BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002199
(954 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIAD 781
L K+ GNE F+ G Y +A++HYT A+ N P A + NRAA L + A+ D
Sbjct: 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 782 CSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
C + L+ + K +R+AA E ++DYT+A Q+ + +
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMR 509
M + +GN+ ++ + +A YT+ I P YSNRAA L +
Sbjct: 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL----------YSNRAACYTKLLEFQ 67
Query: 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569
AL+DC ++P F+K Y R A + + A Y K L+ LD EA
Sbjct: 68 LALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD------LDSSCK-EA 120
Query: 570 ADGLQK 575
ADG Q+
Sbjct: 121 ADGYQR 126
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K+ GNE FK G Y A+ HY A+ + E+ AI + NRAA L L + A+ DC
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDT 72
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQA 812
+ LD + K R+AA +R++++A
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKA 100
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALE 513
+GN+ +K + A Y + + P E A + YSNRAA L + AL+
Sbjct: 19 KGNEYFKKGDYPTAMRHYNEAVKRDP--ENA--------ILYSNRAACLTKLMEFQRALD 68
Query: 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
DC +D F+K Y+R A C + + E AQ Y L
Sbjct: 69 DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K+ GNE K + AV Y A+ N P A+ FCNRAAA LG A A+ DC
Sbjct: 16 KTEGNEQMKVENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 785 AMALDENYTKAVSR 798
A+ +D Y+KA R
Sbjct: 72 AICIDPAYSKAYGR 85
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 440 PTAAFQETCEMWRLR--GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSN 497
P + +++ E RL+ GN+ K N A FY + I P + C N
Sbjct: 2 PLGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFC----------N 51
Query: 498 RAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
RAA LG A++DC A +DP + K Y R L + A YY K L
Sbjct: 52 RAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 93/424 (21%), Positives = 166/424 (39%), Gaps = 90/424 (21%)
Query: 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVL--GEIENAQHYYH 550
+ Y RA +++G+ + AL D + +F R + HL+L G+++ A+ +
Sbjct: 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA--RLQRGHLLLKQGKLDEAEDDFK 118
Query: 551 KLLNSAAAVCLDRRIT--IEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEA 608
K+L S + ++ + +D +Q+ + ++ +N G S ++A+ +++
Sbjct: 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLR--SQALNAFG-------SGDYTAAIAFLDKI 169
Query: 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA-DNGSVTYSLARL 667
L + +L E++A+ I+ E +++ AS L DN Y ++ L
Sbjct: 170 LEVCVWDAELRELRAECF---------IKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220
Query: 668 WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS- 726
Y+ +G E++L SE+ E R H+K
Sbjct: 221 ---------YYQLGDHELSL-----------------SEVRECLKLDQDHKRCFAHYKQV 254
Query: 727 --------AGNEAFKSGRYTEAVEHYTVALSTN-----IESRPFAAICFCNRAAALQALG 773
+ E + GRYT+A Y + T R IC C
Sbjct: 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC-----FSKDE 309
Query: 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQ 833
+ +AI CS + ++ + A+ RA + + Y +A D + EN Q
Sbjct: 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND------Q 363
Query: 834 SRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALK 893
G + R L+Q+ + D+Y ILGVK + +I KAYRK AL+
Sbjct: 364 QIREGLEKAQRLLKQSQKR--------------DYYKILGVKRNAKKQEIIKAYRKLALQ 409
Query: 894 HHPD 897
HPD
Sbjct: 410 WHPD 413
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 33/228 (14%)
Query: 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660
A+E N+A + L +A A Y +YE AI TL A + + AD +
Sbjct: 24 AIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIS----TLNDAVEQGREMRADYKVI 78
Query: 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEIL------ESSMSL 714
+ S AR I +Y +G L+ ++ QK S+++ ++IL E +
Sbjct: 79 SKSFAR------IGNAYHKLGDLKKTIEYYQK-----SLTEHRTADILTKLRNAEKELKK 127
Query: 715 AGTVRALLHHKSA------GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAA 768
A A ++ + A G E F + AV+ YT I+ P A + NRAAA
Sbjct: 128 A-EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT----EMIKRAPEDARGYSNRAAA 182
Query: 769 LQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816
L L +AIADC+ A+ D N+ +A R+A +++Y A L
Sbjct: 183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 401 HQASSSLCKTVNGEEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYK 460
H+ + L K N E+E K K EA + V+P E E RL G + +
Sbjct: 109 HRTADILTKLRNAEKELK-------KAEA-----EAYVNP-----EKAEEARLEGKEYFT 151
Query: 461 NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520
++ A YT+ I P + G YSNRAA L EA+ DC A
Sbjct: 152 KSDWPNAVKAYTEMIKRAP-EDARG---------YSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 521 VDPNFLKVYMRAAKCHLVLGEIENA 545
DPNF++ Y+R A + + E +A
Sbjct: 202 KDPNFVRAYIRKATAQIAVKEYASA 226
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
KS GN A Y++A++ YT ALS P I NRAAA A GQ A D L
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSR 844
