Query 002198
Match_columns 954
No_of_seqs 306 out of 2152
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 18:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.5E-37 7.5E-42 345.7 33.6 275 19-294 2-350 (352)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 3.9E-34 8.4E-39 336.3 36.3 242 13-296 51-310 (578)
3 KOG0117 Heterogeneous nuclear 100.0 9.4E-34 2E-38 311.3 34.4 247 12-300 75-338 (506)
4 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.5E-34 2.1E-38 332.0 34.6 277 19-295 1-353 (481)
5 TIGR01628 PABP-1234 polyadenyl 100.0 3.6E-33 7.9E-38 332.9 28.7 235 22-293 2-261 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 3.8E-33 8.3E-38 332.7 27.9 253 18-294 86-365 (562)
7 TIGR01622 SF-CC1 splicing fact 100.0 1.6E-32 3.4E-37 319.1 31.4 276 17-293 86-448 (457)
8 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.4E-32 7.3E-37 320.2 30.7 265 15-293 170-502 (509)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.7E-31 5.8E-36 311.4 34.1 268 20-293 96-480 (481)
10 KOG0145 RNA-binding protein EL 100.0 7.4E-31 1.6E-35 271.5 24.2 275 17-293 38-358 (360)
11 TIGR01645 half-pint poly-U bin 100.0 1.1E-29 2.5E-34 299.1 30.4 155 18-172 105-285 (612)
12 KOG0148 Apoptosis-promoting RN 100.0 1.5E-28 3.2E-33 256.5 19.3 225 17-296 3-241 (321)
13 KOG0127 Nucleolar protein fibr 100.0 8.2E-27 1.8E-31 261.2 26.0 273 21-294 6-379 (678)
14 KOG0144 RNA-binding protein CU 99.9 8.9E-27 1.9E-31 255.4 20.7 161 13-173 27-208 (510)
15 KOG0123 Polyadenylate-binding 99.9 1E-25 2.2E-30 254.5 20.8 234 21-295 2-248 (369)
16 TIGR01659 sex-lethal sex-letha 99.9 3.1E-25 6.7E-30 249.2 23.5 160 15-174 102-278 (346)
17 TIGR01659 sex-lethal sex-letha 99.9 8.2E-24 1.8E-28 237.8 25.9 161 94-296 104-278 (346)
18 KOG0123 Polyadenylate-binding 99.9 9.4E-24 2E-28 238.7 17.9 247 23-294 79-350 (369)
19 KOG0124 Polypyrimidine tract-b 99.9 6.4E-24 1.4E-28 228.1 13.6 152 20-171 113-290 (544)
20 KOG0148 Apoptosis-promoting RN 99.9 4.3E-23 9.3E-28 215.8 16.0 155 18-172 60-239 (321)
21 KOG0110 RNA-binding protein (R 99.9 7.1E-23 1.5E-27 236.6 18.5 247 16-295 381-695 (725)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.8E-22 6E-27 225.2 21.2 156 17-172 86-350 (352)
23 TIGR01645 half-pint poly-U bin 99.9 9.6E-22 2.1E-26 232.3 20.6 169 95-294 105-285 (612)
24 KOG0147 Transcriptional coacti 99.9 2.9E-22 6.2E-27 226.7 14.5 277 16-293 175-528 (549)
25 TIGR01648 hnRNP-R-Q heterogene 99.9 1.4E-21 3E-26 230.6 20.5 212 18-245 136-367 (578)
26 TIGR01622 SF-CC1 splicing fact 99.9 6E-21 1.3E-25 222.2 21.0 169 93-292 85-265 (457)
27 KOG0144 RNA-binding protein CU 99.8 5.6E-21 1.2E-25 210.2 11.4 164 92-296 29-209 (510)
28 KOG1190 Polypyrimidine tract-b 99.8 2.4E-19 5.3E-24 196.2 23.8 286 11-296 19-376 (492)
29 KOG0117 Heterogeneous nuclear 99.8 3E-20 6.4E-25 205.5 15.2 156 18-175 162-335 (506)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.8 3.4E-19 7.4E-24 210.1 22.2 186 94-293 172-375 (509)
31 KOG0109 RNA-binding protein LA 99.8 9.9E-20 2.1E-24 192.3 10.7 151 98-296 3-153 (346)
32 KOG0109 RNA-binding protein LA 99.8 1.2E-19 2.6E-24 191.7 10.8 149 21-173 3-152 (346)
33 KOG4212 RNA-binding protein hn 99.8 2E-17 4.2E-22 182.0 25.9 147 19-165 43-288 (608)
34 KOG0131 Splicing factor 3b, su 99.8 6.9E-19 1.5E-23 175.8 12.7 163 94-297 6-181 (203)
35 KOG0110 RNA-binding protein (R 99.8 3.9E-18 8.5E-23 197.7 15.5 258 15-291 222-596 (725)
36 KOG1190 Polypyrimidine tract-b 99.8 6.7E-17 1.5E-21 177.3 23.6 269 17-293 147-491 (492)
37 KOG1456 Heterogeneous nuclear 99.8 2.5E-16 5.5E-21 170.9 27.0 283 13-296 24-366 (494)
38 KOG0127 Nucleolar protein fibr 99.8 9.4E-18 2E-22 189.0 16.2 184 97-296 5-199 (678)
39 KOG0145 RNA-binding protein EL 99.7 9.3E-18 2E-22 174.7 13.8 159 95-295 39-211 (360)
40 KOG0131 Splicing factor 3b, su 99.7 7.4E-18 1.6E-22 168.4 12.5 157 17-173 6-179 (203)
41 KOG4211 Splicing factor hnRNP- 99.7 4.3E-16 9.4E-21 175.0 27.8 270 16-290 6-355 (510)
42 KOG0105 Alternative splicing f 99.7 1.4E-15 3.1E-20 152.1 18.3 177 95-288 4-185 (241)
43 KOG0120 Splicing factor U2AF, 99.7 3.7E-16 8E-21 179.7 14.8 259 17-293 172-492 (500)
44 KOG0124 Polypyrimidine tract-b 99.6 4.6E-16 9.9E-21 168.1 7.8 163 97-290 113-287 (544)
45 KOG0105 Alternative splicing f 99.6 3.3E-15 7.1E-20 149.5 12.5 149 17-166 3-185 (241)
46 KOG4206 Spliceosomal protein s 99.6 5.4E-14 1.2E-18 145.8 17.8 194 96-291 8-220 (221)
47 KOG4205 RNA-binding protein mu 99.6 3.8E-15 8.2E-20 164.2 9.7 154 18-173 4-178 (311)
48 KOG1456 Heterogeneous nuclear 99.6 9.7E-13 2.1E-17 143.3 26.9 271 17-294 117-492 (494)
49 KOG0146 RNA-binding protein ET 99.6 2.1E-14 4.6E-19 150.4 13.3 211 83-295 2-367 (371)
50 KOG4206 Spliceosomal protein s 99.5 1.6E-13 3.6E-18 142.3 15.5 153 17-169 6-220 (221)
51 KOG0146 RNA-binding protein ET 99.5 7.6E-14 1.7E-18 146.3 11.9 159 14-172 13-366 (371)
52 KOG0106 Alternative splicing f 99.5 7.2E-14 1.6E-18 146.1 8.4 164 98-287 2-165 (216)
53 KOG0147 Transcriptional coacti 99.4 6.6E-14 1.4E-18 159.5 6.3 175 94-297 176-362 (549)
54 KOG4205 RNA-binding protein mu 99.4 1.2E-12 2.7E-17 144.5 15.2 163 96-296 5-179 (311)
55 KOG1457 RNA binding protein (c 99.4 2.2E-12 4.7E-17 132.8 15.1 185 95-281 32-274 (284)
56 KOG1457 RNA binding protein (c 99.4 2.3E-12 4.9E-17 132.7 13.0 142 17-158 31-273 (284)
57 KOG1548 Transcription elongati 99.4 6.7E-12 1.4E-16 136.4 14.6 191 96-292 133-351 (382)
58 PLN03134 glycine-rich RNA-bind 99.4 2.4E-12 5.1E-17 128.4 10.0 80 17-96 31-116 (144)
59 KOG0106 Alternative splicing f 99.4 9.2E-13 2E-17 137.8 6.9 142 21-166 2-166 (216)
60 PLN03134 glycine-rich RNA-bind 99.3 3.9E-11 8.5E-16 119.7 15.4 76 219-295 35-116 (144)
61 KOG4212 RNA-binding protein hn 99.3 1.2E-10 2.5E-15 129.3 16.7 199 92-291 39-292 (608)
62 KOG4211 Splicing factor hnRNP- 99.2 2.8E-10 6.1E-15 128.8 18.8 166 95-294 8-183 (510)
63 PF00076 RRM_1: RNA recognitio 99.2 4.1E-11 8.9E-16 102.6 7.8 65 100-164 1-70 (70)
64 KOG1548 Transcription elongati 99.2 2.2E-10 4.8E-15 124.8 15.0 155 17-171 131-352 (382)
65 KOG0107 Alternative splicing f 99.2 3E-11 6.5E-16 120.9 7.4 77 96-172 9-86 (195)
66 PF00076 RRM_1: RNA recognitio 99.2 3.7E-11 8E-16 102.8 7.0 65 23-87 1-70 (70)
67 KOG1365 RNA-binding protein Fu 99.2 1E-10 2.3E-15 128.1 11.3 266 17-295 57-364 (508)
68 PF07744 SPOC: SPOC domain; I 99.1 4.1E-11 8.9E-16 114.9 5.7 97 509-605 1-119 (119)
69 COG0724 RNA-binding proteins ( 99.1 3.9E-10 8.4E-15 118.5 12.5 114 20-133 115-261 (306)
70 KOG0107 Alternative splicing f 99.1 2.1E-10 4.5E-15 114.9 7.6 75 18-92 8-83 (195)
71 PF13893 RRM_5: RNA recognitio 99.1 5.4E-10 1.2E-14 93.1 8.9 55 236-290 1-56 (56)
72 PLN03120 nucleic acid binding 99.1 4.8E-10 1E-14 120.5 9.9 72 20-92 4-78 (260)
73 KOG0122 Translation initiation 99.0 5.5E-10 1.2E-14 117.0 9.3 80 15-94 184-269 (270)
74 PF14259 RRM_6: RNA recognitio 99.0 6.6E-10 1.4E-14 96.1 8.3 65 100-164 1-70 (70)
75 PLN03120 nucleic acid binding 99.0 6.2E-10 1.3E-14 119.6 9.5 75 97-172 4-81 (260)
76 PF14259 RRM_6: RNA recognitio 99.0 4.2E-10 9.1E-15 97.3 6.7 65 23-87 1-70 (70)
77 KOG0125 Ataxin 2-binding prote 99.0 5.2E-10 1.1E-14 121.1 8.1 94 79-172 75-175 (376)
78 KOG1365 RNA-binding protein Fu 99.0 3.9E-10 8.4E-15 123.7 7.1 152 19-171 160-362 (508)
79 COG0724 RNA-binding proteins ( 99.0 3.1E-09 6.7E-14 111.6 13.6 138 97-253 115-259 (306)
80 KOG0121 Nuclear cap-binding pr 99.0 5.7E-10 1.2E-14 106.6 7.0 78 95-172 34-117 (153)
81 KOG0114 Predicted RNA-binding 99.0 1.7E-09 3.6E-14 100.0 8.7 83 13-95 11-96 (124)
82 PLN03213 repressor of silencin 99.0 1.2E-09 2.6E-14 122.7 8.7 114 14-129 4-135 (759)
83 smart00362 RRM_2 RNA recogniti 99.0 2.4E-09 5.2E-14 90.2 8.4 68 22-89 1-72 (72)
84 smart00362 RRM_2 RNA recogniti 98.9 2.8E-09 6.1E-14 89.8 8.3 67 99-165 1-71 (72)
85 KOG0121 Nuclear cap-binding pr 98.9 1.5E-09 3.2E-14 103.8 6.8 76 17-92 33-114 (153)
86 KOG0120 Splicing factor U2AF, 98.9 2E-09 4.4E-14 124.7 9.2 152 17-171 286-492 (500)
87 PLN03213 repressor of silencin 98.9 2.3E-09 5.1E-14 120.5 8.6 77 95-171 8-88 (759)
88 KOG0114 Predicted RNA-binding 98.9 3.7E-09 8E-14 97.8 8.0 79 94-172 15-96 (124)
89 KOG0125 Ataxin 2-binding prote 98.9 3.7E-09 8E-14 114.7 8.9 82 18-99 94-179 (376)
90 KOG0111 Cyclophilin-type pepti 98.9 1.1E-09 2.4E-14 112.8 4.4 79 17-95 7-91 (298)
91 KOG0122 Translation initiation 98.9 4.1E-09 9E-14 110.5 8.6 79 93-171 185-269 (270)
92 PLN03121 nucleic acid binding 98.9 5.4E-09 1.2E-13 110.9 9.6 74 18-92 3-79 (243)
93 KOG4660 Protein Mei2, essentia 98.9 1.7E-08 3.8E-13 116.1 14.2 156 13-170 68-249 (549)
94 cd00590 RRM RRM (RNA recogniti 98.9 1.1E-08 2.4E-13 86.7 8.7 69 22-90 1-74 (74)
95 PF13893 RRM_5: RNA recognitio 98.8 9.3E-09 2E-13 85.6 7.8 55 114-168 1-56 (56)
96 smart00360 RRM RNA recognition 98.8 1.1E-08 2.4E-13 85.7 7.6 65 25-89 1-71 (71)
97 KOG0149 Predicted RNA-binding 98.8 5.7E-09 1.2E-13 109.2 6.6 73 18-91 10-88 (247)
98 PLN03121 nucleic acid binding 98.8 1.3E-08 2.8E-13 108.1 9.2 75 96-171 4-81 (243)
99 KOG4207 Predicted splicing fac 98.8 5.9E-09 1.3E-13 106.8 6.2 76 17-92 10-91 (256)
100 cd00590 RRM RRM (RNA recogniti 98.8 2.2E-08 4.7E-13 84.8 8.7 69 99-167 1-74 (74)
101 KOG0126 Predicted RNA-binding 98.8 1.3E-09 2.9E-14 109.6 0.6 86 87-172 25-116 (219)
102 KOG0129 Predicted RNA-binding 98.8 8.9E-08 1.9E-12 109.6 15.1 140 13-152 252-432 (520)
103 KOG0132 RNA polymerase II C-te 98.8 1.9E-07 4.1E-12 110.6 17.6 78 97-174 421-498 (894)
104 KOG4207 Predicted splicing fac 98.7 8.8E-09 1.9E-13 105.6 5.2 76 96-171 12-93 (256)
105 KOG0113 U1 small nuclear ribon 98.7 3.3E-08 7.2E-13 106.3 9.3 75 17-91 98-178 (335)
106 smart00360 RRM RNA recognition 98.7 3E-08 6.4E-13 83.1 7.1 65 102-166 1-71 (71)
107 KOG0126 Predicted RNA-binding 98.7 1.5E-09 3.2E-14 109.3 -1.3 74 17-90 32-111 (219)
108 KOG4307 RNA binding protein RB 98.7 1.2E-06 2.6E-11 102.5 22.1 152 18-171 309-514 (944)
109 KOG0112 Large RNA-binding prot 98.7 9.4E-09 2E-13 123.1 4.8 160 13-172 365-532 (975)
110 KOG0149 Predicted RNA-binding 98.7 1.7E-08 3.6E-13 105.8 6.0 76 96-172 11-92 (247)
111 KOG0111 Cyclophilin-type pepti 98.7 1E-08 2.2E-13 105.8 4.3 80 94-173 7-92 (298)
112 KOG0108 mRNA cleavage and poly 98.7 1.8E-08 3.9E-13 116.3 6.7 76 98-173 19-100 (435)
113 KOG0113 U1 small nuclear ribon 98.7 3.9E-08 8.5E-13 105.7 8.1 77 95-171 99-181 (335)
114 KOG0132 RNA polymerase II C-te 98.7 3.5E-08 7.5E-13 116.7 8.3 73 20-92 421-493 (894)
115 KOG0130 RNA-binding protein RB 98.6 4.1E-08 8.9E-13 94.8 6.3 73 19-91 71-149 (170)
116 KOG0108 mRNA cleavage and poly 98.6 7.9E-08 1.7E-12 111.0 9.3 72 21-92 19-96 (435)
117 smart00361 RRM_1 RNA recogniti 98.6 1.1E-07 2.3E-12 83.3 7.6 56 233-288 2-70 (70)
118 KOG0130 RNA-binding protein RB 98.6 7.7E-08 1.7E-12 92.9 5.4 77 97-173 72-154 (170)
119 KOG4307 RNA binding protein RB 98.5 6.4E-07 1.4E-11 104.8 13.5 191 99-295 313-516 (944)
120 KOG0128 RNA-binding protein SA 98.5 1.6E-08 3.5E-13 120.7 -1.6 216 19-294 570-816 (881)
121 KOG0153 Predicted RNA-binding 98.4 3.8E-07 8.2E-12 100.1 7.4 80 14-93 222-302 (377)
122 smart00361 RRM_1 RNA recogniti 98.4 8.1E-07 1.8E-11 77.7 6.6 55 34-88 2-69 (70)
123 KOG0128 RNA-binding protein SA 98.3 4.4E-08 9.4E-13 117.2 -2.5 139 18-170 665-814 (881)
124 KOG0153 Predicted RNA-binding 98.3 1E-06 2.3E-11 96.7 7.4 78 93-170 224-302 (377)
125 KOG4454 RNA binding protein (R 98.3 2.7E-07 5.8E-12 95.7 1.7 129 17-156 6-148 (267)
126 KOG4660 Protein Mei2, essentia 98.2 8.1E-07 1.8E-11 102.7 5.0 176 95-292 73-249 (549)
127 KOG0129 Predicted RNA-binding 98.2 1.7E-05 3.8E-10 91.3 13.7 157 96-274 258-432 (520)
128 KOG4210 Nuclear localization s 98.2 2.4E-06 5.1E-11 94.6 6.5 167 96-294 87-265 (285)
129 KOG0112 Large RNA-binding prot 98.2 1.2E-06 2.6E-11 105.5 4.3 156 97-296 372-534 (975)
130 KOG4661 Hsp27-ERE-TATA-binding 98.2 2.7E-06 5.8E-11 97.6 6.5 75 18-92 403-483 (940)
131 KOG0415 Predicted peptidyl pro 98.1 3.3E-06 7.1E-11 92.7 6.3 80 94-173 236-321 (479)
132 KOG0415 Predicted peptidyl pro 98.1 2.9E-06 6.3E-11 93.1 5.9 79 14-92 233-317 (479)
133 KOG4210 Nuclear localization s 98.1 3.2E-06 7E-11 93.5 5.3 154 18-172 86-265 (285)
134 KOG4661 Hsp27-ERE-TATA-binding 98.1 5.3E-06 1.2E-10 95.2 6.2 75 97-171 405-485 (940)
135 KOG4208 Nucleolar RNA-binding 98.0 1.5E-05 3.2E-10 82.6 8.2 80 15-94 44-130 (214)
136 KOG4454 RNA binding protein (R 98.0 1.6E-06 3.5E-11 90.0 0.3 135 94-279 6-149 (267)
137 KOG4208 Nucleolar RNA-binding 98.0 2.1E-05 4.7E-10 81.5 7.9 75 218-293 49-130 (214)
138 KOG0116 RasGAP SH3 binding pro 97.9 5E-05 1.1E-09 87.7 10.5 71 221-293 291-367 (419)
139 KOG0533 RRM motif-containing p 97.9 4.2E-05 9.2E-10 82.4 8.6 87 16-102 79-170 (243)
140 KOG0151 Predicted splicing reg 97.8 2.6E-05 5.7E-10 92.1 6.9 82 12-93 166-256 (877)
141 KOG0226 RNA-binding proteins [ 97.8 2.3E-05 4.9E-10 83.3 5.1 161 96-292 95-269 (290)
142 KOG0116 RasGAP SH3 binding pro 97.7 0.00011 2.3E-09 85.1 9.9 73 98-171 289-367 (419)
143 KOG2193 IGF-II mRNA-binding pr 97.7 5.7E-06 1.2E-10 92.5 -0.6 152 21-172 2-158 (584)
144 PF04059 RRM_2: RNA recognitio 97.7 0.00013 2.8E-09 68.3 8.3 73 20-92 1-85 (97)
145 KOG2193 IGF-II mRNA-binding pr 97.7 7.2E-06 1.6E-10 91.7 -0.2 154 98-295 2-159 (584)
146 KOG0226 RNA-binding proteins [ 97.7 4E-05 8.6E-10 81.5 5.2 147 23-169 99-268 (290)
147 KOG0533 RRM motif-containing p 97.6 0.00012 2.5E-09 79.0 7.8 80 94-173 80-164 (243)
148 KOG0151 Predicted splicing reg 97.6 7.4E-05 1.6E-09 88.4 6.7 78 94-171 171-257 (877)
149 PF11608 Limkain-b1: Limkain b 97.5 0.0003 6.5E-09 63.6 7.4 68 21-92 3-75 (90)
150 KOG4209 Splicing factor RNPS1, 97.3 0.00021 4.5E-09 77.0 5.0 79 13-92 94-178 (231)
151 KOG4676 Splicing factor, argin 97.3 0.00011 2.4E-09 82.0 2.3 193 97-292 7-225 (479)
152 KOG4209 Splicing factor RNPS1, 97.3 0.00034 7.4E-09 75.4 5.8 78 93-171 97-180 (231)
153 PF11608 Limkain-b1: Limkain b 97.3 0.00082 1.8E-08 60.9 7.0 70 98-171 3-77 (90)
154 PF08777 RRM_3: RNA binding mo 97.0 0.0018 3.8E-08 61.7 7.3 69 21-89 2-75 (105)
155 KOG4676 Splicing factor, argin 97.0 0.00032 6.8E-09 78.5 2.4 136 21-158 8-213 (479)
156 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0026 5.6E-08 53.1 6.3 52 218-272 2-53 (53)
157 PF04059 RRM_2: RNA recognitio 96.9 0.0033 7.2E-08 59.0 7.6 75 98-172 2-88 (97)
158 PF08777 RRM_3: RNA binding mo 96.9 0.0016 3.4E-08 62.0 5.6 72 98-169 2-78 (105)
159 COG5175 MOT2 Transcriptional r 96.9 0.00098 2.1E-08 73.3 4.4 98 20-117 114-240 (480)
160 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.003 6.5E-08 52.7 5.8 53 20-73 1-53 (53)
161 KOG1996 mRNA splicing factor [ 96.7 0.0036 7.8E-08 68.0 6.9 62 233-294 300-368 (378)
162 KOG1855 Predicted RNA-binding 96.7 0.046 1E-06 62.5 15.7 61 216-277 229-308 (484)
163 KOG2202 U2 snRNP splicing fact 96.6 0.0012 2.6E-08 70.9 2.3 58 234-291 83-146 (260)
164 COG5175 MOT2 Transcriptional r 96.5 0.0088 1.9E-07 66.1 8.4 76 96-171 113-203 (480)
165 KOG0115 RNA-binding protein p5 96.3 0.0086 1.9E-07 64.4 6.7 97 67-167 5-110 (275)
166 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.015 3.2E-07 55.0 6.7 72 18-91 4-89 (100)
167 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.02 4.4E-07 54.0 7.6 71 217-291 6-90 (100)
168 KOG1855 Predicted RNA-binding 96.0 0.0078 1.7E-07 68.5 5.0 76 93-168 227-321 (484)
169 KOG1996 mRNA splicing factor [ 95.7 0.019 4E-07 62.7 6.1 62 111-172 300-368 (378)
170 KOG1995 Conserved Zn-finger pr 95.7 0.012 2.6E-07 65.9 4.7 78 15-92 61-152 (351)
171 KOG4849 mRNA cleavage factor I 95.5 1.3 2.8E-05 49.8 19.4 74 218-292 80-162 (498)
172 KOG2416 Acinus (induces apopto 95.3 0.013 2.9E-07 68.9 3.6 80 94-173 441-524 (718)
173 KOG3152 TBP-binding protein, a 95.2 0.013 2.8E-07 63.0 2.8 67 96-162 73-157 (278)
174 KOG2202 U2 snRNP splicing fact 95.1 0.01 2.2E-07 64.0 1.9 59 112-170 83-147 (260)
175 KOG3152 TBP-binding protein, a 95.0 0.016 3.4E-07 62.4 2.9 66 19-84 73-156 (278)
176 KOG2314 Translation initiation 95.0 0.068 1.5E-06 62.9 8.1 73 217-289 57-140 (698)
177 KOG2416 Acinus (induces apopto 94.9 0.023 5E-07 67.0 4.0 77 16-92 440-520 (718)
178 KOG2135 Proteins containing th 94.8 0.016 3.4E-07 66.9 2.5 77 18-95 370-447 (526)
179 KOG1995 Conserved Zn-finger pr 94.8 0.023 5.1E-07 63.7 3.6 80 94-173 63-156 (351)
180 PF08952 DUF1866: Domain of un 94.0 0.15 3.3E-06 51.1 7.1 58 235-295 52-109 (146)
181 PF04847 Calcipressin: Calcipr 93.6 0.14 3.1E-06 53.6 6.3 61 232-292 8-70 (184)
182 PF15023 DUF4523: Protein of u 93.2 0.37 8E-06 48.1 8.0 73 216-290 85-159 (166)
183 KOG2591 c-Mpl binding protein, 93.0 0.18 3.9E-06 59.4 6.5 96 66-165 147-246 (684)
184 PF08952 DUF1866: Domain of un 92.6 0.26 5.7E-06 49.5 6.2 76 15-93 22-106 (146)
185 KOG2314 Translation initiation 92.4 0.33 7.1E-06 57.4 7.5 72 18-89 56-139 (698)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.13 2.9E-06 53.4 3.8 69 16-84 3-83 (176)
187 KOG2591 c-Mpl binding protein, 90.8 0.38 8.2E-06 56.8 5.8 73 17-90 172-248 (684)
188 KOG4285 Mitotic phosphoprotein 90.7 1.1 2.3E-05 49.8 8.7 66 215-284 195-260 (350)
189 KOG2068 MOT2 transcription fac 90.0 0.19 4.1E-06 56.4 2.4 73 20-92 77-161 (327)
190 KOG2135 Proteins containing th 89.8 0.21 4.5E-06 58.0 2.6 62 232-294 386-447 (526)
191 KOG4849 mRNA cleavage factor I 89.2 0.4 8.7E-06 53.7 4.1 71 96-166 79-157 (498)
192 KOG0115 RNA-binding protein p5 89.0 0.95 2E-05 49.2 6.7 87 145-280 6-97 (275)
193 PF15023 DUF4523: Protein of u 88.6 1.7 3.7E-05 43.6 7.6 76 15-92 81-160 (166)
194 KOG4285 Mitotic phosphoprotein 88.6 1.3 2.8E-05 49.2 7.4 70 19-90 196-266 (350)
195 PF04847 Calcipressin: Calcipr 88.6 0.84 1.8E-05 47.9 5.9 61 110-170 8-70 (184)
196 KOG2068 MOT2 transcription fac 87.9 0.18 3.9E-06 56.5 0.5 76 97-172 77-164 (327)
197 PF08675 RNA_bind: RNA binding 87.7 1.6 3.4E-05 40.1 6.2 55 98-155 10-64 (87)
198 PF08675 RNA_bind: RNA binding 87.6 2.3 5E-05 39.0 7.2 57 19-78 8-64 (87)
199 PF10567 Nab6_mRNP_bdg: RNA-re 87.4 8.7 0.00019 42.8 12.9 165 96-277 14-213 (309)
200 PF07576 BRAP2: BRCA1-associat 87.1 5.7 0.00012 38.4 10.1 77 215-292 10-94 (110)
201 PF03880 DbpA: DbpA RNA bindin 86.7 2.5 5.3E-05 37.6 6.9 67 221-290 3-74 (74)
202 PF10309 DUF2414: Protein of u 84.4 4 8.7E-05 35.5 6.8 54 20-76 5-62 (62)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 84.1 2.5 5.3E-05 44.1 6.5 77 95-171 5-98 (176)
204 KOG4574 RNA-binding protein (c 83.3 0.83 1.8E-05 56.5 3.0 74 99-172 300-375 (1007)
205 KOG4574 RNA-binding protein (c 81.4 1.3 2.8E-05 54.9 3.6 67 230-296 309-377 (1007)
206 PRK11634 ATP-dependent RNA hel 80.8 20 0.00044 44.6 13.8 72 219-293 487-563 (629)
207 PF07292 NID: Nmi/IFP 35 domai 79.0 2.7 5.8E-05 39.0 4.1 61 59-119 1-74 (88)
208 PF07576 BRAP2: BRCA1-associat 78.1 13 0.00028 35.9 8.6 67 17-83 10-81 (110)
209 PF10309 DUF2414: Protein of u 77.0 11 0.00024 32.8 7.0 56 216-275 4-62 (62)
210 PF11767 SET_assoc: Histone ly 75.8 7.9 0.00017 34.1 5.9 55 108-165 11-65 (66)
211 PF11767 SET_assoc: Histone ly 75.7 10 0.00022 33.4 6.6 56 229-287 10-65 (66)
212 KOG2318 Uncharacterized conser 75.6 9.5 0.00021 45.9 8.3 49 237-290 255-305 (650)
213 PF10567 Nab6_mRNP_bdg: RNA-re 72.7 59 0.0013 36.6 12.9 153 16-169 11-230 (309)
214 KOG3598 Thyroid hormone recept 70.9 3.3 7.2E-05 54.0 3.3 46 799-844 1994-2045(2220)
215 KOG0804 Cytoplasmic Zn-finger 69.7 11 0.00023 44.3 6.7 71 13-83 67-142 (493)
216 KOG0804 Cytoplasmic Zn-finger 66.0 9 0.0002 44.9 5.2 64 96-159 73-141 (493)
217 KOG2253 U1 snRNP complex, subu 63.2 4.5 9.8E-05 49.2 2.3 72 93-167 36-107 (668)
218 PF03880 DbpA: DbpA RNA bindin 61.4 8.6 0.00019 34.1 3.2 58 31-91 12-74 (74)
219 KOG4019 Calcineurin-mediated s 61.3 9.7 0.00021 39.7 4.0 79 215-293 8-90 (193)
220 KOG0958 DNA damage-responsive 59.5 6 0.00013 48.5 2.4 56 562-630 14-71 (690)
221 PHA01365 hypothetical protein 48.3 6.8 0.00015 35.4 0.4 66 545-612 5-83 (91)
222 KOG2891 Surface glycoprotein [ 44.9 27 0.00058 38.6 4.3 141 30-171 47-268 (445)
223 PF14111 DUF4283: Domain of un 44.6 18 0.00039 35.8 2.8 99 31-132 28-140 (153)
224 KOG2253 U1 snRNP complex, subu 39.3 43 0.00092 41.3 5.2 70 216-290 39-108 (668)
225 KOG4410 5-formyltetrahydrofola 38.2 67 0.0014 35.9 6.0 52 15-66 325-377 (396)
226 KOG4410 5-formyltetrahydrofola 37.1 29 0.00063 38.5 3.1 47 98-144 331-378 (396)
227 KOG0119 Splicing factor 1/bran 37.1 2.9E+02 0.0063 33.4 11.2 15 660-674 305-319 (554)
228 KOG2318 Uncharacterized conser 33.1 1.4E+02 0.0031 36.4 8.1 126 17-168 171-305 (650)
229 smart00545 JmjN Small domain f 32.0 44 0.00096 26.9 2.6 28 573-610 14-41 (42)
230 PF13546 DDE_5: DDE superfamil 29.6 1.2E+02 0.0025 33.4 6.4 118 504-627 103-244 (273)
231 KOG2884 26S proteasome regulat 28.3 1.1E+02 0.0023 33.3 5.4 61 547-616 124-185 (259)
232 cd00594 KU Ku-core domain; inc 27.7 1E+02 0.0022 33.9 5.5 34 562-595 110-145 (272)
233 KOG4019 Calcineurin-mediated s 27.5 42 0.00092 35.2 2.3 73 99-171 12-90 (193)
234 PF07292 NID: Nmi/IFP 35 domai 25.9 81 0.0017 29.4 3.6 73 136-241 1-74 (88)
235 PF02714 DUF221: Domain of unk 22.7 1.2E+02 0.0027 34.0 5.1 57 59-120 1-57 (325)
236 PRK14548 50S ribosomal protein 22.4 1.5E+02 0.0033 27.4 4.6 50 103-152 26-80 (84)
237 TIGR03636 L23_arch archaeal ri 22.0 1.6E+02 0.0035 26.7 4.7 52 101-152 17-73 (77)
238 cd00788 KU70 Ku-core domain, K 21.7 1.4E+02 0.0031 33.3 5.3 33 563-595 117-152 (287)
239 PF10686 DUF2493: Protein of u 21.4 91 0.002 27.8 2.9 27 543-569 40-66 (71)
240 KOG2295 C2H2 Zn-finger protein 20.9 18 0.00039 43.5 -2.0 69 18-86 229-303 (648)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.5e-37 Score=345.67 Aligned_cols=275 Identities=25% Similarity=0.424 Sum_probs=211.1
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
+.++|||+|||.++||++|+++|+.||+|.+|+ .++++|||||+|.+.++|.+||+.|++..|.|+.|+|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999887 35688999999999999999999999999999999999998
Q ss_pred CCC---CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCC--e
Q 002198 93 PAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGG--E 161 (954)
Q Consensus 93 p~k---~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~G--r 161 (954)
+.. ..++|||+|||..+++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|++|++.|||..+.| .
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 654 4678999999999999999999999999999999875 5789999999999999999999998877 6
Q ss_pred EEEEEEccCCcccccCCCCC--------CCCCCC-----------CccCCCCCC-------CCCc---------------
Q 002198 162 QLRVDFLRSQPSRREQWPNS--------HDARDG-----------PIIGRGTGF-------SDNH--------------- 200 (954)
Q Consensus 162 ~I~V~~a~sk~~~~~~~~~~--------~~~r~~-----------~~~g~~~g~-------~~~~--------------- 200 (954)
.|.|.++............. ...... ......... ....
