 138 ~~~-~~~~~~~~~~~vVIvEG~~ll~~~l~~---~~D~~I~Vda~~-~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~I 212 (954)
... ............+|++.-.-....+.. .--..|||.+|. +....|...|+.......+..+++....... .
T Consensus 79 g~~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~-~ 157 (186)
T 3a00_A 79 GSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAY-A 157 (186)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC---------------------------------
T ss_pred cCcHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-h
Confidence 100 000001123457777543222222222 234568999976 6666666666543333333334333322221 1
Q ss_pred CCCcCcccEEEECC
Q 002197 213 EPDLHHAQIRINNR 226 (954)
Q Consensus 213 ep~~~~ADiII~N~ 226 (954)
....+|+||.|+
T Consensus 158 --~~~~~d~vi~nd 169 (186)
T 3a00_A 158 --ETGAHDKVIVND 169 (186)
T ss_dssp ---CCCCSEEEECS
T ss_pred --cccCCcEEEECc
Confidence 136789999998
No 166
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.18 E-value=5.2e-06 Score=85.17 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=25.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCC
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~ 88 (954)
.++.+|+|+|++||||||+|+.|++.++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999998753
No 167
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.17 E-value=3.3e-06 Score=91.82 Aligned_cols=111 Identities=16% Similarity=0.063 Sum_probs=67.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh-CCeEEeccccccccccC--CCCCcccHH--HH-HHHHHhhhcCCccccccchhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDEG--NDLDSIDFD--AL-VQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs~Dd~y~~~~~~--~~p~s~D~~--~l-~~~L~~l~~g~~i~~p~~d~~ 135 (954)
+.+|.|+|++||||||+|+.|++.+ |+.+|++|.+...+... +....++.+ .. .+.+...
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------- 67 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDT-------------- 67 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHH--------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHH--------------
Confidence 4689999999999999999999874 89999999765433211 110112211 11 0111100
Q ss_pred hhccccccccc-cCCCcEEEEEecccch---hhhhc------CCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 136 QKNRIGSKVIK-GASSGVVIVDGTYALD---ARLRS------LLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 136 ~~~~~~~~~~~-~~~~~vVIvEG~~ll~---~~l~~------~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
... .+. ......+|+||...-. ..+.. .-+..||+++|.++.+.|...|..
T Consensus 68 ~~~-----~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 68 AKS-----ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (301)
T ss_dssp HHH-----HTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred HHH-----HHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence 000 000 0234578999987653 22221 123789999999999999988864
No 168
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.17 E-value=4.8e-06 Score=86.10 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=33.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC------CeEEecccccccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGV 100 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg------~~VIs~Dd~y~~~ 100 (954)
..++.+|.|+|++||||||+++.|++.++ +.+++.|.+...+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l 69 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL 69 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh
Confidence 45568999999999999999999999886 6667767665433
No 169
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.17 E-value=2.9e-06 Score=88.22 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=36.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 555 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~ 555 (954)
+++.|.|.|++||||||+|+.|++.+|+.++++|++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~ 43 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREA 43 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHH
Confidence 3567899999999999999999999999999999998753
No 170
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.16 E-value=2.7e-06 Score=88.88 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=35.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.++.+|.|.|++||||||+|+.|++.+|..++++|++++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 44 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRD 44 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHH
Confidence 3567899999999999999999999999999999999875
No 171
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.16 E-value=8.1e-07 Score=93.40 Aligned_cols=61 Identities=7% Similarity=0.092 Sum_probs=40.9
Q ss_pred hcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhchhhhhccCCC--cCccc-EEEECC
Q 002197 166 RSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPD--LHHAQ-IRINNR 226 (954)
Q Consensus 166 ~~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~~e~~~~~v~p~~~~~Iep~--~~~AD-iII~N~ 226 (954)
...+|++||+++|+++++.|...|+.... .....+.+++...|..+.+.+ ...++ ++|+++
T Consensus 144 ~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 144 HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp CCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 45689999999999999999888853211 112245666667777655332 34454 778877
No 172
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.16 E-value=2.7e-06 Score=89.13 Aligned_cols=157 Identities=12% Similarity=0.036 Sum_probs=60.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHH-HHhCCeEEeccccccccccC----CCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLA-SVIGCTLISMENYRVGVDEG----NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La-~~Lg~~VIs~Dd~y~~~~~~----~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~ 136 (954)
..+|||+||+||||||+++.|+ ..+.......+.-.+....+ ......+...+..... .+.-.....+....
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 103 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS---NGEIIEHAEVFGNF 103 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH---TTCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhh---cCceehhhhhcccc
Confidence 3589999999999999999998 76543222222111111111 0111123333332221 11111111010000
Q ss_pred hccccc-cccccCCCcEEEEEecccchhhhhcCC-C--EEEEEEc-CHHHHHHHHHHhccCCccCHHHHHHhhchhhhhc
Q 002197 137 KNRIGS-KVIKGASSGVVIVDGTYALDARLRSLL-D--IRVAVVG-GVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKH 211 (954)
Q Consensus 137 ~~~~~~-~~~~~~~~~vVIvEG~~ll~~~l~~~~-D--~~I~Vda-~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~ 211 (954)
+..... ..........+|++........+...+ + ..+|+.. +.+....|...|+..........++.+.+....
T Consensus 104 ~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~- 182 (231)
T 3lnc_A 104 YGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISH- 182 (231)
T ss_dssp EEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh-
Confidence 000000 000011234677775433333333334 2 3456655 667777777777644334444445555555443
Q ss_pred cCCCcCcccEEEECC
Q 002197 212 IEPDLHHAQIRINNR 226 (954)
Q Consensus 212 Iep~~~~ADiII~N~ 226 (954)
...||+||.|+
T Consensus 183 ----~~~~d~vI~n~ 193 (231)
T 3lnc_A 183 ----CEAYDYVIVNE 193 (231)
T ss_dssp ----GGGSSEEEECS
T ss_pred ----hcCCeEEEECc
Confidence 57899999998
No 173
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.15 E-value=3e-06 Score=84.99 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=35.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 555 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~ 555 (954)
.+.+|.|+|++||||||+|+.|++.+|+.++++|++....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 3456789999999999999999999999999999987653
No 174
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.15 E-value=7.8e-07 Score=98.51 Aligned_cols=40 Identities=38% Similarity=0.579 Sum_probs=36.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc--ccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD 101 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~--y~~~~ 101 (954)
+.+|.|+|++||||||+|..|++.+|+.+|++|++ |++++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~ 46 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMD 46 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCC
Confidence 46899999999999999999999999999999996 66554
No 175
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.12 E-value=5e-06 Score=86.90 Aligned_cols=116 Identities=15% Similarity=0.052 Sum_probs=66.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
+|.|.|++||||||+|+.|++.+|..++++|++.+..-.. ++-....+.+. +..|..+ |. ......
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~-------~~~~g~~i~~~---~~~g~~~--~~--~~~~~~ 67 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGG-------GTELGKKAKEF---IDRGDLV--PD--DITIPM 67 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTT-------TCHHHHHHHHH---HTTTCCC--CH--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHc-------CCHHHHHHHHH---HHcCCcC--cH--HHHHHH
Confidence 6889999999999999999999999999999998752100 00000111111 1122211 00 000000
Q ss_pred CCccceeeccCccEEEEEeecccc---hhhh-------hcCCeEEEEEcChhHHHHHHHhcC
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
.. ..+.... ...+|++|..... ..+. ...|..||+++|.+..+.|...|.
T Consensus 68 i~-~~l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 68 VL-ETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp HH-HHHHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred HH-HHHhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 00 0000001 4578889843221 1121 236899999999999999988775
No 176
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.12 E-value=6.3e-06 Score=88.32 Aligned_cols=105 Identities=11% Similarity=0.152 Sum_probs=63.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH---hCCcee--ccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANI---VGCEVV--SLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~---Lg~~vI--s~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~ 590 (954)
++.+|.|+|++||||||+|+.|++. +|..++ +.|.+.... . +|+.. .-..+........
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l--~--~~~~~---~e~~~~~~~~~~i--------- 66 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF--P--VWKEK---YEEFIKKSTYRLI--------- 66 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS--S--SCCGG---GHHHHHHHHHHHH---------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH--h--hhhHH---HHHHHHHHHHHHH---------
Confidence 4678999999999999999999997 677766 778764321 0 12111 0111111111000
Q ss_pred ccccccccCCccceeeccCccEEEEEeecccc---hhhhhc------CCeEEEEEcChhHHHHHHHhcC
Q 002197 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKS------LDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 591 yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~l~~~------~D~~I~v~~~~d~rl~Rri~RD 650 (954)
.. .... ..+|++|..... ..+... .+..||+++|.+..+.|...|.
T Consensus 67 -----------~~--~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 67 -----------DS--ALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp -----------HH--HHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred -----------HH--HhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 00 0122 577888755432 122222 2689999999999999987764
No 177
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.12 E-value=6.2e-06 Score=83.42 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=28.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh---CCceecccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L---g~~vIs~Dd 550 (954)
++|+|+|++||||||+|+.|++.+ |..++.++.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 379999999999999999999998 888886654
No 178
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.11 E-value=2.5e-06 Score=87.48 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=30.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceecccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd 550 (954)
++.+|+|+|++||||||+|+.|++.++...++.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 46789999999999999999999998866666654
No 179
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.09 E-value=1.2e-06 Score=87.52 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=33.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+|.|+|++||||||+|+.|++.+|+.+++.|+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~ 41 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ 41 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHH
Confidence 588999999999999999999999999999998764
No 180
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.08 E-value=3.4e-06 Score=88.46 Aligned_cols=124 Identities=10% Similarity=-0.005 Sum_probs=72.9
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccc
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFD 592 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD 592 (954)
+..++.+|.|.||+||||||.|+.|++.+|+..||++|.++.+-... -++..+.-.-+.+|+-+.-....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~----------t~lg~~~~~~~~~G~lVpde~~~ 94 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSG----------SPKGKELKAMMERGELVPLEVVL 94 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTC----------CHHHHHHHHHHHHTCCCCHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcC----------CchHHHHHHHHhcCCCCCHHHHH
Confidence 34678899999999999999999999999999999999988532110 01111222223334332211111
Q ss_pred ccccccCCccceeeccCccEEEEEeecccc---hhhh---hcCCeEEEEEcChhHHHHHHHhcC
Q 002197 593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 593 ~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
....++.. .......-+|++|.---. ..+. ...|..|+++++.+....|...|.
T Consensus 95 ~lv~~~l~----~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~ 154 (217)
T 3umf_A 95 ALLKEAMI----KLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA 154 (217)
T ss_dssp HHHHHHHH----HHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-
T ss_pred HHHHHHHh----hccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccc
Confidence 11111110 001123457888853211 1122 236789999999999998887764
No 181
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.08 E-value=3.4e-06 Score=100.02 Aligned_cols=118 Identities=22% Similarity=0.235 Sum_probs=69.7
Q ss_pred HHHHHHHHHh-cCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEeccccccccccCCCCCcccHHHHHHHHHhh
Q 002197 48 LVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL 121 (954)
Q Consensus 48 lv~~i~~~~~-~~~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l 121 (954)
+.+.+.+... +...+.+|.++|++||||||+|+.|++.++ +.+++.|.+.+.+.........+... .+..+
T Consensus 357 V~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~---~l~~i 433 (546)
T 2gks_A 357 VAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT---NILRV 433 (546)
T ss_dssp HHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHH---HHHHH
T ss_pred HHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHH---HHHHH
Confidence 4444444332 233468999999999999999999999886 47788887655432211111111111 11111
Q ss_pred hcCCccccccchhhhhccccccccccCCCcEEEEEecccchh---hhhcCC---C-EEEEEEcCHHHHHHHH
Q 002197 122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA---RLRSLL---D-IRVAVVGGVHFSLISK 186 (954)
Q Consensus 122 ~~g~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~~---~l~~~~---D-~~I~Vda~~~~rl~Rr 186 (954)
.. .. ... ......+|++++.++.. .++..+ | ..|||++|.++++.|.
T Consensus 434 ~~-----------~~-----~~~--l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl 487 (546)
T 2gks_A 434 GF-----------VA-----SEI--VKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERD 487 (546)
T ss_dssp HH-----------HH-----HHH--HHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHC
T ss_pred HH-----------HH-----HHH--HhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHh
Confidence 00 00 001 11235789998777652 334443 7 8999999999988774
No 182
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.07 E-value=6.7e-06 Score=85.06 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=33.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.|+|.|++||||||+|+.|++.+|..++++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence 478999999999999999999999999999999875
No 183
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.07 E-value=1.2e-05 Score=85.93 Aligned_cols=35 Identities=37% Similarity=0.478 Sum_probs=32.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceecccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy 552 (954)
.+|.|+||+||||||+|+.|++.+++.++++|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 47899999999999999999999999999999974
No 184
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.06 E-value=2.4e-06 Score=93.27 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=35.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh--CCeEEeccccccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVG 99 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~L--g~~VIs~Dd~y~~ 99 (954)
...+.+|.|+|++||||||+|+.|++.+ ++.+||+|.++..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~ 72 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 72 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh
Confidence 3457899999999999999999999988 7889999988654
No 185
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.06 E-value=7e-06 Score=87.57 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=35.5
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHhC--CeEEeccccccc
Q 002197 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVG 99 (954)
Q Consensus 58 ~~~~~~IIgItG~sGSGKSTlA~~La~~Lg--~~VIs~Dd~y~~ 99 (954)
....+.+|.|+|++||||||+|+.|++.++ +.+++.|.+...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQ 71 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHh
Confidence 344578999999999999999999999987 567888887553
No 186
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.05 E-value=2.5e-06 Score=88.24 Aligned_cols=158 Identities=11% Similarity=0.011 Sum_probs=71.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCC-eEEeccccccccc----cCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~-~VIs~Dd~y~~~~----~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~ 135 (954)
+..+|+|+||+||||||+++.|+..++. ........-+... ++......+.+.+.+.+. .+.-+.+..+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~---~~~~le~~~~~~~ 83 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIK---DGKMLEYAEYVGN 83 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH---TTCEEEEEEETTE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHh---cCcEEEEEEEccc
Confidence 4568999999999999999999987753 2222211111111 111111234444444332 1221221111111
Q ss_pred hhccc-cccccccCCCcEEEEEecccchhhhh-cCCC-EEEEEEcC-HHHHHHHHHHhccCCccCHHHHHHhhchhhhhc
Q 002197 136 QKNRI-GSKVIKGASSGVVIVDGTYALDARLR-SLLD-IRVAVVGG-VHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKH 211 (954)
Q Consensus 136 ~~~~~-~~~~~~~~~~~vVIvEG~~ll~~~l~-~~~D-~~I~Vda~-~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~ 211 (954)
.+... ............+|+++..-....+. .+.+ ..||+..+ .+....|...|...........++........
