Query 002198
Match_columns 954
No_of_seqs 306 out of 2152
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 5.1E-38 1.7E-42 339.5 29.2 236 17-295 19-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3.6E-37 1.2E-41 334.2 26.3 239 14-293 35-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 8.9E-28 3E-32 250.1 18.6 157 17-173 12-183 (213)
4 3md3_A Nuclear and cytoplasmic 99.9 5.1E-27 1.7E-31 231.0 18.3 149 21-169 1-165 (166)
5 1b7f_A Protein (SXL-lethal pro 99.9 9.7E-27 3.3E-31 230.2 19.1 150 19-168 2-168 (168)
6 1fxl_A Paraneoplastic encephal 99.9 1.6E-26 5.4E-31 227.7 18.6 150 19-168 1-167 (167)
7 2qfj_A FBP-interacting repress 99.9 2.1E-26 7.1E-31 237.3 20.2 155 18-172 26-206 (216)
8 2g4b_A Splicing factor U2AF 65 99.9 9.1E-27 3.1E-31 231.6 16.8 151 18-169 2-172 (172)
9 2yh0_A Splicing factor U2AF 65 99.9 1.3E-26 4.3E-31 235.7 16.9 154 18-172 2-195 (198)
10 3pgw_A U1-A; protein-RNA compl 99.9 3.7E-26 1.3E-30 246.4 21.0 154 16-169 5-281 (282)
11 1l3k_A Heterogeneous nuclear r 99.9 2E-26 6.8E-31 233.9 17.7 160 13-174 6-186 (196)
12 4f02_A Polyadenylate-binding p 99.9 4.4E-26 1.5E-30 237.3 18.1 162 92-293 10-181 (213)
13 3nmr_A Cugbp ELAV-like family 99.9 4.7E-26 1.6E-30 226.4 17.3 152 18-169 1-175 (175)
14 2adc_A Polypyrimidine tract-bi 99.9 1.3E-25 4.3E-30 236.4 20.0 157 15-171 29-228 (229)
15 3md3_A Nuclear and cytoplasmic 99.9 2.2E-25 7.7E-30 219.2 19.8 155 98-292 1-166 (166)
16 1fje_B Nucleolin RBD12, protei 99.9 2.3E-25 8E-30 222.6 17.8 155 15-171 8-174 (175)
17 1qm9_A Polypyrimidine tract-bi 99.9 1.6E-25 5.4E-30 228.9 16.8 153 19-171 2-197 (198)
18 2cjk_A Nuclear polyadenylated 99.9 4.3E-26 1.5E-30 225.6 12.0 151 18-171 1-166 (167)
19 1b7f_A Protein (SXL-lethal pro 99.9 7.2E-25 2.5E-29 216.7 20.0 153 96-290 2-168 (168)
20 1fxl_A Paraneoplastic encephal 99.9 6.7E-25 2.3E-29 216.0 19.3 152 97-290 2-167 (167)
21 2adc_A Polypyrimidine tract-bi 99.9 1E-24 3.5E-29 229.4 21.4 193 94-293 31-228 (229)
22 3tyt_A Heterogeneous nuclear r 99.9 3.9E-25 1.3E-29 230.2 17.8 151 18-168 2-204 (205)
23 1qm9_A Polypyrimidine tract-bi 99.9 7.9E-25 2.7E-29 223.7 19.3 191 96-293 2-197 (198)
24 3pgw_A U1-A; protein-RNA compl 99.9 1.6E-24 5.5E-29 233.6 22.4 198 94-292 6-282 (282)
25 3sde_A Paraspeckle component 1 99.9 7.1E-25 2.4E-29 235.3 19.0 157 13-172 15-180 (261)
26 2yh0_A Splicing factor U2AF 65 99.9 1.6E-24 5.3E-29 220.3 20.0 176 96-294 3-195 (198)
27 2qfj_A FBP-interacting repress 99.9 2.6E-25 8.9E-30 229.1 14.4 170 96-296 27-208 (216)
28 2g4b_A Splicing factor U2AF 65 99.9 8.1E-25 2.8E-29 217.5 17.0 153 96-291 3-172 (172)
29 3smz_A Protein raver-1, ribonu 99.9 2.1E-24 7.1E-29 233.0 18.5 157 18-174 93-267 (284)
30 3tyt_A Heterogeneous nuclear r 99.9 4.2E-24 1.4E-28 222.4 19.7 190 95-290 2-204 (205)
31 1l3k_A Heterogeneous nuclear r 99.9 4.4E-24 1.5E-28 216.6 18.5 165 94-296 10-186 (196)
32 3nmr_A Cugbp ELAV-like family 99.9 4.8E-24 1.6E-28 211.9 17.6 155 96-291 2-175 (175)
33 2ghp_A U4/U6 snRNA-associated 99.9 1.1E-23 3.9E-28 228.0 17.8 152 19-171 116-291 (292)
34 2cjk_A Nuclear polyadenylated 99.9 4.6E-24 1.6E-28 211.1 12.3 153 96-293 2-166 (167)
35 1fje_B Nucleolin RBD12, protei 99.9 2.2E-23 7.4E-28 208.4 16.9 160 93-293 9-174 (175)
36 3sde_A Paraspeckle component 1 99.9 3.3E-22 1.1E-26 214.5 19.6 152 95-294 20-180 (261)
37 2i2y_A Fusion protein consists 99.7 1.2E-17 4E-22 164.5 10.6 119 53-172 10-149 (150)
38 2kn4_A Immunoglobulin G-bindin 99.7 5.3E-17 1.8E-21 160.7 12.5 120 53-172 10-151 (158)
39 4f25_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 154.9 9.0 95 19-113 4-113 (115)
40 2i2y_A Fusion protein consists 99.7 1.9E-16 6.6E-21 155.8 12.5 134 133-293 13-148 (150)
41 2kn4_A Immunoglobulin G-bindin 99.7 6.4E-16 2.2E-20 152.9 15.7 135 133-296 13-153 (158)
42 3lqv_A PRE-mRNA branch site pr 99.6 7.4E-16 2.5E-20 144.6 8.7 102 17-123 5-109 (115)
43 4fxv_A ELAV-like protein 1; RN 99.6 2.6E-15 8.7E-20 138.4 9.9 81 13-93 12-98 (99)
44 4f25_A Polyadenylate-binding p 99.6 5.5E-15 1.9E-19 139.4 9.9 77 96-172 4-84 (115)
45 3r27_A HnRNP L, heterogeneous 99.5 2E-14 6.9E-19 133.3 10.7 82 13-94 14-97 (100)
46 2hvz_A Splicing factor, argini 99.5 8.4E-15 2.9E-19 134.2 8.2 86 21-106 1-100 (101)
47 2wbr_A GW182, gawky, LD47780P; 99.5 2.2E-14 7.4E-19 129.7 9.5 84 18-119 5-88 (89)
48 2ad9_A Polypyrimidine tract-bi 99.5 3E-14 1E-18 136.2 11.0 89 7-95 18-108 (119)
49 3r27_A HnRNP L, heterogeneous 99.5 3E-14 1E-18 132.1 10.3 79 94-172 18-98 (100)
50 1sjq_A Polypyrimidine tract-bi 99.5 1.7E-14 6E-19 134.8 8.4 80 94-173 13-94 (105)
51 2cq1_A PTB-like protein L; RRM 99.5 6E-14 2E-18 130.2 11.9 83 13-95 8-92 (101)
52 2cpj_A Non-POU domain-containi 99.5 4.8E-14 1.6E-18 128.8 11.1 83 13-95 8-90 (99)
53 1wex_A Hypothetical protein (r 99.5 6.1E-14 2.1E-18 130.7 11.9 82 14-95 9-92 (104)
54 1sjq_A Polypyrimidine tract-bi 99.5 2.8E-14 9.5E-19 133.5 9.5 79 17-95 13-93 (105)
55 2do4_A Squamous cell carcinoma 99.5 6E-14 2.1E-18 128.3 11.6 86 11-96 8-98 (100)
56 1why_A Hypothetical protein ri 99.5 1.1E-13 3.6E-18 126.1 13.1 82 15-96 12-95 (97)
57 1x4d_A Matrin 3; structural ge 99.5 2.8E-14 9.6E-19 132.8 9.3 78 95-172 13-93 (102)
58 1x4d_A Matrin 3; structural ge 99.5 3.9E-14 1.3E-18 131.8 10.2 79 17-95 12-93 (102)
59 4fxv_A ELAV-like protein 1; RN 99.5 3.4E-14 1.2E-18 130.9 9.6 75 96-170 18-98 (99)
60 2lxi_A RNA-binding protein 10; 99.5 8.5E-15 2.9E-19 132.7 5.1 77 20-96 1-85 (91)
61 2dnm_A SRP46 splicing factor; 99.5 6.5E-14 2.2E-18 128.7 11.0 84 13-96 6-95 (103)
62 1x5u_A Splicing factor 3B subu 99.5 1.1E-13 3.8E-18 127.4 12.3 83 14-96 9-97 (105)
63 2cq1_A PTB-like protein L; RRM 99.5 9.4E-14 3.2E-18 128.9 11.8 81 94-174 12-94 (101)
64 2dnz_A Probable RNA-binding pr 99.5 1.2E-13 4.2E-18 124.8 12.0 80 17-96 2-87 (95)
65 2dgs_A DAZ-associated protein 99.5 1.3E-13 4.6E-18 125.7 12.5 82 14-96 4-91 (99)
66 1whw_A Hypothetical protein ri 99.5 8.9E-14 3.1E-18 126.8 11.0 81 16-96 4-90 (99)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.5 7.2E-14 2.5E-18 123.5 10.0 76 17-92 4-85 (85)
68 2cph_A RNA binding motif prote 99.5 1.8E-13 6.1E-18 126.4 13.0 84 13-96 8-99 (107)
69 3s8s_A Histone-lysine N-methyl 99.5 6.4E-14 2.2E-18 131.6 10.1 77 17-93 3-85 (110)
70 2dnh_A Bruno-like 5, RNA bindi 99.5 1.5E-13 5.1E-18 126.6 12.3 82 15-96 10-99 (105)
71 2dgo_A Cytotoxic granule-assoc 99.5 1E-13 3.5E-18 130.0 11.2 85 12-96 7-97 (115)
72 2x1f_A MRNA 3'-END-processing 99.5 9.8E-14 3.3E-18 126.1 10.6 77 19-95 1-83 (96)
73 2ytc_A PRE-mRNA-splicing facto 99.5 6.5E-14 2.2E-18 124.0 9.2 77 16-92 8-85 (85)
74 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.4E-13 4.8E-18 126.5 11.8 83 14-96 9-95 (103)
75 2d9p_A Polyadenylate-binding p 99.5 1E-13 3.6E-18 127.4 10.9 84 13-96 8-95 (103)
76 2khc_A Testis-specific RNP-typ 99.5 6.8E-14 2.3E-18 131.8 9.8 80 13-92 33-118 (118)
77 2ad9_A Polypyrimidine tract-bi 99.5 6.1E-14 2.1E-18 134.0 9.5 83 93-175 27-111 (119)
78 2lxi_A RNA-binding protein 10; 99.5 3E-14 1E-18 129.1 7.1 79 97-175 1-87 (91)
79 2la4_A Nuclear and cytoplasmic 99.5 5.3E-14 1.8E-18 128.9 8.7 79 15-93 22-100 (101)
80 2wbr_A GW182, gawky, LD47780P; 99.5 6.2E-14 2.1E-18 126.7 8.9 74 96-169 6-79 (89)
81 2cq3_A RNA-binding protein 9; 99.5 2E-13 6.8E-18 125.5 12.5 84 13-96 8-95 (103)
82 2cq0_A Eukaryotic translation 99.5 8.7E-14 3E-18 127.9 10.0 84 13-96 8-97 (103)
83 1x4c_A Splicing factor, argini 99.5 1.7E-13 5.7E-18 127.6 12.1 79 94-173 12-95 (108)
84 1wex_A Hypothetical protein (r 99.5 2.2E-13 7.5E-18 127.0 12.8 81 214-295 11-93 (104)
85 3bs9_A Nucleolysin TIA-1 isofo 99.5 6.7E-14 2.3E-18 124.2 8.9 76 18-93 4-85 (87)
86 2e5h_A Zinc finger CCHC-type a 99.5 1.2E-13 4E-18 124.6 10.6 81 12-92 8-94 (94)
87 1why_A Hypothetical protein ri 99.5 7.4E-14 2.5E-18 127.1 9.4 87 85-172 6-94 (97)
88 1x5s_A Cold-inducible RNA-bind 99.5 1.3E-13 4.6E-18 126.3 11.2 81 16-96 8-94 (102)
89 2cpz_A CUG triplet repeat RNA- 99.5 1.1E-13 3.7E-18 130.0 10.7 83 14-96 19-107 (115)
90 1x4a_A Splicing factor, argini 99.5 1.6E-13 5.6E-18 127.5 11.8 81 16-96 18-101 (109)
91 3md1_A Nuclear and cytoplasmic 99.5 9.5E-14 3.3E-18 122.2 9.5 75 20-94 1-81 (83)
92 2dnq_A RNA-binding protein 4B; 99.5 2E-13 6.8E-18 122.6 11.7 79 16-96 4-82 (90)
93 2kxn_B Transformer-2 protein h 99.5 1E-13 3.6E-18 133.7 10.4 83 13-95 39-127 (129)
94 2dgv_A HnRNP M, heterogeneous 99.5 1.3E-13 4.5E-18 123.8 10.1 80 17-96 5-88 (92)
95 1x4f_A Matrin 3; structural ge 99.5 1E-13 3.5E-18 131.1 9.7 79 17-95 22-103 (112)
96 2e5j_A Methenyltetrahydrofolat 99.5 2.8E-13 9.6E-18 123.4 12.4 81 15-95 14-95 (97)
97 2dgp_A Bruno-like 4, RNA bindi 99.5 1.9E-13 6.5E-18 126.1 11.3 84 13-96 6-98 (106)
98 2jvo_A Nucleolar protein 3; nu 99.5 1.2E-13 4E-18 129.2 9.8 84 11-96 22-105 (108)
99 2jvr_A Nucleolar protein 3; RN 99.5 8.1E-14 2.8E-18 131.5 8.8 88 84-171 15-105 (111)
100 1x4g_A Nucleolysin TIAR; struc 99.5 1.6E-13 5.4E-18 127.7 10.7 81 16-96 21-101 (109)
101 1whx_A Hypothetical protein ri 99.5 8E-14 2.7E-18 130.9 8.7 78 16-93 6-83 (111)
102 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.3E-13 4.3E-18 126.4 9.8 81 16-96 8-94 (102)
103 3lqv_A PRE-mRNA branch site pr 99.5 8.6E-14 2.9E-18 130.5 8.8 80 93-172 4-86 (115)
104 2cqc_A Arginine/serine-rich sp 99.5 1.3E-13 4.4E-18 124.4 9.6 81 13-93 8-94 (95)
105 3s8s_A Histone-lysine N-methyl 99.5 1.1E-13 3.7E-18 130.1 9.4 79 95-173 4-88 (110)
106 2err_A Ataxin-2-binding protei 99.5 1.3E-13 4.5E-18 128.7 9.8 82 13-94 22-107 (109)
107 2lkz_A RNA-binding protein 5; 99.5 7E-14 2.4E-18 128.2 7.8 78 16-93 5-94 (95)
108 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.3E-13 4.5E-18 122.3 9.3 78 94-171 3-86 (87)
109 2cq3_A RNA-binding protein 9; 99.5 3.3E-13 1.1E-17 124.0 12.3 80 94-173 12-95 (103)
110 1x4h_A RNA-binding protein 28; 99.5 2.6E-13 9E-18 126.1 11.7 82 15-96 10-103 (111)
111 4a8x_A RNA-binding protein wit 99.5 2.1E-13 7.3E-18 121.1 10.6 78 18-95 2-86 (88)
112 2lea_A Serine/arginine-rich sp 99.5 5.3E-14 1.8E-18 136.8 7.2 116 57-173 5-129 (135)
113 2dgu_A Heterogeneous nuclear r 99.5 7.7E-13 2.6E-17 121.8 14.7 79 217-298 10-88 (103)
114 2cpj_A Non-POU domain-containi 99.5 1.3E-13 4.5E-18 125.9 9.3 79 94-172 12-90 (99)
115 3md1_A Nuclear and cytoplasmic 99.5 1.7E-13 5.8E-18 120.6 9.7 76 97-172 1-82 (83)
116 2ytc_A PRE-mRNA-splicing facto 99.5 1.3E-13 4.5E-18 122.0 8.9 76 94-169 9-85 (85)
117 1p27_B RNA-binding protein 8A; 99.5 1.4E-13 4.9E-18 127.0 9.4 78 17-94 20-103 (106)
118 2cpf_A RNA binding motif prote 99.5 1.4E-13 4.8E-18 125.2 9.3 80 17-96 2-90 (98)
119 1x4g_A Nucleolysin TIAR; struc 99.5 2.2E-13 7.7E-18 126.7 10.8 80 94-173 22-101 (109)
120 3mdf_A Peptidyl-prolyl CIS-tra 99.5 2.4E-13 8.2E-18 120.1 10.4 76 94-169 4-85 (85)
121 1x5t_A Splicing factor 3B subu 99.5 1.2E-13 4.2E-18 125.0 8.6 80 17-96 2-88 (96)
122 2dgx_A KIAA0430 protein; RRM d 99.5 2.5E-13 8.4E-18 123.8 10.5 79 94-172 6-91 (96)
123 2cqi_A Nucleolysin TIAR; RNA r 99.4 3.4E-13 1.2E-17 123.9 11.6 81 94-174 12-96 (103)
124 2dgu_A Heterogeneous nuclear r 99.4 4.3E-13 1.5E-17 123.5 12.2 79 95-175 9-87 (103)
125 2cpe_A RNA-binding protein EWS 99.4 2.4E-13 8.1E-18 127.1 10.6 84 13-96 8-105 (113)
126 2dgt_A RNA-binding protein 30; 99.4 3.3E-13 1.1E-17 121.6 11.1 81 14-96 4-84 (92)
127 1oo0_B CG8781-PA, drosophila Y 99.4 1.9E-13 6.5E-18 127.1 9.8 80 16-95 22-107 (110)
128 2jrs_A RNA-binding protein 39; 99.4 2.1E-13 7E-18 127.4 9.8 80 15-94 21-106 (108)
129 2cqd_A RNA-binding region cont 99.4 3.6E-13 1.2E-17 126.5 11.5 81 13-94 10-96 (116)
130 1whw_A Hypothetical protein ri 99.4 3.1E-13 1E-17 123.2 10.6 80 94-173 5-90 (99)
131 2la6_A RNA-binding protein FUS 99.4 3.4E-13 1.2E-17 123.1 10.9 78 15-92 8-99 (99)
132 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.8E-13 6.1E-18 137.1 9.8 113 61-173 11-154 (165)
133 2la4_A Nuclear and cytoplasmic 99.4 1.4E-13 4.7E-18 126.1 8.2 77 94-170 24-100 (101)
134 2dgo_A Cytotoxic granule-assoc 99.4 1.2E-12 4.2E-17 122.6 14.9 81 215-296 12-98 (115)
135 2div_A TRNA selenocysteine ass 99.4 2E-13 6.9E-18 124.4 9.3 80 17-96 6-96 (99)
136 2x1f_A MRNA 3'-END-processing 99.4 2.8E-13 9.6E-18 123.0 10.2 78 96-173 1-84 (96)
137 1x4f_A Matrin 3; structural ge 99.4 1.1E-13 3.9E-18 130.8 7.8 80 94-173 22-104 (112)
138 2hvz_A Splicing factor, argini 99.4 1.3E-13 4.5E-18 126.3 7.9 75 98-172 1-76 (101)
139 2xnq_A Nuclear polyadenylated 99.4 4.2E-13 1.4E-17 122.8 11.3 80 13-94 15-95 (97)
140 2cqb_A Peptidyl-prolyl CIS-tra 99.4 3E-13 1E-17 123.9 10.3 80 94-173 9-94 (102)
141 2do0_A HnRNP M, heterogeneous 99.4 6.3E-13 2.2E-17 124.2 12.5 79 94-172 12-95 (114)
142 2dnz_A Probable RNA-binding pr 99.4 4.3E-13 1.5E-17 121.1 11.0 80 94-173 2-87 (95)
143 2ywk_A Putative RNA-binding pr 99.4 1.6E-13 5.6E-18 123.9 8.2 79 14-92 10-93 (95)
144 2dnq_A RNA-binding protein 4B; 99.4 3.9E-13 1.3E-17 120.6 10.6 78 94-173 5-82 (90)
145 1x5p_A Negative elongation fac 99.4 5.7E-13 2E-17 121.4 11.8 81 13-95 8-88 (97)
146 1x5t_A Splicing factor 3B subu 99.4 3.1E-13 1.1E-17 122.3 10.0 79 95-173 3-88 (96)
147 1u6f_A Tcubp1, RNA-binding pro 99.4 3.6E-13 1.2E-17 130.4 11.1 83 14-96 36-124 (139)
148 1wf1_A RNA-binding protein RAL 99.4 4.9E-13 1.7E-17 124.6 11.5 79 16-96 23-102 (110)
149 1nu4_A U1A RNA binding domain; 99.4 2.3E-13 7.8E-18 123.4 9.0 79 17-95 5-90 (97)
150 2cpd_A Apobec-1 stimulating pr 99.4 6E-13 2E-17 121.5 11.8 82 13-96 8-91 (99)
151 2d9p_A Polyadenylate-binding p 99.4 3.5E-13 1.2E-17 123.8 10.2 81 94-174 12-96 (103)
152 2dgx_A KIAA0430 protein; RRM d 99.4 4E-13 1.4E-17 122.4 10.5 79 17-95 6-91 (96)
153 2jvr_A Nucleolar protein 3; RN 99.4 1.9E-13 6.5E-18 129.0 8.5 78 17-94 25-105 (111)
154 2cph_A RNA binding motif prote 99.4 3.7E-13 1.3E-17 124.2 10.3 80 94-173 12-99 (107)
155 2cpx_A Hypothetical protein FL 99.4 4.4E-13 1.5E-17 125.4 10.8 84 13-96 18-107 (115)
156 2dhg_A TRNA selenocysteine ass 99.4 2.6E-13 9E-18 124.7 9.0 82 15-96 4-92 (104)
157 1x4a_A Splicing factor, argini 99.4 6.1E-13 2.1E-17 123.6 11.6 79 94-172 19-100 (109)
158 2kvi_A Nuclear polyadenylated 99.4 3.4E-13 1.2E-17 122.7 9.5 78 16-95 6-84 (96)
159 3p5t_L Cleavage and polyadenyl 99.4 8.8E-14 3E-18 125.1 5.5 76 21-96 2-85 (90)
160 1wi8_A EIF-4B, eukaryotic tran 99.4 5.5E-13 1.9E-17 122.9 11.0 79 16-96 11-96 (104)
161 2dnp_A RNA-binding protein 14; 99.4 5.3E-13 1.8E-17 119.8 10.6 79 15-95 4-82 (90)
162 2cpf_A RNA binding motif prote 99.4 4.2E-13 1.4E-17 122.0 10.1 79 95-173 3-90 (98)
163 3ns6_A Eukaryotic translation 99.4 1.3E-13 4.5E-18 126.8 6.8 77 17-93 3-92 (100)
164 2do4_A Squamous cell carcinoma 99.4 4.9E-13 1.7E-17 122.2 10.5 79 94-172 14-97 (100)
165 2a3j_A U1 small nuclear ribonu 99.4 4.9E-13 1.7E-17 129.1 11.0 79 16-94 25-110 (127)
166 2e5h_A Zinc finger CCHC-type a 99.4 5.4E-13 1.9E-17 120.2 10.6 76 94-169 13-94 (94)
167 2dnh_A Bruno-like 5, RNA bindi 99.4 3.7E-13 1.3E-17 123.9 9.7 81 94-174 12-100 (105)
168 4a8x_A RNA-binding protein wit 99.4 5.5E-13 1.9E-17 118.4 10.4 77 96-172 3-86 (88)
169 2cq0_A Eukaryotic translation 99.4 4.8E-13 1.7E-17 122.9 10.3 80 94-173 12-97 (103)
170 2fc9_A NCL protein; structure 99.4 2.9E-13 9.9E-18 123.9 8.7 81 16-96 11-93 (101)
171 1fjc_A Nucleolin RBD2, protein 99.4 2.1E-13 7.1E-18 123.6 7.6 84 13-96 9-93 (96)
172 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4.8E-13 1.6E-17 133.9 10.9 137 138-296 11-155 (165)
173 1p1t_A Cleavage stimulation fa 99.4 1.2E-13 4.2E-18 126.8 6.0 79 17-95 5-89 (104)
174 1h2v_Z 20 kDa nuclear CAP bind 99.4 5.8E-13 2E-17 131.7 11.2 83 14-96 33-121 (156)
175 3ex7_B RNA-binding protein 8A; 99.4 4.9E-13 1.7E-17 127.3 10.3 81 15-95 17-103 (126)
176 2cpz_A CUG triplet repeat RNA- 99.4 6.2E-13 2.1E-17 124.8 10.8 80 94-173 22-107 (115)
177 3ucg_A Polyadenylate-binding p 99.4 4E-13 1.4E-17 119.8 9.0 76 19-95 5-86 (89)
178 2fy1_A RNA-binding motif prote 99.4 7.4E-13 2.5E-17 125.2 11.4 80 94-173 4-88 (116)
179 2ywk_A Putative RNA-binding pr 99.4 3.6E-13 1.2E-17 121.6 8.8 77 94-170 13-94 (95)
180 2dgs_A DAZ-associated protein 99.4 7.5E-13 2.6E-17 120.8 10.9 79 94-173 7-91 (99)
181 2err_A Ataxin-2-binding protei 99.4 4.5E-13 1.6E-17 125.1 9.6 78 94-171 26-107 (109)
182 2dgt_A RNA-binding protein 30; 99.4 8.2E-13 2.8E-17 119.0 11.0 78 94-173 7-84 (92)
183 2nlw_A Eukaryotic translation 99.4 5.7E-13 2E-17 123.5 10.2 80 14-93 9-99 (105)
184 3ulh_A THO complex subunit 4; 99.4 4.6E-13 1.6E-17 123.7 9.5 78 15-92 24-106 (107)
185 1x5s_A Cold-inducible RNA-bind 99.4 4.9E-13 1.7E-17 122.5 9.6 80 94-173 9-94 (102)
186 2cq4_A RNA binding motif prote 99.4 2.4E-13 8.4E-18 127.3 7.7 78 15-93 20-103 (114)
187 3s7r_A Heterogeneous nuclear r 99.4 3.8E-13 1.3E-17 119.7 8.5 76 15-91 6-87 (87)
188 1whx_A Hypothetical protein ri 99.4 3.1E-13 1E-17 126.9 8.2 77 96-172 9-85 (111)
189 2lkz_A RNA-binding protein 5; 99.4 3.7E-13 1.3E-17 123.4 8.5 77 94-170 6-94 (95)
190 2fc8_A NCL protein; structure 99.4 4.6E-13 1.6E-17 122.7 9.1 83 14-96 9-94 (102)
191 2m2b_A RNA-binding protein 10; 99.4 3.1E-13 1.1E-17 130.2 8.4 82 13-95 16-109 (131)
192 2dnp_A RNA-binding protein 14; 99.4 8.4E-13 2.9E-17 118.4 10.6 77 94-172 6-82 (90)
193 1x5u_A Splicing factor 3B subu 99.4 7.1E-13 2.4E-17 122.1 10.3 80 94-173 12-97 (105)
194 2xnq_A Nuclear polyadenylated 99.4 8.9E-13 3E-17 120.7 10.9 77 93-171 18-95 (97)
195 2dng_A Eukaryotic translation 99.4 6E-13 2E-17 122.4 9.7 80 15-96 10-95 (103)
196 2dgw_A Probable RNA-binding pr 99.4 6.1E-13 2.1E-17 119.5 9.6 79 15-95 5-88 (91)
197 1s79_A Lupus LA protein; RRM, 99.4 5E-13 1.7E-17 124.1 9.2 77 15-92 6-87 (103)
198 3ex7_B RNA-binding protein 8A; 99.4 8.5E-13 2.9E-17 125.7 11.0 81 216-297 20-106 (126)
199 2jvo_A Nucleolar protein 3; nu 99.4 6.5E-13 2.2E-17 124.1 10.0 77 94-172 28-104 (108)
200 2cqh_A IGF-II mRNA-binding pro 99.4 6E-13 2E-17 120.0 9.4 79 94-173 5-85 (93)
201 2cqc_A Arginine/serine-rich sp 99.4 5.4E-13 1.8E-17 120.3 9.1 77 94-170 12-94 (95)
202 2dis_A Unnamed protein product 99.4 6.1E-13 2.1E-17 123.3 9.7 80 17-96 5-94 (109)
203 2cqh_A IGF-II mRNA-binding pro 99.4 2.7E-13 9.2E-18 122.3 7.0 79 17-96 5-85 (93)
204 1u6f_A Tcubp1, RNA-binding pro 99.4 8.5E-13 2.9E-17 127.8 11.0 81 94-174 39-125 (139)
205 2dnm_A SRP46 splicing factor; 99.4 5.4E-13 1.8E-17 122.6 9.1 80 94-173 10-95 (103)
206 1oo0_B CG8781-PA, drosophila Y 99.4 6.6E-13 2.3E-17 123.4 9.8 79 94-172 23-107 (110)
207 1wg5_A Heterogeneous nuclear r 99.4 8.4E-13 2.9E-17 122.1 10.4 80 14-94 9-94 (104)
208 2do0_A HnRNP M, heterogeneous 99.4 2.7E-12 9.3E-17 119.9 14.0 78 218-296 15-97 (114)
209 2rs2_A Musashi-1, RNA-binding 99.4 4.7E-13 1.6E-17 125.1 8.6 83 13-96 18-106 (109)
210 2dh8_A DAZ-associated protein 99.4 3.2E-13 1.1E-17 124.5 7.4 83 12-95 8-96 (105)
211 2cqp_A RNA-binding protein 12; 99.4 3.6E-13 1.2E-17 122.5 7.6 78 16-93 11-94 (98)
212 1wf1_A RNA-binding protein RAL 99.4 5.7E-13 1.9E-17 124.2 9.1 89 82-172 6-101 (110)
213 2dgv_A HnRNP M, heterogeneous 99.4 4.9E-13 1.7E-17 120.1 8.4 79 94-172 5-87 (92)
214 2fy1_A RNA-binding motif prote 99.4 1.6E-12 5.6E-17 122.9 12.2 77 219-296 8-89 (116)
215 2j76_E EIF-4B, EIF4B, eukaryot 99.4 3.5E-13 1.2E-17 123.7 7.3 78 15-94 14-98 (100)
216 1p27_B RNA-binding protein 8A; 99.4 5.6E-13 1.9E-17 123.0 8.7 78 95-172 21-104 (106)
217 2la6_A RNA-binding protein FUS 99.4 6.7E-13 2.3E-17 121.2 9.0 77 93-169 9-99 (99)
218 2kt5_A RNA and export factor-b 99.4 1E-12 3.4E-17 125.1 10.6 80 16-95 31-115 (124)
219 3ulh_A THO complex subunit 4; 99.4 8.5E-13 2.9E-17 121.9 9.8 77 93-169 25-106 (107)
220 1x5o_A RNA binding motif, sing 99.4 1.6E-12 5.5E-17 121.6 11.8 82 13-94 18-112 (114)
221 1x4b_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 126.8 7.1 80 16-96 23-108 (116)
222 1x4c_A Splicing factor, argini 99.4 4.4E-12 1.5E-16 118.0 14.6 75 218-294 15-94 (108)
223 1wi8_A EIF-4B, eukaryotic tran 99.4 9.8E-13 3.4E-17 121.2 10.0 79 93-173 11-96 (104)
224 2cqd_A RNA-binding region cont 99.4 3.6E-12 1.2E-16 119.7 13.9 79 218-298 17-101 (116)
225 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.3E-12 4.6E-17 125.9 11.2 79 13-91 56-140 (140)
226 1x4h_A RNA-binding protein 28; 99.4 1.2E-12 4.3E-17 121.5 10.6 80 94-173 12-103 (111)
227 2khc_A Testis-specific RNP-typ 99.4 6E-13 2E-17 125.3 8.5 76 94-169 37-118 (118)
228 2lea_A Serine/arginine-rich sp 99.4 5.7E-13 1.9E-17 129.5 8.6 84 13-96 40-129 (135)
229 2cq2_A Hypothetical protein LO 99.4 7.3E-13 2.5E-17 125.6 8.9 79 94-172 22-107 (114)
230 2div_A TRNA selenocysteine ass 99.4 7.4E-13 2.5E-17 120.6 8.6 80 93-172 5-95 (99)
231 1x5p_A Negative elongation fac 99.4 4.4E-12 1.5E-16 115.5 13.7 76 217-295 14-89 (97)
232 1x4e_A RNA binding motif, sing 99.4 2.5E-13 8.4E-18 120.4 5.2 76 17-92 2-83 (85)
233 2cpe_A RNA-binding protein EWS 99.4 1.3E-12 4.4E-17 122.1 10.3 80 94-173 12-105 (113)
234 1fj7_A Nucleolin RBD1, protein 99.4 1.2E-12 4.2E-17 119.8 9.9 80 16-96 13-97 (101)
235 2cpd_A Apobec-1 stimulating pr 99.4 4.7E-12 1.6E-16 115.6 13.8 77 215-294 12-90 (99)
236 2cqg_A TDP-43, TAR DNA-binding 99.4 1.8E-12 6E-17 119.1 10.9 82 13-96 8-95 (103)
237 1wg1_A KIAA1579 protein, homol 99.4 6E-13 2.1E-17 119.2 7.5 75 18-93 3-77 (88)
238 1nu4_A U1A RNA binding domain; 99.4 1.3E-12 4.5E-17 118.4 9.9 80 94-173 5-91 (97)
239 2ek1_A RNA-binding protein 12; 99.4 2.9E-13 9.9E-18 122.3 5.3 76 17-92 12-93 (95)
240 2mss_A Protein (musashi1); RNA 99.4 6.3E-13 2.1E-17 115.0 7.2 69 22-91 1-75 (75)
241 2jrs_A RNA-binding protein 39; 99.4 8.9E-13 3E-17 123.1 8.7 81 92-172 21-107 (108)
242 1wel_A RNA-binding protein 12; 99.4 3.2E-13 1.1E-17 128.8 5.8 78 14-92 19-102 (124)
243 3pgw_S U1-70K; protein-RNA com 99.4 3.8E-13 1.3E-17 155.1 7.5 78 95-172 100-183 (437)
244 2dgp_A Bruno-like 4, RNA bindi 99.4 1.1E-12 3.7E-17 121.1 9.2 81 93-173 9-98 (106)
245 1wg1_A KIAA1579 protein, homol 99.4 1.4E-12 4.6E-17 116.9 9.5 76 95-171 3-78 (88)
246 2krb_A Eukaryotic translation 99.4 6E-13 2E-17 117.2 7.0 69 20-88 1-80 (81)
247 2cpi_A CCR4-NOT transcription 99.4 1E-12 3.5E-17 123.0 9.0 78 95-172 13-102 (111)
248 2cq2_A Hypothetical protein LO 99.4 1.4E-12 4.8E-17 123.6 9.8 79 15-93 20-105 (114)
249 1x4e_A RNA binding motif, sing 99.4 3.6E-13 1.2E-17 119.3 5.4 76 94-169 2-83 (85)
250 3ucg_A Polyadenylate-binding p 99.4 1.3E-12 4.5E-17 116.4 9.0 75 96-171 5-85 (89)
251 2cpi_A CCR4-NOT transcription 99.4 1E-12 3.5E-17 122.9 8.7 82 14-95 9-102 (111)
252 3n9u_C Cleavage and polyadenyl 99.4 7.8E-13 2.7E-17 131.9 8.3 75 18-92 53-135 (156)
253 1p1t_A Cleavage stimulation fa 99.4 6.6E-13 2.3E-17 121.9 7.1 79 96-174 7-91 (104)
254 3pgw_S U1-70K; protein-RNA com 99.4 9.3E-13 3.2E-17 151.8 9.9 80 216-296 100-185 (437)
255 1uaw_A Mouse-musashi-1; RNP-ty 99.4 5E-13 1.7E-17 115.8 5.7 70 21-91 1-76 (77)
256 2e5j_A Methenyltetrahydrofolat 99.4 1.3E-12 4.4E-17 119.0 8.6 78 94-172 16-95 (97)
257 2dis_A Unnamed protein product 99.4 1.8E-12 6E-17 120.2 9.7 80 94-173 5-94 (109)
258 2cqp_A RNA-binding protein 12; 99.4 8.9E-13 3E-17 119.9 7.4 78 94-171 12-95 (98)
259 2jwn_A Embryonic polyadenylate 99.4 3.5E-13 1.2E-17 128.0 4.9 77 18-95 34-116 (124)
260 3ns6_A Eukaryotic translation 99.3 8.2E-13 2.8E-17 121.5 7.0 78 95-172 4-94 (100)
261 3p5t_L Cleavage and polyadenyl 99.3 4.1E-13 1.4E-17 120.7 4.9 75 98-172 2-84 (90)
262 2kxn_B Transformer-2 protein h 99.3 1.1E-12 3.7E-17 126.6 7.9 79 94-172 43-127 (129)
263 2hzc_A Splicing factor U2AF 65 99.3 1.4E-12 4.7E-17 115.7 7.9 73 94-167 3-86 (87)
264 2cpy_A RNA-binding protein 12; 99.3 8.4E-13 2.9E-17 124.1 6.8 77 15-92 10-92 (114)
265 2ek1_A RNA-binding protein 12; 99.3 8.7E-13 3E-17 119.1 6.6 76 95-170 13-94 (95)
266 2kvi_A Nuclear polyadenylated 99.3 2.4E-12 8.3E-17 117.1 9.4 78 216-296 8-86 (96)
267 2hzc_A Splicing factor U2AF 65 99.3 1.7E-12 5.7E-17 115.2 8.0 73 17-90 3-86 (87)
268 2ki2_A SS-DNA binding protein 99.3 4.2E-13 1.4E-17 120.2 4.1 73 21-94 2-80 (90)
269 1wez_A HnRNP H', FTP-3, hetero 99.3 1.5E-12 5.3E-17 120.4 8.0 79 15-95 10-93 (102)
270 2a3j_A U1 small nuclear ribonu 99.3 2E-12 7E-17 124.8 9.2 80 94-173 26-112 (127)
271 3egn_A RNA-binding protein 40; 99.3 1.2E-12 4E-17 127.7 7.5 79 17-95 42-131 (143)
272 3beg_B Splicing factor, argini 99.3 1.8E-12 6.2E-17 122.3 8.6 76 95-171 14-94 (115)
273 2bz2_A Negative elongation fac 99.3 3E-12 1E-16 122.2 10.2 81 13-95 32-112 (121)
274 2dgw_A Probable RNA-binding pr 99.3 3.3E-12 1.1E-16 114.7 9.8 78 93-172 6-88 (91)
275 2e5g_A U6 snRNA-specific termi 99.3 3.1E-12 1.1E-16 115.8 9.6 79 16-95 4-83 (94)
276 2db1_A Heterogeneous nuclear r 99.3 1.4E-12 4.6E-17 123.8 7.5 76 16-92 13-96 (118)
277 2fc9_A NCL protein; structure 99.3 4.7E-12 1.6E-16 115.8 10.8 77 94-173 12-93 (101)
278 2dng_A Eukaryotic translation 99.3 5.4E-12 1.8E-16 116.0 11.1 79 93-173 11-95 (103)
279 3s7r_A Heterogeneous nuclear r 99.3 3.3E-12 1.1E-16 113.6 9.2 75 93-168 7-87 (87)
280 2e44_A Insulin-like growth fac 99.3 5.8E-12 2E-16 114.0 11.0 78 17-94 12-92 (96)
281 2hgl_A HNRPF protein, heteroge 99.3 1.8E-12 6.1E-17 126.6 8.0 77 15-92 39-123 (136)
282 2j76_E EIF-4B, EIF4B, eukaryot 99.3 1.4E-12 4.7E-17 119.7 6.7 76 94-171 16-98 (100)
283 2e44_A Insulin-like growth fac 99.3 3E-12 1E-16 115.9 8.7 78 94-171 12-92 (96)
284 2cpy_A RNA-binding protein 12; 99.3 1.6E-12 5.5E-17 122.2 7.1 79 94-173 12-96 (114)
285 2lmi_A GRSF-1, G-rich sequence 99.3 1.4E-12 4.8E-17 121.3 6.6 77 15-92 6-90 (107)
286 1s79_A Lupus LA protein; RRM, 99.3 1.8E-12 6.2E-17 120.4 7.2 77 94-171 8-89 (103)
287 1h2v_Z 20 kDa nuclear CAP bind 99.3 6.5E-12 2.2E-16 124.2 11.6 79 216-295 37-121 (156)
288 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 3.5E-12 1.2E-16 123.0 9.4 75 94-168 60-140 (140)
289 2kt5_A RNA and export factor-b 99.3 4.2E-12 1.5E-16 120.7 9.8 79 94-172 32-115 (124)
290 2rs2_A Musashi-1, RNA-binding 99.3 4.5E-12 1.5E-16 118.4 9.7 78 94-172 22-105 (109)
291 1sjr_A Polypyrimidine tract-bi 99.3 4.6E-12 1.6E-16 127.3 10.3 78 17-94 43-124 (164)
292 3n9u_C Cleavage and polyadenyl 99.3 3.1E-12 1.1E-16 127.5 8.9 78 95-172 53-138 (156)
293 2nlw_A Eukaryotic translation 99.3 3.1E-12 1.1E-16 118.5 8.2 77 95-171 13-100 (105)
294 2dh8_A DAZ-associated protein 99.3 2.2E-12 7.4E-17 119.0 7.1 79 94-173 13-97 (105)
295 2cq4_A RNA binding motif prote 99.3 3.5E-12 1.2E-16 119.4 8.6 76 97-173 25-106 (114)
296 2e5i_A Heterogeneous nuclear r 99.3 5.2E-12 1.8E-16 121.5 9.9 75 98-172 26-103 (124)
297 3zzy_A Polypyrimidine tract-bi 99.3 5.9E-12 2E-16 122.0 10.0 78 95-172 26-107 (130)
298 2dhg_A TRNA selenocysteine ass 99.3 9.6E-12 3.3E-16 114.3 10.8 78 218-296 9-93 (104)
299 2hgl_A HNRPF protein, heteroge 99.3 2.1E-12 7.3E-17 126.1 6.7 114 57-172 2-126 (136)
300 2jwn_A Embryonic polyadenylate 99.3 3.7E-12 1.3E-16 120.9 8.2 75 97-172 36-116 (124)
301 2dnn_A RNA-binding protein 12; 99.3 2.9E-12 9.8E-17 120.5 7.3 74 17-92 13-91 (109)
302 1x5o_A RNA binding motif, sing 99.3 6.8E-12 2.3E-16 117.3 9.7 78 94-171 22-112 (114)
303 1x4b_A Heterogeneous nuclear r 99.3 6.8E-12 2.3E-16 117.8 9.7 76 97-173 27-108 (116)
304 2hgn_A Heterogeneous nuclear r 99.3 1E-12 3.5E-17 128.8 4.2 114 56-172 1-124 (139)
305 1uaw_A Mouse-musashi-1; RNP-ty 99.3 2.4E-12 8.4E-17 111.5 6.2 70 98-168 1-76 (77)
306 1iqt_A AUF1, heterogeneous nuc 99.3 2E-12 7E-17 111.6 5.6 69 22-91 1-75 (75)
307 3zzy_A Polypyrimidine tract-bi 99.3 6.9E-12 2.3E-16 121.6 9.8 77 18-94 26-106 (130)
308 2mss_A Protein (musashi1); RNA 99.3 2.1E-12 7.2E-17 111.6 5.6 69 99-168 1-75 (75)
309 2e5g_A U6 snRNA-specific termi 99.3 7.9E-12 2.7E-16 113.1 9.6 78 94-172 5-83 (94)
310 2lcw_A RNA-binding protein FUS 99.0 2.8E-13 9.6E-18 127.4 0.0 80 16-95 3-96 (116)
311 1wg5_A Heterogeneous nuclear r 99.3 5.7E-12 1.9E-16 116.5 8.7 78 94-172 12-95 (104)
312 2cpx_A Hypothetical protein FL 99.3 6.3E-12 2.2E-16 117.6 9.1 80 94-173 22-107 (115)
313 2db1_A Heterogeneous nuclear r 99.3 4.4E-12 1.5E-16 120.2 8.1 78 94-172 14-99 (118)
314 1sjr_A Polypyrimidine tract-bi 99.3 5.1E-12 1.8E-16 126.9 8.8 79 94-172 43-125 (164)
315 2e5i_A Heterogeneous nuclear r 99.3 2.6E-11 9E-16 116.6 13.4 78 216-294 21-103 (124)
316 2diu_A KIAA0430 protein; struc 99.3 7.8E-12 2.7E-16 114.2 9.2 75 17-95 5-85 (96)
317 2ki2_A SS-DNA binding protein 99.3 1.3E-12 4.5E-17 116.9 3.9 74 98-172 2-81 (90)
318 2m2b_A RNA-binding protein 10; 99.3 3.3E-12 1.1E-16 123.0 6.9 78 94-172 20-109 (131)
319 2f3j_A RNA and export factor b 99.3 8.9E-12 3E-16 126.7 10.2 77 17-93 85-166 (177)
320 1fjc_A Nucleolin RBD2, protein 99.3 5.3E-12 1.8E-16 114.3 7.6 79 94-172 13-92 (96)
321 2krb_A Eukaryotic translation 99.3 2.5E-12 8.7E-17 113.2 5.3 69 97-165 1-80 (81)
322 3q2s_C Cleavage and polyadenyl 99.3 3.6E-12 1.2E-16 134.8 7.4 74 19-92 67-148 (229)
323 1fj7_A Nucleolin RBD1, protein 99.3 2.5E-12 8.7E-17 117.6 5.3 76 96-173 16-97 (101)
324 3beg_B Splicing factor, argini 99.3 1.3E-11 4.6E-16 116.3 10.3 72 218-292 17-93 (115)
325 2bz2_A Negative elongation fac 99.3 1E-11 3.6E-16 118.5 9.5 77 94-172 36-112 (121)
326 3d2w_A TAR DNA-binding protein 99.3 1.4E-11 4.9E-16 111.0 9.6 76 16-95 7-85 (89)
327 2cqg_A TDP-43, TAR DNA-binding 99.3 3E-11 1E-15 110.9 11.8 78 94-173 12-95 (103)
328 2hgm_A HNRPF protein, heteroge 99.3 8.1E-12 2.8E-16 120.5 8.3 76 15-92 37-119 (126)
329 1wel_A RNA-binding protein 12; 99.2 3.3E-12 1.1E-16 121.7 5.0 79 93-172 21-105 (124)
330 2fc8_A NCL protein; structure 99.2 2.6E-11 9E-16 110.9 10.8 77 94-173 12-94 (102)
331 1wez_A HnRNP H', FTP-3, hetero 99.2 8.2E-12 2.8E-16 115.5 7.4 77 94-172 12-93 (102)
332 2hgn_A Heterogeneous nuclear r 99.2 3.5E-12 1.2E-16 125.0 5.2 79 16-96 42-125 (139)
333 3d2w_A TAR DNA-binding protein 99.2 1.6E-11 5.5E-16 110.7 9.0 76 93-172 7-85 (89)
334 1wf0_A TDP-43, TAR DNA-binding 99.2 5.8E-12 2E-16 112.5 5.9 77 18-96 3-80 (88)
335 2dha_A FLJ20171 protein; RRM d 99.2 4.7E-12 1.6E-16 121.6 5.0 74 17-91 20-102 (123)
336 2dnn_A RNA-binding protein 12; 99.2 2.3E-11 8E-16 114.2 9.4 74 97-172 16-94 (109)
337 3u1l_A PRE-mRNA-splicing facto 99.2 1.8E-11 6.3E-16 130.2 9.5 78 17-94 131-229 (240)