T Consensus 162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR01661 162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA 241 (352)
T ss_pred eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence 78888886554211100000 000000 000000000 0000
Q ss_pred cccccC----------CCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC------CCcEEEEEeCC
Q 002198 201 SAYKRS----------SSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRS 264 (954)
Q Consensus 201 s~~~~~----------~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~------srG~AFVeF~s 264 (954)
...... .............+|+|+|++ .+++|++|+++|++||.|++++|.. +||||||+|.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~-~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLS-PDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEEEeCCC-CCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECC
Confidence 000000 000000001122346666666 4699999999999999999999863 48999999999
Q ss_pred HHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 265 VDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 265 ~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
.++|.+|++.|||..|+|+.|+|.|+.++.
T Consensus 321 ~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 321 YDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999999999997764
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3.9e-34 Score=336.30 Aligned_cols=242 Identities=27% Similarity=0.428 Sum_probs=203.7
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccC-Ccce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFR-GNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~-Gr~I 86 (954)
+.......|+|||+|||.+++|++|+++|++||.|.+|+ .++++|||||+|.+.++|.+||+.|++..|. |+.|
T Consensus 51 ~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 51 SGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 334455679999999999999999999999999999887 3679999999999999999999999999886 7888
Q ss_pred EEEecCCCCCCCeEEEeCCCccCCHHHHHhhhcccc-ceeEEEEe-------ecCCeeEEecCCHHHHHHHHHHhCC--c
Q 002198 87 KIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFL-------KDGNTAFVEYSRLEDAAEALKNING--R 156 (954)
Q Consensus 87 ~V~~A~p~k~srkLfVgNLP~~vTeedL~elFskfG-~Ie~I~Il-------rdrG~AFVeF~t~EdA~~AIe~Lng--~ 156 (954)
.|.++ ..+++|||+|||.++|+++|.++|++++ .++++.+. +.+|+|||+|.++++|.+|++.|+. .
T Consensus 131 ~V~~S---~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 131 GVCIS---VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred ccccc---ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 88775 3578999999999999999999999997 35554443 2368999999999999999988864 3
Q ss_pred eeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHH
Q 002198 157 QIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQML 236 (954)
Q Consensus 157 ~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedL 236 (954)
.+.|+.|.|+|+..+...... .....++|+|++++ .+++|++|
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d~~------------------------------------~~~~~k~LfVgNL~-~~~tee~L 250 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVDED------------------------------------VMAKVKILYVRNLM-TTTTEEII 250 (578)
T ss_pred EecCceEEEEeeccccccccc------------------------------------ccccccEEEEeCCC-CCCCHHHH
Confidence 688999999998764321100 11223566777776 46999999
Q ss_pred HHHHhhc--CCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCC
Q 002198 237 HNAMILF--GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 237 re~Fs~f--G~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
+++|+.| |+|++|++. ++||||+|.+.++|++|++.|||.+|.|+.|+|.|+++....
T Consensus 251 ~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 251 EKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999 999999887 689999999999999999999999999999999999876543
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.4e-34 Score=311.31 Aligned_cols=247 Identities=26% Similarity=0.426 Sum_probs=217.9
Q ss_pred CCCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccC-Cc
Q 002198 12 YDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFR-GN 84 (954)
Q Consensus 12 ~~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~-Gr 84 (954)
++.......|.|||+.||.++.|+||..+|.+.|+|.+++ .+.+||||||.|+++++|.+|++.||+..|+ |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 5666678899999999999999999999999999999998 5789999999999999999999999999986 99
Q ss_pred ceEEEecCCCCCCCeEEEeCCCccCCHHHHHhhhcccc-ceeEEEEee-------cCCeeEEecCCHHHHHHHHHHh-CC
Q 002198 85 PIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLK-------DGNTAFVEYSRLEDAAEALKNI-NG 155 (954)
Q Consensus 85 ~I~V~~A~p~k~srkLfVgNLP~~vTeedL~elFskfG-~Ie~I~Ilr-------drG~AFVeF~t~EdA~~AIe~L-ng 155 (954)
.|.|..+ ..+++|||||||.+.+++||.+.|++.+ -|++|.+.. +||||||+|.++..|..|-++| ++
T Consensus 155 ~igvc~S---van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 155 LLGVCVS---VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred EeEEEEe---eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 9999876 5789999999999999999999999998 578887764 4799999999999999999776 33
Q ss_pred -ceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHH
Q 002198 156 -RQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQ 234 (954)
Q Consensus 156 -~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEe 234 (954)
.+++|..|.|+|+..+...... ....-++|+|.|+. .++||+
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded------------------------------------~ms~VKvLYVRNL~-~~tTeE 274 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDED------------------------------------TMSKVKVLYVRNLM-ESTTEE 274 (506)
T ss_pred ceeecCCcceeeccCcccCCChh------------------------------------hhhheeeeeeeccc-hhhhHH
Confidence 3789999999999887532211 12335778888887 479999
Q ss_pred HHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCCCCCC
Q 002198 235 MLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDY 300 (954)
Q Consensus 235 dLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~g~~~ 300 (954)
.|+++|..||.|++|+.. |.||||.|.+.++|.+|++.+||++|.|..|.|.+||+.......+
T Consensus 275 ~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 275 TLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccch
Confidence 999999999999999988 6699999999999999999999999999999999999887765543
No 4
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=9.5e-34 Score=332.02 Aligned_cols=277 Identities=21% Similarity=0.291 Sum_probs=211.9
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHh--cCCccCCcceEEEecCCCC-
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDAL--QGSDFRGNPIKIEFARPAK- 95 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~L--ng~~L~Gr~I~V~~A~p~k- 95 (954)
++++|||+|||.++||++|+++|++||.|.+|..-++|+||||+|.+.++|.+|++.+ ++..|.|+.|+|.|+....
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 5899999999999999999999999999999997789999999999999999999864 6788999999999985321
Q ss_pred --------------CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCC--eeEEecCCHHHHHHHHHHhCCceeC
Q 002198 96 --------------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN--TAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 96 --------------~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG--~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
...+|||+||++.+|+++|+++|+.||.|.+|.+.++++ +|||+|.+.++|.+|++.|||..|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~ 160 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIY 160 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 113799999999999999999999999999999988865 8999999999999999999999986
Q ss_pred C--eEEEEEEccCCcccc----cCC-----CCCCCCCC-----------CC------ccCCCCCCCCC------------
Q 002198 160 G--EQLRVDFLRSQPSRR----EQW-----PNSHDARD-----------GP------IIGRGTGFSDN------------ 199 (954)
Q Consensus 160 G--r~I~V~~a~sk~~~~----~~~-----~~~~~~r~-----------~~------~~g~~~g~~~~------------ 199 (954)
| +.|+|+|++...-.- ... +.....+. .. ..+...|++..
T Consensus 161 ~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (481)
T TIGR01649 161 NGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDR 240 (481)
T ss_pred CCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccccccc
Confidence 4 689999987543110 000 00000000 00 00000000000
Q ss_pred -cc-----ccccCC--------C--CCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCC-CcEEEEEe
Q 002198 200 -HS-----AYKRSS--------S--VGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-RNYSFVEF 262 (954)
Q Consensus 200 -~s-----~~~~~~--------~--~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~s-rG~AFVeF 262 (954)
.. ...... . ........++.+|+|++++...+++++|+++|+.||.|.+|+++.. +|+|||+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f 320 (481)
T TIGR01649 241 MGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEM 320 (481)
T ss_pred CCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEE
Confidence 00 000000 0 0000113456677787777435899999999999999999999865 69999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCceEEEEEecCCCC
Q 002198 263 RSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 295 (954)
Q Consensus 263 ~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~ 295 (954)
.+.++|.+|++.|||..|.|++|+|.+++.+..
T Consensus 321 ~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~ 353 (481)
T TIGR01649 321 ADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNV 353 (481)
T ss_pred CCHHHHHHHHHHhCCCEECCceEEEEEcccccc
Confidence 999999999999999999999999999876643
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.6e-33 Score=332.88 Aligned_cols=235 Identities=25% Similarity=0.441 Sum_probs=204.0
Q ss_pred EEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCC
Q 002198 22 NLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK 95 (954)
Q Consensus 22 tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k 95 (954)
+|||+|||.++||++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.+++..|.|+.|+|.|+..+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999998873 6788999999999999999999999999999999999986432
Q ss_pred -----CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 96 -----PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 96 -----~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
...+|||+||+.++++++|+++|++||.|.+|++..+ +|+|||+|.+.++|.+|++.+||..+.|+.|.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 3568999999999999999999999999999999875 589999999999999999999999999999999
Q ss_pred EEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCC
Q 002198 166 DFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGE 245 (954)
Q Consensus 166 ~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~ 245 (954)
.....+..+.. ......++++|.+++. +++|++|+++|+.||+
T Consensus 162 ~~~~~~~~~~~-----------------------------------~~~~~~~~l~V~nl~~--~~tee~L~~~F~~fG~ 204 (562)
T TIGR01628 162 GRFIKKHEREA-----------------------------------APLKKFTNLYVKNLDP--SVNEDKLRELFAKFGE 204 (562)
T ss_pred ecccccccccc-----------------------------------ccccCCCeEEEeCCCC--cCCHHHHHHHHHhcCC
Confidence 76544322110 0012234566666655 4999999999999999
Q ss_pred EEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeC----CceEEEEEecCC
Q 002198 246 IERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFN----DPRITIMFSSSE 293 (954)
Q Consensus 246 V~~VkI~~-----srG~AFVeF~s~EdA~kAie~LNG~~f~----Gr~I~Vs~Ak~e 293 (954)
|+++.+.. .+|||||+|.+.++|.+|++.|||+.|. |+.|.|.++..+
T Consensus 205 i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 205 ITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccCh
Confidence 99999863 4789999999999999999999999999 999999887554
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.8e-33 Score=332.67 Aligned_cols=253 Identities=26% Similarity=0.422 Sum_probs=208.7
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
...++|||+|||.++|+++|+++|+.||.|.+|+ .++++|||||+|.+.++|.+|++++++..+.++.|.|....
T Consensus 86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 3467899999999999999999999999999876 35689999999999999999999999999999999997654
Q ss_pred C--------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 93 P--------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 93 p--------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
+ ....++|||+||+.++|+++|+++|+.||.|.++.+.++ +|+|||+|.+.++|.+|++.|++..+.
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~ 245 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG 245 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEec
Confidence 3 223467999999999999999999999999999999876 578999999999999999999999999
Q ss_pred ----CeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHH
Q 002198 160 ----GEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQM 235 (954)
Q Consensus 160 ----Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEed 235 (954)
|+.|.|.++..+..+......... . ............+++|.|++. .+++++
T Consensus 246 ~~~~g~~l~v~~a~~k~er~~~~~~~~~--------------~--------~~~~~~~~~~~~~l~V~nl~~--~~~~~~ 301 (562)
T TIGR01628 246 LAKEGKKLYVGRAQKRAEREAELRRKFE--------------E--------LQQERKMKAQGVNLYVKNLDD--TVTDEK 301 (562)
T ss_pred ccccceeeEeecccChhhhHHHHHhhHH--------------h--------hhhhhhcccCCCEEEEeCCCC--ccCHHH
Confidence 999999987765433211000000 0 000000112234455555544 499999
Q ss_pred HHHHHhhcCCEEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 236 LHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 236 Lre~Fs~fG~V~~VkI~-----~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
|+++|+.||.|++++++ .++|||||+|.+.++|.+|++.|||+.|+|++|.|.|+..+.
T Consensus 302 L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 302 LRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999999999986 347999999999999999999999999999999999997654
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.6e-32 Score=319.05 Aligned_cols=276 Identities=24% Similarity=0.369 Sum_probs=206.4
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
+.+.++|||+|||..+|+++|+++|+.||.|.+|. .++++|||||+|.+.++|.+|| .|++..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 55688999999999999999999999999999888 3567999999999999999999 6999999999999987
Q ss_pred cCCC---------------CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHH
Q 002198 91 ARPA---------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEA 149 (954)
Q Consensus 91 A~p~---------------k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~A 149 (954)
+... ...++|||+||+..+|+++|+++|+.||.|..|.+..+ +|+|||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6421 22579999999999999999999999999999999965 57899999999999999
Q ss_pred HHHhCCceeCCeEEEEEEccCCcccccCCCCCCCCCC----CC-------------c-cCC---CCCCCCCc------cc
Q 002198 150 LKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARD----GP-------------I-IGR---GTGFSDNH------SA 202 (954)
Q Consensus 150 Ie~Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~----~~-------------~-~g~---~~g~~~~~------s~ 202 (954)
++.|+|..|.|+.|+|.|+.................. +. . ... +....... ..
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK 324 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc
Confidence 9999999999999999997743221110000000000 00 0 000 00000000 00
Q ss_pred ccc----------------------CCCCCCCCCCCCceEEEEcCCCCCCCC---------HHHHHHHHhhcCCEEEEEE
Q 002198 203 YKR----------------------SSSVGRNRDGPPSKILWVGYPPSVQMD---------EQMLHNAMILFGEIERIKS 251 (954)
Q Consensus 203 ~~~----------------------~~~~~~~~~~~ps~Vlvvgn~ps~~vt---------EedLre~Fs~fG~V~~VkI 251 (954)
... ...........+++++++.++...... ++||++.|++||.|++|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v 404 (457)
T TIGR01622 325 LQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYV 404 (457)
T ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEE
Confidence 000 000000001234566666555322111 3689999999999999998
Q ss_pred e--CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 252 Y--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 252 ~--~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
. ...|++||+|.+.++|.+|++.|||++|+|+.|.+.|...+
T Consensus 405 ~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 405 DTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred eCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 6 45799999999999999999999999999999999998654
No 8
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.4e-32 Score=320.21 Aligned_cols=265 Identities=21% Similarity=0.355 Sum_probs=206.4
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhcc------------CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKF------------GALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~y------------G~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~ 82 (954)
......++|||+|||+++|+++|+++|..+ +.|..+.+.+++|||||+|.+.++|..|| .|++..|.
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~ 248 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYS 248 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEee
Confidence 346678999999999999999999999974 35667778899999999999999999999 79999999
Q ss_pred CcceEEEecCC--------------------------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEe
Q 002198 83 GNPIKIEFARP--------------------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130 (954)
Q Consensus 83 Gr~I~V~~A~p--------------------------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Il 130 (954)
|+.|+|..... ....++|||+|||+.+|+++|+++|+.||.|..+.++
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 99999964321 1124689999999999999999999999999999998
Q ss_pred ec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccc
Q 002198 131 KD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYK 204 (954)
Q Consensus 131 rd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~ 204 (954)
++ +|+|||+|.+.++|..|++.|+|..|+|+.|.|.++............ .. .... .......
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~--~~-~~~~-------~~~~~~~- 397 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTS--NG-MAPV-------TLLAKAL- 397 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccc--cc-cccc-------ccccccc-
Confidence 75 589999999999999999999999999999999998754322111000 00 0000 0000000
Q ss_pred cCCCCCCCCCCCCceEEEEcCCCCC---------CCCHHHHHHHHhhcCCEEEEEEeCC---------CcEEEEEeCCHH
Q 002198 205 RSSSVGRNRDGPPSKILWVGYPPSV---------QMDEQMLHNAMILFGEIERIKSYPS---------RNYSFVEFRSVD 266 (954)
Q Consensus 205 ~~~~~~~~~~~~ps~Vlvvgn~ps~---------~vtEedLre~Fs~fG~V~~VkI~~s---------rG~AFVeF~s~E 266 (954)
..........+++++++.|.... ....++|+++|++||.|++|+|.+. +|+|||+|.+.+
T Consensus 398 --~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e 475 (509)
T TIGR01642 398 --SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVR 475 (509)
T ss_pred --hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHH
Confidence 00000112346778887776421 0112679999999999999999632 589999999999
Q ss_pred HHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 267 EARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 267 dA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
+|.+|++.|||++|+|+.|.|.|...+
T Consensus 476 ~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 476 SAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred HHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 999999999999999999999998543
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.7e-31 Score=311.41 Aligned_cols=268 Identities=28% Similarity=0.433 Sum_probs=206.3
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCc--ceEEEecCCC-
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSS--RSFAFVYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARPA- 94 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gks--kG~AFVeF~s~edA~~AL~~Lng~~L~Gr--~I~V~~A~p~- 94 (954)
..+|||+||++++|+++|+++|+.||.|.+|.+.+. +++|||+|.+.++|.+|++.|||..|.|+ .|+|.|+++.
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 458999999999999999999999999999984333 46999999999999999999999999754 7888776520
Q ss_pred --------------------------------------------------------------------------------
Q 002198 95 -------------------------------------------------------------------------------- 94 (954)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (954)
T Consensus 176 l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
T TIGR01649 176 LNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY 255 (481)
T ss_pred ceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccc
Confidence
Q ss_pred -----------------CCCCeEEEeCCCc-cCCHHHHHhhhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCC
Q 002198 95 -----------------KPSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNING 155 (954)
Q Consensus 95 -----------------k~srkLfVgNLP~-~vTeedL~elFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng 155 (954)
..+++|||+||++ .+|+++|+++|+.||.|.+|+++++ +|+|||+|.+.++|..|++.|||
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng 335 (481)
T TIGR01649 256 EAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNG 335 (481)
T ss_pred cccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 0235899999997 6999999999999999999999987 58999999999999999999999
Q ss_pred ceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCC-CccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHH
Q 002198 156 RQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSD-NHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQ 234 (954)
Q Consensus 156 ~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~-~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEe 234 (954)
..|.|+.|+|.+++................ ... .++.. ..................+++.|++.|++ .+++|+
T Consensus 336 ~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~-~~~----~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp-~~~tee 409 (481)
T TIGR01649 336 VKLFGKPLRVCPSKQQNVQPPREGQLDDGL-TSY----KDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIP-LSVSEE 409 (481)
T ss_pred CEECCceEEEEEcccccccCCCCCcCcCCC-ccc----ccccCCccccCCCcccccccccCCCCcEEEEecCC-CCCCHH
Confidence 999999999999866532111100000000 000 00000 00000000000111123466677777777 469999
Q ss_pred HHHHHHhhcCC--EEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCCeeCCce------EEEEEecCC
Q 002198 235 MLHNAMILFGE--IERIKSYPS----RNYSFVEFRSVDEARRAKEGLQGRLFNDPR------ITIMFSSSE 293 (954)
Q Consensus 235 dLre~Fs~fG~--V~~VkI~~s----rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~------I~Vs~Ak~e 293 (954)
+|+++|+.||. |+.|++++. +++|||+|.+.++|.+|+..|||..|.|+. |+|+|+++.
T Consensus 410 ~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 410 DLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999998 889998754 489999999999999999999999999985 999999764
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=7.4e-31 Score=271.48 Aligned_cols=275 Identities=27% Similarity=0.457 Sum_probs=214.2
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
+...++|.|.=||.++|+++|+.+|...|+|++|+ .+.+-||+||.|.+++||++|+..+||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45678899999999999999999999999999988 577899999999999999999999999999999999999
Q ss_pred cCCCCC---CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCC-
Q 002198 91 ARPAKP---SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGG- 160 (954)
Q Consensus 91 A~p~k~---srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~G- 160 (954)
++|... ...|||.+||..+|..||+++|+.||.|..-+|+.| ||.|||.|...++|+.||+.|||..-.|
T Consensus 118 ARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred ccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 998664 568999999999999999999999999988888877 6889999999999999999999997765
Q ss_pred -eEEEEEEccCCcccccCCCC------CCCCCCCCcc-----CCCCCCCCCcccccc------------CCCCCCCCCCC
Q 002198 161 -EQLRVDFLRSQPSRREQWPN------SHDARDGPII-----GRGTGFSDNHSAYKR------------SSSVGRNRDGP 216 (954)
Q Consensus 161 -r~I~V~~a~sk~~~~~~~~~------~~~~r~~~~~-----g~~~g~~~~~s~~~~------------~~~~~~~~~~~ 216 (954)
.+|.|+|+..........+- ......+... .+............+ .+.........
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 79999999876443221110 0000000000 000000000000000 00001111222
Q ss_pred CceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 217 PSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 217 ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
.-++++.++.+ +.+|..|+++|..||.|..|++.+ .|||+||.+.+.+||..||..|||..+++|.+.|+|.
T Consensus 278 g~ciFvYNLsp--d~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 278 GWCIFVYNLSP--DADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred eeEEEEEecCC--CchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 33445455555 489999999999999999999974 5899999999999999999999999999999999998
Q ss_pred cCC
Q 002198 291 SSE 293 (954)
Q Consensus 291 k~e 293 (954)
.++
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 765
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.1e-29 Score=299.06 Aligned_cols=155 Identities=25% Similarity=0.473 Sum_probs=142.0
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
...|+|||+|||+++||++|+++|.+||.|.+|. .++++|||||+|.+.++|.+|++.|+|..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4678999999999999999999999999999887 3678999999999999999999999999999999999865
Q ss_pred CC--------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHH
Q 002198 92 RP--------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALK 151 (954)
Q Consensus 92 ~p--------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe 151 (954)
.. ....++|||+||++++++++|+++|+.||.|++|++.++ +|||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 31 123479999999999999999999999999999999876 6899999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCc
Q 002198 152 NINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 152 ~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
.||+..|+|+.|+|.++....
T Consensus 265 amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999988643
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.5e-28 Score=256.49 Aligned_cols=225 Identities=24% Similarity=0.488 Sum_probs=183.1
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC---
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP--- 93 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p--- 93 (954)
+.+-++|||+||..++||+-|..+|++.|.|.++++- |. .|+|.|+..
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i---------~~--------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI---------FD--------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceee---------hh--------------------hhccccccCccc
Confidence 4567899999999999999999999999999877632 22 344444431
Q ss_pred -----CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeE
Q 002198 94 -----AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (954)
Q Consensus 94 -----~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~ 162 (954)
......+||+.|...++.++|++.|.+||+|.++++++| ||||||.|.+.+||+.||..|||+-|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 112456999999999999999999999999999999998 799999999999999999999999999999
Q ss_pred EEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhh
Q 002198 163 LRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMIL 242 (954)
Q Consensus 163 I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~ 242 (954)
|+.+|++.+..+.... ...+++.+ ......++.+++|+... .++|++|++.|+.
T Consensus 134 IRTNWATRKp~e~n~~--------------~ltfdeV~-----------NQssp~NtsVY~G~I~~-~lte~~mr~~Fs~ 187 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGK--------------PLTFDEVY-----------NQSSPDNTSVYVGNIAS-GLTEDLMRQTFSP 187 (321)
T ss_pred eeccccccCccccCCC--------------CccHHHHh-----------ccCCCCCceEEeCCcCc-cccHHHHHHhccc
Confidence 9999999876222110 01111111 11222344455666554 4899999999999
Q ss_pred cCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCC
Q 002198 243 FGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 243 fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
||.|.+|++++.+||+||.|++.|.|.+||..+||.++.|..++|.|-|.....
T Consensus 188 fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 188 FGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred CCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999999999999999999999999999999999999999999999876543
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=8.2e-27 Score=261.20 Aligned_cols=273 Identities=23% Similarity=0.382 Sum_probs=207.1
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~ 94 (954)
.||||++||++++.++|.++|+..|.|..+. ...++||+||.|.-.||+.+|+++..+..|.|+.|+|..++..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 8999999999999999999999999998655 3457999999999999999999999999999999999887521
Q ss_pred -----------------------------CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEec
Q 002198 95 -----------------------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEY 140 (954)
Q Consensus 95 -----------------------------k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF 140 (954)
.+..+|.|+|||+.+.+.+|+.+|+.||.|.+|.|.+. .|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 12458999999999999999999999999999999976 48999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeEEEEEEccCCcccccCC--------------CCCC-CCC--------CCCccCCCC---
Q 002198 141 SRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQW--------------PNSH-DAR--------DGPIIGRGT--- 194 (954)
Q Consensus 141 ~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~~--------------~~~~-~~r--------~~~~~g~~~--- 194 (954)
.+..+|..|++.+|+..|.||+|.|.|+-.+..-.... .+.. ... .+.......
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 99999999999999999999999999998764321100 0000 000 000000000
Q ss_pred ------------------CCCCCc-cccccCCCCCC----CCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEE
Q 002198 195 ------------------GFSDNH-SAYKRSSSVGR----NRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKS 251 (954)
Q Consensus 195 ------------------g~~~~~-s~~~~~~~~~~----~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI 251 (954)
...+.. ++......... ..+.....++||.|++ |+++|++|.++|++||+|..+.|
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~-fD~tEEel~~~fskFG~v~ya~i 324 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLP-FDTTEEELKEHFSKFGEVKYAII 324 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCC-ccccHHHHHHHHHhhccceeEEE
Confidence 000000 00000000000 1111223567777776 78999999999999999998887
Q ss_pred e------CCCcEEEEEeCCHHHHHHHHHHh-----CC-CeeCCceEEEEEecCCC
Q 002198 252 Y------PSRNYSFVEFRSVDEARRAKEGL-----QG-RLFNDPRITIMFSSSEL 294 (954)
Q Consensus 252 ~------~srG~AFVeF~s~EdA~kAie~L-----NG-~~f~Gr~I~Vs~Ak~e~ 294 (954)
. .++|+|||.|.+..+|.+||++. .| ..+.||-|.|..+-.+.
T Consensus 325 V~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 325 VKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred EeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 5 45899999999999999999977 34 67889999999885443
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=8.9e-27 Score=255.41 Aligned_cols=161 Identities=31% Similarity=0.567 Sum_probs=143.7
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCc-cC--C
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSD-FR--G 83 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~-L~--G 83 (954)
.+..+.+.-+|||+-||..++|.||+++|.+||.|.+|. ++.++|||||+|.+.++|.+|+..|++.. |- .
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 445567889999999999999999999999999999887 45689999999999999999999998765 44 4
Q ss_pred cceEEEecCCCCC----CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhC
Q 002198 84 NPIKIEFARPAKP----SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNIN 154 (954)
Q Consensus 84 r~I~V~~A~p~k~----srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Ln 154 (954)
..|.|+++..++. +++||||-|+..+||.||+++|++||.|++|.|++| ||+|||+|.+.|.|..||+.||
T Consensus 107 ~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 107 HPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred cceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhc
Confidence 5899999875443 689999999999999999999999999999999997 7999999999999999999999
Q ss_pred Cc-eeCC--eEEEEEEccCCcc
Q 002198 155 GR-QIGG--EQLRVDFLRSQPS 173 (954)
Q Consensus 155 g~-~i~G--r~I~V~~a~sk~~ 173 (954)
+. ++.| .+|.|+|++.++.
T Consensus 187 g~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred cceeeccCCCceEEEecccCCC
Confidence 97 5665 7999999998765
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1e-25 Score=254.55 Aligned_cols=234 Identities=23% Similarity=0.457 Sum_probs=204.2
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEE----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCCC
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP 96 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k~ 96 (954)
..|||+ +++||..|.++|+++|.|++|+ . .+-|||||.|.++++|++|++++|...+.|+.|+|.|+..+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 468998 9999999999999999999887 4 3899999999999999999999999999999999999975544
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
. |||.||++++|.++|.++|+.||+|.+|++..+ +|+ ||+|+++++|.+|++.+||..+.++.|.|.....+.
T Consensus 78 ~--~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 L--VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred e--eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 4 999999999999999999999999999999988 578 999999999999999999999999999998876654
Q ss_pred ccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEe
Q 002198 173 SRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY 252 (954)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~ 252 (954)
.+.... .. ....-++++++++.. +++++.|.++|..||.|.++.++
T Consensus 155 er~~~~-------------------------------~~-~~~~~t~v~vk~~~~--~~~~~~l~~~f~~~g~i~s~~v~ 200 (369)
T KOG0123|consen 155 EREAPL-------------------------------GE-YKKRFTNVYVKNLEE--DSTDEELKDLFSAYGSITSVAVM 200 (369)
T ss_pred hhcccc-------------------------------cc-hhhhhhhhheecccc--ccchHHHHHhhcccCcceEEEEe
Confidence 332110 00 123345667777663 48999999999999999999987
Q ss_pred C-----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCC
Q 002198 253 P-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 295 (954)
Q Consensus 253 ~-----srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~ 295 (954)
+ +++|+||.|.+.++|.+|++.|+|..+.|..+.|.-+..+..
T Consensus 201 ~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 201 RDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSE 248 (369)
T ss_pred ecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchh
Confidence 4 589999999999999999999999999999999988866443
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=3.1e-25 Score=249.24 Aligned_cols=160 Identities=29% Similarity=0.479 Sum_probs=145.6
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
......++|||+|||.++||++|+++|+.||.|++|+ +++++|||||+|.++++|++|++.|++..|.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 4567899999999999999999999999999998886 3567899999999999999999999999999999999
Q ss_pred EecCCC---CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 89 EFARPA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 89 ~~A~p~---k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
.++++. ....+|||+|||+++|+++|+++|++||.|+.|.|++++ ++|||+|.+.++|++||+.||+..+.
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 998763 346789999999999999999999999999999999874 79999999999999999999999886
Q ss_pred C--eEEEEEEccCCccc
Q 002198 160 G--EQLRVDFLRSQPSR 174 (954)
Q Consensus 160 G--r~I~V~~a~sk~~~ 174 (954)
+ +.|+|.+++.....
T Consensus 262 g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 262 GGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCceeEEEEECCccccc
Confidence 5 79999998876543
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.92 E-value=8.2e-24 Score=237.78 Aligned_cols=161 Identities=21% Similarity=0.343 Sum_probs=136.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++|+++|+++|+.||.|++|+|++| +|+|||+|.++++|++|++.|++..+.++.|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 446789999999999999999999999999999999877 37899999999999999999999999999999998
Q ss_pred ccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEE
Q 002198 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 247 (954)
Q Consensus 168 a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~ 247 (954)
++.... .....+|+|. +++ ..++|++|+++|++||+|+
T Consensus 184 a~p~~~----------------------------------------~~~~~~lfV~-nLp-~~vtee~L~~~F~~fG~V~ 221 (346)
T TIGR01659 184 ARPGGE----------------------------------------SIKDTNLYVT-NLP-RTITDDQLDTIFGKYGQIV 221 (346)
T ss_pred cccccc----------------------------------------ccccceeEEe-CCC-CcccHHHHHHHHHhcCCEE
Confidence 754210 0012345554 444 3599999999999999999
Q ss_pred EEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCC--ceEEEEEecCCCCC
Q 002198 248 RIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELAP 296 (954)
Q Consensus 248 ~VkI~~s------rG~AFVeF~s~EdA~kAie~LNG~~f~G--r~I~Vs~Ak~e~~~ 296 (954)
+++|..+ ++||||+|.+.++|++|++.||+..|.| ++|+|.|++.....
T Consensus 222 ~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 222 QKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 9998743 5899999999999999999999999876 68999999765443
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=9.4e-24 Score=238.68 Aligned_cols=247 Identities=24% Similarity=0.425 Sum_probs=202.3
Q ss_pred EEEccCCcCCcHHHHHHHHhccCCeeEEE----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC----
Q 002198 23 LWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA---- 94 (954)
Q Consensus 23 LfV~NLP~svTE~dL~e~Fs~yG~I~sV~----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~---- 94 (954)
|||+||++++|..+|.++|+.||.|.+|+ ..-++|| ||+|.++++|.+|++.+||..+.++.|.|......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 99999999999999999999999999998 2338999 99999999999999999999999999999766431
Q ss_pred -------CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeE
Q 002198 95 -------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (954)
Q Consensus 95 -------k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~ 162 (954)
..-..++|.+++.+.++++|.++|..+|.|..+.++.+ ++++||.|++.++|..|++.|++..+.+..
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~ 237 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKE 237 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccc
Confidence 22457899999999999999999999999999999986 689999999999999999999999999999
Q ss_pred EEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhh
Q 002198 163 LRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMIL 242 (954)
Q Consensus 163 I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~ 242 (954)
+.|..+..+..+......... .............+++ +.+++ ..++++.|++.|+.
T Consensus 238 ~~V~~aqkk~e~~~~l~~~~~----------------------~~~~~~~~~~~~~nl~-vknld-~~~~~e~L~~~f~~ 293 (369)
T KOG0123|consen 238 LYVGRAQKKSEREAELKRKFE----------------------QEFAKRSVSLQGANLY-VKNLD-ETLSDEKLRKIFSS 293 (369)
T ss_pred eeecccccchhhHHHHhhhhH----------------------hhhhhccccccccccc-cccCc-cccchhHHHHHHhc
Confidence 999887764322211100000 0000001112223444 44444 24899999999999
Q ss_pred cCCEEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 243 FGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 243 fG~V~~VkI~-----~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
||+|.+++++ +++||+||+|.+.++|.+|+..+||+.+.++.|.|.++....
T Consensus 294 ~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 294 FGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred ccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhc
Confidence 9999999886 468999999999999999999999999999999999986433
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.4e-24 Score=228.13 Aligned_cols=152 Identities=25% Similarity=0.472 Sum_probs=139.9
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC-
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR- 92 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~- 92 (954)
.|+|||+.|.+++.|+.|+..|.+||.|.+|. +++.||||||+|+-+|.|.-|++.||+..++||.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 58999999999999999999999999999997 78899999999999999999999999999999999997432
Q ss_pred -------------CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHh
Q 002198 93 -------------PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNI 153 (954)
Q Consensus 93 -------------p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~L 153 (954)
..+.-++|||..+..+++++||+..|+.||+|..|.+.++ |||||++|.+......|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 1334679999999999999999999999999999999876 799999999999999999999
Q ss_pred CCceeCCeEEEEEEccCC
Q 002198 154 NGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 154 ng~~i~Gr~I~V~~a~sk 171 (954)
|-..++|..|+|......