T Consensus 84 ~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~- 162 (208)
T 3tau_A 84 YYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEM- 162 (208)
T ss_dssp EEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHH-
T ss_pred cCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-
Confidence 11100 00001112334677766433332333 2333 67888766 66666666666533333344444433332222
Q ss_pred cCCCcCcccEEEECC
Q 002197 212 IEPDLHHAQIRINNR 226 (954)
Q Consensus 212 Iep~~~~ADiII~N~ 226 (954)
...+|++|.|+
T Consensus 163 ----~~~~d~vivN~ 173 (208)
T 3tau_A 163 ----MASYDYAVVND 173 (208)
T ss_dssp ----GGGSSEEEECS
T ss_pred ----hccCCEEEECc
Confidence 45789999998
No 187
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.05 E-value=5.3e-06 Score=86.22 Aligned_cols=114 Identities=17% Similarity=0.044 Sum_probs=68.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~~~~~~ 143 (954)
+|.|.||+||||+|.|+.|++.+|+..|++.++.+.....+.+ --...... +..|.-+.-.........+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~---lg~~~~~~---~~~G~lvpd~iv~~lv~~~l~-- 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTP---LGKKAKEY---MERGELVPDDLIIALIEEVFP-- 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCH---HHHHHHHH---HHHTCCCCHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcCh---hhhhHHHH---HhcCCcCCHHHHHHHHHHhhc--
Confidence 5789999999999999999999999999999987742221111 00111111 122333222111111111111
Q ss_pred ccccCCCcEEEEEecccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 002197 144 VIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYD 190 (954)
Q Consensus 144 ~~~~~~~~vVIvEG~~ll~-------~~l---~~~~D~~I~Vda~~~~rl~Rri~RD 190 (954)
..+-+|+||.---. ..+ .-..|.++++++|.++.+.|...|.
T Consensus 74 -----~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 74 -----KHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp -----SSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred -----cCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 12237889853221 111 1247899999999999999998884
No 188
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.05 E-value=3.1e-06 Score=90.64 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=34.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.+|+|+|++||||||+++.|+..+|..++++|+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~ 85 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQ 85 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHH
Confidence 4688999999999999999999999999999998764
No 189
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.05 E-value=6.6e-07 Score=98.41 Aligned_cols=42 Identities=33% Similarity=0.394 Sum_probs=37.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc--ccccccC
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEG 103 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~--y~~~~~~ 103 (954)
+.+|.|+||+||||||+|..|++.++..+|++|++ |++++-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~ig 46 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIG 46 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeec
Confidence 46899999999999999999999999999999996 8876643
No 190
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.05 E-value=6.8e-06 Score=94.30 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=65.5
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~~d~~~~~ 138 (954)
...+.+|.|+|++||||||+|+.|++.+|+.+|+.|.+. .+..+...+....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------~~~~~~~~~~~~l---------------- 306 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------------SWQRCVSSCQAAL---------------- 306 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------------SHHHHHHHHHHHH----------------
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------------HHHHHHHHHHHHH----------------
Confidence 345789999999999999999999999999999999972 1122222211111
Q ss_pred cccccccccCCCcEEEEEecccchh---hhh------cCCCEEEEEEcCHHHHHHHHHHhcc
Q 002197 139 RIGSKVIKGASSGVVIVDGTYALDA---RLR------SLLDIRVAVVGGVHFSLISKVQYDI 191 (954)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~ll~~---~l~------~~~D~~I~Vda~~~~rl~Rri~RD~ 191 (954)
.....+|+++...... .+. ...-..||++++.++++.|...|..
T Consensus 307 ---------~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 307 ---------RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp ---------HTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred ---------hcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 0112467887755431 111 1223678999999999999988865
No 191
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.04 E-value=2.3e-06 Score=89.06 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=36.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
.++.+|.|.|++||||||+|+.|++.++...+++|++++.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~ 42 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA 42 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 3567889999999999999999999999999999999875
No 192
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.02 E-value=4e-07 Score=96.97 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=31.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
|++|||+|++||||||+|+.|++.+|+++++..+
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~ 34 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAG 34 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCeEEecCh
Confidence 5789999999999999999999989999988765
No 193
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.02 E-value=7.5e-06 Score=86.02 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=36.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
..+..|.|.|++||||||+|+.|++.+++.++++|++.+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~ 53 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA 53 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 4567899999999999999999999999999999998764
No 194
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.97 E-value=1.5e-05 Score=81.60 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=29.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceecccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd 550 (954)
.++.+|+|+|++||||||+|+.|++.++...++.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~ 42 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 42 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 356789999999999999999999988644444443
No 195
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.96 E-value=9.2e-06 Score=82.32 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.+|||.||+||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998653
No 196
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.93 E-value=2.2e-05 Score=85.62 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=34.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh--CCceeccccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFK 553 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L--g~~vIs~Ddfy~ 553 (954)
..|.+|.|+|||||||||+|+.|++.+ +...||.|.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 457899999999999999999999988 688899998864
No 197
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.93 E-value=1.3e-05 Score=83.20 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=68.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
+|.|.||+||||+|.|+.|++.+|+..||+.|.++.+-... -++..+.-..+.+|+-+.--........+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~----------t~lg~~~~~~~~~G~lvpd~iv~~lv~~~ 71 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKG----------TPLGKKAKEYMERGELVPDDLIIALIEEV 71 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHT----------CHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhc----------ChhhhhHHHHHhcCCcCCHHHHHHHHHHh
Confidence 57789999999999999999999999999999998531110 01111111222334332211111111111
Q ss_pred CCccceeeccCccEEEEEeecccc-------hhhh---hcCCeEEEEEcChhHHHHHHHhcC
Q 002197 599 SGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRD 650 (954)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~-------~~l~---~~~D~~I~v~~~~d~rl~Rri~RD 650 (954)
. ...+-+|++|.---. ..+. -..|..++++++.+..+.|...|.
T Consensus 72 l--------~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 72 F--------PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp C--------CSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred h--------ccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 1 112337788853211 1111 136889999999999999988874
No 198
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.92 E-value=9.7e-06 Score=88.09 Aligned_cols=114 Identities=12% Similarity=-0.000 Sum_probs=65.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-CCceeccccccchhhhccccCCCCCcccH--H-HHHHHHHHHHcCCceeccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKDFKYDDFSSLDL--S-LLSKNISDIRNGRRTKVPIFD 592 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L-g~~vIs~Ddfy~~~~~~~~n~d~p~t~D~--~-lL~~~L~~L~~g~~v~~P~yD 592 (954)
|.+|.|+|++||||||+|+.|++.+ |+.++++|.+.........++ .+.++. + ...+.+..+.. +
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~------~--- 70 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERD--EYKYTKKKEGIVTGMQFDTAK------S--- 70 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC-----CCHHHHHHHHHHHHHHHH------H---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCccc--ccccchhhhhHHHHHHHHHHH------H---
Confidence 4689999999999999999999974 899999996643211000011 011211 1 11111111000 0
Q ss_pred ccccccCCccceeeccCccEEEEEeecccc---hhhhhc-----C-CeEEEEEcChhHHHHHHHhcCc
Q 002197 593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKS-----L-DLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 593 ~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~l~~~-----~-D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
.+........+|++|..... ..+.+. . +..||++++.+..+.|...|..
T Consensus 71 ----------~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 71 ----------ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (301)
T ss_dssp ----------HTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred ----------HHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence 00000224678889877542 223221 2 2789999999999999888753
No 199
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.92 E-value=1.5e-05 Score=84.06 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceecccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (954)
..+-+||.|++||||||+|+.|++.+|+..||+||+.+..-... + ++....-.-+.+|..+.-.......
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~-------t---~lG~~i~~~~~~G~lvpdei~~~ll 76 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAG-------T---PLGVEAKTYMDEGKLVPDSLIIGLV 76 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTT-------C---HHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCC-------C---hHHHHHHHHHhhccccccHHHHHHH
Confidence 35679999999999999999999999999999999988531100 0 0111111111122221111110000
Q ss_pred cccCCccceeeccCccEEEEEeecccc---hhhhh---cCCeEEEEEcChhHHHHHHHhcCc
Q 002197 596 GARSGFKELEVSEDCGVIIFEGVYALH---PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (954)
Q Consensus 596 ~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~l~~---~~D~~I~v~~~~d~rl~Rri~RD~ 651 (954)
.++.. ......-+|++|.---. ..+.+ ..|..|++++|.++.+.|...|..
T Consensus 77 ~~~l~-----~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 77 KERLK-----EADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT 133 (230)
T ss_dssp HHHHH-----SGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred HHHHh-----CcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence 11110 00011346778852211 12322 368999999999999999988854
No 200
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=97.89 E-value=5.5e-05 Score=77.74 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=94.4
Q ss_pred cccccccCCCCCCCCCcCCcc-eEEEEeeCCEEEEEeeccccccCcccccceeEEeh---------------hhHHHHHH
Q 002197 730 FIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLREGNFIIQPKVDFDIS---------------ISTVAGLL 793 (954)
Q Consensus 730 y~~~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~---------------~~~~~~l~ 793 (954)
-.++||..| +.+++..+ .||||..+++|.+|+|.|...+ |+|+|.+|+ ..+...|.