A +D Y+KA SR + DY A ++ + N ++ K+ G + R
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR----GLETTKR 126
Query: 845 DLRQACR 851
+ +A R
Sbjct: 127 KIEEANR 133
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 436 RTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCY 495
R+++PT + + GN A ++A D YTQ ++ P + P+ L
Sbjct: 3 RSMAPTP----ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN--------PIYL-- 48
Query: 496 SNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHK 551
SNRAA + G+ +A ED +A VDP + K + R + + + A+ Y K
Sbjct: 49 SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK 104
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 91/422 (21%), Positives = 159/422 (37%), Gaps = 86/422 (20%)
Query: 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVL--GEIENAQHYYH 550
+ Y RA ++ G+ + AL D + +F R + HL+L G+++ A+ +
Sbjct: 61 IAYYRRATVFLAXGKSKAALPDLTKVIQLKXDF--TAARLQRGHLLLKQGKLDEAEDDFK 118
Query: 551 KLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610
K+L S + ++ + + + ++ +N G S ++A+ +++ L
Sbjct: 119 KVLKSNPSENEEKEAQSQLIKSDEXQRLRSQALNAFG-------SGDYTAAIAFLDKILE 171
Query: 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA-DNGSVTYSLARLWR 669
+ +L E++A+ I+ E +++ AS L DN Y ++ L
Sbjct: 172 VCVWDAELRELRAECF---------IKEGEPRKAISDLKAASKLKNDNTEAFYKISTL-- 220
Query: 670 WRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS--- 726
Y+ +G E++L SE+ E R H+K
Sbjct: 221 -------YYQLGDHELSL-----------------SEVRECLKLDQDHKRCFAHYKQVKK 256
Query: 727 ------AGNEAFKSGRYTEAVEHYTVALSTN-----IESRPFAAICFCNRAAALQALGQI 775
+ E + GRYT+A Y T R IC C +
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHC-----FSKDEKP 311
Query: 776 ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSR 835
+AI CS + + + A+ RA + + Y +A D + EN Q
Sbjct: 312 VEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNEND------QQI 365
Query: 836 SPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHH 895
G + R L+Q+ + D+Y ILGVK + +I KAYRK AL+ H
Sbjct: 366 REGLEKAQRLLKQSQKR--------------DYYKILGVKRNAKKQEIIKAYRKLALQWH 411
Query: 896 PD 897
PD
Sbjct: 412 PD 413
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K+ GN +K G Y +A+E+Y AL E P A + N A G AI
Sbjct: 13 KNLGNAYYKQGDYQKAIEYYQKAL----ELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQS 834
A+ LD N KA RR + DY +A D Q+ + + N + KAKQ+
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA--KAKQN 116
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG 506
+ E W+ GN YK + +A ++Y + + P + +A + N G
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASA----------WYNLGNAYYKQG 57
Query: 507 RMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
++A+E A +DPN K + R + G+ + A Y K L
Sbjct: 58 DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQE 907
++Y +LGV+AS + DIKKAYRK AL+ HPDK + +E E
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAE 50
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESR------------PFAAICFCNRAAALQAL 772
K+ GN FKS + A++ YT L SR P A C N A +
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 773 GQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAK 832
A+ C A+ +D + TKA+ RRA + +++Y QA +DL++ I A +A+
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 833 QSRSPGRTISSRDLRQA 849
+ + + +D +A
Sbjct: 347 LLKVKQKIKAQKDKEKA 363
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETA-----GCCIKPLVL-CYSNRAATRISLGRM 508
GN +K+ N A YT+ + V S A G ++P+ L C N A ++ +
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENA 545
+ A++ C+ A +DP+ K R A+ L E + A
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 326
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G E F + AV+ YT I+ P A + NRAAAL L +AIADC+ A+
Sbjct: 11 GKEYFTKSDWPNAVKAYT----EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDL 816
D N+ +A R+A +++Y A L
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETL 95
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREA 511
RL G + + ++ A YT+ I P + G YSNRAA L EA
Sbjct: 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARG---------YSNRAAALAKLMSFPEA 57
Query: 512 LEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENA 545
+ DC A DPNF++ Y+R A + + E +A
Sbjct: 58 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 91
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K GN F +Y EA Y A++ N P A+ + NRA + Q A+ADC
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826
A+ LD KA + Y +A ++LQR S+ + Q
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALE 513
+GN+ + EA Y + I PL + + Y+NRA + + + +AL
Sbjct: 10 QGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQPEQALA 59
Query: 514 DCMMAATVDPNFLKVYMRAAKCHL 537
DC A +D +K + +C L
Sbjct: 60 DCRRALELDGQSVKAHFFLGQCQL 83
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K GN F +Y EA Y A++ N P A+ + NRA + Q A+ADC
Sbjct: 13 KEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826
A+ LD KA + Y +A ++LQR S+ + Q
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALE 513
+GN+ + EA Y + I PL + + Y+NRA + + + +AL
Sbjct: 15 QGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQPEQALA 64
Query: 514 DCMMAATVDPNFLKVYMRAAKCHL 537
DC A +D +K + +C L