T Consensus 273 NlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred chhhcccceEecccccCC
Confidence 999999999999765544
No 20
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.3e-23 Score=215.80 Aligned_cols=155 Identities=27% Similarity=0.514 Sum_probs=144.8
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
+..-.|||+.|..+++.++|++.|.+||+|.+.+ +.++|||+||.|.+++||+.||..|+|..|++|.|+-.|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 3366899999999999999999999999997655 7889999999999999999999999999999999999999
Q ss_pred CC-------------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHH
Q 002198 92 RP-------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKN 152 (954)
Q Consensus 92 ~p-------------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~ 152 (954)
.. ...+++||||||+..+|+++|++.|+.||.|.+|++.+++||+||.|++.|+|..||..
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQ 219 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHH
Confidence 63 33578999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCeEEEEEEccCCc
Q 002198 153 INGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 153 Lng~~i~Gr~I~V~~a~sk~ 172 (954)
+|+..|+|..+++.|-+...
T Consensus 220 mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 220 MNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred hcCceeCceEEEEeccccCC
Confidence 99999999999999977654
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=7.1e-23 Score=236.65 Aligned_cols=247 Identities=24% Similarity=0.394 Sum_probs=208.4
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC--
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP-- 93 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p-- 93 (954)
..+..+.|+|+|||..+..++|.+.|..||.|..|......--|+|.|.+..+|.+|++.|....+....++++|+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 467789999999999999999999999999999998776666699999999999999999999999999998888731
Q ss_pred -------------------------------------C--------------CCCCeEEEeCCCccCCHHHHHhhhcccc
Q 002198 94 -------------------------------------A--------------KPSKHLWVGGISQTVSKEELEEGFLKFG 122 (954)
Q Consensus 94 -------------------------------------~--------------k~srkLfVgNLP~~vTeedL~elFskfG 122 (954)
. ....+|||.||+++.|.++|..+|.+.|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 0 0112399999999999999999999999
Q ss_pred ceeEEEEeecC---------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCC
Q 002198 123 NIEDFKFLKDG---------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRG 193 (954)
Q Consensus 123 ~Ie~I~Ilrdr---------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~ 193 (954)
.|.+|.|.+.+ |+|||+|.+.++|..|++.|+|+.+.|+.|.|.++..+.... .+
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~---~g------------- 604 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST---VG------------- 604 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc---cc-------------
Confidence 99999887654 899999999999999999999999999999999987221100 00
Q ss_pred CCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC------CCcEEEEEeCCHHH
Q 002198 194 TGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDE 267 (954)
Q Consensus 194 ~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~------srG~AFVeF~s~Ed 267 (954)
.........++|++.+++ |..+..+++++|..||.|.+|+|.+ ++|||||+|-+..+
T Consensus 605 ---------------K~~~~kk~~tKIlVRNip--FeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 605 ---------------KKKSKKKKGTKILVRNIP--FEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred ---------------cccccccccceeeeeccc--hHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 000112224566666665 5699999999999999999999974 48999999999999
Q ss_pred HHHHHHHhCCCeeCCceEEEEEecCCCC
Q 002198 268 ARRAKEGLQGRLFNDPRITIMFSSSELA 295 (954)
Q Consensus 268 A~kAie~LNG~~f~Gr~I~Vs~Ak~e~~ 295 (954)
|.+|+++|.+..|.||+|.+.|++....
T Consensus 668 a~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 668 AKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHhhcccceechhhheehhccchH
Confidence 9999999999999999999999988754
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=2.8e-22 Score=225.22 Aligned_cols=156 Identities=26% Similarity=0.473 Sum_probs=138.3
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCC--cceEE
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRG--NPIKI 88 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~G--r~I~V 88 (954)
....++|||+|||.++++++|+++|+.||.|..+. .+.++|||||+|.+.++|.+|++.|++..+.| ..|.|
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v 165 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITV 165 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 34567999999999999999999999999998776 24578999999999999999999999999877 46778
Q ss_pred EecCCCC-------------------------------------------------------------------------
Q 002198 89 EFARPAK------------------------------------------------------------------------- 95 (954)
Q Consensus 89 ~~A~p~k------------------------------------------------------------------------- 95 (954)
.|+....
T Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
T TIGR01661 166 KFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRAS 245 (352)
T ss_pred EECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCC
Confidence 7763111
Q ss_pred ----------------------CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHH
Q 002198 96 ----------------------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAA 147 (954)
Q Consensus 96 ----------------------~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~ 147 (954)
...+|||+|||+++++++|+++|++||.|++++|++| +|+|||+|.+.++|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 246 PPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred CccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 0125999999999999999999999999999999987 689999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEccCCc
Q 002198 148 EALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 148 ~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
+||+.|||..|+|+.|+|.|...+.
T Consensus 326 ~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 326 MAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999988764
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=9.6e-22 Score=232.33 Aligned_cols=169 Identities=21% Similarity=0.339 Sum_probs=136.7
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
...++|||+||++++++++|+++|++||.|.+|.++.| +|||||+|.+.++|.+|++.|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999876 689999999999999999999999999999999854
Q ss_pred cCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEE
Q 002198 169 RSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIER 248 (954)
Q Consensus 169 ~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~ 248 (954)
......... .+ ..........+|+|.|+++ ++++++|+++|+.||.|++
T Consensus 185 ~~~p~a~~~-------------------~~----------~~~~~~~~~~rLfVgnLp~--~vteedLk~lFs~FG~I~s 233 (612)
T TIGR01645 185 SNMPQAQPI-------------------ID----------MVQEEAKKFNRIYVASVHP--DLSETDIKSVFEAFGEIVK 233 (612)
T ss_pred ccccccccc-------------------cc----------cccccccccceEEeecCCC--CCCHHHHHHHHhhcCCeeE
Confidence 322110000 00 0000011223455555544 5999999999999999999
Q ss_pred EEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 249 IKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 249 VkI~~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
+++.+ +||||||+|.+.++|.+|++.|||..|+|+.|+|.++....
T Consensus 234 vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 234 CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99863 57999999999999999999999999999999999887543
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.88 E-value=2.9e-22 Score=226.73 Aligned_cols=277 Identities=23% Similarity=0.346 Sum_probs=204.3
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
+++..++||+--|...+++.||.+||+.+|+|.+|. ..+++|.|||+|.+.+....|| .|.|..+.|-+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 366789999999999999999999999999999887 5678999999999999999999 999999999999997
Q ss_pred ecCCC-----------------CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHH
Q 002198 90 FARPA-----------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDA 146 (954)
Q Consensus 90 ~A~p~-----------------k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA 146 (954)
..... .+-..||||||.+++++++|+.+|+.||.|+.|.+.+| +|||||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 65321 12234999999999999999999999999999999988 68999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEEccCCcccccCCCCCCCCC----CCC---ccC---------CCCCCC--CC---------
Q 002198 147 AEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR----DGP---IIG---------RGTGFS--DN--------- 199 (954)
Q Consensus 147 ~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r----~~~---~~g---------~~~g~~--~~--------- 199 (954)
.+|++.|||..|.|+.|+|.................... .+. ..+ .+.+.. ..
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~ 413 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLA 413 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhcc
Confidence 999999999999999999976554432221111100000 000 000 000000 00
Q ss_pred ---ccccccCC-CCCCC-------CCCCCceEEEEcCCCC-CCCCH--------HHHHHHHhhcCCEEEEEEeCC-CcEE
Q 002198 200 ---HSAYKRSS-SVGRN-------RDGPPSKILWVGYPPS-VQMDE--------QMLHNAMILFGEIERIKSYPS-RNYS 258 (954)
Q Consensus 200 ---~s~~~~~~-~~~~~-------~~~~ps~Vlvvgn~ps-~~vtE--------edLre~Fs~fG~V~~VkI~~s-rG~A 258 (954)
........ ..... .-..++.|+.+.|.-+ ...|+ +++.+.+.+||.|.+|.+-+. .|+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~V 493 (549)
T KOG0147|consen 414 KLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCV 493 (549)
T ss_pred ccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceE
Confidence 00000000 00000 0114556666654321 11222 678888899999999999654 5999
Q ss_pred EEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 259 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 259 FVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
||.|.+.++|..|+.+|||++|.|+.|++.|-..+
T Consensus 494 Yvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 494 YVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred EEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 99999999999999999999999999999997443
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.88 E-value=1.4e-21 Score=230.61 Aligned_cols=212 Identities=24% Similarity=0.349 Sum_probs=159.9
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCC-eeEEE-------ecCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCcceE
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVT-------TYSSRSFAFVYFKRVEDAKAAKDALQG--SDFRGNPIK 87 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~-I~sV~-------~gkskG~AFVeF~s~edA~~AL~~Lng--~~L~Gr~I~ 87 (954)
.+.++|||+|||.++|+++|.+.|++++. +.++. ..+++|||||+|.+.++|..|++.|+. ..+.|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 45789999999999999999999999964 33333 246799999999999999999988764 457899999
Q ss_pred EEecCCCC--------CCCeEEEeCCCccCCHHHHHhhhccc--cceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCce
Q 002198 88 IEFARPAK--------PSKHLWVGGISQTVSKEELEEGFLKF--GNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQ 157 (954)
Q Consensus 88 V~~A~p~k--------~srkLfVgNLP~~vTeedL~elFskf--G~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~ 157 (954)
|.|+.+.. ..++|||+||++++|+++|+++|++| |.|++|.++ +++|||+|++.++|.+|++.||+..
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 99997643 25789999999999999999999999 999999876 5699999999999999999999999
Q ss_pred eCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHH
Q 002198 158 IGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLH 237 (954)
Q Consensus 158 i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLr 237 (954)
|.|+.|+|.|++........ ... ++.+.......... .. -.......+..+++++.+ +..+++-+.
T Consensus 294 i~Gr~I~V~~Akp~~~~~~~--~~~---------rg~gg~~~~~~~~~-~~-~g~~~sp~s~~~~~g~~~-~~~~~~~~~ 359 (578)
T TIGR01648 294 LEGSEIEVTLAKPVDKKSYV--RYT---------RGTGGRGKERQAAR-QS-LGQVYDPASRSLAYEDYY-YHPPYAPSL 359 (578)
T ss_pred ECCEEEEEEEccCCCccccc--ccc---------cccCCCcccccccc-cc-cCcccCcccccccccccc-ccccccchh
Confidence 99999999999765432110 000 00000000000000 00 011123345566666665 678899999
Q ss_pred HHHhhcCC
Q 002198 238 NAMILFGE 245 (954)
Q Consensus 238 e~Fs~fG~ 245 (954)
++|...|.
T Consensus 360 ~~f~~~g~ 367 (578)
T TIGR01648 360 HFPRMPGP 367 (578)
T ss_pred hccccCcc
Confidence 99988875
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.86 E-value=6e-21 Score=222.21 Aligned_cols=169 Identities=24% Similarity=0.402 Sum_probs=139.3
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
+....++|||+|||..+++++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|| .|+|..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEe
Confidence 3456789999999999999999999999999999999986 589999999999999999 599999999999998
Q ss_pred EccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCE
Q 002198 167 FLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI 246 (954)
Q Consensus 167 ~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V 246 (954)
+............. .........+.|+|++++ ..++|++|+++|+.||.|
T Consensus 164 ~~~~~~~~~~~~~~-----------------------------~~~~~~p~~~~l~v~nl~-~~~te~~l~~~f~~~G~i 213 (457)
T TIGR01622 164 SSQAEKNRAAKAAT-----------------------------HQPGDIPNFLKLYVGNLH-FNITEQELRQIFEPFGDI 213 (457)
T ss_pred ecchhhhhhhhccc-----------------------------ccCCCCCCCCEEEEcCCC-CCCCHHHHHHHHHhcCCe
Confidence 76554322110000 000011124556666666 469999999999999999
Q ss_pred EEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 247 ERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 247 ~~VkI~------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
..|.+. .++|||||+|.+.++|.+|++.|||..|.|++|.|.|++.
T Consensus 214 ~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 214 EDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 999986 4579999999999999999999999999999999999973
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=5.6e-21 Score=210.16 Aligned_cols=164 Identities=26% Similarity=0.461 Sum_probs=140.1
Q ss_pred CCCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCc-eeCC--eE
Q 002198 92 RPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGR-QIGG--EQ 162 (954)
Q Consensus 92 ~p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~-~i~G--r~ 162 (954)
.++.+.-++|||-||..++|+||+++|++||.|.+|.|++| +|+|||.|.+.++|.+|+.+||.. .|-| ..
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34556789999999999999999999999999999999999 489999999999999999999886 5655 78
Q ss_pred EEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhh
Q 002198 163 LRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMIL 242 (954)
Q Consensus 163 I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~ 242 (954)
|.|++++.+..+. ...+.|||+.+. ..++|.+++++|++
T Consensus 109 vqvk~Ad~E~er~----------------------------------------~~e~KLFvg~ls-K~~te~evr~iFs~ 147 (510)
T KOG0144|consen 109 VQVKYADGERERI----------------------------------------VEERKLFVGMLS-KQCTENEVREIFSR 147 (510)
T ss_pred eeecccchhhhcc----------------------------------------ccchhhhhhhcc-ccccHHHHHHHHHh
Confidence 8898887654221 123447788877 47999999999999
Q ss_pred cCCEEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCe-eCC--ceEEEEEecCCCCC
Q 002198 243 FGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRL-FND--PRITIMFSSSELAP 296 (954)
Q Consensus 243 fG~V~~VkI~~-----srG~AFVeF~s~EdA~kAie~LNG~~-f~G--r~I~Vs~Ak~e~~~ 296 (954)
||.|++|.|.+ +||||||+|.+.|-|..||+.|||.. +.| .+|.|+|+..+..+
T Consensus 148 fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 148 FGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred hCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 99999999975 59999999999999999999999985 444 68999999776544
No 28
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.84 E-value=2.4e-19 Score=196.20 Aligned_cols=286 Identities=19% Similarity=0.262 Sum_probs=205.0
Q ss_pred CCCCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC--ccCCcceEE
Q 002198 11 AYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS--DFRGNPIKI 88 (954)
Q Consensus 11 ~~~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~--~L~Gr~I~V 88 (954)
........+++.|.+||||.+++|+||.+++.+||.|..+...+.+..|||+|.+.+.|...+...... .++|+.|.|
T Consensus 19 ~~~~~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 19 YTQRSMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cccccccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceee
Confidence 334444568999999999999999999999999999999998888889999999999999866444332 378888888
Q ss_pred EecCC-----------------------------------CC--------CCCeEEEeCCCccCCHHHHHhhhcccccee
Q 002198 89 EFARP-----------------------------------AK--------PSKHLWVGGISQTVSKEELEEGFLKFGNIE 125 (954)
Q Consensus 89 ~~A~p-----------------------------------~k--------~srkLfVgNLP~~vTeedL~elFskfG~Ie 125 (954)
.|+.- .. ..-+++|+++-+.++-+-|..+|++||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 77630 00 112577899999999999999999999999
Q ss_pred EEEEeec-CCe-eEEecCCHHHHHHHHHHhCCceeC--CeEEEEEEccCCcccccCCCCCCCCCCCC--ccC--------
Q 002198 126 DFKFLKD-GNT-AFVEYSRLEDAAEALKNINGRQIG--GEQLRVDFLRSQPSRREQWPNSHDARDGP--IIG-------- 191 (954)
Q Consensus 126 ~I~Ilrd-rG~-AFVeF~t~EdA~~AIe~Lng~~i~--Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~--~~g-------- 191 (954)
+|.-... .+| |.|+|.+.+.|..|.-.|+|..|. .+.|+|+|++-..-.-+-..+..++.... ..+
T Consensus 179 KIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~ 258 (492)
T KOG1190|consen 179 KIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQ 258 (492)
T ss_pred EEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccch
Confidence 8876544 555 999999999999999999999774 48899987664321100000000000000 000
Q ss_pred --------C--CCCCCC-Cccc-cccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEe-CCCcEE
Q 002198 192 --------R--GTGFSD-NHSA-YKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY-PSRNYS 258 (954)
Q Consensus 192 --------~--~~g~~~-~~s~-~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~-~srG~A 258 (954)
. ..|... .... ...............+.++.+.++.+..+|.+.|..+|..||+|.+|+|+ +.+.-|
T Consensus 259 ~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~A 338 (492)
T KOG1190|consen 259 LMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNA 338 (492)
T ss_pred hhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcce
Confidence 0 000000 0000 00000000000001246666666666789999999999999999999997 445799
Q ss_pred EEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCC
Q 002198 259 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 259 FVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
+|+|.+...|.-|++.|+|.++.|++|+|.++|.....
T Consensus 339 LIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 339 LIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred eeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 99999999999999999999999999999999886543
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3e-20 Score=205.45 Aligned_cols=156 Identities=27% Similarity=0.493 Sum_probs=140.0
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCC-eeEEE-------ecCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCcceE
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVT-------TYSSRSFAFVYFKRVEDAKAAKDALQG--SDFRGNPIK 87 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~-I~sV~-------~gkskG~AFVeF~s~edA~~AL~~Lng--~~L~Gr~I~ 87 (954)
..+|+|||+|||.+.++++|.+.|++.++ |++|. ..++||||||+|.+...|.-|.++|-. ..++|..|.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 46899999999999999999999999985 66666 467899999999999999999887643 458899999
Q ss_pred EEecCCCCC--------CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 88 IEFARPAKP--------SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 88 V~~A~p~k~--------srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
|.||.|... .+.|||+||+.++|+|.|+++|++||.|++|+.++| ||||+|.+.++|.+||+.+||+.|.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--eeEEeecchHHHHHHHHHhcCceec
Confidence 999987543 468999999999999999999999999999998866 9999999999999999999999999
Q ss_pred CeEEEEEEccCCcccc
Q 002198 160 GEQLRVDFLRSQPSRR 175 (954)
Q Consensus 160 Gr~I~V~~a~sk~~~~ 175 (954)
|..|.|.+++....++
T Consensus 320 G~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 320 GSPIEVTLAKPVDKKK 335 (506)
T ss_pred CceEEEEecCChhhhc
Confidence 9999999999875444
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.82 E-value=3.4e-19 Score=210.14 Aligned_cols=186 Identities=17% Similarity=0.313 Sum_probs=135.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccc------------cceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCe
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKF------------GNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGE 161 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskf------------G~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr 161 (954)
....++|||||||+++|+++|+++|..+ +.|..+.+.+++|||||+|.+.++|..|| .|+|..|.|+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~ 250 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNV 250 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCc
Confidence 4567899999999999999999999874 46778888889999999999999999999 6999999999
Q ss_pred EEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHh
Q 002198 162 QLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMI 241 (954)
Q Consensus 162 ~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs 241 (954)
.|+|.................... ......... ............+.|||++++ ..+++++|+++|+
T Consensus 251 ~l~v~r~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~l~v~nlp-~~~~~~~l~~~f~ 317 (509)
T TIGR01642 251 FLKIRRPHDYIPVPQITPEVSQKN-----------PDDNAKNVE-KLVNSTTVLDSKDRIYIGNLP-LYLGEDQIKELLE 317 (509)
T ss_pred eeEecCccccCCccccCCCCCCCC-----------Ccccccccc-cccccccCCCCCCEEEEeCCC-CCCCHHHHHHHHH
Confidence 999975443221110000000000 000000000 000000111223445566665 4699999999999
Q ss_pred hcCCEEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 242 LFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 242 ~fG~V~~VkI~~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
.||.|+.+.+.. ++|||||+|.+.++|.+|++.|||..|.|++|.|.++...
T Consensus 318 ~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 318 SFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred hcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999999998853 5799999999999999999999999999999999999643
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=9.9e-20 Score=192.33 Aligned_cols=151 Identities=24% Similarity=0.441 Sum_probs=136.1
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcccccC
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~ 177 (954)
.+|||||||..+++.+|+.+|++||+|.+|.|+ |++|||..++...|+.||+.||+.+|+|..|.|+.++++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk---- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK---- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC----
Confidence 479999999999999999999999999999999 56999999999999999999999999999999998776532
Q ss_pred CCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcE
Q 002198 178 WPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNY 257 (954)
Q Consensus 178 ~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~ 257 (954)
.+..++++|.. ..++.+||+..|++||.|.+++|. ++|
T Consensus 77 ---------------------------------------~stkl~vgNis-~tctn~ElRa~fe~ygpviecdiv--kdy 114 (346)
T KOG0109|consen 77 ---------------------------------------ASTKLHVGNIS-PTCTNQELRAKFEKYGPVIECDIV--KDY 114 (346)
T ss_pred ---------------------------------------CccccccCCCC-ccccCHHHhhhhcccCCceeeeee--cce
Confidence 12335566655 458999999999999999999999 899
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCC
Q 002198 258 SFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 258 AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
+||.|+-.++|..|++.|||++|.|++++|..+.++...
T Consensus 115 ~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 115 AFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred eEEEEeeccchHHHHhcccccccccceeeeeeecccccc
Confidence 999999999999999999999999999999999887653
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=191.68 Aligned_cols=149 Identities=30% Similarity=0.560 Sum_probs=139.0
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC-CCCCCe
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP-AKPSKH 99 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p-~k~srk 99 (954)
-+|||+|||..+++.+|+.+|.+||+|.++.+- |+||||..+++..|+.|+..|++..|.|..|.|+.++. .+.+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stk 80 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTK 80 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccc
Confidence 479999999999999999999999999999764 57999999999999999999999999999999999874 357889
Q ss_pred EEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002198 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (954)
Q Consensus 100 LfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~ 173 (954)
|+||||.+.++.+||++.|++||+|.+|+|.+ +++||.|...++|..|++.|++..|.|+.++|..+++.-.
T Consensus 81 l~vgNis~tctn~ElRa~fe~ygpviecdivk--dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYGPVIECDIVK--DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred cccCCCCccccCHHHhhhhcccCCceeeeeec--ceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 99999999999999999999999999999984 5999999999999999999999999999999999887653
No 33
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.79 E-value=2e-17 Score=182.05 Aligned_cols=147 Identities=21% Similarity=0.343 Sum_probs=125.6
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHh-ccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFG-KFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs-~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
..+.+||.|||+++.+.||+++|. +-|+|+.|. .++.||+|.|+|+++|.+++|++.|++..+.||.|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 355699999999999999999998 557888776 68999999999999999999999999999999999996542
Q ss_pred C-------------------------------------------------------------------------------
Q 002198 93 P------------------------------------------------------------------------------- 93 (954)
Q Consensus 93 p------------------------------------------------------------------------------- 93 (954)
.
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 0
Q ss_pred ---------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 94 ---------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 94 ---------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
.....++||+||.+.+..+.|++.|.-.|.|+.|.+--| +|+|.++|...-+|..||..+++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 112457999999999999999999999999999988766 578999999999999999988875544
Q ss_pred CeEEEE
Q 002198 160 GEQLRV 165 (954)
Q Consensus 160 Gr~I~V 165 (954)
.++..+
T Consensus 283 ~~~~~~ 288 (608)
T KOG4212|consen 283 DRRMTV 288 (608)
T ss_pred ccccee
Confidence 444444
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.79 E-value=6.9e-19 Score=175.76 Aligned_cols=163 Identities=23% Similarity=0.386 Sum_probs=138.2
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
.....+||||||+..++++-|+++|-+.|+|.++.+.+| +|||||+|.++|||+.|++-||...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 345689999999999999999999999999999999987 58999999999999999999999999999999988
Q ss_pred ccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEE
Q 002198 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 247 (954)
Q Consensus 168 a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~ 247 (954)
+...... -....++++.++.+ .++|..|.+.|+.||.+.
T Consensus 86 as~~~~n---------------------------------------l~vganlfvgNLd~--~vDe~~L~dtFsafG~l~ 124 (203)
T KOG0131|consen 86 ASAHQKN---------------------------------------LDVGANLFVGNLDP--EVDEKLLYDTFSAFGVLI 124 (203)
T ss_pred ccccccc---------------------------------------ccccccccccccCc--chhHHHHHHHHHhccccc
Confidence 7622110 01114555555554 599999999999999876
Q ss_pred EE-EEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCCC
Q 002198 248 RI-KSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 297 (954)
Q Consensus 248 ~V-kI~------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~g 297 (954)
.. +++ ..++||||.|++.|.+.+|++.|||..+++++|+|.|+..+...+
T Consensus 125 ~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 125 SPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 52 332 457899999999999999999999999999999999998887665
No 35
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=3.9e-18 Score=197.73 Aligned_cols=258 Identities=23% Similarity=0.332 Sum_probs=190.6
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC-
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP- 93 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p- 93 (954)
++..++.+|||+|||+..||+||..+| |||.|...+.|.+|...+++..+.|+.+.|....+
T Consensus 222 e~i~etgrlf~RNLpyt~~eed~~~lf-----------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k 284 (725)
T KOG0110|consen 222 EDISETGRLFVRNLPYTSTEEDLLKLF-----------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEK 284 (725)
T ss_pred hHHHhhhhhhhccCCccccHHHHHHhh-----------------HHHhhhhhHHHHhhhhhccccccccceeeecCcchh
Confidence 446788999999999999999999999 89999999999999999999999999988743210
Q ss_pred --------------------------------------------------------------------------------
Q 002198 94 -------------------------------------------------------------------------------- 93 (954)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (954)
T Consensus 285 ~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~ 364 (725)
T KOG0110|consen 285 STAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEV 364 (725)
T ss_pred hhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhh
Confidence
Q ss_pred -----------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCc
Q 002198 94 -----------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR 156 (954)
Q Consensus 94 -----------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~ 156 (954)
......|+|+|||..+..++|..+|..||.|..+.+.+....++|+|.+..+|..|++.|...
T Consensus 365 ~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklays 444 (725)
T KOG0110|consen 365 RRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYS 444 (725)
T ss_pred hhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchh
Confidence 011357999999999999999999999999999966643445999999999999999999999
Q ss_pred eeCCeEEEEEEccCCcccccC--CCCCCCCCCC----C----ccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCC
Q 002198 157 QIGGEQLRVDFLRSQPSRREQ--WPNSHDARDG----P----IIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYP 226 (954)
Q Consensus 157 ~i~Gr~I~V~~a~sk~~~~~~--~~~~~~~r~~----~----~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ 226 (954)
.+....+++.|+......... .......... . ....+.-..+...................++ |++.|+
T Consensus 445 r~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNl 523 (725)
T KOG0110|consen 445 RFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNL 523 (725)
T ss_pred hhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh-hhhhcC
Confidence 999999999887665433110 0000000000 0 0000000000000000000000011112223 677777
Q ss_pred CCCCCCHHHHHHHHhhcCCEEEEEEeC---------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEec
Q 002198 227 PSVQMDEQMLHNAMILFGEIERIKSYP---------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 291 (954)
Q Consensus 227 ps~~vtEedLre~Fs~fG~V~~VkI~~---------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak 291 (954)
. ++.+.++|..+|.++|.|.++.|.. +.|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 524 n-f~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 524 N-FDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred C-cccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 6 7799999999999999999998853 23999999999999999999999999999999999997
No 36
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.76 E-value=6.7e-17 Score=177.25 Aligned_cols=269 Identities=23% Similarity=0.356 Sum_probs=204.2
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-ecCCCcE-EEEEeCCHHHHHHHHHHhcCCccCCc--ceEEEecC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-TYSSRSF-AFVYFKRVEDAKAAKDALQGSDFRGN--PIKIEFAR 92 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-~gkskG~-AFVeF~s~edA~~AL~~Lng~~L~Gr--~I~V~~A~ 92 (954)
...--+++|.++-+.+|-+-|+.+|++||.|..|. ..++.+| |+|.|.+.+.|..|...|+|..|.+. .++|.+++
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 44556788999999999999999999999999988 4566666 99999999999999999999998765 56666553
Q ss_pred ------------------C---CC---------------------------------------------CCCeEEEeCCC
Q 002198 93 ------------------P---AK---------------------------------------------PSKHLWVGGIS 106 (954)
Q Consensus 93 ------------------p---~k---------------------------------------------~srkLfVgNLP 106 (954)
| .. .+..|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0 00 13678888886
Q ss_pred -ccCCHHHHHhhhccccceeEEEEeecCC-eeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcccccCCCCCCCC
Q 002198 107 -QTVSKEELEEGFLKFGNIEDFKFLKDGN-TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDA 184 (954)
Q Consensus 107 -~~vTeedL~elFskfG~Ie~I~IlrdrG-~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~ 184 (954)
+.+|.+.|..+|+-||.|.+|+|+.+++ .|.|++.+...|..|++.|+|..|.|+.|+|.+++...-.-........
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~- 385 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQ- 385 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccc-
Confidence 5689999999999999999999998864 6999999999999999999999999999999998876432221111100
Q ss_pred CCCCccCCCCCCCC-CccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCE-EEEEEe-CCCcEEEEE
Q 002198 185 RDGPIIGRGTGFSD-NHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI-ERIKSY-PSRNYSFVE 261 (954)
Q Consensus 185 r~~~~~g~~~g~~~-~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V-~~VkI~-~srG~AFVe 261 (954)
+-+..+.. .....++++........+++..+...+.+. +++||+|++.|..-|.. +-.+++ +++.+|++.
T Consensus 386 ------glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~-svsee~lk~~f~~~g~~vkafkff~kd~kmal~q 458 (492)
T KOG1190|consen 386 ------GLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPP-SVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQ 458 (492)
T ss_pred ------cccccCCCCchhhccCcccccccccCCchhheeeccCCc-ccchhHHHHhhhcCCceEEeeeecCCCcceeecc
Confidence 00111111 111222333333333445666666666653 59999999999988865 555554 578999999
Q ss_pred eCCHHHHHHHHHHhCCCeeCC-ceEEEEEecCC
Q 002198 262 FRSVDEARRAKEGLQGRLFND-PRITIMFSSSE 293 (954)
Q Consensus 262 F~s~EdA~kAie~LNG~~f~G-r~I~Vs~Ak~e 293 (954)
+.++|+|..|+-.++...+++ ..++|+|+++.
T Consensus 459 ~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 459 LESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 999999999999999998885 59999999763
No 37
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.76 E-value=2.5e-16 Score=170.85 Aligned_cols=283 Identities=22% Similarity=0.322 Sum_probs=206.3
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHH--hcCCccCCcceEEEe
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDA--LQGSDFRGNPIKIEF 90 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~--Lng~~L~Gr~I~V~~ 90 (954)
+--+.+++-.|.|+||-..++|.||.+.++.||.|.-|.....+..|.|+|++.+.|++++.. -+...+.|..-.+.+
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 344577899999999999999999999999999999999888899999999999999999843 234456777666655
Q ss_pred cC------C----CCCCCeEE--EeCCCccCCHHHHHhhhccccceeEEEEeecCCe-eEEecCCHHHHHHHHHHhCCce
Q 002198 91 AR------P----AKPSKHLW--VGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT-AFVEYSRLEDAAEALKNINGRQ 157 (954)
Q Consensus 91 A~------p----~k~srkLf--VgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~-AFVeF~t~EdA~~AIe~Lng~~ 157 (954)
+. + ...+..|. |-|--+.+|-+-|..+....|+|.+|.|++..|. |.|||++.+.|++|.+.|||-.
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGAD 183 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGAD 183 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccc
Confidence 52 1 11233333 4555688999999999999999999999988765 9999999999999999999997
Q ss_pred eC--CeEEEEEEccCCcccc-----cCC------------CCCC---CCCC-----CCccCCCCCCCCCccc--------
Q 002198 158 IG--GEQLRVDFLRSQPSRR-----EQW------------PNSH---DARD-----GPIIGRGTGFSDNHSA-------- 202 (954)
Q Consensus 158 i~--Gr~I~V~~a~sk~~~~-----~~~------------~~~~---~~r~-----~~~~g~~~g~~~~~s~-------- 202 (954)
|. .+.|+|+|++...-.- +.| ++.. ..+. .....++.+.......
T Consensus 184 IYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~ 263 (494)
T KOG1456|consen 184 IYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHP 263 (494)
T ss_pred ccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCC
Confidence 74 5999999998764211 111 0000 0000 0000111101110000
Q ss_pred -cc--cCC------CCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCC-cEEEEEeCCHHHHHHHH
Q 002198 203 -YK--RSS------SVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSR-NYSFVEFRSVDEARRAK 272 (954)
Q Consensus 203 -~~--~~~------~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~sr-G~AFVeF~s~EdA~kAi 272 (954)
.. +.. ...........-+++-|+.. ..++-+.|.++|..||.|++|++++.+ |.|+||+.+.++.++|+
T Consensus 264 ~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh-~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v 342 (494)
T KOG1456|consen 264 PPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDH-GKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAV 342 (494)
T ss_pred CCCCCccccccCCCCCCCCCCCCCcEEEEEeccc-cccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHH
Confidence 00 000 00111223344556666665 467888999999999999999999875 89999999999999999
Q ss_pred HHhCCCeeCCceEEEEEecCCCCC
Q 002198 273 EGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 273 e~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
..||+..+.|.+|.|++++.....
T Consensus 343 ~hLnn~~lfG~kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 343 THLNNIPLFGGKLNVCVSKQNFVS 366 (494)
T ss_pred HHhccCccccceEEEeeccccccc
Confidence 999999999999999999887654
No 38
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=9.4e-18 Score=189.04 Aligned_cols=184 Identities=20% Similarity=0.285 Sum_probs=145.7
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
..+|||++||++++.++|.++|+.+|+|..+.+..+ ||||||+|.-.||+++|++..++..|.||.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 379999999999999999999999999999999866 68899999999999999999999999999999999987
Q ss_pred CcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEE
Q 002198 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK 250 (954)
Q Consensus 171 k~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~Vk 250 (954)
+........+........ ..........-..+..-|||.|+| |.+.+.+|+.+|+.||.|.+|.