338 3egn_A RNA-binding protein 40; 99.2 1.6E-11 5.6E-16 119.5 8.5 81 93-173 41-132 (143)
339 2lmi_A GRSF-1, G-rich sequence 99.2 7.1E-12 2.4E-16 116.5 5.6 78 94-172 8-93 (107)
340 1wf0_A TDP-43, TAR DNA-binding 99.2 1.3E-11 4.5E-16 110.2 7.1 76 95-172 3-79 (88)
341 3q2s_C Cleavage and polyadenyl 99.2 9.3E-12 3.2E-16 131.6 6.7 76 96-171 67-150 (229)
342 1iqt_A AUF1, heterogeneous nuc 99.2 6E-12 2.1E-16 108.6 4.3 69 99-168 1-75 (75)
343 2diu_A KIAA0430 protein; struc 99.2 2.4E-11 8E-16 111.0 8.3 74 96-173 7-86 (96)
344 3u1l_A PRE-mRNA-splicing facto 99.2 1.6E-11 5.4E-16 130.7 8.2 80 94-173 131-231 (240)
345 2xs2_A Deleted in azoospermia- 99.2 5.9E-12 2E-16 115.4 4.1 76 17-94 6-86 (102)
346 2pe8_A Splicing factor 45; RRM 99.2 4.8E-11 1.6E-15 111.3 10.1 77 216-292 6-93 (105)
347 2dnl_A Cytoplasmic polyadenyla 99.2 3.7E-11 1.3E-15 112.8 9.2 83 17-103 5-96 (114)
348 2lcw_A RNA-binding protein FUS 98.8 1.9E-12 6.5E-17 121.7 0.0 80 94-173 4-97 (116)
349 2f3j_A RNA and export factor b 99.2 3E-11 1E-15 122.8 8.5 78 95-172 86-168 (177)
350 2dha_A FLJ20171 protein; RRM d 99.2 2.1E-11 7.3E-16 117.0 5.9 78 94-172 20-106 (123)
351 2xs2_A Deleted in azoospermia- 99.2 1.6E-11 5.3E-16 112.6 4.4 76 95-172 7-87 (102)
352 2voo_A Lupus LA protein; RNA-b 99.1 1.5E-10 5.1E-15 119.2 12.1 106 65-171 63-187 (193)
353 2dit_A HIV TAT specific factor 99.1 2.7E-10 9.2E-15 106.7 12.6 81 214-294 11-103 (112)
354 3v4m_A Splicing factor U2AF 65 99.1 1.4E-10 4.7E-15 108.2 9.7 79 215-293 2-97 (105)
355 2hgm_A HNRPF protein, heteroge 99.1 3.5E-11 1.2E-15 116.0 5.3 76 94-171 39-121 (126)
356 2pe8_A Splicing factor 45; RRM 99.1 2.1E-10 7.3E-15 106.9 10.3 77 95-171 6-94 (105)
357 2dit_A HIV TAT specific factor 99.1 2E-10 6.9E-15 107.6 10.1 81 15-95 10-103 (112)
358 2dnl_A Cytoplasmic polyadenyla 99.1 1.6E-10 5.3E-15 108.6 7.8 74 94-170 5-87 (114)
359 2voo_A Lupus LA protein; RNA-b 99.0 2.9E-10 9.8E-15 117.1 8.9 74 19-93 108-186 (193)
360 3ue2_A Poly(U)-binding-splicin 99.0 4.4E-10 1.5E-14 107.1 8.8 76 217-292 19-108 (118)
361 3s6e_A RNA-binding protein 39; 99.0 5.5E-10 1.9E-14 105.8 8.5 77 216-292 5-92 (114)
362 3v4m_A Splicing factor U2AF 65 99.0 1.1E-09 3.7E-14 102.1 9.4 77 95-171 3-97 (105)
363 3tht_A Alkylated DNA repair pr 99.0 7E-10 2.4E-14 123.9 9.4 75 17-91 15-96 (345)
364 3tht_A Alkylated DNA repair pr 99.0 7.8E-10 2.7E-14 123.5 9.5 76 94-169 15-97 (345)
365 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.4E-09 4.8E-14 100.7 9.4 63 230-294 28-91 (100)
366 2j8a_A Histone-lysine N-methyl 99.0 3.3E-10 1.1E-14 109.2 5.3 72 21-92 3-94 (136)
367 2j8a_A Histone-lysine N-methyl 98.9 8.2E-10 2.8E-14 106.4 6.8 74 98-171 3-96 (136)
368 2d9o_A DNAJ (HSP40) homolog, s 98.9 6.1E-09 2.1E-13 96.4 12.2 77 17-95 7-91 (100)
369 3ue2_A Poly(U)-binding-splicin 98.9 2.1E-09 7E-14 102.5 9.2 76 96-171 19-109 (118)
370 1jmt_A Splicing factor U2AF 35 98.9 1.4E-09 4.8E-14 101.1 7.7 57 234-290 41-103 (104)
371 1jmt_A Splicing factor U2AF 35 98.9 9.7E-10 3.3E-14 102.2 4.8 68 101-168 19-103 (104)
372 3s6e_A RNA-binding protein 39; 98.9 7E-09 2.4E-13 98.2 10.0 78 94-171 4-93 (114)
373 1owx_A Lupus LA protein, SS-B, 98.6 8.2E-08 2.8E-12 91.8 8.7 77 95-171 16-96 (121)
374 1owx_A Lupus LA protein, SS-B, 98.6 2.4E-07 8.2E-12 88.6 10.3 78 14-91 12-93 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.5 3.1E-07 1.1E-11 83.2 8.7 57 234-293 30-86 (91)
376 3dxb_A Thioredoxin N-terminall 98.5 2E-07 6.7E-12 97.1 7.6 62 231-292 141-212 (222)
377 2dnr_A Synaptojanin-1; RRM dom 98.4 7.5E-07 2.6E-11 80.7 8.3 57 112-171 30-86 (91)
378 1ufw_A Synaptojanin 2; RNP dom 98.2 1.4E-06 4.9E-11 79.3 5.6 56 234-292 39-94 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.1 2.7E-06 9.4E-11 77.5 6.3 72 95-169 13-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.1 1.1E-05 3.7E-10 83.9 9.9 63 109-171 141-213 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.0 2.7E-05 9.3E-10 72.5 9.3 75 94-168 18-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.9 5.4E-05 1.8E-09 70.5 10.2 72 216-289 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.5 0.00053 1.8E-08 63.3 11.0 90 17-110 5-99 (104)
384 1ow1_A Smart/HDAC1 associated 97.5 8E-05 2.7E-09 76.0 5.6 110 507-616 38-172 (195)
385 1wey_A Calcipressin 1; structu 97.2 0.0012 4E-08 61.2 9.5 79 215-293 3-84 (104)
386 1wey_A Calcipressin 1; structu 96.8 0.0024 8.3E-08 59.1 7.0 75 96-170 4-83 (104)
387 1uw4_A UPF3X; nonsense mediate 96.3 0.0079 2.7E-07 54.5 7.2 63 21-83 2-72 (91)
388 1wwh_A Nucleoporin 35, nucleop 96.2 0.015 5.1E-07 55.2 8.8 71 215-289 22-93 (119)
389 2dhx_A Poly (ADP-ribose) polym 96.2 0.035 1.2E-06 51.3 10.7 74 96-172 7-85 (104)
390 1wwh_A Nucleoporin 35, nucleop 96.1 0.014 4.6E-07 55.5 8.0 73 17-91 21-94 (119)
391 1uw4_A UPF3X; nonsense mediate 95.3 0.062 2.1E-06 48.7 8.6 73 98-170 2-87 (91)
392 1whv_A Poly(A)-specific ribonu 94.7 0.14 4.7E-06 46.9 9.0 61 14-77 10-70 (100)
393 3p3d_A Nucleoporin 53; structu 94.6 0.026 8.9E-07 54.3 4.5 73 216-292 6-98 (132)
394 2l08_A Regulator of nonsense t 94.3 0.048 1.6E-06 49.9 5.2 66 18-83 7-80 (97)
395 1whv_A Poly(A)-specific ribonu 93.9 0.098 3.4E-06 47.8 6.4 55 97-154 16-70 (100)
396 3p3d_A Nucleoporin 53; structu 93.5 0.076 2.6E-06 51.1 5.1 71 19-91 6-96 (132)
397 3ctr_A Poly(A)-specific ribonu 93.1 0.087 3E-06 48.3 4.7 54 98-154 7-60 (101)
398 2l08_A Regulator of nonsense t 92.9 0.26 9.1E-06 45.0 7.6 74 96-169 8-94 (97)
399 3pq1_A Poly(A) RNA polymerase; 92.4 0.06 2E-06 62.2 3.4 54 19-73 52-106 (464)
400 3ctr_A Poly(A)-specific ribonu 91.1 0.2 6.9E-06 45.9 4.6 53 21-77 7-60 (101)
401 3pq1_A Poly(A) RNA polymerase; 88.5 0.23 7.8E-06 57.4 3.5 55 96-151 52-107 (464)
402 3d45_A Poly(A)-specific ribonu 67.0 13 0.00044 43.4 8.8 58 18-78 438-495 (507)
403 3d45_A Poly(A)-specific ribonu 61.3 13 0.00045 43.3 7.5 56 97-155 440-495 (507)
404 3dxt_A JMJC domain-containing 46.3 12 0.0004 41.7 3.6 55 550-613 4-61 (354)
405 2g0c_A ATP-dependent RNA helic 44.0 39 0.0013 28.5 5.8 68 221-291 3-75 (76)
406 2ox0_A JMJC domain-containing 33.1 19 0.00066 40.4 2.6 46 557-611 30-77 (381)
407 2f06_A Conserved hypothetical 31.7 2E+02 0.0067 26.8 9.3 104 34-152 20-130 (144)
408 3opt_A DNA damage-responsive t 22.8 28 0.00096 39.0 1.5 41 563-613 14-56 (373)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.1e-38 Score=339.48 Aligned_cols=236 Identities=19% Similarity=0.291 Sum_probs=210.1
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCCC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP 96 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k~ 96 (954)
..++++|||+|||.++|+++|+++|+.|| |.+|..++++|||||+|.+.++|.+|++.+++..|.|+.|.|.++. .
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---~ 94 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---T 94 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC---C
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC---C
Confidence 45789999999999999999999999999 9999999999999999999999999999999999999999999963 6
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.++|||+|||+++|+++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|++.|++..++|+.|.|.++..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 689999999999999999999999999999999876 36899999999999999999999999999999999876
Q ss_pred CcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCC-CHHHHHHHHhhcCCEEEE
Q 002198 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQM-DEQMLHNAMILFGEIERI 249 (954)
Q Consensus 171 k~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~v-tEedLre~Fs~fG~V~~V 249 (954)
..... .....+.+++++++ ..+ ++++|+++|+.||.|.++
T Consensus 175 ~~~~~--------------------------------------~~~~~~~l~v~nlp-~~~~~~~~l~~~f~~~G~i~~v 215 (284)
T 3smz_A 175 GQLTP--------------------------------------ALLHSRCLCVDRLP-PGFNDVDALCRALSAVHSPTFC 215 (284)
T ss_dssp GGCCT--------------------------------------TTTSCSEEEEECCC-TTCCCHHHHHHHTCSSSCCSEE
T ss_pred CCCCc--------------------------------------ccCCccEEEEecCC-cccCCHHHHHHHhhCCCCeEEE
Confidence 43211 11223445555555 344 999999999999999999
Q ss_pred EEeCC-----CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCC
Q 002198 250 KSYPS-----RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 295 (954)
Q Consensus 250 kI~~s-----rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~ 295 (954)
++..+ +|+|||+|.+.++|.+|++.|||..|+|++|.|.|++++..
T Consensus 216 ~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 216 QLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred EEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 98753 79999999999999999999999999999999999976553
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.6e-37 Score=334.15 Aligned_cols=239 Identities=18% Similarity=0.268 Sum_probs=201.9
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS----SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gk----skG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
.+..+++++|||+|||.++|+++|+++|+.||.|.+|.... ++|||||+|.+.++|.+|+ ++++..|.|+.|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEE
Confidence 34467899999999999999999999999999999988433 5899999999999999999 699999999999999
Q ss_pred ecCCCCCCCeEEEeCCCccCCHHHHHhhhcccc-ceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEE
Q 002198 90 FARPAKPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQL 163 (954)
Q Consensus 90 ~A~p~k~srkLfVgNLP~~vTeedL~elFskfG-~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I 163 (954)
++ ..++|||+|||+++++++|+++|+.|| .|.+|.+..+ +|+|||+|.+.++|.+|++.|++..+.|+.|
T Consensus 114 ~~----~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 189 (292)
T 2ghp_A 114 HL----TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL 189 (292)
T ss_dssp EC----CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred EC----CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 87 588999999999999999999999999 9999999874 5899999999999999999999999999999
Q ss_pred EEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCC-CCHHHHHHHHhh
Q 002198 164 RVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQ-MDEQMLHNAMIL 242 (954)
Q Consensus 164 ~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~-vtEedLre~Fs~ 242 (954)
.|.++......... .......+.++|++++ .. +++++|+++|+.
T Consensus 190 ~v~~a~~~~~~~~~----------------------------------~~~~~~~~~l~v~nlp-~~~~t~~~l~~~F~~ 234 (292)
T 2ghp_A 190 VTKVSNPLEKSKRT----------------------------------DSATLEGREIMIRNLS-TELLDENLLRESFEG 234 (292)
T ss_dssp EEEECCCC-------------------------------------------CCTTTEEEEEEEC-TTTCCHHHHHHHHGG
T ss_pred EEEECCCCcccccc----------------------------------cccCCCCceEEEECCC-cccCCHHHHHHHHhc
Confidence 99998765422100 0012234455555555 46 899999999999
Q ss_pred cCCEEEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 243 FGEIERIKSYP-------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 243 fG~V~~VkI~~-------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
||.|.+|++.. .+|||||+|.+.++|.+|+ .|||..|+|++|.|.|++++
T Consensus 235 ~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 235 FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999853 3689999999999999999 99999999999999999765
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=8.9e-28 Score=250.12 Aligned_cols=157 Identities=26% Similarity=0.465 Sum_probs=143.7
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..++++|||+|||.++||++|+++|++||.|.+|. .++++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45789999999999999999999999999999887 356789999999999999999999999999999999999
Q ss_pred cCCCC-----CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCe
Q 002198 91 ARPAK-----PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGE 161 (954)
Q Consensus 91 A~p~k-----~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr 161 (954)
+.... ...+|||+||++++|+++|+++|+.||.|++|.|+++ +|+|||+|.+.++|.+|++.|||..|+|+
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 87543 4679999999999999999999999999999999976 57899999999999999999999999999
Q ss_pred EEEEEEccCCcc
Q 002198 162 QLRVDFLRSQPS 173 (954)
Q Consensus 162 ~I~V~~a~sk~~ 173 (954)
.|+|.++..+..
T Consensus 172 ~i~V~~a~~~~~ 183 (213)
T 4f02_A 172 KVFVGRFKSRKE 183 (213)
T ss_dssp ECEEEECCCHHH
T ss_pred EEEEEEcCCCcc
Confidence 999999987644
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.1e-27 Score=231.01 Aligned_cols=149 Identities=27% Similarity=0.480 Sum_probs=139.0
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC-
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA- 94 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~- 94 (954)
++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999998883 557899999999999999999999999999999999998643
Q ss_pred ----CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 95 ----KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 95 ----k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
...++|||+|||.++|+++|+++|+.||.|.++.+..+ +|+|||+|.+.++|.+|++.|||..++|+.|+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 34679999999999999999999999999999999977 46899999999999999999999999999999
Q ss_pred EEEcc
Q 002198 165 VDFLR 169 (954)
Q Consensus 165 V~~a~ 169 (954)
|.|++
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99985
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=9.7e-27 Score=230.17 Aligned_cols=150 Identities=32% Similarity=0.525 Sum_probs=139.9
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
++++|||+|||.++|+++|+++|+.||.|.+|. .++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 579999999999999999999999999999988 24467999999999999999999999999999999999998
Q ss_pred CCC---CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCC--e
Q 002198 93 PAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGG--E 161 (954)
Q Consensus 93 p~k---~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~G--r 161 (954)
+.. ..++|||+|||.++++++|+++|++||.|..+.+.+++ |+|||+|.+.++|.+|++.|||..+.| +
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 161 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 161 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe
Confidence 644 56899999999999999999999999999999999874 789999999999999999999999987 9
Q ss_pred EEEEEEc
Q 002198 162 QLRVDFL 168 (954)
Q Consensus 162 ~I~V~~a 168 (954)
.|+|.|+
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 9999885
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=1.6e-26 Score=227.71 Aligned_cols=150 Identities=29% Similarity=0.572 Sum_probs=138.2
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
++++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999998873 3456999999999999999999999999999999999998
Q ss_pred CCC---CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeE-
Q 002198 93 PAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQ- 162 (954)
Q Consensus 93 p~k---~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~- 162 (954)
+.. ..++|||+|||..+++++|+++|++||.|.++.+..+ +|+|||+|.+.++|.+|++.|||..+.|+.
T Consensus 81 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 81 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCcc
Confidence 654 4689999999999999999999999999999999887 478999999999999999999999999965
Q ss_pred -EEEEEc
Q 002198 163 -LRVDFL 168 (954)
Q Consensus 163 -I~V~~a 168 (954)
|+|.||
T Consensus 161 ~i~v~~A 167 (167)
T 1fxl_A 161 PITVKFA 167 (167)
T ss_dssp CCEEEEC
T ss_pred ceEEEeC
Confidence 888875
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=2.1e-26 Score=237.31 Aligned_cols=155 Identities=23% Similarity=0.461 Sum_probs=142.3
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
.++++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.+++..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45789999999999999999999999999999883 457999999999999999999999999999999999987
Q ss_pred CCC--------------CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHH
Q 002198 92 RPA--------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALK 151 (954)
Q Consensus 92 ~p~--------------k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe 151 (954)
... ...++|||+||+.++|+++|+++|++||.|++|.+.++ +|+|||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 643 34589999999999999999999999999999999987 5789999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCc
Q 002198 152 NINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 152 ~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
.||+..|+|+.|+|.++....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999998764
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=9.1e-27 Score=231.61 Aligned_cols=151 Identities=26% Similarity=0.522 Sum_probs=141.8
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhcc----C-------CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKF----G-------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~y----G-------~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
+++++|||+|||.++|+++|+++|+.| | .|.++..++++|||||+|.+.++|.+|+ .+++..|.|+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 467999999999999999999999999 7 7888889999999999999999999999 999999999999
Q ss_pred EEEecCCC---CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCce
Q 002198 87 KIEFARPA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQ 157 (954)
Q Consensus 87 ~V~~A~p~---k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~ 157 (954)
+|.++... ...++|||+|||.++|+++|+++|++||.|.++.+.++ +|+|||+|.+.++|.+|++.|||..
T Consensus 81 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 81 KIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp EEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred eecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 99998754 34689999999999999999999999999999999988 4789999999999999999999999
Q ss_pred eCCeEEEEEEcc
Q 002198 158 IGGEQLRVDFLR 169 (954)
Q Consensus 158 i~Gr~I~V~~a~ 169 (954)
++|+.|+|.++.
T Consensus 161 ~~g~~l~V~~As 172 (172)
T 2g4b_A 161 LGDKKLLVQRAS 172 (172)
T ss_dssp ETTEECEEEECC
T ss_pred ECCeEEEEEeCC
Confidence 999999999873
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=1.3e-26 Score=235.74 Aligned_cols=154 Identities=26% Similarity=0.513 Sum_probs=142.8
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhcc----C-------CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKF----G-------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~y----G-------~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
..+++|||+|||.++|+++|+++|+.| | .|.++..++++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 468999999999999999999999999 6 7888889999999999999999999999 899999999999
Q ss_pred EEEecCCC-----------------------CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeE
Q 002198 87 KIEFARPA-----------------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAF 137 (954)
Q Consensus 87 ~V~~A~p~-----------------------k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AF 137 (954)
+|.++.+. ...++|||+|||.++++++|+++|++||.|.+|.+.++ +|+||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 99998643 35689999999999999999999999999999999987 57899
Q ss_pred EecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 138 VEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 138 VeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
|+|.+.++|.+|++.|||..|+|+.|+|.++..+.
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999987754
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=3.7e-26 Score=246.36 Aligned_cols=154 Identities=25% Similarity=0.507 Sum_probs=143.6
Q ss_pred CCCCCCEEEEccCCcCCcHHHHH----HHHhccCCeeEEE---ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLK----ELFGKFGALDKVT---TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~----e~Fs~yG~I~sV~---~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
+.+++++|||+|||.++|+++|+ ++|+.||.|.+|. .++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 46789999999999999999976 9999999999998 5678999999999999999999999999999999999
Q ss_pred EecCCCC-------------------------------------------------------------------------
Q 002198 89 EFARPAK------------------------------------------------------------------------- 95 (954)
Q Consensus 89 ~~A~p~k------------------------------------------------------------------------- 95 (954)
.|++...
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9986422
Q ss_pred -----------------------------------------CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC-
Q 002198 96 -----------------------------------------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG- 133 (954)
Q Consensus 96 -----------------------------------------~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr- 133 (954)
.+++|||+||+.++|+++|+++|++||.|.+|.+..++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 34679999999999999999999999999999999887
Q ss_pred CeeEEecCCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 002198 134 NTAFVEYSRLEDAAEALKNINGRQIG-GEQLRVDFLR 169 (954)
Q Consensus 134 G~AFVeF~t~EdA~~AIe~Lng~~i~-Gr~I~V~~a~ 169 (954)
|+|||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999999999999999 9999999986
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=2e-26 Score=233.93 Aligned_cols=160 Identities=26% Similarity=0.428 Sum_probs=139.0
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
...+..+.++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|+ .+++..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH-HTCSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHH-hcCCCEECCEEe
Confidence 3445678999999999999999999999999999998872 456899999999999999999 558999999999
Q ss_pred EEEecCCCC---------CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHH
Q 002198 87 KIEFARPAK---------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALK 151 (954)
Q Consensus 87 ~V~~A~p~k---------~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe 151 (954)
.|.++.+.. ..++|||+|||+++|+++|+++|+.||.|..|.++.+ +|+|||+|.+.++|.+|++
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 999986432 3589999999999999999999999999999999987 4689999999999999997
Q ss_pred HhCCceeCCeEEEEEEccCCccc
Q 002198 152 NINGRQIGGEQLRVDFLRSQPSR 174 (954)
Q Consensus 152 ~Lng~~i~Gr~I~V~~a~sk~~~ 174 (954)
. ++..|+|+.|.|.++..+...
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp C-SCCEETTEECEEEECC-----
T ss_pred h-CCcEECCEEEEEEecCChhHh
Confidence 6 799999999999999877543
No 12
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=4.4e-26 Score=237.30 Aligned_cols=162 Identities=28% Similarity=0.430 Sum_probs=136.9
Q ss_pred CCCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 92 RPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 92 ~p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
.|..+.++|||+|||+++|+++|+++|++||.|++|+|+++ +|+|||+|.+.++|.+|++.+++..+.|+.|+|
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 34567889999999999999999999999999999999987 368999999999999999999999999999999
Q ss_pred EEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCC
Q 002198 166 DFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGE 245 (954)
Q Consensus 166 ~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~ 245 (954)
.++....... .....+|+|.+++. .+++++|+++|+.||.
T Consensus 90 ~~~~~~~~~~--------------------------------------~~~~~~l~v~nl~~--~~t~~~l~~~F~~~G~ 129 (213)
T 4f02_A 90 MWSQRDPSLR--------------------------------------KSGVGNIFIKNLDK--SIDNKALYDTFSAFGN 129 (213)
T ss_dssp EECCCCTHHH--------------------------------------HHCTTEEEEESCCT--TCCHHHHHHHHGGGSC
T ss_pred cccccccccc--------------------------------------ccccccceECCccc--ccHHHHHHHHHhhcCC
Confidence 9876543221 01123455555544 5999999999999999
Q ss_pred EEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 246 IERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 246 V~~VkI~~----srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
|++|+|.. ++|||||+|.+.++|.+|++.|||..|+|++|.|.|++.+
T Consensus 130 i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 130 ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred eEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 99999864 4789999999999999999999999999999999999754
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=4.7e-26 Score=226.42 Aligned_cols=152 Identities=26% Similarity=0.468 Sum_probs=137.0
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEec--------CCCcEEEEEeCCHHHHHHHHHHhcCCccC---Ccce
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY--------SSRSFAFVYFKRVEDAKAAKDALQGSDFR---GNPI 86 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~g--------kskG~AFVeF~s~edA~~AL~~Lng~~L~---Gr~I 86 (954)
+++++|||+|||.++|+++|+++|++||.|.+|... +++|||||+|.+.++|.+|++.+++..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 367899999999999999999999999999988721 67899999999999999999999998775 6788
Q ss_pred EEEecCCCC----CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCce
Q 002198 87 KIEFARPAK----PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQ 157 (954)
Q Consensus 87 ~V~~A~p~k----~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~ 157 (954)
.+.++.+.. ..++|||+|||+++|+++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 81 QMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred EEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 888876433 5689999999999999999999999999999999987 5789999999999999999999987
Q ss_pred eC---CeEEEEEEcc
Q 002198 158 IG---GEQLRVDFLR 169 (954)
Q Consensus 158 i~---Gr~I~V~~a~ 169 (954)
+. ++.|+|.|+.
T Consensus 161 ~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 161 TMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCTTCSSCCEEEECC
T ss_pred ccCCCCCCeEEEecC
Confidence 75 4999999874
No 14
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=1.3e-25 Score=236.41 Aligned_cols=157 Identities=30% Similarity=0.501 Sum_probs=143.8
Q ss_pred CCCCCCCEEEEccCCc-CCcHHHHHHHHhccCCeeEEEecCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 15 KEAPPSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSS-RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~-svTE~dL~e~Fs~yG~I~sV~~gks-kG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
....++++|||+|||. ++|+++|+++|+.||.|.+|...+. +|||||+|.+.++|.+|++.|++..|.|+.|+|.+++
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3457899999999999 9999999999999999999985444 6999999999999999999999999999999999986
Q ss_pred CC--------------------------------------CCCCeEEEeCCCccCCHHHHHhhhcccc-ceeEEEEee-c
Q 002198 93 PA--------------------------------------KPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLK-D 132 (954)
Q Consensus 93 p~--------------------------------------k~srkLfVgNLP~~vTeedL~elFskfG-~Ie~I~Ilr-d 132 (954)
+. .++++|||+|||.++++++|+++|+.|| .|.+|.++. +
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 188 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 188 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC
Confidence 42 1257899999999999999999999999 999999955 7
Q ss_pred CCeeEEecCCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 002198 133 GNTAFVEYSRLEDAAEALKNINGRQIG-GEQLRVDFLRSQ 171 (954)
Q Consensus 133 rG~AFVeF~t~EdA~~AIe~Lng~~i~-Gr~I~V~~a~sk 171 (954)
+|+|||+|.+.++|.+|++.|+|..+. |+.|+|.|++.+
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 899999999999999999999999999 999999998753
No 15
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-25 Score=219.25 Aligned_cols=155 Identities=30% Similarity=0.461 Sum_probs=135.8
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC-----CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr-----G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
++|||+|||.++|+++|+++|+.||.|.+|.+.+++ |+|||+|.+.++|.+|++.|++..+.|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 589999999999999999999999999999998774 789999999999999999999999999999999976543
Q ss_pred ccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEe
Q 002198 173 SRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY 252 (954)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~ 252 (954)
.. ...+...+++++++ ..+++++|+++|+.||.|.++.+.
T Consensus 81 ~~---------------------------------------~~~~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~~i~ 120 (166)
T 3md3_A 81 QS---------------------------------------SSDDTFNLFVGDLN-VNVDDETLRNAFKDFPSYLSGHVM 120 (166)
T ss_dssp CC---------------------------------------CCTTCEEEEEESCC-TTCCHHHHHHHHTTSTTEEEEEEE
T ss_pred CC---------------------------------------CCCCCceEEECCCC-CCCCHHHHHHHHhccCCeeEEEEE
Confidence 10 11234456666555 359999999999999999999986
Q ss_pred C------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 253 P------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 253 ~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
. ++|||||+|.+.++|.+|++.|||..|+|++|+|.|++.
T Consensus 121 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 121 WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 3 368999999999999999999999999999999999863
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=2.3e-25 Score=222.64 Aligned_cols=155 Identities=27% Similarity=0.404 Sum_probs=139.4
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCC-----eeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGA-----LDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~-----I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
.+..+.++|||+|||.++|+++|+++|..||. |.+...++++|||||+|.+.++|.+|+ +|++..|.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 45778999999999999999999999999985 445568889999999999999999999 699999999999999
Q ss_pred ecCCCC-----CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEe--ecCCeeEEecCCHHHHHHHHHHhCCceeCCeE
Q 002198 90 FARPAK-----PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL--KDGNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (954)
Q Consensus 90 ~A~p~k-----~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Il--rdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~ 162 (954)
++.+.. ..++|||+|||.++|+++|+++|+.||.|..+ .. ..+|+|||+|.+.++|.+|++.|||..|+|+.