Sbjct: 65 DCRRALELDGQSVKAHFFLGQCQL 88
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALS--------TNIESRPFAAICFC---NRAAALQALG 773
K G FK G+Y +A+ Y +S +N E++ A+ N A L
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAK 832
+ AI C+ A+ LD N K +SRR H + D+ A +D Q+++ + N A K +
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K+ N+ FK+ Y A++ Y+ A+ N P AI + NR+ A A+ D +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAK 832
A+ LD+ Y K RRAA + + + A D + +V + + K K
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 113
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 489 KPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVL 539
K + Y RAA+ ++LG+ R AL D V P+ M+ +C+ ++
Sbjct: 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E + + N +K + A FY+Q I P + + Y NR+ +
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN----------AIYYGNRSLAYLRTECY 56
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
AL D A +D ++K Y R A ++ LG+ A Y ++
Sbjct: 57 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV 101
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 716 GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQI 775
G ++ K+ N+ FK+ Y A++ Y+ A+ N P AI + NR+ A
Sbjct: 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECY 63
Query: 776 ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
A+ D + A+ LD+ Y K RRAA + + + A D + +V +
Sbjct: 64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 436 RTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCY 495
R P + E + + N +K + A FY+Q I P + + Y
Sbjct: 1 RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----------AIYY 50
Query: 496 SNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
NR+ + AL D A +D ++K Y R A ++ LG+ A Y ++
Sbjct: 51 GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV 108
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALS--------TNIESRPFAAICFC---NRAAALQALG 773
K G FK G+Y +A+ Y +S +N E++ A+ N A L
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAK 832
+ AI C+ A+ LD N K + RR H + D+ A +D Q+++ + N A K +
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR 909
D+Y ILGV+ +D IK AYR+ A K+HPD E D E + +
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFK 71
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIAD 781
L K GN+ F++ +Y +A+++Y AL ++ P + + N +A ++G + +
Sbjct: 7 LALKDKGNQFFRNKKYDDAIKYYNWALE--LKEDP---VFYSNLSACYVSVGDLKKVVEM 61
Query: 782 CSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819
+ A+ L +Y+K + RRA+ +E + + A DL L
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALE 513
+GNQ ++N +A +Y + +K + YSN +A +S+G +++ +E
Sbjct: 12 KGNQFFRNKKYDDAIKYYNWALE-----------LKEDPVFYSNLSACYVSVGDLKKVVE 60
Query: 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENA 545
A + P++ KV +R A + LG+ +A
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADA 92
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPF-AAICFCNRAAALQALGQIADAIADCSLAM 786
GNE FK G Y A+ YT AL +++ P A+ NRAA L A + S A+
Sbjct: 35 GNELFKCGDYGGALAAYTQAL--GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92
Query: 787 ALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
D KA+ RR+ E + QA DLQR VS+
Sbjct: 93 EKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K+ GN F + + EA+++Y A IE P + + N +A + G + I +
Sbjct: 25 KNRGNHFFTAKNFNEAIKYYQYA----IELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819
A+ + +++KA+ RRA+ +E + ++T A DL L
Sbjct: 81 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K+ GN F + + EA+++Y A IE P + + N +A + G + I +
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYA----IELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819
A+ + +++KA+ RRA+ +E + ++T A DL L
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR 909
+D+Y +L V ++ IKKAYRK ALK HPDK E +E E R
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERR 52
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 716 GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQI 775
G ++ K+ N+ FK+ Y A++ Y+ A+ N P AI + NR+ A
Sbjct: 16 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECY 71
Query: 776 ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
A+ D + A+ LD+ Y K RRAA + + + A D + +V +
Sbjct: 72 GYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 118
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 437 TVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYS 496
T P + E + + N +K + A FY+Q I P + + Y
Sbjct: 10 TDPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----------AIYYG 59
Query: 497 NRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
NR+ + AL D A +D ++K Y R A ++ LG+ A Y ++
Sbjct: 60 NRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV 116
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR----KATKESPQNSHYG 922
D+Y ILGV + +I+KAY++ A+K+HPD R++ D+E E + K E +S
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPD-RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 923 RSSDAYGYA 931
+ D YG+A
Sbjct: 63 AAYDQYGHA 71
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATK 913
D+Y I+GVK +D IK AYR+ A K+HPD E D E ++ +
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAE 52