T Consensus 36 ~~n~YfDTp----d~~L~~~~~aLRiR~~~~~~~~TlK~~~~~g----R~E~e~~l~~~~~~~~l~~~~~p~~~~~~~l~ 107 (193)
T 2gfg_A 36 QRNHYFETD----DFQLKKQSSALRIREKEAIFTFTLKQPHPAG----LLETNQTLSKQEAKLALESAHFPSGEVMDALR 107 (193)
T ss_dssp EEEEEEECT----TCHHHHTTCEEEEEEETTEEEEEEEEECSSS----EEEEEEEECHHHHHHHHHHCCCCCSHHHHHHH
T ss_pred eEEEeeeCC----CHHHHhCCCEEEEEeeCCcEEEEEccCCCCC----CceEeccCCchhhhhhcccccCCcHHHHHHHH
Confidence 456888888 67777766 8999999999999999998753 999999996 25677888
Q ss_pred HhCcee-----eeeeeeeeEEeecCcEEEEEecccCCCCceEEE----ec--ccHHHHHHHHhhcCCCCCccchhHHH
Q 002197 794 NLGYQA-----VAYIEASAFIYQDGKILIEVDHLQDAPSPYLQI----KG--VDKEAVAAAGSTLKLDGSYTTKSYLQ 860 (954)
Q Consensus 794 ~lg~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~--~~~~~v~~~~~~l~~~~~~~~~syle 860 (954)
++|+.. +..+++.|..+..++-++++|.....+.++-|| +. ..+..+.++++++||..... .|=++
T Consensus 108 ~~~~~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~~~~-~SK~~ 184 (193)
T 2gfg_A 108 DLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPT-ENKIQ 184 (193)
T ss_dssp HTTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCCCCC-CCHHH
T ss_pred HhcCCccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCcCCC-cCHHH
Confidence 899874 677888887777776799999999998666666 22 22356678888899965544 56555
No 201
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.88 E-value=3.8e-06 Score=95.38 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=37.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc--ccccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDE 102 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd--~y~~~~~ 102 (954)
+.+|+|+||+||||||+|..|++.++..+|++|+ +|++++-
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i 44 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPI 44 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceeccccc
Confidence 4689999999999999999999999999999999 6887654
No 202
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.87 E-value=2.1e-05 Score=78.27 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=30.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCce--eccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEV--VSLESYFK 553 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~v--Is~Ddfy~ 553 (954)
+.+|.|+|++||||||+|+.|++.++... +++|++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 45788999999999999999999998654 46887754
No 203
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.87 E-value=3.5e-05 Score=78.58 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=25.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGC 543 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~ 543 (954)
+.+|.|.|++||||||+|+.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999876
No 204
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.87 E-value=7.1e-05 Score=78.80 Aligned_cols=154 Identities=12% Similarity=0.161 Sum_probs=77.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC--CeEEeccccccccccCCCCCcccHHHHHHHHHhhhcCCcccccc-----
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPM----- 131 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg--~~VIs~Dd~y~~~~~~~~p~s~D~~~l~~~L~~l~~g~~i~~p~----- 131 (954)
..+..+|.|.|++||||||+++.|++.++ ..++.+.. |..-. +.+.+.++........|.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~----------p~~~~---~g~~i~~~~~~~~~~~~~~~~ll 89 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE----------PGGVP---TGEEIRKIVLEGNDMDIRTEAML 89 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECT----------TTTCH---HHHHHHHHTTC---CCHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecC----------CCCCc---hHHHHHHHHhCCCCCCHHHHHHH
Confidence 34568999999999999999999999986 45554321 11000 111222211111100000
Q ss_pred chhhhhcccccccc-ccCCCcEEEEE----------ecc-cch-h---h---h---hcCCCEEEEEEcCHHHHHHHHHHh
Q 002197 132 FDYQQKNRIGSKVI-KGASSGVVIVD----------GTY-ALD-A---R---L---RSLLDIRVAVVGGVHFSLISKVQY 189 (954)
Q Consensus 132 ~d~~~~~~~~~~~~-~~~~~~vVIvE----------G~~-ll~-~---~---l---~~~~D~~I~Vda~~~~rl~Rri~R 189 (954)
+............. ......+||+| |.. .+. . . + ....|++||+++|+++.+.|...|
T Consensus 90 ~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R 169 (229)
T 4eaq_A 90 FAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN 169 (229)
T ss_dssp HHHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 00000000000000 01234588888 531 111 1 1 1 125799999999999999999888
Q ss_pred ccC-Ccc--CHHHHHHhhchhhhhccCCCcCcccEEEECC
Q 002197 190 DIG-DSC--SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 190 D~~-~r~--~~e~~~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
... .+. ....+.+++...|....... ...-++|+++
T Consensus 170 ~~~~dr~e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~ 208 (229)
T 4eaq_A 170 SRDQNRLDQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNAD 208 (229)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETT
T ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCC
Confidence 532 222 23455666666666643322 2234667766
No 205
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.84 E-value=0.00011 Score=75.00 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=32.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---CCc--eeccccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---GCE--VVSLESYFK 553 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~L---g~~--vIs~Ddfy~ 553 (954)
..++.+|+|.|++||||||+++.|+..+ |.. .++.|++..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 4567899999999999999999999988 554 667776654
No 206
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.80 E-value=1.8e-05 Score=81.77 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.++.+|+|.||+||||||+++.|+..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456899999999999999999998765
No 207
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.80 E-value=2.2e-05 Score=94.11 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=31.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L---g~~VIs~Dd 95 (954)
++.+|.|+|.+||||||+|+.|++.| |..++++|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 57899999999999999999999999 888877764
No 208
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.77 E-value=2.8e-05 Score=78.35 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=22.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.+|+|.||||||||||++.|...+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998653
No 209
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.74 E-value=4e-05 Score=76.51 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcee
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 546 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vI 546 (954)
++.+|.|+|++||||||+|+.|++.+|..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999999998777
No 210
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.73 E-value=4.3e-05 Score=79.95 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=16.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHH-HHhCC
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMA-NIVGC 543 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La-~~Lg~ 543 (954)
..+|||.||+||||||+++.|+ ..+..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----C
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4589999999999999999999 76543
No 211
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.72 E-value=5e-05 Score=90.57 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=34.1
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC------CeEEecccccccc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGV 100 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg------~~VIs~Dd~y~~~ 100 (954)
..++.+|.|+|.+||||||+|+.|++.|+ +.+++.|.+++++
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l 440 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL 440 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh
Confidence 34568999999999999999999999886 3567777776654
No 212
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.71 E-value=0.00024 Score=74.76 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=25.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
....+|.|.|++||||||+++.|++.++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999999886
No 213
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.69 E-value=0.00011 Score=78.31 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=33.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC--Cceeccccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFK 553 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg--~~vIs~Ddfy~ 553 (954)
...|.+|.|+|++||||||+|+.|+..++ +.+++.|.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS 70 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH
Confidence 34578999999999999999999999986 56778887743
No 214
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=97.63 E-value=7.7e-05 Score=77.50 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=96.5
Q ss_pred cccccccCCCCCCCCCcCCcc-eEEEEeeCC-----------EEEEEeeccccccCc-ccccceeEEehhh---------
Q 002197 730 FIDMYLRLPGIPTNGQLTESD-CIRVRICEG-----------RFALLIREPLREGNF-IIQPKVDFDISIS--------- 787 (954)
Q Consensus 730 y~~~Y~~~~~l~~~~~~~~~~-~irir~~~~-----------~~~l~~~~~~~d~~~-~~~~~~~~~v~~~--------- 787 (954)
..++||..| ++.++..+ +||||..++ ++.+|+|+|..++.. ..+++.+.++...
T Consensus 32 ~~~~y~dt~----~~~l~~~~~~lr~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 107 (210)
T 3v85_A 32 QRNTFFDTP----KNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESP 107 (210)
T ss_dssp EEEEEEECT----TCHHHHTTEEEEEEEEEC------CCCCCEEEEEEEEEEEEETTEEEEEEEEEEECHHHHHHHHHCG
T ss_pred EEEEEEeCC----CHHHHhCCcEEEEEEeCCccceeccCCCcceEEEEecCCcCCCCceeEEEEeecCChhHHHHhhhhh
Confidence 468899888 77777766 999998655 677999998776654 4456677666322
Q ss_pred ----------------HHHHHHHhCceeeeeeeeeeEEeecCcEEEEEecccCCCCceEEE--eccc----HHHHHHHHh
Q 002197 788 ----------------TVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDAPSPYLQI--KGVD----KEAVAAAGS 845 (954)
Q Consensus 788 ----------------~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~----~~~v~~~~~ 845 (954)
+.+++..+|+.....+++.|..|..++.+|++|.....+..++|| ...+ ++.+.++++
T Consensus 108 ~~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~~~ELEle~~d~e~~~~~~~~lL~ 187 (210)
T 3v85_A 108 AKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLT 187 (210)
T ss_dssp GGGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 122345689999999999999999999999999998664477776 4333 566788889
Q ss_pred hcCCCCCccchh-HHHHHHhhcc
Q 002197 846 TLKLDGSYTTKS-YLQIILEKLP 867 (954)
Q Consensus 846 ~l~~~~~~~~~s-yle~~~~~~~ 867 (954)
++||+=.+.+.| |--.+-.|||
T Consensus 188 ~~gI~~~~s~~sK~arf~~~klp 210 (210)
T 3v85_A 188 EEKIEFSNSDMTKFAVFRSGKLP 210 (210)
T ss_dssp HTTCCEEECCSCHHHHHHHTSCC
T ss_pred HcCCCcCcCcccHHHHHhhccCC
Confidence 999976555433 3224455554
No 215
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.59 E-value=1.9e-05 Score=78.28 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=33.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
+.+|+|+|++||||||+++.|+..+++.+++.|++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHH
Confidence 3579999999999999999999999999999998765
No 216
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.58 E-value=5.4e-05 Score=86.81 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=34.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf 551 (954)
..+.+|.|+|++||||||+|+.|++.+++.+|+.|++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 4577899999999999999999999999999999987
No 217
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.52 E-value=1.6e-05 Score=81.49 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=22.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
+|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999884
No 218
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.52 E-value=7.6e-05 Score=78.88 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=34.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~y~ 98 (954)
++.+|+|.|++||||||+++.|++.+|...++.|++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~ 63 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLR 63 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHH
Confidence 46799999999999999999999999998889888644
No 219
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.52 E-value=0.00013 Score=75.27 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=78.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC---CeEEecccccc-cccc-CC-CCCcc---------cHHHHHHHHHhhhcC
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRV-GVDE-GN-DLDSI---------DFDALVQNLQDLTEG 124 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg---~~VIs~Dd~y~-~~~~-~~-~p~s~---------D~~~l~~~L~~l~~g 124 (954)
..+++|+|+|-+||||+|+|+.|.+.+| +.++++-+--+ .... .+ ..+.+ -...+...-..++..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999998785 78899877322 1111 00 00000 011111111111110
Q ss_pred CccccccchhhhhccccccccccCCCcEEEEEecccch--hhhhcCC-C--EEEEEEcCHHHHHHHHHHhccCCccCHHH
Q 002197 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLL-D--IRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (954)
Q Consensus 125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~ll~--~~l~~~~-D--~~I~Vda~~~~rl~Rri~RD~~~r~~~e~ 199 (954)
++ -.+.... ......+++||+|.--.+ ..++..+ . ..|.|.+++++|..|...+. ....+.
T Consensus 89 d~---~~~~~~~--------~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~-~~~Dd~-- 154 (202)
T 3ch4_B 89 DP---GFFCRKI--------VEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFT-PGVDDA-- 154 (202)
T ss_dssp CT---TTTHHHH--------SBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCC-TTTTTS--
T ss_pred Cc---hHHHHHH--------HHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcc-cccccc--
Confidence 00 0000001 111133589999998876 3444433 2 36899999999988832111 001111
Q ss_pred HHHhhchhhhhccCCCcCcccEEEECCC
Q 002197 200 LIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 200 ~~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
.-+.-+.+. ..||++|.|+-
T Consensus 155 -------esE~gL~~~-~~~D~vI~Ndg 174 (202)
T 3ch4_B 155 -------ESECGLDNF-GDFDWVIENHG 174 (202)
T ss_dssp -------HHHHTTTTC-CCCSEEEEECS
T ss_pred -------ccccCCCCC-CcCCEEEEeCC
Confidence 112223334 68999999984
No 220
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.50 E-value=0.00017 Score=74.53 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=69.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC---CceeccccccchhhhccccCCCC---------CcccHHHHHHHHHHHHc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQVKDFKYDDF---------SSLDLSLLSKNISDIRN 582 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg---~~vIs~Ddfy~~~~~~~~n~d~p---------~t~D~~lL~~~L~~L~~ 582 (954)
..+.+|||+|.+||||+|+|+.|.+.+| +.+++|-|--+.......+.+.. ..+ ...+...-..++.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~-R~~m~~~g~~~R~ 87 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAF-RKDMIRWGEEKRQ 87 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSH-HHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHH-HHHHHHHHHHHHh
Confidence 4678999999999999999999999885 77899988666422222221100 001 1112211122221
Q ss_pred CCceecccc-cccccccCCccceeeccCccEEEEEeecccc--hhhhhcCC---eEEEEEcChhHHHHHH
Q 002197 583 GRRTKVPIF-DLETGARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLD---LWIAVVGGVHSHLISR 646 (954)
Q Consensus 583 g~~v~~P~y-D~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~--~~l~~~~D---~~I~v~~~~d~rl~Rr 646 (954)
- -|.| -..... . ...+++||+|+--.+ ..+++.+. ..|.|.++.++|..|.
T Consensus 88 ~----d~~~~~~~~~~-----~----~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 88 A----DPGFFCRKIVE-----G----ISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp H----CTTTTHHHHSB-----T----CCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred c----CchHHHHHHHH-----h----cCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 0 0110 000000 0 123699999999876 34555442 3589999999999884
No 221
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.50 E-value=7.3e-06 Score=84.10 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
+|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999885
No 222
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=2.3e-05 Score=82.61 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=33.8
Q ss_pred cCCeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhhhhccc
Q 002197 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 677 (954)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~Iep 677 (954)
..|..||+++|.+..+.|...|.... .......+...+...|..+..+
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~--e~~~~~~~~~~v~~~y~~~~~~ 196 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREE--EKGIELAYLEQLHGQHEAWLIH 196 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTT--TTTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcc--cccCCHHHHHHHHHHHHHHHhh
Confidence 57999999999999999977664211 1111135677788888887664
No 223
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.46 E-value=0.00033 Score=70.52 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=31.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCC-eEEeccccccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVG 99 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~-~VIs~Dd~y~~ 99 (954)
.+|+|+|++||||||+++.|+..++. ..++.|++...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~ 40 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM 40 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh
Confidence 57999999999999999999987765 67888887553
No 224
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.44 E-value=3.7e-05 Score=77.50 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
.+|+|+||+||||||+++.|...+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988653
No 225
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.39 E-value=0.0011 Score=66.38 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=30.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCe--EEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~--VIs~Dd~y~ 98 (954)
+..+|+|+|++||||||+++.|+..++.. .++.|++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 45789999999999999999999876544 567777643
No 226
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.38 E-value=0.00036 Score=71.28 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=63.0
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCC-ceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccccccc
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~-~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr 598 (954)
|.|+||||||||||++.|.+.+.- ..++.=.-=++...++.+..+.--.+.+. +-..+.+|+-+++-.|. |..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~e---F~~~i~~g~flE~~~~~---g~~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDE---FKSMIKNNEFIEWAQFS---GNY 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH---HHHHHHTTCEEEEEEET---TEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHH---HHHHHHcCCEEEEEEEc---Cce
Confidence 447999999999999999876531 11111000011111111111111122222 23344556666554443 111
Q ss_pred CCc--cce-eeccCccEEEEEeecccchhhhhcC---CeEEEEEcChhHHHHHHHhc
Q 002197 599 SGF--KEL-EVSEDCGVIIFEGVYALHPEIRKSL---DLWIAVVGGVHSHLISRVQR 649 (954)
Q Consensus 599 ~~~--~~~-~~~~~~dVVIvEG~~~~~~~l~~~~---D~~I~v~~~~d~rl~Rri~R 649 (954)
.+. ... ........+|+++-..+...++..+ -..||+..|....|.+|+..
