Query 002199
Match_columns 954
No_of_seqs 883 out of 5549
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 18:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0624 dsRNA-activated protei 100.0 2.1E-46 4.6E-51 391.5 39.3 440 442-944 32-483 (504)
2 KOG0550 Molecular chaperone (D 100.0 6.3E-39 1.4E-43 344.0 25.6 394 440-931 41-442 (486)
3 KOG4626 O-linked N-acetylgluco 100.0 2.6E-35 5.7E-40 326.8 28.5 313 442-827 110-422 (966)
4 KOG4626 O-linked N-acetylgluco 100.0 2.9E-34 6.4E-39 318.5 25.7 335 441-851 143-501 (966)
5 TIGR00990 3a0801s09 mitochondr 100.0 1.8E-29 3.9E-34 307.5 48.0 332 440-826 119-500 (615)
6 KOG0547 Translocase of outer m 100.0 5.2E-28 1.1E-32 264.3 36.9 351 443-826 110-570 (606)
7 KOG0548 Molecular co-chaperone 100.0 9.5E-28 2.1E-32 266.9 35.1 354 448-829 2-462 (539)
8 TIGR00990 3a0801s09 mitochondr 100.0 8.1E-27 1.7E-31 284.3 43.6 328 448-825 160-574 (615)
9 PRK15174 Vi polysaccharide exp 100.0 3.2E-26 7E-31 279.2 43.0 313 441-827 69-386 (656)
10 PRK11447 cellulose synthase su 100.0 3.1E-25 6.8E-30 287.5 42.9 372 424-825 283-703 (1157)
11 PRK15174 Vi polysaccharide exp 99.9 5.5E-25 1.2E-29 268.5 41.6 306 448-826 42-351 (656)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 4.2E-24 9E-29 269.2 47.2 327 447-827 464-804 (899)
13 PRK11447 cellulose synthase su 99.9 5E-24 1.1E-28 276.3 44.7 318 453-827 274-671 (1157)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 4.2E-24 9.1E-29 269.1 41.9 346 445-858 530-889 (899)
15 PRK10049 pgaA outer membrane p 99.9 2.9E-22 6.3E-27 249.3 39.8 354 445-829 46-463 (765)
16 KOG1126 DNA-binding cell divis 99.9 5.7E-23 1.2E-27 234.0 26.6 315 492-888 317-634 (638)
17 PRK11788 tetratricopeptide rep 99.9 1.9E-21 4.2E-26 223.6 36.9 303 447-822 34-347 (389)
18 PRK10049 pgaA outer membrane p 99.9 2.2E-20 4.7E-25 232.6 43.9 322 454-828 21-394 (765)
19 KOG1126 DNA-binding cell divis 99.9 4.7E-22 1E-26 226.5 26.1 310 446-828 315-626 (638)
20 KOG2002 TPR-containing nuclear 99.9 1.2E-20 2.6E-25 221.5 36.5 359 441-828 157-565 (1018)
21 PRK09782 bacteriophage N4 rece 99.9 1.7E-20 3.7E-25 234.4 37.3 310 445-828 373-712 (987)
22 PRK11788 tetratricopeptide rep 99.9 4.6E-20 9.9E-25 212.2 36.6 281 493-827 36-316 (389)
23 PRK09782 bacteriophage N4 rece 99.9 1.6E-20 3.5E-25 234.7 34.3 290 461-827 451-745 (987)
24 KOG1155 Anaphase-promoting com 99.9 9.2E-20 2E-24 199.2 34.0 369 447-894 163-554 (559)
25 KOG0547 Translocase of outer m 99.9 2E-20 4.2E-25 205.4 28.3 293 492-825 115-494 (606)
26 KOG2002 TPR-containing nuclear 99.9 1.6E-19 3.4E-24 212.2 36.5 321 464-859 146-471 (1018)
27 KOG2076 RNA polymerase III tra 99.9 2.8E-19 6.2E-24 209.1 37.4 327 446-822 137-512 (895)
28 KOG2003 TPR repeat-containing 99.9 5.1E-19 1.1E-23 191.4 30.2 337 448-831 237-664 (840)
29 KOG1155 Anaphase-promoting com 99.8 3.6E-18 7.8E-23 186.9 31.7 299 454-825 233-539 (559)
30 KOG1173 Anaphase-promoting com 99.8 4.3E-18 9.2E-23 190.6 29.2 280 444-826 240-522 (611)