T Consensus 85 R~r~e~~~~~e~~~veK~---------------~~q~~~~k~~v~~~k~rLIIRNLP-f~~k~~dLk~vFs~~G~V~Ei~ 148 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKP---------------IEQKRPTKAKVDLPKWRLIIRNLP-FKCKKPDLKNVFSNFGKVVEIV 148 (678)
T ss_pred cccchhcccccchhhhcc---------------cccCCcchhhccCccceEEeecCC-cccCcHHHHHHHhhcceEEEEE
Confidence 654332211111100000 000000001112235557777777 7899999999999999999999
Q ss_pred EeCC-----CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCC
Q 002198 251 SYPS-----RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 251 I~~s-----rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
|.+. .|||||.|....+|.+|++.+||.+|.||+|-|.||-.+..-
T Consensus 149 IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 149 IPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred cccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 9732 489999999999999999999999999999999999777653
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=9.3e-18 Score=174.75 Aligned_cols=159 Identities=26% Similarity=0.440 Sum_probs=139.0
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
.....|.|.-||..+|++||+.+|...|+|++|++++|| ||+||.|.+.+||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 345678999999999999999999999999999999996 78999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEE
Q 002198 169 RSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIER 248 (954)
Q Consensus 169 ~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~ 248 (954)
+..... ....++++-|++.. .+..||+.+|++||.|.-
T Consensus 119 RPSs~~----------------------------------------Ik~aNLYvSGlPkt--MtqkelE~iFs~fGrIIt 156 (360)
T KOG0145|consen 119 RPSSDS----------------------------------------IKDANLYVSGLPKT--MTQKELEQIFSPFGRIIT 156 (360)
T ss_pred cCChhh----------------------------------------hcccceEEecCCcc--chHHHHHHHHHHhhhhhh
Confidence 875421 12257788888875 899999999999998875
Q ss_pred EEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCC--ceEEEEEecCCCC
Q 002198 249 IKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELA 295 (954)
Q Consensus 249 VkI~------~srG~AFVeF~s~EdA~kAie~LNG~~f~G--r~I~Vs~Ak~e~~ 295 (954)
-+|. -+||.+||.|+..+||++||+.|||.+-.| .+|.|.|++....
T Consensus 157 SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 157 SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred hhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 5553 469999999999999999999999998776 5899999977643
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.75 E-value=7.4e-18 Score=168.41 Aligned_cols=157 Identities=25% Similarity=0.443 Sum_probs=138.5
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
.....+|||+||+..++++-|+++|-+.|.|++|. +...+|||||+|.++|||.=|++-|+...|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34567999999999999999999999999999998 345789999999999999999999999999999999988
Q ss_pred cCCCC----CCCeEEEeCCCccCCHHHHHhhhccccceeEE-EEeec------CCeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 91 ARPAK----PSKHLWVGGISQTVSKEELEEGFLKFGNIEDF-KFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 91 A~p~k----~srkLfVgNLP~~vTeedL~elFskfG~Ie~I-~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
+.... -..+|||+||.+.+++.-|.+.|+.||.+... .++++ +++|||-|.+.|.+.+|++.+||+.++
T Consensus 86 as~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 86 ASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred cccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 75222 24689999999999999999999999976652 44444 578999999999999999999999999
Q ss_pred CeEEEEEEccCCcc
Q 002198 160 GEQLRVDFLRSQPS 173 (954)
Q Consensus 160 Gr~I~V~~a~sk~~ 173 (954)
+++|.|.++..+..
T Consensus 166 nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 166 NRPITVSYAFKKDT 179 (203)
T ss_pred CCceEEEEEEecCC
Confidence 99999999877653
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=4.3e-16 Score=175.03 Aligned_cols=270 Identities=19% Similarity=0.220 Sum_probs=179.8
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
+..+.-.|.+++||.++|++||++||+.++ |+.+. .++..|-|||+|.++||+++|+ +++...+..|+|.|..+
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEcc
Confidence 466778899999999999999999999995 77666 4888999999999999999999 88999999999999776
Q ss_pred CCC--------------CCCCeEEEeCCCccCCHHHHHhhhccccceeE-EEEeec-----CCeeEEecCCHHHHHHHHH
Q 002198 92 RPA--------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIED-FKFLKD-----GNTAFVEYSRLEDAAEALK 151 (954)
Q Consensus 92 ~p~--------------k~srkLfVgNLP~~vTeedL~elFskfG~Ie~-I~Ilrd-----rG~AFVeF~t~EdA~~AIe 151 (954)
... .....|-+++||+.||++||.++|+-.-.|.. |.++.+ .|.|||.|++.+.|++|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 421 13468999999999999999999998766555 444544 2569999999999999994
Q ss_pred HhCCceeCCeEEEEEEccCCcccccC--------CCCCCCC----CCC--------------C---ccCCCCCCCCCcc-
Q 002198 152 NINGRQIGGEQLRVDFLRSQPSRREQ--------WPNSHDA----RDG--------------P---IIGRGTGFSDNHS- 201 (954)
Q Consensus 152 ~Lng~~i~Gr~I~V~~a~sk~~~~~~--------~~~~~~~----r~~--------------~---~~g~~~g~~~~~s- 201 (954)
-|...|+-|-|.|-.+.....++.. .+..... +.. . ......++.....
T Consensus 164 -rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~ 242 (510)
T KOG4211|consen 164 -RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSL 242 (510)
T ss_pred -HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccc
Confidence 4677888899988654432211111 0111000 000 0 0000000000000
Q ss_pred ---------------------ccccCCC-CCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCE-EEEEEe---CCC
Q 002198 202 ---------------------AYKRSSS-VGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI-ERIKSY---PSR 255 (954)
Q Consensus 202 ---------------------~~~~~~~-~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V-~~VkI~---~sr 255 (954)
...+... ...........++...-++ +..++.++.++|+..-.+ ..|.+. +..
T Consensus 243 ~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlp-y~a~~~di~nfFspl~p~~v~i~ig~dGr~T 321 (510)
T KOG4211|consen 243 QDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLP-YDATENDIANFFSPLNPYRVHIEIGPDGRAT 321 (510)
T ss_pred cccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCC-ccCCCcchhhhcCCCCceeEEEEeCCCCccC
Confidence 0000000 0000111111333333444 679999999999977554 244443 447
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 256 NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 256 G~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
|-|+|+|.|.++|..|+.. ++..+..+-|.+...
T Consensus 322 GEAdveF~t~edav~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 322 GEADVEFATGEDAVGAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred CcceeecccchhhHhhhcc-CCcccCcceeeeccc
Confidence 8999999999999999653 555666665555444
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.4e-15 Score=152.06 Aligned_cols=177 Identities=25% Similarity=0.389 Sum_probs=136.4
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC---CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG---NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr---G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
..+++|||||||.++.+.||+++|.+||.|.+|.+.... .||||+|++..||+.||..-+|..++|+.|+|+|+..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 457899999999999999999999999999999987664 58999999999999999999999999999999998765
Q ss_pred cccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEE
Q 002198 172 PSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKS 251 (954)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI 251 (954)
.... .+.+...+.+.+...... .-.........+|+|.+++++ -+|++|++++.+-|.|+...+
T Consensus 84 r~s~--------~~~G~y~gggrgGgg~gg------~rgppsrrSe~RVvVsGLp~S--gSWQDLKDHmReaGdvCfadv 147 (241)
T KOG0105|consen 84 RSSS--------DRRGSYSGGGRGGGGGGG------RRGPPSRRSEYRVVVSGLPPS--GSWQDLKDHMREAGDVCFADV 147 (241)
T ss_pred Cccc--------ccccccCCCCCCCCCCCc------ccCCcccccceeEEEecCCCC--CchHHHHHHHHhhCCeeeeee
Confidence 4111 111111111111110000 000111334568899999987 899999999999999999988
Q ss_pred eCCCcEEEEEeCCHHHHHHHHHHhCCCeeC--CceEEEE
Q 002198 252 YPSRNYSFVEFRSVDEARRAKEGLQGRLFN--DPRITIM 288 (954)
Q Consensus 252 ~~srG~AFVeF~s~EdA~kAie~LNG~~f~--Gr~I~Vs 288 (954)
.++ |++.|+|...|+.+-|+..|+..+|. |-...|.
T Consensus 148 ~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 148 QRD-GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred ecc-cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 765 59999999999999999999988876 4444443
No 43
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=3.7e-16 Score=179.74 Aligned_cols=259 Identities=23% Similarity=0.418 Sum_probs=198.5
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhcc-----------C-CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCc
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKF-----------G-ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN 84 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~y-----------G-~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr 84 (954)
....+.++|+++|..++|+.+..||..- | .++.+.....+++|||+|.+.++|.+|+ .+++..+.|.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~f~g~ 250 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGIIFEGR 250 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchhhCCC
Confidence 3457889999999999999999999854 2 3777778889999999999999999999 8899999999
Q ss_pred ceEEEecCC--------------------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------
Q 002198 85 PIKIEFARP--------------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------ 132 (954)
Q Consensus 85 ~I~V~~A~p--------------------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------ 132 (954)
.+++.-... .....+++|++||..+++..++++...||.+....+.++
T Consensus 251 ~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~s 330 (500)
T KOG0120|consen 251 PLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNS 330 (500)
T ss_pred CceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccc
Confidence 887743210 112568999999999999999999999999999988877
Q ss_pred CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCC
Q 002198 133 GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRN 212 (954)
Q Consensus 133 rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~ 212 (954)
+|+||.+|.+......|+..|||..+++++|.|..+.........+..... + ....-......
T Consensus 331 kg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~-------~----------~~~~i~~~~~q 393 (500)
T KOG0120|consen 331 KGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQ-------S----------QVPGIPLLMTQ 393 (500)
T ss_pred cceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccc-------c----------ccccchhhhcc
Confidence 678999999999999999999999999999999887765433322111000 0 00000001112
Q ss_pred CCCCCceEEEEcCCCCC-C-CCH-------HHHHHHHhhcCCEEEEEEeC---------CCcEEEEEeCCHHHHHHHHHH
Q 002198 213 RDGPPSKILWVGYPPSV-Q-MDE-------QMLHNAMILFGEIERIKSYP---------SRNYSFVEFRSVDEARRAKEG 274 (954)
Q Consensus 213 ~~~~ps~Vlvvgn~ps~-~-vtE-------edLre~Fs~fG~V~~VkI~~---------srG~AFVeF~s~EdA~kAie~ 274 (954)
..+.+++|+++-+.-.- + .++ |+++..+++||.|..|++.+ +.|..||+|++.++|++|+++
T Consensus 394 ~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~ 473 (500)
T KOG0120|consen 394 MAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE 473 (500)
T ss_pred cCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH
Confidence 24455666655432110 0 111 56677788999999999963 368999999999999999999
Q ss_pred hCCCeeCCceEEEEEecCC
Q 002198 275 LQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 275 LNG~~f~Gr~I~Vs~Ak~e 293 (954)
|+|++|+|+.|...|...+
T Consensus 474 L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 474 LTGRKFANRTVVASYYDED 492 (500)
T ss_pred ccCceeCCcEEEEEecCHH
Confidence 9999999999999998543
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=4.6e-16 Score=168.12 Aligned_cols=163 Identities=21% Similarity=0.351 Sum_probs=134.8
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.++||||.|.+.+.|+.|+..|..||+|.+|.+.-| +|||||+|+-.|.|..|++.|||..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 578999999999999999999999999999998755 79999999999999999999999999999999974332
Q ss_pred CcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEE
Q 002198 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK 250 (954)
Q Consensus 171 k~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~Vk 250 (954)
-...... ..........-+++++...-++ .+|+||+.+|+.||+|.+|+
T Consensus 193 mpQAQpi-----------------------------ID~vqeeAk~fnRiYVaSvHpD--LSe~DiKSVFEAFG~I~~C~ 241 (544)
T KOG0124|consen 193 MPQAQPI-----------------------------IDMVQEEAKKFNRIYVASVHPD--LSETDIKSVFEAFGEIVKCQ 241 (544)
T ss_pred CcccchH-----------------------------HHHHHHHHHhhheEEeeecCCC--ccHHHHHHHHHhhcceeeEE
Confidence 2110000 0000011223468888888776 89999999999999999999
Q ss_pred Ee------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 251 SY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 251 I~------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
+- .+|||+||+|.+...-..|+..||-..++|.-++|--.
T Consensus 242 LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 242 LARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred eeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 85 35899999999999999999999999999999998544
No 45
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=3.3e-15 Score=149.48 Aligned_cols=149 Identities=26% Similarity=0.471 Sum_probs=130.6
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~---gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
.+.+|+|||+|||.++.|.||.++|.+||.|..|.. .....||||+|++..||+.||.-.++..+.|..|+|++++-
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 356899999999999999999999999999998873 23468999999999999999999999999999999999862
Q ss_pred -----------------------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHH
Q 002198 94 -----------------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLE 144 (954)
Q Consensus 94 -----------------------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~E 144 (954)
.....+|.|.+||.+.+++||++.+.+.|.|....+.+| |.+.|+|...|
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~e 161 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKE 161 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehh
Confidence 123568999999999999999999999999999998886 59999999999
Q ss_pred HHHHHHHHhCCceeC--CeEEEEE
Q 002198 145 DAAEALKNINGRQIG--GEQLRVD 166 (954)
Q Consensus 145 dA~~AIe~Lng~~i~--Gr~I~V~ 166 (954)
|.+.|++.|....+. |....+.
T Consensus 162 DMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred hHHHHHHhhccccccCcCcEeeEE
Confidence 999999999887664 4444443
No 46
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.58 E-value=5.4e-14 Score=145.82 Aligned_cols=194 Identities=26% Similarity=0.444 Sum_probs=146.1
Q ss_pred CCCeEEEeCCCccCCHHHHHh----hhccccceeEEEEeec---CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 96 PSKHLWVGGISQTVSKEELEE----GFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~e----lFskfG~Ie~I~Ilrd---rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
++.+|||.||...+.+++|+. +|+.||.|.+|...+. +|-|||.|++.+.|..|++.|+|..|.|+.++|.|+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 455999999999999999988 9999999999988855 789999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCCCCCCCCccCC-C---------CCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHH
Q 002198 169 RSQPSRREQWPNSHDARDGPIIGR-G---------TGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 238 (954)
Q Consensus 169 ~sk~~~~~~~~~~~~~r~~~~~g~-~---------~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre 238 (954)
.++.+.-....+....++...... . .+..........+... ......+++++++.++++ +++.+.|..
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~-es~~e~l~~ 165 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPS-ESESEMLSD 165 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCc-chhHHHHHH
Confidence 988654333221111110000000 0 0000000000000111 133567888999988884 688899999
Q ss_pred HHhhcCCEEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCCeeC-CceEEEEEec
Q 002198 239 AMILFGEIERIKSYPS-RNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSS 291 (954)
Q Consensus 239 ~Fs~fG~V~~VkI~~s-rG~AFVeF~s~EdA~kAie~LNG~~f~-Gr~I~Vs~Ak 291 (954)
+|.+|...++|++... ++.|||+|.+...|..|...|+|..+- ...+.|.|++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999874 689999999999999999999999987 8899998875
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.58 E-value=3.8e-15 Score=164.25 Aligned_cols=154 Identities=24% Similarity=0.430 Sum_probs=137.2
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
.+.++|||++|..++|++.|+++|..||+|.++. .+++++|+||+|++.+...++| ......|.|+.|.++.+
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRA 82 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceec
Confidence 3899999999999999999999999999998876 5779999999999999999998 55667799999999887
Q ss_pred CCCC---------CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCc
Q 002198 92 RPAK---------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGR 156 (954)
Q Consensus 92 ~p~k---------~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~ 156 (954)
.+.. ...+|||++|+.+++++++++.|++||.|.++.++.| ++++||.|.+++++.+++ ...-+
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~ 161 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFH 161 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-cccee
Confidence 6532 3569999999999999999999999999999999877 588999999999999998 45677
Q ss_pred eeCCeEEEEEEccCCcc
Q 002198 157 QIGGEQLRVDFLRSQPS 173 (954)
Q Consensus 157 ~i~Gr~I~V~~a~sk~~ 173 (954)
.|+|+.+.|..|..+..
T Consensus 162 ~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 162 DFNGKKVEVKRAIPKEV 178 (311)
T ss_pred eecCceeeEeeccchhh
Confidence 89999999999887754
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.57 E-value=9.7e-13 Score=143.33 Aligned_cols=271 Identities=25% Similarity=0.319 Sum_probs=198.2
Q ss_pred CCCCCEEEEccCC--cCCcHHHHHHHHhccCCeeEEEe-cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCc--ceEEEec
Q 002198 17 APPSSNLWVGNLS--ADTTDADLKELFGKFGALDKVTT-YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN--PIKIEFA 91 (954)
Q Consensus 17 ~~~s~tLfV~NLP--~svTE~dL~e~Fs~yG~I~sV~~-gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr--~I~V~~A 91 (954)
..++..|.+.=|. +.+|.+-|..++...|+|..|.+ .++.-.|.|+|.+.+.|.+|...|||..|... +++|+++
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence 5566666665554 56999999999999999999884 55666799999999999999999999988644 8889998
Q ss_pred CCC-----------------------------------------------------------------------------
Q 002198 92 RPA----------------------------------------------------------------------------- 94 (954)
Q Consensus 92 ~p~----------------------------------------------------------------------------- 94 (954)
+|.
T Consensus 197 kP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~ 276 (494)
T KOG1456|consen 197 KPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGR 276 (494)
T ss_pred CcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCC
Confidence 640
Q ss_pred --------CCCCeEEEeCCCc-cCCHHHHHhhhccccceeEEEEeecC-CeeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 95 --------KPSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKDG-NTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 95 --------k~srkLfVgNLP~-~vTeedL~elFskfG~Ie~I~Ilrdr-G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
.+.+.++|-+|.. .++-+.|.++|-.||.|++|++++.+ |.|.|++.+..+.++|+..||+..+.|.+|.
T Consensus 277 g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 277 GYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 0134688889975 45668899999999999999999885 7899999999999999999999999999999
Q ss_pred EEEccCCcccccCCCCCCCCCC-CCccCCCCC-CCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhh
Q 002198 165 VDFLRSQPSRREQWPNSHDARD-GPIIGRGTG-FSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMIL 242 (954)
Q Consensus 165 V~~a~sk~~~~~~~~~~~~~r~-~~~~g~~~g-~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~ 242 (954)
|.+++..--... ....-.+ .....+..+ ..+.+ ..+......+-..|+++|.--|-| ..+||+.|.++|..
T Consensus 357 v~~SkQ~~v~~~---~pflLpDgSpSfKdys~SkNnRF---ssp~qAsKNrIq~Ps~vLHffNaP-~~vtEe~l~~i~ne 429 (494)
T KOG1456|consen 357 VCVSKQNFVSPV---QPFLLPDGSPSFKDYSGSKNNRF---SSPEQASKNRIQPPSNVLHFFNAP-LGVTEEQLIGICNE 429 (494)
T ss_pred EeeccccccccC---CceecCCCCcchhhccccccccc---CChhHhhcccccCCcceeEEecCC-CccCHHHHHHHhhh
Confidence 988765422111 0000000 000000000 01111 111222334455677777665555 35999999999987
Q ss_pred cCC-EEEEEEeCCC----cEEEEEeCCHHHHHHHHHHhCCCeeCCc------eEEEEEecCCC
Q 002198 243 FGE-IERIKSYPSR----NYSFVEFRSVDEARRAKEGLQGRLFNDP------RITIMFSSSEL 294 (954)
Q Consensus 243 fG~-V~~VkI~~sr----G~AFVeF~s~EdA~kAie~LNG~~f~Gr------~I~Vs~Ak~e~ 294 (954)
-++ -.+|++++.| .-+++||++.++|..|+..||...+.+. .++++|++++.
T Consensus 430 k~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 430 KDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred cCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 653 4688888654 4799999999999999999999988753 57788886654
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.1e-14 Score=150.42 Aligned_cols=211 Identities=22% Similarity=0.390 Sum_probs=150.3
Q ss_pred CcceEEEecCCC---CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhC
Q 002198 83 GNPIKIEFARPA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNIN 154 (954)
Q Consensus 83 Gr~I~V~~A~p~---k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Ln 154 (954)
+|.|.|+.+..+ .+.++||||-|.+.-.|||++.+|..||.|++|.+++. ||+|||+|.+.-+|..||..||
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhc
Confidence 577888776432 25789999999999999999999999999999999976 7999999999999999999999
Q ss_pred Cc-eeCC--eEEEEEEccCCcccccCC-----------------------------------------------------
Q 002198 155 GR-QIGG--EQLRVDFLRSQPSRREQW----------------------------------------------------- 178 (954)
Q Consensus 155 g~-~i~G--r~I~V~~a~sk~~~~~~~----------------------------------------------------- 178 (954)
|. .+-| ..|.|+|++.++.+..+.
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~ 161 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAA 161 (371)
T ss_pred ccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHH
Confidence 97 4555 789999998775421000
Q ss_pred -------------------CCCCCCC-----CCCccCC-----CCCCCCC--------------------cccc------
Q 002198 179 -------------------PNSHDAR-----DGPIIGR-----GTGFSDN--------------------HSAY------ 203 (954)
Q Consensus 179 -------------------~~~~~~r-----~~~~~g~-----~~g~~~~--------------------~s~~------ 203 (954)
+...... .+...+- ..++... +...
T Consensus 162 ~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~ 241 (371)
T KOG0146|consen 162 QMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVAD 241 (371)
T ss_pred HHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccc
Confidence 0000000 0000000 0000000 0000
Q ss_pred ---------------------------ccCC---CCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEe-
Q 002198 204 ---------------------------KRSS---SVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY- 252 (954)
Q Consensus 204 ---------------------------~~~~---~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~- 252 (954)
..+. ..........++++|..++-+ ..+.||...|-.||.|.+.+++
T Consensus 242 ~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQE--FgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 242 PLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQE--FGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred hhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchh--hccHHHHHHhccccceeeeeeee
Confidence 0000 000111334577777777765 6788899999999999999987
Q ss_pred -----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCC
Q 002198 253 -----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 295 (954)
Q Consensus 253 -----~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~ 295 (954)
.+|+|+||.|+++..|..||.+|||..|+-++|+|.+.+++..
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 3589999999999999999999999999999999988876654
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.52 E-value=1.6e-13 Score=142.29 Aligned_cols=153 Identities=31% Similarity=0.551 Sum_probs=136.8
Q ss_pred CCCCCEEEEccCCcCCcHHHHHH----HHhccCCeeEEE---ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 17 APPSSNLWVGNLSADTTDADLKE----LFGKFGALDKVT---TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e----~Fs~yG~I~sV~---~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
..++.||||.||..-+..++|+. +|+.||.|.+|. ..+.+|.|||.|++.+.|.+|++.|+|..|.|+.++|.
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34555999999999999999998 999999999988 67889999999999999999999999999999999999
Q ss_pred ecCC-----------------------------------------------------CCCCCeEEEeCCCccCCHHHHHh
Q 002198 90 FARP-----------------------------------------------------AKPSKHLWVGGISQTVSKEELEE 116 (954)
Q Consensus 90 ~A~p-----------------------------------------------------~k~srkLfVgNLP~~vTeedL~e 116 (954)
+|+. ..++..+++.|||..++.+.+..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9851 12345799999999999999999
Q ss_pred hhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 002198 117 GFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIG-GEQLRVDFLR 169 (954)
Q Consensus 117 lFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng~~i~-Gr~I~V~~a~ 169 (954)
+|.+|....+|+++.. ++.|||+|.+...|..|...+.+..+. ...+.|.+++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999998885 678999999999999999999998886 7888887764
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=7.6e-14 Score=146.27 Aligned_cols=159 Identities=30% Similarity=0.510 Sum_probs=138.6
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCc-cCC--cc
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSD-FRG--NP 85 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~-L~G--r~ 85 (954)
+....+.++|||+.|...-.|+|++.+|..||.|+++. .+.+||+|||+|.+.-||..||..|++.. +-| ..
T Consensus 13 esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 13 ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 33344788999999999999999999999999999988 67799999999999999999999999865 333 36
Q ss_pred eEEEecCC------------------------------------------------------------------------
Q 002198 86 IKIEFARP------------------------------------------------------------------------ 93 (954)
Q Consensus 86 I~V~~A~p------------------------------------------------------------------------ 93 (954)
+.|+++..
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 77777620
Q ss_pred --------------------------------------------------------------------------------
Q 002198 94 -------------------------------------------------------------------------------- 93 (954)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (954)
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence
Q ss_pred -----------------------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEE
Q 002198 94 -----------------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFV 138 (954)
Q Consensus 94 -----------------------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFV 138 (954)
..+.++|||--||.+....||.+.|-.||.|.+.++.-|| -|+||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 1235789999999999999999999999999999998874 57999
Q ss_pred ecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 139 EYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 139 eF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
.|.+..+|..||..|||..|+=++|+|.+.+.+.
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 9999999999999999999999999998876654
No 52
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=7.2e-14 Score=146.07 Aligned_cols=164 Identities=27% Similarity=0.459 Sum_probs=127.8
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcccccC
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~ 177 (954)
.++|||+|++.+.+++|+++|..||.|.+|.+. .+++||+|.+..||..|+..++++.|.|..+.|++++........
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 479999999999999999999999999999875 578899999999999999999999999988999988765422200
Q ss_pred CCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcE
Q 002198 178 WPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNY 257 (954)
Q Consensus 178 ~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~ 257 (954)
..+ +.... ..............+++.++. ..+.+++|.++|..+|.+....+ .+++
T Consensus 80 ---------------~~~-g~r~~-----~~~~~~~p~~s~~r~~~~~~~-~r~~~qdl~d~~~~~g~~~~~~~--~~~~ 135 (216)
T KOG0106|consen 80 ---------------PRG-GDRRS-----DSRRYRPPSRTHFRLIVRNLS-LRVSWQDLKDHFRPAGEVTYVDA--RRNF 135 (216)
T ss_pred ---------------CCC-CCccc-----hhhccCCcccccceeeeccch-hhhhHHHHhhhhcccCCCchhhh--hccc
Confidence 000 00000 000011112223445555555 35888999999999999966555 5899
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeeCCceEEE
Q 002198 258 SFVEFRSVDEARRAKEGLQGRLFNDPRITI 287 (954)
Q Consensus 258 AFVeF~s~EdA~kAie~LNG~~f~Gr~I~V 287 (954)
+||+|.+.++|.+|++.|+|..++|+.|.+
T Consensus 136 ~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 136 AFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cceeehhhhhhhhcchhccchhhcCceeee
Confidence 999999999999999999999999999999
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.45 E-value=6.6e-14 Score=159.48 Aligned_cols=175 Identities=22% Similarity=0.416 Sum_probs=141.7
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
.+..+++|+--|+..++..+|.++|+.+|+|.+|.++.| +|.|||+|-+.+....|| .|.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 344678888888889999999999999999999999988 477999999999999999 8999999999999988
Q ss_pred ccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEE
Q 002198 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 247 (954)
Q Consensus 168 a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~ 247 (954)
....++.......... +.+ -..+..+ ++++|+. ++++|++|+.+|+.||.|+
T Consensus 255 sEaeknr~a~~s~a~~---------~k~-----------------~~~p~~r-l~vgnLH-fNite~~lr~ifepfg~Ie 306 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQ---------GKG-----------------FTGPMRR-LYVGNLH-FNITEDMLRGIFEPFGKIE 306 (549)
T ss_pred cHHHHHHHHhcccccc---------ccc-----------------cccchhh-hhhcccc-cCchHHHHhhhccCcccce
Confidence 7766554211100000 000 0111122 7788888 7899999999999999999
Q ss_pred EEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCCC
Q 002198 248 RIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 297 (954)
Q Consensus 248 ~VkI~------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~g 297 (954)
.|.+. .++||+||+|.+.++|++|++.|||.+|.|+.|+|..........
T Consensus 307 ~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 307 NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred eeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 99885 358999999999999999999999999999999999887766543
No 54
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.44 E-value=1.2e-12 Score=144.52 Aligned_cols=163 Identities=21% Similarity=0.352 Sum_probs=131.7
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
..++||||+|+++++++.|++.|.+||+|.+|.+++| ++++||+|++.+...+++. .....|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6789999999999999999999999999999999987 5899999999999999883 44567899999998776
Q ss_pred CCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEE
Q 002198 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERI 249 (954)
Q Consensus 170 sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~V 249 (954)
+........ ... ..+.++++-++ ..++|+++++.|.+||.|..+
T Consensus 84 ~r~~~~~~~----------------------------------~~~-~tkkiFvGG~~-~~~~e~~~r~yfe~~g~v~~~ 127 (311)
T KOG4205|consen 84 SREDQTKVG----------------------------------RHL-RTKKIFVGGLP-PDTTEEDFKDYFEQFGKVADV 127 (311)
T ss_pred Ccccccccc----------------------------------ccc-ceeEEEecCcC-CCCchHHHhhhhhccceeEee
Confidence 654322110 011 23444454444 359999999999999988888
Q ss_pred EEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCC
Q 002198 250 KSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 250 kI~------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
.++ +.++|+||.|.+++.+.+++. ..-..|+|+.+.|..|-++...
T Consensus 128 ~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 128 VIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred EEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 775 458999999999999998864 5788999999999999777654
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=2.2e-12 Score=132.81 Aligned_cols=185 Identities=21% Similarity=0.328 Sum_probs=126.1
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-C------CeeEEecCCHHHHHHHHHHhCCceeC---CeEEE
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-G------NTAFVEYSRLEDAAEALKNINGRQIG---GEQLR 164 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-r------G~AFVeF~t~EdA~~AIe~Lng~~i~---Gr~I~ 164 (954)
...++|||.+||.++...||..+|..|-..+.+.+... + -.|||.|.+..+|..|+++|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34789999999999999999999999987777776543 2 36999999999999999999999985 79999
Q ss_pred EEEccCCcccccCCCCCCCCCCCCccCCCC--------------CCCCCcccc------------------------ccC
Q 002198 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGT--------------GFSDNHSAY------------------------KRS 206 (954)
Q Consensus 165 V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~--------------g~~~~~s~~------------------------~~~ 206 (954)
++++++..+...................+. +..+...-. +.+
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 999998755432211111000000000000 000000000 000
Q ss_pred C--------CCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhC
Q 002198 207 S--------SVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP--SRNYSFVEFRSVDEARRAKEGLQ 276 (954)
Q Consensus 207 ~--------~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~--srG~AFVeF~s~EdA~kAie~LN 276 (954)
. ..........+.++|.++.++ ++|++|+.+|+.|-.....+|.. +...|||+|++.+.|..|+..|+
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~--~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPN--CTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCC--CCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhh
Confidence 0 000011112345566666665 99999999999999888887753 34699999999999999999999
Q ss_pred CCeeC
Q 002198 277 GRLFN 281 (954)
Q Consensus 277 G~~f~ 281 (954)
|..|.
T Consensus 270 g~~~s 274 (284)
T KOG1457|consen 270 GNLLS 274 (284)
T ss_pred cceec
Confidence 98764
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.40 E-value=2.3e-12 Score=132.67 Aligned_cols=142 Identities=24% Similarity=0.473 Sum_probs=117.1
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE---ecC----CCcEEEEEeCCHHHHHHHHHHhcCCccC---Ccce
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT---TYS----SRSFAFVYFKRVEDAKAAKDALQGSDFR---GNPI 86 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~---~gk----skG~AFVeF~s~edA~~AL~~Lng~~L~---Gr~I 86 (954)
..+-+||||.|||.++...+|..+|.+|-..+... +.+ .+-+|||.|.+..+|.+|++.|||..|. +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 44589999999999999999999999997666433 222 3478999999999999999999999985 7799
Q ss_pred EEEecCC-------------------------------------------------------------------------
Q 002198 87 KIEFARP------------------------------------------------------------------------- 93 (954)
Q Consensus 87 ~V~~A~p------------------------------------------------------------------------- 93 (954)
+|++++.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 9988851
Q ss_pred ----------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCC--eeEEecCCHHHHHHHHHHhCC
Q 002198 94 ----------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN--TAFVEYSRLEDAAEALKNING 155 (954)
Q Consensus 94 ----------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG--~AFVeF~t~EdA~~AIe~Lng 155 (954)
...+.+|||.||..+++|++|+.+|+.|-.....+|....| .|||+|++.+.|..||..|.|
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhc
Confidence 01145899999999999999999999997655555544444 399999999999999999988
Q ss_pred cee
Q 002198 156 RQI 158 (954)
Q Consensus 156 ~~i 158 (954)
..|
T Consensus 271 ~~~ 273 (284)
T KOG1457|consen 271 NLL 273 (284)
T ss_pred cee
Confidence 765
No 57
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.36 E-value=6.7e-12 Score=136.39 Aligned_cols=191 Identities=17% Similarity=0.268 Sum_probs=132.5
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhcccccee--------EEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeE
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIE--------DFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie--------~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~ 162 (954)
.+..|||.|||.++|-+++.++|+++|.|. .|++.++ +|-|.+.|-..|+...|++.|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 356699999999999999999999999775 5667666 467999999999999999999999999999
Q ss_pred EEEEEccCCcccccCCCCCCCCCCC----CccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCC--CCCC----
Q 002198 163 LRVDFLRSQPSRREQWPNSHDARDG----PIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPS--VQMD---- 232 (954)
Q Consensus 163 I~V~~a~sk~~~~~~~~~~~~~r~~----~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps--~~vt---- 232 (954)
|+|+.|+-+................ .........+ .++......+....+.|++.++... +..+
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~d------w~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLD------WRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcc------cCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 9999887653322111000000000 0000000000 0111111112233445555554221 1222
Q ss_pred ---HHHHHHHHhhcCCEEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 233 ---EQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 233 ---EedLre~Fs~fG~V~~VkI~--~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
+++|++-+++||.|.+|.+. ...|.+-|.|.+.++|..||+.|+|++|.||.|..+...-
T Consensus 287 ~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 36778889999999999998 5679999999999999999999999999999999877643
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.36 E-value=2.4e-12 Score=128.41 Aligned_cols=80 Identities=33% Similarity=0.503 Sum_probs=72.9
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
...+++|||+|||.++||++|+++|++||.|.+|. +++++|||||+|.+.++|++|++.|++..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45688999999999999999999999999999877 356799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002198 91 ARPAKP 96 (954)
Q Consensus 91 A~p~k~ 96 (954)
+++...