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 997533 46899999999999999999999999998877 11 23689999999999999999999999999999
Q ss_pred EEEEEccCC
Q 002198 163 LRVDFLRSQ 171 (954)
Q Consensus 163 I~V~~a~sk 171 (954)
|+|.|+..+
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999998764
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=1.6e-25 Score=228.87 Aligned_cols=153 Identities=31% Similarity=0.517 Sum_probs=140.9
Q ss_pred CCCEEEEccCCc-CCcHHHHHHHHhccCCeeEEEecCC-CcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC--
Q 002198 19 PSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSS-RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA-- 94 (954)
Q Consensus 19 ~s~tLfV~NLP~-svTE~dL~e~Fs~yG~I~sV~~gks-kG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~-- 94 (954)
.+++|||+|||. ++|+++|+++|+.||.|.+|..... +|||||+|.+.++|.+|++.|++..|.|+.|+|.++++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999985443 699999999999999999999999999999999998632
Q ss_pred ------------------------------------CCCCeEEEeCCCccCCHHHHHhhhcccc-ceeEEEEee-cCCee
Q 002198 95 ------------------------------------KPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLK-DGNTA 136 (954)
Q Consensus 95 ------------------------------------k~srkLfVgNLP~~vTeedL~elFskfG-~Ie~I~Ilr-drG~A 136 (954)
.++++|||+|||..+++++|+++|+.|| .|.+|.+.. ++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 2267899999999999999999999999 999999965 68999
Q ss_pred EEecCCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 002198 137 FVEYSRLEDAAEALKNINGRQIG-GEQLRVDFLRSQ 171 (954)
Q Consensus 137 FVeF~t~EdA~~AIe~Lng~~i~-Gr~I~V~~a~sk 171 (954)
||+|.+.++|.+|++.|||..++ |+.|+|.|++.+
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999998753
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=4.3e-26 Score=225.62 Aligned_cols=151 Identities=25% Similarity=0.445 Sum_probs=137.5
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
+++++|||+|||.++|+++|+++|+.||.|.+|. .++++|||||+|.+.++|.+|++ ++..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 3679999999999999999999999999999998 35678999999999999999996 367899999999998
Q ss_pred CCCC---CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeE
Q 002198 92 RPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (954)
Q Consensus 92 ~p~k---~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~ 162 (954)
.+.. ..++|||+|||+++|+++|+++|+.||.|.++.+..+ +|+|||+|.+.++|.+|++ +++..++|+.
T Consensus 79 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 79 IPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp CCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred cchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 6532 4679999999999999999999999999999999877 3699999999999999997 8999999999
Q ss_pred EEEEEccCC
Q 002198 163 LRVDFLRSQ 171 (954)
Q Consensus 163 I~V~~a~sk 171 (954)
|+|.++..+
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999998764
No 19
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=7.2e-25 Score=216.73 Aligned_cols=153 Identities=22% Similarity=0.364 Sum_probs=134.1
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
++++|||+|||.++++++|+++|+.||.|.+|.+++++ |+|||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999998763 799999999999999999999999999999999886
Q ss_pred CCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEE
Q 002198 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERI 249 (954)
Q Consensus 170 sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~V 249 (954)
.... ....+.+++++++ ..+++++|+++|++||.|.++
T Consensus 82 ~~~~-----------------------------------------~~~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~ 119 (168)
T 1b7f_A 82 PGGE-----------------------------------------SIKDTNLYVTNLP-RTITDDQLDTIFGKYGSIVQK 119 (168)
T ss_dssp CCSS-----------------------------------------TTTTCEEEEESCC-TTCCHHHHHHHHTSSSCEEEE
T ss_pred CCcc-----------------------------------------cCCCCCEEEeCCC-CCCCHHHHHHhhhcCCcEEEE
Confidence 5421 1122345555555 359999999999999999999
Q ss_pred EEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCC--ceEEEEEe
Q 002198 250 KSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFS 290 (954)
Q Consensus 250 kI~~s------rG~AFVeF~s~EdA~kAie~LNG~~f~G--r~I~Vs~A 290 (954)
++..+ +|||||+|.+.++|.+|++.|||..|.| ++|+|.||
T Consensus 120 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 120 NILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 98643 4899999999999999999999999988 99999986
No 20
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=6.7e-25 Score=216.04 Aligned_cols=152 Identities=26% Similarity=0.435 Sum_probs=132.6
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.++|||+|||+++++++|+++|+.||.|.+|.+++++ |+|||+|.+.++|.+|++.|++..+.|+.|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999886 7999999999999999999999999999999998865
Q ss_pred CcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEE
Q 002198 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK 250 (954)
Q Consensus 171 k~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~Vk 250 (954)
.... ....++++.+++. .+++++|+++|+.||.|.+++
T Consensus 82 ~~~~----------------------------------------~~~~~l~v~nl~~--~~t~~~l~~~f~~~G~i~~~~ 119 (167)
T 1fxl_A 82 SSAS----------------------------------------IRDANLYVSGLPK--TMTQKELEQLFSQYGRIITSR 119 (167)
T ss_dssp CCGG----------------------------------------GTTCEEEEESCCT--TCCHHHHHHHHGGGSCEEEEE
T ss_pred Cccc----------------------------------------CCCCcEEECCCCC--cCCHHHHHHHHHhcCCEeEEE
Confidence 4211 1123445444444 599999999999999999999
Q ss_pred EeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCce--EEEEEe
Q 002198 251 SYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPR--ITIMFS 290 (954)
Q Consensus 251 I~~s------rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~--I~Vs~A 290 (954)
+..+ +|||||+|.+.++|.+|++.|||..|.|+. |+|.||
T Consensus 120 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 120 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 8643 689999999999999999999999999965 888886
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=1e-24 Score=229.43 Aligned_cols=193 Identities=20% Similarity=0.290 Sum_probs=145.7
Q ss_pred CCCCCeEEEeCCCc-cCCHHHHHhhhccccceeEEEEeecC-CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 94 AKPSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKDG-NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 94 ~k~srkLfVgNLP~-~vTeedL~elFskfG~Ie~I~Ilrdr-G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
...+++|||+|||+ ++++++|+++|+.||.|.+|.+++++ |+|||+|.+.++|.+|++.|++..|.|+.|+|.++...
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 45689999999999 99999999999999999999999884 99999999999999999999999999999999998765
Q ss_pred cccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcC-CEEEEE
Q 002198 172 PSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG-EIERIK 250 (954)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG-~V~~Vk 250 (954)
.................. ...... ...............++++++|++++ ..+++++|+++|+.|| .|.+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~l~V~nlp-~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDY---GNSPLH---RFKKPGSKNFQNIFPPSATLHLSNIP-PSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp CCCCCCSSSSTTTTEEEC---TTCSSC---CCCSTTSGGGTTCCCSCSEEEEECCC-TTCCHHHHHHHHHTTSCCEEEEE
T ss_pred cccCcccccccccccccc---ccCccc---ccCCccccccccCCCCCCEEEEeCCC-ccCCHHHHHHHHHHcCCCeeEEE
Confidence 321111000000000000 000000 00000000011123345666666666 3699999999999999 999999
Q ss_pred Ee-CCCcEEEEEeCCHHHHHHHHHHhCCCeeC-CceEEEEEecCC
Q 002198 251 SY-PSRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSSE 293 (954)
Q Consensus 251 I~-~srG~AFVeF~s~EdA~kAie~LNG~~f~-Gr~I~Vs~Ak~e 293 (954)
+. .++|||||+|.+.++|.+|++.|||..|+ |++|+|.|++++
T Consensus 184 i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 95 48999999999999999999999999999 999999999764
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=3.9e-25 Score=230.17 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=135.1
Q ss_pred CCCCEEEEccCC-cCCcHHHHHHHHhccCCeeEEEec-CCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC-
Q 002198 18 PPSSNLWVGNLS-ADTTDADLKELFGKFGALDKVTTY-SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA- 94 (954)
Q Consensus 18 ~~s~tLfV~NLP-~svTE~dL~e~Fs~yG~I~sV~~g-kskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~- 94 (954)
.++++|||+||| .++|+++|+++|+.||.|.+|+.. ..+|||||+|.+.++|.+|++.|++..|.|+.|+|.+++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 468999999999 899999999999999999999854 46899999999999999999999999999999999998521
Q ss_pred ---------------------------------------CCCCeEEEeCCCccCCHHHHHhhhccccce--eEEEEeec-
Q 002198 95 ---------------------------------------KPSKHLWVGGISQTVSKEELEEGFLKFGNI--EDFKFLKD- 132 (954)
Q Consensus 95 ---------------------------------------k~srkLfVgNLP~~vTeedL~elFskfG~I--e~I~Ilrd- 132 (954)
.++++|||+|||+++|+++|+++|+.||.| .++++..+
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 123579999999999999999999999998 89999876
Q ss_pred ---CCeeEEecCCHHHHHHHHHHhCCceeCCe----EEEEEEc
Q 002198 133 ---GNTAFVEYSRLEDAAEALKNINGRQIGGE----QLRVDFL 168 (954)
Q Consensus 133 ---rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr----~I~V~~a 168 (954)
+|+|||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 37899999999999999999999999875 5666653
No 23
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=7.9e-25 Score=223.66 Aligned_cols=191 Identities=20% Similarity=0.274 Sum_probs=145.9
Q ss_pred CCCeEEEeCCCc-cCCHHHHHhhhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002198 96 PSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (954)
Q Consensus 96 ~srkLfVgNLP~-~vTeedL~elFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~ 173 (954)
.+++|||+|||+ ++++++|+++|+.||.|.+|.+.++ +|+|||+|.+.++|.+|++.|++..+.|+.|+|.++.....
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999999988 59999999999999999999999999999999999886542
Q ss_pred cccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcC-CEEEEEEe
Q 002198 174 RREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG-EIERIKSY 252 (954)
Q Consensus 174 ~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG-~V~~VkI~ 252 (954)
................. ..... ...............+++++++++++ ..+++++|+++|+.|| .|.+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~---~~~~~---r~~~~~~~~~~~~~~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYG---NSPLH---RFKKPGSKNFQNIFPPSATLHLSNIP-PSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp CCSSSSSSSSSCEEESS---CCCTT---SSSSCCCCCCSCCCCCCCEEEECCCC-TTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred CCCCcCCcccccccccc---CCchh---hccCccccccccCCCCccEEEEeCCC-CCCCHHHHHHHHHHcCCCceEEEEE
Confidence 21110000000000000 00000 00000111111123456777777777 4699999999999999 99999995
Q ss_pred C-CCcEEEEEeCCHHHHHHHHHHhCCCeeC-CceEEEEEecCC
Q 002198 253 P-SRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSSE 293 (954)
Q Consensus 253 ~-srG~AFVeF~s~EdA~kAie~LNG~~f~-Gr~I~Vs~Ak~e 293 (954)
+ ++|+|||+|.+.++|.+|++.|||..|+ |++|+|.|+++.
T Consensus 155 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp STTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4 7899999999999999999999999999 999999999764
No 24
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.92 E-value=1.6e-24 Score=233.56 Aligned_cols=198 Identities=22% Similarity=0.426 Sum_probs=144.7
Q ss_pred CCCCCeEEEeCCCccCCHHHHH----hhhccccceeEEEEeec---CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELE----EGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~----elFskfG~Ie~I~Ilrd---rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
...+++|||+|||+++|+++|+ ++|+.||.|.+|.+.++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4578999999999999999976 89999999999998873 6899999999999999999999999999999999
Q ss_pred EccCCcccccCCCCCCCCCC-------------------------CCccCCCCCC-----------------------CC
Q 002198 167 FLRSQPSRREQWPNSHDARD-------------------------GPIIGRGTGF-----------------------SD 198 (954)
Q Consensus 167 ~a~sk~~~~~~~~~~~~~r~-------------------------~~~~g~~~g~-----------------------~~ 198 (954)
+++..........+....+. ....+...+. ..
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 99765431100000000000 0000000000 00
Q ss_pred Cccc---c-------------------ccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCC-
Q 002198 199 NHSA---Y-------------------KRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSR- 255 (954)
Q Consensus 199 ~~s~---~-------------------~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~sr- 255 (954)
.... . .............++++|+|++++ ..+++++|+++|++||.|++|++.+++
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~-~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLP-EETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCC-CcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0000 0 000000011233456667777776 469999999999999999999998776
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeeC-CceEEEEEecC
Q 002198 256 NYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSS 292 (954)
Q Consensus 256 G~AFVeF~s~EdA~kAie~LNG~~f~-Gr~I~Vs~Ak~ 292 (954)
|||||+|.+.++|.+|++.|||..|. |+.|+|.|++.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999963
No 25
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=7.1e-25 Score=235.30 Aligned_cols=157 Identities=30% Similarity=0.467 Sum_probs=145.1
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
.++....+++|||+|||.++|+++|+++|+.||.|.+|...+++|||||+|.+.++|.+|++.+++..|.|+.|+|.++.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 44456788999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhC-CceeC---CeEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNIN-GRQIG---GEQL 163 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Ln-g~~i~---Gr~I 163 (954)
..++|||+|||+.+|+++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|++.|| +..+. ++.|
T Consensus 95 ---~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 95 ---HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp ---CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred ---cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 5789999999999999999999999999999999987 6789999999999999999994 55554 8999
Q ss_pred EEEEccCCc
Q 002198 164 RVDFLRSQP 172 (954)
Q Consensus 164 ~V~~a~sk~ 172 (954)
.|.++....
T Consensus 172 ~v~~~~~~~ 180 (261)
T 3sde_A 172 IVEPMEQFD 180 (261)
T ss_dssp EEEECCCEE
T ss_pred EEeeccccC
Confidence 999988654
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=1.6e-24 Score=220.31 Aligned_cols=176 Identities=18% Similarity=0.333 Sum_probs=139.8
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccc----c-------ceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKF----G-------NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskf----G-------~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
..++|||+|||+++|+++|+++|+.| | .|.++.+.+++|+|||+|.+.++|.+|+ .||+..|.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 57899999999999999999999999 5 7888888889999999999999999999 8999999999999
Q ss_pred EEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcC
Q 002198 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG 244 (954)
Q Consensus 165 V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG 244 (954)
|.++............... ..+.... .......+.++|++++ ..+++++|+++|++||
T Consensus 82 v~~~~~~~~~~~~~~~~~~--------------------~~~~~~~-~~~~~~~~~l~v~nl~-~~~~~~~l~~~f~~~G 139 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSV--------------------YVPGVVS-TVVPDSAHKLFIGGLP-NYLNDDQVKELLTSFG 139 (198)
T ss_dssp EECCCCCCCCCCSSSCSSC--------------------CCTTSSC-CCSSCCCCEEEEECCC-TTCCHHHHHHHHHTBS
T ss_pred EeCCCCCCCCCCCcCCCcC--------------------CCCCCcc-CCCCCCCCEEEEeCCC-CCCCHHHHHHHHHHcC
Confidence 9988765322111000000 0000001 1122334555565655 3599999999999999
Q ss_pred CEEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 245 EIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 245 ~V~~VkI~~s------rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
.|.+|++..+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.|++.+.
T Consensus 140 ~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 140 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999998744 7899999999999999999999999999999999997654
No 27
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.92 E-value=2.6e-25 Score=229.11 Aligned_cols=170 Identities=18% Similarity=0.303 Sum_probs=139.5
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
..++|||+|||.++|+++|+++|+.||.|.+|.++++ +|+|||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4679999999999999999999999999999999875 5899999999999999999999999999999998776
Q ss_pred CCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEE
Q 002198 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERI 249 (954)
Q Consensus 170 sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~V 249 (954)
......... ... .......+.++|++++ ..+++++|+++|++||.|++|
T Consensus 107 ~~~~~~~~~----------------------~~~--------~~~~~~~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~v 155 (216)
T 2qfj_A 107 NIGQAQPII----------------------DQL--------AEEARAFNRIYVASVH-QDLSDDDIKSVFEAFGKIKSA 155 (216)
T ss_dssp CCGGGHHHH----------------------HHH--------HHHHTTSCEEEEECCC-TTCCHHHHHHHHTTSSCEEEE
T ss_pred Cccccchhh----------------------hhh--------hcccCCCcEEEEeCCC-CcCCHHHHHHHHhccCCeeEE
Confidence 543211000 000 0011223455565555 359999999999999999999
Q ss_pred EEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCC
Q 002198 250 KSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 250 kI~~s------rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
++..+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.|++.+..+
T Consensus 156 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 156 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred EEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99744 789999999999999999999999999999999999876543
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.92 E-value=8.1e-25 Score=217.49 Aligned_cols=153 Identities=20% Similarity=0.411 Sum_probs=133.7
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccc----c-------ceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKF----G-------NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskf----G-------~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
+.++|||+|||+++|+++|+++|++| | .|.++.+.+++|+|||+|.+.++|.+|+ .+++..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 57899999999999999999999999 6 8889999999999999999999999999 8999999999999
Q ss_pred EEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcC
Q 002198 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG 244 (954)
Q Consensus 165 V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG 244 (954)
|.++..... .....++++.|++. .+++++|+++|++||
T Consensus 82 v~~~~~~~~----------------------------------------~~~~~~l~v~nlp~--~~t~~~l~~~f~~~G 119 (172)
T 2g4b_A 82 IRRPHDYQP----------------------------------------LPGAHKLFIGGLPN--YLNDDQVKELLTSFG 119 (172)
T ss_dssp EECCSSCCC----------------------------------------CTTTTCEEEECCCT--TCCHHHHHHHHHTTS
T ss_pred ecCCcccCC----------------------------------------CCCCCEEEEEcCCC--cCCHHHHHHHHHhcC
Confidence 987644321 01134455544444 599999999999999
Q ss_pred CEEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEec
Q 002198 245 EIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 291 (954)
Q Consensus 245 ~V~~VkI~~s------rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak 291 (954)
.|.++.+..+ +|||||+|.+.++|.+|++.|||..|+|++|.|.||.
T Consensus 120 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 120 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999998644 6899999999999999999999999999999999984
No 29
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=2.1e-24 Score=232.97 Aligned_cols=157 Identities=24% Similarity=0.376 Sum_probs=144.6
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
...++|||+|||.++|+++|+++|+.||.|.+|. .+.++|||||+|.+.++|.+|++.+++..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4568999999999999999999999999999886 3456899999999999999999999999999999999999
Q ss_pred CCCC------CCCeEEEeCCCccC-CHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 92 RPAK------PSKHLWVGGISQTV-SKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 92 ~p~k------~srkLfVgNLP~~v-TeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
.+.. ..++|||+|||.++ |+++|+++|+.||.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..++
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 7533 57899999999996 99999999999999999999987 688999999999999999999999999
Q ss_pred CeEEEEEEccCCccc
Q 002198 160 GEQLRVDFLRSQPSR 174 (954)
Q Consensus 160 Gr~I~V~~a~sk~~~ 174 (954)
|+.|+|.|+..+..+
T Consensus 253 g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 253 GSHLRVSFCAPGPPG 267 (284)
T ss_dssp TEECEEEECCSSSCH
T ss_pred CeEEEEEEecCCCcc
Confidence 999999999877543
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=4.2e-24 Score=222.36 Aligned_cols=190 Identities=18% Similarity=0.215 Sum_probs=138.2
Q ss_pred CCCCeEEEeCCC-ccCCHHHHHhhhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 95 KPSKHLWVGGIS-QTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 95 k~srkLfVgNLP-~~vTeedL~elFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
.++++|||+||+ +.+|+++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.+++.+.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 357899999999 89999999999999999999999986 6999999999999999999999999999999999987654
Q ss_pred ccccCCCCCCCCCCCCccCCCCC-CCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCE--EEE
Q 002198 173 SRREQWPNSHDARDGPIIGRGTG-FSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI--ERI 249 (954)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~g~~~g-~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V--~~V 249 (954)
....... .............+ ...... ............+++.|+|+|++ .+++|++|+++|+.||.| .++
T Consensus 82 ~~p~~~~--~~~~~~~~~~~~~~~~~~r~~---~~~~~~~~~~~~p~~~l~v~NLp-~~~t~~~L~~~F~~~G~v~~~~v 155 (205)
T 3tyt_A 82 IMPGQSY--GLEDGSCSYKDFSESRNNRFS---TPEQAAKNRIQHPSNVLHFFNAP-LEVTEENFFEICDELGVKRPTSV 155 (205)
T ss_dssp CCCCSCC--BCTTSCBSEEECTTCTTCSCS---SHHHHTTSCCCCCCSEEEEEEEC-TTCCHHHHHHHHHHHTCCCCSEE
T ss_pred cCCCccc--ccccCCccccccCCCcccccc---CcccccccccCCCcceEEEeCCC-CCCCHHHHHHHHHhcCCcceEEE
Confidence 2110000 00000000000000 000000 00000001122445566666666 369999999999999999 899
Q ss_pred EEeCC----CcEEEEEeCCHHHHHHHHHHhCCCeeCCc----eEEEEEe
Q 002198 250 KSYPS----RNYSFVEFRSVDEARRAKEGLQGRLFNDP----RITIMFS 290 (954)
Q Consensus 250 kI~~s----rG~AFVeF~s~EdA~kAie~LNG~~f~Gr----~I~Vs~A 290 (954)
+++.+ +|+|||+|.+.++|.+|++.|||..|.|+ ++.|.|+
T Consensus 156 ~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 98754 48999999999999999999999999987 5776664
No 31
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.91 E-value=4.4e-24 Score=216.60 Aligned_cols=165 Identities=20% Similarity=0.333 Sum_probs=132.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++|+++|+++|+.||.|.+|.++++ +|+|||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 346789999999999999999999999999999999986 46899999999999999965 89999999999999
Q ss_pred ccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEE
Q 002198 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 247 (954)
Q Consensus 168 a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~ 247 (954)
+........ .......+.++|++++ ..+++++|+++|+.||.|+
T Consensus 89 ~~~~~~~~~-----------------------------------~~~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 89 AVSREDSQR-----------------------------------PGAHLTVKKIFVGGIK-EDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp CCC----------------------------------------------CCSEEEEECCT-TTCCHHHHHHHHTTTSCEE
T ss_pred ccCcccccc-----------------------------------cccCCCcceEEEeCCC-CCCCHHHHHHHHhcCCCeE
Confidence 865432110 0011223445555555 3599999999999999999
Q ss_pred EEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCC
Q 002198 248 RIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 248 ~VkI~~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
.|++.. .+|||||+|.+.++|.+|++. +|..|+|+.|.|.|+.++...
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 999864 368999999999999999986 899999999999999776644
No 32
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.91 E-value=4.8e-24 Score=211.87 Aligned_cols=155 Identities=19% Similarity=0.342 Sum_probs=130.1
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec--------CCeeEEecCCHHHHHHHHHHhCCceeC---CeEEE
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--------GNTAFVEYSRLEDAAEALKNINGRQIG---GEQLR 164 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd--------rG~AFVeF~t~EdA~~AIe~Lng~~i~---Gr~I~ 164 (954)
..++|||+|||+++|+++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999999855 468999999999999999999998775 57777
Q ss_pred EEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcC
Q 002198 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG 244 (954)
Q Consensus 165 V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG 244 (954)
+.++...... ....+.++|++++ ..+++++|+++|++||
T Consensus 82 ~~~~~~~~~~----------------------------------------~~~~~~l~v~nl~-~~~t~~~l~~~F~~~G 120 (175)
T 3nmr_A 82 MKPADSEKNN----------------------------------------AVEDRKLFIGMIS-KKCTENDIRVMFSSFG 120 (175)
T ss_dssp EEECGGGCCS----------------------------------------CGGGSEEEEESCC-TTCCHHHHHHHHGGGS
T ss_pred Eccccccccc----------------------------------------cCCCCeEEEcCCC-CcCCHHHHHHHHHhCC
Confidence 7776543210 1122345555555 3599999999999999
Q ss_pred CEEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCCeeC---CceEEEEEec
Q 002198 245 EIERIKSYPS-----RNYSFVEFRSVDEARRAKEGLQGRLFN---DPRITIMFSS 291 (954)
Q Consensus 245 ~V~~VkI~~s-----rG~AFVeF~s~EdA~kAie~LNG~~f~---Gr~I~Vs~Ak 291 (954)
.|+++++..+ +|||||+|.+.++|.+|++.|||..+. |++|.|.|+.
T Consensus 121 ~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 121 QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999754 789999999999999999999998876 4999999983
No 33
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.91 E-value=1.1e-23 Score=228.02 Aligned_cols=152 Identities=21% Similarity=0.432 Sum_probs=139.0
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccC-CeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFG-ALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG-~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
..++|||+|||.++|+++|+++|+.|| .|.+|.. +.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 589999999999999999999999999 9999883 4578999999999999999999999999999999999987
Q ss_pred CCC----------CCCeEEEeCCCcc-CCHHHHHhhhccccceeEEEEeec-------CCeeEEecCCHHHHHHHHHHhC
Q 002198 93 PAK----------PSKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNIN 154 (954)
Q Consensus 93 p~k----------~srkLfVgNLP~~-vTeedL~elFskfG~Ie~I~Ilrd-------rG~AFVeF~t~EdA~~AIe~Ln 154 (954)
+.. ..++|||+|||.+ +|+++|+++|+.||.|..|.+.++ +|+|||+|.+.++|.+|+ .||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 533 3579999999999 999999999999999999999875 468999999999999999 999
Q ss_pred CceeCCeEEEEEEccCC
Q 002198 155 GRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 155 g~~i~Gr~I~V~~a~sk 171 (954)
|..|+|+.|+|.|+..+
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999998765
No 34
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.90 E-value=4.6e-24 Score=211.07 Aligned_cols=153 Identities=20% Similarity=0.347 Sum_probs=131.3
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
++++|||+|||+++|+++|+++|+.||.|.+|.++++ +|+|||+|.+.++|.+|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999999887 47999999999999999984 678999999998875
Q ss_pred CCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEE
Q 002198 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERI 249 (954)
Q Consensus 170 sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~V 249 (954)
...... ..+.+++++++ ..+++++|+++|+.||.|.++
T Consensus 80 ~~~~~~-----------------------------------------~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~~ 117 (167)
T 2cjk_A 80 PRDEQD-----------------------------------------KTGKIFVGGIG-PDVRPKEFEEFFSQWGTIIDA 117 (167)
T ss_dssp CHHHHH-----------------------------------------HCEEEEEEEEC-TTCCHHHHHHHHHTTSCCSEE
T ss_pred chhhcc-----------------------------------------CCCeEEECCCC-CCCCHHHHHHHHHhCccEEEE
Confidence 532111 12345555554 359999999999999999999
Q ss_pred EEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 250 KSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 250 kI~~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
++.. ++|||||+|.+.++|.+|++ ++|..|+|++|.|.|++++
T Consensus 118 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 118 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9864 36899999999999999998 8999999999999999764
No 35
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.90 E-value=2.2e-23 Score=208.35 Aligned_cols=160 Identities=17% Similarity=0.302 Sum_probs=132.5
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeE-----EEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED-----FKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~-----I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
.....++|||+|||.++|+++|+++|+.||.|.. ...-+.+|+|||+|.+.++|.+|+ .|++..+.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 4567899999999999999999999999986554 333344799999999999999999 5999999999999998
Q ss_pred ccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEE
Q 002198 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 247 (954)
Q Consensus 168 a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~ 247 (954)
+...... .....+.+++++++ ..+++++|+++|+.||.|.
T Consensus 88 ~~~~~~~---------------------------------------~~~~~~~l~v~nlp-~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 88 PKGRDSK---------------------------------------KVRAARTLLAKNLS-FNITEDELKEVFEDALEIR 127 (175)
T ss_dssp CCCSSCS---------------------------------------TTGGGGEEEEESCC-SSCCHHHHHHHCTTCSEEE
T ss_pred CCCcccc---------------------------------------ccccCCEEEEeCCC-CCCCHHHHHHHHHhcCeEE
Confidence 8654311 11123455555555 3599999999999999998
Q ss_pred EEEE-eCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 248 RIKS-YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 248 ~VkI-~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
.+.. ..++|||||+|.+.++|.+|++.|||..|+|++|.|.|++++
T Consensus 128 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 128 LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 8811 245899999999999999999999999999999999999764
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=3.3e-22 Score=214.53 Aligned_cols=152 Identities=20% Similarity=0.290 Sum_probs=133.6
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~ 174 (954)
...++|||+|||+++|+++|+++|+.||.|.+|.+.+++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~---- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH---- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc----
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999998642
Q ss_pred ccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC-
Q 002198 175 REQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP- 253 (954)
Q Consensus 175 ~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~- 253 (954)
..+ ++|++++ ..+++++|+++|+.||.|.+|.+..
T Consensus 96 ------------------------------------------~~~-l~v~nl~-~~~t~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 96 ------------------------------------------GAA-LTVKNLS-PVVSNELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp ------------------------------------------SSE-EEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred ------------------------------------------CCc-ccccCCC-CCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence 123 4555555 3599999999999999999999864
Q ss_pred ----CCcEEEEEeCCHHHHHHHHHHhC-CCeeC---CceEEEEEecCCC
Q 002198 254 ----SRNYSFVEFRSVDEARRAKEGLQ-GRLFN---DPRITIMFSSSEL 294 (954)
Q Consensus 254 ----srG~AFVeF~s~EdA~kAie~LN-G~~f~---Gr~I~Vs~Ak~e~ 294 (954)
++|||||+|.+.++|.+|++.|| |..+. |++|.|.++....
T Consensus 132 ~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 132 DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 37999999999999999999994 55555 9999999997653
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.2e-17 Score=164.54 Aligned_cols=119 Identities=20% Similarity=0.312 Sum_probs=110.0
Q ss_pred cCCCcEEEEEeCCHHHHHHHHHHh-cCCccCCcceEEEecCC-------------------CCCCCeEEEeCCCccCCHH
Q 002198 53 YSSRSFAFVYFKRVEDAKAAKDAL-QGSDFRGNPIKIEFARP-------------------AKPSKHLWVGGISQTVSKE 112 (954)
Q Consensus 53 gkskG~AFVeF~s~edA~~AL~~L-ng~~L~Gr~I~V~~A~p-------------------~k~srkLfVgNLP~~vTee 112 (954)
.+-+|+++|+|.+.++|++|++.+ ++..+.| .|.+.++.. ....++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 456899999999999999999999 9999999 999988753 2346899999999999999
Q ss_pred HHHhhhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 113 ELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 113 dL~elFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
+|+++|+.||.|.+|.+.++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++..+.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999998 8999999999999999999999999999999999987653
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=5.3e-17 Score=160.71 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=100.6
Q ss_pred cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce-------EEEecC---------CCCCCCeEEEeCCCccCCHHHHHh
Q 002198 53 YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI-------KIEFAR---------PAKPSKHLWVGGISQTVSKEELEE 116 (954)
Q Consensus 53 gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I-------~V~~A~---------p~k~srkLfVgNLP~~vTeedL~e 116 (954)
.+++|||||+|.+.++|++|++.+++....+..+ ...... .....++|||+|||+++|+++|++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 4689999999999999999998877543322222 222211 123468999999999999999999
Q ss_pred hhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 117 GFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 117 lFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
+|+.||.|.+|.+..+ +|+|||+|.+.++|.+|++.|||..|.|+.|+|.+++...
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999876 4799999999999999999999999999999999998764
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=3.1e-17 Score=154.90 Aligned_cols=95 Identities=18% Similarity=0.343 Sum_probs=69.6
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~ 94 (954)
.+++|||+|||.++||++|+++|+.||.|.+|++ +.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4678999999999999999999999999998873 336899999999999999999999999999999999998753
Q ss_pred C-----------CCCeEEEeCCCccCCHHH
Q 002198 95 K-----------PSKHLWVGGISQTVSKEE 113 (954)
Q Consensus 95 k-----------~srkLfVgNLP~~vTeed 113 (954)
. ...+|||+||++++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 2 235799999999999864
No 40
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.9e-16 Score=155.77 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=105.1
Q ss_pred CCeeEEecCCHHHHHHHHHHh-CCceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCC
Q 002198 133 GNTAFVEYSRLEDAAEALKNI-NGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGR 211 (954)
Q Consensus 133 rG~AFVeF~t~EdA~~AIe~L-ng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~ 211 (954)
+|+++|+|.+.++|++|++.+ |+..+.| .|.+.++............. .....
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~-------------------------~~~~~ 66 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH-------------------------HHHMH 66 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC-------------------------CCCSC
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc-------------------------ccccc
Confidence 688999999999999999999 9999999 99999876543221110000 00000
Q ss_pred CCCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 212 NRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 212 ~~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~s-rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
.....+.+.+||++++ ..+++++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|++.|||..|+|++|+|.|+
T Consensus 67 ~~~~~~~~~l~V~nl~-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLG-NNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp SSSSTTSCEEEEESCC-SCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred ccCCCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 1122334555566655 45999999999999999999999876 999999999999999999999999999999999999
Q ss_pred cCC
Q 002198 291 SSE 293 (954)
Q Consensus 291 k~e 293 (954)
+.+
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=6.4e-16 Score=152.90 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=96.4
Q ss_pred CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCC
Q 002198 133 GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRN 212 (954)
Q Consensus 133 rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~ 212 (954)
+|+|||+|.+.++|++|++.+++....+..+.+............. ......
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ 64 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------------HHHHHH 64 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------------------CCSSCC
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------------------cccccc
Confidence 5899999999999999999888754433333333211111100000 000001
Q ss_pred CCCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEE
Q 002198 213 RDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 286 (954)
Q Consensus 213 ~~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~ 286 (954)
........++|++++ ..+++++|+++|+.||.|.+|++.. ++|||||+|.+.++|.+|++.|||..|+|++|+
T Consensus 65 ~~~~~~~~l~v~nl~-~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLT-YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCCCBCCEEEEESCC-TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred cCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 122334455566655 4599999999999999999999864 478999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 002198 287 IMFSSSELAP 296 (954)
Q Consensus 287 Vs~Ak~e~~~ 296 (954)
|.|++....+
T Consensus 144 v~~a~~~~~~ 153 (158)
T 2kn4_A 144 VQMARYGRPP 153 (158)
T ss_dssp EEEECCSSCC
T ss_pred EEECCCCCCC
Confidence 9999776443
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=7.4e-16 Score=144.61 Aligned_cols=102 Identities=22% Similarity=0.368 Sum_probs=92.7
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~---gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
..++++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|++.|++..|.|+.|.|.|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 457899999999999999999999999999999884 66789999999999999999999999999999999999976
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN 123 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~ 123 (954)
.... ++++...++++|+++|++||.
T Consensus 85 ~~~~-----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-----TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh-----hhhhHhHhHHHHHHHHHHhCC
Confidence 4443 678888999999999999983
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=138.44 Aligned_cols=81 Identities=27% Similarity=0.488 Sum_probs=72.0
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
.+.-....++|||+|||.++||++|+++|++||.|.+|. .++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 12 ~en~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 12 HENLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp ----CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 333355678999999999999999999999999999887 36678999999999999999999999999999999
Q ss_pred EEEecCC
Q 002198 87 KIEFARP 93 (954)
Q Consensus 87 ~V~~A~p 93 (954)
+|.|++|
T Consensus 92 ~V~~AkP 98 (99)
T 4fxv_A 92 KVSYARP 98 (99)
T ss_dssp EEEECCB
T ss_pred EEEEeeC
Confidence 9999976
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.57 E-value=5.5e-15 Score=139.43 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=71.6
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
...+|||+|||+++|+++|+++|++||.|.+|+|+++ +|+|||+|.+.++|.+|++.|++..|.|+.|+|.++..+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3568999999999999999999999999999999987 478999999999999999999999999999999998765
Q ss_pred c
Q 002198 172 P 172 (954)
Q Consensus 172 ~ 172 (954)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=133.27 Aligned_cols=82 Identities=23% Similarity=0.374 Sum_probs=73.9
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCc--cCCcceEEEe
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD--FRGNPIKIEF 90 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~--L~Gr~I~V~~ 90 (954)
+.....++++|||+|||.++||++|+++|++||.|.+|...++||||||+|.+.++|.+|++.+++.. |.|+.|+|.|
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 34456789999999999999999999999999999999988899999999999999999999999875 7899999999
Q ss_pred cCCC
Q 002198 91 ARPA 94 (954)
Q Consensus 91 A~p~ 94 (954)
++..
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9753
No 46
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=8.4e-15 Score=134.22 Aligned_cols=86 Identities=27% Similarity=0.455 Sum_probs=78.0
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEEecC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCC----
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK---- 95 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gk-skG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k---- 95 (954)
++|||+|||.++|+++|+++|++||.|.+|.... ++|||||+|.+.++|.+|++.|++..|.|+.|+|.++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 6899999999999999999999999999998655 59999999999999999999999999999999999997532
Q ss_pred ---------CCCeEEEeCCC
Q 002198 96 ---------PSKHLWVGGIS 106 (954)
Q Consensus 96 ---------~srkLfVgNLP 106 (954)
...+||||||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 15689999986
No 47
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=2.2e-14 Score=129.66 Aligned_cols=84 Identities=25% Similarity=0.265 Sum_probs=77.7
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCCCC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS 97 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k~s 97 (954)
..+.-|||+||++.+||++|+++|.+||+|.++....+||||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A------ 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP------ 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC------
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC------
Confidence 35789999999999999999999999999999998889999999999999999999999999999999999975
Q ss_pred CeEEEeCCCccCCHHHHHhhhc
Q 002198 98 KHLWVGGISQTVSKEELEEGFL 119 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFs 119 (954)
+++|+..+|.
T Consensus 79 ------------~e~~~~~~~~ 88 (89)
T 2wbr_A 79 ------------SENEVQSIMQ 88 (89)
T ss_dssp ------------CHHHHHHHHC
T ss_pred ------------CHHHHHHHhh
Confidence 6677777664
No 48
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=136.18 Aligned_cols=89 Identities=20% Similarity=0.304 Sum_probs=77.3
Q ss_pred CCCCCCCCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhc--CCccCCc
Q 002198 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQ--GSDFRGN 84 (954)
Q Consensus 7 ~~~~~~~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Ln--g~~L~Gr 84 (954)
+..+..+.....++++|||+|||+++||++|+++|++||.|.+|.+.++||||||+|.+.++|.+|++.++ +..|.|+
T Consensus 18 ~~~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 18 GSHMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp ----CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred ccccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 33445566667889999999999999999999999999999999987789999999999999999999887 4689999
Q ss_pred ceEEEecCCCC
Q 002198 85 PIKIEFARPAK 95 (954)
Q Consensus 85 ~I~V~~A~p~k 95 (954)
.|+|.|+++..