T Consensus 78 YGt~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~ 134 (186)
T 1ex7_A 78 YGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEG 134 (186)
T ss_dssp EEEEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHH
T ss_pred eeeecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHh
Confidence 111 011 1123357888888766665666543 25789988877777777654
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.38 E-value=0.00038 Score=71.13 Aligned_cols=22 Identities=45% Similarity=0.741 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 002197 65 VGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~L 86 (954)
|.|+||||||||||++.|.+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7799999999999999998765
No 228
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.37 E-value=0.00025 Score=84.06 Aligned_cols=128 Identities=14% Similarity=0.162 Sum_probs=70.0
Q ss_pred cCCCCccchhhhHHHHHHHHHHHH-cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----CceeccccccchhhhccccC
Q 002197 489 PMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKY 562 (954)
Q Consensus 489 ~~~~~l~~~e~~~~~i~~i~~l~~-~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~~~~~~~~n~ 562 (954)
..|+++...+. .+.+++... ....+.+|.++|++||||||+|+.|++.++ +.+++.|.+.... ..+..|
T Consensus 347 ~~p~~~~r~eV----~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l-~~~~~f 421 (546)
T 2gks_A 347 KLPEWFTRPEV----AEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL-SRGLGF 421 (546)
T ss_dssp CCCTTTSCHHH----HHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT-CTTCCS
T ss_pred CCCccccchhH----HHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh-cccccc
Confidence 34666654433 222333321 223578999999999999999999999875 3677777653210 011111
Q ss_pred CCCCcccHHHHHHHHHHHHcCCceecccccccccccCCccceeeccCccEEEEEeecccc---hhhhhcC---C-eEEEE
Q 002197 563 DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKSL---D-LWIAV 635 (954)
Q Consensus 563 d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~---~~l~~~~---D-~~I~v 635 (954)
. ..+... .+..+.. +.. . .......+|+++...+. ..+++.+ | ..||+
T Consensus 422 ~---~~er~~---~l~~i~~---~~~--------------~--~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L 476 (546)
T 2gks_A 422 S---KEDRIT---NILRVGF---VAS--------------E--IVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFV 476 (546)
T ss_dssp S---HHHHHH---HHHHHHH---HHH--------------H--HHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEE
T ss_pred c---HHHHHH---HHHHHHH---HHH--------------H--HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 1 111111 1111110 000 0 01123578888766543 2344444 6 88999
Q ss_pred EcChhHHHHHH
Q 002197 636 VGGVHSHLISR 646 (954)
Q Consensus 636 ~~~~d~rl~Rr 646 (954)
+++.+.++.|.
T Consensus 477 ~~~~e~~~~Rl 487 (546)
T 2gks_A 477 DAPVEVCEERD 487 (546)
T ss_dssp ECCGGGHHHHC
T ss_pred eCCHHHHHHHh
Confidence 99999998875
No 229
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.34 E-value=0.00033 Score=70.44 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=29.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddf 551 (954)
.++.+|.|.|++||||||+++.|+..++ +.+++.|.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3568899999999999999999999874 345666655
No 230
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.31 E-value=0.00085 Score=70.53 Aligned_cols=47 Identities=6% Similarity=-0.076 Sum_probs=34.2
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCcc-CHHHHHHhhchhhhhccCC
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDSIFPLFRKHIEP 214 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~~r~-~~e~~~~~v~p~~~~~Iep 214 (954)
..|.+||+++|+++++.|...|...... ...++.+++...|..++.+
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~ 196 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIH 196 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhh
Confidence 5799999999999999998887543222 1245666777777776654
No 231
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.30 E-value=0.00066 Score=80.04 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=34.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecccccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV 100 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~y~~~ 100 (954)
..+.+|.++|.+||||||+|+.|++.|+ +.+++.|++....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 4568999999999999999999999884 4568999875543
No 232
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.30 E-value=0.00012 Score=80.70 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=34.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc--cch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf--y~~ 554 (954)
+.+|.|+||+||||||||..|++.++..+||+|++ |+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~ 42 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRG 42 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceee
Confidence 56788999999999999999999999999999998 764
No 233
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.28 E-value=0.00013 Score=76.87 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=37.2
Q ss_pred cCCCEEEEEEcCHHHHHHHHHHhccCCc-cC-HHHHHHhhchhhhhccCCCcCcccEEEECC
Q 002197 167 SLLDIRVAVVGGVHFSLISKVQYDIGDS-CS-LDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 167 ~~~D~~I~Vda~~~~rl~Rri~RD~~~r-~~-~e~~~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
...|++||+|+|+++.+.|...|....+ .. ..++.+++...|..+.+.. ...-++|+.+
T Consensus 150 ~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~ 210 (227)
T 3v9p_A 150 FQPDLTVLFDVPPQIASARRGAVRMPDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSS 210 (227)
T ss_dssp CCCSEEEEEECCSSCGGGTTTCCCCC---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCC
Confidence 3479999999999999999887753333 22 3456666666666543221 1234667766
No 234
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.26 E-value=0.00013 Score=74.15 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=30.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEeccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMEN 95 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs~Dd 95 (954)
++.+|+|+|++||||||+++.|++.+ |+.+++++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 35689999999999999999999998 577887654
No 235
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.26 E-value=0.00058 Score=72.36 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=32.9
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCcc--CHHHHHHhhchhhhhccCCCcCcccEEEECC
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~~r~--~~e~~~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
..|++||+++|+++.+.|...|....+. ...++.+++...|..+.+... . .++|+++
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~la~~~~-~-~~vIDa~ 212 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERYLELANSDD-S-VVMIDAA 212 (236)
T ss_dssp CCSEEEEEECCHHHHHHC-----CCCTTTTSCHHHHHHHHHHHHHHHHHCT-T-EEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHHHCC-C-EEEEeCC
Confidence 5799999999999999998888543331 123555555555554332111 2 6778876
No 236
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.23 E-value=0.00077 Score=69.22 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEec
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISM 93 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L---g~~VIs~ 93 (954)
.|.|-|+.||||||.++.|++.| |..++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 58899999999999999999887 5666654
No 237
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.21 E-value=0.00019 Score=78.85 Aligned_cols=41 Identities=37% Similarity=0.607 Sum_probs=36.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc--cch
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf--y~~ 554 (954)
...|.+|.|+||+||||||||..|++.++..+||.|++ |+.
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~ 49 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKG 49 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccccc
Confidence 34567899999999999999999999999999999985 654
No 238
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.18 E-value=0.00019 Score=81.63 Aligned_cols=38 Identities=29% Similarity=0.515 Sum_probs=34.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceecccc--ccch
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd--fy~~ 554 (954)
+.+|+|+||+||||||||..|++.++..+||+|+ +|+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~ 41 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKD 41 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSS
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecc
Confidence 4588999999999999999999999999999999 6775
No 239
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.17 E-value=0.00018 Score=79.66 Aligned_cols=36 Identities=36% Similarity=0.671 Sum_probs=33.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceecccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy 552 (954)
+.+|.|+||+||||||+|..|++.+++.+|++|++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 468999999999999999999999999999999983
No 240
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Probab=97.17 E-value=0.0013 Score=65.03 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=73.1
Q ss_pred hcccccccCCCCCCCCCcCCcce-EEEEeeCCEEEEEeeccccccCcccccceeEEehhhHHHHHHHhCceeeeeeeeee
Q 002197 729 NFIDMYLRLPGIPTNGQLTESDC-IRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASA 807 (954)
Q Consensus 729 ~y~~~Y~~~~~l~~~~~~~~~~~-irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~~~l~~lg~~~~~~~~~~~ 807 (954)
...+.||..+ .... +|||..+++|+||+|++. -++|.++|.+|+.....-|+++. .+..|+|.|
T Consensus 24 ~i~QgYl~~~---------~~~~~vRvR~~g~~~~lT~Kg~~----g~~R~E~E~~I~~~~~~~ll~~~--~~~~I~K~R 88 (153)
T 2fbl_A 24 PLRQGYLTTP---------TDSIELRLRQQGTEYFMTLKSEG----GLSRQEYEIQIDVTQFEMLWPAT--EGRRVEKTR 88 (153)
T ss_dssp EEEEEESSCT---------TSSSEEEEEEETTEEEEEEEC----------CEEEEEECHHHHHHHGGGG--TTSEEEEEE
T ss_pred EEEEEEecCC---------CCceEEEEEEeCCEEEEEEEcCC----CceeEEEEEECCHHHHHHHHhhC--CCCEEEEEE
Confidence 3567888654 1235 999999999999999998 58899999999888888888765 478999999
Q ss_pred EEeecCc-EEEEEecccCCCC--ceEEEecccHHH
Q 002197 808 FIYQDGK-ILIEVDHLQDAPS--PYLQIKGVDKEA 839 (954)
Q Consensus 808 ~~~~~~~-~~~~~d~~~~~~~--~~~~~~~~~~~~ 839 (954)
..|.-++ .++++|..+|-.. .++||.-.+-++
T Consensus 89 y~~~~~~~~~~evD~f~g~~~gL~~aEvE~~~e~e 123 (153)
T 2fbl_A 89 YSGKLPDGQLFELDVFAGHLSPLMLVEVEFLSEDA 123 (153)
T ss_dssp EEEECTTCCEEEEEEECGGGTTCEEEEEEESSHHH
T ss_pred EEEEcCCcEEEEEEEECCcCCCeEEEEEEecCccc
Confidence 9999999 9999999987433 578887666543
No 241
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.16 E-value=0.00034 Score=82.96 Aligned_cols=39 Identities=36% Similarity=0.345 Sum_probs=31.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC------CeEEecccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRV 98 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg------~~VIs~Dd~y~ 98 (954)
.+..+|+|+|++||||||+++.|+..++ +.+++.|.+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 3558999999999999999999999884 34577777643
No 242
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.13 E-value=0.0011 Score=68.89 Aligned_cols=59 Identities=7% Similarity=-0.008 Sum_probs=37.1
Q ss_pred cCCCEEEEEEcCHHHHHHHHHHhccCCccC--HHHHHHhhchhhhhccCCCcCcccEEEECC
Q 002197 167 SLLDIRVAVVGGVHFSLISKVQYDIGDSCS--LDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 167 ~~~D~~I~Vda~~~~rl~Rri~RD~~~r~~--~e~~~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
...|++||+++|+++.+.|...|....+.. ..++.+++...|....+.. ...-++|+++
T Consensus 130 ~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~ 190 (213)
T 4edh_A 130 LRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAG 190 (213)
T ss_dssp CCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 457999999999999999988875333311 2355555555555433211 1235677776
No 243
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.10 E-value=0.00072 Score=81.07 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=30.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---CCceeccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLE 549 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L---g~~vIs~D 549 (954)
++.+|.|+|.+||||||+|+.|++.| |..++.+|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 57899999999999999999999998 88877776
No 244
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.09 E-value=0.00023 Score=79.18 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddf 551 (954)
++.+|.|.||+||||||||..|++.++..+||+|++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 456888999999999999999999999999999988
No 245
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.04 E-value=0.00015 Score=76.32 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=25.6
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhchhhhhccCCCcCcccEEEECCC
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~~r~~~e~~~~~v~p~~~~~Iep~~~~ADiII~N~~ 227 (954)
..|++||+++|+++.+.|. .||..+. ...++.+++...|....... ....++|+++.