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 975444
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=9.2e-13 Score=137.83 Aligned_cols=142 Identities=28% Similarity=0.522 Sum_probs=127.8
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC-------
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP------- 93 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p------- 93 (954)
..|||++||+.+.+.||..||.+||.|.+|.. ..+|+||+|.+..+|..|+..+++..|.|..+.|+|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 57999999999999999999999999998875 447889999999999999999999999998899998873
Q ss_pred ----------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCce
Q 002198 94 ----------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQ 157 (954)
Q Consensus 94 ----------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~ 157 (954)
....+.+.|.+++..+.+.+|.+.|..+|.+....+ ..+++||+|.+.++|.+|++.|++..
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchh
Confidence 223567899999999999999999999999855544 57899999999999999999999999
Q ss_pred eCCeEEEEE
Q 002198 158 IGGEQLRVD 166 (954)
Q Consensus 158 i~Gr~I~V~ 166 (954)
+.++.|.+.
T Consensus 158 ~~~~~l~~~ 166 (216)
T KOG0106|consen 158 LNGRRISVE 166 (216)
T ss_pred hcCceeeec
Confidence 999999993
No 60
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.31 E-value=3.9e-11 Score=119.69 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=65.7
Q ss_pred eEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 219 KILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 219 ~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
+.|+|++++ ..++|++|+++|++||.|+++++. .++|||||+|.+.++|++|++.|||..|+|++|+|.|++.
T Consensus 35 ~~lfVgnL~-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 35 TKLFIGGLS-WGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CEEEEeCCC-CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 345555555 459999999999999999999986 3479999999999999999999999999999999999976
Q ss_pred CCC
Q 002198 293 ELA 295 (954)
Q Consensus 293 e~~ 295 (954)
+..
T Consensus 114 ~~~ 116 (144)
T PLN03134 114 RPS 116 (144)
T ss_pred CCC
Confidence 543
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=1.2e-10 Score=129.30 Aligned_cols=199 Identities=19% Similarity=0.240 Sum_probs=136.0
Q ss_pred CCCCCCCeEEEeCCCccCCHHHHHhhhc-cccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 92 RPAKPSKHLWVGGISQTVSKEELEEGFL-KFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 92 ~p~k~srkLfVgNLP~~vTeedL~elFs-kfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
.+.+..+.+||.|||+++.+.+|+++|. +.|+|+.|.++.| ||+|.|||+++|.+++|++.||+..+.||.|.|
T Consensus 39 n~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 39 NVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred CcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 3455677799999999999999999997 7889999999977 689999999999999999999999999999999
Q ss_pred EEccCCcccccCCCCC------------CCCCCCCccCC-CCC---CCCC-------------------------ccccc
Q 002198 166 DFLRSQPSRREQWPNS------------HDARDGPIIGR-GTG---FSDN-------------------------HSAYK 204 (954)
Q Consensus 166 ~~a~sk~~~~~~~~~~------------~~~r~~~~~g~-~~g---~~~~-------------------------~s~~~ 204 (954)
+-....+..+...... .........+. +.+ .... +..+.
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 8655433211110000 00000000000 000 0000 00000
Q ss_pred cCCCCC---CCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhC
Q 002198 205 RSSSVG---RNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQ 276 (954)
Q Consensus 205 ~~~~~~---~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~-----~srG~AFVeF~s~EdA~kAie~LN 276 (954)
...... ..-..+.++.+++.++. +.+....|++.|.--|.|+.|.+. .++|+|.++|+++-+|..||..|+
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~-~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLD-YKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccc-cccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhc
Confidence 000000 01112223334455544 568889999999999999988774 568999999999999999999999
Q ss_pred CCeeCCceEEEEEec
Q 002198 277 GRLFNDPRITIMFSS 291 (954)
Q Consensus 277 G~~f~Gr~I~Vs~Ak 291 (954)
+.-+..++..++...
T Consensus 278 ~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 278 RQGLFDRRMTVRLDR 292 (608)
T ss_pred cCCCccccceeeccc
Confidence 988888888887753
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.23 E-value=2.8e-10 Score=128.83 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=119.8
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.....|-+.+|||++|++||.++|+..+ |+.+.+.+. .|-|||+|+++||+++|++ .+...+..|-|.|-.+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 3456788999999999999999999875 666777766 4679999999999999994 577788999999987665
Q ss_pred CcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEE
Q 002198 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK 250 (954)
Q Consensus 171 k~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~Vk 250 (954)
.......... ......+.-|+-+.-+| +.|+|+||.+||+..-.|....
T Consensus 86 ~e~d~~~~~~------------------------------g~~s~~~d~vVRLRGLP-fscte~dI~~FFaGL~Iv~~gi 134 (510)
T KOG4211|consen 86 AEADWVMRPG------------------------------GPNSSANDGVVRLRGLP-FSCTEEDIVEFFAGLEIVPDGI 134 (510)
T ss_pred ccccccccCC------------------------------CCCCCCCCceEEecCCC-ccCcHHHHHHHhcCCcccccce
Confidence 4431110000 00011122334344444 6799999999999886555522
Q ss_pred -Ee-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 251 -SY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 251 -I~-----~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
+. +..|.|||+|++.+.|++|+.. |.+.|+-+-|.|.-++...
T Consensus 135 ~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 135 LLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred eeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHH
Confidence 22 4568999999999999999764 6677777888887664443
No 63
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.20 E-value=4.1e-11 Score=102.56 Aligned_cols=65 Identities=42% Similarity=0.779 Sum_probs=62.1
Q ss_pred EEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 100 LfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
|||+|||.++|+++|+++|+.||.|..+.+..+ +++|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999985 57899999999999999999999999999986
No 64
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.20 E-value=2.2e-10 Score=124.76 Aligned_cols=155 Identities=21% Similarity=0.402 Sum_probs=129.6
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeE--------EE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDK--------VT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~s--------V~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~G 83 (954)
..-++.|||.|||.++|.+++.++|++||.|.. |+ .|.-||-|++.|-..|...-|++.|++..|+|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 344677999999999999999999999997742 22 46679999999999999999999999999999
Q ss_pred cceEEEecC----------------------------------C-------CCCCCeEEEeCC--Cc--cCC-------H
Q 002198 84 NPIKIEFAR----------------------------------P-------AKPSKHLWVGGI--SQ--TVS-------K 111 (954)
Q Consensus 84 r~I~V~~A~----------------------------------p-------~k~srkLfVgNL--P~--~vT-------e 111 (954)
+.|+|+.|+ | .+..++|.|.|+ |. ..+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999998874 0 123568999998 22 222 3
Q ss_pred HHHHhhhccccceeEEEEe--ecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 112 EELEEGFLKFGNIEDFKFL--KDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 112 edL~elFskfG~Ie~I~Il--rdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
++|++..++||.|.+|.+. ...|.+-|.|.+.++|..+|+.|+|..|.||.|.......+
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 5667778999999999988 34689999999999999999999999999999998766544
No 65
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3e-11 Score=120.89 Aligned_cols=77 Identities=29% Similarity=0.604 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
..++||||||+..+++.||+.+|.+||+|.+|+|.+. .|||||||++..||+.|+..|+|+.|+|..|+|++.+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4789999999999999999999999999999999987 5899999999999999999999999999999999987654
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.19 E-value=3.7e-11 Score=102.85 Aligned_cols=65 Identities=37% Similarity=0.743 Sum_probs=60.4
Q ss_pred EEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 23 LWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 23 LfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
|||+|||.++|+++|+++|+.||.|..+.. +..+++|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988772 45789999999999999999999999999999885
No 67
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=1e-10 Score=128.09 Aligned_cols=266 Identities=16% Similarity=0.128 Sum_probs=175.3
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCC-----eeEEE-ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGA-----LDKVT-TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~-----I~sV~-~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..++..|..++||...++.+|..||+.... +.... .++..|.|.|.|.+.|.-.-|+ +.++..+.+++|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh-HhhhhhccCCceeeec
Confidence 446778899999999999999999996632 22222 5777899999999999999999 7788889999999866
Q ss_pred cCCC-------------------CCCCeEEEeCCCccCCHHHHHhhhccc----cceeEEEEeec-----CCeeEEecCC
Q 002198 91 ARPA-------------------KPSKHLWVGGISQTVSKEELEEGFLKF----GNIEDFKFLKD-----GNTAFVEYSR 142 (954)
Q Consensus 91 A~p~-------------------k~srkLfVgNLP~~vTeedL~elFskf----G~Ie~I~Ilrd-----rG~AFVeF~t 142 (954)
+..+ ..---|.+++||+++++.|+.++|..- |.++.|.+.+. .|-|||.|..
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFAC 215 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecC
Confidence 5421 112356779999999999999999632 35566666654 3669999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEE
Q 002198 143 LEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILW 222 (954)
Q Consensus 143 ~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlv 222 (954)
+++|..|+.+ |...++-|-|.+-.++...-...... . .......+.+....... ..........+.|+-
T Consensus 216 ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr--~-~s~pLi~~~~sp~~p~~-------p~~~~p~~~~kdcvR 284 (508)
T KOG1365|consen 216 EEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNR--E-VSEPLIPGLTSPLLPGG-------PARLVPPTRSKDCVR 284 (508)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHh--h-ccccccCCCCCCCCCCC-------ccccCCCCCCCCeeE
Confidence 9999999954 45566667666643332211000000 0 00000000000000000 000111222245555
Q ss_pred EcCCCCCCCCHHHHHHHHhhcCC-EEE--EEE-----eCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 223 VGYPPSVQMDEQMLHNAMILFGE-IER--IKS-----YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 223 vgn~ps~~vtEedLre~Fs~fG~-V~~--VkI-----~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
+.-++ ++.+.|+|-+||..|-. |.. |.+ .+..|-|||+|.+.|+|..|...-+.+..++|-|.|.-.+-+.
T Consensus 285 LRGLP-y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 285 LRGLP-YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred ecCCC-hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 55555 56999999999998863 322 333 2446899999999999999988877777778888887665444
Q ss_pred C
Q 002198 295 A 295 (954)
Q Consensus 295 ~ 295 (954)
.
T Consensus 364 l 364 (508)
T KOG1365|consen 364 L 364 (508)
T ss_pred H
Confidence 3
No 68
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=99.14 E-value=4.1e-11 Score=114.87 Aligned_cols=97 Identities=24% Similarity=0.385 Sum_probs=77.1
Q ss_pred eEeeeecCCcceeeeEeeeccCCcc---ccC------CceeccccccChhHHHHHhhhccCc---eEEEEcC-----CCC
Q 002198 509 WRGIIAKGGTPVCRARCVPFGKGIE---SEL------PEVVNCSARTGLDMLAKHYAEAIGF---DIVFFLP-----DSE 571 (954)
Q Consensus 509 w~g~iaKgG~pvC~a~c~~v~k~~~---~~l------Pe~ldc~aRt~ldml~kh~~~a~~~---~vvff~p-----~s~ 571 (954)
|+|+|...+...|.++|..|++..+ ..| |..|++.-|..++.+.+...+.... .|++|.. +++
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~~ 80 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGNCDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDSN 80 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE-HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcchhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccCH
Confidence 9999999999999999999977532 346 9999999999999999988777644 5555544 788
Q ss_pred chhhhHHHHHHHhhccccceeeeecC-----CceEEEeC
Q 002198 572 DDFASYTEFLRYLGSKNRAGVAKFDD-----GTTLFLVP 605 (954)
Q Consensus 572 ~D~~~y~ef~~YL~~K~Ra~v~k~~~-----~~tlflVP 605 (954)
+|...|++|++||.+|+|||||++.+ ...|||||
T Consensus 81 ~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 81 SDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred HHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 99999999999999999999999987 68899998
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.12 E-value=3.9e-10 Score=118.47 Aligned_cols=114 Identities=38% Similarity=0.640 Sum_probs=100.3
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC-
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR- 92 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~- 92 (954)
.++|||+|||.++|+++|.++|..||.|..|. .++++|||||+|.+.++|..|++.+++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999997766 46789999999999999999999999999999999999943
Q ss_pred ---C-----------------------CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC
Q 002198 93 ---P-----------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG 133 (954)
Q Consensus 93 ---p-----------------------~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr 133 (954)
+ ......+++++++..++..++..+|..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 1 1124578999999999999999999999999777666553
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=2.1e-10 Score=114.91 Aligned_cols=75 Identities=33% Similarity=0.573 Sum_probs=70.0
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
.-.++|||+||+..+++.||...|..||.|.+|++ ....|||||+|++..||+.|+..|+|..|+|..|+|++++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 34799999999999999999999999999999995 4467999999999999999999999999999999999875
No 71
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.08 E-value=5.4e-10 Score=93.12 Aligned_cols=55 Identities=36% Similarity=0.714 Sum_probs=51.8
Q ss_pred HHHHHhhcCCEEEEEEeCCC-cEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 236 LHNAMILFGEIERIKSYPSR-NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 236 Lre~Fs~fG~V~~VkI~~sr-G~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
|+++|++||+|+++.+.+.+ ++|||+|.+.++|.+|++.|||..|+|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999999877 99999999999999999999999999999999986
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.06 E-value=4.8e-10 Score=120.47 Aligned_cols=72 Identities=28% Similarity=0.387 Sum_probs=67.1
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhccCCeeEEEec---CCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTY---SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~g---kskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
.++|||+||++.+||++|++||+.||.|.+|.+. ..+|||||+|.+.++|..|| .|+|..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 6899999999999999999999999999999843 35799999999999999999 799999999999999986
No 73
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=5.5e-10 Score=116.97 Aligned_cols=80 Identities=35% Similarity=0.585 Sum_probs=74.0
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
.+-.++++|.|.||+.+++|+||+++|.+||.|..|. ++.+||||||.|.+.++|.+||+.|+|.=+.+--|+|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 3345789999999999999999999999999998776 7889999999999999999999999999999999999
Q ss_pred EecCCC
Q 002198 89 EFARPA 94 (954)
Q Consensus 89 ~~A~p~ 94 (954)
+|++|.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999874
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.04 E-value=6.6e-10 Score=96.13 Aligned_cols=65 Identities=35% Similarity=0.698 Sum_probs=59.9
Q ss_pred EEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 100 LfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
|||+|||+++++++|+++|+.||.|..+.+.++ +++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999988 47899999999999999999999999999885
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.04 E-value=6.2e-10 Score=119.62 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec---CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd---rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
.++|||+||++.+|+++|+++|+.||.|++|.|..+ +|+|||+|++.++|..|+ .|+|..|.|+.|+|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCCC
Confidence 579999999999999999999999999999999987 489999999999999999 599999999999999976543
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.03 E-value=4.2e-10 Score=97.34 Aligned_cols=65 Identities=40% Similarity=0.741 Sum_probs=57.5
Q ss_pred EEEccCCcCCcHHHHHHHHhccCCeeEEEecC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 23 LfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gk-----skG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
|+|+|||.++++++|+++|+.||.|..|.... .+++|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999888433 479999999999999999999988999999875
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=5.2e-10 Score=121.12 Aligned_cols=94 Identities=22% Similarity=0.363 Sum_probs=79.2
Q ss_pred CccCCcceEEEecCC---CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHH
Q 002198 79 SDFRGNPIKIEFARP---AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALK 151 (954)
Q Consensus 79 ~~L~Gr~I~V~~A~p---~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe 151 (954)
....|..|....+.. ....++|+|.|||+...+-||+.+|++||+|.+|.|+-+ ||||||+|++.+||++|-+
T Consensus 75 ~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa 154 (376)
T KOG0125|consen 75 APTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARA 154 (376)
T ss_pred CCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHH
Confidence 334455554443321 234579999999999999999999999999999999876 7899999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCc
Q 002198 152 NINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 152 ~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
+|||..+.||+|.|+.++..-
T Consensus 155 ~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 155 ELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred HhhcceeeceEEEEeccchhh
Confidence 999999999999999988764
No 78
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.02 E-value=3.9e-10 Score=123.71 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=120.7
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhcc-----C--CeeEEE--ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKF-----G--ALDKVT--TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~y-----G--~I~sV~--~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
..-.|.++|||+++|+.|+.+||.+- | .|.-|+ .++-.|-|||.|..+++|..|| ..+...|+.|+|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL-~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFAL-RKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHH-HHHHHHHhHHHHHHH
Confidence 35678999999999999999999732 2 133344 5677899999999999999999 667778888888764
Q ss_pred ecC----------------------------------CCCCCCeEEEeCCCccCCHHHHHhhhccccc-eeE--EEEeec
Q 002198 90 FAR----------------------------------PAKPSKHLWVGGISQTVSKEELEEGFLKFGN-IED--FKFLKD 132 (954)
Q Consensus 90 ~A~----------------------------------p~k~srkLfVgNLP~~vTeedL~elFskfG~-Ie~--I~Ilrd 132 (954)
.++ +.+...||.+++||+.++.++|.++|..|.. |.. |.+..+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 332 2344779999999999999999999999874 332 444443
Q ss_pred -----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 133 -----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 133 -----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
.|.|||+|.+.|+|..|....|++....|.|.|--...+
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 367999999999999999999999888999998655443
No 79
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.01 E-value=3.1e-09 Score=111.63 Aligned_cols=138 Identities=30% Similarity=0.498 Sum_probs=99.0
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.++|||+||++++|+++|.++|..||.|..+.+..++ |+|||+|.+.++|..|++.+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 4999999999999999999999999999999998774 8899999999999999999999999999999999764
Q ss_pred -CcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEE
Q 002198 171 -QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERI 249 (954)
Q Consensus 171 -k~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~V 249 (954)
...+. ..... .. ......................+++.+ ..+++.++...|..+|.+..+
T Consensus 195 ~~~~~~-~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T COG0724 195 ASQPRS-ELSNN---LD--------------ASFAKKLSRGKALLLEKSDNLYVGNLP-LKTAEEELADLFKSRGDIVRA 255 (306)
T ss_pred cccccc-ccccc---cc--------------hhhhccccccccccccccceeeccccc-cccchhHHHHhccccccceee
Confidence 11101 00000 00 000000001111122333444555554 358999999999999999777
Q ss_pred EEeC
Q 002198 250 KSYP 253 (954)
Q Consensus 250 kI~~ 253 (954)
.+..
T Consensus 256 ~~~~ 259 (306)
T COG0724 256 SLPP 259 (306)
T ss_pred eccC
Confidence 7753
No 80
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=5.7e-10 Score=106.62 Aligned_cols=78 Identities=29% Similarity=0.454 Sum_probs=71.7
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
+.+++||||||++.++||.|.++|++.|.|..|.+-.|+ |+|||+|.+.++|+.|++-++++.+..+.|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 468999999999999999999999999999999887664 78999999999999999999999999999999986
Q ss_pred cCCc
Q 002198 169 RSQP 172 (954)
Q Consensus 169 ~sk~ 172 (954)
..-.
T Consensus 114 ~GF~ 117 (153)
T KOG0121|consen 114 AGFV 117 (153)
T ss_pred ccch
Confidence 5543
No 81
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.7e-09 Score=100.03 Aligned_cols=83 Identities=25% Similarity=0.431 Sum_probs=74.8
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEec---CCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY---SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~g---kskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
.+-..+.++.|||+|||+.+|.+++.++|.+||.|..|++| ..+|.|||-|++..+|++|++.|.|..+.++++.|.
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 44456778999999999999999999999999999999954 468999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002198 90 FARPAK 95 (954)
Q Consensus 90 ~A~p~k 95 (954)
+..+.+
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 876543
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=98.97 E-value=1.2e-09 Score=122.75 Aligned_cols=114 Identities=19% Similarity=0.321 Sum_probs=86.5
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe--cCCCcEEEEEeCCH--HHHHHHHHHhcCCccCCcceEEE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT--YSSRSFAFVYFKRV--EDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~--gkskG~AFVeF~s~--edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
++......+|||+||++++|++||+..|..||.|.+|.+ ...||||||+|.+. .++.+||+.|+|..+.|+.|+|.
T Consensus 4 ees~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 4 KSSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 344667799999999999999999999999999998872 33499999999987 78999999999999999999999
Q ss_pred ecCCC--------------CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEE
Q 002198 90 FARPA--------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129 (954)
Q Consensus 90 ~A~p~--------------k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~I 129 (954)
.|++. ....++-+-... .....|+-+|-+.++|..+-+
T Consensus 84 KAKP~YLeRLkrEReea~s~~~~~~kl~k~~--~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 84 KAKEHYLARLKREWEAASSTSDNTIKAPSDS--PPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred eccHHHHHHHHHHHHHhhccccccccccccC--CccceeeEecccccccccccc
Confidence 98751 011222221111 233456667777776665544
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=98.96 E-value=2.4e-09 Score=90.22 Aligned_cols=68 Identities=49% Similarity=0.845 Sum_probs=61.8
Q ss_pred EEEEccCCcCCcHHHHHHHHhccCCeeEEEecC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS----SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 22 tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gk----skG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
+|+|+|||..+++++|+++|..||.|..+.... .+++|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999887444 35999999999999999999999999999988863
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=98.95 E-value=2.8e-09 Score=89.80 Aligned_cols=67 Identities=46% Similarity=0.761 Sum_probs=63.9
Q ss_pred eEEEeCCCccCCHHHHHhhhccccceeEEEEeecC----CeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 99 kLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr----G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
+|+|+|||..+++++|+++|+.||.|..+.+..++ ++|||+|.+.++|.+|++.+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999886 89999999999999999999999999999887
No 85
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.5e-09 Score=103.80 Aligned_cols=76 Identities=30% Similarity=0.503 Sum_probs=69.9
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS------SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gk------skG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
...+|+|||+||..-+||+.|.++|+++|+|..|+++- .=|||||+|-+.++|..|++.++++.|..+.|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 46799999999999999999999999999999998443 348999999999999999999999999999999998
Q ss_pred cC
Q 002198 91 AR 92 (954)
Q Consensus 91 A~ 92 (954)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 63
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=2e-09 Score=124.70 Aligned_cols=152 Identities=22% Similarity=0.428 Sum_probs=123.5
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
....++++|+|||..+++..+++++..||.+.... .+.++||||.+|.+......|++.|||..+.++.+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44568899999999999999999999999876433 578999999999999999999999999999999999987
Q ss_pred cCCCC---------------------------CCCeEEEeCCCccCCH-------------HHHHhhhccccceeEEEEe
Q 002198 91 ARPAK---------------------------PSKHLWVGGISQTVSK-------------EELEEGFLKFGNIEDFKFL 130 (954)
Q Consensus 91 A~p~k---------------------------~srkLfVgNLP~~vTe-------------edL~elFskfG~Ie~I~Il 130 (954)
+-+.. ++..|.+.|+ +|+ |+++..+.+||.|.+|.+.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ip 442 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIP 442 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhcccCceeEEecC
Confidence 64321 1222233332 222 3445567899999999998
Q ss_pred ec---------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 131 KD---------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 131 rd---------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
++ -|..||+|.+.+++++|+++|+|.+|.||.|...|....
T Consensus 443 r~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 443 RPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 87 256999999999999999999999999999999887654
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=98.92 E-value=2.3e-09 Score=120.49 Aligned_cols=77 Identities=21% Similarity=0.459 Sum_probs=71.4
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec--CCeeEEecCCH--HHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRL--EDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd--rG~AFVeF~t~--EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
....+||||||+++++++||+++|..||.|.+|.|++. ||||||+|.+. .++.+||+.|||..+.|+.|+|+.++.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34678999999999999999999999999999999977 68999999987 789999999999999999999998876
Q ss_pred C
Q 002198 171 Q 171 (954)
Q Consensus 171 k 171 (954)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 5
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=3.7e-09 Score=97.79 Aligned_cols=79 Identities=23% Similarity=0.414 Sum_probs=72.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec---CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd---rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
..-++-|||.|||+++|.++..++|.+||.|..|+|-.. +|.|||.|++..||.+|++.|+|..+.++.+.|.+...
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 445788999999999999999999999999999999765 68899999999999999999999999999999998776
Q ss_pred Cc
Q 002198 171 QP 172 (954)
Q Consensus 171 k~ 172 (954)
..
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 54
No 89
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=3.7e-09 Score=114.67 Aligned_cols=82 Identities=29% Similarity=0.459 Sum_probs=73.1
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
..-++|+|.|||+...|-||+..|.+||.|.+|. ...+|||+||+|++.+||++|-++|+|+++.||+|.|..+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3457899999999999999999999999998877 355899999999999999999999999999999999999876
Q ss_pred CCCCCe
Q 002198 94 AKPSKH 99 (954)
Q Consensus 94 ~k~srk 99 (954)
...+++
T Consensus 174 rV~n~K 179 (376)
T KOG0125|consen 174 RVHNKK 179 (376)
T ss_pred hhccCC
Confidence 544443
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-09 Score=112.80 Aligned_cols=79 Identities=34% Similarity=0.605 Sum_probs=74.4
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
....++|||+||..++||.-|+..|-+||.|.+|. ..+.||||||+|...|||.+|+..||...|.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999998 678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 002198 91 ARPAK 95 (954)
Q Consensus 91 A~p~k 95 (954)
++|.+
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 98765
No 91
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=4.1e-09 Score=110.53 Aligned_cols=79 Identities=28% Similarity=0.451 Sum_probs=73.8
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
....+++|-|.||+.++++++|+++|.+||.|..|.+.+| ||||||.|.+.+||.+||+.|||.-+..-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3456788999999999999999999999999999999998 5899999999999999999999999999999999
Q ss_pred EccCC
Q 002198 167 FLRSQ 171 (954)
Q Consensus 167 ~a~sk 171 (954)
|++.+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 98764
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.89 E-value=5.4e-09 Score=110.88 Aligned_cols=74 Identities=26% Similarity=0.303 Sum_probs=67.4
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~---gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
....+|+|+||++.+||++|++||+.||.|.+|.+ ++.+++|||+|+++++|..|+ .|+|..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 34689999999999999999999999999999983 456789999999999999999 999999999999998754
No 93
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.7e-08 Score=116.14 Aligned_cols=156 Identities=24% Similarity=0.230 Sum_probs=113.8
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
..+++-+.++|+|-|||.+|++++|+.+|+.||+|..|+ +...++.+||+|-+..+|++|+++|++..|.|+.|+....
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 444477899999999999999999999999999999988 5667899999999999999999999999999998883211
Q ss_pred C------------------------CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEee-cCCeeEEecCCHHHH
Q 002198 92 R------------------------PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLK-DGNTAFVEYSRLEDA 146 (954)
Q Consensus 92 ~------------------------p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilr-drG~AFVeF~t~EdA 146 (954)
. +....+--.++.|++..+..-++..|.-+|.+.. .... -+..-|++|.+..++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~ 226 (549)
T KOG4660|consen 148 ARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGMLSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSY 226 (549)
T ss_pred ccccchhcccchhhhhccchhhcCCCCCCcCCcceeeeccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccch
Confidence 0 0111122234447777776556666777776554 2221 123578888888888
Q ss_pred HHHHHHhCCceeCCeEEEEEEccC
Q 002198 147 AEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 147 ~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
..+...+ |..+.+....+.+...
T Consensus 227 a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 227 AFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhcccCC-ceecCCCCceEEecCC
Confidence 6666543 6666666666666554
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.85 E-value=1.1e-08 Score=86.67 Aligned_cols=69 Identities=48% Similarity=0.866 Sum_probs=62.8
Q ss_pred EEEEccCCcCCcHHHHHHHHhccCCeeEEEecC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 22 tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gk-----skG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
+|+|+|||..+++++|+++|..+|.|..+.... .+++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999887433 379999999999999999999999999999998864
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.85 E-value=9.3e-09 Score=85.65 Aligned_cols=55 Identities=40% Similarity=0.726 Sum_probs=51.7
Q ss_pred HHhhhccccceeEEEEeecC-CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 114 LEEGFLKFGNIEDFKFLKDG-NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 114 L~elFskfG~Ie~I~Ilrdr-G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
|.++|++||+|.++.+.+++ ++|||+|.+.++|..|++.||+..+.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999999988 99999999999999999999999999999999985
No 96
>smart00360 RRM RNA recognition motif.
Probab=98.82 E-value=1.1e-08 Score=85.74 Aligned_cols=65 Identities=46% Similarity=0.814 Sum_probs=58.6
Q ss_pred EccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 25 VGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 25 V~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
|+|||..+++++|+++|..||.|..+.. ++++++|||+|.+.++|.+|++.+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999988873 3347899999999999999999999999999998873
No 97
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=5.7e-09 Score=109.16 Aligned_cols=73 Identities=25% Similarity=0.410 Sum_probs=63.8
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
-.-++|||+||+.+++.++|+++|++||+|++.. ++++|||+||+|++.+.|.+|++ =-+-.|.||+..|.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchh
Confidence 3568999999999999999999999999998655 68999999999999999999983 3456789998877765
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.81 E-value=1.3e-08 Score=108.12 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC---CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG---NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr---G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
...+|||+||++.+|+++|+++|+.||.|++|.|.+++ ++|||+|++.++|+.|+ .|+|..|.++.|.|......
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCccc
Confidence 45789999999999999999999999999999999884 68999999999999999 89999999999999876544
No 99
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.80 E-value=5.9e-09 Score=106.84 Aligned_cols=76 Identities=37% Similarity=0.588 Sum_probs=71.0
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
-+...+|.|-||.+-+|.++|+.+|.+||.|-+|. +..++|||||.|....||+.|++.|+|.+|.|+.|+|.+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45688999999999999999999999999999987 456899999999999999999999999999999999998
Q ss_pred cC
Q 002198 91 AR 92 (954)
Q Consensus 91 A~ 92 (954)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 75
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.80 E-value=2.2e-08 Score=84.80 Aligned_cols=69 Identities=43% Similarity=0.821 Sum_probs=64.7
Q ss_pred eEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 99 kLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
+|+|+|||..+++++|+++|+.+|.|..+.+..+ +++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999986 47899999999999999999999999999998864
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=1.3e-09 Score=109.60 Aligned_cols=86 Identities=26% Similarity=0.473 Sum_probs=79.7
Q ss_pred EEEecCCCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCC
Q 002198 87 KIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGG 160 (954)
Q Consensus 87 ~V~~A~p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~G 160 (954)
.++|+..-+.+..|||||||+++||.||...|++||.|++|.+++| +||||+.|++......|+..|||..|.|
T Consensus 25 ~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 25 KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc
Confidence 6788888889999999999999999999999999999999999998 5899999999999999999999999999
Q ss_pred eEEEEEEccCCc
Q 002198 161 EQLRVDFLRSQP 172 (954)
Q Consensus 161 r~I~V~~a~sk~ 172 (954)
|.|+|.......
T Consensus 105 RtirVDHv~~Yk 116 (219)
T KOG0126|consen 105 RTIRVDHVSNYK 116 (219)
T ss_pred eeEEeeeccccc
Confidence 999997655443
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=8.9e-08 Score=109.62 Aligned_cols=140 Identities=21% Similarity=0.358 Sum_probs=108.5
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE--------ecCCCc---EEEEEeCCHHHHHHHHHHhcC---
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT--------TYSSRS---FAFVYFKRVEDAKAAKDALQG--- 78 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~--------~gkskG---~AFVeF~s~edA~~AL~~Lng--- 78 (954)
......=+++|||++||.+++|+.|...|..||.+.-=+ .-..+| |+|+.|+++....+-+..+.-
T Consensus 252 ~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~ 331 (520)
T KOG0129|consen 252 GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEG 331 (520)
T ss_pred CCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhccc
Confidence 344466789999999999999999999999999865222 112355 999999999988887765432
Q ss_pred -Cc-------cCCcceEEEec------------CCCCCCCeEEEeCCCccCCHHHHHhhhc-cccceeEEEEeec-----
Q 002198 79 -SD-------FRGNPIKIEFA------------RPAKPSKHLWVGGISQTVSKEELEEGFL-KFGNIEDFKFLKD----- 132 (954)
Q Consensus 79 -~~-------L~Gr~I~V~~A------------~p~k~srkLfVgNLP~~vTeedL~elFs-kfG~Ie~I~Ilrd----- 132 (954)
.. ++.+.|.|... .+-.+.++||||+||.-++.+||..+|+ -||.|.-+-|-.|
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 11 22333444221 1345688999999999999999999999 8999998877766
Q ss_pred -CCeeEEecCCHHHHHHHHHH
Q 002198 133 -GNTAFVEYSRLEDAAEALKN 152 (954)
Q Consensus 133 -rG~AFVeF~t~EdA~~AIe~ 152 (954)
+|.|-|+|.+..+..+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 68899999999999999965
No 103
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.76 E-value=1.9e-07 Score=110.56 Aligned_cols=78 Identities=26% Similarity=0.592 Sum_probs=74.6
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccc
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~ 174 (954)
+++||||+|+..+++.||.++|+.||.|++|.++..+++|||.+....||.+|+.+|++..+.++.|+|.|+..+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 679999999999999999999999999999999999999999999999999999999999999999999999887643
No 104
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.74 E-value=8.8e-09 Score=105.58 Aligned_cols=76 Identities=29% Similarity=0.476 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
....|.|-||.+-++.++|+.+|++||.|-+|.|..| +|||||.|....||+.|+++|+|..++|+.|.|++++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4568999999999999999999999999999999988 5899999999999999999999999999999999876
Q ss_pred CC
Q 002198 170 SQ 171 (954)
Q Consensus 170 sk 171 (954)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 53
No 105
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=3.3e-08 Score=106.31 Aligned_cols=75 Identities=28% Similarity=0.543 Sum_probs=70.5
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..+-+||||.-|+++++|++|+..|..||.|..|. +++++|||||+|+++.+...|.+..+|.+|.|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46789999999999999999999999999998776 789999999999999999999999999999999999986
Q ss_pred c
Q 002198 91 A 91 (954)
Q Consensus 91 A 91 (954)
-
T Consensus 178 E 178 (335)
T KOG0113|consen 178 E 178 (335)
T ss_pred c
Confidence 4
No 106
>smart00360 RRM RNA recognition motif.