T Consensus 98 ~l~V~~a~~k~ 108 (119)
T 2ad9_A 98 PIYIQFSNHKE 108 (119)
T ss_dssp CCEEEECSSSS
T ss_pred EEEEEEccCCC
Confidence 99999997544
No 49
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=132.11 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=74.0
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCce--eCCeEEEEEEccCC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQ--IGGEQLRVDFLRSQ 171 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~--i~Gr~I~V~~a~sk 171 (954)
..++++|||+|||+++|+++|+++|++||.|.+|.++++||+|||+|.+.++|.+|++.|++.. +.|+.|+|+|++.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 4578999999999999999999999999999999999999999999999999999999999875 78999999999875
Q ss_pred c
Q 002198 172 P 172 (954)
Q Consensus 172 ~ 172 (954)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 50
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=134.84 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=74.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCC--ceeCCeEEEEEEccCC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING--RQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng--~~i~Gr~I~V~~a~sk 171 (954)
....++|||+|||+++|+++|+++|++||.|.+|.++++||+|||+|++.++|.+|++.|++ ..|.|+.|+|.+++.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 45789999999999999999999999999999999999999999999999999999998864 7899999999999876
Q ss_pred cc
Q 002198 172 PS 173 (954)
Q Consensus 172 ~~ 173 (954)
..
T Consensus 93 ~~ 94 (105)
T 1sjq_A 93 EL 94 (105)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 51
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6e-14 Score=130.19 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=75.2
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhc--CCccCCcceEEEe
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQ--GSDFRGNPIKIEF 90 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Ln--g~~L~Gr~I~V~~ 90 (954)
++....++++|||+|||.++||++|+++|++||.|.+|...+.||||||+|.+.++|.+|++.++ +..|.|+.|+|.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 45557789999999999999999999999999999999987889999999999999999998764 6779999999999
Q ss_pred cCCCC
Q 002198 91 ARPAK 95 (954)
Q Consensus 91 A~p~k 95 (954)
+++..
T Consensus 88 a~~~~ 92 (101)
T 2cq1_A 88 SNHKE 92 (101)
T ss_dssp CSCSS
T ss_pred cCccc
Confidence 97544
No 52
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.8e-14 Score=128.85 Aligned_cols=83 Identities=29% Similarity=0.517 Sum_probs=77.0
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
.+....+.++|||+|||.++|+++|+++|++||.|.+|...+++|||||+|.+.++|.+|++.|++..|.|+.|+|.|++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 34456788999999999999999999999999999999988899999999999999999999999999999999999997
Q ss_pred CCC
Q 002198 93 PAK 95 (954)
Q Consensus 93 p~k 95 (954)
+..
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 53
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.1e-14 Score=130.74 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=74.0
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCcceEEEec
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG--SDFRGNPIKIEFA 91 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng--~~L~Gr~I~V~~A 91 (954)
.....++++|||+|||.++||++|+++|++||.|.+|...++||||||+|.+.++|.+|++.|++ ..|.|+.|+|.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34467889999999999999999999999999999999878899999999999999999998865 4599999999999
Q ss_pred CCCC
Q 002198 92 RPAK 95 (954)
Q Consensus 92 ~p~k 95 (954)
+...
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 7544
No 54
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=133.49 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=73.0
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC--CccCCcceEEEecCCC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG--SDFRGNPIKIEFARPA 94 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng--~~L~Gr~I~V~~A~p~ 94 (954)
..++++|||+|||.++||++|+++|++||.|.+|...++||||||+|.+.++|.+|++.+++ ..|.|+.|+|.|+++.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 56789999999999999999999999999999999888899999999999999999988864 7899999999999754
Q ss_pred C
Q 002198 95 K 95 (954)
Q Consensus 95 k 95 (954)
.
T Consensus 93 ~ 93 (105)
T 1sjq_A 93 E 93 (105)
T ss_dssp S
T ss_pred C
Confidence 3
No 55
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6e-14 Score=128.27 Aligned_cols=86 Identities=16% Similarity=0.317 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcc
Q 002198 11 AYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (954)
Q Consensus 11 ~~~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~ 85 (954)
........+.++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 8 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 8 VFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 334455678899999999999999999999999999998883 456799999999999999999999999999999
Q ss_pred eEEEecCCCCC
Q 002198 86 IKIEFARPAKP 96 (954)
Q Consensus 86 I~V~~A~p~k~ 96 (954)
|+|.++++...
T Consensus 88 l~v~~a~~~~~ 98 (100)
T 2do4_A 88 IKVAISNSGPS 98 (100)
T ss_dssp EEEEECCCCSC
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 56
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-13 Score=126.10 Aligned_cols=82 Identities=27% Similarity=0.594 Sum_probs=75.8
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccC--CcceEEEecC
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFAR 92 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~--Gr~I~V~~A~ 92 (954)
....++++|||+|||.++|+++|+++|++||.|.+|.....++||||+|.+.++|.+|++.|++..|. |+.|+|.|++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 34667899999999999999999999999999999998778999999999999999999999999999 9999999998
Q ss_pred CCCC
Q 002198 93 PAKP 96 (954)
Q Consensus 93 p~k~ 96 (954)
+...
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 57
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=132.76 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=73.0
Q ss_pred CCCCeEEEeCCCc-cCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCc--eeCCeEEEEEEccCC
Q 002198 95 KPSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR--QIGGEQLRVDFLRSQ 171 (954)
Q Consensus 95 k~srkLfVgNLP~-~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~--~i~Gr~I~V~~a~sk 171 (954)
.++++|||+|||+ ++|++||+++|+.||.|.+|.+++++++|||+|.+.++|.+|++.|++. .|.|+.|+|.+++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 4678999999999 9999999999999999999999999999999999999999999998864 599999999999865
Q ss_pred c
Q 002198 172 P 172 (954)
Q Consensus 172 ~ 172 (954)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 4
No 58
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.9e-14 Score=131.81 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=73.0
Q ss_pred CCCCCEEEEccCCc-CCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC--ccCCcceEEEecCC
Q 002198 17 APPSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS--DFRGNPIKIEFARP 93 (954)
Q Consensus 17 ~~~s~tLfV~NLP~-svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~--~L~Gr~I~V~~A~p 93 (954)
..++++|||+|||. ++||+||+++|++||.|.+|...++++||||+|.+.++|.+|++.|++. .|.|+.|+|.+++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 55899999999999 9999999999999999999998889999999999999999999988864 59999999999975
Q ss_pred CC
Q 002198 94 AK 95 (954)
Q Consensus 94 ~k 95 (954)
.+
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 59
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=130.86 Aligned_cols=75 Identities=27% Similarity=0.529 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
...+|||+|||+++|+++|+++|++||.|.+|.+.+++ |+|||+|.+.++|.+|++.|||..|.|+.|+|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999999873 689999999999999999999999999999999986
Q ss_pred C
Q 002198 170 S 170 (954)
Q Consensus 170 s 170 (954)
.
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 60
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.50 E-value=8.5e-15 Score=132.68 Aligned_cols=77 Identities=25% Similarity=0.395 Sum_probs=69.0
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhccC-CeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhc-CCccCCcceEEEec
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKFG-ALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQ-GSDFRGNPIKIEFA 91 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~yG-~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Ln-g~~L~Gr~I~V~~A 91 (954)
+++|||+|||.++||++|+++|+.|| .|.+|+ .++++|||||+|.+.++|.+|++.++ +..|.|+.|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 788886 36789999999999999999998774 56799999999999
Q ss_pred CCCCC
Q 002198 92 RPAKP 96 (954)
Q Consensus 92 ~p~k~ 96 (954)
++...
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86544
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.5e-14 Score=128.73 Aligned_cols=84 Identities=29% Similarity=0.500 Sum_probs=75.9
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
...+..+.++|||+|||.++|+++|+++|+.||.|.+|.+ +.++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 4445678899999999999999999999999999999983 5678999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 002198 87 KIEFARPAKP 96 (954)
Q Consensus 87 ~V~~A~p~k~ 96 (954)
+|.++++.+.
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dnm_A 86 RVQVARYGRR 95 (103)
T ss_dssp EEEECSSCCS
T ss_pred EEEECCcCCC
Confidence 9999986543
No 62
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=127.44 Aligned_cols=83 Identities=25% Similarity=0.352 Sum_probs=75.3
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
..+..+.++|||+|||.++|+++|+++|+.||.|.+|. .++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34467889999999999999999999999999999988 345789999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 002198 88 IEFARPAKP 96 (954)
Q Consensus 88 V~~A~p~k~ 96 (954)
|.++++.+.
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999986554
No 63
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.4e-14 Score=128.87 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=74.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHh--CCceeCCeEEEEEEccCC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNI--NGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~L--ng~~i~Gr~I~V~~a~sk 171 (954)
..++++|||+|||+++|+++|+++|+.||.|.+|.++++||+|||+|.+.++|.+|++.| ++..+.|+.|+|.|++.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 456789999999999999999999999999999999999999999999999999999977 467899999999999876
Q ss_pred ccc
Q 002198 172 PSR 174 (954)
Q Consensus 172 ~~~ 174 (954)
...
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 543
No 64
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=124.77 Aligned_cols=80 Identities=28% Similarity=0.522 Sum_probs=73.1
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..++++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 357899999999999999999999999999998883 55689999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002198 91 ARPAKP 96 (954)
Q Consensus 91 A~p~k~ 96 (954)
+++...
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 976543
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=125.72 Aligned_cols=82 Identities=23% Similarity=0.511 Sum_probs=73.9
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
.....+.++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++ +++..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 344678899999999999999999999999999999884 4578999999999999999997 999999999999
Q ss_pred EEecCCCCC
Q 002198 88 IEFARPAKP 96 (954)
Q Consensus 88 V~~A~p~k~ 96 (954)
|.++++...
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999986543
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.9e-14 Score=126.76 Aligned_cols=81 Identities=30% Similarity=0.451 Sum_probs=74.1
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
...++++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999999999999999983 4467999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002198 90 FARPAKP 96 (954)
Q Consensus 90 ~A~p~k~ 96 (954)
++++...
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9986544
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.49 E-value=7.2e-14 Score=123.50 Aligned_cols=76 Identities=34% Similarity=0.555 Sum_probs=71.0
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..+.++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 567899999999999999999999999999999973 44799999999999999999999999999999999999
Q ss_pred cC
Q 002198 91 AR 92 (954)
Q Consensus 91 A~ 92 (954)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.8e-13 Score=126.38 Aligned_cols=84 Identities=29% Similarity=0.471 Sum_probs=75.3
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecC-------CCcEEEEEeCCHHHHHHHHHHh-cCCccCCc
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-------SRSFAFVYFKRVEDAKAAKDAL-QGSDFRGN 84 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gk-------skG~AFVeF~s~edA~~AL~~L-ng~~L~Gr 84 (954)
...+..+.++|||+|||.++|+++|+++|+.||.|.+|.+.. ++|||||+|.+.++|.+|++.| ++..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 344467889999999999999999999999999999998533 4899999999999999999999 99999999
Q ss_pred ceEEEecCCCCC
Q 002198 85 PIKIEFARPAKP 96 (954)
Q Consensus 85 ~I~V~~A~p~k~ 96 (954)
.|+|.|+++...
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999986544
No 69
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.49 E-value=6.4e-14 Score=131.64 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=71.8
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..+.++|||+|||.++||++|+++|++||.|.+|. +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999999999999999999999999987 367899999999999999999999999999999999999
Q ss_pred cCC
Q 002198 91 ARP 93 (954)
Q Consensus 91 A~p 93 (954)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 853
No 70
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.49 E-value=1.5e-13 Score=126.64 Aligned_cols=82 Identities=33% Similarity=0.496 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCC---cce
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRG---NPI 86 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~G---r~I 86 (954)
....+.++|||+|||.++|+++|+++|+.||.|.+|.+ ++++|||||+|.+.++|.+|++.|++..|.| +.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567999999999999999999999999999998883 3458999999999999999999999999998 999
Q ss_pred EEEecCCCCC
Q 002198 87 KIEFARPAKP 96 (954)
Q Consensus 87 ~V~~A~p~k~ 96 (954)
+|.|+++...
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999986543
No 71
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.49 E-value=1e-13 Score=129.99 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=76.1
Q ss_pred CCCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcc
Q 002198 12 YDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (954)
Q Consensus 12 ~~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~ 85 (954)
....+..+.++|||+|||.++|+++|+++|+.||.|.+|.+ +.++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34556778999999999999999999999999999998873 345799999999999999999999999999999
Q ss_pred eEEEecCCCCC
Q 002198 86 IKIEFARPAKP 96 (954)
Q Consensus 86 I~V~~A~p~k~ 96 (954)
|+|.|+++...
T Consensus 87 l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 IRTNWATRKPP 97 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999986543
No 72
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.49 E-value=9.8e-14 Score=126.08 Aligned_cols=77 Identities=21% Similarity=0.440 Sum_probs=71.6
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
++++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999983 4568999999999999999999999999999999999997
Q ss_pred CCC
Q 002198 93 PAK 95 (954)
Q Consensus 93 p~k 95 (954)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 73
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.5e-14 Score=123.96 Aligned_cols=77 Identities=25% Similarity=0.462 Sum_probs=72.5
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHh-cCCccCCcceEEEecC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDAL-QGSDFRGNPIKIEFAR 92 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~L-ng~~L~Gr~I~V~~A~ 92 (954)
...+.++|||+|||.++|+++|+++|++||.|.+|...+++|||||+|.+.++|.+|++.| ++..|.|+.|+|+|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3567899999999999999999999999999999998888999999999999999999888 9999999999999974
No 74
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=126.48 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=74.6
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
..+..+.++|||+|||.++|+++|+++|+.||.|.+|.+ ..++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 344678899999999999999999999999999999884 3368999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002198 90 FARPAKP 96 (954)
Q Consensus 90 ~A~p~k~ 96 (954)
|+++...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9986443
No 75
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=127.38 Aligned_cols=84 Identities=26% Similarity=0.429 Sum_probs=76.0
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
++....+.++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4555678999999999999999999999999999998884 367899999999999999999999999999999999
Q ss_pred EecCCCCC
Q 002198 89 EFARPAKP 96 (954)
Q Consensus 89 ~~A~p~k~ 96 (954)
.|+++...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99986543
No 76
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=6.8e-14 Score=131.79 Aligned_cols=80 Identities=28% Similarity=0.462 Sum_probs=72.5
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
...+..+.++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445678899999999999999999999999999999873 4568999999999999999999999999999999
Q ss_pred EEEecC
Q 002198 87 KIEFAR 92 (954)
Q Consensus 87 ~V~~A~ 92 (954)
+|+|++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999974
No 77
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.1e-14 Score=134.05 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=75.7
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCC--ceeCCeEEEEEEccC
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING--RQIGGEQLRVDFLRS 170 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng--~~i~Gr~I~V~~a~s 170 (954)
...++++|||+|||+++|+++|+++|++||.|.+|.++++||+|||+|++.++|.+|++.|++ ..|.|+.|+|.+++.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 355788999999999999999999999999999999999999999999999999999998874 689999999999987
Q ss_pred Ccccc
Q 002198 171 QPSRR 175 (954)
Q Consensus 171 k~~~~ 175 (954)
+....
T Consensus 107 k~~~~ 111 (119)
T 2ad9_A 107 KELKT 111 (119)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 65433
No 78
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=129.08 Aligned_cols=79 Identities=18% Similarity=0.393 Sum_probs=70.8
Q ss_pred CCeEEEeCCCccCCHHHHHhhhcccc-ceeEEEEeec------CCeeEEecCCHHHHHHHHHHhC-CceeCCeEEEEEEc
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLKD------GNTAFVEYSRLEDAAEALKNIN-GRQIGGEQLRVDFL 168 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG-~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Ln-g~~i~Gr~I~V~~a 168 (954)
+++|||+|||+++|+++|+++|++|| .|.+|+++++ +|+|||+|.+.++|.+|++.++ +..++|+.|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999876 5889999999999999998874 56899999999999
Q ss_pred cCCcccc
Q 002198 169 RSQPSRR 175 (954)
Q Consensus 169 ~sk~~~~ 175 (954)
..+....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 8765433
No 79
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.3e-14 Score=128.90 Aligned_cols=79 Identities=24% Similarity=0.468 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
.....+++|||+|||.++|+++|+++|+.||.|.+|.+.+++|||||+|.+.++|.+|++.|++..|.|+.|+|.|+++
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3456689999999999999999999999999999999889999999999999999999999999999999999999864
No 80
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.48 E-value=6.2e-14 Score=126.68 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=71.6
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
.+..|||+||++.+|+++|+++|.+||+|.++.+...+|||||+|.+.++|.+|++.||+..+.|+.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999984
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2e-13 Score=125.48 Aligned_cols=84 Identities=29% Similarity=0.514 Sum_probs=75.1
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEec----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY----SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~g----kskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
......+.++|||+|||.++|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34446788999999999999999999999999999998843 35899999999999999999999999999999999
Q ss_pred EecCCCCC
Q 002198 89 EFARPAKP 96 (954)
Q Consensus 89 ~~A~p~k~ 96 (954)
.++++...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99976543
No 82
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.7e-14 Score=127.90 Aligned_cols=84 Identities=33% Similarity=0.580 Sum_probs=75.5
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
...+..+.++|||+|||.++|+++|+++|+.||.|.+|.+ +.++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3445778999999999999999999999999999998873 4567899999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 002198 87 KIEFARPAKP 96 (954)
Q Consensus 87 ~V~~A~p~k~ 96 (954)
+|.|+++...
T Consensus 88 ~v~~a~~~~~ 97 (103)
T 2cq0_A 88 NVEWAKPSTN 97 (103)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9999986543
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-13 Score=127.59 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=74.4
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCC-----eEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG-----EQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~G-----r~I~V~~a 168 (954)
....++|||+|||+++|+++|+++|++||.|..|.++.+ |+|||+|.+.++|.+||+.||+..|.| +.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 456789999999999999999999999999999999988 999999999999999999999999999 99999999
Q ss_pred cCCcc
Q 002198 169 RSQPS 173 (954)
Q Consensus 169 ~sk~~ 173 (954)
..+..
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87654
No 84
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.2e-13 Score=126.98 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCC--eeCCceEEEEEec
Q 002198 214 DGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGR--LFNDPRITIMFSS 291 (954)
Q Consensus 214 ~~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~--~f~Gr~I~Vs~Ak 291 (954)
...++++|+|++++ .+++|++|+++|++||.|.+|.+.++||||||+|.+.++|.+|++.|++. .|.|++|.|.|++
T Consensus 11 ~~~p~~~l~V~nLp-~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 11 KVSVSPVVHVRGLC-ESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCSEEEEESCC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred cCCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 34566777777777 47999999999999999999999999999999999999999999999765 4999999999997
Q ss_pred CCCC
Q 002198 292 SELA 295 (954)
Q Consensus 292 ~e~~ 295 (954)
.+..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 7654
No 85
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.48 E-value=6.7e-14 Score=124.25 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=68.8
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
.+.++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999998873 446899999999999999999999999999999999999
Q ss_pred CC
Q 002198 92 RP 93 (954)
Q Consensus 92 ~p 93 (954)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 86
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=124.62 Aligned_cols=81 Identities=31% Similarity=0.466 Sum_probs=73.8
Q ss_pred CCCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcc
Q 002198 12 YDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (954)
Q Consensus 12 ~~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~ 85 (954)
.......+.++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34455678899999999999999999999999999999883 556899999999999999999999999999999
Q ss_pred eEEEecC
Q 002198 86 IKIEFAR 92 (954)
Q Consensus 86 I~V~~A~ 92 (954)
|+|+|++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999974
No 87
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.4e-14 Score=127.11 Aligned_cols=87 Identities=34% Similarity=0.678 Sum_probs=77.9
Q ss_pred ceEEEecCCCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeC--CeE
Q 002198 85 PIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG--GEQ 162 (954)
Q Consensus 85 ~I~V~~A~p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~--Gr~ 162 (954)
..++.+.+ ..+.++|||+|||+++|+++|+++|++||.|++|.+.+++++|||+|.+.++|.+|++.||+..+. |+.
T Consensus 6 ~~~~~~~~-~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 6 SGKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCC-CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred cccccCCC-CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 33444433 456789999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEccCCc
Q 002198 163 LRVDFLRSQP 172 (954)
Q Consensus 163 I~V~~a~sk~ 172 (954)
|+|.+++.+.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 88
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=126.25 Aligned_cols=81 Identities=35% Similarity=0.607 Sum_probs=73.9
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
...+.++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3667899999999999999999999999999999883 3468999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002198 90 FARPAKP 96 (954)
Q Consensus 90 ~A~p~k~ 96 (954)
++++...
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9976544
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.48 E-value=1.1e-13 Score=129.96 Aligned_cols=83 Identities=28% Similarity=0.468 Sum_probs=74.5
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
.....+.++|||+|||.++|+++|+++|+.||.|.+|. .++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44466789999999999999999999999999999887 345679999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 002198 88 IEFARPAKP 96 (954)
Q Consensus 88 V~~A~p~k~ 96 (954)
|.|+++...
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999986544
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=127.48 Aligned_cols=81 Identities=30% Similarity=0.571 Sum_probs=73.7
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~---gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
...+.++|||+|||.++|+++|+++|+.||.|..|.+ +.+++||||+|.+.++|.+|++.|++..|.|+.|+|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3567899999999999999999999999999998884 4468899999999999999999999999999999999998
Q ss_pred CCCC
Q 002198 93 PAKP 96 (954)
Q Consensus 93 p~k~ 96 (954)
+.+.
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 91
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.48 E-value=9.5e-14 Score=122.18 Aligned_cols=75 Identities=35% Similarity=0.608 Sum_probs=69.5
Q ss_pred CCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 20 s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
+++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 478999999999999999999999999998873 45589999999999999999999999999999999999975
Q ss_pred C
Q 002198 94 A 94 (954)
Q Consensus 94 ~ 94 (954)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2e-13 Score=122.57 Aligned_cols=79 Identities=20% Similarity=0.422 Sum_probs=73.3
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK 95 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k 95 (954)
...+.++|||+|||.++|+++|+++|++||.|.+|... ++||||+|.+.++|.+|++.|++..|.|+.|+|+++++..
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 35688999999999999999999999999999999865 7999999999999999999999999999999999998654
Q ss_pred C
Q 002198 96 P 96 (954)
Q Consensus 96 ~ 96 (954)
.
T Consensus 82 ~ 82 (90)
T 2dnq_A 82 K 82 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.47 E-value=1e-13 Score=133.75 Aligned_cols=83 Identities=39% Similarity=0.661 Sum_probs=75.9
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
......++++|||+|||.++|+++|+++|++||.|.+|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4455778999999999999999999999999999998883 4678999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 002198 87 KIEFARPAK 95 (954)
Q Consensus 87 ~V~~A~p~k 95 (954)
+|.|+++.+
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999997654
No 94
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.47 E-value=1.3e-13 Score=123.77 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=73.4
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
..+.++|||+|||.++|+++|+++|++||.|..|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999998873 4578999999999999999999999999999999999998
Q ss_pred CCCC
Q 002198 93 PAKP 96 (954)
Q Consensus 93 p~k~ 96 (954)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6544
No 95
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=131.13 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=72.8
Q ss_pred CCCCCEEEEccCCcC-CcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhc--CCccCCcceEEEecCC
Q 002198 17 APPSSNLWVGNLSAD-TTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQ--GSDFRGNPIKIEFARP 93 (954)
Q Consensus 17 ~~~s~tLfV~NLP~s-vTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Ln--g~~L~Gr~I~V~~A~p 93 (954)
..++++|||+|||.+ +||++|+++|++||.|.+|...++||||||+|.+.++|.+|++.|+ +..|.|+.|+|.+++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 678999999999998 9999999999999999999988999999999999999999999886 4569999999999974
Q ss_pred CC
Q 002198 94 AK 95 (954)
Q Consensus 94 ~k 95 (954)
..
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 96
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-13 Score=123.40 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=73.4
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCee-EEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALD-KVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~-sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
.+...+++|||+|||.++|+++|+++|+.||.|. .+..++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++++
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3456689999999999999999999999999984 444678999999999999999999999999999999999999986
Q ss_pred CC
Q 002198 94 AK 95 (954)
Q Consensus 94 ~k 95 (954)
.+
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 97
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.47 E-value=1.9e-13 Score=126.13 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=75.1
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCcc---CC
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDF---RG 83 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L---~G 83 (954)
......+.++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 3445678899999999999999999999999999999983 55789999999999999999999999887 89
Q ss_pred cceEEEecCCCCC
Q 002198 84 NPIKIEFARPAKP 96 (954)
Q Consensus 84 r~I~V~~A~p~k~ 96 (954)
+.|+|.++++...
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 9999999976543
No 98
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=1.2e-13 Score=129.20 Aligned_cols=84 Identities=25% Similarity=0.546 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 11 AYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 11 ~~~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
........++++|||+|||.++|+++|+++|++||.|.+|... +|||||+|.+.++|.+|++.|++..|.|+.|+|.|
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3344557789999999999999999999999999999999865 89999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002198 91 ARPAKP 96 (954)
Q Consensus 91 A~p~k~ 96 (954)
+++...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 976543
No 99
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=8.1e-14 Score=131.54 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=72.7
Q ss_pred cceEEEecCCCCCCCeEEEeCCCccCCHHHHHhhhcccc-ceeEEEEee--cCCeeEEecCCHHHHHHHHHHhCCceeCC
Q 002198 84 NPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLK--DGNTAFVEYSRLEDAAEALKNINGRQIGG 160 (954)
Q Consensus 84 r~I~V~~A~p~k~srkLfVgNLP~~vTeedL~elFskfG-~Ie~I~Ilr--drG~AFVeF~t~EdA~~AIe~Lng~~i~G 160 (954)
..+.+.+.++.....+|||+|||+++++++|+++|++|| .|..+.+.. .+|+|||+|.+.++|++|++.|||..|.|
T Consensus 15 ~~~~~~~~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 15 VPRGSHMSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp ----------CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred eecchhcCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 366777887778889999999999999999999999999 899999863 47999999999999999999999999999
Q ss_pred eEEEEEEccCC
Q 002198 161 EQLRVDFLRSQ 171 (954)
Q Consensus 161 r~I~V~~a~sk 171 (954)
+.|+|.+++..
T Consensus 95 r~i~V~~a~~~ 105 (111)
T 2jvr_A 95 SVITVERDDNP 105 (111)
T ss_dssp EEEEEEESCC-
T ss_pred eEEEEEECCCC
Confidence 99999998754
No 100
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=127.71 Aligned_cols=81 Identities=20% Similarity=0.488 Sum_probs=75.8
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK 95 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k 95 (954)
.....++|||+|||.++|+++|+++|+.||.|.+|.....+|||||+|.+.++|.+|++.|++..|.|+.|+|.|+++..
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 45678999999999999999999999999999999987789999999999999999999999999999999999998654
Q ss_pred C
Q 002198 96 P 96 (954)
Q Consensus 96 ~ 96 (954)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 101
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8e-14 Score=130.87 Aligned_cols=78 Identities=28% Similarity=0.355 Sum_probs=73.8
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
..+..++|||+|||.++|+++|+++|++||.|.+|...++++||||+|.+.++|.+|++.|++..|.|+.|+|.|++.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 355678999999999999999999999999999999888999999999999999999999999999999999999964
No 102
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=126.43 Aligned_cols=81 Identities=33% Similarity=0.542 Sum_probs=74.2
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
...+.++|||+|||.++|+++|+++|+.||.|.+|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999999999999999883 5579999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002198 90 FARPAKP 96 (954)
Q Consensus 90 ~A~p~k~ 96 (954)
++++...
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9986543
No 103
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.46 E-value=8.6e-14 Score=130.47 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=74.0
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec---CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd---rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
+...+++|||+|||+++|+++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3567889999999999999999999999999999999876 5899999999999999999999999999999999987
Q ss_pred CCc
Q 002198 170 SQP 172 (954)
Q Consensus 170 sk~ 172 (954)
...
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 654
No 104
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=124.45 Aligned_cols=81 Identities=38% Similarity=0.615 Sum_probs=73.7
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
......++++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3444678899999999999999999999999999998883 5678999999999999999999999999999999
Q ss_pred EEEecCC
Q 002198 87 KIEFARP 93 (954)
Q Consensus 87 ~V~~A~p 93 (954)
+|+|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999863
No 105
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=130.11 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=73.5
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
.+.++|||+||++++++++|+++|++||.|.+|.|+++ +|+|||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999877 468999999999999999999999999999999999
Q ss_pred cCCcc
Q 002198 169 RSQPS 173 (954)
Q Consensus 169 ~sk~~ 173 (954)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76644
No 106
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=128.74 Aligned_cols=82 Identities=29% Similarity=0.542 Sum_probs=74.1
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEec----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY----SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~g----kskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
......+.++|||+|||.++|+++|+++|++||.|.+|... .++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44556788999999999999999999999999999988843 35899999999999999999999999999999999
Q ss_pred EecCCC
Q 002198 89 EFARPA 94 (954)
Q Consensus 89 ~~A~p~ 94 (954)
+++++.
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998753
No 107
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.46 E-value=7e-14 Score=128.23 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=69.9
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCC--eeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCC----ccCC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGA--LDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGS----DFRG 83 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~--I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~----~L~G 83 (954)
.....++|||+|||+++||++|+++|++||. |.+|+ .+++||||||+|.+.++|.+|++.|++. .|.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4678899999999999999999999999995 45666 4678999999999999999999999997 4899
Q ss_pred cceEEEecCC
Q 002198 84 NPIKIEFARP 93 (954)
Q Consensus 84 r~I~V~~A~p 93 (954)
+.|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999863
No 108
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=122.34 Aligned_cols=78 Identities=27% Similarity=0.546 Sum_probs=70.2
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||.++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 456789999999999999999999999999999999987 47899999999999999999999999999999999
Q ss_pred ccCC
Q 002198 168 LRSQ 171 (954)
Q Consensus 168 a~sk 171 (954)
++.+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 109
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.3e-13 Score=123.98 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
....++|||+|||+++|+++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 456799999999999999999999999999999999987 6899999999999999999999999999999999998
Q ss_pred CCcc
Q 002198 170 SQPS 173 (954)
Q Consensus 170 sk~~ 173 (954)
.+..
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7654
No 110
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.6e-13 Score=126.06 Aligned_cols=82 Identities=26% Similarity=0.422 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhc------CCccC
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQ------GSDFR 82 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Ln------g~~L~ 82 (954)
....+.++|||+|||.++|+++|+++|..||.|.+|.+ +.++|||||+|.+.++|.+|++.++ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34667899999999999999999999999999999983 4679999999999999999999999 99999
Q ss_pred CcceEEEecCCCCC
Q 002198 83 GNPIKIEFARPAKP 96 (954)
Q Consensus 83 Gr~I~V~~A~p~k~ 96 (954)
|+.|+|.++++...
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999986554
No 111
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.46 E-value=2.1e-13 Score=121.10 Aligned_cols=78 Identities=19% Similarity=0.414 Sum_probs=71.4
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
...++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 35789999999999999999999999999999883 22789999999999999999999999999999999999
Q ss_pred cCCCC
Q 002198 91 ARPAK 95 (954)
Q Consensus 91 A~p~k 95 (954)
+.+.+
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 112
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.46 E-value=5.3e-14 Score=136.80 Aligned_cols=116 Identities=22% Similarity=0.363 Sum_probs=75.3
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC---CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-
Q 002198 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP---AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD- 132 (954)
Q Consensus 57 G~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p---~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd- 132 (954)
.++|++|.+...|..|++.+++....|+. .+.+..+ ....++|||+|||+++|+++|+++|+.||.|.+|.++.+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 83 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 83 (135)
T ss_dssp -------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 45777888888888888888776655442 2233333 234679999999999999999999999999999999876
Q ss_pred -----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002198 133 -----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (954)
Q Consensus 133 -----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~ 173 (954)
+|+|||+|.+.++|.+|++.||+..|.|+.|+|.+++....
T Consensus 84 ~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 84 YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp SSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 57999999999999999999999999999999999987653
No 113
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.46 E-value=7.7e-13 Score=121.82 Aligned_cols=79 Identities=29% Similarity=0.521 Sum_probs=68.4
Q ss_pred CceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCCC
Q 002198 217 PSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 296 (954)
Q Consensus 217 ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~~ 296 (954)
+.+.|+|++++ ..+++++|+++|+.||.|.+|++. ++||||+|.+.++|.+|++.|||..|.|++|.|.|++.+...
T Consensus 10 ~~~~l~V~nl~-~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLA-NTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCC-TTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 34455556555 359999999999999999999998 789999999999999999999999999999999999876654
Q ss_pred CC
Q 002198 297 GK 298 (954)
Q Consensus 297 g~ 298 (954)
..
T Consensus 87 ~~ 88 (103)
T 2dgu_A 87 RK 88 (103)
T ss_dssp CC
T ss_pred ch
Confidence 43
No 114
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=125.90 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=75.0
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
....++|||+|||+++|+++|+++|++||.|.+|.+.+++|+|||+|.+.++|.+|++.||+..|.|+.|+|.+++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999998754
No 115
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.46 E-value=1.7e-13 Score=120.55 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=71.4
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
+.+|||+|||.++++++|+++|+.||.|.++.+..+ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.+++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999987 57899999999999999999999999999999999886
Q ss_pred Cc
Q 002198 171 QP 172 (954)
Q Consensus 171 k~ 172 (954)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=121.99 Aligned_cols=76 Identities=26% Similarity=0.524 Sum_probs=72.4
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHh-CCceeCCeEEEEEEcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNI-NGRQIGGEQLRVDFLR 169 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~L-ng~~i~Gr~I~V~~a~ 169 (954)
....++|||+|||.++++++|+++|++||.|.+|.+.+++|+|||+|.+.++|.+|++.| ++..+.|+.|+|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456789999999999999999999999999999999999999999999999999999989 9999999999999874
No 117
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=126.97 Aligned_cols=78 Identities=21% Similarity=0.475 Sum_probs=71.9
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..++++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|++.|++..|.|+.|+|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 456789999999999999999999999999998883 55689999999999999999999999999999999999
Q ss_pred cCCC
Q 002198 91 ARPA 94 (954)
Q Consensus 91 A~p~ 94 (954)
+++.
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 118
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=125.19 Aligned_cols=80 Identities=34% Similarity=0.514 Sum_probs=72.4
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEec---------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY---------SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~g---------kskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
..++++|||+|||.++|+++|+++|+.||.|..|... +++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3578999999999999999999999999999988732 5679999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 002198 88 IEFARPAKP 96 (954)
Q Consensus 88 V~~A~p~k~ 96 (954)
|.++++...
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999976543
No 119
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=126.70 Aligned_cols=80 Identities=24% Similarity=0.505 Sum_probs=75.8
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~ 173 (954)
....++|||+|||.++++++|+++|+.||.|.+|.+.+++|+|||+|.+.++|.+|++.|++..|.|+.|+|.+++.+..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999987654
No 120
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.45 E-value=2.4e-13 Score=120.13 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=71.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999999876 68999999999999999999999999999999998
Q ss_pred cc
Q 002198 168 LR 169 (954)
Q Consensus 168 a~ 169 (954)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 121
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=125.00 Aligned_cols=80 Identities=26% Similarity=0.503 Sum_probs=72.4
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEE-E------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKV-T------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV-~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
..++++|||+|||.++|+++|+++|+.||.|.+| . .+.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999999999999877 5 34568999999999999999998899999999999999
Q ss_pred ecCCCCC
Q 002198 90 FARPAKP 96 (954)
Q Consensus 90 ~A~p~k~ 96 (954)
++++...
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9976543
No 122
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.5e-13 Score=123.82 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=73.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHH----hhhccccceeEEEEeec---CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELE----EGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~----elFskfG~Ie~I~Ilrd---rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
....++|||+|||+++++++|+ ++|++||.|.+|.++.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4467899999999999999999 99999999999999977 7899999999999999999999999999999999
Q ss_pred EccCCc
Q 002198 167 FLRSQP 172 (954)
Q Consensus 167 ~a~sk~ 172 (954)
+++...
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 997654
No 123
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.4e-13 Score=123.89 Aligned_cols=81 Identities=28% Similarity=0.508 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
....++|||+|||+++++++|+++|+.||.|.+|.+.++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 456899999999999999999999999999999999986 5899999999999999999999999999999999998
Q ss_pred CCccc
Q 002198 170 SQPSR 174 (954)
Q Consensus 170 sk~~~ 174 (954)
.+...
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 76543
No 124
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.45 E-value=4.3e-13 Score=123.49 Aligned_cols=79 Identities=30% Similarity=0.600 Sum_probs=73.2
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~~ 174 (954)
...++|||+|||+++|+++|+++|++||.|.+|.++ +++|||+|.+.++|.+|++.||+..|.|+.|+|.+++.+...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 457899999999999999999999999999999987 569999999999999999999999999999999999877544
Q ss_pred c
Q 002198 175 R 175 (954)
Q Consensus 175 ~ 175 (954)
.
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 125
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.4e-13 Score=127.07 Aligned_cols=84 Identities=30% Similarity=0.470 Sum_probs=74.8
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCee--------EEE------ecCCCcEEEEEeCCHHHHHHHHHHhcC
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALD--------KVT------TYSSRSFAFVYFKRVEDAKAAKDALQG 78 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~--------sV~------~gkskG~AFVeF~s~edA~~AL~~Lng 78 (954)
+..+..+.++|||+|||.++|+++|+++|+.||.|. .|. .++++|||||+|.+.++|.+|++.|++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 344567899999999999999999999999999998 466 245689999999999999999999999
Q ss_pred CccCCcceEEEecCCCCC
Q 002198 79 SDFRGNPIKIEFARPAKP 96 (954)
Q Consensus 79 ~~L~Gr~I~V~~A~p~k~ 96 (954)
..|.|+.|+|.++++...
T Consensus 88 ~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CEETTEECEEECSSCCCC
T ss_pred CccCCCEEEEEECCCCCC
Confidence 999999999999986543
No 126
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.3e-13 Score=121.60 Aligned_cols=81 Identities=26% Similarity=0.510 Sum_probs=74.0
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
.....+.++|||+|||.++|+++|+++|++||.|.+|... ++||||+|.+.++|.+|++.|++..|.|+.|+|.++++
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4457788999999999999999999999999999999875 55999999999999999999999999999999999976
Q ss_pred CCC
Q 002198 94 AKP 96 (954)
Q Consensus 94 ~k~ 96 (954)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 127
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.45 E-value=1.9e-13 Score=127.12 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=73.0
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
...++++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3567899999999999999999999999999999983 4568999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002198 90 FARPAK 95 (954)
Q Consensus 90 ~A~p~k 95 (954)
|+++..
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997544
No 128
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=127.44 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
+...+.++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.+++..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33667899999999999999999999999999998873 456899999999999999999999999999999999
Q ss_pred EecCCC
Q 002198 89 EFARPA 94 (954)
Q Consensus 89 ~~A~p~ 94 (954)
.++++.