T Consensus 145 ~PDl~I~Ldv~~e~~~~Ri-~rdr~E~-~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~~ 201 (223)
T 3ld9_A 145 YPDITFIIDVDINESLSRS-CKNGYEF-ADMEFYYRVRDGFYDIAKKN-PHRCHVITDKS 201 (223)
T ss_dssp CCSEEEEEECC------------------CHHHHHHHHHHHHHHHHHC-TTTEEEEESSC
T ss_pred CCCeEEEEeCCHHHHHHHh-ccCcccc-chHHHHHHHHHHHHHHHHHC-CCCEEEEcCCC
Confidence 5799999999999999997 5554332 12345555555555433222 23567888873
No 246
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.00037 Score=69.64 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=30.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---CCceecccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L---g~~vIs~Dd 550 (954)
+..+|+|+|++||||||+++.|+..+ |..++.+|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 45789999999999999999999988 877776653
No 247
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.02 E-value=0.00024 Score=72.06 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-CCceecccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLES 550 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L-g~~vIs~Dd 550 (954)
++.+|+|+|++||||||+++.|++.+ |..+++++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 45789999999999999999999988 577777654
No 248
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.01 E-value=0.00024 Score=75.03 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=34.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
+|.+|+|.||+||||||+++.|++.+|...++.|++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 467999999999999999999999999888888887664
No 249
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.00 E-value=0.0026 Score=66.16 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=37.6
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCcc--CHHHHHHhhchhhhhccCCCcCcccEEEECC
Q 002197 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (954)
Q Consensus 168 ~~D~~I~Vda~~~~rl~Rri~RD~~~r~--~~e~~~~~v~p~~~~~Iep~~~~ADiII~N~ 226 (954)
..|++||+++|+++.+.|...|...++. ....+.+++...|..+.+.. ..-.+|+++
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~ 190 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD--KSIHTIDAT 190 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTC--TTEEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHC--CcEEEECCC
Confidence 5799999999999999999888543331 23456666666666644221 223566665
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.95 E-value=0.0041 Score=64.89 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=24.1
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 58 ~~~~~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
..++-.+++|.||+|||||||.+.|...+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344557999999999999999999988764
No 251
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.87 E-value=0.0031 Score=65.17 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=25.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh--CCeEEe
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI--GCTLIS 92 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L--g~~VIs 92 (954)
..|.|-|+.||||||.++.|++.| |..++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 578999999999999999999988 444443
No 252
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.84 E-value=0.00044 Score=69.44 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=30.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC--ceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC--EVVSLESYF 552 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~--~vIs~Ddfy 552 (954)
.+..+|+|.||+||||||+++.|+..++. ..++.|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 34578999999999999999999886643 366777764
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.77 E-value=0.004 Score=63.56 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=22.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
.+|+|.||+||||||+.+.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999988653
No 254
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.72 E-value=0.00077 Score=69.35 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC------Cceecccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYF 552 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg------~~vIs~Ddfy 552 (954)
...+.+|.|.|++||||||+++.|+..++ +.+++.|++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 34567899999999999999999999875 5566666654
No 255
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.70 E-value=0.0014 Score=69.36 Aligned_cols=57 Identities=9% Similarity=-0.077 Sum_probs=33.4
Q ss_pred cCCeEEEEEcChhHHHHHHHhcCccccccccc--hhhHHhhhcchhhhhcccccCcccEEEcCC
Q 002197 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~--~~q~~~~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
..|+.||+++|.++.+.|...|... ...+ ...+...+...|..+..... . .++|+++
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R~~~---dr~E~~~~~~~~rv~~~y~~la~~~~-~-~~vIDa~ 212 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGRGEL---DRIEKMDISFFERARERYLELANSDD-S-VVMIDAA 212 (236)
T ss_dssp CCSEEEEEECCHHHHHHC-----CC---CTTTTSCHHHHHHHHHHHHHHHHHCT-T-EEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCc---chhhhhHHHHHHHHHHHHHHHHHHCC-C-EEEEeCC
Confidence 4699999999999999998777421 1112 13566677777777654221 1 5666654
No 256
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.68 E-value=0.00067 Score=68.27 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=30.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC-ceeccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFK 553 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~-~vIs~Ddfy~ 553 (954)
.+|+|.||+||||||+++.|+..++. ..++.|++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 47899999999999999999987754 6778887754
No 257
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.012 Score=66.94 Aligned_cols=59 Identities=31% Similarity=0.443 Sum_probs=43.7
Q ss_pred cccchhh--hHHHHHHHHHHHH----------h--cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 37 VHASFDH--GYYLLVKSIQELR----------E--KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 37 ~~~s~d~--~~~~lv~~i~~~~----------~--~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
+.++|+| ++....+.+++.. . ....|.=|.+.||+|+|||++|+++|..+|++++..+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 4578888 5565665555432 1 23345679999999999999999999999998876654
No 258
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.59 E-value=0.0013 Score=78.27 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=31.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC----C--ceeccccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG----C--EVVSLESYFK 553 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg----~--~vIs~Ddfy~ 553 (954)
.++.+|.|+|++||||||+|+.|++.|+ . .+++.|.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 4568999999999999999999999875 2 4556666543
No 259
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.49 E-value=0.0013 Score=69.76 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=32.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccch
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~~ 554 (954)
++|||+|++||||||+|+.|++.+|+.++++.+-.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~ 38 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD 38 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHH
Confidence 6899999999999999999999899998887765543
No 260
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.41 E-value=0.0051 Score=63.31 Aligned_cols=120 Identities=9% Similarity=0.086 Sum_probs=58.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC-ceeccccccchhhhccccCCCCCcccHHHHHHHHHHHHcCCceeccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~-~vIs~Ddfy~~~~~~~~n~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~ 594 (954)
+..+|+|.||||||||||++.|...+.. ...+.-.-=++...++.+..+..-.|.+.+.+.+ ..+.-+..-.|.-.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~~n 94 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNI---SANEFLEFGSYQGN 94 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhh---hhhhhhhhhhhhce
Confidence 3457889999999999999999987641 1111100000000111111112224444444433 34443433322111
Q ss_pred -ccccCCccceeeccCccEEEEEeecccchhhhhc-CC-eEEEEEcCh
Q 002197 595 -TGARSGFKELEVSEDCGVIIFEGVYALHPEIRKS-LD-LWIAVVGGV 639 (954)
Q Consensus 595 -~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~-~D-~~I~v~~~~ 639 (954)
-|.... ..........++|++.-..+-..++.. .+ ..|||..|.
T Consensus 95 ~YGt~~~-~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps 141 (197)
T 3ney_A 95 MFGTKFE-TVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTD 141 (197)
T ss_dssp EEEEEHH-HHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECC
T ss_pred ecccchh-hHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCC
Confidence 111000 001123456889999866655555433 23 688888664
No 261
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.025 Score=64.67 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=44.4
Q ss_pred Ccccchhh--hHHHHHHHHHHHH----------h--cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 36 PVHASFDH--GYYLLVKSIQELR----------E--KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 36 ~~~~s~d~--~~~~lv~~i~~~~----------~--~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
.+.++|++ ++....+.|.+.. . ....|.=|.+.||+|+|||++|+++|..+|++++..+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~ 249 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG 249 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH
Confidence 45678888 5555665555432 1 12345779999999999999999999999988876654
No 262
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.31 E-value=0.0043 Score=67.52 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=30.3
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
..+..|.|.|++|+||||+|+.++..++..++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 44567899999999999999999999998877655
No 263
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.048 Score=59.99 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=26.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh-CCeEEe
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS 92 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs 92 (954)
+.-|.|.||+|+|||++|+.++..+ +..++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 4678899999999999999999988 665544
No 264
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.25 E-value=0.0037 Score=73.28 Aligned_cols=59 Identities=7% Similarity=0.118 Sum_probs=42.1
Q ss_pred ccCCCCccchhhhHHHHHHHHHHHH-cCCCCEEEeeeCCCCccHHHHHHHHHHHhCC-------ceecccc
Q 002197 488 VPMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANIVGC-------EVVSLES 550 (954)
Q Consensus 488 ~~~~~~l~~~e~~~~~i~~i~~l~~-~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~-------~vIs~Dd 550 (954)
...|+++...|. .+.+++... .....++|.++|.+||||||+|+.|++.|+. .+++.|+
T Consensus 369 ~~~P~~f~rpeV----~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 369 GEIPEWFSYPEV----VKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCCCTTTSCHHH----HHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred CCCCccccChhh----HHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 456788877765 223333331 2335688999999999999999999999985 4666666
No 265
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.024 Score=65.35 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=43.5
Q ss_pred cccchhh--hHHHHHHHHHHHH----------h--cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 37 VHASFDH--GYYLLVKSIQELR----------E--KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 37 ~~~s~d~--~~~~lv~~i~~~~----------~--~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
+.++|+| ++....+.|++.. . ....|.=|.+.||+|+|||++|+++|..+|++++..+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~ 276 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG 276 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh
Confidence 4577888 5555555555431 1 23456789999999999999999999999998876553
No 266
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.20 E-value=0.013 Score=68.07 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=27.6
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
.++.+|.++|.+||||||+++.|++.++...+++|
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~ 71 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTR 71 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCce
Confidence 45689999999999999999999998863333333
No 267
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.18 E-value=0.0037 Score=73.33 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHHHHh-cCCCcEEEEEECCCCCcHHHHHHHHHHHhCC-------eEEeccc
Q 002197 48 LVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-------TLISMEN 95 (954)
Q Consensus 48 lv~~i~~~~~-~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~-------~VIs~Dd 95 (954)
+.+.+.+... +.....+|.++|.+||||||+|+.|++.|+. .+++.|+
T Consensus 380 V~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 380 VVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred hHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4444444432 2334589999999999999999999999985 5666666
No 268
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.16 E-value=0.0031 Score=65.02 Aligned_cols=39 Identities=28% Similarity=0.194 Sum_probs=32.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc--ccccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD 101 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~--y~~~~ 101 (954)
...|.|+|++||||||+|..|++..+ .+|+.|.. |+..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~ 74 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDE 74 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCC
Confidence 36799999999999999999998765 99999984 55443
No 269
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.13 E-value=0.025 Score=63.14 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=31.4
Q ss_pred hcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 002197 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN 95 (954)
Q Consensus 57 ~~~~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd 95 (954)
...++..+|+|+|.+|+||||++..|+..+ | +.+++.|-
T Consensus 74 ~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 74 PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 345678999999999999999999998776 3 56677773
No 270
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.12 E-value=0.0035 Score=64.75 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=29.6
Q ss_pred CCeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhhhhcc
Q 002197 629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIE 676 (954)
Q Consensus 629 ~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~Ie 676 (954)
-|+.||+++|++..+.|...|.........+...|...++..|.++..
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~~~v~~~Y~~l~~ 172 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIH 172 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHHHHHHHHHHHHHH
Confidence 489999999999999997766422111111123566677778877654
No 271
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.12 E-value=0.0064 Score=64.17 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=28.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
+.-|.|.|++|+||||+|+.++..++.+++..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~ 77 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 77 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 345889999999999999999999987766554
No 272
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.11 E-value=0.006 Score=64.09 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=27.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEec
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~ 93 (954)
.+.-|.|.|++|+||||+|+.+++.++.+++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 345688999999999999999999999776543
No 273
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.11 E-value=0.0057 Score=65.38 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=28.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEec
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~ 93 (954)
..+.-|.|.|++|+||||+|+.++..++..++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3455689999999999999999999999876554
No 274
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.015 Score=66.74 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=43.7
Q ss_pred Ccccchhh--hHHHHHHHHHHHH----------h--cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 36 PVHASFDH--GYYLLVKSIQELR----------E--KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 36 ~~~~s~d~--~~~~lv~~i~~~~----------~--~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
.+.++|+| ++....+.|.+.. . ....|.=|.+.||+|+|||++|+++|..+|++++..+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 44577888 5555555554432 1 23345679999999999999999999999998876654
No 275
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.87 E-value=0.0034 Score=63.32 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.++|.||+|||||||.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999886
No 276
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.85 E-value=0.004 Score=64.16 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=31.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
...|.|+||+||||||+|..|++..+ .+|+.|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 45688999999999999999998766 8999997644
No 277
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.82 E-value=0.0028 Score=67.50 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=28.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEe
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS 92 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs 92 (954)
.++++|+|.|++||||||+++.|++.+ ++.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 457899999999999999999999998 566664
No 278
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.77 E-value=0.0046 Score=67.20 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=30.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
.+.|..|.+.||+|+|||++|+.+++.+|..++.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345778899999999999999999999997766543
No 279
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.75 E-value=0.0049 Score=61.87 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.+.+|+|+|++||||||++..|...|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998875
No 280
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.75 E-value=0.011 Score=63.61 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=28.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
.+.-|.|.|++|+||||+|+.++..+++.++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~ 86 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNIS 86 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence 3567899999999999999999999997765443
No 281
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.013 Score=67.30 Aligned_cols=59 Identities=29% Similarity=0.385 Sum_probs=42.6
Q ss_pred Ccccchhh--hHHHHHHHHHHHH----------h--cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 36 PVHASFDH--GYYLLVKSIQELR----------E--KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 36 ~~~~s~d~--~~~~lv~~i~~~~----------~--~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
.+.++|++ ++....+.|.+.. . ....|.=|.+.||+|+|||++|+++|..+|++++..+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 44677887 4555555444432 1 2334678999999999999999999999998876654
No 282
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.64 E-value=0.014 Score=64.13 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=28.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
+.-|.|.|++|+|||++|+.+++.++..++..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 467999999999999999999999998776554
No 283
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.015 Score=66.92 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=44.0
Q ss_pred Ccccchhh--hHHHHHHHHHHHH----------h--cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 36 PVHASFDH--GYYLLVKSIQELR----------E--KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 36 ~~~~s~d~--~~~~lv~~i~~~~----------~--~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
.+.++|++ ++....+.|.+.. . ..+.|.=|.+.||+|+|||++|+++|..+|++++..+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 45667888 5555555554431 1 23346789999999999999999999999988776654
No 284
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.60 E-value=0.0033 Score=66.89 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh-CCceec
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVS 547 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L-g~~vIs 547 (954)
.++.+|.|.|++||||||+++.|++.+ ++.+++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 467899999999999999999999998 555664
No 285
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.59 E-value=0.0063 Score=61.34 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeE
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTL 90 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~V 90 (954)
.++|+|++||||||+.+.|+..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 589999999999999999999887443
No 286
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.55 E-value=0.0067 Score=60.89 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
++.+|+|+|++||||||++..|...|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998876
No 287
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.52 E-value=0.0053 Score=62.68 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.+|+|.||+|||||||.+.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999987653
No 288
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.52 E-value=0.0056 Score=72.09 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=32.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddfy~ 553 (954)
..+.+|.+.|.+||||||+|+.|++.++ +.+++.|++-.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 4578899999999999999999999884 34688888543
No 289
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.51 E-value=0.0065 Score=66.01 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=30.3
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
.+.|..|.+.||+|+|||++|+.+++.+|.+++..+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345678899999999999999999999997765544
No 290
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.50 E-value=0.0066 Score=62.15 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.-+++|.||+|||||||.+.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34789999999999999999998764
No 291
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.47 E-value=0.0051 Score=61.20 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=26.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~ 96 (954)
+.-+++|.|++||||||+++.+. .|..+++.|.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~ 41 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFC 41 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHH
Confidence 34689999999999999999863 35667777654
No 292
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.46 E-value=0.014 Score=60.48 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEe
Q 002197 47 LLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (954)
Q Consensus 47 ~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs 92 (954)
.++..+.......++...+.|.||+|+||||+|..|++.++..+++
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 3456666666555555679999999999999999999988655554
No 293
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.44 E-value=0.0072 Score=63.05 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
....+++|.||+|||||||.+.|...+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3446889999999999999999988764
No 294
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.43 E-value=0.017 Score=59.72 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 504 i~~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
+..++....+.++..-+.|.||+|+||||+|..|++.++-.+++.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f 89 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF 89 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 455556665544445688999999999999999999886555543
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.40 E-value=0.0067 Score=60.36 Aligned_cols=33 Identities=36% Similarity=0.373 Sum_probs=24.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceecccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd 550 (954)
+.-+++|.||+|||||||++.+. .+..+++.|.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~ 40 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDF 40 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHH
Confidence 45689999999999999999853 2344555553
No 296
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.38 E-value=0.017 Score=65.13 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=31.8
Q ss_pred HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCceec
Q 002197 507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (954)
Q Consensus 507 i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs 547 (954)
++.....-+.+.+|+|.||+||||||+++.|+..++..+++
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 33333345566799999999999999999999988766555
No 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.37 E-value=0.014 Score=58.00 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=27.5
Q ss_pred HHHHHHHHHcC--CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 504 VQAIQALLENK--GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 504 i~~i~~l~~~~--~~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+..++....+. .....++|.||+||||||+++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 23 LLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444432 234578999999999999999998865
No 298
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.34 E-value=0.02 Score=56.83 Aligned_cols=39 Identities=23% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcC--CCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 48 LVKSIQELREKK--GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 48 lv~~i~~~~~~~--~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
.++.+.....+- .....++|.|++||||||+++.++..+
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 22 ALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 444444444322 234678999999999999999998876
No 299
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.32 E-value=0.026 Score=60.02 Aligned_cols=35 Identities=37% Similarity=0.544 Sum_probs=30.1
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEec
Q 002197 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (954)
Q Consensus 59 ~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~ 93 (954)
...+.-|.|.|++|+|||++|+.+++.++++++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 44567899999999999999999999999876554
No 300
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.31 E-value=0.022 Score=64.32 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=31.1
Q ss_pred hcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEec
Q 002197 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (954)
Q Consensus 57 ~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~ 93 (954)
-.-+...+|+|.|++||||||+++.|+..++..++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~ 200 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 200 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEE
Confidence 3455567999999999999999999999888777663
No 301
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.30 E-value=0.016 Score=63.23 Aligned_cols=44 Identities=18% Similarity=0.387 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 505 ~~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
..++........+.++.+.||+|+||||+|+.+++.++..++.+
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 44445555555567788899999999999999999987655544
No 302
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.27 E-value=0.014 Score=63.43 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=29.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
..+..|.|.||+|+||||+|+.++..++...+..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 44567889999999999999999999987766544
No 303
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.23 E-value=0.0078 Score=62.42 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=22.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
..+++|.||+|||||||++.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998866
No 304
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.23 E-value=0.027 Score=55.14 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=22.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
+..|.|.|++|+||||+++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999886
No 305
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.21 E-value=0.01 Score=60.71 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
--+++|.|++||||||+.+.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998764
No 306
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.18 E-value=0.024 Score=62.11 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 45 YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 45 ~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
...+...+.........+..|.|.|++|+|||++|+.+++.++..++..+
T Consensus 38 ~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 38 KKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp HHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 33344444433333444556899999999999999999999987766544
No 307
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.17 E-value=0.021 Score=55.96 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.+..|.|.|++|+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999876
No 308
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.16 E-value=0.01 Score=63.86 Aligned_cols=30 Identities=43% Similarity=0.655 Sum_probs=25.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
|+|.||+|||||||++.|+..++...+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 899999999999999999998886555443
No 309
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.15 E-value=0.013 Score=61.90 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=26.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
+.-|.|.||+|+||||+|+.|+..++..++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 44578999999999999999999988665544
No 310
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.14 E-value=0.029 Score=61.89 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=27.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
..+-.++|.||+|+||||+++.++..+++.+.