Probab=98.72 E-value=3e-08 Score=83.12 Aligned_cols=65 Identities=43% Similarity=0.758 Sum_probs=60.3
Q ss_pred EeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 102 VGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 102 VgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
|+|||..+++++|+++|+.||.|..+.+..++ ++|||+|.+.++|..|++.+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999998874 599999999999999999999999999998873
No 107
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=1.5e-09 Score=109.31 Aligned_cols=74 Identities=24% Similarity=0.501 Sum_probs=70.3
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
-..+--|||+|||+++||.||.-+|++||+|++|. +|+++||||+.|++.....-|+..+||..|.||.|+|.-
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 56788999999999999999999999999999887 799999999999999999999999999999999999974
No 108
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.71 E-value=1.2e-06 Score=102.52 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=124.3
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSS-RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gks-kG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
.+.|.+-+++++++..+.|+++||...- |..+. ...+ .|-++|+|....++.+|+ +.+...+.+|.|.|...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhhhhcceeecCC
Confidence 6789999999999999999999999763 43332 3333 789999999999999999 77888899999988544
Q ss_pred C------------------------------------------CCCCCCeEEEeCCCccCCHHHHHhhhccccceeE-EE
Q 002198 92 R------------------------------------------PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED-FK 128 (954)
Q Consensus 92 ~------------------------------------------p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~-I~ 128 (954)
. |.....+|||..||..+++.++.++|.....|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 2 1223569999999999999999999999998888 44
Q ss_pred Eeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 129 FLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 129 Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
|.+. ++.|||+|..++++.+|...-++..++.+.|+|.-...+
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 4432 467999999999999999888888889999999654443
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=9.4e-09 Score=123.06 Aligned_cols=160 Identities=23% Similarity=0.426 Sum_probs=143.6
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
...+...+++||++||+..+++.+|+-.|..+|.|.+|. ++...-||||.|.+...+-.|.-++.+..|....++
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 445577899999999999999999999999999998887 344567999999999999999999999999888888
Q ss_pred EEecCC-CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCC--eEEE
Q 002198 88 IEFARP-AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLR 164 (954)
Q Consensus 88 V~~A~p-~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~G--r~I~ 164 (954)
+.+..+ ...+..+|+++|..-+....|...|..||.|..|.+-...-||||.|++...|..|++.|.|..|++ +.++
T Consensus 445 ~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 445 IGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 888763 4567899999999999999999999999999999998878899999999999999999999999986 7899
Q ss_pred EEEccCCc
Q 002198 165 VDFLRSQP 172 (954)
Q Consensus 165 V~~a~sk~ 172 (954)
|.|+....
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99987654
No 110
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=1.7e-08 Score=105.78 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
.-.+||||||+|.+.+++|++.|++||+|++..++.| ||+|||+|++.++|.+|++.- +-.|+||+..++++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 3468999999999999999999999999999999987 589999999999999999653 357999999998887
Q ss_pred CCc
Q 002198 170 SQP 172 (954)
Q Consensus 170 sk~ 172 (954)
.-.
T Consensus 90 lg~ 92 (247)
T KOG0149|consen 90 LGG 92 (247)
T ss_pred hcC
Confidence 643
No 111
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1e-08 Score=105.81 Aligned_cols=80 Identities=33% Similarity=0.628 Sum_probs=74.4
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++||||+|..++++.-|...|-.||.|.+|.+..| ||+|||+|+-.|||..||..||+..+.||.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 346789999999999999999999999999999999866 79999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
++..+.
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 987653
No 112
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.70 E-value=1.8e-08 Score=116.29 Aligned_cols=76 Identities=29% Similarity=0.535 Sum_probs=72.7
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
+.|||||||+++++++|.++|+..|.|.++++..| +|+||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999988 589999999999999999999999999999999999877
Q ss_pred cc
Q 002198 172 PS 173 (954)
Q Consensus 172 ~~ 173 (954)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 65
No 113
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=3.9e-08 Score=105.74 Aligned_cols=77 Identities=31% Similarity=0.571 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
.+-++|||+-|+++++|.+|+..|+.||.|+.|.++++ +|||||+|+.+.+...|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999988 699999999999999999999999999999999876
Q ss_pred cCC
Q 002198 169 RSQ 171 (954)
Q Consensus 169 ~sk 171 (954)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 554
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.68 E-value=3.5e-08 Score=116.66 Aligned_cols=73 Identities=33% Similarity=0.585 Sum_probs=71.4
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
++||||++|+.+++|.||.++|..||+|.+|+...+++||||++.+..+|.+|+.+|++..+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 8999999999999999999999999999999988899999999999999999999999999999999999985
No 115
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=4.1e-08 Score=94.77 Aligned_cols=73 Identities=22% Similarity=0.535 Sum_probs=68.7
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
+.-.|||.|+...+||++|.+.|..||+|..|. ++-.||||+|+|.+.++|.+|++.+|+..|.|..|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456799999999999999999999999999887 5668999999999999999999999999999999999997
No 116
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.63 E-value=7.9e-08 Score=111.03 Aligned_cols=72 Identities=26% Similarity=0.541 Sum_probs=69.7
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
+.|||+|||++++|++|.++|++.|.|.+++ +++.+||||++|.+.++|..|++.|++..+.|++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 9999999999999999999999999999887 78899999999999999999999999999999999999985
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=98.62 E-value=1.1e-07 Score=83.28 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=49.1
Q ss_pred HHHHHHHHh----hcCCEEEEE-E-e-------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEE
Q 002198 233 EQMLHNAMI----LFGEIERIK-S-Y-------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIM 288 (954)
Q Consensus 233 EedLre~Fs----~fG~V~~Vk-I-~-------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs 288 (954)
+++|+++|+ .||.|.+|. + . .++|+|||+|.+.++|.+|++.|||+.+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 577888888 999999885 3 2 248999999999999999999999999999999863
No 118
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=7.7e-08 Score=92.93 Aligned_cols=77 Identities=25% Similarity=0.519 Sum_probs=70.8
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.--|||.++...+|+++|.+.|..||+|..|.+..| +|||+|+|++.++|++|+..+||..+.|..|.|.|+=.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 457999999999999999999999999999999877 57899999999999999999999999999999998766
Q ss_pred Ccc
Q 002198 171 QPS 173 (954)
Q Consensus 171 k~~ 173 (954)
+..
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 543
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.54 E-value=6.4e-07 Score=104.79 Aligned_cols=191 Identities=13% Similarity=-0.023 Sum_probs=114.7
Q ss_pred eEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 99 kLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
.+-+.+.+++.++.|++++|.-. .|..+.|.++ .|.++|+|....++.+|+. -|...+-.|.+.|..+....
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred eeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCccc
Confidence 46678889999999999998633 2333344433 4679999999999999984 45566677888886655543
Q ss_pred ccccCCCCCCCCCCCCccCCCCCCCCCccccc-cCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEE-EE
Q 002198 173 SRREQWPNSHDARDGPIIGRGTGFSDNHSAYK-RSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIER-IK 250 (954)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~-~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~-Vk 250 (954)
......... .......+..-+......... +......- ......+|++--++ +.+++.++-++|.+--.|++ |.
T Consensus 391 ~~~a~~~~~--~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~-P~~ag~~lyv~~lP-~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 391 RNGAPPFQA--GVPPPVIQNNHGRPIAPPRAMVRPGQNVPF-PGGAGGALYVFQLP-VMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred cccCccccc--cCCCCcccccCCCCCCCcccccCCCCCCCC-CCCccceEEeccCC-ccccccchhhhhhhhhhhhheeE
Confidence 322111100 000000111111111000000 11111111 22234455554444 45788889999987777776 66
Q ss_pred EeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCC
Q 002198 251 SYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 295 (954)
Q Consensus 251 I~~-----srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~ 295 (954)
|-+ -++.|||+|.+++++.+|...-+...++-+.|+|.-+..+.+
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 632 368999999999999999776666666778899977766655
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=1.6e-08 Score=120.74 Aligned_cols=216 Identities=17% Similarity=0.200 Sum_probs=169.2
Q ss_pred CCCEEEEccCCcCCcHH-HHHHHHhccCCeeEEEecC------CCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 19 PSSNLWVGNLSADTTDA-DLKELFGKFGALDKVTTYS------SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~-dL~e~Fs~yG~I~sV~~gk------skG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
......+.++-+...+. ..+..|..+|.|+.|...+ .-.++++.+.....++.|. ...+.-+.++.+.+..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCC
Confidence 44566777887776655 7889999999999998332 1237889999999999888 67777888888888777
Q ss_pred CCCC-------------CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEe--e----cCCeeEEecCCHHHHHHHHHH
Q 002198 92 RPAK-------------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL--K----DGNTAFVEYSRLEDAAEALKN 152 (954)
Q Consensus 92 ~p~k-------------~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Il--r----drG~AFVeF~t~EdA~~AIe~ 152 (954)
.+.. ...++||.||+..+.+.+|...|..+|.++.+.+. . -+|.|||+|...+++.+|+..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 5422 23579999999999999999999999987766554 1 168999999999999999954
Q ss_pred hCCceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCC
Q 002198 153 INGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMD 232 (954)
Q Consensus 153 Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vt 232 (954)
..+..++ +..+++.+++ +..|
T Consensus 729 ~d~~~~g----------------------------------------------------------K~~v~i~g~p-f~gt 749 (881)
T KOG0128|consen 729 RDSCFFG----------------------------------------------------------KISVAISGPP-FQGT 749 (881)
T ss_pred hhhhhhh----------------------------------------------------------hhhhheeCCC-CCCc
Confidence 3322211 2234555555 6799
Q ss_pred HHHHHHHHhhcCCEEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 233 EQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 233 EedLre~Fs~fG~V~~VkI~-----~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
+++|+.+++++|.+++..+. +.+|.|+|.|.++.+|.+++...++..++-+.+.|..++++.
T Consensus 750 ~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 750 KEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred hHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 99999999999999988764 457999999999999999999998888888888887766643
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=3.8e-07 Score=100.09 Aligned_cols=80 Identities=24% Similarity=0.473 Sum_probs=72.0
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHh-cCCccCCcceEEEecC
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDAL-QGSDFRGNPIKIEFAR 92 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~L-ng~~L~Gr~I~V~~A~ 92 (954)
.-++....+|||+||-..++|.||+++|-+||+|.+|..-..+++|||+|.+.+.|+.|.+++ +..+|.|++|.|.|..
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 334567899999999999999999999999999999998788899999999999999999765 5567899999999998
Q ss_pred C
Q 002198 93 P 93 (954)
Q Consensus 93 p 93 (954)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 6
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=98.37 E-value=8.1e-07 Score=77.70 Aligned_cols=55 Identities=33% Similarity=0.545 Sum_probs=49.6
Q ss_pred HHHHHHHHh----ccCCeeEEE-------e--cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 34 DADLKELFG----KFGALDKVT-------T--YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 34 E~dL~e~Fs----~yG~I~sV~-------~--gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
+++|+++|+ .||.|.+|. . +.++|||||+|.+.++|.+|++.|+|..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999998773 2 667999999999999999999999999999999876
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=4.4e-08 Score=117.18 Aligned_cols=139 Identities=24% Similarity=0.267 Sum_probs=118.0
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
+..+++||+||++.+.+.||...|..+|.+..|. .++-+|+|||.|...++|.+|+...+++.++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 5678899999999999999999999999876554 5678999999999999999999655554444
Q ss_pred CCCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 92 RPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 92 ~p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
...|+|.|.|+..|+++++.++.++|.+.+..+... +|.|||.|.++.++.+++.......+..+.+.|.
T Consensus 736 -----K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~ 810 (881)
T KOG0128|consen 736 -----KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQ 810 (881)
T ss_pred -----hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccc
Confidence 467899999999999999999999999999877654 5789999999999999998777777777777776
Q ss_pred EccC
Q 002198 167 FLRS 170 (954)
Q Consensus 167 ~a~s 170 (954)
....
T Consensus 811 vsnp 814 (881)
T KOG0128|consen 811 VSNP 814 (881)
T ss_pred ccCC
Confidence 6444
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.31 E-value=1e-06 Score=96.72 Aligned_cols=78 Identities=26% Similarity=0.530 Sum_probs=71.7
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHH-hCCceeCCeEEEEEEccC
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKN-INGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~-Lng~~i~Gr~I~V~~a~s 170 (954)
.+....+|||++|-..+++.+|++.|.+||.|+.|.+...+++|||+|.+.++|+.|.++ ++...|.|+.|+|.|...
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 455678999999999999999999999999999999999999999999999999999966 455688999999999887
No 125
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.28 E-value=2.7e-07 Score=95.69 Aligned_cols=129 Identities=29% Similarity=0.396 Sum_probs=107.3
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
.+..++|||.||-..++|+-|.++|...|.|..|.+ .+-| ||||.|+++-...-|++.+||..+.++.+.|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 567789999999999999999999999999999883 2334 9999999999999999999999999998888753
Q ss_pred CCCCCCCeEEEeC----CCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCc
Q 002198 92 RPAKPSKHLWVGG----ISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGR 156 (954)
Q Consensus 92 ~p~k~srkLfVgN----LP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~ 156 (954)
.|+ |...++++.+.+.|+..|.|+.+++..+ ++++|+.+-..-..-.++....+.
T Consensus 85 ----------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 85 ----------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ----------cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 344 6667899999999999999999988765 457888887766666666544433
No 126
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=8.1e-07 Score=102.68 Aligned_cols=176 Identities=22% Similarity=0.260 Sum_probs=115.4
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~ 173 (954)
...++|+|-|||.+|++++|.++|+.||+|..|..-+. ++.+||+|-+..+|+.|+++|++..|.|+.|+ .....
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~ 148 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGA 148 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcc
Confidence 35789999999999999999999999999999876655 57899999999999999999999999999988 22221
Q ss_pred cccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC
Q 002198 174 RREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP 253 (954)
Q Consensus 174 ~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~ 253 (954)
++....... .. .......+..........-.. +++-+.|. .+...++..+..+|.+..-+...
T Consensus 149 ~~~~~~~~~----~~----------~~~~~~~p~a~s~pgg~~~~~-~~g~l~P~--~s~~~~~~~~~~~~~~~~~~~~~ 211 (549)
T KOG4660|consen 149 RRAMGLQSG----TS----------FLNHFGSPLANSPPGGWPRGQ-LFGMLSPT--RSSILLEHISSVDGSSPGRETPL 211 (549)
T ss_pred cccchhccc----ch----------hhhhccchhhcCCCCCCcCCc-ceeeeccc--hhhhhhhcchhccCccccccccc
Confidence 121111100 00 000000001111111111122 22225554 45566777778888887722233
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 254 SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 254 srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
-+..-|++|.+..++..+...+ |..+.+....+.++..
T Consensus 212 ~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 212 LNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 3457788888888886665543 7777788877888765
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.7e-05 Score=91.30 Aligned_cols=157 Identities=16% Similarity=0.214 Sum_probs=105.2
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEE--------eecCC---eeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF--------LKDGN---TAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~I--------lrdrG---~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
-+++||||+||++++|++|...|..||.+.-=+- ...+| |+|+-|+++.....-+.++.- +...+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 3689999999999999999999999996542221 12256 999999999998888866543 434444
Q ss_pred EEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHh-hc
Q 002198 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMI-LF 243 (954)
Q Consensus 165 V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs-~f 243 (954)
+.......+.+........-.+ ............+++++|||-++. -++-++|..+|+ .|
T Consensus 335 f~vss~~~k~k~VQIrPW~laD------------------s~fv~d~sq~lDprrTVFVGgvpr-pl~A~eLA~imd~ly 395 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLAD------------------SDFVLDHNQPIDPRRTVFVGGLPR-PLTAEELAMIMEDLF 395 (520)
T ss_pred EEEecCcccccceeEEeeEecc------------------chhhhccCcccCccceEEecCCCC-cchHHHHHHHHHHhc
Confidence 4332222111100000000000 000011223556788888888775 489999999999 99
Q ss_pred CCEEEEEEeCC------CcEEEEEeCCHHHHHHHHHH
Q 002198 244 GEIERIKSYPS------RNYSFVEFRSVDEARRAKEG 274 (954)
Q Consensus 244 G~V~~VkI~~s------rG~AFVeF~s~EdA~kAie~ 274 (954)
|.|..+-|-.+ +|-|=|+|.+...-.+||++
T Consensus 396 GgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 396 GGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99998887533 78999999999999999874
No 128
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.17 E-value=2.4e-06 Score=94.57 Aligned_cols=167 Identities=17% Similarity=0.256 Sum_probs=126.7
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEee------cCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLK------DGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilr------drG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
...++|++++.+.+.+.++..++..+|.+....+.. .++++++.|+..+.+..|+.......+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 578899999999999999999999999766665543 26889999999999999996544456666666555444
Q ss_pred CCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEE
Q 002198 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERI 249 (954)
Q Consensus 170 sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~V 249 (954)
....+.. .............++++++++ +.+++++|+++|..+|.|..+
T Consensus 167 ~~~~~~~------------------------------n~~~~~~~~~s~~~~~~~~~~-f~~~~d~~~~~~~~~~~i~~~ 215 (285)
T KOG4210|consen 167 RRGLRPK------------------------------NKLSRLSSGPSDTIFFVGELD-FSLTRDDLKEHFVSSGEITSV 215 (285)
T ss_pred ccccccc------------------------------chhcccccCccccceeecccc-cccchHHHhhhccCcCcceee
Confidence 3321000 001111133445677677776 689999999999999999999
Q ss_pred EEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 250 KSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 250 kI~------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
++. ..+|+|+|+|.+...+.+|+.. +...+.++.+.|.+.....
T Consensus 216 r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 216 RLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred ccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 986 3478999999999999999877 8889999999998885554
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.17 E-value=1.2e-06 Score=105.47 Aligned_cols=156 Identities=19% Similarity=0.309 Sum_probs=125.2
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
+++||+|||...+++.+|+..|..+|.|++|.|... .-++||.|.+...+-.|...+.+..|....+++.+...
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~- 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP- 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc-
Confidence 678999999999999999999999999999998765 24699999999999999888877766554444432211
Q ss_pred cccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEE
Q 002198 172 PSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKS 251 (954)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI 251 (954)
...+++-+|++-+..+ +....|...|..||.|..|.+
T Consensus 451 ------------------------------------------kst~ttr~~sgglg~w-~p~~~l~r~fd~fGpir~Idy 487 (975)
T KOG0112|consen 451 ------------------------------------------KSTPTTRLQSGGLGPW-SPVSRLNREFDRFGPIRIIDY 487 (975)
T ss_pred ------------------------------------------ccccceeeccCCCCCC-ChHHHHHHHhhccCcceeeec
Confidence 1122333444444333 777889999999999999999
Q ss_pred eCCCcEEEEEeCCHHHHHHHHHHhCCCeeCC--ceEEEEEecCCCCC
Q 002198 252 YPSRNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELAP 296 (954)
Q Consensus 252 ~~srG~AFVeF~s~EdA~kAie~LNG~~f~G--r~I~Vs~Ak~e~~~ 296 (954)
-..--||+|.|.+...|..|++.|-|..|+| ++++|.|+......
T Consensus 488 ~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 488 RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 8778899999999999999999999999986 78999999776554
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.15 E-value=2.7e-06 Score=97.57 Aligned_cols=75 Identities=31% Similarity=0.549 Sum_probs=67.9
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
.-.++|||.||...+...||+.+|++||+|+..+ ..-.++|+||+|.+.++|.+||+.|+.+.|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3478999999999999999999999999998544 3446899999999999999999999999999999999988
Q ss_pred C
Q 002198 92 R 92 (954)
Q Consensus 92 ~ 92 (954)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 6
No 131
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.3e-06 Score=92.70 Aligned_cols=80 Identities=26% Similarity=0.465 Sum_probs=74.0
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCC------eeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN------TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG------~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
..+.+.|||..|.+-+|.+||.-+|+.||+|.+|.+++|+. +|||+|++.++.++|.-+|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 56789999999999999999999999999999999999963 699999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
+.+-..
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 876543
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.9e-06 Score=93.07 Aligned_cols=79 Identities=28% Similarity=0.458 Sum_probs=72.5
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
....++.+.|||..|.+-+|++||.-+|+.||.|.++. ++.+-.||||+|.+.+++++|.-+|++..|..+.|.
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34467899999999999999999999999999998765 677889999999999999999999999999999999
Q ss_pred EEecC
Q 002198 88 IEFAR 92 (954)
Q Consensus 88 V~~A~ 92 (954)
|.|+.
T Consensus 313 VDFSQ 317 (479)
T KOG0415|consen 313 VDFSQ 317 (479)
T ss_pred eehhh
Confidence 99875
No 133
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.09 E-value=3.2e-06 Score=93.51 Aligned_cols=154 Identities=24% Similarity=0.372 Sum_probs=123.8
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
...+++|++++..++.+.++..++..+|.+.... ...+++++++.|+..+.+..||.......+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4689999999999999999999999999665443 4668999999999999999999554444555544433332
Q ss_pred C-------------CCCCCCeEE-EeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHH
Q 002198 92 R-------------PAKPSKHLW-VGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALK 151 (954)
Q Consensus 92 ~-------------p~k~srkLf-VgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe 151 (954)
+ ......+++ |++|++++++++|+..|..+|.|..+++..+ +++|||.|....++..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 2 122345666 9999999999999999999999999998866 4789999999999999997
Q ss_pred HhCCceeCCeEEEEEEccCCc
Q 002198 152 NINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 152 ~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
. ....+.++.+.+.+.....
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 7 7788999999998766553
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.05 E-value=5.3e-06 Score=95.22 Aligned_cols=75 Identities=23% Similarity=0.495 Sum_probs=69.5
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.++|||.+|+..+...+|+++|++||+|+..+++.+ +-|+||++.+.++|.++|+.||.+.|+|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 468999999999999999999999999999999876 45799999999999999999999999999999988775
Q ss_pred C
Q 002198 171 Q 171 (954)
Q Consensus 171 k 171 (954)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 4
No 135
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.02 E-value=1.5e-05 Score=82.63 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=70.0
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhcc-CCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKF-GALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~y-G~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
.+......++|..||.-+.|.++..+|.++ |.|..++ +|.+||||||+|.+++.|+-|.+.||+..|.++.+.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345567789999999999999999999999 5555544 788999999999999999999999999999999999
Q ss_pred EEecCCC
Q 002198 88 IEFARPA 94 (954)
Q Consensus 88 V~~A~p~ 94 (954)
|.+-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987554
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.98 E-value=1.6e-06 Score=90.03 Aligned_cols=135 Identities=20% Similarity=0.228 Sum_probs=104.6
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC----CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr----G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
....++|||+|+...++++-|.++|-+.|+|.+|.|..++ .||||.|+++-....|++.+||..+.++.|.|++-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4567899999999999999999999999999999998774 379999999999999999999999999999887633
Q ss_pred CCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEE
Q 002198 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERI 249 (954)
Q Consensus 170 sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~V 249 (954)
...... ++ ..++++.+.+.|+.-|.++.+
T Consensus 86 G~shap--------------------------------------------------ld-~r~~~ei~~~v~s~a~p~~~~ 114 (267)
T KOG4454|consen 86 GNSHAP--------------------------------------------------LD-ERVTEEILYEVFSQAGPIEGV 114 (267)
T ss_pred CCCcch--------------------------------------------------hh-hhcchhhheeeecccCCCCCc
Confidence 221000 01 246788888889988888888
Q ss_pred EEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCe
Q 002198 250 KSY-----PSRNYSFVEFRSVDEARRAKEGLQGRL 279 (954)
Q Consensus 250 kI~-----~srG~AFVeF~s~EdA~kAie~LNG~~ 279 (954)
++. +.+.++|+.+...-..-.|.....+..
T Consensus 115 R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 115 RIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred cccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 774 246788888765555555555444443
No 137
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.95 E-value=2.1e-05 Score=81.46 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCCCCCHHHHHHHHhhc-CCEEEEEE------eCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 218 SKILWVGYPPSVQMDEQMLHNAMILF-GEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 218 s~Vlvvgn~ps~~vtEedLre~Fs~f-G~V~~VkI------~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
..+++++-++ +-..|.++...|.+| |.|.++++ ++++|||||+|++.+.|+.|.+.||+..|.|+.|.|.+.
T Consensus 49 ~g~~~~~~~p-~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIP-HGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccc-cchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 3445555444 347888899999988 67888887 367999999999999999999999999999999999999
Q ss_pred cCC
Q 002198 291 SSE 293 (954)
Q Consensus 291 k~e 293 (954)
.++
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 666
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.89 E-value=5e-05 Score=87.74 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=56.9
Q ss_pred EEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC----C--CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 221 LWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP----S--RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 221 lvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~----s--rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
+++.++| +++++.+|+++|..||.|+...|.. . .+||||+|.+.+++..|+++ +-..++|+++.|+-.+..
T Consensus 291 i~V~nlP-~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 291 IFVKNLP-PDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred eEeecCC-CCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4444444 4599999999999999999877742 2 28999999999999999986 477788999999766443
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.86 E-value=4.2e-05 Score=82.40 Aligned_cols=87 Identities=39% Similarity=0.508 Sum_probs=73.8
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
.+....+|+|.|||+.|+++||+++|..||.+..+. .+.+.|.|-|.|...+||.+|++.+++..+.|+.|.|..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344568899999999999999999999999877665 577889999999999999999999999999999999987
Q ss_pred cCCCCCCCeEEE
Q 002198 91 ARPAKPSKHLWV 102 (954)
Q Consensus 91 A~p~k~srkLfV 102 (954)
.........+-|
T Consensus 159 i~~~~~~~r~~~ 170 (243)
T KOG0533|consen 159 ISSPSQSKRLPV 170 (243)
T ss_pred ecCccccccccc
Confidence 754444444333
No 140
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.83 E-value=2.6e-05 Score=92.05 Aligned_cols=82 Identities=32% Similarity=0.482 Sum_probs=74.3
Q ss_pred CCCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE---------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Q 002198 12 YDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT---------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82 (954)
Q Consensus 12 ~~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~---------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~ 82 (954)
.-+..++-+++|||+||++.++|+.|...|..||.|.+|+ ..+.+.++||-|-+..||++|++.|+|..+.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 3445578899999999999999999999999999999887 3456889999999999999999999999999
Q ss_pred CcceEEEecCC
Q 002198 83 GNPIKIEFARP 93 (954)
Q Consensus 83 Gr~I~V~~A~p 93 (954)
+..+++.|+++
T Consensus 246 ~~e~K~gWgk~ 256 (877)
T KOG0151|consen 246 EYEMKLGWGKA 256 (877)
T ss_pred eeeeeeccccc
Confidence 99999999964
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.80 E-value=2.3e-05 Score=83.32 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=107.8
Q ss_pred CCCeEEEeCCCccCCHHH-H--HhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 96 PSKHLWVGGISQTVSKEE-L--EEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeed-L--~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
.....+++++-.++..+- | ...|+.|-......+.++ ++++|+.|+....-.++-..-++++++-..|++.-
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 344566666655555444 2 566777766666666665 46799999877777776655566666666654432
Q ss_pred ccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEE
Q 002198 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 247 (954)
Q Consensus 168 a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~ 247 (954)
.++-.... ..+-+....+|++..+..+ ++++.|-..|.+|-...
T Consensus 175 gtswedPs----------------------------------l~ew~~~DfRIfcgdlgNe--vnd~vl~raf~Kfpsf~ 218 (290)
T KOG0226|consen 175 GTSWEDPS----------------------------------LAEWDEDDFRIFCGDLGNE--VNDDVLARAFKKFPSFQ 218 (290)
T ss_pred ccccCCcc----------------------------------cccCccccceeeccccccc--ccHHHHHHHHHhccchh
Confidence 22211100 0001222345555555544 89999999999997555
Q ss_pred EEEE------eCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 248 RIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 248 ~VkI------~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
..++ .+++||+||.|.+.+++.+|+..|||+.++.+.|.++-+.-
T Consensus 219 ~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 219 KAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred hccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 4444 46789999999999999999999999999999998865533
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.74 E-value=0.00011 Score=85.06 Aligned_cols=73 Identities=26% Similarity=0.401 Sum_probs=63.2
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
..|||+|||.+++.++|+++|..||.|+...|.... .||||+|++.+++..||++ +...++++++.|+..+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 459999999999999999999999999988776532 6799999999999999966 477899999999865543
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.73 E-value=5.7e-06 Score=92.50 Aligned_cols=152 Identities=24% Similarity=0.427 Sum_probs=125.1
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCc-cCCcceEEEecCCCC-CCC
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-FRGNPIKIEFARPAK-PSK 98 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~-L~Gr~I~V~~A~p~k-~sr 98 (954)
+.+|++||.+.++.+||..+|...-.-.+-..-...|||||...+...|.+|++.+++.. +.|+++.+..+-+.+ .++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsr 81 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSR 81 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhh
Confidence 579999999999999999999865110111122346899999999999999999998865 889999999876544 478
Q ss_pred eEEEeCCCccCCHHHHHhhhccccceeEEEEeec-CCe--eEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNT--AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 99 kLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-rG~--AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
++-|.|+|....++-|..+...||.++.|....- ... .-|+|...+.+..||..+++..+.+..++|.|.-.+.
T Consensus 82 k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 8999999999999999999999999998876432 222 5578899999999999999999999999998876554
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.72 E-value=0.00013 Score=68.26 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=59.2
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhcc--CCeeEE------EecCCCcEEEEEeCCHHHHHHHHHHhcCCccC----CcceE
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKF--GALDKV------TTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR----GNPIK 87 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~y--G~I~sV------~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~----Gr~I~ 87 (954)
.+||+|+|||...|.++|.+++... |..+-+ ....+.|||||.|.+.+.|.+..+..+|..+. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3799999999999999999888854 333322 26778999999999999999999999998874 45667
Q ss_pred EEecC
Q 002198 88 IEFAR 92 (954)
Q Consensus 88 V~~A~ 92 (954)
|.||+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 77764
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.71 E-value=7.2e-06 Score=91.70 Aligned_cols=154 Identities=20% Similarity=0.353 Sum_probs=121.0
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCc-eeCCeEEEEEEccCCccccc
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR-QIGGEQLRVDFLRSQPSRRE 176 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~-~i~Gr~I~V~~a~sk~~~~~ 176 (954)
+++|++||.+.++..+|+.+|.....-..-.++...|++||.+.+..-|.+|++.++|+ .+.|..+.|...-.++.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs- 80 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS- 80 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh-
Confidence 57999999999999999999986632223334555789999999999999999999997 6889999998765544221
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCC--
Q 002198 177 QWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-- 254 (954)
Q Consensus 177 ~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~s-- 254 (954)
+++-+.++++. ..|+.|..++..||.|+.+.....
T Consensus 81 -----------------------------------------rk~Qirnippq--l~wevld~Ll~qyg~ve~~eqvnt~~ 117 (584)
T KOG2193|consen 81 -----------------------------------------RKIQIRNIPPQ--LQWEVLDSLLAQYGTVENCEQVNTDS 117 (584)
T ss_pred -----------------------------------------hhhhHhcCCHH--HHHHHHHHHHhccCCHhHhhhhccch
Confidence 12333445553 789999999999999998876432
Q ss_pred -CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCC
Q 002198 255 -RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 295 (954)
Q Consensus 255 -rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~ 295 (954)
.-..-|+|.+.+.+.-|+..|+|..+....+++.|.-.+..
T Consensus 118 etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 118 ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 23455789999999999999999999999999999855543
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.71 E-value=4e-05 Score=81.54 Aligned_cols=147 Identities=20% Similarity=0.368 Sum_probs=106.9
Q ss_pred EEEccCCcCCcHHH-H--HHHHhccCCeeEE-----EecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC--
Q 002198 23 LWVGNLSADTTDAD-L--KELFGKFGALDKV-----TTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR-- 92 (954)
Q Consensus 23 LfV~NLP~svTE~d-L--~e~Fs~yG~I~sV-----~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~-- 92 (954)
.++.++-..+..+- | ...|+.|-.+... ..+.-++++|+.|+....-.++-.+-++.+++-..|++.-..
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 34444444443332 2 4555555333222 245678999999987777666665566667776767664322
Q ss_pred --C-----CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 93 --P-----AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 93 --p-----~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
| +....+||.|.|..+++.+-|...|.+|-.....++++| +|++||.|.+..|+..|+++|+|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 2 345679999999999999999999999987777777766 689999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 002198 160 GEQLRVDFLR 169 (954)
Q Consensus 160 Gr~I~V~~a~ 169 (954)
.+.|+.....
T Consensus 259 srpiklRkS~ 268 (290)
T KOG0226|consen 259 SRPIKLRKSE 268 (290)
T ss_pred cchhHhhhhh
Confidence 9999875433
No 147
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.64 E-value=0.00012 Score=79.05 Aligned_cols=80 Identities=26% Similarity=0.438 Sum_probs=71.4
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC-----CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr-----G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
.....+|+|.||++.++.+||+++|..||.+..+.+..++ |+|-|.|...+||..|++.+++..+.|+.+++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3445789999999999999999999999999988888773 78999999999999999999999999999999887
Q ss_pred cCCcc
Q 002198 169 RSQPS 173 (954)
Q Consensus 169 ~sk~~ 173 (954)
.....