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 999754
No 129
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.6e-13 Score=126.54 Aligned_cols=81 Identities=23% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
...+..+.++|||+|||.++|+++|+++|+.||.|.+|.+ ++++|||||+|.+.++|.+|++.+++ .|.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 4455778999999999999999999999999999999883 45689999999999999999998998 8999999
Q ss_pred EEEecCCC
Q 002198 87 KIEFARPA 94 (954)
Q Consensus 87 ~V~~A~p~ 94 (954)
+|+++++.
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999653
No 130
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=3.1e-13 Score=123.18 Aligned_cols=80 Identities=28% Similarity=0.396 Sum_probs=74.7
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++|+++|+++|+.||.|.+|.++.++ |+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998874 8999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
+..+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 988754
No 131
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.44 E-value=3.4e-13 Score=123.14 Aligned_cols=78 Identities=29% Similarity=0.477 Sum_probs=71.0
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeE--------EE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCc
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK--------VT------TYSSRSFAFVYFKRVEDAKAAKDALQGSD 80 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~s--------V~------~gkskG~AFVeF~s~edA~~AL~~Lng~~ 80 (954)
....+.++|||+|||.++|+++|+++|++||.|.+ |. .++++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34667899999999999999999999999999988 66 24568999999999999999999999999
Q ss_pred cCCcceEEEecC
Q 002198 81 FRGNPIKIEFAR 92 (954)
Q Consensus 81 L~Gr~I~V~~A~ 92 (954)
|.|+.|+|++++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 132
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.44 E-value=1.8e-13 Score=137.05 Aligned_cols=113 Identities=23% Similarity=0.334 Sum_probs=72.7
Q ss_pred EEeCCHHHHHHHHHHhcCCccC--CcceEEEecC-----------------------CCCCCCeEEEeCCCccCCHHHHH
Q 002198 61 VYFKRVEDAKAAKDALQGSDFR--GNPIKIEFAR-----------------------PAKPSKHLWVGGISQTVSKEELE 115 (954)
Q Consensus 61 VeF~s~edA~~AL~~Lng~~L~--Gr~I~V~~A~-----------------------p~k~srkLfVgNLP~~vTeedL~ 115 (954)
.+|...++|..|+..+++.... |+.+...++. .....++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788899999999888876654 5555554421 12235689999999999999999
Q ss_pred hhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002198 116 EGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (954)
Q Consensus 116 elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~ 173 (954)
++|+.||.|..|.|+.+ +|+|||+|.+.++|.+||+.||+..|.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 99999999999999987 58999999999999999999999999999999999987654
No 133
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.4e-13 Score=126.12 Aligned_cols=77 Identities=23% Similarity=0.409 Sum_probs=73.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
....++|||+|||.++++++|+++|+.||.|.+|.+.+.+|+|||+|.+.++|.+|++.||+..++|+.|+|.+++.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999998865
No 134
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.44 E-value=1.2e-12 Score=122.60 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=69.8
Q ss_pred CCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEE
Q 002198 215 GPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIM 288 (954)
Q Consensus 215 ~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~s------rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs 288 (954)
....+.|+|++++ ..+++++|+++|+.||.|++|++... +|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLS-PEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3445666666666 46999999999999999999999744 6899999999999999999999999999999999
Q ss_pred EecCCCCC
Q 002198 289 FSSSELAP 296 (954)
Q Consensus 289 ~Ak~e~~~ 296 (954)
|++.+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876544
No 135
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=124.39 Aligned_cols=80 Identities=20% Similarity=0.412 Sum_probs=72.7
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCee-EEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcc----
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALD-KVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP---- 85 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~-sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~---- 85 (954)
..++++|||+|||.++|+++|+++|++||.|. +|.. ++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 56789999999999999999999999999998 8873 456799999999999999999999999999999
Q ss_pred eEEEecCCCCC
Q 002198 86 IKIEFARPAKP 96 (954)
Q Consensus 86 I~V~~A~p~k~ 96 (954)
|+|.|+++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999986543
No 136
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.44 E-value=2.8e-13 Score=123.04 Aligned_cols=78 Identities=27% Similarity=0.516 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
++++|||+|||.++++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3689999999999999999999999999999999877 6899999999999999999999999999999999998
Q ss_pred CCcc
Q 002198 170 SQPS 173 (954)
Q Consensus 170 sk~~ 173 (954)
.+..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 137
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=130.77 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=73.3
Q ss_pred CCCCCeEEEeCCCcc-CCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCC--ceeCCeEEEEEEccC
Q 002198 94 AKPSKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING--RQIGGEQLRVDFLRS 170 (954)
Q Consensus 94 ~k~srkLfVgNLP~~-vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng--~~i~Gr~I~V~~a~s 170 (954)
..++++|||+|||++ +|+++|+++|++||.|.+|.+++.+|+|||+|.+.++|.+|++.|++ ..|.|+.|+|.+++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 446889999999998 99999999999999999999999999999999999999999998864 569999999999977
Q ss_pred Ccc
Q 002198 171 QPS 173 (954)
Q Consensus 171 k~~ 173 (954)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=126.27 Aligned_cols=75 Identities=28% Similarity=0.562 Sum_probs=72.0
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
++|||+|||+++|+++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.|++..+.|+.|+|.+++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999998 9999999999999999999999999999999999998765
No 139
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.44 E-value=4.2e-13 Score=122.81 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=71.6
Q ss_pred CCCCCCCCCEEEEccCCc-CCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 13 DDKEAPPSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~-svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
.....+++++|||+|||. ++|+++|+++|+.||.|.+|.. .+|||||+|.+.++|.+|++.|++..|.|+.|+|+++
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 334466899999999998 9999999999999999999987 4899999999999999999999999999999999998
Q ss_pred CCC
Q 002198 92 RPA 94 (954)
Q Consensus 92 ~p~ 94 (954)
++.
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 140
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3e-13 Score=123.92 Aligned_cols=80 Identities=34% Similarity=0.595 Sum_probs=74.6
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|+.||.|++|.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456889999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987654
No 141
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.3e-13 Score=124.22 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
....++|||+|||+++++++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 456889999999999999999999999999999999987 579999999999999999999999999999999998
Q ss_pred cCCc
Q 002198 169 RSQP 172 (954)
Q Consensus 169 ~sk~ 172 (954)
+...
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7654
No 142
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.3e-13 Score=121.13 Aligned_cols=80 Identities=28% Similarity=0.509 Sum_probs=74.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||.++++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356789999999999999999999999999999999987 47999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
+..+..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987653
No 143
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=123.89 Aligned_cols=79 Identities=34% Similarity=0.472 Sum_probs=71.2
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
.....+.++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 334667899999999999999999999999999998883 445899999999999999999999999999999999
Q ss_pred EecC
Q 002198 89 EFAR 92 (954)
Q Consensus 89 ~~A~ 92 (954)
.+++
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9985
No 144
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.9e-13 Score=120.63 Aligned_cols=78 Identities=17% Similarity=0.413 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~ 173 (954)
....++|||+|||.++++++|+++|++||.|.+|.+. +++|||+|.+.++|.+|++.||+..+.|+.|+|.+++.+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4578899999999999999999999999999999998 89999999999999999999999999999999999987653
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.7e-13 Score=121.36 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=74.6
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
..+...+.++|||+|| ++|+++|+++|++||.|.+|.+.+++|||||+|.+.++|.+|++.|++..|.|+.|+|.|++
T Consensus 8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 3444678899999996 99999999999999999999998999999999999999999999999999999999999997
Q ss_pred CCC
Q 002198 93 PAK 95 (954)
Q Consensus 93 p~k 95 (954)
+..
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 146
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.1e-13 Score=122.29 Aligned_cols=79 Identities=20% Similarity=0.455 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEE-EEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF-KFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I-~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
...++|||+|||+++++++|+++|+.||.|.+| .++++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 99887 68999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
+..+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 147
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.43 E-value=3.6e-13 Score=130.43 Aligned_cols=83 Identities=24% Similarity=0.454 Sum_probs=74.4
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
..+..+.++|||+|||.++|+++|+++|+.||.|.+|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344667899999999999999999999999999998873 44689999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 002198 88 IEFARPAKP 96 (954)
Q Consensus 88 V~~A~p~k~ 96 (954)
|.++++...
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999986543
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=4.9e-13 Score=124.61 Aligned_cols=79 Identities=25% Similarity=0.508 Sum_probs=72.8
Q ss_pred CCCCCCEEEEccCCcC-CcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC
Q 002198 16 EAPPSSNLWVGNLSAD-TTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~s-vTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~ 94 (954)
....+++|||+|||.+ +|+++|+++|++||.|.+|.. ++|||||+|.+.++|.+|++.|++..|.|+.|+|+++++.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3456799999999999 999999999999999999988 7899999999999999999999999999999999999754
Q ss_pred CC
Q 002198 95 KP 96 (954)
Q Consensus 95 k~ 96 (954)
+.
T Consensus 101 ~~ 102 (110)
T 1wf1_A 101 KP 102 (110)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 149
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=2.3e-13 Score=123.42 Aligned_cols=79 Identities=29% Similarity=0.590 Sum_probs=72.7
Q ss_pred CCCCCEEEEccCCcCCcHHHHH----HHHhccCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 17 APPSSNLWVGNLSADTTDADLK----ELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~----e~Fs~yG~I~sV~~---gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
..++++|||+|||.++|+++|+ ++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4678999999999999999999 99999999999984 4678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002198 90 FARPAK 95 (954)
Q Consensus 90 ~A~p~k 95 (954)
|+++..
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997644
No 150
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6e-13 Score=121.54 Aligned_cols=82 Identities=33% Similarity=0.574 Sum_probs=74.1
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhcc--CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKF--GALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~y--G~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
+.....++++|||+|||.++|+++|+++|+.| |.|..|.. .+|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44456788999999999999999999999999 99998875 478999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002198 91 ARPAKP 96 (954)
Q Consensus 91 A~p~k~ 96 (954)
+++...
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 986543
No 151
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.5e-13 Score=123.82 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=75.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
....++|||+|||+++|+++|+++|++||.|.+|.+..+ +++|||+|.+.++|.+|++.||+..|.|+.|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 446889999999999999999999999999999999976 6899999999999999999999999999999999998
Q ss_pred CCccc
Q 002198 170 SQPSR 174 (954)
Q Consensus 170 sk~~~ 174 (954)
.+..+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 152
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4e-13 Score=122.38 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCCCCEEEEccCCcCCcHHHHH----HHHhccCCeeEEEecCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 17 APPSSNLWVGNLSADTTDADLK----ELFGKFGALDKVTTYSS---RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~----e~Fs~yG~I~sV~~gks---kG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
..+.++|||+|||.++|+++|+ ++|++||.|.+|....+ ++||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999 99999999999985433 8999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002198 90 FARPAK 95 (954)
Q Consensus 90 ~A~p~k 95 (954)
++++..
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 997643
No 153
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.43 E-value=1.9e-13 Score=128.98 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=71.8
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccC-CeeEEEe--cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFG-ALDKVTT--YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG-~I~sV~~--gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
....++|||+|||+++|+++|+++|+.|| .|..|.. .+++|||||+|.+.++|.+|++.|++..|.|+.|+|++++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 55678999999999999999999999999 8998885 46899999999999999999999999999999999999864
Q ss_pred C
Q 002198 94 A 94 (954)
Q Consensus 94 ~ 94 (954)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 154
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.7e-13 Score=124.21 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=75.0
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-------CCeeEEecCCHHHHHHHHHHh-CCceeCCeEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNI-NGRQIGGEQLRV 165 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-------rG~AFVeF~t~EdA~~AIe~L-ng~~i~Gr~I~V 165 (954)
....++|||+|||+.+++++|+++|+.||.|.+|.++++ +|+|||+|.+.++|.+|++.| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456889999999999999999999999999999999987 689999999999999999999 999999999999
Q ss_pred EEccCCcc
Q 002198 166 DFLRSQPS 173 (954)
Q Consensus 166 ~~a~sk~~ 173 (954)
.+++.+..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987654
No 155
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.4e-13 Score=125.45 Aligned_cols=84 Identities=30% Similarity=0.386 Sum_probs=74.0
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCe----eEEE--ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL----DKVT--TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I----~sV~--~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
......++++|||+|||.++|+++|+++|+.||.| ..+. .++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 18 SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 33445678999999999999999999999999987 3443 67889999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 002198 87 KIEFARPAKP 96 (954)
Q Consensus 87 ~V~~A~p~k~ 96 (954)
+|.|+++...
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999986543
No 156
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=124.75 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=74.0
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhc-cCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCc-cCCcceE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGK-FGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSD-FRGNPIK 87 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~-yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~-L~Gr~I~ 87 (954)
.+..++++|||+|||.++|+++|+++|+. ||.|.+|.. ++++|||||+|.+.++|.+|++.|++.. |.|+.|+
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 34567899999999999999999999999 999998873 4568999999999999999999999999 9999999
Q ss_pred EEecCCCCC
Q 002198 88 IEFARPAKP 96 (954)
Q Consensus 88 V~~A~p~k~ 96 (954)
|.++++...
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976543
No 157
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.1e-13 Score=123.62 Aligned_cols=79 Identities=29% Similarity=0.533 Sum_probs=73.7
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec---CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd---rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
....++|||+|||+++|+++|+++|++||.|.+|.+..+ +++|||+|.+.++|.+|++.||+..|.|+.|+|.+++.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 456789999999999999999999999999999999876 57999999999999999999999999999999999877
Q ss_pred Cc
Q 002198 171 QP 172 (954)
Q Consensus 171 k~ 172 (954)
..
T Consensus 99 ~~ 100 (109)
T 1x4a_A 99 GR 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 158
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.4e-13 Score=122.73 Aligned_cols=78 Identities=22% Similarity=0.473 Sum_probs=70.7
Q ss_pred CCCCCCEEEEccCCc-CCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC
Q 002198 16 EAPPSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~-svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~ 94 (954)
+..++++|||+|||. ++|+++|+++|++||.|.+|.. .+|||||+|.+.++|.+|++.|++..+.|+.|+|.++++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 467899999999998 9999999999999999999987 4899999999999999999999999999999999999754
Q ss_pred C
Q 002198 95 K 95 (954)
Q Consensus 95 k 95 (954)
.
T Consensus 84 ~ 84 (96)
T 2kvi_A 84 A 84 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.42 E-value=8.8e-14 Score=125.14 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=64.5
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccC--CeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFG--ALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG--~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
.+|||+|||.++|+++|+++|+.|| .|.+|. .++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 888776 45678999999999999999999999999999999999987
Q ss_pred CCCC
Q 002198 93 PAKP 96 (954)
Q Consensus 93 p~k~ 96 (954)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 160
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.5e-13 Score=122.87 Aligned_cols=79 Identities=22% Similarity=0.426 Sum_probs=72.3
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
...+.++|||+|||.++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 356789999999999999999999999999 999983 567999999999999999999 99999999999999
Q ss_pred EecCCCCC
Q 002198 89 EFARPAKP 96 (954)
Q Consensus 89 ~~A~p~k~ 96 (954)
.++++...
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986544
No 161
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=5.3e-13 Score=119.77 Aligned_cols=79 Identities=29% Similarity=0.519 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~ 94 (954)
.+..+.++|||+|||.++|+++|+++|++||.|.+|... ++||||+|.+.++|.+|++.|++..|.|+.|+|.++++.
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 346788999999999999999999999999999999875 569999999999999999999999999999999999765
Q ss_pred C
Q 002198 95 K 95 (954)
Q Consensus 95 k 95 (954)
.
T Consensus 82 ~ 82 (90)
T 2dnp_A 82 Q 82 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 162
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=4.2e-13 Score=122.03 Aligned_cols=79 Identities=28% Similarity=0.449 Sum_probs=73.1
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec---------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd---------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
.+.++|||+|||+++++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46789999999999999999999999999999999864 468999999999999999999999999999999
Q ss_pred EEccCCcc
Q 002198 166 DFLRSQPS 173 (954)
Q Consensus 166 ~~a~sk~~ 173 (954)
.+++....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 163
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.42 E-value=1.3e-13 Score=126.76 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=71.0
Q ss_pred CCCCCEEEEccCCc------CCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCC-
Q 002198 17 APPSSNLWVGNLSA------DTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRG- 83 (954)
Q Consensus 17 ~~~s~tLfV~NLP~------svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~G- 83 (954)
...+++|||+|||. ++++++|+++|++||.|.+|. +++++|||||+|.+.++|.+|++.|++..|.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 999999999999999999998 26689999999999999999999999999999
Q ss_pred cceEEEecCC
Q 002198 84 NPIKIEFARP 93 (954)
Q Consensus 84 r~I~V~~A~p 93 (954)
+.|+|.++.+
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999853
No 164
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.9e-13 Score=122.17 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC-----CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr-----G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
....++|||+|||+++|+++|+++|+.||.|.+|.+..++ |+|||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999999999999875 78999999999999999999999999999999998
Q ss_pred cCCc
Q 002198 169 RSQP 172 (954)
Q Consensus 169 ~sk~ 172 (954)
+.+.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7754
No 165
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=4.9e-13 Score=129.08 Aligned_cols=79 Identities=25% Similarity=0.454 Sum_probs=72.0
Q ss_pred CCCCCCEEEEccCCcCCcHHHHH----HHHhccCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLK----ELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~----e~Fs~yG~I~sV~~---gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
...++++|||+|||..+++++|+ ++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|+|..|.|+.|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 35678999999999999999876 79999999999884 578999999999999999999999999999999999
Q ss_pred EecCCC
Q 002198 89 EFARPA 94 (954)
Q Consensus 89 ~~A~p~ 94 (954)
.|++..
T Consensus 105 ~~a~~~ 110 (127)
T 2a3j_A 105 TFSETP 110 (127)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999743
No 166
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=120.24 Aligned_cols=76 Identities=20% Similarity=0.401 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 456789999999999999999999999999999999876 47999999999999999999999999999999998
Q ss_pred cc
Q 002198 168 LR 169 (954)
Q Consensus 168 a~ 169 (954)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 167
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.42 E-value=3.7e-13 Score=123.93 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=74.8
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCC---eEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGG---EQLRV 165 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~G---r~I~V 165 (954)
....++|||+|||+++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|++.||+..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345789999999999999999999999999999999988 6899999999999999999999999988 99999
Q ss_pred EEccCCccc
Q 002198 166 DFLRSQPSR 174 (954)
Q Consensus 166 ~~a~sk~~~ 174 (954)
.+++.+..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999887543
No 168
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.42 E-value=5.5e-13 Score=118.42 Aligned_cols=77 Identities=23% Similarity=0.465 Sum_probs=71.5
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
..++|||+|||+++|+++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999764 679999999999999999999999999999999998
Q ss_pred cCCc
Q 002198 169 RSQP 172 (954)
Q Consensus 169 ~sk~ 172 (954)
....
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 169
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.8e-13 Score=122.90 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=74.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.+++++ |+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999999873 6899999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
++.+..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987653
No 170
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=123.94 Aligned_cols=81 Identities=28% Similarity=0.412 Sum_probs=72.6
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE--ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT--TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~--~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
...+.++|||+|||.++|+++|+++|++||.|.-+. .++++|||||+|.+.++|.+|++.|++..|.|+.|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 467899999999999999999999999999884333 466899999999999999999999999999999999999986
Q ss_pred CCC
Q 002198 94 AKP 96 (954)
Q Consensus 94 ~k~ 96 (954)
...
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 171
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=2.1e-13 Score=123.64 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=75.4
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
......+.++|||+|||.++|+++|+++|+.||.|..+. .++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 445567889999999999999999999999999988773 5678999999999999999999999999999999999999
Q ss_pred CCCCC
Q 002198 92 RPAKP 96 (954)
Q Consensus 92 ~p~k~ 96 (954)
++...
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76543
No 172
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.42 E-value=4.8e-13 Score=133.90 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=69.4
Q ss_pred EecCCHHHHHHHHHHhCCceeC--CeEEEEEEccCCcccccCCCCCCCCCCCCccCCCCCCCCCccccccCCCCCCCCCC
Q 002198 138 VEYSRLEDAAEALKNINGRQIG--GEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSSSVGRNRDG 215 (954)
Q Consensus 138 VeF~t~EdA~~AIe~Lng~~i~--Gr~I~V~~a~sk~~~~~~~~~~~~~r~~~~~g~~~g~~~~~s~~~~~~~~~~~~~~ 215 (954)
.+|++.+||..|+..+++.... |+.+.+.+....... .+....... ...........
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~--------------------~~~~~~~s~-~~~~~~~~~~~ 69 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH--------------------SYERVRNED-DDELEPGPQRS 69 (165)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc--------------------CccccccCC-CCCCCCCCCCC
Confidence 7899999999999988876543 555554432111000 000000000 00000011123
Q ss_pred CCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEE
Q 002198 216 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 289 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~s------rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~ 289 (954)
.+.+.|||++++ ..+++++|+++|+.||.|..|.|... +|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 70 ~~~~~l~V~nLp-~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSIH-EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345666677666 46999999999999999999999743 69999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002198 290 SSSELAP 296 (954)
Q Consensus 290 Ak~e~~~ 296 (954)
++.+...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9876543
No 173
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-13 Score=126.77 Aligned_cols=79 Identities=23% Similarity=0.484 Sum_probs=71.6
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
+.+.++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 456799999999999999999999999999998873 34589999999999999999999999999999999999
Q ss_pred cCCCC
Q 002198 91 ARPAK 95 (954)
Q Consensus 91 A~p~k 95 (954)
+++..
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 97543
No 174
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.41 E-value=5.8e-13 Score=131.71 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=74.8
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
++...+.++|||+|||.++|+++|+++|+.||.|..|.+ +.++|||||+|.+.++|.+||+.|++..|.|+.|+
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 333567899999999999999999999999999998883 55789999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 002198 88 IEFARPAKP 96 (954)
Q Consensus 88 V~~A~p~k~ 96 (954)
|+|+++...
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999986544
No 175
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.41 E-value=4.9e-13 Score=127.30 Aligned_cols=81 Identities=20% Similarity=0.461 Sum_probs=73.3
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
....++++|||+|||.++|+++|+++|+.||.|.+|.+ +.++|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34567899999999999999999999999999999983 445899999999999999999999999999999999
Q ss_pred EecCCCC
Q 002198 89 EFARPAK 95 (954)
Q Consensus 89 ~~A~p~k 95 (954)
.|+++..
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9997543
No 176
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.41 E-value=6.2e-13 Score=124.76 Aligned_cols=80 Identities=29% Similarity=0.468 Sum_probs=74.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.+++++ |+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999874 6899999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
++.+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987654
No 177
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.41 E-value=4e-13 Score=119.76 Aligned_cols=76 Identities=29% Similarity=0.509 Sum_probs=69.9
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
+.++|||+|||.++|+++|+++|+.||.|.+|. .++++|||||+|.+.++|.+|+ .+++..|.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999887 3456899999999999999999 999999999999999997
Q ss_pred CCC
Q 002198 93 PAK 95 (954)
Q Consensus 93 p~k 95 (954)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 178
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.41 E-value=7.4e-13 Score=125.22 Aligned_cols=80 Identities=26% Similarity=0.513 Sum_probs=74.6
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC-----CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr-----G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
....++|||+|||+++|+++|+++|++||.|.+|.+..++ |+|||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999999999999874 89999999999999999999999999999999999
Q ss_pred cCCcc
Q 002198 169 RSQPS 173 (954)
Q Consensus 169 ~sk~~ 173 (954)
+....
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 179
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.41 E-value=3.6e-13 Score=121.65 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
....++|||+|||+.+++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 456789999999999999999999999999999999987 579999999999999999999999999999999987
Q ss_pred cC
Q 002198 169 RS 170 (954)
Q Consensus 169 ~s 170 (954)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 180
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.5e-13 Score=120.75 Aligned_cols=79 Identities=24% Similarity=0.450 Sum_probs=73.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||.++++++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 5899999999999999998 999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
+..+..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987653
No 181
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.5e-13 Score=125.09 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
....++|||+|||.++|+++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.|+|..|+|+.|+|.+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 456789999999999999999999999999999999987 7899999999999999999999999999999999987
Q ss_pred CC
Q 002198 170 SQ 171 (954)
Q Consensus 170 sk 171 (954)
.+
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 182
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=8.2e-13 Score=119.01 Aligned_cols=78 Identities=32% Similarity=0.554 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~~ 173 (954)
....++|||+|||+++++++|+++|++||.|.+|.+.+ ++|||+|.+.++|.+|++.||+..|.|+.|+|.+++.+..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 45688999999999999999999999999999999984 5999999999999999999999999999999999987653
No 183
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.41 E-value=5.7e-13 Score=123.46 Aligned_cols=80 Identities=14% Similarity=0.234 Sum_probs=72.4
Q ss_pred CCCCCCCCEEEEccCCcCC------cHHHHHHHHhccCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 002198 14 DKEAPPSSNLWVGNLSADT------TDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~sv------TE~dL~e~Fs~yG~I~sV~~----gkskG~AFVeF~s~edA~~AL~~Lng~~L~G 83 (954)
......+++|||+|||..+ |+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|+|..|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3445568999999999999 88999999999999999983 4678999999999999999999999999999
Q ss_pred c-ceEEEecCC
Q 002198 84 N-PIKIEFARP 93 (954)
Q Consensus 84 r-~I~V~~A~p 93 (954)
+ .|+|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 9 999999864
No 184
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.41 E-value=4.6e-13 Score=123.74 Aligned_cols=78 Identities=33% Similarity=0.483 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
....+.++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999998873 4568999999999999999999999999999999999
Q ss_pred ecC
Q 002198 90 FAR 92 (954)
Q Consensus 90 ~A~ 92 (954)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 185
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.9e-13 Score=122.49 Aligned_cols=80 Identities=33% Similarity=0.611 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|+.||.|.+|.++++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999886 57999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 186
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.4e-13 Score=127.31 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=71.5
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
.+....++|||+|||.++|+++|+++|+.||.|.+|.+ +.++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 33556799999999999999999999999999999883 567899999999999999999 99999999999999
Q ss_pred EecCC
Q 002198 89 EFARP 93 (954)
Q Consensus 89 ~~A~p 93 (954)
.++++
T Consensus 99 ~~a~~ 103 (114)
T 2cq4_A 99 QASQA 103 (114)
T ss_dssp EEHHH
T ss_pred EecCC
Confidence 99863
No 187
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.41 E-value=3.8e-13 Score=119.68 Aligned_cols=76 Identities=32% Similarity=0.481 Sum_probs=68.4
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
.+..+.++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|+ ++++..|.|+.|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEE
Confidence 44678899999999999999999999999999998872 556899999999999999999 56888899999999
Q ss_pred Eec
Q 002198 89 EFA 91 (954)
Q Consensus 89 ~~A 91 (954)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 188
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3.1e-13 Score=126.88 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=73.4
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
..++|||+|||+++++++|+++|++||.|.+|.+.+.+++|||+|.+.++|.+|++.||+..|.|+.|+|.|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999987653
No 189
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.41 E-value=3.7e-13 Score=123.44 Aligned_cols=77 Identities=21% Similarity=0.398 Sum_probs=69.8
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccc--eeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCc----eeCCe
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN--IEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGR----QIGGE 161 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~--Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~----~i~Gr 161 (954)
....++|||+|||+++|+++|+++|++||. |.+|++++| +|+|||+|.+.++|.+|++.||+. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 446789999999999999999999999995 678998876 579999999999999999999997 58999
Q ss_pred EEEEEEccC
Q 002198 162 QLRVDFLRS 170 (954)
Q Consensus 162 ~I~V~~a~s 170 (954)
.|.|+|+++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999875
No 190
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.6e-13 Score=122.70 Aligned_cols=83 Identities=41% Similarity=0.594 Sum_probs=73.5
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE---ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT---TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~---~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
.....++++|||+|||.++|+++|+++|++|+.|.-+. .++++|||||+|.+.++|.+|++.|++..|.|+.|+|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34467889999999999999999999999998766555 456789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002198 91 ARPAKP 96 (954)
Q Consensus 91 A~p~k~ 96 (954)
+++...
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 986554
No 191
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.41 E-value=3.1e-13 Score=130.17 Aligned_cols=82 Identities=23% Similarity=0.402 Sum_probs=73.3
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeE--EE------ecCCCcEEEEEeCCHHHHHHHHHHhcCC----c
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK--VT------TYSSRSFAFVYFKRVEDAKAAKDALQGS----D 80 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~s--V~------~gkskG~AFVeF~s~edA~~AL~~Lng~----~ 80 (954)
+......+++|||+|||+++||++|+++|++||.|.. |+ .++++|||||+|.+. +|.+|++.|++. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3444678899999999999999999999999999965 65 466899999999999 999999999999 9
Q ss_pred cCCcceEEEecCCCC
Q 002198 81 FRGNPIKIEFARPAK 95 (954)
Q Consensus 81 L~Gr~I~V~~A~p~k 95 (954)
|.|+.|+|.++++.+
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999998654
No 192
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.4e-13 Score=118.44 Aligned_cols=77 Identities=22% Similarity=0.450 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
....++|||+|||+++|+++|+++|++||.|.+|.+. +++|||+|.+.++|.+|++.||+..+.|+.|+|.+++...
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 4568899999999999999999999999999999998 4599999999999999999999999999999999998764
No 193
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.1e-13 Score=122.07 Aligned_cols=80 Identities=29% Similarity=0.404 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999999999999999999999999999999886 47999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987654
No 194
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.40 E-value=8.9e-13 Score=120.66 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=71.7
Q ss_pred CCCCCCeEEEeCCCc-cCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 93 PAKPSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 93 p~k~srkLfVgNLP~-~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
+...+++|||+|||+ ++++++|+++|+.||.|.+|.+. +|+|||+|.+.++|.+|++.||+..+.|+.|+|.+++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 355789999999998 99999999999999999999985 899999999999999999999999999999999998764
No 195
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=6e-13 Score=122.42 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=71.8
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
....+.++|||+|||.++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3456789999999999999999999999997 988873 456899999999999999999 99999999999999
Q ss_pred EecCCCCC
Q 002198 89 EFARPAKP 96 (954)
Q Consensus 89 ~~A~p~k~ 96 (954)
.++++...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99986543
No 196
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.1e-13 Score=119.46 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=71.3
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
......++|||+|||.++|+++|+++|+.| .|.+|. .++++|||||+|.+.++|.+|++ +++..|.|+.|+|.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 445678999999999999999999999999 888887 35568999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 002198 90 FARPAK 95 (954)
Q Consensus 90 ~A~p~k 95 (954)
++++..
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 997654
No 197
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5e-13 Score=124.15 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=70.6
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
.+....++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|++ +++..|.|+.|.|.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 44667899999999999999999999999999999883 5589999999999999999996 99999999999999
Q ss_pred ecC
Q 002198 90 FAR 92 (954)
Q Consensus 90 ~A~ 92 (954)
++.
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 874
No 198
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.40 E-value=8.5e-13 Score=125.67 Aligned_cols=81 Identities=26% Similarity=0.386 Sum_probs=70.2
Q ss_pred CCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEE
Q 002198 216 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 289 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~s------rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~ 289 (954)
...+.|+|++++ ..+++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 20 ~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVH-EEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCC-TTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345566666666 46999999999999999999999643 78999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002198 290 SSSELAPG 297 (954)
Q Consensus 290 Ak~e~~~g 297 (954)
++.+..+.
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98776543
No 199
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.40 E-value=6.5e-13 Score=124.12 Aligned_cols=77 Identities=29% Similarity=0.489 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
....++|||+|||+++|+++|+++|++||.|.+|.+. +|+|||+|.+.++|.+|++.|||..+.|+.|+|.+++...
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 4568899999999999999999999999999999998 8999999999999999999999999999999999988764
No 200
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6e-13 Score=120.03 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=71.2
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccc-eeEEEEeecCCeeEEecCCHHHHHHHHHHhCC-ceeCCeEEEEEEccCC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN-IEDFKFLKDGNTAFVEYSRLEDAAEALKNING-RQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~-Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng-~~i~Gr~I~V~~a~sk 171 (954)
....++|||+|||+++|+++|+++|++||. |..+.+ ..+|+|||+|.+.++|.+|++.||+ ..+.|+.|+|.+++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 456789999999999999999999999999 555554 6799999999999999999999999 9999999999999876
Q ss_pred cc
Q 002198 172 PS 173 (954)
Q Consensus 172 ~~ 173 (954)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 201
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.4e-13 Score=120.35 Aligned_cols=77 Identities=34% Similarity=0.484 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999999876 46899999999999999999999999999999999
Q ss_pred ccC
Q 002198 168 LRS 170 (954)
Q Consensus 168 a~s 170 (954)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 202
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.1e-13 Score=123.31 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCC-eeEEEec-------CCCcEEEEEeCCHHHHHHHHHHhc--CCccCCcce
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVTTY-------SSRSFAFVYFKRVEDAKAAKDALQ--GSDFRGNPI 86 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~-I~sV~~g-------kskG~AFVeF~s~edA~~AL~~Ln--g~~L~Gr~I 86 (954)
..+.++|||+|||.++|+++|+++|..||. |.+|... +++|||||+|.+.++|.+|++.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 457899999999999999999999999998 9999843 689999999999999999999896 589999999
Q ss_pred EEEecCCCCC
Q 002198 87 KIEFARPAKP 96 (954)
Q Consensus 87 ~V~~A~p~k~ 96 (954)
+|.|+++...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986543
No 203
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.7e-13 Score=122.31 Aligned_cols=79 Identities=27% Similarity=0.444 Sum_probs=70.9
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCC-eeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC-CccCCcceEEEecCCC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG-SDFRGNPIKIEFARPA 94 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~-I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng-~~L~Gr~I~V~~A~p~ 94 (954)
....++|||+|||.++|+++|+++|++||. |..+.. .++|||||+|.+.++|.+|++.|++ ..|.|+.|+|.|+++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 567899999999999999999999999999 555544 4789999999999999999999999 9999999999999865
Q ss_pred CC
Q 002198 95 KP 96 (954)
Q Consensus 95 k~ 96 (954)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 204
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.40 E-value=8.5e-13 Score=127.77 Aligned_cols=81 Identities=28% Similarity=0.410 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+||++++++++|+++|+.||.|++|.++++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 445789999999999999999999999999999999877 46899999999999999999999999999999999
Q ss_pred ccCCccc
Q 002198 168 LRSQPSR 174 (954)
Q Consensus 168 a~sk~~~ 174 (954)
++.+..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 205
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.4e-13 Score=122.57 Aligned_cols=80 Identities=25% Similarity=0.396 Sum_probs=74.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999876 57999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
++....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987643
No 206
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.40 E-value=6.6e-13 Score=123.45 Aligned_cols=79 Identities=27% Similarity=0.448 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||..+|+++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999877 58999999999999999999999999999999999
Q ss_pred ccCCc
Q 002198 168 LRSQP 172 (954)
Q Consensus 168 a~sk~ 172 (954)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 88764
No 207
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8.4e-13 Score=122.15 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=71.1
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeE-EE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK-VT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~s-V~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
.......++|||+|||+++||++|+++|+.||.|.+ |. .++++|||||+|.+.++|.+||+. ++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 344567899999999999999999999999999886 65 467899999999999999999966 99999999999
Q ss_pred EEecCCC
Q 002198 88 IEFARPA 94 (954)
Q Consensus 88 V~~A~p~ 94 (954)
|.++.+.
T Consensus 88 v~~~~~~ 94 (104)
T 1wg5_A 88 IFKSSRA 94 (104)
T ss_dssp EEEECTT
T ss_pred EEECCHH
Confidence 9988643
No 208
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.7e-12 Score=119.90 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 218 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-----RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 218 s~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~s-----rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
.+.|+|++++ ..+++++|+++|+.||.|++|++..+ +|||||+|.+.++|.+|++.|||..|+|++|.|.|++.
T Consensus 15 ~~~l~V~nlp-~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 15 GSTVFVANLD-YKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CSCEEEESCC-TTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 4445555555 35999999999999999999998753 78999999999999999999999999999999999976
Q ss_pred CCCC
Q 002198 293 ELAP 296 (954)
Q Consensus 293 e~~~ 296 (954)
....
T Consensus 94 ~~~~ 97 (114)
T 2do0_A 94 ALPK 97 (114)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 209
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.39 E-value=4.7e-13 Score=125.08 Aligned_cols=83 Identities=24% Similarity=0.428 Sum_probs=68.3
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
..+...+.++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++.+ +..|.|+.|
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 3444678899999999999999999999999999999883 567899999999999999999765 588999999
Q ss_pred EEEecCCCCC
Q 002198 87 KIEFARPAKP 96 (954)
Q Consensus 87 ~V~~A~p~k~ 96 (954)
+|.++.+...
T Consensus 97 ~V~~a~~~~~ 106 (109)
T 2rs2_A 97 DPKVAFPRRA 106 (109)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999976544
No 210
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=124.50 Aligned_cols=83 Identities=24% Similarity=0.382 Sum_probs=73.9
Q ss_pred CCCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcc
Q 002198 12 YDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (954)
Q Consensus 12 ~~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~ 85 (954)
....+..+.++|||+|||.++|+++|+++|+.||.|.+|.+ +.++|||||+|.+.++|.+|++. ++..|.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 34455778999999999999999999999999999998872 45679999999999999999977 999999999
Q ss_pred eEEEecCCCC
Q 002198 86 IKIEFARPAK 95 (954)
Q Consensus 86 I~V~~A~p~k 95 (954)
|+|.++++..
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 9999997654
No 211
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=3.6e-13 Score=122.47 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=69.9
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
.....++|||+|||.++|+++|+++|..||.|..+. .++++|||||+|.+.++|.+|++.|++..|.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 456679999999999999999999999999986332 35678999999999999999999999999999999999
Q ss_pred ecCC
Q 002198 90 FARP 93 (954)
Q Consensus 90 ~A~p 93 (954)
+++.
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9864
No 212
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=5.7e-13 Score=124.16 Aligned_cols=89 Identities=25% Similarity=0.483 Sum_probs=78.1
Q ss_pred CCcceEEEecC------CCCCCCeEEEeCCCcc-CCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhC
Q 002198 82 RGNPIKIEFAR------PAKPSKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN 154 (954)
Q Consensus 82 ~Gr~I~V~~A~------p~k~srkLfVgNLP~~-vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Ln 154 (954)
.|..|.+..+. +....++|||+|||++ +++++|+++|++||.|.+|.+ .+++|||+|.+.++|.+|++.|+
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~ 83 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGEN 83 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHT
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcC
Confidence 45666666553 2334589999999999 999999999999999999998 68999999999999999999999
Q ss_pred CceeCCeEEEEEEccCCc
Q 002198 155 GRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 155 g~~i~Gr~I~V~~a~sk~ 172 (954)
+..|.|+.|+|.+++...