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR----KATKESPQNSHYG 922
D+Y ILGV + +I+KAY++ A+K+HPD R++ D+E E + K E +S
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPD-RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 923 RSSDAYGYA 931
+ D YG+A
Sbjct: 63 AAYDQYGHA 71
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
D+Y ILGV + D+KKAYR+ ALK HPDK
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDK 39
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 863 GEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE 901
GE L Y +LG+ + T+ DIKK+YRK ALK+HPDK +
Sbjct: 16 GESL--YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD 52
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDKR-SEYDQEQEIRKA 911
+Y +LGVK + T ++KKAYRK ALK+HPDK +E ++ ++I +A
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQA 52
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR-KATKESPQ---NSHYG 922
D+Y ILGV + +I+KAY++ A+K+HPD R++ D+E E + K KE+ + +S
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPD-RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 923 RSSDAYGYAC 932
+ D YG+A
Sbjct: 63 AAYDQYGHAA 72
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDK 898
+Y +LGVK + ++KKAYRK ALK HPDK
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDK 40
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR 909
+Y ILGV S + IKKA+ K A+K+HPDK D E + R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFR 50
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDK 898
Y +LGV S ++KK YRKAALK+HPDK
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDK 40
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDK 898
+Y IL V S +A DIKKAYR+ AL+ HPDK
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDK 34
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 866 LDF--YLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATK 913
LDF Y +LGV + + ADIKKAY+K A + HPDK + E + +K
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISK 64
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRK 910
D+Y LG+ + +IK+AYR+ AL++HPDK E E++ ++
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKE 47
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 15/146 (10%)
Query: 668 WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727
W + F + DLL ++E +G + G S M++ + A K
Sbjct: 128 WELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGK--ARSDMTVEERIGAADRRKMD 185
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI-------------CFCNRAAALQALGQ 774
GN FK + EA++ Y +A++ + F C N AA L L +
Sbjct: 186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245
Query: 775 IADAIADCSLAMALDENYTKAVSRRA 800
+AI C++ + +E KA+ RR
Sbjct: 246 YDEAIGHCNIVLTEEEKNPKALFRRG 271
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 452 RLRGNQAYKNNNLTEAEDFYTQGINSV----------PLSETAGCCIKPLVLCYSNRAAT 501
++ GN +K L EA Y I + + A P C+ N AA
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP---CHLNIAAC 239
Query: 502 RISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA---A 558
I L R EA+ C + T + K R K LG++++A+ + K A A
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299
Query: 559 VCLDRRITIEAADGLQKAQK 578
+ + R E L + QK
Sbjct: 300 IRRELRALAEQEKALYQKQK 319
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALS-----------TNIESRPFAAICFCNRAAALQALG 773
K G FK G+Y +AV Y +S + S F F N A L
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
+ A+ C A+ LD K + RR ++ ++ A D ++++ +
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALS-----------TNIESRPFAAICFCNRAAALQALG 773
K G FK G+Y +AV Y +S + S F F N A L
Sbjct: 272 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
+ A+ C A+ LD K + RR ++ ++ A D ++++ +
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRS 900
D+Y ILG S +D+K+ Y+K L +HPDK+S
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQS 44
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL E P A + N A G +AI A+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL----ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQS 834
LD N +A + DY +A Q+ + + N + +AKQ+
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAKQN 116
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG 506
+ E W GN YK + EA ++Y + + P + A + N G
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA----------WYNLGNAYYKQG 57
Query: 507 RMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
EA+E A +DPN + + + G+ + A YY K L
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 855 SMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRS 900
++E+ KK D+Y ILG S +D+K+ Y+K L +HPDK+S
Sbjct: 9 ALEQTLKK----DWYSILGADPSANMSDLKQKYQKLILLYHPDKQS 50
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
+FY +LGV + ++ +I++A++K ALK HPDK
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDK 53
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
+FY +LGV + ++ +I++A++K ALK HPDK
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDK 34
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K GN+A G +A++ Y+ A+ + P + + NR+AA G A D
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQA 812
+ L ++ K SR+AA E + + +A