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 76543
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.64 E-value=7.4e-05 Score=88.42 Aligned_cols=78 Identities=23% Similarity=0.418 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec---------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd---------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
+..+.+|||+||+..++++.|...|..||+|..++|+-. +.+|||.|.+..||++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 345789999999999999999999999999999999833 57899999999999999999999999999999
Q ss_pred EEEccCC
Q 002198 165 VDFLRSQ 171 (954)
Q Consensus 165 V~~a~sk 171 (954)
+.|.+.-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.52 E-value=0.0003 Score=63.62 Aligned_cols=68 Identities=31% Similarity=0.442 Sum_probs=48.2
Q ss_pred CEEEEccCCcCCcHHHHHH----HHhccC-CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 21 SNLWVGNLSADTTDADLKE----LFGKFG-ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e----~Fs~yG-~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
..|+|.|||.+.+...|+. ++.-|| .|.+| +.+.|+|.|.+.+.|.+|.++|+|..+.|+.|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999998776664 455676 56666 45889999999999999999999999999999999874
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.34 E-value=0.00021 Score=77.02 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=69.8
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
..+..-....+||+|+.+.+|.+++...|+.||.|..|. .+..||||||+|.+.+.+.+|+. |++..|.|+.|
T Consensus 94 ~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 94 ERQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred hhhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 445677899999999999999999999999999997554 34579999999999999999995 99999999999
Q ss_pred EEEecC
Q 002198 87 KIEFAR 92 (954)
Q Consensus 87 ~V~~A~ 92 (954)
.+.+.+
T Consensus 173 ~vt~~r 178 (231)
T KOG4209|consen 173 EVTLKR 178 (231)
T ss_pred eeeeee
Confidence 998754
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.30 E-value=0.00011 Score=82.00 Aligned_cols=193 Identities=13% Similarity=0.078 Sum_probs=114.0
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec---------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd---------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
...|.|.||.+.+|.+.++.+|...|+|.++.+... ...|||.|.+...+..|. .|.++.|-++.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 347899999999999999999999999999998874 235999999999999998 5667777777776654
Q ss_pred ccCCccccc-CCCCCCCCC--CCCccCCCCCCCCCcc---cc------ccCCCCC--CCCCC-CCceEEEEcCCCCCCCC
Q 002198 168 LRSQPSRRE-QWPNSHDAR--DGPIIGRGTGFSDNHS---AY------KRSSSVG--RNRDG-PPSKILWVGYPPSVQMD 232 (954)
Q Consensus 168 a~sk~~~~~-~~~~~~~~r--~~~~~g~~~g~~~~~s---~~------~~~~~~~--~~~~~-~ps~Vlvvgn~ps~~vt 232 (954)
+-....... ......... .+.+...+.=.+.... .. ..+.... ..... .-.+++++..+.. .+.
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~-~~~ 164 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLIS-AAI 164 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchh-hhc
Confidence 433221111 000000000 0000000000000000 00 0000000 00000 0123344444442 367
Q ss_pred HHHHHHHHhhcCCEEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 233 EQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 233 EedLre~Fs~fG~V~~VkI~--~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
..++-+.|..+|+|....+- ...-+|.|+|......+.|+. ++|+.|.-........++
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 78899999999999877653 335688899999888888865 688888744444444443
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.28 E-value=0.00034 Score=75.38 Aligned_cols=78 Identities=29% Similarity=0.483 Sum_probs=70.4
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
.......+||+|+.+.+|.++++..|+.+|.|..+.+..+ +|++||+|.+.+.+..|+. |++..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3556889999999999999999999999999998888776 5789999999999999997 99999999999998
Q ss_pred EccCC
Q 002198 167 FLRSQ 171 (954)
Q Consensus 167 ~a~sk 171 (954)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87655
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.26 E-value=0.00082 Score=60.87 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=49.2
Q ss_pred CeEEEeCCCccCCHHHH----Hhhhcccc-ceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 98 KHLWVGGISQTVSKEEL----EEGFLKFG-NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL----~elFskfG-~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
..|+|.|||.+.+...| ++++..+| +|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 46899999999887765 55666776 777763 689999999999999999999999999999999987544
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.04 E-value=0.0018 Score=61.69 Aligned_cols=69 Identities=28% Similarity=0.432 Sum_probs=45.1
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC-----ccCCcceEEE
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS-----DFRGNPIKIE 89 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~-----~L~Gr~I~V~ 89 (954)
+.|.|.|+...++-++|++.|+.||.|.-|...+....|||.|.+.+.|.+|++.+... .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 67999999999999999999999999999988778889999999999999999877544 3445444443
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.03 E-value=0.00032 Score=78.50 Aligned_cols=136 Identities=16% Similarity=0.236 Sum_probs=107.3
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEE---------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT---------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~---------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
..|.|.||.+++|.+.+..+|.-+|+|.++. .......|||.|.+...+..|- .|.+++|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 4899999999999999999999999998877 2334678999999998888887 88888888887766443
Q ss_pred CC-----------------------------------------------------------CCCCCeEEEeCCCccCCHH
Q 002198 92 RP-----------------------------------------------------------AKPSKHLWVGGISQTVSKE 112 (954)
Q Consensus 92 ~p-----------------------------------------------------------~k~srkLfVgNLP~~vTee 112 (954)
-. ..-.++++|++|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 10 0013579999999999999
Q ss_pred HHHhhhccccceeEEEEeec--CCeeEEecCCHHHHHHHHHHhCCcee
Q 002198 113 ELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRLEDAAEALKNINGRQI 158 (954)
Q Consensus 113 dL~elFskfG~Ie~I~Ilrd--rG~AFVeF~t~EdA~~AIe~Lng~~i 158 (954)
++.++|..+|.|....+... ..+|-|+|........|++ ++|..+
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 99999999998876665433 4568899998888888885 444443
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.91 E-value=0.0026 Score=53.11 Aligned_cols=52 Identities=27% Similarity=0.437 Sum_probs=44.6
Q ss_pred ceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHH
Q 002198 218 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAK 272 (954)
Q Consensus 218 s~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAi 272 (954)
+.|.|-|++++ ..+.+..+|..||+|.++.+.....+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~---~~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD---LAEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch---HHHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 45677788774 55677789999999999999888899999999999999984
No 157
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.90 E-value=0.0033 Score=58.96 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=61.6
Q ss_pred CeEEEeCCCccCCHHHHHhhhccc--cceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeC----CeEEEE
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKF--GNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG----GEQLRV 165 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskf--G~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~----Gr~I~V 165 (954)
.+|+|+|||...|.++|.+++... |...-+.+.-| .|||||-|.+.++|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888643 45666666655 589999999999999999999999875 467778
Q ss_pred EEccCCc
Q 002198 166 DFLRSQP 172 (954)
Q Consensus 166 ~~a~sk~ 172 (954)
.+|+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8877654
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.89 E-value=0.0016 Score=62.01 Aligned_cols=72 Identities=24% Similarity=0.514 Sum_probs=45.8
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCc-----eeCCeEEEEEEcc
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR-----QIGGEQLRVDFLR 169 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~-----~i~Gr~I~V~~a~ 169 (954)
..|.|.++...++.++|++.|+.||.|..|.+.+....|||.|.+.++|+.|++.+... .+.+..+.+....
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 35788899999999999999999999999999988889999999999999999876433 5566666665443
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.86 E-value=0.00098 Score=73.28 Aligned_cols=98 Identities=19% Similarity=0.422 Sum_probs=73.0
Q ss_pred CCEEEEccCCcCCcHHHH------HHHHhccCCeeEEEecC-------CCcEE--EEEeCCHHHHHHHHHHhcCCccCCc
Q 002198 20 SSNLWVGNLSADTTDADL------KELFGKFGALDKVTTYS-------SRSFA--FVYFKRVEDAKAAKDALQGSDFRGN 84 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL------~e~Fs~yG~I~sV~~gk-------skG~A--FVeF~s~edA~~AL~~Lng~~L~Gr 84 (954)
.+-+||-+|++.+..+++ .++|.+||+|..|...+ ..+.+ ||+|.+.|||.+||.+.+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999999877663 38999999999887322 12333 9999999999999999999999999
Q ss_pred ceEEEecCC-----------CCCCCeEEEeCC---CccCCHHHHHhh
Q 002198 85 PIKIEFARP-----------AKPSKHLWVGGI---SQTVSKEELEEG 117 (954)
Q Consensus 85 ~I~V~~A~p-----------~k~srkLfVgNL---P~~vTeedL~el 117 (954)
.|+..+... =....|.|+--- -...|++||...
T Consensus 194 ~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 194 VLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred eEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 999988641 122345565332 235678888654
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.78 E-value=0.003 Score=52.72 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=45.7
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHH
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL 73 (954)
++.|-|.|.+.+..+ +|.++|..||+|+.+.........||+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 367889999888775 45569999999999998878899999999999999985
No 161
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.68 E-value=0.0036 Score=68.04 Aligned_cols=62 Identities=24% Similarity=0.357 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcCCEEEEEEeCC-------CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 233 EQMLHNAMILFGEIERIKSYPS-------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 233 EedLre~Fs~fG~V~~VkI~~s-------rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
|+++++.+++||.|..|.|+.. --..||+|...++|.+|+-.|||+.|+|+.+..+|-+.+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 3578999999999999988632 2368999999999999999999999999999999876543
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.66 E-value=0.046 Score=62.48 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=48.4
Q ss_pred CCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCC-------------------CcEEEEEeCCHHHHHHHHHHhC
Q 002198 216 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-------------------RNYSFVEFRSVDEARRAKEGLQ 276 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~s-------------------rG~AFVeF~s~EdA~kAie~LN 276 (954)
-+++++++-+++. +-.-+-|.++|..+|.|+.|+|... +-+|+|+|++.+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~-Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPL-DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCc-chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 3566666666663 4566899999999999999998421 4589999999999999998875
Q ss_pred C
Q 002198 277 G 277 (954)
Q Consensus 277 G 277 (954)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 3
No 163
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.56 E-value=0.0012 Score=70.85 Aligned_cols=58 Identities=28% Similarity=0.418 Sum_probs=50.1
Q ss_pred HHHHHHHh-hcCCEEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEec
Q 002198 234 QMLHNAMI-LFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 291 (954)
Q Consensus 234 edLre~Fs-~fG~V~~VkI~~-----srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak 291 (954)
++|...|+ +||+|+++++-. -+|-++|.|..+|+|++|++.|||++|+|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555666 999999997742 26899999999999999999999999999999999983
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.48 E-value=0.0088 Score=66.06 Aligned_cols=76 Identities=26% Similarity=0.490 Sum_probs=64.4
Q ss_pred CCCeEEEeCCCccCCHHHH------HhhhccccceeEEEEeecC-------C--eeEEecCCHHHHHHHHHHhCCceeCC
Q 002198 96 PSKHLWVGGISQTVSKEEL------EEGFLKFGNIEDFKFLKDG-------N--TAFVEYSRLEDAAEALKNINGRQIGG 160 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL------~elFskfG~Ie~I~Ilrdr-------G--~AFVeF~t~EdA~~AIe~Lng~~i~G 160 (954)
..+-+||-+|+..+-.|++ .++|.+||+|.+|.+-+.. + ..||+|.+.|||.++|.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3567999999988776663 5789999999999987652 2 25999999999999999999999999
Q ss_pred eEEEEEEccCC
Q 002198 161 EQLRVDFLRSQ 171 (954)
Q Consensus 161 r~I~V~~a~sk 171 (954)
|.|+..+-+.+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999887655
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.28 E-value=0.0086 Score=64.37 Aligned_cols=97 Identities=28% Similarity=0.398 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCccCCcceEEEecCCCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecC
Q 002198 67 EDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYS 141 (954)
Q Consensus 67 edA~~AL~~Lng~~L~Gr~I~V~~A~p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~ 141 (954)
.-|..|..+|++....++.++|.|+. ...|||.||..-++.+.+.+.|+.||.|+...++.| .+.++|+|.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~----~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAM----HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFA 80 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeec----cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhh
Confidence 34666777889999999999999984 288999999999999999999999999998877766 245999999
Q ss_pred CHHHHHHHHHHhCCce----eCCeEEEEEE
Q 002198 142 RLEDAAEALKNINGRQ----IGGEQLRVDF 167 (954)
Q Consensus 142 t~EdA~~AIe~Lng~~----i~Gr~I~V~~ 167 (954)
..-.|.+|+..+.-.- ..++..-|..
T Consensus 81 ~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 81 KKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred cchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 9999999998874333 3455555543
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.11 E-value=0.015 Score=54.98 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-------------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCc
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-------------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN 84 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-------------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr 84 (954)
...+-|.|-|.|++ ....|.+.|+.||.|.+.. .....+.-.|+|.+..+|.+|| ..||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 45677999999999 5567789999999998774 4556788999999999999999 8899999887
Q ss_pred ce-EEEec
Q 002198 85 PI-KIEFA 91 (954)
Q Consensus 85 ~I-~V~~A 91 (954)
.| -|.++
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 44 46655
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.10 E-value=0.02 Score=54.03 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=53.1
Q ss_pred CceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEE-------------EeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCc
Q 002198 217 PSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK-------------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDP 283 (954)
Q Consensus 217 ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~Vk-------------I~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr 283 (954)
.+.|+|-|+++. ....|-+.|++||+|.+.. +....+...|+|++..+|.+|+. -||+.|+|.
T Consensus 6 ~~wVtVFGfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG---GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CeEEEEEccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 356888899875 5667888999999998775 55667899999999999999986 599999985
Q ss_pred -eEEEEEec
Q 002198 284 -RITIMFSS 291 (954)
Q Consensus 284 -~I~Vs~Ak 291 (954)
.+-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 55577764
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.00 E-value=0.0078 Score=68.54 Aligned_cols=76 Identities=28% Similarity=0.334 Sum_probs=63.1
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-------------------CCeeEEecCCHHHHHHHHHHh
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-------------------GNTAFVEYSRLEDAAEALKNI 153 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-------------------rG~AFVeF~t~EdA~~AIe~L 153 (954)
+....++|.+.|||.+-.-+.|.++|+.+|.|..|+|++. +-+|+|+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4457899999999999999999999999999999999865 234999999999999999888
Q ss_pred CCceeCCeEEEEEEc
Q 002198 154 NGRQIGGEQLRVDFL 168 (954)
Q Consensus 154 ng~~i~Gr~I~V~~a 168 (954)
+...-+-.-++|.+.
T Consensus 307 ~~e~~wr~glkvkLl 321 (484)
T KOG1855|consen 307 NPEQNWRMGLKVKLL 321 (484)
T ss_pred chhhhhhhcchhhhh
Confidence 766555555555443
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.68 E-value=0.019 Score=62.68 Aligned_cols=62 Identities=27% Similarity=0.513 Sum_probs=54.8
Q ss_pred HHHHHhhhccccceeEEEEeecCCe-------eEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 111 KEELEEGFLKFGNIEDFKFLKDGNT-------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 111 eedL~elFskfG~Ie~I~IlrdrG~-------AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
++++++..++||.|..|.|....++ -||+|.+.++|.+|+-.|||..|+||.++..|....+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 4678899999999999999887554 8999999999999999999999999999998876543
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.65 E-value=0.012 Score=65.92 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=68.6
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeE--------------EEecCCCcEEEEEeCCHHHHHHHHHHhcCCc
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK--------------VTTYSSRSFAFVYFKRVEDAKAAKDALQGSD 80 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~s--------------V~~gkskG~AFVeF~s~edA~~AL~~Lng~~ 80 (954)
.......+|||-+||..+++++|.++|.++|.|.. ..+.+.|+-|.|.|.+...|++|++-.++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 33667889999999999999999999999998741 1266789999999999999999999999999
Q ss_pred cCCcceEEEecC
Q 002198 81 FRGNPIKIEFAR 92 (954)
Q Consensus 81 L~Gr~I~V~~A~ 92 (954)
|.|..|+|.++.
T Consensus 141 f~gn~ikvs~a~ 152 (351)
T KOG1995|consen 141 FCGNTIKVSLAE 152 (351)
T ss_pred ccCCCchhhhhh
Confidence 999999998774
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.50 E-value=1.3 Score=49.78 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=56.2
Q ss_pred ceEEEEcCCCCCCCCHHHHHHHHhhcC--CEEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCce-EEEE
Q 002198 218 SKILWVGYPPSVQMDEQMLHNAMILFG--EIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPR-ITIM 288 (954)
Q Consensus 218 s~Vlvvgn~ps~~vtEedLre~Fs~fG--~V~~VkI~------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~-I~Vs 288 (954)
+-+++|||+- +-++++||.+.+...| .|.+++++ .+||||+|...+....++.++.|-.++|.|.. +.+.
T Consensus 80 k~~~YvGNL~-W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLL-WYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEeccee-EEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 4467777776 4467778888777666 45566665 46899999999999999999999999999864 4455
Q ss_pred EecC
Q 002198 289 FSSS 292 (954)
Q Consensus 289 ~Ak~ 292 (954)
|-|.
T Consensus 159 ~NK~ 162 (498)
T KOG4849|consen 159 YNKT 162 (498)
T ss_pred cchh
Confidence 5543
No 172
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.29 E-value=0.013 Score=68.94 Aligned_cols=80 Identities=26% Similarity=0.383 Sum_probs=70.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhc-cccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCcee---CCeEEEEEEcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFL-KFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI---GGEQLRVDFLR 169 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFs-kfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i---~Gr~I~V~~a~ 169 (954)
...++.|||.||-.-.|...|++++. ..|.|++.+|-+-+..|||.|.+.++|.....+|||..| +++.|.|.|..
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 45688999999999999999999999 566888888877789999999999999999999999987 56999999987
Q ss_pred CCcc
Q 002198 170 SQPS 173 (954)
Q Consensus 170 sk~~ 173 (954)
....
T Consensus 521 ~del 524 (718)
T KOG2416|consen 521 ADEL 524 (718)
T ss_pred hhHH
Confidence 6543
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.17 E-value=0.013 Score=62.97 Aligned_cols=67 Identities=16% Similarity=0.318 Sum_probs=60.1
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC-----------C-------eeEEecCCHHHHHHHHHHhCCce
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----------N-------TAFVEYSRLEDAAEALKNINGRQ 157 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr-----------G-------~AFVeF~t~EdA~~AIe~Lng~~ 157 (954)
.+..||+++||+.++..-|+++|+.||.|-.|.+.... + .|+|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56789999999999999999999999999999987541 1 19999999999999999999999
Q ss_pred eCCeE
Q 002198 158 IGGEQ 162 (954)
Q Consensus 158 i~Gr~ 162 (954)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.14 E-value=0.01 Score=63.96 Aligned_cols=59 Identities=24% Similarity=0.465 Sum_probs=50.2
Q ss_pred HHHHhhhc-cccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 112 EELEEGFL-KFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 112 edL~elFs-kfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
++|...|+ +||.|+++++..+ .|.+||.|..+++|++|++.||+..+.|++|..++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444555 9999999988776 47799999999999999999999999999999987643
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.01 E-value=0.016 Score=62.35 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=57.2
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe--------------cCCCc----EEEEEeCCHHHHHHHHHHhcCCc
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT--------------YSSRS----FAFVYFKRVEDAKAAKDALQGSD 80 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~--------------gkskG----~AFVeF~s~edA~~AL~~Lng~~ 80 (954)
.+..|||.+||+.+.-..|+++|+.||.|-.|.. +.++. -|+|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999988861 12222 27899999999999999999999
Q ss_pred cCCc
Q 002198 81 FRGN 84 (954)
Q Consensus 81 L~Gr 84 (954)
|+|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9998
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.068 Score=62.91 Aligned_cols=73 Identities=21% Similarity=0.352 Sum_probs=56.6
Q ss_pred CceEEEEcCCCCCCCCH-----HHHHHHHhhcCCEEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeC-CceE
Q 002198 217 PSKILWVGYPPSVQMDE-----QMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRI 285 (954)
Q Consensus 217 ps~Vlvvgn~ps~~vtE-----edLre~Fs~fG~V~~VkI~-----~srG~AFVeF~s~EdA~kAie~LNG~~f~-Gr~I 285 (954)
-..|++|.+.|-+.... ..|..+|+++|.|..+.+. ..+||.|++|++..+|..|++.|||+.|. +++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 35677777766432222 3567899999999988886 34899999999999999999999999987 5666
Q ss_pred EEEE
Q 002198 286 TIMF 289 (954)
Q Consensus 286 ~Vs~ 289 (954)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6644
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.88 E-value=0.023 Score=66.96 Aligned_cols=77 Identities=29% Similarity=0.437 Sum_probs=67.7
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHh-ccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCcc---CCcceEEEec
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFG-KFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF---RGNPIKIEFA 91 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs-~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L---~Gr~I~V~~A 91 (954)
..+.++.|+|.||-.-.|...|++++. ..|.|++.++.+=|..|||.|.+.++|.+....|+|..+ +.+.|.|.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 456799999999999999999999999 666777888888889999999999999999999999886 4667888776
Q ss_pred C
Q 002198 92 R 92 (954)
Q Consensus 92 ~ 92 (954)
.
T Consensus 520 ~ 520 (718)
T KOG2416|consen 520 R 520 (718)
T ss_pred c
Confidence 3
No 178
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.84 E-value=0.016 Score=66.87 Aligned_cols=77 Identities=27% Similarity=0.305 Sum_probs=67.8
Q ss_pred CCCCEEEEccCCcCC-cHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCC
Q 002198 18 PPSSNLWVGNLSADT-TDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK 95 (954)
Q Consensus 18 ~~s~tLfV~NLP~sv-TE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k 95 (954)
...|.|-+.-.|..+ |.++|...|.+||+|+.|.+..+.-.|.|+|.+..+|-+|. ...+..|.|+.|+|.|.++..
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 356778888888886 56999999999999999997777778999999999998888 789999999999999998755
No 179
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.78 E-value=0.023 Score=63.72 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=68.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhcccccee--------EEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIE--------DFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie--------~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
.....+|||-+|+..+++.+|.++|.++|.|. .|+|-++ |+.|.|.|++...|..|+..++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567999999999999999999999998775 3444444 567999999999999999999999999
Q ss_pred CeEEEEEEccCCcc
Q 002198 160 GEQLRVDFLRSQPS 173 (954)
Q Consensus 160 Gr~I~V~~a~sk~~ 173 (954)
+..|+|.++.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998877653
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.03 E-value=0.15 Score=51.14 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCC
Q 002198 235 MLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 295 (954)
Q Consensus 235 dLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~ 295 (954)
+|-+.|..||+|.=|++. .+.-+|+|.+-+.|.+|+. |+|..++|+.|+|+..++.=.
T Consensus 52 ~ll~~~~~~GevvLvRfv--~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV--GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE--TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEe--CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 677788899999988887 4688999999999999975 899999999999998876544
No 181
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.59 E-value=0.14 Score=53.55 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=49.8
Q ss_pred CHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC--CCeeCCceEEEEEecC
Q 002198 232 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ--GRLFNDPRITIMFSSS 292 (954)
Q Consensus 232 tEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LN--G~~f~Gr~I~Vs~Ak~ 292 (954)
..+.|+++|..|+.+..+...++-+...|.|.+.++|.+|+..|+ +..|.|..++|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 568899999999999999999999999999999999999999999 9999999999999943
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.23 E-value=0.37 Score=48.13 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=54.0
Q ss_pred CCceEEEEcCCCCCCCCH--HHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 216 PPSKILWVGYPPSVQMDE--QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtE--edLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
.-+.|++.-+......+| ..+...++.||.|++|... ++..|.|.|.+...|++|+.++.. ..-|..+.+.|-
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 345555554333332333 3566677899999999874 678999999999999999999876 567888888875
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.02 E-value=0.18 Score=59.36 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCccCCcceEEEecCCCCCCCeEEEeCCCccCCHHHHHhhhcc--ccceeEEEEeecCCeeEEecCCH
Q 002198 66 VEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLK--FGNIEDFKFLKDGNTAFVEYSRL 143 (954)
Q Consensus 66 ~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k~srkLfVgNLP~~vTeedL~elFsk--fG~Ie~I~IlrdrG~AFVeF~t~ 143 (954)
.+-..++|++.-+..+..+-.+|.. ....+.|.|+-||...-.|+|+.||+. +-++.+|.+..+ ...||+|++.
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp---~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd 222 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRP---NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESD 222 (684)
T ss_pred hHHHHHHHhcCCCceeccCcccccc---CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecc
Confidence 4445677777777778777777763 445667778999999999999999984 557888887654 4689999999
Q ss_pred HHHHHHHHHhCC--ceeCCeEEEE
Q 002198 144 EDAAEALKNING--RQIGGEQLRV 165 (954)
Q Consensus 144 EdA~~AIe~Lng--~~i~Gr~I~V 165 (954)
.||+.|.+.|.- +.|.|+.|..
T Consensus 223 ~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 223 TDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred hhHHHHHHHHHHHHHhhcCcchhh
Confidence 999999987743 4677776654
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.61 E-value=0.26 Score=49.50 Aligned_cols=76 Identities=26% Similarity=0.429 Sum_probs=53.1
Q ss_pred CCCCCCCEEEEccCCcC-----CcH----HHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcc
Q 002198 15 KEAPPSSNLWVGNLSAD-----TTD----ADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~s-----vTE----~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~ 85 (954)
.-.++.-||.|.=+..+ .-. .+|.+.|..||++.-|+.-. +.-+|+|.+.+.|.+|+ .++|..+.|+.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal-s~dg~~v~g~~ 98 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGIQVNGRT 98 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH-HGCCSEETTEE
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH-ccCCcEECCEE
Confidence 33566677777655511 222 47889999999988777432 46899999999999999 99999999999
Q ss_pred eEEEecCC
Q 002198 86 IKIEFARP 93 (954)
Q Consensus 86 I~V~~A~p 93 (954)
|+|+...|
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99997643
No 185
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.41 E-value=0.33 Score=57.43 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=57.7
Q ss_pred CCCCEEEEccCCcCC--c----HHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccC-Ccc
Q 002198 18 PPSSNLWVGNLSADT--T----DADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFR-GNP 85 (954)
Q Consensus 18 ~~s~tLfV~NLP~sv--T----E~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~-Gr~ 85 (954)
.-.+.|.|.|+|.-- . ..-|.++|+++|+|+.+. .+..+||.|++|.+..+|..|++.+||..|. +++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 567889999998542 2 245668999999998776 4668999999999999999999999998764 556
Q ss_pred eEEE
Q 002198 86 IKIE 89 (954)
Q Consensus 86 I~V~ 89 (954)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6554
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.21 E-value=0.13 Score=53.39 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=45.1
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhc-cCCe---eEEE-------e-cCCCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGK-FGAL---DKVT-------T-YSSRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~-yG~I---~sV~-------~-gkskG~AFVeF~s~edA~~AL~~Lng~~L~G 83 (954)
+..+..+|.||.||+++||+++.+.++. ++.. ..+. . ...-.-|||.|.+.+++....+.++|..|.+
T Consensus 3 ~~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 3 KEKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ------EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CcccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3556779999999999999999997777 6554 2332 1 1123459999999999999999999977643
Q ss_pred c
Q 002198 84 N 84 (954)
Q Consensus 84 r 84 (954)
.
T Consensus 83 ~ 83 (176)
T PF03467_consen 83 S 83 (176)
T ss_dssp T
T ss_pred C
Confidence 3
No 187
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.84 E-value=0.38 Score=56.84 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhc--cCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC--ccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGK--FGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS--DFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~--yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~--~L~Gr~I~V~~ 90 (954)
....|.|.|+.||.+.-+++|+.+|+. |-++.+|....+. -=||+|.+..||..|.+.|... .|-|+.|....
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 556889999999999999999999996 5566777754433 3599999999999999877643 37788776543
No 188
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.69 E-value=1.1 Score=49.78 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=55.2
Q ss_pred CCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCce
Q 002198 215 GPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPR 284 (954)
Q Consensus 215 ~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~ 284 (954)
.....|-|.|+++. .-..|-.+|++||+|.+......-++-.|.|.+.-+|.+|+.. ||+.|+|..
T Consensus 195 ~~D~WVTVfGFppg---~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 195 AADTWVTVFGFPPG---QVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred cccceEEEeccCcc---chhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 34567888899885 5567889999999999888776667999999999999999874 999998754
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.98 E-value=0.19 Score=56.35 Aligned_cols=73 Identities=22% Similarity=0.423 Sum_probs=58.9
Q ss_pred CCEEEEccCCcCCcHHHHH---HHHhccCCeeEEEecCC---------CcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 20 SSNLWVGNLSADTTDADLK---ELFGKFGALDKVTTYSS---------RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~---e~Fs~yG~I~sV~~gks---------kG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
.+.+||-+|+..+..+++. ++|.+||.|..|...+. -.-+||+|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4678899999887555544 78999999998884331 12489999999999999999999999999988
Q ss_pred EEecC
Q 002198 88 IEFAR 92 (954)
Q Consensus 88 V~~A~ 92 (954)
+.+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 87754
No 190
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.79 E-value=0.21 Score=58.02 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=54.6
Q ss_pred CHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 232 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 232 tEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
+-.+|..+|.+||+|..|.+.-.--.|.|+|.+..+|-+|. ...+..|+|+-|+|.|.+...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 55789999999999999999766678999999999998885 579999999999999998744
No 191
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=89.15 E-value=0.4 Score=53.65 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=60.3
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhcccc--ceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFG--NIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG--~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
...++|||||-|-+|.+||.+.+...| .+.++++..+ ||||+|-..+..+.++.++.|-.+.|+|+.-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 356899999999999999999888777 5667777755 6899999999999999999999999999766664
No 192
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.02 E-value=0.95 Score=49.22 Aligned_cols=87 Identities=28% Similarity=0.346 Sum_probs=67.1
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEc
Q 002198 145 DAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVG 224 (954)
Q Consensus 145 dA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvg 224 (954)
-|..|..+|++....|+.++|-|+.. ..+.|++
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-----------------------------------------------a~l~V~n 38 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-----------------------------------------------AELYVVN 38 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-----------------------------------------------ceEEEEe
Confidence 46677778899999999999998754 1345555
Q ss_pred CCCCCCCCHHHHHHHHhhcCCEEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCee
Q 002198 225 YPPSVQMDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLF 280 (954)
Q Consensus 225 n~ps~~vtEedLre~Fs~fG~V~~VkI~-----~srG~AFVeF~s~EdA~kAie~LNG~~f 280 (954)
+... ++.+.|...|+.||.|+...+. +..+-++|+|...-.|.+|....+-.-|
T Consensus 39 l~~~--~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 39 LMQG--ASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred cchh--hhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 5553 8889999999999999865553 3457899999999999999887744333
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.62 E-value=1.7 Score=43.57 Aligned_cols=76 Identities=25% Similarity=0.344 Sum_probs=59.9
Q ss_pred CCCCCCCEEEEccCCcCCc----HHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 15 KEAPPSSNLWVGNLSADTT----DADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svT----E~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
.++.+..+|.|+=|..++. -..|...++.||.|.+|. ...+-.|.|.|++...|-.|+...+. ..-|..+++.|
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT-~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVT-LCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceee-ecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 3477889999987776653 345566778999999997 34677899999999999999977665 66788888888
Q ss_pred cC
Q 002198 91 AR 92 (954)
Q Consensus 91 A~ 92 (954)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 64
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.60 E-value=1.3 Score=49.19 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCc-ceEEEe
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN-PIKIEF 90 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr-~I~V~~ 90 (954)
...=|-|-|.|+..+ .-|...|.+||.|++.....+..+-+|.|.+.-+|.+|| ..+|+.|.|. .|-|..
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeee
Confidence 356788889887755 466789999999999998888899999999999999999 7788888776 334443
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.60 E-value=0.84 Score=47.90 Aligned_cols=61 Identities=30% Similarity=0.338 Sum_probs=49.0
Q ss_pred CHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhC--CceeCCeEEEEEEccC
Q 002198 110 SKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN--GRQIGGEQLRVDFLRS 170 (954)
Q Consensus 110 TeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Ln--g~~i~Gr~I~V~~a~s 170 (954)
.++.|+++|..++.+..+..++.-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 468899999999999999999888889999999999999999999 8999999999998843
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.93 E-value=0.18 Score=56.49 Aligned_cols=76 Identities=21% Similarity=0.398 Sum_probs=62.1
Q ss_pred CCeEEEeCCCccCCHHHH---HhhhccccceeEEEEeecC-------C--eeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 97 SKHLWVGGISQTVSKEEL---EEGFLKFGNIEDFKFLKDG-------N--TAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL---~elFskfG~Ie~I~Ilrdr-------G--~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
.+.+||-+|+..+..+++ .+.|.+||.|.+|.+.++. + .+||+|+..++|..||..++|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 467888899877655554 4579999999999888764 1 289999999999999999999999999988
Q ss_pred EEEccCCc
Q 002198 165 VDFLRSQP 172 (954)
Q Consensus 165 V~~a~sk~ 172 (954)
..+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 87766543
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.69 E-value=1.6 Score=40.11 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=42.1
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCC
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING 155 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng 155 (954)
...+|. +|......||.++|+.||.|.--.| +...|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhcc
Confidence 345555 9999999999999999998865555 457899999999999999988753
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.57 E-value=2.3 Score=39.03 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=41.6
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG 78 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng 78 (954)
.....+| ..|.++...||.++|+.||.|.=-++ +-..|||...+.+.|..|++.+..