T Consensus 84 g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 84 GRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCEETTEECCEEESCCCC
T ss_pred CCEECCeEEEEEECCCCC
Confidence 999999999999997654
No 213
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.39 E-value=4.9e-13 Score=120.07 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
....++|||+|||+++++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 457889999999999999999999999999999999975 5789999999999999999999999999999999987
Q ss_pred CCc
Q 002198 170 SQP 172 (954)
Q Consensus 170 sk~ 172 (954)
...
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 214
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=122.86 Aligned_cols=77 Identities=18% Similarity=0.331 Sum_probs=66.7
Q ss_pred eEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 219 KILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-----RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 219 ~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~s-----rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
+.|+|++++ .++++++|+++|+.||.|++|.+..+ +|||||+|.+.++|.+|++.|||..|+|++|.|.|++..
T Consensus 8 ~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 8 GKLFIGGLN-RETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp CEEEEECCT-TTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred CEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 445555555 35999999999999999999999754 599999999999999999999999999999999999876
Q ss_pred CCC
Q 002198 294 LAP 296 (954)
Q Consensus 294 ~~~ 296 (954)
...
T Consensus 87 ~~~ 89 (116)
T 2fy1_A 87 SFQ 89 (116)
T ss_dssp SCS
T ss_pred CCC
Confidence 543
No 215
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-13 Score=123.73 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=67.4
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
......++|||+|||.++|+++|+++|+.|| |.+|.. ++++|||||+|.+.++|.+|+ .|++..|.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3466789999999999999999999999999 999983 346899999999999999999 9999999999999
Q ss_pred EEecCCC
Q 002198 88 IEFARPA 94 (954)
Q Consensus 88 V~~A~p~ 94 (954)
|+++++.
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999754
No 216
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.6e-13 Score=122.98 Aligned_cols=78 Identities=23% Similarity=0.500 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
...++|||+|||.++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45688999999999999999999999999999999877 478999999999999999999999999999999998
Q ss_pred cCCc
Q 002198 169 RSQP 172 (954)
Q Consensus 169 ~sk~ 172 (954)
..+.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7654
No 217
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.39 E-value=6.7e-13 Score=121.23 Aligned_cols=77 Identities=21% Similarity=0.440 Sum_probs=71.5
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeE--------EEEeec------CCeeEEecCCHHHHHHHHHHhCCcee
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED--------FKFLKD------GNTAFVEYSRLEDAAEALKNINGRQI 158 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~--------I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i 158 (954)
+....++|||+|||+++++++|+++|++||.|.+ |.+..+ +|+|||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3556899999999999999999999999999999 999877 46899999999999999999999999
Q ss_pred CCeEEEEEEcc
Q 002198 159 GGEQLRVDFLR 169 (954)
Q Consensus 159 ~Gr~I~V~~a~ 169 (954)
.|+.|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 218
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.39 E-value=1e-12 Score=125.08 Aligned_cols=80 Identities=33% Similarity=0.466 Sum_probs=72.9
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
...++++|||+|||.++|+++|+++|+.||.|.+|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999998883 44789999999999999999999999999999999999
Q ss_pred cCCCC
Q 002198 91 ARPAK 95 (954)
Q Consensus 91 A~p~k 95 (954)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97543
No 219
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.39 E-value=8.5e-13 Score=121.93 Aligned_cols=77 Identities=26% Similarity=0.413 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
+....++|||+|||+.+|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456889999999999999999999999999999999976 57899999999999999999999999999999999
Q ss_pred cc
Q 002198 168 LR 169 (954)
Q Consensus 168 a~ 169 (954)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 220
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.6e-12 Score=121.59 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=72.5
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCcc------
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDF------ 81 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L------ 81 (954)
.+....+.++|||+|||.++|+++|+++|+.||.|.+|.+ +.++|||||+|.+.++|.+|++.|++..|
T Consensus 18 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 18 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred hcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3344667899999999999999999999999999998873 45689999999999999999999999999
Q ss_pred --CCcceEEEecCCC
Q 002198 82 --RGNPIKIEFARPA 94 (954)
Q Consensus 82 --~Gr~I~V~~A~p~ 94 (954)
.++.|.|.|++|.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5778999998753
No 221
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.3e-13 Score=126.79 Aligned_cols=80 Identities=26% Similarity=0.440 Sum_probs=71.4
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
+..+.++|||+|||.++|+++|+++|..||.|..|.+ ++++|||||+|.+.++|.+|++. ++..|.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 3456799999999999999999999999999998873 55689999999999999999966 9999999999999
Q ss_pred ecCCCCC
Q 002198 90 FARPAKP 96 (954)
Q Consensus 90 ~A~p~k~ 96 (954)
++++...
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9976543
No 222
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4.4e-12 Score=117.98 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=66.5
Q ss_pred ceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCC-----ceEEEEEecC
Q 002198 218 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFND-----PRITIMFSSS 292 (954)
Q Consensus 218 s~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~G-----r~I~Vs~Ak~ 292 (954)
.+.|+|++++ .++++++|+++|+.||.|++|+|..+ |||||+|.+.++|.+|++.|||..|.| +.|+|.+++.
T Consensus 15 ~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 15 ENRVVVSGLP-PSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp CCEEEEESCC-SSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 3445555555 46999999999999999999999876 999999999999999999999999999 9999999977
Q ss_pred CC
Q 002198 293 EL 294 (954)
Q Consensus 293 e~ 294 (954)
+.
T Consensus 93 ~~ 94 (108)
T 1x4c_A 93 RS 94 (108)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 223
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=9.8e-13 Score=121.19 Aligned_cols=79 Identities=22% Similarity=0.477 Sum_probs=72.6
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
+....++|||+|||+++++++|+++|+.|| |.+|.++.+ +|+|||+|.+.++|.+|+ .||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999876 578999999999999999 99999999999999
Q ss_pred EEccCCcc
Q 002198 166 DFLRSQPS 173 (954)
Q Consensus 166 ~~a~sk~~ 173 (954)
.+++.+..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 224
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.6e-12 Score=119.69 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEec
Q 002198 218 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 291 (954)
Q Consensus 218 s~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak 291 (954)
.+.|+|++++ ..+++++|+++|+.||.|++|++.. .+|||||+|.+.++|.+|++.|++ .|.|++|+|.|++
T Consensus 17 ~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 17 FTKIFVGGLP-YHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp SSEEEEECCC-SSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 4445555555 3599999999999999999999964 368999999999999999999998 8999999999997
Q ss_pred CCCCCCC
Q 002198 292 SELAPGK 298 (954)
Q Consensus 292 ~e~~~g~ 298 (954)
....+..
T Consensus 95 ~~~~~~~ 101 (116)
T 2cqd_A 95 LGAKPRS 101 (116)
T ss_dssp TTCCCCC
T ss_pred cCCCccc
Confidence 7655443
No 225
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=125.95 Aligned_cols=79 Identities=33% Similarity=0.522 Sum_probs=71.7
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
......+.++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3444678999999999999999999999999999999983 5579999999999999999999999999999999
Q ss_pred EEEec
Q 002198 87 KIEFA 91 (954)
Q Consensus 87 ~V~~A 91 (954)
+|++|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99975
No 226
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.2e-12 Score=121.47 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=74.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhC------CceeCCe
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNIN------GRQIGGE 161 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Ln------g~~i~Gr 161 (954)
....++|||+|||+++|+++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|++.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 456789999999999999999999999999999999865 6899999999999999999999 9999999
Q ss_pred EEEEEEccCCcc
Q 002198 162 QLRVDFLRSQPS 173 (954)
Q Consensus 162 ~I~V~~a~sk~~ 173 (954)
.|+|.++..+..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987653
No 227
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.38 E-value=6e-13 Score=125.27 Aligned_cols=76 Identities=28% Similarity=0.483 Sum_probs=70.6
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|++.||+..|+|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445789999999999999999999999999999999876 57999999999999999999999999999999998
Q ss_pred cc
Q 002198 168 LR 169 (954)
Q Consensus 168 a~ 169 (954)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 228
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.38 E-value=5.7e-13 Score=129.50 Aligned_cols=84 Identities=32% Similarity=0.536 Sum_probs=75.5
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
...+..+.++|||+|||.++|+++|+++|+.||.|..|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445667899999999999999999999999999999883 4578999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 002198 87 KIEFARPAKP 96 (954)
Q Consensus 87 ~V~~A~p~k~ 96 (954)
+|.|+++.+.
T Consensus 120 ~V~~a~~~~~ 129 (135)
T 2lea_A 120 RVQMARYGRP 129 (135)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999986544
No 229
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7.3e-13 Score=125.60 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=73.3
Q ss_pred CCCCCeEEE--eCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCcee-----CCeEEEEE
Q 002198 94 AKPSKHLWV--GGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI-----GGEQLRVD 166 (954)
Q Consensus 94 ~k~srkLfV--gNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i-----~Gr~I~V~ 166 (954)
..++++||| |||++++|+++|+++|++||.|++|.+..++|||||+|.+.++|++|++.|||..+ .|+.|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 456789999 77999999999999999999999999999999999999999999999999999988 68999999
Q ss_pred EccCCc
Q 002198 167 FLRSQP 172 (954)
Q Consensus 167 ~a~sk~ 172 (954)
|+....
T Consensus 102 ~a~~~p 107 (114)
T 2cq2_A 102 FVEKVQ 107 (114)
T ss_dssp EESCCC
T ss_pred ecccCc
Confidence 987654
No 230
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=7.4e-13 Score=120.64 Aligned_cols=80 Identities=20% Similarity=0.502 Sum_probs=73.9
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhcccccee-EEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeE---
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIE-DFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQ--- 162 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie-~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~--- 162 (954)
.....++|||+|||+++++++|+++|++||.|. +|.+++++ |+|||+|.+.++|.+|++.||+..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 355789999999999999999999999999999 99999875 78999999999999999999999999999
Q ss_pred -EEEEEccCCc
Q 002198 163 -LRVDFLRSQP 172 (954)
Q Consensus 163 -I~V~~a~sk~ 172 (954)
|+|.+++...
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987653
No 231
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.4e-12 Score=115.47 Aligned_cols=76 Identities=22% Similarity=0.378 Sum_probs=68.1
Q ss_pred CceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCCC
Q 002198 217 PSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 295 (954)
Q Consensus 217 ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~~ 295 (954)
+.+.|||+++ .+++++|+++|++||.|.+|.+...+|||||+|.+.++|.+|++.|||..|+|++|+|.|++.+..
T Consensus 14 ~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 14 KGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 3455666664 489999999999999999999999999999999999999999999999999999999999977644
No 232
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.5e-13 Score=120.38 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=69.5
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..++++|||+|||.++|+++|+++|++||.|.+|. .++++|||||+|.+.++|.+|++.|++..|.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45789999999999999999999999999999887 245689999999999999999999999999999999887
Q ss_pred cC
Q 002198 91 AR 92 (954)
Q Consensus 91 A~ 92 (954)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 233
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.3e-12 Score=122.06 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhcccccee--------EEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIE--------DFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie--------~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
....++|||+|||+++|+++|+++|+.||.|. .|.+..+ +|+|||+|.+.++|.+|++.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999999 6998877 579999999999999999999999999
Q ss_pred CeEEEEEEccCCcc
Q 002198 160 GEQLRVDFLRSQPS 173 (954)
Q Consensus 160 Gr~I~V~~a~sk~~ 173 (954)
|+.|+|.+++.+..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999887653
No 234
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.38 E-value=1.2e-12 Score=119.78 Aligned_cols=80 Identities=33% Similarity=0.468 Sum_probs=71.3
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeE-----EEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDK-----VTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~s-----V~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
...+.++|||+|||.++|+++|+++|+.||.|.. ...++++|||||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3557899999999999999999999999996643 3368899999999999999999997 999999999999999
Q ss_pred cCCCCC
Q 002198 91 ARPAKP 96 (954)
Q Consensus 91 A~p~k~ 96 (954)
+++...
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 986544
No 235
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.7e-12 Score=115.59 Aligned_cols=77 Identities=26% Similarity=0.472 Sum_probs=67.6
Q ss_pred CCCceEEEEcCCCCCCCCHHHHHHHHhhc--CCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 215 GPPSKILWVGYPPSVQMDEQMLHNAMILF--GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 215 ~~ps~Vlvvgn~ps~~vtEedLre~Fs~f--G~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
..+.+.|+|++++ ..+++++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|||..|+|++|+|.|++.
T Consensus 12 ~~~~~~l~V~nLp-~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 12 MSSVKILYVRNLM-LSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SSCCCEEEEESCC-TTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCCcCEEEEeCCC-CCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3445666666666 369999999999999 999999887 78999999999999999999999999999999999976
Q ss_pred CC
Q 002198 293 EL 294 (954)
Q Consensus 293 e~ 294 (954)
+.
T Consensus 89 ~~ 90 (99)
T 2cpd_A 89 VD 90 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 236
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.8e-12 Score=119.14 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=72.1
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
.+....+.++|||+|||.++|+++|+++|+.||.|..|.+ ++++|||||+|.+.++|.+|++ ++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 4555678899999999999999999999999999998873 5568999999999999999996 4678999999
Q ss_pred EEEecCCCCC
Q 002198 87 KIEFARPAKP 96 (954)
Q Consensus 87 ~V~~A~p~k~ 96 (954)
.|.++++...
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999976543
No 237
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.37 E-value=6e-13 Score=119.15 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=70.8
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
..+++|||+|||.++|+++|+++|++| .|.+|...+++|||||+|.+.++|.+|++.|++..+.|+.|+|+++..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 467999999999999999999999999 999888778999999999999999999999999999999999999853
No 238
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.37 E-value=1.3e-12 Score=118.36 Aligned_cols=80 Identities=21% Similarity=0.516 Sum_probs=73.6
Q ss_pred CCCCCeEEEeCCCccCCHHHHH----hhhccccceeEEEEee---cCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELE----EGFLKFGNIEDFKFLK---DGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~----elFskfG~Ie~I~Ilr---drG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
..++++|||+|||.++++++|+ ++|++||.|.+|.+.+ .+|+|||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4568899999999999999999 9999999999999984 48999999999999999999999999999999999
Q ss_pred EccCCcc
Q 002198 167 FLRSQPS 173 (954)
Q Consensus 167 ~a~sk~~ 173 (954)
+++.+..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9987653
No 239
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.37 E-value=2.9e-13 Score=122.28 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
.+..++|||+|||.++|+++|+++|.+||.|..+. .++++|||||+|.+.++|.+|++.|++..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 45679999999999999999999999999886433 346789999999999999999999999999999999998
Q ss_pred cC
Q 002198 91 AR 92 (954)
Q Consensus 91 A~ 92 (954)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 240
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.37 E-value=6.3e-13 Score=114.96 Aligned_cols=69 Identities=28% Similarity=0.476 Sum_probs=64.1
Q ss_pred EEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 22 NLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 22 tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
+|||+|||.++|+++|+++|++||.|.+|. .++++|||||+|.+.++|.+|++ +++..|.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999887 35578999999999999999995 9999999999999875
No 241
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.37 E-value=8.9e-13 Score=123.12 Aligned_cols=81 Identities=25% Similarity=0.492 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 92 RPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 92 ~p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
......++|||+|||..+++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.|+|..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999977 479999999999999999999999999999999
Q ss_pred EEccCCc
Q 002198 166 DFLRSQP 172 (954)
Q Consensus 166 ~~a~sk~ 172 (954)
.+++.+.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9987653
No 242
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.2e-13 Score=128.80 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=69.2
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeE---EE---ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK---VT---TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~s---V~---~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
.....+.++|||+|||+++|+++|+++|+.||.|.+ +. .++++|||||+|.+.++|.+||+ +++..|.|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 19 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp SSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 344567899999999999999999999999999854 22 46679999999999999999997 999999999999
Q ss_pred EEecC
Q 002198 88 IEFAR 92 (954)
Q Consensus 88 V~~A~ 92 (954)
|.++.
T Consensus 98 V~~a~ 102 (124)
T 1wel_A 98 VHPIT 102 (124)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99874
No 243
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.37 E-value=3.8e-13 Score=155.12 Aligned_cols=78 Identities=26% Similarity=0.471 Sum_probs=73.0
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
...++|||+||++.+|+++|+++|++||.|+.|.|+.+ +|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred cCCc
Q 002198 169 RSQP 172 (954)
Q Consensus 169 ~sk~ 172 (954)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8654
No 244
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.37 E-value=1.1e-12 Score=121.05 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=74.3
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCcee---CCeEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQI---GGEQL 163 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i---~Gr~I 163 (954)
+....++|||+|||.++++++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3556889999999999999999999999999999999886 57999999999999999999999987 88999
Q ss_pred EEEEccCCcc
Q 002198 164 RVDFLRSQPS 173 (954)
Q Consensus 164 ~V~~a~sk~~ 173 (954)
+|.++..+..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987653
No 245
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.37 E-value=1.4e-12 Score=116.87 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=71.7
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
...++|||+|||+++++++|+++|++| .|.++.+.+.+|+|||+|.+.++|.+|++.||+..+.|+.|+|.++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 457899999999999999999999999 9999999888999999999999999999999999999999999998654
No 246
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.37 E-value=6e-13 Score=117.21 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=64.0
Q ss_pred CCEEEEccCCcCC------cHHHHHHHHhccCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCc-ceEE
Q 002198 20 SSNLWVGNLSADT------TDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN-PIKI 88 (954)
Q Consensus 20 s~tLfV~NLP~sv------TE~dL~e~Fs~yG~I~sV~~----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr-~I~V 88 (954)
+++|||+|||..+ |+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|++..|.|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 78999999999999999983 46789999999999999999999999999999 8876
No 247
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1e-12 Score=122.95 Aligned_cols=78 Identities=28% Similarity=0.418 Sum_probs=72.9
Q ss_pred CCCCeEEEeCCCccCCHHHHH---hhhccccceeEEEEeecC---------CeeEEecCCHHHHHHHHHHhCCceeCCeE
Q 002198 95 KPSKHLWVGGISQTVSKEELE---EGFLKFGNIEDFKFLKDG---------NTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~---elFskfG~Ie~I~Ilrdr---------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~ 162 (954)
...++|||+|||+++++++|+ ++|++||.|.+|.+.+++ |+|||+|.+.++|.+|++.||+..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 357899999999999999999 999999999999999764 59999999999999999999999999999
Q ss_pred EEEEEccCCc
Q 002198 163 LRVDFLRSQP 172 (954)
Q Consensus 163 I~V~~a~sk~ 172 (954)
|+|.++..+.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 248
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=123.65 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=72.0
Q ss_pred CCCCCCCEEEE--ccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCcc-----CCcceE
Q 002198 15 KEAPPSSNLWV--GNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF-----RGNPIK 87 (954)
Q Consensus 15 ~~~~~s~tLfV--~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L-----~Gr~I~ 87 (954)
....++++||| +||+.++||++|+++|++||.|.+|.+..+||||||+|.+.++|.+|++.|||..| .|+.|.
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 34567899999 77999999999999999999999999878899999999999999999999999988 688999
Q ss_pred EEecCC
Q 002198 88 IEFARP 93 (954)
Q Consensus 88 V~~A~p 93 (954)
|.+++.
T Consensus 100 v~~a~~ 105 (114)
T 2cq2_A 100 LNFVEK 105 (114)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 998763
No 249
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.6e-13 Score=119.27 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=70.2
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 456889999999999999999999999999999999877 57999999999999999999999999999998866
Q ss_pred cc
Q 002198 168 LR 169 (954)
Q Consensus 168 a~ 169 (954)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 250
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.36 E-value=1.3e-12 Score=116.38 Aligned_cols=75 Identities=25% Similarity=0.445 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
..++|||+|||+++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999987 578999999999999999 999999999999999987
Q ss_pred CC
Q 002198 170 SQ 171 (954)
Q Consensus 170 sk 171 (954)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 251
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1e-12 Score=122.94 Aligned_cols=82 Identities=26% Similarity=0.369 Sum_probs=73.1
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHH---HHHhccCCeeEEEec---------CCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLK---ELFGKFGALDKVTTY---------SSRSFAFVYFKRVEDAKAAKDALQGSDF 81 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~---e~Fs~yG~I~sV~~g---------kskG~AFVeF~s~edA~~AL~~Lng~~L 81 (954)
.......++|||+|||.++|+++|+ ++|++||.|.+|.+. +++|||||+|.+.++|.+|++.|++..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3445678999999999999999999 999999999998832 3458999999999999999999999999
Q ss_pred CCcceEEEecCCCC
Q 002198 82 RGNPIKIEFARPAK 95 (954)
Q Consensus 82 ~Gr~I~V~~A~p~k 95 (954)
.|+.|+|.|+++..
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999997654
No 252
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.36 E-value=7.8e-13 Score=131.89 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=68.2
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccC--CeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFG--ALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG--~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
.+.++|||+|||.++||++|+++|+.|| .|.+|. .++++|||||+|.+.++|.+||+.|++..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3578999999999999999999999999 898887 35678999999999999999999999999999999999
Q ss_pred ecC
Q 002198 90 FAR 92 (954)
Q Consensus 90 ~A~ 92 (954)
++.
T Consensus 133 ~a~ 135 (156)
T 3n9u_C 133 PAT 135 (156)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 253
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=6.6e-13 Score=121.89 Aligned_cols=79 Identities=32% Similarity=0.584 Sum_probs=73.8
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
..++|||+|||+.+++++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4689999999999999999999999999999999977 5799999999999999999999999999999999998
Q ss_pred CCccc
Q 002198 170 SQPSR 174 (954)
Q Consensus 170 sk~~~ 174 (954)
.+...
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 87543
No 254
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.36 E-value=9.3e-13 Score=151.85 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=69.3
Q ss_pred CCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEE
Q 002198 216 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 289 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~ 289 (954)
.+.+.|||++++ ..+++++|+++|+.||.|+.|.|+. .+|||||+|.+.++|.+||+.|||..|+|+.|.|.|
T Consensus 100 ~~~~~lfV~nL~-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVN-YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344556666666 4699999999999999999999863 379999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 002198 290 SSSELAP 296 (954)
Q Consensus 290 Ak~e~~~ 296 (954)
++.....
T Consensus 179 a~~~~~~ 185 (437)
T 3pgw_S 179 ERGRTVK 185 (437)
T ss_pred eCCCCCC
Confidence 9876543
No 255
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=5e-13 Score=115.84 Aligned_cols=70 Identities=29% Similarity=0.495 Sum_probs=64.9
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
++|||+|||.++|+++|+++|++||.|.+|. .++++|||||+|.+.++|.+|++.++ ..|.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999998877 25568999999999999999998888 9999999999986
No 256
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=119.04 Aligned_cols=78 Identities=22% Similarity=0.458 Sum_probs=70.4
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec--CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd--rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
....++|||+|||+++|+++|+++|+.||.|. +.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+++.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34578999999999999999999999999986 555544 799999999999999999999999999999999998775
Q ss_pred c
Q 002198 172 P 172 (954)
Q Consensus 172 ~ 172 (954)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 257
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.8e-12 Score=120.21 Aligned_cols=80 Identities=29% Similarity=0.408 Sum_probs=72.8
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccc-eeEEEEe-------ecCCeeEEecCCHHHHHHHHHHhC--CceeCCeEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN-IEDFKFL-------KDGNTAFVEYSRLEDAAEALKNIN--GRQIGGEQL 163 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~-Ie~I~Il-------rdrG~AFVeF~t~EdA~~AIe~Ln--g~~i~Gr~I 163 (954)
....++|||+|||+++|+++|+++|+.||. |.+|.++ +.+|+|||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 347899999999999999999996 589999999
Q ss_pred EEEEccCCcc
Q 002198 164 RVDFLRSQPS 173 (954)
Q Consensus 164 ~V~~a~sk~~ 173 (954)
+|.+++.+..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 258
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=8.9e-13 Score=119.89 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|+.||.|.++.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345689999999999999999999999999988877765 57899999999999999999999999999999999
Q ss_pred ccCC
Q 002198 168 LRSQ 171 (954)
Q Consensus 168 a~sk 171 (954)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 259
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.35 E-value=3.5e-13 Score=127.96 Aligned_cols=77 Identities=26% Similarity=0.466 Sum_probs=70.5
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
.+.++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35799999999999999999999999999998873 556899999999999999999 89999999999999999
Q ss_pred CCCC
Q 002198 92 RPAK 95 (954)
Q Consensus 92 ~p~k 95 (954)
++..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7544
No 260
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.35 E-value=8.2e-13 Score=121.46 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=72.1
Q ss_pred CCCCeEEEeCCCc------cCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCC-e
Q 002198 95 KPSKHLWVGGISQ------TVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGG-E 161 (954)
Q Consensus 95 k~srkLfVgNLP~------~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~G-r 161 (954)
...++|||+|||+ ++++++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999999876 5899999999999999999999999999 9
Q ss_pred EEEEEEccCCc
Q 002198 162 QLRVDFLRSQP 172 (954)
Q Consensus 162 ~I~V~~a~sk~ 172 (954)
.|+|.++....
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999987643
No 261
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.35 E-value=4.1e-13 Score=120.74 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=65.5
Q ss_pred CeEEEeCCCccCCHHHHHhhhcccc--ceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFG--NIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG--~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
.+|||+|||+++|+++|+++|+.|| .|.+|.++.+ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999987 4689999999999999999999999999999999887
Q ss_pred CCc
Q 002198 170 SQP 172 (954)
Q Consensus 170 sk~ 172 (954)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 262
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.35 E-value=1.1e-12 Score=126.62 Aligned_cols=79 Identities=34% Similarity=0.532 Sum_probs=73.6
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
..+.++|||+|||+++++++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456889999999999999999999999999999999865 57999999999999999999999999999999999
Q ss_pred ccCCc
Q 002198 168 LRSQP 172 (954)
Q Consensus 168 a~sk~ 172 (954)
+..+.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 87654
No 263
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=1.4e-12 Score=115.74 Aligned_cols=73 Identities=22% Similarity=0.445 Sum_probs=69.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccc----c-------ceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKF----G-------NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskf----G-------~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~ 162 (954)
.+..++|||+|||+++++++|+++|++| | .|.++.+.+++|+|||+|.+.++|.+|+ .||+..+.|+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 4567899999999999999999999999 8 9999999999999999999999999999 99999999999
Q ss_pred EEEEE
Q 002198 163 LRVDF 167 (954)
Q Consensus 163 I~V~~ 167 (954)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 264
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=8.4e-13 Score=124.13 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=69.3
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCe-eEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-DKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I-~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
....+.++|||+|||.++|+++|+++|+.||.| .+|. .++++|||||+|.+.++|.+||+. ++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 346678999999999999999999999999999 6666 366899999999999999999965 999999999999
Q ss_pred EecC
Q 002198 89 EFAR 92 (954)
Q Consensus 89 ~~A~ 92 (954)
.++.
T Consensus 89 ~~a~ 92 (114)
T 2cpy_A 89 HVVT 92 (114)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9985
No 265
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.34 E-value=8.7e-13 Score=119.11 Aligned_cols=76 Identities=24% Similarity=0.294 Sum_probs=68.3
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
...++|||+|||+++|+++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45689999999999999999999999999998887764 478999999999999999999999999999999987
Q ss_pred cC
Q 002198 169 RS 170 (954)
Q Consensus 169 ~s 170 (954)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 266
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.4e-12 Score=117.09 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=68.2
Q ss_pred CCceEEEEcCCCCC-CCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 216 PPSKILWVGYPPSV-QMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~-~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
.+.+.++|++++ . .+++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.|||..|.|++|+|.|++...
T Consensus 8 ~~~~~l~V~nlp-~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLP-LKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESST-TSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCC-cccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 445666676666 3 59999999999999999999996 8999999999999999999999999999999999998765
Q ss_pred CC
Q 002198 295 AP 296 (954)
Q Consensus 295 ~~ 296 (954)
.+
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 267
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=1.7e-12 Score=115.18 Aligned_cols=73 Identities=27% Similarity=0.510 Sum_probs=69.0
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhcc----C-------CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcc
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKF----G-------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~y----G-------~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~ 85 (954)
.++.++|||+|||.++|+++|+++|+.| | .|.++...+++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 3568999999999999999999999999 8 8999998889999999999999999999 99999999999
Q ss_pred eEEEe
Q 002198 86 IKIEF 90 (954)
Q Consensus 86 I~V~~ 90 (954)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99973
No 268
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.34 E-value=4.2e-13 Score=120.16 Aligned_cols=73 Identities=33% Similarity=0.562 Sum_probs=66.4
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~ 94 (954)
++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.+ |.+|++.|++..|.|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999998883 567899999999999 99999999999999999999999754
No 269
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.5e-12 Score=120.42 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=69.7
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~ 89 (954)
......++|||+|||+++||+||+++|+.||.| +|. .++++|||||+|.+.++|.+|| ++++..|.|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 346678999999999999999999999999954 666 3567899999999999999999 689999999999999
Q ss_pred ecCCCC
Q 002198 90 FARPAK 95 (954)
Q Consensus 90 ~A~p~k 95 (954)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987544
No 270
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=2e-12 Score=124.75 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCCccCCHHHHH----hhhccccceeEEEEee---cCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELE----EGFLKFGNIEDFKFLK---DGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~----elFskfG~Ie~I~Ilr---drG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
..++++|||+||++.+++++|+ ++|++||.|.+|.+.+ .+|+|||+|.+.++|..|++.|||..|.|+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4567899999999999999876 6999999999999875 37999999999999999999999999999999999
Q ss_pred EccCCcc
Q 002198 167 FLRSQPS 173 (954)
Q Consensus 167 ~a~sk~~ 173 (954)
|++.+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987654
No 271
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=127.70 Aligned_cols=79 Identities=25% Similarity=0.472 Sum_probs=72.2
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeE--------E---EecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcc
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDK--------V---TTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~s--------V---~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~ 85 (954)
..++++|||+|||.++|+++|+++|+.||.|.. | ..++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 567899999999999999999999999998765 3 36889999999999999999999999999999999
Q ss_pred eEEEecCCCC
Q 002198 86 IKIEFARPAK 95 (954)
Q Consensus 86 I~V~~A~p~k 95 (954)
|.|.++++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997543
No 272
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=1.8e-12 Score=122.27 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=67.1
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeE-----EEEEEcc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQ-----LRVDFLR 169 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~-----I~V~~a~ 169 (954)
...++|||+|||+++|+++|+++|++||.|.+|.++.+ |+|||+|.+.++|.+||+.||+..|.|+. |+|....
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 45789999999999999999999999999999999988 99999999999999999999999999988 6666655
Q ss_pred CC
Q 002198 170 SQ 171 (954)
Q Consensus 170 sk 171 (954)
..
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 43
No 273
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=3e-12 Score=122.24 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=72.9
Q ss_pred CCCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecC
Q 002198 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (954)
Q Consensus 13 ~~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~ 92 (954)
+.....++++|||+|| ++|+++|+++|+.||.|.+|...+++|||||+|.+.++|.+|++.|++..|.|+.|+|.|++
T Consensus 32 ~~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 32 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp ---CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 3344567899999996 79999999999999999999988999999999999999999999999999999999999997
Q ss_pred CCC
Q 002198 93 PAK 95 (954)
Q Consensus 93 p~k 95 (954)
+..
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 274
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=3.3e-12 Score=114.67 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=71.8
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
+....++|||+|||+++++++|+++|+.| .|.+|.++++ +|+|||+|.+.++|.+|++ ||+..|+|+.|+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567899999999999999999999999 9999999987 5789999999999999999 999999999999999
Q ss_pred ccCCc
Q 002198 168 LRSQP 172 (954)
Q Consensus 168 a~sk~ 172 (954)
+..+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 87653
No 275
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.1e-12 Score=115.79 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=69.4
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCc-EEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRS-FAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG-~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~ 94 (954)
+....++|||+|||.++|+++|+++|+.||.|.+|...+..+ ||||+|.+.++|.+|++ |++..|.|+.|+|.++.+.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 356778999999999999999999999999999986433222 99999999999999998 9999999999999988644
Q ss_pred C
Q 002198 95 K 95 (954)
Q Consensus 95 k 95 (954)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 276
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=1.4e-12 Score=123.78 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=68.5
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCC---eeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGA---LDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~---I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
...+.++|||+|||+++||++|+++|+.||. |.+|. .++++|||||+|.+.++|.+||+ +++..|.|+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 3567899999999999999999999999998 66665 35678999999999999999997 999999999999
Q ss_pred EEecC
Q 002198 88 IEFAR 92 (954)
Q Consensus 88 V~~A~ 92 (954)
|.++.
T Consensus 92 V~~a~ 96 (118)
T 2db1_A 92 VFKSH 96 (118)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99873
No 277
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.7e-12 Score=115.83 Aligned_cols=77 Identities=34% Similarity=0.480 Sum_probs=68.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
....++|||+|||+++|+++|+++|++||.| .++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4568999999999999999999999999987 33433 789999999999999999999999999999999999
Q ss_pred cCCcc
Q 002198 169 RSQPS 173 (954)
Q Consensus 169 ~sk~~ 173 (954)
+.+..
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87643
No 278
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=5.4e-12 Score=116.01 Aligned_cols=79 Identities=23% Similarity=0.522 Sum_probs=72.4
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
+....++|||+|||+++++++|+++|+.|| |.+|.+++++ |+|||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 456688999999999999999999999997 9999999873 68999999999999999 999999999999999
Q ss_pred EccCCcc
Q 002198 167 FLRSQPS 173 (954)
Q Consensus 167 ~a~sk~~ 173 (954)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987653
No 279
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.32 E-value=3.3e-12 Score=113.57 Aligned_cols=75 Identities=21% Similarity=0.401 Sum_probs=68.7
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
.....++|||+|||+++++++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++ +++..+.|+.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999999877 4689999999999999995 58889999999998
Q ss_pred Ec
Q 002198 167 FL 168 (954)
Q Consensus 167 ~a 168 (954)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 280
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.8e-12 Score=114.03 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=70.1
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-e--cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-T--YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-~--gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
...+++|||+|||.++|+++|+++|+.||.|.+|+ . .+..+.|||+|.+.++|.+|++.|++..|.|+.|+|.++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 45679999999999999999999999999999983 3 33445699999999999999999999999999999999986
Q ss_pred C
Q 002198 94 A 94 (954)
Q Consensus 94 ~ 94 (954)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 281
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.32 E-value=1.8e-12 Score=126.64 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=69.0
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCC---eeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGA---LDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~---I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
.+..+.++|||+|||+++||++|+++|+.||. |.+|. .++++|||||+|.+.++|.+|++ +++..|.|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34567899999999999999999999999998 66665 35678999999999999999997 99999999999
Q ss_pred EEEecC
Q 002198 87 KIEFAR 92 (954)
Q Consensus 87 ~V~~A~ 92 (954)
+|.++.
T Consensus 118 ~V~~a~ 123 (136)
T 2hgl_A 118 EVFKSH 123 (136)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999863
No 282
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=119.72 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=68.4
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
....++|||+|||+++++++|+++|+.|| |.+|.+.++ +|+|||+|.+.++|.+|+ .|++..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 999999876 479999999999999999 999999999999999
Q ss_pred EccCC
Q 002198 167 FLRSQ 171 (954)
Q Consensus 167 ~a~sk 171 (954)
+++.+
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98765
No 283
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3e-12 Score=115.91 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=71.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEE-EEeecCCe--eEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF-KFLKDGNT--AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I-~IlrdrG~--AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
....++|||+|||+++++++|+++|++||.|.+| .++.++.. |||+|.+.++|.+|++.||+..|.|+.|+|.++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3457899999999999999999999999999999 58877544 99999999999999999999999999999999887
Q ss_pred C
Q 002198 171 Q 171 (954)
Q Consensus 171 k 171 (954)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 284
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.6e-12 Score=122.20 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=72.0
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccce-eEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNI-EDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~I-e~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++|+++|+++|+.||.| .+|.|+.+ +|+|||+|.+.++|.+||+. |+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4467899999999999999999999999999 88999875 68999999999999999976 99999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
+..+..
T Consensus 91 a~~~~~ 96 (114)
T 2cpy_A 91 VTLEDM 96 (114)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 987653
No 285
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=121.25 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=69.5
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCC---eeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcce
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGA---LDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~---I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I 86 (954)
.+..+.++|||+|||+++|+++|+++|+.||. |.+|. .++++|||||+|.+.++|.+||+ +++..|.|+.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 34567899999999999999999999999988 77777 35689999999999999999997 99999999999
Q ss_pred EEEecC
Q 002198 87 KIEFAR 92 (954)
Q Consensus 87 ~V~~A~ 92 (954)
+|.++.
T Consensus 85 ~V~~a~ 90 (107)
T 2lmi_A 85 EVYEIN 90 (107)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 999874
No 286
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.8e-12 Score=120.40 Aligned_cols=77 Identities=13% Similarity=0.310 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
....++|||+|||+++|+++|+++|+.||.|.+|.++++ +|+|||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 445789999999999999999999999999999999975 6899999999999999997 8999999999999987
Q ss_pred cCC
Q 002198 169 RSQ 171 (954)
Q Consensus 169 ~sk 171 (954)
...
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 764
No 287
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.31 E-value=6.5e-12 Score=124.18 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=67.9
Q ss_pred CCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEE
Q 002198 216 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 289 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~ 289 (954)
.+.+.|||++++ ..+++++|+++|+.||.|++|+|.. .+|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 37 ~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLS-FYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345556666666 4699999999999999999999953 368999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002198 290 SSSELA 295 (954)
Q Consensus 290 Ak~e~~ 295 (954)
++....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976543
No 288
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.31 E-value=3.5e-12 Score=123.02 Aligned_cols=75 Identities=36% Similarity=0.637 Sum_probs=70.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 456889999999999999999999999999999999876 68999999999999999999999999999999987
Q ss_pred c
Q 002198 168 L 168 (954)
Q Consensus 168 a 168 (954)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 289
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.31 E-value=4.2e-12 Score=120.73 Aligned_cols=79 Identities=27% Similarity=0.396 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
....++|||+||++.+++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 345789999999999999999999999999999999875 589999999999999999999999999999999998
Q ss_pred cCCc
Q 002198 169 RSQP 172 (954)
Q Consensus 169 ~sk~ 172 (954)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7754
No 290
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.31 E-value=4.5e-12 Score=118.42 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=69.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++|+++|+++|+.||.|.+|.++++ +|+|||+|.+.++|.+|++.+ +..|+|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 456789999999999999999999999999999999876 579999999999999999876 5999999999999
Q ss_pred ccCCc
Q 002198 168 LRSQP 172 (954)
Q Consensus 168 a~sk~ 172 (954)
+..+.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 88654
No 291
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.31 E-value=4.6e-12 Score=127.28 Aligned_cols=78 Identities=26% Similarity=0.370 Sum_probs=70.0
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe--cCCCcEEEEEeCCHHHHHHHHHHhcCCccCC--cceEEEecC
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT--YSSRSFAFVYFKRVEDAKAAKDALQGSDFRG--NPIKIEFAR 92 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~--gkskG~AFVeF~s~edA~~AL~~Lng~~L~G--r~I~V~~A~ 92 (954)
.....+|||+||++.+|+++|+++|++||.|.+|.+ .++++||||+|.+.++|++|++.|+|..|.| +.|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 344567899999999999999999999999999984 4467899999999999999999999999965 999999998
Q ss_pred CC
Q 002198 93 PA 94 (954)
Q Consensus 93 p~ 94 (954)
+.