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 34456899999999999999999999987543
No 311
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.13 E-value=0.013 Score=64.33 Aligned_cols=37 Identities=24% Similarity=0.535 Sum_probs=29.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddf 551 (954)
+.+.+|+|.|++||||||++..|+..+ | +.++..|-|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 356899999999999999999999876 2 445666644
No 312
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.13 E-value=0.018 Score=62.79 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 46 ~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
...++.+.........+.++.+.|++|+||||+++.+++.++..++..+
T Consensus 32 ~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 32 AFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 3455566555555556678889999999999999999999987776554
No 313
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.10 E-value=0.014 Score=62.82 Aligned_cols=31 Identities=42% Similarity=0.639 Sum_probs=27.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
|+|.||+||||||+++.++..++...+..+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999999999999998876665543
No 314
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.10 E-value=0.024 Score=63.22 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=28.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEec
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~ 93 (954)
.+.-|.|.|++|+|||++|+.++..+++.++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 456789999999999999999999999876544
No 315
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.08 E-value=0.021 Score=58.49 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecccc
Q 002197 47 LLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY 96 (954)
Q Consensus 47 ~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg-----~~VIs~Dd~ 96 (954)
.+++.+....... ....|.|.|++|+||||+++.+++.++ +..++++++
T Consensus 38 ~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 38 ELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp HHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred HHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4455555544432 456788999999999999999998774 234555544
No 316
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.08 E-value=0.025 Score=55.44 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
+.-|.|.|++|+||||+|+.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4456899999999999999999887
No 317
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.05 E-value=0.012 Score=58.22 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
..--+++|.||+|||||||.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445689999999999999999999876
No 318
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.04 E-value=0.022 Score=62.27 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=24.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh---CCeEE
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI---GCTLI 91 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L---g~~VI 91 (954)
..-+.|.|++|+||||+++.++..+ +..++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~ 69 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 4568899999999999999999887 55443
No 319
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.03 E-value=0.015 Score=63.90 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=30.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y 97 (954)
.++.+|+|+|++||||||++..|+..+ | +.+++.|-+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 356899999999999999999999876 3 5567777653
No 320
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.03 E-value=0.01 Score=60.41 Aligned_cols=32 Identities=38% Similarity=0.790 Sum_probs=26.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCceeccccccc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFK 553 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L---g~~vIs~Ddfy~ 553 (954)
+|+|.|++||||||+.+.|+..+ | +..|.|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G---i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG---VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT---CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC---EEEcCEec
Confidence 58999999999999999999876 4 45565544
No 321
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.03 E-value=0.022 Score=63.52 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=33.0
Q ss_pred HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccc
Q 002197 507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLE 549 (954)
Q Consensus 507 i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~D 549 (954)
++.+....+++.+|+|+|++|+||||++..|+..+ | +.+++.|
T Consensus 69 ~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 34444456678999999999999999999998776 3 4556655
No 322
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.03 E-value=0.012 Score=60.44 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
..+|+|+||+|||||||++.|.+.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988764
No 323
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.01 E-value=0.026 Score=57.26 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=26.1
Q ss_pred HHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 509 ALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 509 ~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
........+..+.|.||+|+||||+++.+++.++
T Consensus 37 ~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 37 NGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3333344445788999999999999999998775
No 324
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.00 E-value=0.011 Score=61.38 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=22.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
..+++|.||+||||||+.+.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998866
No 325
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.99 E-value=0.022 Score=55.81 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+.-|.|.||+|+||||+|+.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4456789999999999999999876
No 326
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.96 E-value=0.015 Score=66.94 Aligned_cols=38 Identities=34% Similarity=0.475 Sum_probs=31.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddfy~ 553 (954)
+|.+|.++|++||||||++..|+..+ | +.+++.|-|..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 58999999999999999999999876 2 55788887654
No 327
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.96 E-value=0.03 Score=59.82 Aligned_cols=30 Identities=37% Similarity=0.503 Sum_probs=26.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
|+|.|++||||||+++.++..++...+..+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 899999999999999999998876665544
No 328
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.93 E-value=0.0089 Score=60.60 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
+|.|+|++||||||+|..|+.. |.+++
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~ 27 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVL 27 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeE
Confidence 3789999999999999999876 65543
No 329
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.93 E-value=0.0079 Score=63.74 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
-|.|.|++|+|||++|+.++..++.+++..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 3789999999999999999999987655443
No 330
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.92 E-value=0.013 Score=64.15 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
++-+|+|.||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 331
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.91 E-value=0.015 Score=66.84 Aligned_cols=36 Identities=42% Similarity=0.643 Sum_probs=30.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddf 551 (954)
+|.+|+++|++||||||++..|+..+ | +.+++.|-|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 47899999999999999999999876 3 456777754
No 332
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.90 E-value=0.016 Score=60.88 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=26.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceec
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs 547 (954)
.+.-|.|.||+|+||||+|+.+++.++..++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34557789999999999999999999866543
No 333
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.90 E-value=0.014 Score=58.69 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
..+|+|+|++|||||||++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4688999999999999999998765
No 334
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.85 E-value=0.0078 Score=60.41 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
+.+|+|+|++||||||+++.|...+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 335
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.82 E-value=0.0082 Score=60.89 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.3
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCce
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEV 545 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~v 545 (954)
|.|+|++||||||+|..|+.. +..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 678999999999999999876 5444
No 336
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.81 E-value=0.02 Score=61.01 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=27.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceec
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs 547 (954)
..+.-|.|.||+|+||||+|+.+++.++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 345567889999999999999999999876544
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.80 E-value=0.0094 Score=59.82 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=21.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.+|+|.|++|||||||++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 338
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.79 E-value=0.018 Score=63.88 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=24.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+++.+|+|.||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999876
No 339
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.77 E-value=0.013 Score=57.26 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.-.++|.||+|||||||++.++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999876
No 340
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.77 E-value=0.029 Score=56.93 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 48 lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
.++.+.........+..+.|.|++|+||||+++.+++.++
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344443333344445889999999999999999998775
No 341
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.77 E-value=0.017 Score=58.20 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
.+.+|+|+|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998765
No 342
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.75 E-value=0.022 Score=63.47 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=29.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
+.-|.+.||+|+|||++|+.+++.++.+++..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 4568899999999999999999999988776654
No 343
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.73 E-value=0.016 Score=61.02 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=24.8
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
|+|.||+||||||+++.++..++...+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 88999999999999999999887555443
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.71 E-value=0.02 Score=60.26 Aligned_cols=30 Identities=37% Similarity=0.503 Sum_probs=26.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 65 VGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
|+|.|++||||||+++.++..++...+..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 899999999999999999998876665544
No 345
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.70 E-value=0.048 Score=57.95 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=28.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
...+.-|.|.||+|+|||++|+.+++.+++.++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34456788999999999999999999998775543
No 346
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.66 E-value=0.015 Score=60.49 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHH
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMA 538 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La 538 (954)
--+++|.||+|||||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4589999999999999999988
No 347
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.66 E-value=0.018 Score=61.86 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=26.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceec
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs 547 (954)
+.-|.|.||+|+||||+|+.++..+++.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 4568889999999999999999999876554
No 348
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.66 E-value=0.013 Score=61.79 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999987544
No 349
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.66 E-value=0.016 Score=61.97 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
..-+|+|.||+||||||+.+.|...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34589999999999999999998754
No 350
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.65 E-value=0.027 Score=62.84 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=28.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
+.-|.|.|++|+|||++|+.++..++..++..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 345888999999999999999999998776553
No 351
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.63 E-value=0.026 Score=61.78 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
++-+|+|.||+||||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 352
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.62 E-value=0.033 Score=60.36 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 46 ~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
..+...+.........+..|.|.|++|+||||+|+.+++.++..++
T Consensus 22 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 22 QKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp HHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3344444433333334456889999999999999999999887654
No 353
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.61 E-value=0.032 Score=61.58 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=25.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCce
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~v 545 (954)
.+-.+++.||+|+||||+++.++..+++.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 345688999999999999999999987643
No 354
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.61 E-value=0.02 Score=56.62 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
.+--+++|.|+.|||||||.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445789999999999999999999876
No 355
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.60 E-value=0.016 Score=59.45 Aligned_cols=26 Identities=46% Similarity=0.586 Sum_probs=22.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.--+++|.||+|||||||++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998743
No 356
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.58 E-value=0.039 Score=55.31 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred EeeeCCCCccHHHHHHHHHHHh
Q 002197 520 VGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~L 541 (954)
|.|.||+|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999876
No 357
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.56 E-value=0.029 Score=60.18 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=27.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEec
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~ 93 (954)
+.-|.|.|++|+|||++|+.+++.++.+++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45677999999999999999999998766543
No 358
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.55 E-value=0.023 Score=65.37 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=32.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y~ 98 (954)
++.+|+++|++||||||++..|+..+ | +.++++|-|..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 57999999999999999999999766 3 56788887654
No 359
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.54 E-value=0.14 Score=63.22 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=31.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
.|.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 46789999999999999999999999998877654
No 360
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.52 E-value=0.02 Score=55.81 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
...++|.|++||||||+++.++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999877
No 361
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.51 E-value=0.034 Score=61.24 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 504 i~~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
+..+........-|. +.+.||+|+||||+++.++..+.