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEA 91
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALE 513
+GN+A N+ +A Y++ I P + + YSNR+A G ++A E
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHNH----------VLYSNRSAAYAKKGDYQKAYE 59
Query: 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557
D + P++ K Y R A L E A+ Y + L A
Sbjct: 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 103
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADC 782
K GN FK G Y EAV Y I ++P + + N+A AL LG+ AI C
Sbjct: 7 QKEQGNSLFKQGLYREAVHCY----DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPD 897
D+Y ILGV + + +IKKAY + A K+HPD
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPD 38
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL E P A + N A G +AI A+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL----ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQS 834
L N +A + DY +A Q+ + + N + +AKQ+
Sbjct: 72 LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA--EAKQN 116
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG 506
+ E W GN YK + EA ++Y + + P + A + N G
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA----------WYNLGNAYYKQG 57
Query: 507 RMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
EA+E A + PN + + + G+ + A YY K L
Sbjct: 58 DYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL + P +A + N A G +AI A+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829
LD +A + DY +A Q+ + L+ +SAE
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPRSAE 104
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 424 QNKFEAAEEVKQRTV--SPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481
Q ++ A E Q+ + P +A E W GN YK + EA ++Y + + P S
Sbjct: 14 QGDYDEAIEYYQKALELDPRSA-----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 482 ETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE 541
A + N G EA+E A +DP + + + G+
Sbjct: 69 AEA----------WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118
Query: 542 IENAQHYYHKLL 553
+ A YY K L
Sbjct: 119 YDEAIEYYQKAL 130
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR 507
E W GN YK + EA ++Y + + P S A + N G
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA----------WYNLGNAYYKQGD 50
Query: 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
EA+E A +DP + + + G+ + A YY K L
Sbjct: 51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL E P A + N A G +AI A+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL----ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 788 LDEN 791
LD N
Sbjct: 72 LDPN 75
>pdb|2XCB|A Chain A, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCB|B Chain B, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCC|A Chain A, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
pdb|2XCC|B Chain B, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
Length = 142
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 495 YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQ 546
+ A R SLG +AL+ A +D N + AA+CHL LG+++ A+
Sbjct: 55 FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAE 106
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 720 ALLHHKSA--------------GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNR 765
AL+H+K A GN + A++ YT A+ N P A N
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNL 117
Query: 766 AAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825
A+ + G I +AIA A+ L ++ A A +++ D+T +++LVSI+ +
Sbjct: 118 ASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177
Query: 826 QSAEKAKQSRSPGRTI 841
Q + S P ++
Sbjct: 178 QLEKNRLPSVHPHHSM 193
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL E P +A + N A G +AI A+
Sbjct: 10 GNAYYKQGDYDEAIEYYQKAL----ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 788 LD 789
LD
Sbjct: 66 LD 67
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDKRS 900
Y +LGV ++ T A IK AY + +HPD+ S
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNS 51
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
D + +LGVK + ++ KAYRK A+ HPDK
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN GR EA Y A IE++P A+ + N A G+I AI A+
Sbjct: 142 GNLLKALGRLEEAKACYLKA----IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828
LD N+ A + + R + +A + R +S+ N +
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 879 TAADIKKAYRKAALKHHPDKRSEYDQEQ 906
T +KK YRKA L HPDK + EQ
Sbjct: 62 TPEQVKKVYRKAVLVVHPDKATGQPYEQ 89
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 879 TAADIKKAYRKAALKHHPDKRSEYDQEQ 906
T +KK YRKA L HPDK + EQ
Sbjct: 49 TPEQVKKVYRKAVLVVHPDKATGQPYEQ 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,665,708
Number of Sequences: 62578
Number of extensions: 894077
Number of successful extensions: 1917
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1757
Number of HSP's gapped (non-prelim): 138
length of query: 954
length of database: 14,973,337
effective HSP length: 108
effective length of query: 846
effective length of database: 8,214,913
effective search space: 6949816398
effective search space used: 6949816398
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)