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 292
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.31 E-value=3.1e-12 Score=127.51 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhcccc--ceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFG--NIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG--~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
...++|||+||++++|+++|+++|+.|| .|.+|.++.| +|||||+|.+.++|.+||+.|||..|+|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999999977 4789999999999999999999999999999999
Q ss_pred EccCCc
Q 002198 167 FLRSQP 172 (954)
Q Consensus 167 ~a~sk~ 172 (954)
++..+.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 987643
No 293
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.31 E-value=3.1e-12 Score=118.54 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=70.6
Q ss_pred CCCCeEEEeCCCccC------CHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCe-EE
Q 002198 95 KPSKHLWVGGISQTV------SKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGE-QL 163 (954)
Q Consensus 95 k~srkLfVgNLP~~v------TeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr-~I 163 (954)
...++|||+|||+.+ |+++|+++|++||.|.+|.+.+. +|+|||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 78999999999999999999843 68999999999999999999999999998 99
Q ss_pred EEEEccCC
Q 002198 164 RVDFLRSQ 171 (954)
Q Consensus 164 ~V~~a~sk 171 (954)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 294
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.2e-12 Score=118.95 Aligned_cols=79 Identities=20% Similarity=0.367 Sum_probs=72.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|++||.|.+|.+++++ |+|||+|.+.++|.+|++. ++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 4568899999999999999999999999999999999873 6899999999999999988 99999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 887653
No 295
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.5e-12 Score=119.45 Aligned_cols=76 Identities=17% Similarity=0.430 Sum_probs=71.0
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.++|||+|||+++++++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|+ .||+..|.|+.|+|.+++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 579999999999999999999999999999999865 579999999999999999 9999999999999999887
Q ss_pred Ccc
Q 002198 171 QPS 173 (954)
Q Consensus 171 k~~ 173 (954)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 654
No 296
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=5.2e-12 Score=121.49 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=68.9
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCe-eEEecCCHHHHHHHHHHhCCceeCC--eEEEEEEccCCc
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT-AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQP 172 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~-AFVeF~t~EdA~~AIe~Lng~~i~G--r~I~V~~a~sk~ 172 (954)
..|||+||++.+|+++|+++|++||.|.+|.+....|+ |||+|.+.++|..|++.|||..|.| +.|+|++++...
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 35689999999999999999999999999999876786 9999999999999999999999977 699999998764
No 297
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.30 E-value=5.9e-12 Score=122.00 Aligned_cols=78 Identities=23% Similarity=0.352 Sum_probs=70.6
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-CCe-eEEecCCHHHHHHHHHHhCCceeCC--eEEEEEEccC
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNT-AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRS 170 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-rG~-AFVeF~t~EdA~~AIe~Lng~~i~G--r~I~V~~a~s 170 (954)
...-+|||+||++.+|+++|+++|++||.|.+|.+..+ +|+ |||+|.+.++|.+|++.|||..|.| +.|+|+|++.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 34457889999999999999999999999999988765 567 9999999999999999999999987 9999999987
Q ss_pred Cc
Q 002198 171 QP 172 (954)
Q Consensus 171 k~ 172 (954)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 298
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=9.6e-12 Score=114.25 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCCCCCHHHHHHHHhh-cCCEEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCe-eCCceEEEEEe
Q 002198 218 SKILWVGYPPSVQMDEQMLHNAMIL-FGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRL-FNDPRITIMFS 290 (954)
Q Consensus 218 s~Vlvvgn~ps~~vtEedLre~Fs~-fG~V~~VkI~~-----srG~AFVeF~s~EdA~kAie~LNG~~-f~Gr~I~Vs~A 290 (954)
.+.|+|++++ ..+++++|+++|+. ||.|.+|++.. ++|||||+|.+.++|.+|++.|||.. |+|++|.|.|+
T Consensus 9 ~~~l~V~nLp-~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 9 EYSLFVGDLT-PDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCEEEECCC-TTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CcEEEEeCCC-CCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3445555555 35999999999999 99999999974 37899999999999999999999999 99999999999
Q ss_pred cCCCCC
Q 002198 291 SSELAP 296 (954)
Q Consensus 291 k~e~~~ 296 (954)
+.+...
T Consensus 88 ~~~~~~ 93 (104)
T 2dhg_A 88 IPKASR 93 (104)
T ss_dssp CCCCSC
T ss_pred cCCCcC
Confidence 766543
No 299
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.29 E-value=2.1e-12 Score=126.05 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=73.1
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCcc---eEEEecCCCCCCCeEEEeCCCccCCHHHHHhhhccccc---eeEEEEe
Q 002198 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNP---IKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGN---IEDFKFL 130 (954)
Q Consensus 57 G~AFVeF~s~edA~~AL~~Lng~~L~Gr~---I~V~~A~p~k~srkLfVgNLP~~vTeedL~elFskfG~---Ie~I~Il 130 (954)
++++.+|...+++......+-... .|.. =......+....++|||+|||+++|+++|+++|+.||. |.+|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-gg~~~g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~ 80 (136)
T 2hgl_A 2 GSSHHHHHHSSGLVPRGSHMASMT-GGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFI 80 (136)
T ss_dssp ----------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEE
T ss_pred ccccccccchHHHHhhccCCCccc-CCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEE
Confidence 566677776666665553221111 1110 01111234566889999999999999999999999999 8999998
Q ss_pred ec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 131 KD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 131 rd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
++ +|+|||+|.+.++|++|++ +|+..|+|+.|+|.++..+.
T Consensus 81 ~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 81 YTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTE 126 (136)
T ss_dssp ECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHH
T ss_pred ECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChHH
Confidence 76 4799999999999999998 99999999999999886543
No 300
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.29 E-value=3.7e-12 Score=120.92 Aligned_cols=75 Identities=20% Similarity=0.395 Sum_probs=70.4
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.++|||+|||+++|+++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|+ .||+..|.|+.|+|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 679999999999999999999999999999999887 579999999999999999 8999999999999999876
Q ss_pred Cc
Q 002198 171 QP 172 (954)
Q Consensus 171 k~ 172 (954)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 301
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2.9e-12 Score=120.46 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=67.1
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
..+.++|||+|||+++||+||+++|+.| .|.+|. .++++|||||+|.+.++|.+|| .+++..|.|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3456899999999999999999999999 788887 3567999999999999999999 89999999999999876
Q ss_pred C
Q 002198 92 R 92 (954)
Q Consensus 92 ~ 92 (954)
.
T Consensus 91 ~ 91 (109)
T 2dnn_A 91 T 91 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 302
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=6.8e-12 Score=117.29 Aligned_cols=78 Identities=21% Similarity=0.408 Sum_probs=71.4
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCcee--------CC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQI--------GG 160 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i--------~G 160 (954)
....++|||+|||+++|+++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|++.|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 446789999999999999999999999999999999987 57899999999999999999999999 57
Q ss_pred eEEEEEEccCC
Q 002198 161 EQLRVDFLRSQ 171 (954)
Q Consensus 161 r~I~V~~a~sk 171 (954)
+.|.|.|+...
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998743
No 303
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=6.8e-12 Score=117.80 Aligned_cols=76 Identities=20% Similarity=0.419 Sum_probs=70.9
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
.++|||+|||+++|+++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|++. ++..|.|+.|+|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 579999999999999999999999999999999987 47999999999999999987 99999999999999887
Q ss_pred Ccc
Q 002198 171 QPS 173 (954)
Q Consensus 171 k~~ 173 (954)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 304
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.29 E-value=1e-12 Score=128.80 Aligned_cols=114 Identities=10% Similarity=0.104 Sum_probs=69.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHhcCCccCCcceE-----EEecCCCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEe
Q 002198 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK-----IEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130 (954)
Q Consensus 56 kG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~-----V~~A~p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Il 130 (954)
+++||.+|...+.+..++..+... ..|...- -.+.......++|||+|||+++|+++|+++|++|| |++|.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 367888888888888777654433 2222221 12222345678999999999999999999999999 7799998
Q ss_pred ec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 131 KD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 131 rd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
.+ +|+|||+|.+.++|++|| .+|+..|+|+.|+|..+....
T Consensus 79 ~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 76 579999999999999999 889999999999999877654
No 305
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=2.4e-12 Score=111.48 Aligned_cols=70 Identities=19% Similarity=0.412 Sum_probs=66.1
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
++|||+|||+++++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.++ ..+.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999876 4799999999999999999999 9999999999886
No 306
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.29 E-value=2e-12 Score=111.55 Aligned_cols=69 Identities=29% Similarity=0.535 Sum_probs=63.6
Q ss_pred EEEEccCCcCCcHHHHHHHHhccCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 22 NLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 22 tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~------gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
+|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++ +++..|.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999999998873 5679999999999999999995 6889999999999875
No 307
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.29 E-value=6.9e-12 Score=121.56 Aligned_cols=77 Identities=27% Similarity=0.422 Sum_probs=68.7
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-cCCCcE-EEEEeCCHHHHHHHHHHhcCCccCC--cceEEEecCC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-YSSRSF-AFVYFKRVEDAKAAKDALQGSDFRG--NPIKIEFARP 93 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-gkskG~-AFVeF~s~edA~~AL~~Lng~~L~G--r~I~V~~A~p 93 (954)
..-..|||+||++.+|+++|+++|++||.|.+|++ .+.+|+ |||+|.+.++|.+|++.|+|..|.| +.|+|+|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 34456669999999999999999999999999883 456788 9999999999999999999999988 8999999986
Q ss_pred C
Q 002198 94 A 94 (954)
Q Consensus 94 ~ 94 (954)
.
T Consensus 106 ~ 106 (130)
T 3zzy_A 106 T 106 (130)
T ss_dssp S
T ss_pred C
Confidence 4
No 308
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.29 E-value=2.1e-12 Score=111.63 Aligned_cols=69 Identities=20% Similarity=0.397 Sum_probs=64.9
Q ss_pred eEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 99 kLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
+|||+|||+++++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++ +++..++|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999876 4799999999999999996 9999999999999875
No 309
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=7.9e-12 Score=113.10 Aligned_cols=78 Identities=26% Similarity=0.402 Sum_probs=68.2
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCC-eeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN-TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG-~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
....++|||+|||+++|+++|+++|+.||.|.+|.+.+..+ +|||+|.+.++|.+|++ |++..|.|+.|+|.++..+.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 45678999999999999999999999999999983333323 89999999999999998 99999999999999876543
No 310
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=2.8e-13 Score=127.42 Aligned_cols=80 Identities=29% Similarity=0.467 Sum_probs=72.7
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeE--------EE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDK--------VT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~s--------V~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L 81 (954)
+..++++|||+|||.++|+++|+++|++||.|.. |. .++++|||||+|.+.++|.+|++.|++..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4678899999999999999999999999999987 54 356789999999999999999999999999
Q ss_pred CCcceEEEecCCCC
Q 002198 82 RGNPIKIEFARPAK 95 (954)
Q Consensus 82 ~Gr~I~V~~A~p~k 95 (954)
.|+.|+|.++++..
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999997644
No 311
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=5.7e-12 Score=116.52 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=70.2
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeE-EEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIED-FKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~-I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++|+++|+++|+.||.|.+ |.|+.+ +|+|||+|.+.++|.+|++. ++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456789999999999999999999999999987 877755 68999999999999999987 99999999999998
Q ss_pred ccCCc
Q 002198 168 LRSQP 172 (954)
Q Consensus 168 a~sk~ 172 (954)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 76543
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=6.3e-12 Score=117.56 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccce----eEEEEee--cCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNI----EDFKFLK--DGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~I----e~I~Ilr--drG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++|+++|+++|+.||.| ..+.+.. .+|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4467899999999999999999999999998 4555443 268999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
++.+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987654
No 313
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.28 E-value=4.4e-12 Score=120.22 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccc---eeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN---IEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~---Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
....++|||+|||+++|+++|+++|+.||. |.+|.++.+ +|+|||+|.+.++|.+|++ +|+..|+|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999998 899999876 5789999999999999998 9999999999999
Q ss_pred EEccCCc
Q 002198 166 DFLRSQP 172 (954)
Q Consensus 166 ~~a~sk~ 172 (954)
.++..+.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986554
No 314
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.28 E-value=5.1e-12 Score=126.94 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=71.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec--CCeeEEecCCHHHHHHHHHHhCCceeCC--eEEEEEEcc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLR 169 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd--rG~AFVeF~t~EdA~~AIe~Lng~~i~G--r~I~V~~a~ 169 (954)
.....+|||+||++.+|+++|+++|++||.|++|.+..+ +++|||+|.+.++|++|++.|||..|.| +.|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 334567999999999999999999999999999999755 4689999999999999999999999965 999999998
Q ss_pred CCc
Q 002198 170 SQP 172 (954)
Q Consensus 170 sk~ 172 (954)
.+.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 315
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=2.6e-11 Score=116.61 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=67.7
Q ss_pred CCceE--EEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcE-EEEEeCCHHHHHHHHHHhCCCeeCC--ceEEEEEe
Q 002198 216 PPSKI--LWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNY-SFVEFRSVDEARRAKEGLQGRLFND--PRITIMFS 290 (954)
Q Consensus 216 ~ps~V--lvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~-AFVeF~s~EdA~kAie~LNG~~f~G--r~I~Vs~A 290 (954)
.++++ ++|++++ +.+++++|+++|++||.|++|.++...|| |||+|.+.++|.+|++.|||..|.| +.|+|.|+
T Consensus 21 ~ps~vl~l~V~NL~-~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNPL-YPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESCC-SCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCcC-CCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34554 4567777 57999999999999999999999765696 9999999999999999999999988 69999999
Q ss_pred cCCC
Q 002198 291 SSEL 294 (954)
Q Consensus 291 k~e~ 294 (954)
+...
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7664
No 316
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=7.8e-12 Score=114.17 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=66.5
Q ss_pred CCCCCE-EEEccCCcCCcHHH----HHHHHhcc-CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 17 APPSSN-LWVGNLSADTTDAD----LKELFGKF-GALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 17 ~~~s~t-LfV~NLP~svTE~d----L~e~Fs~y-G~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..++.+ |||+|||..+++++ |+++|++| |+|.+|. .|+|||.|.+.++|.+|+++|+|..|.||.|+|.+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 345666 99999999999988 55899999 5999993 39999999999999999999999999999999999
Q ss_pred cCCCC
Q 002198 91 ARPAK 95 (954)
Q Consensus 91 A~p~k 95 (954)
++...
T Consensus 81 A~~~s 85 (96)
T 2diu_A 81 TPKNR 85 (96)
T ss_dssp SCCSC
T ss_pred cCCCc
Confidence 97543
No 317
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.28 E-value=1.3e-12 Score=116.89 Aligned_cols=74 Identities=23% Similarity=0.464 Sum_probs=67.1
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
++|||+|||.++++++|+++|++||.|.+|.+.++ +|+|||+|.+.+ |.+|++.||+..++|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999876 578999999999 99999999999999999999998775
Q ss_pred c
Q 002198 172 P 172 (954)
Q Consensus 172 ~ 172 (954)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 318
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=122.96 Aligned_cols=78 Identities=15% Similarity=0.379 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeE--EEEeec------CCeeEEecCCHHHHHHHHHHhCCc----eeCCe
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIED--FKFLKD------GNTAFVEYSRLEDAAEALKNINGR----QIGGE 161 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~--I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~----~i~Gr 161 (954)
....++|||+|||+++|+++|+++|++||.|.. |+|+++ +|+|||+|.+. +|.+|++.||+. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345789999999999999999999999999976 899877 48999999999 999999999999 99999
Q ss_pred EEEEEEccCCc
Q 002198 162 QLRVDFLRSQP 172 (954)
Q Consensus 162 ~I~V~~a~sk~ 172 (954)
.|+|.+++...
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997754
No 319
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.27 E-value=8.9e-12 Score=126.71 Aligned_cols=77 Identities=34% Similarity=0.498 Sum_probs=71.8
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
..++++|||+|||.++|+++|+++|+.||.|..|.+ +.++|||||+|.+.++|.+|++.|++..|.|+.|+|+|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999884 567899999999999999999999999999999999998
Q ss_pred CC
Q 002198 92 RP 93 (954)
Q Consensus 92 ~p 93 (954)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 320
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.27 E-value=5.3e-12 Score=114.29 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=69.7
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEE-eecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF-LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~I-lrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
....++|||+|||+++++++|+++|+.||.|..+.. -+.+|+|||+|.+.++|.+|++.|++..|.|+.|+|.++..+.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 445789999999999999999999999999887711 1226899999999999999999999999999999999987764
No 321
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=113.17 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=64.0
Q ss_pred CCeEEEeCCCccC------CHHHHHhhhccccceeEEEEeec----CCeeEEecCCHHHHHHHHHHhCCceeCCe-EEEE
Q 002198 97 SKHLWVGGISQTV------SKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGE-QLRV 165 (954)
Q Consensus 97 srkLfVgNLP~~v------TeedL~elFskfG~Ie~I~Ilrd----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr-~I~V 165 (954)
+++|||+|||..+ ++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..+.|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3789999999999 77999999999999999998843 68999999999999999999999999999 8876
No 322
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.27 E-value=3.6e-12 Score=134.78 Aligned_cols=74 Identities=26% Similarity=0.322 Sum_probs=67.9
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccC--CeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFG--ALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG--~I~sV~------~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
..++|||+|||.++||++|+++|+.|| .|.+|. .+++||||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 678999999999999999999999999 899887 356789999999999999999999999999999999999
Q ss_pred cC
Q 002198 91 AR 92 (954)
Q Consensus 91 A~ 92 (954)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 323
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.27 E-value=2.5e-12 Score=117.65 Aligned_cols=76 Identities=17% Similarity=0.345 Sum_probs=67.8
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEee------cCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLK------DGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilr------drG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
..++|||+|||+++|+++|+++|+.||.|.. .++. .+|+|||+|.+.++|.+|++ ||+..|.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5789999999999999999999999998776 3333 37899999999999999998 99999999999999988
Q ss_pred CCcc
Q 002198 170 SQPS 173 (954)
Q Consensus 170 sk~~ 173 (954)
.+..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 324
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.27 E-value=1.3e-11 Score=116.28 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=60.9
Q ss_pred ceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCce-----EEEEEecC
Q 002198 218 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPR-----ITIMFSSS 292 (954)
Q Consensus 218 s~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~-----I~Vs~Ak~ 292 (954)
.+|+|.|++ .+++|++|+++|++||.|++|.|..+ |||||+|.+.++|++|++.|||..|+|++ |+|..++.
T Consensus 17 ~~l~V~nLp--~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 17 NRVVVSGLP--PSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp CCEEEEECC--SSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred cEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 455555554 45999999999999999999999866 99999999999999999999999999999 55555544
No 325
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.26 E-value=1e-11 Score=118.48 Aligned_cols=77 Identities=35% Similarity=0.572 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
....++|||+|| ++|+++|+++|++||.|.+|.+.+.+|+|||+|.+.++|.+|++.|++..|.|+.|+|.+++.+.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 456889999996 69999999999999999999999899999999999999999999999999999999999998764
No 326
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.26 E-value=1.4e-11 Score=111.01 Aligned_cols=76 Identities=30% Similarity=0.506 Sum_probs=61.4
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-cCCCcEEEEEeCCHHHHHHHHHHhcCCc--cCCcceEEEecC
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-YSSRSFAFVYFKRVEDAKAAKDALQGSD--FRGNPIKIEFAR 92 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-gkskG~AFVeF~s~edA~~AL~~Lng~~--L~Gr~I~V~~A~ 92 (954)
...+.++|||+|||.++||++|+++|++||.|.+|.. ..+||||||+|.+.++|.+ +++.. +.|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 3567899999999999999999999999999999994 4579999999999999984 44544 569999999987
Q ss_pred CCC
Q 002198 93 PAK 95 (954)
Q Consensus 93 p~k 95 (954)
+..
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 327
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3e-11 Score=110.88 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC------CeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr------G~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++++++|+++|+.||.|.+|.++.++ |+|||+|.+.++|.+|++ ++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4567899999999999999999999999999999999873 689999999999999998 47799999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
+..+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987643
No 328
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.25 E-value=8.1e-12 Score=120.47 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=67.1
Q ss_pred CCCCCCCEEEEccCCcCCcHHHHHHHHhccCCee--EEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALD--KVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~--sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
......++|||+|||+++||++|+++|+.| .|+ +|. .++++|||||+|.+.++|.+||+ +++..|.|+.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 345678999999999999999999999999 577 777 35679999999999999999995 578999999999
Q ss_pred EEecC
Q 002198 88 IEFAR 92 (954)
Q Consensus 88 V~~A~ 92 (954)
|..+.
T Consensus 115 V~~a~ 119 (126)
T 2hgm_A 115 VFKSS 119 (126)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98764
No 329
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=3.3e-12 Score=121.74 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=69.8
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
+....++|||+|||+++|+++|+++|+.||.|.++.++.+ +|+|||+|.+.++|.+||+ ||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999999999999999999999988544432 5799999999999999998 99999999999999
Q ss_pred EccCCc
Q 002198 167 FLRSQP 172 (954)
Q Consensus 167 ~a~sk~ 172 (954)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 330
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=110.92 Aligned_cols=77 Identities=27% Similarity=0.493 Sum_probs=68.0
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
....++|||+|||+++|+++|+++|+.|+ .|.++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999885 4555554 37999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002198 168 LRSQPS 173 (954)
Q Consensus 168 a~sk~~ 173 (954)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987653
No 331
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=8.2e-12 Score=115.54 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=68.6
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
....++|||+|||+++|+++|+++|+.||. .+|.|+.+ +|+|||+|.+.++|++|| .+|+..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 346789999999999999999999999994 49999877 468999999999999999 57999999999999987
Q ss_pred cCCc
Q 002198 169 RSQP 172 (954)
Q Consensus 169 ~sk~ 172 (954)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.24 E-value=3.5e-12 Score=125.00 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=68.9
Q ss_pred CCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEe
Q 002198 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (954)
Q Consensus 16 ~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~ 90 (954)
.....++|||+|||+++||+||+++|++|| |++|. .++++|||||+|.+.++|++|| ++++..|.|+.|+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 356778999999999999999999999999 66777 3567999999999999999999 8999999999999999
Q ss_pred cCCCCC
Q 002198 91 ARPAKP 96 (954)
Q Consensus 91 A~p~k~ 96 (954)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 875443
No 333
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.24 E-value=1.6e-11 Score=110.69 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=62.8
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCCce--eCCeEEEEEEcc
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQ--IGGEQLRVDFLR 169 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng~~--i~Gr~I~V~~a~ 169 (954)
+.....+|||+|||+++|+++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+ +++.. +.|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 4567899999999999999999999999999999999986 8999999999999984 45554 569999999987
Q ss_pred CCc
Q 002198 170 SQP 172 (954)
Q Consensus 170 sk~ 172 (954)
.+.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 334
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=5.8e-12 Score=112.47 Aligned_cols=77 Identities=29% Similarity=0.451 Sum_probs=65.4
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCCC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP 96 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k~ 96 (954)
.++++|||+|||.++|+++|+++|++||.|.+|.. ..++|||||+|.+.++|++|+. ....+.|+.|+|.++++...
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 56899999999999999999999999999999995 4579999999999999986542 13345899999999876544
No 335
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=4.7e-12 Score=121.57 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCe----eEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGAL----DKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I----~sV~-----~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
..+.++|||+|||+++||+||+++|++||.| .+|. .++++|||||+|.+.++|.+||+. ++..|.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3567999999999999999999999999975 3454 466899999999999999999964 99999999999
Q ss_pred EEec
Q 002198 88 IEFA 91 (954)
Q Consensus 88 V~~A 91 (954)
|..+
T Consensus 99 V~~a 102 (123)
T 2dha_A 99 LFRS 102 (123)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 9865
No 336
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.3e-11 Score=114.23 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=68.2
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
..+|||+|||+++|+++|+++|+.| .|.+|.|+.+ +|+|||+|.+.++|.+|+ .+|+..|+||.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 5699999999999999999999999 8999999876 689999999999999999 79999999999999887654
Q ss_pred c
Q 002198 172 P 172 (954)
Q Consensus 172 ~ 172 (954)
.
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 337
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.22 E-value=1.8e-11 Score=130.21 Aligned_cols=78 Identities=22% Similarity=0.481 Sum_probs=72.8
Q ss_pred CCCCCEEEEccCCcCC---------cHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCcc------
Q 002198 17 APPSSNLWVGNLSADT---------TDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF------ 81 (954)
Q Consensus 17 ~~~s~tLfV~NLP~sv---------TE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L------ 81 (954)
...+++|||+||+.++ ||++|+++|++||.|++|.+..++|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 5678999999999998 8999999999999999999888999999999999999999999999999
Q ss_pred ------CCcceEEEecCCC
Q 002198 82 ------RGNPIKIEFARPA 94 (954)
Q Consensus 82 ------~Gr~I~V~~A~p~ 94 (954)
.|+.|.|.|++..
T Consensus 211 e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TGGGGGGSCCCEEEECC--
T ss_pred cccccCCCCEEEEEEccCC
Confidence 8999999999754
No 338
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.22 E-value=1.6e-11 Score=119.53 Aligned_cols=81 Identities=26% Similarity=0.440 Sum_probs=71.0
Q ss_pred CCCCCCeEEEeCCCccCCHHHHHhhhccccceeEE--------EEee---cCCeeEEecCCHHHHHHHHHHhCCceeCCe
Q 002198 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF--------KFLK---DGNTAFVEYSRLEDAAEALKNINGRQIGGE 161 (954)
Q Consensus 93 p~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I--------~Ilr---drG~AFVeF~t~EdA~~AIe~Lng~~i~Gr 161 (954)
+...+++|||+|||+++|+++|+++|+.||.|..+ .+.. .+|+|||+|.+.++|.+|++.|||..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 35678999999999999999999999999988763 3332 368999999999999999999999999999
Q ss_pred EEEEEEccCCcc
Q 002198 162 QLRVDFLRSQPS 173 (954)
Q Consensus 162 ~I~V~~a~sk~~ 173 (954)
.|+|.+++....
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999977543
No 339
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.22 E-value=7.1e-12 Score=116.48 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccc---eeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN---IEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~---Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
....++|||+|||+++|+++|+++|+.||. |.+|.++.+ +|+|||+|.+.++|.+|++ +|+..|+|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 456789999999999999999999999998 899999876 5799999999999999998 9999999999999
Q ss_pred EEccCCc
Q 002198 166 DFLRSQP 172 (954)
Q Consensus 166 ~~a~sk~ 172 (954)
.++..+.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987644
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.3e-11 Score=110.15 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=65.9
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk~ 172 (954)
..+++|||+|||+++|+++|+++|++||.|.+|.++++ +|+|||+|.+.++|++|+.. ...+.|+.|+|.++..+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 46789999999999999999999999999999999877 89999999999999865321 235589999999987654
No 341
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.21 E-value=9.3e-12 Score=131.61 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhcccc--ceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFG--NIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG--~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~ 167 (954)
..++|||+||++++|+++|+++|++|| .|++|.|+++ +|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 9999999987 47899999999999999999999999999999999
Q ss_pred ccCC
Q 002198 168 LRSQ 171 (954)
Q Consensus 168 a~sk 171 (954)
++..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8764
No 342
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.21 E-value=6e-12 Score=108.58 Aligned_cols=69 Identities=20% Similarity=0.426 Sum_probs=64.1
Q ss_pred eEEEeCCCccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 99 kLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
+|||+|||+++++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999876 5799999999999999997 4889999999999874
No 343
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=2.4e-11 Score=111.02 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=66.6
Q ss_pred CCCe-EEEeCCCccCCHHH----HHhhhcccc-ceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 96 PSKH-LWVGGISQTVSKEE----LEEGFLKFG-NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 96 ~srk-LfVgNLP~~vTeed----L~elFskfG-~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
++.+ |||+|||+++++++ |+++|++|| +|.+|. .|+|||+|.+.++|.+|++.|+|..+.||.|+|.+++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 4555 99999999999888 558999995 999992 4999999999999999999999999999999999998
Q ss_pred CCcc
Q 002198 170 SQPS 173 (954)
Q Consensus 170 sk~~ 173 (954)
.+..
T Consensus 83 ~~sd 86 (96)
T 2diu_A 83 KNRE 86 (96)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 8754
No 344
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=1.6e-11 Score=130.67 Aligned_cols=80 Identities=24% Similarity=0.492 Sum_probs=72.9
Q ss_pred CCCCCeEEEeCCCccC---------CHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCcee------
Q 002198 94 AKPSKHLWVGGISQTV---------SKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI------ 158 (954)
Q Consensus 94 ~k~srkLfVgNLP~~v---------TeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i------ 158 (954)
...+++|||+||+..+ ++++|+++|++||.|++|.++.++|+|||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4568999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------CCeEEEEEEccCCcc
Q 002198 159 ------GGEQLRVDFLRSQPS 173 (954)
Q Consensus 159 ------~Gr~I~V~~a~sk~~ 173 (954)
.|+.|.|.|++....
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 345
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.20 E-value=5.9e-12 Score=115.40 Aligned_cols=76 Identities=18% Similarity=0.420 Sum_probs=68.5
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
..++++|||+|||.++|+++|+++|+.||.|.+|.. ++++|||||+|.+.++|.+|++ ++..|.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456799999999999999999999999999998873 4578999999999999999996 899999999999988
Q ss_pred CCC
Q 002198 92 RPA 94 (954)
Q Consensus 92 ~p~ 94 (954)
.+.
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 643
No 346
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.20 E-value=4.8e-11 Score=111.31 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=65.2
Q ss_pred CCceEEEEcCCCCC----CCCHHHHHHHHhhcCCEEEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCce
Q 002198 216 PPSKILWVGYPPSV----QMDEQMLHNAMILFGEIERIKSYP-------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPR 284 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~----~vtEedLre~Fs~fG~V~~VkI~~-------srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~ 284 (954)
.+++++++.|.... +.++++|+++|++||.|.+|.|.. ++|+|||+|.+.++|.+|++.|||+.|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 45677777766421 237899999999999999999863 3799999999999999999999999999999
Q ss_pred EEEEEecC
Q 002198 285 ITIMFSSS 292 (954)
Q Consensus 285 I~Vs~Ak~ 292 (954)
|.|.|+..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999965
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=3.7e-11 Score=112.84 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=68.3
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE------e---cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceE
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------T---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~------~---gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~ 87 (954)
...+++|||+|||.++|+++|+++|++||.|. +. . ++++|||||+|.+.++|.+|++.|+ .+.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 46789999999999999999999999999998 55 1 5789999999999999999999884 37788888
Q ss_pred EEecCCCCCCCeEEEe
Q 002198 88 IEFARPAKPSKHLWVG 103 (954)
Q Consensus 88 V~~A~p~k~srkLfVg 103 (954)
+..+. ....+.+.|.
T Consensus 82 ~~~~~-~~~~~~~~v~ 96 (114)
T 2dnl_A 82 CVSSP-TIKDKPVQIR 96 (114)
T ss_dssp EECCS-SSCSEEEEEE
T ss_pred eccCC-CcCCCeeecc
Confidence 77553 3334555554
No 348
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=1.9e-12 Score=121.74 Aligned_cols=80 Identities=20% Similarity=0.432 Sum_probs=73.1
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeE--------EEEeec------CCeeEEecCCHHHHHHHHHHhCCceeC
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIED--------FKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG 159 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~--------I~Ilrd------rG~AFVeF~t~EdA~~AIe~Lng~~i~ 159 (954)
..+.++|||+|||+++++++|+++|++||.|.. |.+..+ +|+|||+|.+.++|.+|++.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 888766 579999999999999999999999999
Q ss_pred CeEEEEEEccCCcc
Q 002198 160 GEQLRVDFLRSQPS 173 (954)
Q Consensus 160 Gr~I~V~~a~sk~~ 173 (954)
|+.|+|.+++.+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999887653
No 349
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.18 E-value=3e-11 Score=122.81 Aligned_cols=78 Identities=27% Similarity=0.401 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
...++|||+||++.+++++|+++|+.||.|++|.+..+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45689999999999999999999999999999999876 5899999999999999999999999999999999987
Q ss_pred CCc
Q 002198 170 SQP 172 (954)
Q Consensus 170 sk~ 172 (954)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 350
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-11 Score=116.99 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=69.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccce----eEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNI----EDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~I----e~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
.....+|||+|||+++|+++|+++|+.||.| .+|.|+.+ +|+|||+|.+.++|.+|++. |+..|+||.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3567899999999999999999999999975 68988876 57899999999999999975 99999999999
Q ss_pred EEEccCCc
Q 002198 165 VDFLRSQP 172 (954)
Q Consensus 165 V~~a~sk~ 172 (954)
|..+..+.
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 98876543
No 351
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.15 E-value=1.6e-11 Score=112.57 Aligned_cols=76 Identities=18% Similarity=0.395 Sum_probs=70.0
Q ss_pred CCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002198 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (954)
Q Consensus 95 k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~ 169 (954)
...++|||+|||+++++++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|++ ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 35689999999999999999999999999999999986 4889999999999999997 8999999999999987
Q ss_pred CCc
Q 002198 170 SQP 172 (954)
Q Consensus 170 sk~ 172 (954)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 352
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.15 E-value=1.5e-10 Score=119.23 Aligned_cols=106 Identities=12% Similarity=0.222 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHh--cCCccCCcceEEEecC--CCC----------CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEe
Q 002198 65 RVEDAKAAKDAL--QGSDFRGNPIKIEFAR--PAK----------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130 (954)
Q Consensus 65 s~edA~~AL~~L--ng~~L~Gr~I~V~~A~--p~k----------~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Il 130 (954)
+.+.+..|++.. ....+.+....|.... |.. ..++|||+|||+++|+++|+++|+.||.|..|.+.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 678888888766 4445666666665542 222 24789999999999999999999999999999998
Q ss_pred ec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 131 KD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 131 rd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
++ +|+|||+|.+.++|.+|++.++ ..+.|+.|.|.++...
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 75 5899999999999999997664 5999999999987654
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.7e-10 Score=106.73 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=66.3
Q ss_pred CCCCceEEEEcCCCCCCC----------CHHHHHHHHhhcCCEEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhCCCeeC
Q 002198 214 DGPPSKILWVGYPPSVQM----------DEQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFN 281 (954)
Q Consensus 214 ~~~ps~Vlvvgn~ps~~v----------tEedLre~Fs~fG~V~~VkI~--~srG~AFVeF~s~EdA~kAie~LNG~~f~ 281 (954)
...+++++++.|+..... .+++|+++|++||.|.+|.|. ..+|||||+|.+.++|.+|++.|||+.|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 334567777766632111 258999999999999999775 35899999999999999999999999999
Q ss_pred CceEEEEEecCCC
Q 002198 282 DPRITIMFSSSEL 294 (954)
Q Consensus 282 Gr~I~Vs~Ak~e~ 294 (954)
|++|.|.|++...
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999996654
No 354
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.13 E-value=1.4e-10 Score=108.17 Aligned_cols=79 Identities=22% Similarity=0.351 Sum_probs=65.0
Q ss_pred CCCceEEEEcCCCCC-CC--------CHHHHHHHHhhcCCEEEEEEeC--------CCcEEEEEeCCHHHHHHHHHHhCC
Q 002198 215 GPPSKILWVGYPPSV-QM--------DEQMLHNAMILFGEIERIKSYP--------SRNYSFVEFRSVDEARRAKEGLQG 277 (954)
Q Consensus 215 ~~ps~Vlvvgn~ps~-~v--------tEedLre~Fs~fG~V~~VkI~~--------srG~AFVeF~s~EdA~kAie~LNG 277 (954)
+.|++|+++.|.-.. ++ .+++|++.|++||.|++|+|.. ++|+|||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 346777777664221 22 2378999999999999999963 479999999999999999999999
Q ss_pred CeeCCceEEEEEecCC
Q 002198 278 RLFNDPRITIMFSSSE 293 (954)
Q Consensus 278 ~~f~Gr~I~Vs~Ak~e 293 (954)
+.|+||.|+|.|+..+
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998543
No 355
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.12 E-value=3.5e-11 Score=116.05 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=67.3
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhcccccee--EEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIE--DFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie--~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~ 166 (954)
....++|||+|||+++|+++|+++|+.| .|. +|.|+.+ +|+|||+|.+.++|.+|++ +++..|+||.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 4567899999999999999999999999 566 8998876 6899999999999999997 47799999999998
Q ss_pred EccCC
Q 002198 167 FLRSQ 171 (954)
Q Consensus 167 ~a~sk 171 (954)
.+..+
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87543
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.11 E-value=2.1e-10 Score=106.93 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=68.6
Q ss_pred CCCCeEEEeCCCc-----cCCHHHHHhhhccccceeEEEEeec-------CCeeEEecCCHHHHHHHHHHhCCceeCCeE
Q 002198 95 KPSKHLWVGGISQ-----TVSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (954)
Q Consensus 95 k~srkLfVgNLP~-----~vTeedL~elFskfG~Ie~I~Ilrd-------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~ 162 (954)
.++++|+|+||.. +-++++|+++|++||.|.+|.|.++ +|+|||+|.+.++|.+|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4688999999962 2378999999999999999999875 578999999999999999999999999999
Q ss_pred EEEEEccCC
Q 002198 163 LRVDFLRSQ 171 (954)
Q Consensus 163 I~V~~a~sk 171 (954)
|+|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998764
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2e-10 Score=107.60 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=70.3
Q ss_pred CCCCCCCEEEEccCCcCCc-----------HHHHHHHHhccCCeeEEEe--cCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 002198 15 KEAPPSSNLWVGNLSADTT-----------DADLKELFGKFGALDKVTT--YSSRSFAFVYFKRVEDAKAAKDALQGSDF 81 (954)
Q Consensus 15 ~~~~~s~tLfV~NLP~svT-----------E~dL~e~Fs~yG~I~sV~~--gkskG~AFVeF~s~edA~~AL~~Lng~~L 81 (954)
....++++|+|+||-...+ +++|+++|++||.|.+|.+ ..++|||||+|.+.++|.+|++.|++..|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3567899999999944332 6899999999999998874 35789999999999999999999999999
Q ss_pred CCcceEEEecCCCC
Q 002198 82 RGNPIKIEFARPAK 95 (954)
Q Consensus 82 ~Gr~I~V~~A~p~k 95 (954)
.|+.|+|.++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999987543
No 358
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.6e-10 Score=108.59 Aligned_cols=74 Identities=15% Similarity=0.323 Sum_probs=63.4
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeec---------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEE
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrd---------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~ 164 (954)
....++|||+|||+++|+++|+++|++||.|. +.++.+ +|+|||+|.+.++|.+|++.|+ .+.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35678999999999999999999999999999 766643 6899999999999999999884 47888888
Q ss_pred EEEccC
Q 002198 165 VDFLRS 170 (954)
Q Consensus 165 V~~a~s 170 (954)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 775543
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.05 E-value=2.9e-10 Score=117.10 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=66.4
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~-----gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p 93 (954)
..++|||+|||.++|+++|+++|+.||.|.+|.. +.++|||||+|.+.++|.+|++.+ +..|.|+.|.|.|++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999998873 557899999999999999999544 5689999999999753
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.03 E-value=4.4e-10 Score=107.12 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=63.9
Q ss_pred CceEEEEcCCCCC-C---CCHHHHHHHHhhcCCEEEEEEeCC----------CcEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 002198 217 PSKILWVGYPPSV-Q---MDEQMLHNAMILFGEIERIKSYPS----------RNYSFVEFRSVDEARRAKEGLQGRLFND 282 (954)
Q Consensus 217 ps~Vlvvgn~ps~-~---vtEedLre~Fs~fG~V~~VkI~~s----------rG~AFVeF~s~EdA~kAie~LNG~~f~G 282 (954)
+++|+++.|.-+. + ..+++|++.|++||.|.+|+|... +|++||+|.+.++|.+|++.|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5777777765321 1 236899999999999999998632 4899999999999999999999999999
Q ss_pred ceEEEEEecC
Q 002198 283 PRITIMFSSS 292 (954)
Q Consensus 283 r~I~Vs~Ak~ 292 (954)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 361
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.01 E-value=5.5e-10 Score=105.84 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=63.4
Q ss_pred CCceEEEEcCCCCCCC---------CHHHHHHHHhhcCCEEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhCCCeeCCce
Q 002198 216 PPSKILWVGYPPSVQM---------DEQMLHNAMILFGEIERIKSYPS--RNYSFVEFRSVDEARRAKEGLQGRLFNDPR 284 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~v---------tEedLre~Fs~fG~V~~VkI~~s--rG~AFVeF~s~EdA~kAie~LNG~~f~Gr~ 284 (954)
.+++|+++.|.-+... -+++|++.|++||.|++|.+.+. +|+|||+|.+.++|.+|++.|||+.|+|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3566776665433211 12588999999999999999754 799999999999999999999999999999
Q ss_pred EEEEEecC
Q 002198 285 ITIMFSSS 292 (954)
Q Consensus 285 I~Vs~Ak~ 292 (954)
|+|.|+..