T Consensus 34 ~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 334444444333344 78899999999999999999864
No 362
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.50 E-value=0.011 Score=70.00 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=30.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC------Cceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYF 552 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg------~~vIs~Ddfy 552 (954)
.+..+|+|.|++||||||+++.|+..++ +.++..|++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 3567899999999999999999999884 2346666653
No 363
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.49 E-value=0.024 Score=62.74 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=24.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
+++.+|+|.|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999876
No 364
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.48 E-value=0.046 Score=62.89 Aligned_cols=58 Identities=22% Similarity=0.305 Sum_probs=39.1
Q ss_pred cccchhh--hHHHHHHHHHHHHh-----------cCCCcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEecc
Q 002197 37 VHASFDH--GYYLLVKSIQELRE-----------KKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISME 94 (954)
Q Consensus 37 ~~~s~d~--~~~~lv~~i~~~~~-----------~~~~~~IIgItG~sGSGKSTlA~~La~~L-g~~VIs~D 94 (954)
..++|++ +.....+.+.+... ....+.-|.|.||+|+|||++|+.++..+ +..++..+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 4566777 44455555544331 12234678899999999999999999998 66665443
No 365
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.48 E-value=0.036 Score=60.65 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
..+.-|.|.||+|+||||+|+.+++.++..++..+
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 33445788999999999999999999887655443
No 366
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.43 E-value=0.014 Score=67.66 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=30.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceecccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy 552 (954)
+.+.+|.+.|.+||||||+++.|++.++...++.|.|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45788999999999999999999998875555555543
No 367
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.42 E-value=0.027 Score=63.04 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+|+|+||+||||||+.+.|...+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 89999999999999999998765
No 368
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.41 E-value=0.037 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.-|.|.||+|+||||+|+.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999876
No 369
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.39 E-value=0.035 Score=56.80 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 506 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 506 ~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.+....... .+..|.|.||+|+||||+|+.++..++
T Consensus 42 ~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 42 ALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344443332 345677899999999999999998764
No 370
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.38 E-value=0.017 Score=61.10 Aligned_cols=30 Identities=37% Similarity=0.430 Sum_probs=25.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
-|.|.||+|+||||+|+.++..++..++.+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 377899999999999999999988665543
No 371
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.37 E-value=0.032 Score=60.92 Aligned_cols=35 Identities=37% Similarity=0.421 Sum_probs=25.3
Q ss_pred HHHHHHcCC-CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 507 IQALLENKG-LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 507 i~~l~~~~~-~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+.......+ .+.-+.|.||+|+||||+|+.++..+
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 344444332 23346679999999999999999877
No 372
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.35 E-value=0.036 Score=65.00 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=29.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
+..+.|+|++|+||||+|+.+++.+|+.++..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 4688999999999999999999999988876543
No 373
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.32 E-value=0.015 Score=60.73 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999987544
No 374
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.32 E-value=0.023 Score=65.24 Aligned_cols=37 Identities=38% Similarity=0.475 Sum_probs=31.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEeccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~y 97 (954)
++.+|+++|++||||||++..|+..+ | +.++++|-|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 47999999999999999999999776 3 5567888653
No 375
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.31 E-value=0.027 Score=58.95 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=28.7
Q ss_pred hcCCeEEEEEcChhHHHHHHHhcCccccccccchhhHHhhhcchhhhhcccccCcccEEEcCCC
Q 002197 627 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (954)
Q Consensus 627 ~~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~Iep~~~~ADivI~n~~ 690 (954)
...|+.||+++|.++.+.|. .||.-+. ....|...++..|..+.... ....++|+++-
T Consensus 144 ~~PDl~I~Ldv~~e~~~~Ri-~rdr~E~----~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~~ 201 (223)
T 3ld9_A 144 VYPDITFIIDVDINESLSRS-CKNGYEF----ADMEFYYRVRDGFYDIAKKN-PHRCHVITDKS 201 (223)
T ss_dssp SCCSEEEEEECC---------------------CHHHHHHHHHHHHHHHHHC-TTTEEEEESSC
T ss_pred CCCCeEEEEeCCHHHHHHHh-ccCcccc----chHHHHHHHHHHHHHHHHHC-CCCEEEEcCCC
Confidence 35799999999999999987 4442111 12456677777777765433 23567787754
No 376
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.28 E-value=0.02 Score=60.55 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998654
No 377
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.27 E-value=0.024 Score=60.64 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
.+.-+|+|+||+||||||+.+.|...+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344689999999999999999998765
No 378
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.27 E-value=0.023 Score=60.81 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=24.8
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
|+|.||+||||||+++.|+..++...+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 88999999999999999999887555444
No 379
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.26 E-value=0.023 Score=61.96 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=29.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C--Cceeccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESY 551 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L----g--~~vIs~Ddf 551 (954)
++.+|++.|++||||||++..|+..+ | +.++..|-|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 46799999999999999999998765 3 456777765
No 380
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.25 E-value=0.035 Score=62.29 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
++-+|+|.||+||||||+++.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 56799999999999999999999876
No 381
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.25 E-value=0.024 Score=62.16 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=23.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
++.+|+|.|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 382
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.24 E-value=0.052 Score=62.61 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=29.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC--CeEEeccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMEN 95 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg--~~VIs~Dd 95 (954)
.+.-|.+.||+|+|||++|+.+++.+| ++++..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~ 98 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence 345688999999999999999999998 77766554
No 383
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.24 E-value=0.032 Score=56.24 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecccc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd~ 96 (954)
.-|.|+|+||+||||+|..|.+ -|..+++-|..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v 49 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID-RGHQLVCDDVI 49 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEE
Confidence 4689999999999999999987 58888887774
No 384
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.20 E-value=0.018 Score=62.22 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999997644
No 385
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.19 E-value=0.059 Score=60.63 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=29.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
+.-|.|.|++|+|||++|+.++..++..++..+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 4678999999999999999999999988766543
No 386
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.17 E-value=0.032 Score=61.58 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=29.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY 96 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L---g--~~VIs~Dd~ 96 (954)
++.+|+|+|++||||||++..|+..+ | +.++++|-+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 46899999999999999999999876 2 456777754
No 387
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.16 E-value=0.032 Score=61.60 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=29.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cceeccccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L---g--~~vIs~Ddf 551 (954)
+++.+|+|+|++||||||++..|+..+ | +.++..|-+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 357899999999999999999999876 2 445666643
No 388
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.16 E-value=0.019 Score=61.75 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999997644
No 389
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.16 E-value=0.057 Score=62.80 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=27.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
.=|.|.||+|+||||+|+.++..++++++..+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 34889999999999999999999998776543
No 390
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.15 E-value=0.051 Score=54.46 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 48 lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
.++.+.........+ .+.|.|++|+||||+++.+++.+
T Consensus 25 ~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 25 VIQRLKGYVERKNIP-HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHHHTTCCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 334444443333222 38999999999999999999876
No 391
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.027 Score=64.63 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=30.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
...|.=|.+.||+|+|||++|+++|..+++.++.++
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 345667889999999999999999999998876554
No 392
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.13 E-value=0.039 Score=60.53 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.2
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
.-++.-+|+|.||+|||||||++.|+..+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 344556899999999999999999998774
No 393
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.12 E-value=0.021 Score=60.08 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999997544
No 394
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.10 E-value=0.02 Score=60.38 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997644
No 395
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.10 E-value=0.035 Score=59.56 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=25.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceec
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs 547 (954)
+.-|.+.||+|+|||++|+.+++.++..++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3445679999999999999999999866543
No 396
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.09 E-value=0.051 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=22.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
..|.|.|++|+||||+|+.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999876
No 397
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.09 E-value=0.025 Score=58.67 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHH
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLA 83 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La 83 (954)
--+++|.|++|||||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3689999999999999999997
No 398
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.07 E-value=0.026 Score=57.79 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
--+++|.|++||||||+++.|+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998743
No 399
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.06 E-value=0.032 Score=57.92 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=36.8
Q ss_pred cCCeEEEEEcChhHHHHHHHhcCccccccccc--hhhHHhhhcchhhhhcccccCcccEEEcCC
Q 002197 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~--~~q~~~~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
..|+.||+++|.++.+.|...|... ...+ ...|...++..|..+.... ....++|+.+
T Consensus 131 ~PDlvi~Ld~~~e~~~~Ri~~R~~~---dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~ 190 (213)
T 4edh_A 131 RPDLTLVFDLPVEIGLARAAARGRL---DRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAG 190 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHCCCSSC---CTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCc---CcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 4689999999999999998777421 1122 1356667777777664322 1234566654
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.06 E-value=0.051 Score=59.43 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
++.+|+|.|++||||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 401
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.03 E-value=0.019 Score=59.36 Aligned_cols=22 Identities=55% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHH
Q 002197 519 IVGIGGPSGSGKTSLAHKMANI 540 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~ 540 (954)
++||.||+|||||||.+.|+-.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999864
No 402
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.02 E-value=0.046 Score=59.89 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=27.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
+.-|.+.||+|+|||++|+.+++.++..++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 45688899999999999999999998776544
No 403
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.02 E-value=0.034 Score=64.73 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+.+.+|+|.|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 357899999999999999999999866
No 404
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.00 E-value=0.027 Score=62.76 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=27.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
+.-|.+.||+|+|||++|+.|++.++..++..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 345778999999999999999999987766544
No 405
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.00 E-value=0.025 Score=60.08 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHH
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANI 540 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~ 540 (954)
-++||.||+|||||||.+.|+-.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999764
No 406
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.99 E-value=0.029 Score=57.34 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.-+++|.||+|||||||+..|+..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999998643
No 407
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.97 E-value=0.021 Score=61.07 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999987644
No 408
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.94 E-value=0.059 Score=61.99 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 506 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 506 ~i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
++.......+.+.-+.|.||+|+||||+|+.++..+
T Consensus 119 ~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 119 AALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344444443324456789999999999999999876
No 409
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.93 E-value=0.022 Score=60.38 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999987644
No 410
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.91 E-value=0.022 Score=60.12 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=21.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
--+++|.||+|||||||.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997644
No 411
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.91 E-value=0.034 Score=62.12 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=29.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
+.-|.+.|++|+||||+|+.|++.++.+++..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 4468899999999999999999999987776554
No 412
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.88 E-value=0.033 Score=64.00 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=30.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
...|.=|.+.||+|+|||++|+++|..+++.+++++
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345677889999999999999999999998876544
No 413
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.87 E-value=0.067 Score=58.60 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=27.9
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002197 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (954)
Q Consensus 58 ~~~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VI 91 (954)
.-++--+|+|.|++|||||||++.|+..+...|+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~ 155 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence 4455568999999999999999999988755554
No 414
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.87 E-value=0.023 Score=59.91 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999987644
No 415
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.86 E-value=0.029 Score=57.10 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~L 86 (954)
+|+|.|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999999876
No 416
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.84 E-value=0.023 Score=60.51 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999987644
No 417
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.034 Score=63.89 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=29.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
...|.=|.+.||+|+|||++|+++|..+|+.++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34567788899999999999999999999876654
No 418
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.80 E-value=0.073 Score=54.20 Aligned_cols=27 Identities=48% Similarity=0.598 Sum_probs=24.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
.++.+|+|+|.+||||||++..|...+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998765
No 419
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.78 E-value=0.069 Score=61.37 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=35.8
Q ss_pred ccCCcccchhhhH----HH-HHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 33 QSLPVHASFDHGY----YL-LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 33 ~~~~~~~s~d~~~----~~-lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
.+++...+|++-. +. ....+...........-+.|.|++|+||||+++.++..+
T Consensus 96 ~~l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 96 TPLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCCCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3466667777722 22 223333333333325678999999999999999999877
No 420
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.78 E-value=0.025 Score=59.28 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-+++|.||+|||||||.+.|+-.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999997654
No 421
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.78 E-value=0.037 Score=63.71 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=30.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
+.-|.+.||+|+||||+|+.|++.++++++..|.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 4558899999999999999999999998887765
No 422
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.76 E-value=0.08 Score=58.64 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 45 YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 45 ~~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
...+...+..... ...+..|.|.|++|+||||+++.+++.+
T Consensus 29 ~~~l~~~l~~~~~-~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 29 LRDAAIAIRYFVK-NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp HHHHHHHHHHHHT-TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3334444443322 3445689999999999999999999887
No 423
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.76 E-value=0.025 Score=60.71 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 479999999999999999987654
No 424
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.75 E-value=0.032 Score=60.04 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
+.|||.||+|||||||.+.|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999998765
No 425
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.75 E-value=0.029 Score=60.23 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHH
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANI 540 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~ 540 (954)
-++||.||+|||||||.+.|+-.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999764
No 426
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.75 E-value=0.062 Score=59.88 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=27.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCceec
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs 547 (954)
.+.-|.|.||+|+||||+|+.+++.+++.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 45568889999999999999999999876543
No 427
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.74 E-value=0.025 Score=59.08 Aligned_cols=24 Identities=42% Similarity=0.394 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999996544
No 428
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.74 E-value=0.064 Score=61.84 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=27.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC--Cceeccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLE 549 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg--~~vIs~D 549 (954)
.+.-|.+.||+|+|||++|+.++..++ +.++.++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 345677899999999999999999998 6655544
No 429
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.73 E-value=0.033 Score=60.77 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=29.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh----C--CeEEecccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENY 96 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L----g--~~VIs~Dd~ 96 (954)
++.+|+++|++||||||++..|+..+ | +.++++|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 45799999999999999999998765 3 456788775
No 430
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.73 E-value=0.026 Score=64.89 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=31.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-----CCceecccccc
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L-----g~~vIs~Ddfy 552 (954)
+|.+|+|.|++||||||++..|+..+ .+.++++|-|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 46789999999999999999999876 36788888764
No 431