T Consensus 8 RdHVFhl-tFPkeWK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHL-TFPKEWKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEE-E--TT--HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEE-eCchHhhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhcc
Confidence 3344555 59999999999999999999763334 346799999999999999977753
No 199
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.44 E-value=8.7 Score=42.84 Aligned_cols=165 Identities=15% Similarity=0.270 Sum_probs=102.2
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC-------------CeeEEecCCHHHHHHHHHH----hCC--c
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-------------NTAFVEYSRLEDAAEALKN----ING--R 156 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr-------------G~AFVeF~t~EdA~~AIe~----Lng--~ 156 (954)
.+|.|.+.|+..+++--++...|-+||+|++|.++.+. -...+.|-+.+.+-..... |.. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999775 3589999998877665433 322 3
Q ss_pred eeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHH-
Q 002198 157 QIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQM- 235 (954)
Q Consensus 157 ~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEed- 235 (954)
.+....|.+.|..-+-...... ...... ....-.............+|.+.+-+-.. +++++
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~----~~~~~~-----------~~~~~~~~L~~~i~~~gATRSl~IeF~~~--~~~~dl 156 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDP----NDEEAD-----------FSDYLVASLQYNIINRGATRSLAIEFKDP--VDKDDL 156 (309)
T ss_pred hcCCcceeEEEEEEeccccccc----cccccc-----------hhhHHhhhhhheeecCCcceEEEEEecCc--cchhHH
Confidence 4667777777765432211100 000000 00000000011112334577788877654 54443
Q ss_pred HHHHH---hhcC----CEEEEEEeC--------CCcEEEEEeCCHHHHHHHHHHhCC
Q 002198 236 LHNAM---ILFG----EIERIKSYP--------SRNYSFVEFRSVDEARRAKEGLQG 277 (954)
Q Consensus 236 Lre~F---s~fG----~V~~VkI~~--------srG~AFVeF~s~EdA~kAie~LNG 277 (954)
+.+.+ ..-+ .|++|.+.. .++||.+.|-+..-|.+.++.|.-
T Consensus 157 ~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 157 IEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred HHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 33322 2112 467887753 267999999999999998887763
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.09 E-value=5.7 Score=38.36 Aligned_cols=77 Identities=23% Similarity=0.345 Sum_probs=55.9
Q ss_pred CCCceEEEEcCCCCCCCCHHHHHHHHhhcC-CEEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCCeeC---CceEE
Q 002198 215 GPPSKILWVGYPPSVQMDEQMLHNAMILFG-EIERIKSYPS----RNYSFVEFRSVDEARRAKEGLQGRLFN---DPRIT 286 (954)
Q Consensus 215 ~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG-~V~~VkI~~s----rG~AFVeF~s~EdA~kAie~LNG~~f~---Gr~I~ 286 (954)
...+.++++..++. -.+-++|..+.+.+- .|..++|.++ +--++++|.+.++|.+-.+.+||+.|+ -...+
T Consensus 10 ~~~~~~~~l~vp~~-~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Ch 88 (110)
T PF07576_consen 10 ERRSTLCCLAVPPY-MTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCH 88 (110)
T ss_pred CCCceEEEEEeCcc-cccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeE
Confidence 34467777777774 356667776666554 5678888754 447889999999999999999999987 34566
Q ss_pred EEEecC
Q 002198 287 IMFSSS 292 (954)
Q Consensus 287 Vs~Ak~ 292 (954)
|-|.++
T Consensus 89 vvfV~~ 94 (110)
T PF07576_consen 89 VVFVKS 94 (110)
T ss_pred EEEEEE
Confidence 666543
No 201
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.72 E-value=2.5 Score=37.59 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCCHHHHHHHHhhcCC-----EEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 221 LWVGYPPSVQMDEQMLHNAMILFGE-----IERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 221 lvvgn~ps~~vtEedLre~Fs~fG~-----V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
|+++..-...++..+|-.++..-+. |-.|++. ..|+||+-... .|.++++.|++..++|+++.|+.|
T Consensus 3 l~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 3 LFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555554445788889888887754 4567776 67899987664 688899999999999999999864
No 202
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.43 E-value=4 Score=35.46 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=41.0
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhcc----CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHh
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKF----GALDKVTTYSSRSFAFVYFKRVEDAKAAKDAL 76 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~y----G~I~sV~~gkskG~AFVeF~s~edA~~AL~~L 76 (954)
-..|+|+|+ -+++.+||+.+|..| +. ..|..- +-..|=|.|.+.+.|.+||..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWI-dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWI-DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEe-cCCcEEEEECCHHHHHHHHHcC
Confidence 357999999 568889999999999 43 345421 2234778899999999999653
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.09 E-value=2.5 Score=44.09 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=49.8
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhcc-ccce---eEEEEeec-C-------CeeEEecCCHHHHHHHHHHhCCceeCC--
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLK-FGNI---EDFKFLKD-G-------NTAFVEYSRLEDAAEALKNINGRQIGG-- 160 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFsk-fG~I---e~I~Ilrd-r-------G~AFVeF~t~EdA~~AIe~Lng~~i~G-- 160 (954)
....+|.|+.||+.+|++++.+.+.. ++.. ..+.-... . ..|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45669999999999999999998776 5544 22221111 1 239999999999999999999987732
Q ss_pred ---eEEEEEEccCC
Q 002198 161 ---EQLRVDFLRSQ 171 (954)
Q Consensus 161 ---r~I~V~~a~sk 171 (954)
....|+++--+
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 45566666553
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.31 E-value=0.83 Score=56.46 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=63.4
Q ss_pred eEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCcee--CCeEEEEEEccCCc
Q 002198 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI--GGEQLRVDFLRSQP 172 (954)
Q Consensus 99 kLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i--~Gr~I~V~~a~sk~ 172 (954)
+.++.|.+-..+-.-|..+|.+||.|.+++.+++-+.|.|+|...+.|..|+++++|+.+ -|-+.+|.+++.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344555566777788999999999999999999999999999999999999999999965 57889998887643
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.36 E-value=1.3 Score=54.92 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeC--CceEEEEEecCCCCC
Q 002198 230 QMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFN--DPRITIMFSSSELAP 296 (954)
Q Consensus 230 ~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~--Gr~I~Vs~Ak~e~~~ 296 (954)
..+-..|..+|+.||.|.++...++-..|.|+|.+.|.|..|.++|+|+++. |-+.+|.|++.-.+-
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ 377 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMY 377 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccc
Confidence 3566789999999999999999988999999999999999999999999864 889999999776653
No 206
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=80.82 E-value=20 Score=44.60 Aligned_cols=72 Identities=10% Similarity=0.130 Sum_probs=55.0
Q ss_pred eEEEEcCCCCCCCCHHHHHHHHhhcCCEE-----EEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 219 KILWVGYPPSVQMDEQMLHNAMILFGEIE-----RIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 219 ~Vlvvgn~ps~~vtEedLre~Fs~fG~V~-----~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
..|+++..-...++..+|-.++..-+.|. .|+|+ ..|.||+-.. +.|.+.++.|++..++|++|.|..++..
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 45777776656688888888887666554 45555 6799999865 4577888999999999999999988544
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=78.97 E-value=2.7 Score=39.00 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=44.9
Q ss_pred EEEEeCCHHHHHHHHHHhcC-CccCCcceEEEecC------------CCCCCCeEEEeCCCccCCHHHHHhhhc
Q 002198 59 AFVYFKRVEDAKAAKDALQG-SDFRGNPIKIEFAR------------PAKPSKHLWVGGISQTVSKEELEEGFL 119 (954)
Q Consensus 59 AFVeF~s~edA~~AL~~Lng-~~L~Gr~I~V~~A~------------p~k~srkLfVgNLP~~vTeedL~elFs 119 (954)
|+|+|....-|.+.++.-.- ..+.+..+.|.... .....++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 78999999999999943222 23556666554432 134578999999999999999988764
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=78.12 E-value=13 Score=35.94 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=44.1
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCC-eeEEE---e-cCCCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVT---T-YSSRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~-I~sV~---~-gkskG~AFVeF~s~edA~~AL~~Lng~~L~G 83 (954)
...+..+.+-..|..++-++|..+...+-. |..++ . ..++..++++|++.++|.+..+..||..+..
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 333444455444455555667666665543 33333 2 2356679999999999999999999988753
No 209
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=76.99 E-value=11 Score=32.78 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=41.6
Q ss_pred CCceEEEEcCCCCCCCCHHHHHHHHhhcC---CEEEEEEeCCCcEEEEEeCCHHHHHHHHHHh
Q 002198 216 PPSKILWVGYPPSVQMDEQMLHNAMILFG---EIERIKSYPSRNYSFVEFRSVDEARRAKEGL 275 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtEedLre~Fs~fG---~V~~VkI~~srG~AFVeF~s~EdA~kAie~L 275 (954)
.+..+.+.|... .+-++|+.+|..|. ...+|+-+.+ ..|-|.|.+.+.|.+|+.+|
T Consensus 4 rpeavhirGvd~---lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE---LSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC---CCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 456777777643 78889999999991 2345555544 36779999999999998765
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.80 E-value=7.9 Score=34.07 Aligned_cols=55 Identities=11% Similarity=0.227 Sum_probs=46.5
Q ss_pred cCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 108 TVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 108 ~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
.++-++++..+++|+ -.+|+.++..=||.|.+.++|+++.+..++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467799999999997 4566778888899999999999999999999888766654
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.72 E-value=10 Score=33.35 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEE
Q 002198 229 VQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 287 (954)
Q Consensus 229 ~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~V 287 (954)
..++-++++..+..|+ ..+|.. ++.=-||.|.+.++|+++.+..+|+.+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I~~--d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRIRD--DRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cceEEe--cCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3478899999999995 555543 3434479999999999999999999998877654
No 212
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.61 E-value=9.5 Score=45.90 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=38.1
Q ss_pred HHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeC--CceEEEEEe
Q 002198 237 HNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFN--DPRITIMFS 290 (954)
Q Consensus 237 re~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~--Gr~I~Vs~A 290 (954)
+..+..|+ +.+.+.. ||.|+|.+.+.|....+..+|..|. +..+.++|+
T Consensus 255 ~~kLR~Yq-~~rLkYY----yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 255 REKLRQYQ-LNRLKYY----YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHH-hhhheeE----EEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 44445553 4444433 9999999999999999999999997 678888887
No 213
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=72.73 E-value=59 Score=36.57 Aligned_cols=153 Identities=15% Similarity=0.234 Sum_probs=100.1
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecC-------------CCcEEEEEeCCHHHHHHHHHH----hc-
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-------------SRSFAFVYFKRVEDAKAAKDA----LQ- 77 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gk-------------skG~AFVeF~s~edA~~AL~~----Ln- 77 (954)
++-.+|.|.+.|+..+++-..+...|-+||.|++|..-. ....+.+-|-+.+.|...... |.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998322 347899999999998776542 22
Q ss_pred -CCccCCcceEEEecC-----C------------------------CCCCCeEEEeCCCccCCHHHH-Hh---hhcccc-
Q 002198 78 -GSDFRGNPIKIEFAR-----P------------------------AKPSKHLWVGGISQTVSKEEL-EE---GFLKFG- 122 (954)
Q Consensus 78 -g~~L~Gr~I~V~~A~-----p------------------------~k~srkLfVgNLP~~vTeedL-~e---lFskfG- 122 (954)
++.++...+.+.|.. . ...+|.|.|.-- ..++++++ .+ ++..-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 223555555554432 0 123455666433 33434443 22 222223
Q ss_pred ---ceeEEEEeec--------CCeeEEecCCHHHHHHHHHHhCCc--eeC-CeEEEEEEcc
Q 002198 123 ---NIEDFKFLKD--------GNTAFVEYSRLEDAAEALKNINGR--QIG-GEQLRVDFLR 169 (954)
Q Consensus 123 ---~Ie~I~Ilrd--------rG~AFVeF~t~EdA~~AIe~Lng~--~i~-Gr~I~V~~a~ 169 (954)
.+++|.++.. +.||.++|-+...|.+.++-+... ..+ .+...|....
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 4777877643 468999999999999999776533 322 3444555443
No 214
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=70.93 E-value=3.3 Score=53.95 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=27.0
Q ss_pred cCCCCCCCCCCCCCccC------CCCCCccCCCcccccccccCCCCCcCCCC
Q 002198 799 SQQGMVYSRPLPNFSIA------PQAAPVAVSPPVHQQYQFAAPSNSQKGYG 844 (954)
Q Consensus 799 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (954)
..+++..+.|++...|| ++++...+.|+-+.|--|..+.+.|+-=|
T Consensus 1994 qa~g~~~~m~p~g~~mp~~qs~q~~~~~~~l~p~~~~q~~ps~~~~~q~m~~ 2045 (2220)
T KOG3598|consen 1994 QAMGNTSSMPPSGPPMPMGQSMQSAGATQQLQPMQKHQMGPSMSGMNQNMGG 2045 (2220)
T ss_pred hccCCCCCcCCCCCCCCcccccccCCCceecCchHhhccCCcccccccchhh
Confidence 34455555555555555 44555666666666666777666666433
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.67 E-value=11 Score=44.29 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=56.1
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCC-eeEEE---ec-CCCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVT---TY-SSRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~-I~sV~---~g-kskG~AFVeF~s~edA~~AL~~Lng~~L~G 83 (954)
.-+.+.+++.|.|-.+|.-+|-.||..|+..+-. |.+|+ .+ .++-..+|+|++.++|....+.+||..|..
T Consensus 67 s~~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 67 SLKNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred ccccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3344555999999999999999999999987643 44444 22 245569999999999999999999988754
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.05 E-value=9 Score=44.88 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=57.2
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhcccc-ceeEEEEeecC----CeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLKDG----NTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG-~Ie~I~Ilrdr----G~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
.+..|+|-.+|..++-.||..|...+- .|.+|++++|. -...|+|.+.++|....+.+||+.|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 378899999999999999999988775 79999999973 24999999999999999999999885
No 217
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=63.21 E-value=4.5 Score=49.24 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=63.7
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
+..+..++||+|+...+..+-++.+....|.|..+...+ |||.+|..+.-+..|+..++...++|..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456678999999999999999999999999888877665 999999999999999999998899888877754
No 218
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=61.36 E-value=8.6 Score=34.13 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=35.4
Q ss_pred CCcHHHHHHHHhccCCee-----EEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 31 DTTDADLKELFGKFGALD-----KVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 31 svTE~dL~e~Fs~yG~I~-----sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
.++..+|..++...+.|. .|.. ...|+||+-.. +.|..+++.|++..+.|+.++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I--~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI--FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE--eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 478899999999887654 4444 45788998754 5888899999999999999999864
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=61.30 E-value=9.7 Score=39.74 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=58.5
Q ss_pred CCCceEEEEcCCCCCCCCH---HHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCc-eEEEEEe
Q 002198 215 GPPSKILWVGYPPSVQMDE---QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDP-RITIMFS 290 (954)
Q Consensus 215 ~~ps~Vlvvgn~ps~~vtE---edLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr-~I~Vs~A 290 (954)
.-++.++...+...+.++. ....++|..|.+.....++++.++.-|.|.+.+.|..|...+++..|.|+ .+++-|+
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 3445556665555443333 34556677777666667778888999999999999999999999999998 8888888
Q ss_pred cCC
Q 002198 291 SSE 293 (954)
Q Consensus 291 k~e 293 (954)
...
T Consensus 88 Q~~ 90 (193)
T KOG4019|consen 88 QPG 90 (193)
T ss_pred cCC
Confidence 443
No 220
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=59.55 E-value=6 Score=48.49 Aligned_cols=56 Identities=29% Similarity=0.638 Sum_probs=37.5
Q ss_pred eEEEEcCCCC--chhhhHHHHHHHhhccccceeeeecCCceEEEeCCChhhhceeeeCCCccEEEEEeecc
Q 002198 562 DIVFFLPDSE--DDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKVVGPERLYGVVLKLP 630 (954)
Q Consensus 562 ~vvff~p~s~--~D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflVPPsdf~~~vlkv~g~~~~~gvvl~~~ 630 (954)
.|-.|=|-=+ .||.+|-++|.=+|.| |||+||+ |||.+|.++.-+= .|--|++..|
T Consensus 14 ~I~tF~PtmeEF~dF~~yi~~IEs~G~h-~aGlaKV--------ipPkeWk~r~~~~----di~di~I~~P 71 (690)
T KOG0958|consen 14 GIPTFYPTMEEFADFSAYIAYIESQGAH-RAGLAKV--------IPPKEWKPRLMYD----DIDDIKIPAP 71 (690)
T ss_pred CcceeCcCHHHHHhHHHHHHHHHhccch-hcCeeee--------eCCccCCcccccC----chhheecChh
Confidence 3445555433 4777777777777877 9999998 9999998765432 4444444444
No 221
>PHA01365 hypothetical protein
Probab=48.26 E-value=6.8 Score=35.38 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=50.1
Q ss_pred ccChhHHHHHhhhccCceEEEEcCCCCchhhhHHHHHHHhhccccceeeeec-------------CCceEEEeCCChhhh
Q 002198 545 RTGLDMLAKHYAEAIGFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFD-------------DGTTLFLVPPSDFLS 611 (954)
Q Consensus 545 Rt~ldml~kh~~~a~~~~vvff~p~s~~D~~~y~ef~~YL~~K~Ra~v~k~~-------------~~~tlflVPPsdf~~ 611 (954)
|-+++.|---|.+.+..+++||+|..++=-.+|--|.+ .+|-..|++=.| +.+.+||-|--||+-
T Consensus 5 ~e~ikrilqK~fkdskieki~~lps~~dv~~KYiif~r--~s~~y~G~~vvdGiqIPFiAev~lngk~~iYLyP~KDFYL 82 (91)
T PHA01365 5 KNGIKKLLQKCFKDSSIDVIFMSCNNLSPHKKYMIIDP--ESKYYIGYILTDGIKIPFIAEVWHNNTTRIYLDPRKDFYL 82 (91)
T ss_pred HHHHHHHHHHHhCCCceEEEEEecCCCCccccEEEEEE--ecceEEEEEEEcceeccEEeeeeeCCeEEEEEccccceeH
Confidence 44566766677788999999999988887777776654 466677777654 367899999999974
Q ss_pred c
Q 002198 612 K 612 (954)
Q Consensus 612 ~ 612 (954)
-
T Consensus 83 a 83 (91)
T PHA01365 83 A 83 (91)
T ss_pred H
Confidence 3
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=44.94 E-value=27 Score=38.59 Aligned_cols=141 Identities=22% Similarity=0.359 Sum_probs=83.7
Q ss_pred cCCcHHHHHHHHhccC---CeeEEEecCCCcEEEEEeCCHH----HHHHHHHHhcCCccC--Cc--ceEEEec-------
Q 002198 30 ADTTDADLKELFGKFG---ALDKVTTYSSRSFAFVYFKRVE----DAKAAKDALQGSDFR--GN--PIKIEFA------- 91 (954)
Q Consensus 30 ~svTE~dL~e~Fs~yG---~I~sV~~gkskG~AFVeF~s~e----dA~~AL~~Lng~~L~--Gr--~I~V~~A------- 91 (954)
.+++.=||++-+++.- ..+++++. ....-||.|.-+- -....+.+|+|..|. |- .++|..+
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckir-esnid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfp 125 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIR-ESNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFP 125 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeec-ccccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCC
Confidence 3466667777766431 12233333 2356688886543 344555566765532 22 2222211
Q ss_pred ------------------CCCCCCCeEEEeCCCcc------------CCHHHHHhhhccccceeEEEEeec---------
Q 002198 92 ------------------RPAKPSKHLWVGGISQT------------VSKEELEEGFLKFGNIEDFKFLKD--------- 132 (954)
Q Consensus 92 ------------------~p~k~srkLfVgNLP~~------------vTeedL~elFskfG~Ie~I~Ilrd--------- 132 (954)
+|.....+||+.+||-. .+++-|+..|+.||.|..|.|.--
T Consensus 126 srhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~ 205 (445)
T KOG2891|consen 126 SRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNG 205 (445)
T ss_pred cccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcC
Confidence 13444568888888731 356789999999999988877521
Q ss_pred -------CCe---------eEEecCCHHHHHHHHHHhCCcee----CC----eEEEEEEccCC
Q 002198 133 -------GNT---------AFVEYSRLEDAAEALKNINGRQI----GG----EQLRVDFLRSQ 171 (954)
Q Consensus 133 -------rG~---------AFVeF~t~EdA~~AIe~Lng~~i----~G----r~I~V~~a~sk 171 (954)
.|+ |||.|....--..|+..|.|..+ .+ -.++|.|.++.
T Consensus 206 kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 206 KISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred ccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 122 67877777777777777777654 22 46777776654
No 223
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=44.57 E-value=18 Score=35.80 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=67.7
Q ss_pred CCcHHHHHHHHhc----cCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCCC---------C
Q 002198 31 DTTDADLKELFGK----FGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP---------S 97 (954)
Q Consensus 31 svTE~dL~e~Fs~----yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k~---------s 97 (954)
..+-..|...+.. .|.+. +. .-..++..+.|.+.+++.+++ ....-.+.|..+.+..-.+... .
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~-i~-~l~~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~ 104 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVK-IR-DLGDNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSPDFNPSEVKFEHIP 104 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEE-EE-EeCCCeEEEEEEeccceeEEE-ecccccccccchhhhhhcccccccccceeccc
Confidence 3556666665554 33333 22 225689999999999999999 4455567788777765543221 1
Q ss_pred CeEEEeCCCcc-CCHHHHHhhhccccceeEEEEeec
Q 002198 98 KHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKD 132 (954)
Q Consensus 98 rkLfVgNLP~~-vTeedL~elFskfG~Ie~I~Ilrd 132 (954)
--|.|.|||.. .+++-++++.+.+|.+.++.....
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 22556899976 577788999999999998886644
No 224
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=39.31 E-value=43 Score=41.28 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=56.5
Q ss_pred CCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 216 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
....|||.++.. .+..+-++.+...+|.|.+.+... |+|.+|....-+.+|+..++-..++|.++.+.-.
T Consensus 39 ~~~~vfv~~~~~--~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISY--LVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhh--hhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 334555555554 488888999999999998887763 9999999999999999999988998888776543
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=38.19 E-value=67 Score=35.86 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=42.6
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCe-eEEEecCCCcEEEEEeCCH
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-DKVTTYSSRSFAFVYFKRV 66 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I-~sV~~gkskG~AFVeF~s~ 66 (954)
.+.....-|+|+||+.++.-.||+..+.+.|.+ .+|......|-||+.|.+.
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 334556779999999999999999999988754 3666677889999999874
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=37.08 E-value=29 Score=38.54 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=39.2
Q ss_pred CeEEEeCCCccCCHHHHHhhhcccc-ceeEEEEeecCCeeEEecCCHH
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLKDGNTAFVEYSRLE 144 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG-~Ie~I~IlrdrG~AFVeF~t~E 144 (954)
.-|+|+||+.++.-.||+..+.+.| .-.++...-..+.||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 3599999999999999999999888 3456666666788999998764
No 227
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=37.06 E-value=2.9e+02 Score=33.40 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=8.9
Q ss_pred CCcccccCCCccccc
Q 002198 660 EHVLPVDYNRFSHDD 674 (954)
Q Consensus 660 ~~~~~~~~~~~~~~~ 674 (954)
++-++|++-++..|=
T Consensus 305 ~q~~~~~~~~~d~ey 319 (554)
T KOG0119|consen 305 DQQMPMSSANFDREY 319 (554)
T ss_pred ccccchhhhccCHHH
Confidence 455566666666663
No 228
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.15 E-value=1.4e+02 Score=36.43 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=76.7
Q ss_pred CCCCCEEEEccCCcC-CcHHHHHHHHhcc----CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 17 APPSSNLWVGNLSAD-TTDADLKELFGKF----GALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 17 ~~~s~tLfV~NLP~s-vTE~dL~e~Fs~y----G~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
..++++|-|.||..+ +.-.||.-+|+.| |.|.+|.++.+. |- .++|....+.|-.+.+.-.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------FG--------keRM~eEeV~GP~~el~~~ 236 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------FG--------KERMKEEEVHGPPKELFKP 236 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------hh--------HHHhhhhcccCChhhhccc
Confidence 567899999999977 7889999888855 478888876652 32 3345555566665544322
Q ss_pred CCCCCCCeEEEeCCCccCCH--HHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 002198 92 RPAKPSKHLWVGGISQTVSK--EELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDF 167 (954)
Q Consensus 92 ~p~k~srkLfVgNLP~~vTe--edL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~G--r~I~V~~ 167 (954)
........ .+.++ +-.++-+..|+. ...+ --||.|+|.+.+.|....+.|.|..|.. ..+-+.|
T Consensus 237 ~e~~~~s~-------sD~ee~~~~~~~kLR~Yq~-~rLk----YYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 237 VEEYKESE-------SDDEEEEDVDREKLRQYQL-NRLK----YYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred cccCcccc-------cchhhhhhHHHHHHHHHHh-hhhe----eEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11111111 01111 112333344430 0000 1369999999999999999999999875 4454444
Q ss_pred c
Q 002198 168 L 168 (954)
Q Consensus 168 a 168 (954)
.
T Consensus 305 I 305 (650)
T KOG2318|consen 305 I 305 (650)
T ss_pred c
Confidence 3
No 229
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=31.98 E-value=44 Score=26.88 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHhhccccceeeeecCCceEEEeCCChhh
Q 002198 573 DFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFL 610 (954)
Q Consensus 573 D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflVPPsdf~ 610 (954)
|+..|-+-++-++ .+.|+||+ |||.+|.
T Consensus 14 Dp~~yi~~i~~~~--~~yGi~KI--------vPP~~w~ 41 (42)
T smart00545 14 DPLAYISKIRPQA--EKYGICKV--------VPPKSWK 41 (42)
T ss_pred CHHHHHHHHHHHH--hhCCEEEE--------ECCCCCC
Confidence 5555555555543 45799998 9999873
No 230
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=29.60 E-value=1.2e+02 Score=33.39 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=82.5
Q ss_pred CCCceeEeeee--cCCcceeeeEeeeccCCccc------cCC--ce------------eccccccChhHHHHHhhhccCc
Q 002198 504 DSDFIWRGIIA--KGGTPVCRARCVPFGKGIES------ELP--EV------------VNCSARTGLDMLAKHYAEAIGF 561 (954)
Q Consensus 504 ~~~~~w~g~ia--KgG~pvC~a~c~~v~k~~~~------~lP--e~------------ldc~aRt~ldml~kh~~~a~~~ 561 (954)
.-++.|.|..- |.|..++-+.|..+...... .+| -. -+...+|-+++......++...
T Consensus 103 gv~r~~~~~~g~~k~~~~~~~v~l~~~~~~~~~~l~~~L~~p~~w~~~~~~~~~~~~~~~~~~~tk~~la~~~i~~a~~~ 182 (273)
T PF13546_consen 103 GVGRQYDHSAGRGKSGNCQVGVHLSYVDGGGSCPLDFRLYLPKSWTEDKERRNRAGIPEEQEFRTKPELALEMIDRARQA 182 (273)
T ss_pred cccccccCccccccccccceEEEEEeccCCcccchhhhhhccccccchhhhhhccccccccccccHHHHHHHHHHHHHhc
Confidence 44678888888 99999999988887664433 234 00 1234667777777777666654
Q ss_pred eE--EEEcCCCCchhhhHHHHHHHhhccccceeeeecCCceEEEeCCChhhhceeeeCCCccEEEEEe
Q 002198 562 DI--VFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKVVGPERLYGVVL 627 (954)
Q Consensus 562 ~v--vff~p~s~~D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflVPPsdf~~~vlkv~g~~~~~gvvl 627 (954)
.+ =.+|.| +-+..-.+|+.-|.+.+---|+.+..++.+|+-||..--.+ .|.-+.||-.+
T Consensus 183 g~~~~~vvaD--s~y~~~~~f~~~l~~~~~~~i~~vr~n~~~~~~~~~~~~~~----rGRPr~~g~~~ 244 (273)
T PF13546_consen 183 GIPARWVVAD--SWYGSSPAFRKALRERGLHYIGRVRSNRKVYYPPPPPPPPK----RGRPRKYGRRI 244 (273)
T ss_pred ccccceEEec--cccCChHHHHHHHHHCCceEEEeeccCCEEEcCCccccCCC----CCCCCCCCCcC
Confidence 32 114444 44556779999999988889999999999999998554433 78888888663
No 231
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=28.35 E-value=1.1e+02 Score=33.27 Aligned_cols=61 Identities=33% Similarity=0.466 Sum_probs=49.0
Q ss_pred ChhHHHHHhhh-ccCceEEEEcCCCCchhhhHHHHHHHhhccccceeeeecCCceEEEeCCChhhhceeee
Q 002198 547 GLDMLAKHYAE-AIGFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKV 616 (954)
Q Consensus 547 ~ldml~kh~~~-a~~~~vvff~p~s~~D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflVPPsdf~~~vlkv 616 (954)
.|-.|+|-.-+ -...+||+|.-.-+. -.+.++|++.|-.| .++..|.-|||...|+++|.+
T Consensus 124 eLv~~akrlkk~~Vaidii~FGE~~~~-~e~l~~fida~N~~--------~~gshlv~Vppg~~L~d~l~s 185 (259)
T KOG2884|consen 124 ELVKLAKRLKKNKVAIDIINFGEAENN-TEKLFEFIDALNGK--------GDGSHLVSVPPGPLLSDALLS 185 (259)
T ss_pred HHHHHHHHHHhcCeeEEEEEecccccc-HHHHHHHHHHhcCC--------CCCceEEEeCCCccHHHHhhc
Confidence 56777776654 458899999865444 78999999999876 389999999999988888765
No 232
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=27.69 E-value=1e+02 Score=33.87 Aligned_cols=34 Identities=18% Similarity=0.499 Sum_probs=30.4
Q ss_pred eEEEEcCCC--CchhhhHHHHHHHhhccccceeeee
Q 002198 562 DIVFFLPDS--EDDFASYTEFLRYLGSKNRAGVAKF 595 (954)
Q Consensus 562 ~vvff~p~s--~~D~~~y~ef~~YL~~K~Ra~v~k~ 595 (954)
...|++|+. ..+...|.-+++-|.+++|+|||++
T Consensus 110 ~s~~l~P~~~~~~s~~af~aL~~am~~~~kvai~r~ 145 (272)
T cd00594 110 ESYYLVPDDSDKGSEKAFSALRRALLEKDKVAIARY 145 (272)
T ss_pred CcEEEEcCCCCcccHHHHHHHHHHHHHcCcEEEEEE
Confidence 456778888 5889999999999999999999997
No 233
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=27.54 E-value=42 Score=35.21 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=56.9
Q ss_pred eEEEeCCCccC-----CHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCe-EEEEEEccCC
Q 002198 99 HLWVGGISQTV-----SKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGE-QLRVDFLRSQ 171 (954)
Q Consensus 99 kLfVgNLP~~v-----TeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr-~I~V~~a~sk 171 (954)
.+.+.+|...+ .+....++|..|.+.....+++..+..-|-|.+.+.|..|...+++..|.|. .++.-++...
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 35555555433 3445677888888888888888888899999999999999999999999887 8888777654
No 234
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=25.91 E-value=81 Score=29.44 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=43.1
Q ss_pred eEEecCCHHHHHHHHHHh-CCceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCC
Q 002198 136 AFVEYSRLEDAAEALKNI-NGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRD 214 (954)
Q Consensus 136 AFVeF~t~EdA~~AIe~L-ng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~ 214 (954)
|.|+|.+.+-|...++.- +...++++.+.|...--....-. .......
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~-------------------------------k~qv~~~ 49 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQ-------------------------------KFQVFSG 49 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCce-------------------------------EEEEEEc
Confidence 689999999999998541 12245666666643221110000 0000013
Q ss_pred CCCceEEEEcCCCCCCCCHHHHHHHHh
Q 002198 215 GPPSKILWVGYPPSVQMDEQMLHNAMI 241 (954)
Q Consensus 215 ~~ps~Vlvvgn~ps~~vtEedLre~Fs 241 (954)
....++++.|+++. .+|++|++.++
T Consensus 50 vs~rtVlvsgip~~--l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDV--LDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCC--CChhhheeeEE
Confidence 34567888888874 89999988753
No 235
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.65 E-value=1.2e+02 Score=34.03 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=40.6
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCCCCCeEEEeCCCccCCHHHHHhhhcc
Q 002198 59 AFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLK 120 (954)
Q Consensus 59 AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k~srkLfVgNLP~~vTeedL~elFsk 120 (954)
|||.|++.++|..|++.+.... .+.+.++.| .+.+.|.-.||..+..+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A---PeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA---PEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC---CCcccccccccCCChHHHHHHHHHHH
Confidence 7999999999999997544333 355577765 34556777888777777777765543
No 236
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.44 E-value=1.5e+02 Score=27.40 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=37.6
Q ss_pred eCCCccCCHHHHHhhhcc-cc-ceeEEEEeecC-C--eeEEecCCHHHHHHHHHH
Q 002198 103 GGISQTVSKEELEEGFLK-FG-NIEDFKFLKDG-N--TAFVEYSRLEDAAEALKN 152 (954)
Q Consensus 103 gNLP~~vTeedL~elFsk-fG-~Ie~I~Ilrdr-G--~AFVeF~t~EdA~~AIe~ 152 (954)
=-++..+++.+|++.++. || .|.+|..+.-. + -|||.+....+|.+....
T Consensus 26 F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 26 FIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 334568899999999985 56 77788766553 2 499999998888877543
No 237
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.96 E-value=1.6e+02 Score=26.74 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=37.9
Q ss_pred EEeCCCccCCHHHHHhhhcc-cc-ceeEEEEeecCC---eeEEecCCHHHHHHHHHH
Q 002198 101 WVGGISQTVSKEELEEGFLK-FG-NIEDFKFLKDGN---TAFVEYSRLEDAAEALKN 152 (954)
Q Consensus 101 fVgNLP~~vTeedL~elFsk-fG-~Ie~I~IlrdrG---~AFVeF~t~EdA~~AIe~ 152 (954)
|+=.++..+++.+|++.++. || .|.+|..+.-++ -|||++..-++|.+.-..
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 34445668999999999985 56 677777665432 499999988888776543
No 238
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=21.69 E-value=1.4e+02 Score=33.30 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=28.7
Q ss_pred EEEEcCCCC---chhhhHHHHHHHhhccccceeeee
Q 002198 563 IVFFLPDSE---DDFASYTEFLRYLGSKNRAGVAKF 595 (954)
Q Consensus 563 vvff~p~s~---~D~~~y~ef~~YL~~K~Ra~v~k~ 595 (954)
-.|++|+.+ .....|.-|++-|.+++++|||++
T Consensus 117 s~fl~P~~~~~~gs~~af~aL~~am~~~~kvaIa~~ 152 (287)
T cd00788 117 SYFIYPDESDYKGSTRLFAALLRSCLKKNKVAICWY 152 (287)
T ss_pred ceeEecCcccccCcHHHHHHHHHHHHhcCcEEEEEE
Confidence 457778873 578899999999999999999998
No 239
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.41 E-value=91 Score=27.75 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.4
Q ss_pred ccccChhHHHHHhhhccCceEEEEcCC
Q 002198 543 SARTGLDMLAKHYAEAIGFDIVFFLPD 569 (954)
Q Consensus 543 ~aRt~ldml~kh~~~a~~~~vvff~p~ 569 (954)
-+.+|.|+|+..|++.-++.++-|-||
T Consensus 40 ga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 40 GAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred CCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 456899999999999999999999886
No 240
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.93 E-value=18 Score=43.46 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=53.7
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
...|+|+++|++++++-++|..+++++-.+..+. ..+...+.+|.|+..-+...|+..|++.-+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 4578999999999999999999999886554443 34456778999998877777777778777665433
Done!