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 99999854
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.99 E-value=1.1e-09 Score=102.05 Aligned_cols=77 Identities=16% Similarity=0.396 Sum_probs=67.8
Q ss_pred CCCCeEEEeCC--CccCC--------HHHHHhhhccccceeEEEEeec--------CCeeEEecCCHHHHHHHHHHhCCc
Q 002198 95 KPSKHLWVGGI--SQTVS--------KEELEEGFLKFGNIEDFKFLKD--------GNTAFVEYSRLEDAAEALKNINGR 156 (954)
Q Consensus 95 k~srkLfVgNL--P~~vT--------eedL~elFskfG~Ie~I~Ilrd--------rG~AFVeF~t~EdA~~AIe~Lng~ 156 (954)
.++++|.|.|+ +.++. ++||+++|++||.|.+|.|.++ +|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 44443 4689999999999999999865 588999999999999999999999
Q ss_pred eeCCeEEEEEEccCC
Q 002198 157 QIGGEQLRVDFLRSQ 171 (954)
Q Consensus 157 ~i~Gr~I~V~~a~sk 171 (954)
.++||.|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999997654
No 363
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=7e-10 Score=123.88 Aligned_cols=75 Identities=21% Similarity=0.418 Sum_probs=67.8
Q ss_pred CCCCCEEEEcc--CCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccC---Cc--ceEEE
Q 002198 17 APPSSNLWVGN--LSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR---GN--PIKIE 89 (954)
Q Consensus 17 ~~~s~tLfV~N--LP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~---Gr--~I~V~ 89 (954)
..++++|||+| |+..+||++|+++|++||+|++|.+..+||||||+|.+.++|++|++.|||..+. |+ .|.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 78899999999 5789999999999999999999998889999999999999999999999998873 44 56777
Q ss_pred ec
Q 002198 90 FA 91 (954)
Q Consensus 90 ~A 91 (954)
++
T Consensus 95 ~~ 96 (345)
T 3tht_A 95 FV 96 (345)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=7.8e-10 Score=123.51 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=69.2
Q ss_pred CCCCCeEEEeC--CCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCcee---CCe--EEEEE
Q 002198 94 AKPSKHLWVGG--ISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI---GGE--QLRVD 166 (954)
Q Consensus 94 ~k~srkLfVgN--LP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i---~Gr--~I~V~ 166 (954)
..++++|||+| |++.+|+++|+++|++||.|++|.+...||||||+|.+.++|++|++.|||+.+ .|+ .|+|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 57889999999 689999999999999999999999999999999999999999999999999977 245 68888
Q ss_pred Ecc
Q 002198 167 FLR 169 (954)
Q Consensus 167 ~a~ 169 (954)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.4e-09 Score=100.70 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHhhcCCEEEEEEe-CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCCC
Q 002198 230 QMDEQMLHNAMILFGEIERIKSY-PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 294 (954)
Q Consensus 230 ~vtEedLre~Fs~fG~V~~VkI~-~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e~ 294 (954)
.++|++|+++|++||.|.+|.+. ..+|||||+|.+.++|.+|++.+++ +.|++|+|.|++.+.
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 48999999999999999999996 6789999999999999999998554 689999999997654
No 366
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.97 E-value=3.3e-10 Score=109.16 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=63.5
Q ss_pred CEEEEccC----CcCCcHHHHHHHHhccCCeeEEE------ecCCCcEEEEEeCC----HHH----HHHHHH--HhcCCc
Q 002198 21 SNLWVGNL----SADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKR----VED----AKAAKD--ALQGSD 80 (954)
Q Consensus 21 ~tLfV~NL----P~svTE~dL~e~Fs~yG~I~sV~------~gkskG~AFVeF~s----~ed----A~~AL~--~Lng~~ 80 (954)
++|+|+|| |++++|.+|+++|+.||+|.++. +++++|||||+|.+ +++ |.+|++ .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999887 67889999999996 333 788887 679999
Q ss_pred cCCcceEEEecC
Q 002198 81 FRGNPIKIEFAR 92 (954)
Q Consensus 81 L~Gr~I~V~~A~ 92 (954)
|.|+.|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 367
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.94 E-value=8.2e-10 Score=106.40 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=65.3
Q ss_pred CeEEEeCC----CccCCHHHHHhhhccccceeEEEEeec------CCeeEEecCC----HHH----HHHHHH--HhCCce
Q 002198 98 KHLWVGGI----SQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSR----LED----AAEALK--NINGRQ 157 (954)
Q Consensus 98 rkLfVgNL----P~~vTeedL~elFskfG~Ie~I~Ilrd------rG~AFVeF~t----~Ed----A~~AIe--~Lng~~ 157 (954)
.+|||+|| ++.+++++|+++|+.||.|.+|.++.| +|+|||+|.+ .++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999988 4789999996 333 889988 789999
Q ss_pred eCCeEEEEEEccCC
Q 002198 158 IGGEQLRVDFLRSQ 171 (954)
Q Consensus 158 i~Gr~I~V~~a~sk 171 (954)
|.|+.|+|++.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999986654
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=6.1e-09 Score=96.36 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=64.9
Q ss_pred CCCCCEEEEccCC-------cCCcHHHHHHHHhccCCeeEEEe-cCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q 002198 17 APPSSNLWVGNLS-------ADTTDADLKELFGKFGALDKVTT-YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (954)
Q Consensus 17 ~~~s~tLfV~NLP-------~svTE~dL~e~Fs~yG~I~sV~~-gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V 88 (954)
....++|.|.-.. .++||++|+++|++||.|.+|.+ ++++|||||+|.+.++|.+|++.++ .+.|+.|+|
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V 84 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKI 84 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEE
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEE
Confidence 3446778777665 45899999999999999999985 6889999999999999999997744 467999999
Q ss_pred EecCCCC
Q 002198 89 EFARPAK 95 (954)
Q Consensus 89 ~~A~p~k 95 (954)
.|+++..
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9997544
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.93 E-value=2.1e-09 Score=102.46 Aligned_cols=76 Identities=20% Similarity=0.376 Sum_probs=67.1
Q ss_pred CCCeEEEeCCC--ccC---CHHHHHhhhccccceeEEEEeecC----------CeeEEecCCHHHHHHHHHHhCCceeCC
Q 002198 96 PSKHLWVGGIS--QTV---SKEELEEGFLKFGNIEDFKFLKDG----------NTAFVEYSRLEDAAEALKNINGRQIGG 160 (954)
Q Consensus 96 ~srkLfVgNLP--~~v---TeedL~elFskfG~Ie~I~Ilrdr----------G~AFVeF~t~EdA~~AIe~Lng~~i~G 160 (954)
++++|+|.|+- .++ .++||+++|++||.|.+|.|.+++ |++||+|.+.++|.+|++.|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 68899999994 222 368999999999999999998763 689999999999999999999999999
Q ss_pred eEEEEEEccCC
Q 002198 161 EQLRVDFLRSQ 171 (954)
Q Consensus 161 r~I~V~~a~sk 171 (954)
|.|+|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998653
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.93 E-value=1.4e-09 Score=101.10 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=50.9
Q ss_pred HHHHHHH-hhcCCEEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEe
Q 002198 234 QMLHNAM-ILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 290 (954)
Q Consensus 234 edLre~F-s~fG~V~~VkI~~-----srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~A 290 (954)
++|+++| ++||.|.+|++.. ++|||||+|.+.++|.+|++.|||+.|+|++|+|.|+
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3444555 9999999999974 4799999999999999999999999999999999986
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.88 E-value=9.7e-10 Score=102.18 Aligned_cols=68 Identities=25% Similarity=0.528 Sum_probs=60.2
Q ss_pred EEeCCCccCCHHHHHhhh------------ccccceeEEEEeec-----CCeeEEecCCHHHHHHHHHHhCCceeCCeEE
Q 002198 101 WVGGISQTVSKEELEEGF------------LKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQL 163 (954)
Q Consensus 101 fVgNLP~~vTeedL~elF------------skfG~Ie~I~Ilrd-----rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I 163 (954)
.+.||+..+++++|++.| ++||.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..+.||.|
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 367888888888777666 99999999999976 5899999999999999999999999999999
Q ss_pred EEEEc
Q 002198 164 RVDFL 168 (954)
Q Consensus 164 ~V~~a 168 (954)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99885
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.86 E-value=7e-09 Score=98.24 Aligned_cols=78 Identities=14% Similarity=0.269 Sum_probs=67.3
Q ss_pred CCCCCeEEEeCCCccC----------CHHHHHhhhccccceeEEEEeec--CCeeEEecCCHHHHHHHHHHhCCceeCCe
Q 002198 94 AKPSKHLWVGGISQTV----------SKEELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRLEDAAEALKNINGRQIGGE 161 (954)
Q Consensus 94 ~k~srkLfVgNLP~~v----------TeedL~elFskfG~Ie~I~Ilrd--rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr 161 (954)
..++++|.|.|+=... -++||+++|++||.|++|.+.++ +|+|||+|.+.++|.+|++.|||..|+||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3467889999983211 24688999999999999999887 69999999999999999999999999999
Q ss_pred EEEEEEccCC
Q 002198 162 QLRVDFLRSQ 171 (954)
Q Consensus 162 ~I~V~~a~sk 171 (954)
.|+|.++...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998654
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=8.2e-08 Score=91.79 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=70.4
Q ss_pred CCCCeEEEeCCCcc-CCHHHHHhhhccccceeEEEEeecCCeeEEecCC-HHHHHHHHHHhC--CceeCCeEEEEEEccC
Q 002198 95 KPSKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSR-LEDAAEALKNIN--GRQIGGEQLRVDFLRS 170 (954)
Q Consensus 95 k~srkLfVgNLP~~-vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t-~EdA~~AIe~Ln--g~~i~Gr~I~V~~a~s 170 (954)
.....|+|+||+++ +++++|+++|+.||.|..|.+.++..+|||+|.+ .++|..|++.++ +..|.|..+.++....
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 46789999999999 9999999999999999999999999999999999 899999999995 6788999999987665
Q ss_pred C
Q 002198 171 Q 171 (954)
Q Consensus 171 k 171 (954)
.
T Consensus 96 e 96 (121)
T 1owx_A 96 E 96 (121)
T ss_dssp H
T ss_pred H
Confidence 4
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=2.4e-07 Score=88.56 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=69.7
Q ss_pred CCCCCCCCEEEEccCCcC-CcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCC-HHHHHHHHHHhc--CCccCCcceEEE
Q 002198 14 DKEAPPSSNLWVGNLSAD-TTDADLKELFGKFGALDKVTTYSSRSFAFVYFKR-VEDAKAAKDALQ--GSDFRGNPIKIE 89 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~s-vTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s-~edA~~AL~~Ln--g~~L~Gr~I~V~ 89 (954)
.-.-...+.|+|+||+.+ +++++|+++|+.||.|..|........|||+|.+ .++|.+|++.++ +..|.|..++++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 344678999999999999 9999999999999999999987788899999999 899999999984 677899888887
Q ss_pred ec
Q 002198 90 FA 91 (954)
Q Consensus 90 ~A 91 (954)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=3.1e-07 Score=83.17 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecCC
Q 002198 234 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 293 (954)
Q Consensus 234 edLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~e 293 (954)
.+|.+.|+.||+|..+++..++ +||+|.+.++|.+|++ |||..++||.|+|.++++.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 5789999999999999999655 8999999999999998 9999999999999999765
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.46 E-value=2e-07 Score=97.11 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=56.7
Q ss_pred CCHHHHHHHHhhcCCEEEEEEe----------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 231 MDEQMLHNAMILFGEIERIKSY----------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 231 vtEedLre~Fs~fG~V~~VkI~----------~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
..+++|++.|++||.|.++.+. +++|++||+|.+.++|.+|++.|||+.|+||.|.+.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3567999999999999999996 4579999999999999999999999999999999999853
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=7.5e-07 Score=80.69 Aligned_cols=57 Identities=21% Similarity=0.451 Sum_probs=52.7
Q ss_pred HHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 112 EELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 112 edL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
.+|.+.|..||.|..+++..++ +||+|.+.++|.+|++ |||..++||.|+|++++..
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 6789999999999999999876 8999999999999997 9999999999999987653
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.4e-06 Score=79.32 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=51.0
Q ss_pred HHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEecC
Q 002198 234 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 292 (954)
Q Consensus 234 edLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak~ 292 (954)
.+|.+.|+.||+|..+++..++ +||+|.+.++|.+|++ |||..++||.|+|.+..+
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccCC
Confidence 4689999999999999999665 9999999999999998 999999999999988643
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=2.7e-06 Score=77.46 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=60.4
Q ss_pred CCCCeEEEeCCCcc-----CCH----HHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEE
Q 002198 95 KPSKHLWVGGISQT-----VSK----EELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (954)
Q Consensus 95 k~srkLfVgNLP~~-----vTe----edL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V 165 (954)
.+..+|+|.-++.+ +-. .+|.+.|..||.|..+++..++ +||+|.+.++|.+||+ |+|..++||.|+|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 45667788776532 222 5689999999999999999886 9999999999999997 9999999999999
Q ss_pred EEcc
Q 002198 166 DFLR 169 (954)
Q Consensus 166 ~~a~ 169 (954)
++..
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8643
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.05 E-value=1.1e-05 Score=83.88 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=56.6
Q ss_pred CCHHHHHhhhccccceeEEEEeec----------CCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002198 109 VSKEELEEGFLKFGNIEDFKFLKD----------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (954)
Q Consensus 109 vTeedL~elFskfG~Ie~I~Ilrd----------rG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~sk 171 (954)
-.+++|++.|++||.|.++.+.++ +|++||+|.+.++|.+|++.|||..+.||.|.|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 356789999999999999999843 478999999999999999999999999999999997643
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=2.7e-05 Score=72.49 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=70.5
Q ss_pred CCCCCeEEEeCCCccCCHHHHHhhhccc-----cceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002198 94 AKPSKHLWVGGISQTVSKEELEEGFLKF-----GNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (954)
Q Consensus 94 ~k~srkLfVgNLP~~vTeedL~elFskf-----G~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a 168 (954)
....++|-|-|||..+++.-|+.+++.+ |.|.+|.+..|-+.|+|+|.+..+|-+|.-.|+|..|.|+.|++.-.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 4558899999999999999999999999 99999999999999999999999999999999999999999999643
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=5.4e-05 Score=70.52 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=65.7
Q ss_pred CCceEEEEcCCCCCCCCHHHHHHHHhhc-----CCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEE
Q 002198 216 PPSKILWVGYPPSVQMDEQMLHNAMILF-----GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 289 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtEedLre~Fs~f-----G~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~ 289 (954)
.++.+-+.++++. +++..|+.+.+.+ |.|+.|.+.++.+-|+|+|.+...|-+|.-.|+|.+|.|++|++.=
T Consensus 20 ~~rtiaL~~ipDt--vndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDK--VSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTT--CCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCC--CCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4566777777775 9999999999999 9999999999999999999999999999999999999999999854
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.00053 Score=63.31 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=76.3
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhc-----cCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEec
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGK-----FGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~-----yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A 91 (954)
....++|.|.|||+++.++.|.-+|.. =|+|.+|.... +-|+|+|.+.+.|.+.| +.....|.+..|.|...
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL-~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVL-AQADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHH-TCSCCBSSSSBCEEEEC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHh-cCCcceecCeEEEEEcC
Confidence 456789999999999999999999986 25788888543 88999999999999999 55577899999999765
Q ss_pred CCCCCCCeEEEeCCCccCC
Q 002198 92 RPAKPSKHLWVGGISQTVS 110 (954)
Q Consensus 92 ~p~k~srkLfVgNLP~~vT 110 (954)
......+|++.+|++.++
T Consensus 82 -~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 82 -PPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp -CCCCCCCCCCCSCCCCCC
T ss_pred -CCCCcceEeeecCCCCCC
Confidence 466778999999998764
No 384
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=97.51 E-value=8e-05 Score=76.01 Aligned_cols=110 Identities=23% Similarity=0.455 Sum_probs=77.3
Q ss_pred ceeEeeee-cCCcceeeeEeeeccCCc-cccCC-----ceeccccccChhH-----HHHHhhhccCceEEEEcCCCCch-
Q 002198 507 FIWRGIIA-KGGTPVCRARCVPFGKGI-ESELP-----EVVNCSARTGLDM-----LAKHYAEAIGFDIVFFLPDSEDD- 573 (954)
Q Consensus 507 ~~w~g~ia-KgG~pvC~a~c~~v~k~~-~~~lP-----e~ldc~aRt~ldm-----l~kh~~~a~~~~vvff~p~s~~D- 573 (954)
..|+|.++ |-=.--++.+|+-=..++ ..-|| ..|.+|+|-.||- +++-.....++-++.-+|+..+.
T Consensus 38 ~~WqG~L~LKn~~f~v~mh~v~Gn~~l~~~~L~~~~~~~~LRItQRmRLd~~qLe~V~rRi~~~~~~cilLAlp~~~~~~ 117 (195)
T 1ow1_A 38 IVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLSEGGPPLRIAQRMRLEATQLEGVARRMTVETDYCLLLALPCGRDQE 117 (195)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECHHHHHHHSCCC---CCEEECEEEECSHHHHHHHHHHTSSTTTEEEEEEEECCSSHH
T ss_pred hhceeeeeeecchhhhEEEEEeCcHHHHHHhCCCCCCCCceeeehhhccChHHHHHHHHHHhCCCCceEEEEecCCCCch
Confidence 58999998 765555555554422222 11233 3678999988874 34444455578888889987432
Q ss_pred -h-----hhHHHHHHHhhccccceeeeecC------CceEEEeCCChhhhceeee
Q 002198 574 -F-----ASYTEFLRYLGSKNRAGVAKFDD------GTTLFLVPPSDFLSKVLKV 616 (954)
Q Consensus 574 -~-----~~y~ef~~YL~~K~Ra~v~k~~~------~~tlflVPPsdf~~~vlkv 616 (954)
. .--+.|+.||.+|+=||||-+.. ...||+-||+||+.+-|+=
T Consensus 118 d~~~q~~~L~~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPCeFs~~~L~~ 172 (195)
T 1ow1_A 118 DVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSR 172 (195)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSSHHHHHHHHH
T ss_pred hhHhhhhHHHHHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCcHHHHHHHHH
Confidence 2 12456999999999999999954 5899999999999987753
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.0012 Score=61.20 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=66.4
Q ss_pred CCCceEEEEcCCCCC-CCC--HHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEec
Q 002198 215 GPPSKILWVGYPPSV-QMD--EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 291 (954)
Q Consensus 215 ~~ps~Vlvvgn~ps~-~vt--EedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak 291 (954)
..|+.+++.++..++ ..+ .+.++++|..|+++......++-.-..|.|.+.++|.+|...|++..|+|++|+|.|+.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 346778888775543 222 25789999999999999999998899999999999999999999999999999999997
Q ss_pred CC
Q 002198 292 SE 293 (954)
Q Consensus 292 ~e 293 (954)
..
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.76 E-value=0.0024 Score=59.08 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=66.6
Q ss_pred CCCeEEEeCCCccC-C----HHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 96 PSKHLWVGGISQTV-S----KEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 96 ~srkLfVgNLP~~v-T----eedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
-.++|+|.||+.++ + ++.++++|..|+++.....++.-.-..|.|.+.++|.+|-..||+..+.|+.|+|-|+..
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 35789999998766 2 357899999999999999998877899999999999999999999999999999999873
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.31 E-value=0.0079 Score=54.52 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=52.6
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEE--ecC------CCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT--TYS------SRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~--~gk------skG~AFVeF~s~edA~~AL~~Lng~~L~G 83 (954)
++|.|++||+++||+++.+.++.+..++-.. .|+ .-.-|||.|++.+++....+..+|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 6899999999999999999999998776444 222 23569999999999999999999988753
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.20 E-value=0.015 Score=55.17 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=59.0
Q ss_pred CCCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCC-ceEEEEE
Q 002198 215 GPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFND-PRITIMF 289 (954)
Q Consensus 215 ~~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~G-r~I~Vs~ 289 (954)
...+.|.|-|++++ .-..|-.+|++||+|.+.......+...|+|.+..+|++|+. .||..|+| -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~---~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA---SASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGG---GHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHH---HHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 34678899999885 566788899999999999886678899999999999999986 59999985 5556655
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.17 E-value=0.035 Score=51.28 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=61.5
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhcc---c--cceeEEEEeecCCeeEEecCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLK---F--GNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFsk---f--G~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng~~i~Gr~I~V~~a~s 170 (954)
..++|.|.|||.+++++.|+-+|++ - |.|+++.... +.|+|+|.+.+.|++.++ -....|.+..|.|.....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 4579999999999999999999987 2 4899998876 899999999999999984 235678899999976554
Q ss_pred Cc
Q 002198 171 QP 172 (954)
Q Consensus 171 k~ 172 (954)
..
T Consensus 84 ~~ 85 (104)
T 2dhx_A 84 RA 85 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.12 E-value=0.014 Score=55.47 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=61.5
Q ss_pred CCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccCCc-ceEEEec
Q 002198 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN-PIKIEFA 91 (954)
Q Consensus 17 ~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng~~L~Gr-~I~V~~A 91 (954)
....+.|.|-|.|++. .+.|...|+.||.|.+.......+.-.|+|.+..+|.+|| ..||..|.|. .|-|.+.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 4567899999999996 5677799999999999887667899999999999999999 7899999754 5566553
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.28 E-value=0.062 Score=48.65 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=58.4
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC--------CeeEEecCCHHHHHHHHHHhCCceeCC-----eEEE
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG--------NTAFVEYSRLEDAAEALKNINGRQIGG-----EQLR 164 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr--------G~AFVeF~t~EdA~~AIe~Lng~~i~G-----r~I~ 164 (954)
.+|.|++||+.+|++++.+.++....+....+...+ ..|||.|.+.+++....+.++|..|.+ ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 589999999999999999999998887777665543 239999999999999999999997732 2334
Q ss_pred EEEccC
Q 002198 165 VDFLRS 170 (954)
Q Consensus 165 V~~a~s 170 (954)
|++|-.
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 555543
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.66 E-value=0.14 Score=46.92 Aligned_cols=61 Identities=23% Similarity=0.327 Sum_probs=48.3
Q ss_pred CCCCCCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhc
Q 002198 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQ 77 (954)
Q Consensus 14 ~~~~~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Ln 77 (954)
+.+......++| +.|+++.-.||.++|+.||.|.--++ +--.|||.|.+.+.|..|++.+.
T Consensus 10 d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 10 DLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 333556677777 99999999999999999996652223 34679999999999999997653
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.65 E-value=0.026 Score=54.30 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=56.0
Q ss_pred CCceEEEEcCCCCCCCCHHHHHHHHhhcCCEEE-EEE----------------e---CCCcEEEEEeCCHHHHHHHHHHh
Q 002198 216 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIER-IKS----------------Y---PSRNYSFVEFRSVDEARRAKEGL 275 (954)
Q Consensus 216 ~ps~Vlvvgn~ps~~vtEedLre~Fs~fG~V~~-VkI----------------~---~srG~AFVeF~s~EdA~kAie~L 275 (954)
..+.|+|-|++++ ....+-+.|++||.|.+ +.. . ...+...|+|++..+|.+|+. -
T Consensus 6 ~e~~VtVFGFp~~---~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 6 GELAILVFGYPET---MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp --CEEEEECCCGG---GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred CceEEEEEecCHH---HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 4578889999774 55667788999999876 211 1 146788999999999999986 5
Q ss_pred CCCeeCCceEEEEEecC
Q 002198 276 QGRLFNDPRITIMFSSS 292 (954)
Q Consensus 276 NG~~f~Gr~I~Vs~Ak~ 292 (954)
||+.|+|..|-|...+.
T Consensus 82 NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TTCEETTEECEEEECCH
T ss_pred CCeEeCcEEEEEEECCH
Confidence 99999999888876643
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.28 E-value=0.048 Score=49.91 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=50.6
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE--ecC------CCcEEEEEeCCHHHHHHHHHHhcCCccCC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT--TYS------SRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~--~gk------skG~AFVeF~s~edA~~AL~~Lng~~L~G 83 (954)
..+-+|.|+.||+.+||+++.+.++.+=+++-.. .++ .-.-|||.|++.++.....+..+|..|.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3467899999999999999988888765543221 111 23459999999999999999999987643
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.89 E-value=0.098 Score=47.85 Aligned_cols=55 Identities=27% Similarity=0.319 Sum_probs=44.2
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN 154 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Ln 154 (954)
...++| ++|.++...||.++|+.||.|.--+| |...|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 345556 99999999999999999994433232 35689999999999999998763
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.46 E-value=0.076 Score=51.12 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=54.7
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEE-ec-------------------CCCcEEEEEeCCHHHHHHHHHHhcC
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT-TY-------------------SSRSFAFVYFKRVEDAKAAKDALQG 78 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-~g-------------------kskG~AFVeF~s~edA~~AL~~Lng 78 (954)
....|.|-|.|++.+. .|.+.|++||.|.+-. .. ...+...|+|.+..+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 3567888899777665 5668999999987521 10 13567799999999999999 8899
Q ss_pred CccCCcceEEEec
Q 002198 79 SDFRGNPIKIEFA 91 (954)
Q Consensus 79 ~~L~Gr~I~V~~A 91 (954)
..|.|..|-|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999988888754
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.11 E-value=0.087 Score=48.33 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=43.9
Q ss_pred CeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhC
Q 002198 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN 154 (954)
Q Consensus 98 rkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Ln 154 (954)
..++| ++|.++...||.++|+.||.|. |..+ |...|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEE-ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 34556 9999999999999999999433 3333 35689999999999999998764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.94 E-value=0.26 Score=45.02 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=54.7
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecC--------CeeEEecCCHHHHHHHHHHhCCceeCC-----eE
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG--------NTAFVEYSRLEDAAEALKNINGRQIGG-----EQ 162 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~Ilrdr--------G~AFVeF~t~EdA~~AIe~Lng~~i~G-----r~ 162 (954)
.+-+|.|+.||+.+||+++.+.++..-.+....+...+ ..|||.|.+.++.....+.++|..|-+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 45689999999999999998888766554433332221 239999999999999999999987732 34
Q ss_pred EEEEEcc
Q 002198 163 LRVDFLR 169 (954)
Q Consensus 163 I~V~~a~ 169 (954)
..|++|-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4456553
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.43 E-value=0.06 Score=62.23 Aligned_cols=54 Identities=15% Similarity=0.300 Sum_probs=42.7
Q ss_pred CCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCc-EEEEEeCCHHHHHHHH
Q 002198 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRS-FAFVYFKRVEDAKAAK 73 (954)
Q Consensus 19 ~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG-~AFVeF~s~edA~~AL 73 (954)
..++|+|. .|..+++.+|.++|++||.|.++...+++| ||.|+|.+.+++.+++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHH
Confidence 57899997 699999999999999999999999766665 8999999999999777
No 400
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.13 E-value=0.2 Score=45.93 Aligned_cols=53 Identities=26% Similarity=0.434 Sum_probs=43.7
Q ss_pred CEEEEccCCcCCcHHHHHHHHhccCCeeEEE-ecCCCcEEEEEeCCHHHHHHHHHHhc
Q 002198 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT-TYSSRSFAFVYFKRVEDAKAAKDALQ 77 (954)
Q Consensus 21 ~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~-~gkskG~AFVeF~s~edA~~AL~~Ln 77 (954)
..++| +.|.++.-.||.++|+.||.|. |. + +--.|||.|.+.+.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI--DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEE--ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 34566 9999999999999999999554 43 3 34679999999999999997664
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=88.51 E-value=0.23 Score=57.42 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=43.2
Q ss_pred CCCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCC-eeEEecCCHHHHHHHHH
Q 002198 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN-TAFVEYSRLEDAAEALK 151 (954)
Q Consensus 96 ~srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG-~AFVeF~t~EdA~~AIe 151 (954)
..+.|+|. .+..+++.+|.++|++||.|.++.+.+++| +|.|||.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 35788887 688899999999999999999999999887 69999999999997764
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=67.01 E-value=13 Score=43.40 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=46.4
Q ss_pred CCCCEEEEccCCcCCcHHHHHHHHhccCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC
Q 002198 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG 78 (954)
Q Consensus 18 ~~s~tLfV~NLP~svTE~dL~e~Fs~yG~I~sV~~gkskG~AFVeF~s~edA~~AL~~Lng 78 (954)
.....++|+ +|..+...+|.+.|+.||.|+ |. --+...|||.|.+.+.|..+++.++.
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~-widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-IS-WIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EE-ECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EE-EEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 344566665 999999999999999999654 44 23556799999999999999987753
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.35 E-value=13 Score=43.33 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=44.6
Q ss_pred CCeEEEeCCCccCCHHHHHhhhccccceeEEEEeecCCeeEEecCCHHHHHHHHHHhCC
Q 002198 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING 155 (954)
Q Consensus 97 srkLfVgNLP~~vTeedL~elFskfG~Ie~I~IlrdrG~AFVeF~t~EdA~~AIe~Lng 155 (954)
...++|+ ++..+...+|.++|+.||.| +|.. -+...|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~w-iddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISW-IDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEE-CSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEE-EcCCeEEEEECCHHHHHHHHHHHHh
Confidence 3456666 88899999999999999954 3433 2457899999999999999988753
No 404
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=46.34 E-value=12 Score=41.67 Aligned_cols=55 Identities=29% Similarity=0.704 Sum_probs=37.3
Q ss_pred HHHHH-hhhccCceEEEEcCCCCchhhhHHHHHHHhhcc--ccceeeeecCCceEEEeCCChhhhce
Q 002198 550 MLAKH-YAEAIGFDIVFFLPDSEDDFASYTEFLRYLGSK--NRAGVAKFDDGTTLFLVPPSDFLSKV 613 (954)
Q Consensus 550 ml~kh-~~~a~~~~vvff~p~s~~D~~~y~ef~~YL~~K--~Ra~v~k~~~~~tlflVPPsdf~~~v 613 (954)
|-+++ ..+.....|-.|-|- .++|.-|..|+.|+.++ .++|+||+ |||-+|....
T Consensus 4 ~~~~~~~~~~~~~~ipvF~PT-~eEF~df~~Yi~~ie~~Ga~~~Gi~KI--------IPP~~W~~r~ 61 (354)
T 3dxt_A 4 MKSKANCAQNPNCNIMIFHPT-KEEFNDFDKYIAYMESQGAHRAGLAKI--------IPPKEWKARE 61 (354)
T ss_dssp -------CCCTTCCCEEECCC-TTGGGCHHHHHHHHHHTTGGGGSEEEE--------CCCTTCCSSS
T ss_pred cccCCCCCCCCCCCcceecCC-HHHHhCHHHHHHHHHhccccccCcccc--------cCcccccCcc
Confidence 33444 445567788888885 45666677777777665 59999998 9999998753
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=44.04 E-value=39 Score=28.48 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=42.3
Q ss_pred EEEcCCCCCCCCHHHHHHHHhhcC-----CEEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCceEEEEEec
Q 002198 221 LWVGYPPSVQMDEQMLHNAMILFG-----EIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 291 (954)
Q Consensus 221 lvvgn~ps~~vtEedLre~Fs~fG-----~V~~VkI~~srG~AFVeF~s~EdA~kAie~LNG~~f~Gr~I~Vs~Ak 291 (954)
++++..-...+...+|-.++..-+ .|-.|.+. ..|.||+-... .|.++++.|++..+.|+++.|+.++
T Consensus 3 ~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 3 LYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 344444333456667777776444 45677776 55888887663 4777889999999999999998764
No 406
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=33.12 E-value=19 Score=40.42 Aligned_cols=46 Identities=30% Similarity=0.683 Sum_probs=33.6
Q ss_pred hccCceEEEEcCCCCchhhhHHHHHHHhhcc--ccceeeeecCCceEEEeCCChhhh
Q 002198 557 EAIGFDIVFFLPDSEDDFASYTEFLRYLGSK--NRAGVAKFDDGTTLFLVPPSDFLS 611 (954)
Q Consensus 557 ~a~~~~vvff~p~s~~D~~~y~ef~~YL~~K--~Ra~v~k~~~~~tlflVPPsdf~~ 611 (954)
+..+-.|..|-|- .++|.-+..|+.++.++ .++|+||+ |||.+|..
T Consensus 30 ~~~~~~iPVF~PT-~EEF~Df~~YI~kIe~~gA~~~GI~KI--------IPP~~W~p 77 (381)
T 2ox0_A 30 LNPSARIMTFYPT-MEEFRNFSRYIAYIESQGAHRAGLAKV--------VPPKEWKP 77 (381)
T ss_dssp CSTTCCCEEECCC-HHHHSCHHHHHHHHHHTTGGGGSEEEE--------CCCTTCCS
T ss_pred CCCCCCCceEcCC-HHHHhCHHHHHHHHHhccccccCceee--------cCCccCCC
Confidence 3345577788884 55666667777777665 59999998 99999853
No 407
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=31.73 E-value=2e+02 Score=26.83 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=57.7
Q ss_pred HHHHHHHHhccC-CeeEEEecCCC--cEEEEEeCCHHHHHHHHHHhcCCccCCcceEEEecCCCCCCCeEEEeCCCccC-
Q 002198 34 DADLKELFGKFG-ALDKVTTYSSR--SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTV- 109 (954)
Q Consensus 34 E~dL~e~Fs~yG-~I~sV~~gksk--G~AFVeF~s~edA~~AL~~Lng~~L~Gr~I~V~~A~p~k~srkLfVgNLP~~v- 109 (954)
-.+|...|...| .|+.+...... ++.-+.+.+.+.|.++++.. | ..+... .+..-+++...
T Consensus 20 l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~~a~~~L~~~-G-----~~v~~~---------svv~v~~~d~pG 84 (144)
T 2f06_A 20 LTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN-H-----FAVNIT---------DVVGISCPNVPG 84 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHT-T-----CCEEEE---------EEEEEEEESSTT
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHHHHHHHHHHc-C-----CeEeee---------eEEEEEeCCCCc
Confidence 466777777776 46766533232 33223367888888888643 2 111111 12221333222
Q ss_pred CHHHHHhhhcccc-ceeEEEEe-ec-CCeeEEecCCHHHHHHHHHH
Q 002198 110 SKEELEEGFLKFG-NIEDFKFL-KD-GNTAFVEYSRLEDAAEALKN 152 (954)
Q Consensus 110 TeedL~elFskfG-~Ie~I~Il-rd-rG~AFVeF~t~EdA~~AIe~ 152 (954)
--.++.+.+...| .|..+... .+ +..+.+++++.+.|.++++.
T Consensus 85 vla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~ 130 (144)
T 2f06_A 85 ALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE 130 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH
Confidence 2355666666666 66554443 22 34567788888888888865
No 408
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=22.77 E-value=28 Score=38.96 Aligned_cols=41 Identities=32% Similarity=0.704 Sum_probs=27.6
Q ss_pred EEEEcCCCC--chhhhHHHHHHHhhccccceeeeecCCceEEEeCCChhhhce
Q 002198 563 IVFFLPDSE--DDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKV 613 (954)
Q Consensus 563 vvff~p~s~--~D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflVPPsdf~~~v 613 (954)
|=.|=|--| .||..|.+.|+=.|. ++|+||+ |||-+|....
T Consensus 14 ~pVF~PT~eeF~dF~~yi~~i~~~g~--~~Gi~KV--------IPPkeW~~~~ 56 (373)
T 3opt_A 14 VPVFKPTYEQFEDFYAYCKAINKYGM--KSGVVKV--------IPPKEWKDKL 56 (373)
T ss_dssp SEEECCCHHHHTCHHHHHHTTHHHHT--TSSEEEE--------CCCHHHHTTS
T ss_pred CCeeCCCHHHHhCHHHHHHHHHHhcc--ccCeEEE--------eCchhhhhcc
Confidence 334555332 255666666655565 7999998 9999998774
Done!