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.71 E-value=0.036 Score=61.00 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.+. +.|.||+|+||||+++.|+..+
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 345 8899999999999999999854
No 432
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.71 E-value=0.028 Score=58.95 Aligned_cols=58 Identities=7% Similarity=-0.034 Sum_probs=36.5
Q ss_pred cCCeEEEEEcChhHHHHHHHhcCccccccccc--hhhHHhhhcchhhhhcccccCcccEEEcCC
Q 002197 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (954)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~RD~~~rg~~~~--~~q~~~~v~p~~~~~Iep~~~~ADivI~n~ 689 (954)
..|+.||+++|.++.+.|...|.. ....+ ...|...++..|..+.... ....++|+.+
T Consensus 151 ~PDl~I~Ldv~~e~~~~Ri~~R~~---~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~ 210 (227)
T 3v9p_A 151 QPDLTVLFDVPPQIASARRGAVRM---PDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSS 210 (227)
T ss_dssp CCSEEEEEECCSSCGGGTTTCCCC---C---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhccC---ccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCC
Confidence 468999999999999988877641 11122 2456777777887775422 1224556554
No 433
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.70 E-value=0.022 Score=59.20 Aligned_cols=23 Identities=35% Similarity=0.709 Sum_probs=20.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L 541 (954)
++||.||+|||||||.+.|+-.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987644
No 434
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.68 E-value=0.033 Score=58.85 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999997655
No 435
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.68 E-value=0.063 Score=62.66 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=29.6
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
..+.-|.|.|++|+|||++|+.++..++.+++..+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 44567899999999999999999999988776544
No 436
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.67 E-value=0.026 Score=60.24 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997644
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.64 E-value=0.027 Score=60.22 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999987543
No 438
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.62 E-value=0.062 Score=58.19 Aligned_cols=30 Identities=37% Similarity=0.494 Sum_probs=25.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCce
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~~v 545 (954)
.+..|.|.||+|+||||+|+.+++.++..+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 334567899999999999999999888654
No 439
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.62 E-value=0.079 Score=53.25 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=26.9
Q ss_pred cEEEEEE-CCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 002197 62 IVTVGIG-GPSGSGKTSLAEKLASVI---G--CTLISMEN 95 (954)
Q Consensus 62 ~~IIgIt-G~sGSGKSTlA~~La~~L---g--~~VIs~Dd 95 (954)
|.+|+|+ +-.|+||||+|..|+..+ | +.+||+|.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 5678887 557799999999998876 3 66788884
No 440
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.61 E-value=0.027 Score=60.59 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-+++|.||+|||||||.+.|+-.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997654
No 441
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.61 E-value=0.052 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 002197 65 VGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~L 86 (954)
|.|.|++|+|||++|+.++...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998864
No 442
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.60 E-value=0.029 Score=60.53 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-++||.|++|||||||.+.|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999997644
No 443
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.59 E-value=0.05 Score=62.49 Aligned_cols=38 Identities=39% Similarity=0.456 Sum_probs=32.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh-----CCeEEecccccc
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRV 98 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L-----g~~VIs~Dd~y~ 98 (954)
++.+|+|+|++||||||++..|+..+ .+.++++|-+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP 140 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence 45799999999999999999999876 367889888754
No 444
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.58 E-value=0.03 Score=58.93 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999996543
No 445
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.58 E-value=0.044 Score=55.64 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=26.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC--Cceecccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLES 550 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg--~~vIs~Dd 550 (954)
...-+++|.|++|||||||+..|+..-+ +.+++.+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3445899999999999999999987333 34455543
No 446
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.035 Score=63.09 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=29.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
..|.=|.+.||+|+|||++|+++|..+++.+++++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 44566888999999999999999999998876544
No 447
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.57 E-value=0.067 Score=58.87 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 46 ~~lv~~i~~~~~~~~~~~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
..+++.+.....+..-+. +.+.||+|+||||+++.++..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 445666655555443333 89999999999999999999874
No 448
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.57 E-value=0.072 Score=59.70 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
++.+|+|.|++||||||+++.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46799999999999999999999876
No 449
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.55 E-value=0.03 Score=60.05 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-++||.|++|||||||.+.|+..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999997544
No 450
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.52 E-value=0.055 Score=60.56 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=25.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh----CCeEEecc
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISME 94 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L----g~~VIs~D 94 (954)
-+|+|+||+||||||+.+.+...+ +..++...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 389999999999999999998765 34455443
No 451
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.52 E-value=0.029 Score=60.15 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999987544
No 452
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.50 E-value=0.14 Score=59.57 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
+..+|+|.|++||||||+++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 46899999999999999999999866
No 453
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.48 E-value=0.03 Score=59.58 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=20.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-+++|.||+|||||||.+.|+-.+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999987543
No 454
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.46 E-value=0.04 Score=57.33 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=25.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~Lg~ 543 (954)
+..+|.+.|++||||||+++.|++.++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3567889999999999999999999975
No 455
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.44 E-value=0.043 Score=55.28 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=28.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccccccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Ddfy~ 553 (954)
.-|.|+|+||+||||+|..|.+ -|..+++=|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i 51 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID-RGHQLVCDDVIDL 51 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEE
Confidence 3577899999999999999987 4877777665544
No 456
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.44 E-value=0.067 Score=59.32 Aligned_cols=35 Identities=31% Similarity=0.591 Sum_probs=27.5
Q ss_pred HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 507 i~~l~~~~~~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
++.+.-...+..+|||.|++|||||||.+.|...+
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 33333345667899999999999999999998754
No 457
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.43 E-value=0.043 Score=57.16 Aligned_cols=28 Identities=21% Similarity=0.110 Sum_probs=25.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCC
Q 002197 61 GIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (954)
Q Consensus 61 ~~~IIgItG~sGSGKSTlA~~La~~Lg~ 88 (954)
+..+|.+.|++||||||+++.|++.++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3468999999999999999999999986
No 458
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.43 E-value=0.03 Score=60.54 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999987644
No 459
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.42 E-value=0.031 Score=59.52 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+-.+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999997654
No 460
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.41 E-value=0.031 Score=57.76 Aligned_cols=23 Identities=48% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHH
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASV 85 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~ 85 (954)
-+++|.|++|||||||.+.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 461
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.39 E-value=0.097 Score=57.89 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 002197 519 IVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 519 iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.+.|.||+|+||||+++.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999999887
No 462
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.39 E-value=0.093 Score=58.08 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=24.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.+.+..|.|.||+|+||||+|+.+++.+
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3456688899999999999999999876
No 463
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.39 E-value=0.04 Score=58.48 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHH
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASV 85 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~ 85 (954)
-+++|.|++|||||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999653
No 464
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.35 E-value=0.035 Score=58.89 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999996644
No 465
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.35 E-value=0.041 Score=61.54 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=26.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
.-|.+.||+|+||||+|+.|++.++..++..|
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 34667999999999999999999987666544
No 466
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.34 E-value=0.077 Score=57.10 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
....-|.|.|++|+|||++|+.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344578999999999999999999887
No 467
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.34 E-value=0.047 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
.-+++|.|++||||||+++.++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998544
No 468
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.33 E-value=0.035 Score=58.61 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
--+++|.|++|||||||.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999997654
No 469
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.33 E-value=0.035 Score=59.41 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997644
No 470
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.31 E-value=0.064 Score=62.75 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=26.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecc
Q 002197 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (954)
Q Consensus 64 IIgItG~sGSGKSTlA~~La~~Lg~~VIs~D 94 (954)
=|.|.||+||||||+|+.++..++..++..+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3899999999999999999999887766554
No 471
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.29 E-value=0.047 Score=67.60 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=30.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEeccc
Q 002197 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (954)
Q Consensus 60 ~~~~IIgItG~sGSGKSTlA~~La~~Lg~~VIs~Dd 95 (954)
..+.-|+|.|++||||||+|+.|+..++..++..+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~ 271 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 345679999999999999999999998877765543
No 472
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.29 E-value=0.046 Score=61.11 Aligned_cols=28 Identities=46% Similarity=0.526 Sum_probs=24.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCe
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVIGCT 89 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~Lg~~ 89 (954)
...++|.|++|||||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3679999999999999999999987654
No 473
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.29 E-value=0.04 Score=61.61 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=23.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCE 544 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~ 544 (954)
-.++|.|++|||||||++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999877543
No 474
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.27 E-value=0.058 Score=58.06 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=22.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
..|.+.||+|+||||+|+.|+..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 475
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.27 E-value=0.043 Score=61.19 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=26.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCceecc
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~ 548 (954)
.-|.|.||+|+|||++|+.+++.++..++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3467799999999999999999998776544
No 476
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.26 E-value=0.045 Score=63.12 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=30.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 515 ~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
..|.=|.+.||+|+|||++|+++|..+++.+++++
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 45677889999999999999999999998876543
No 477
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.25 E-value=0.037 Score=58.34 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997644
No 478
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.24 E-value=0.043 Score=63.22 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=29.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceecccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~Dd 550 (954)
+.-|.+.||+|+||||+|+.|+..+++..+..|.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3447789999999999999999999988877663
No 479
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.24 E-value=0.091 Score=57.93 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=25.7
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 002197 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE 544 (954)
Q Consensus 513 ~~~~p~iIGIsGpsGSGKTTlA~~La~~Lg~~ 544 (954)
....+..+.|.||+|+||||+|+.+++.+++.
T Consensus 34 ~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 34 LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp HTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 33344567789999999999999999988653
No 480
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.24 E-value=0.078 Score=57.05 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=22.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.+.-|.|.||+|+|||++|+.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34457889999999999999999887
No 481
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.23 E-value=0.041 Score=64.46 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=0.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cceeccccc
Q 002197 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (954)
Q Consensus 514 ~~~p~iIGIsGpsGSGKTTlA~~La~~Lg-----~~vIs~Ddf 551 (954)
..++.+|+|+|++||||||++..|+..+. +.+++.|-|
T Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp SS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
No 482
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.22 E-value=0.049 Score=59.87 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=25.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-CCcee
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVV 546 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L-g~~vI 546 (954)
+.-|.|.||+|+|||++|+.++..+ +..++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 4567889999999999999999988 55544
No 483
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.17 E-value=0.038 Score=58.84 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999996544
No 484
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.16 E-value=0.11 Score=57.37 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHhc-CCCcEEEEEECCCCCcHHHHHHHHHHHh----CCeEEec
Q 002197 44 GYYLLVKSIQELREK-KGGIVTVGIGGPSGSGKTSLAEKLASVI----GCTLISM 93 (954)
Q Consensus 44 ~~~~lv~~i~~~~~~-~~~~~IIgItG~sGSGKSTlA~~La~~L----g~~VIs~ 93 (954)
....+...+...... .+.+..+.|.|++|+||||+++.++..+ ++.++..
T Consensus 25 ~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i 79 (389)
T 1fnn_A 25 QLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI 79 (389)
T ss_dssp HHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE
Confidence 334444444443322 2223389999999999999999999888 4445443
No 485
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.14 E-value=0.03 Score=62.77 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~Lg 542 (954)
-+|+|+||+||||||+.+.|...+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3688999999999999999987653
No 486
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.13 E-value=0.039 Score=57.71 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999997654
No 487
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.13 E-value=0.049 Score=63.85 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=28.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCceeccc
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~Lg~~vIs~D 549 (954)
+..+.|.||+|+||||+|+.+++.+|+.++.++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 457888999999999999999999987766543
No 488
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.12 E-value=0.046 Score=60.20 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHc---CCCCEEEeeeCCCCccHHHHHHHHHHHh------CCceeccc
Q 002197 504 VQAIQALLEN---KGLPVIVGIGGPSGSGKTSLAHKMANIV------GCEVVSLE 549 (954)
Q Consensus 504 i~~i~~l~~~---~~~p~iIGIsGpsGSGKTTlA~~La~~L------g~~vIs~D 549 (954)
+..+...... .+.+..|.|.||+|+||||+++.++..+ +..++..+
T Consensus 29 ~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 29 IRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp HHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
No 489
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.12 E-value=0.045 Score=58.67 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHH
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASV 85 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~ 85 (954)
-+++|.|++|||||||.+.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
No 490
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.10 E-value=0.048 Score=56.34 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 517 p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
.-+++|.|++||||||||..++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999998887543
No 491
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.09 E-value=0.047 Score=61.46 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
..-+|+|+||+||||||+.+.|...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44589999999999999999998765
No 492
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.09 E-value=0.04 Score=59.08 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 62 ~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
--+++|.|++|||||||.+.|+..+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3589999999999999999997654
No 493
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.08 E-value=0.073 Score=59.27 Aligned_cols=42 Identities=26% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHHHcCCC--CEEEeeeCCCCccHHHHHHHHHHHh-----CCceeccc
Q 002197 508 QALLENKGL--PVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLE 549 (954)
Q Consensus 508 ~~l~~~~~~--p~iIGIsGpsGSGKTTlA~~La~~L-----g~~vIs~D 549 (954)
+....+..+ ..+|+|.|++|||||||.+.|...+ .+.|+..|
T Consensus 63 ~~~~~~r~~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 63 EQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp HHHHTTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cchhhcccccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
No 494
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.06 E-value=0.12 Score=55.45 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=22.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
..+.+.|++|+||||+|+.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 495
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.06 E-value=0.044 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 002197 516 LPVIVGIGGPSGSGKTSLAHKMANI 540 (954)
Q Consensus 516 ~p~iIGIsGpsGSGKTTlA~~La~~ 540 (954)
..-+++|.||+|||||||+..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999874
No 496
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.05 E-value=0.049 Score=59.85 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHH-hcCCCcEEEEEECCCCCcHHHHHHHHHHHh
Q 002197 47 LLVKSIQELR-EKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 47 ~lv~~i~~~~-~~~~~~~IIgItG~sGSGKSTlA~~La~~L 86 (954)
..++.+.... .....+. +.|.|++|+||||+++.|+..+
T Consensus 21 ~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 21 ELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3444444443 3333344 8999999999999999999854
No 497
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.05 E-value=0.057 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHh
Q 002197 520 VGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 520 IGIsGpsGSGKTTlA~~La~~L 541 (954)
|.|.|++|+|||++|+.+++..
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5579999999999999998864
No 498
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.05 E-value=0.035 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~L 86 (954)
-+++|.|++|||||||.+.|+..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997644
No 499
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.03 E-value=0.057 Score=59.75 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhC
Q 002197 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (954)
Q Consensus 63 ~IIgItG~sGSGKSTlA~~La~~Lg 87 (954)
.+|+|+|++||||||+.+.|+..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3799999999999999999977653
No 500
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.02 E-value=0.032 Score=61.19 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002197 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (954)
Q Consensus 518 ~iIGIsGpsGSGKTTlA~~La~~L 541 (954)
-++||.||+|||||||.+.|+..+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 479999999999999999987654
Done!