31 PRK14574 hmsH outer membrane p 99.8 2.6E-16 5.7E-21 193.5 42.4 355 440-827 26-450 (822)
32 PRK14574 hmsH outer membrane p 99.8 1.1E-16 2.3E-21 197.0 38.7 340 448-828 102-485 (822)
33 KOG0624 dsRNA-activated protei 99.8 9.7E-17 2.1E-21 169.5 32.0 303 440-799 64-381 (504)
34 PF13429 TPR_15: Tetratricopep 99.8 4.7E-19 1E-23 195.0 13.1 261 453-822 13-277 (280)
35 PRK12370 invasion protein regu 99.8 4.2E-17 9.1E-22 196.1 31.1 264 449-822 259-535 (553)
36 TIGR00540 hemY_coli hemY prote 99.8 5.3E-16 1.2E-20 180.0 37.2 310 446-823 82-400 (409)
37 PRK11189 lipoprotein NlpI; Pro 99.8 8.1E-17 1.7E-21 178.6 28.5 244 462-808 40-286 (296)
38 PRK12370 invasion protein regu 99.8 1.2E-16 2.7E-21 192.1 30.6 243 493-824 259-504 (553)
39 KOG1125 TPR repeat-containing 99.8 6E-17 1.3E-21 182.5 22.3 239 452-752 289-529 (579)
40 PRK10747 putative protoheme IX 99.8 2.9E-15 6.2E-20 173.1 36.8 301 445-823 81-391 (398)
41 KOG1173 Anaphase-promoting com 99.7 5.5E-16 1.2E-20 173.9 29.1 355 447-885 140-530 (611)
42 KOG1174 Anaphase-promoting com 99.7 1.2E-15 2.5E-20 164.9 30.5 304 450-827 200-505 (564)
43 KOG1129 TPR repeat-containing 99.7 7.3E-17 1.6E-21 169.5 20.2 267 501-828 188-464 (478)
44 KOG2076 RNA polymerase III tra 99.7 4.4E-15 9.5E-20 174.4 37.2 317 492-859 139-502 (895)
45 KOG0548 Molecular co-chaperone 99.7 2.4E-15 5.2E-20 168.5 33.0 362 494-898 4-477 (539)
46 KOG2003 TPR repeat-containing 99.7 2.5E-15 5.4E-20 163.1 28.9 287 450-808 421-709 (840)
47 PRK11189 lipoprotein NlpI; Pro 99.7 2.2E-15 4.7E-20 167.1 28.5 209 443-700 59-269 (296)
48 TIGR02521 type_IV_pilW type IV 99.7 1.7E-15 3.6E-20 159.0 26.1 205 445-696 28-232 (234)
49 KOG1129 TPR repeat-containing 99.7 6.4E-16 1.4E-20 162.5 20.5 297 443-803 176-473 (478)
50 TIGR02521 type_IV_pilW type IV 99.7 4.4E-15 9.6E-20 155.8 26.6 203 579-823 31-233 (234)
51 KOG1125 TPR repeat-containing 99.7 3.8E-16 8.3E-21 176.1 19.2 242 496-825 289-530 (579)
52 KOG1840 Kinesin light chain [C 99.7 5.7E-15 1.2E-19 171.0 28.7 215 585-823 247-480 (508)
53 KOG0495 HAT repeat protein [RN 99.7 1.3E-13 2.9E-18 156.1 37.3 330 445-824 513-882 (913)
54 KOG4162 Predicted calmodulin-b 99.7 2.4E-14 5.1E-19 165.8 31.9 317 460-826 406-787 (799)
55 KOG1840 Kinesin light chain [C 99.7 5.4E-15 1.2E-19 171.2 26.4 278 440-788 191-479 (508)
56 TIGR00540 hemY_coli hemY prote 99.7 2E-14 4.4E-19 166.7 31.4 281 493-825 85-369 (409)
57 KOG4162 Predicted calmodulin-b 99.7 2.1E-13 4.6E-18 158.0 37.1 358 445-859 320-773 (799)
58 KOG1130 Predicted G-alpha GTPa 99.7 7.2E-15 1.6E-19 158.5 22.5 320 447-810 16-372 (639)
59 KOG1174 Anaphase-promoting com 99.7 1.6E-14 3.6E-19 156.2 25.2 284 442-799 226-511 (564)
60 KOG1156 N-terminal acetyltrans 99.6 4.7E-13 1E-17 152.6 35.6 337 444-826 37-438 (700)
61 COG3063 PilF Tfp pilus assembl 99.6 3.6E-14 7.8E-19 144.4 23.5 213 443-702 30-242 (250)
62 PRK10747 putative protoheme IX 99.6 3.6E-13 7.9E-18 155.7 34.4 278 493-828 85-363 (398)
63 cd05804 StaR_like StaR_like; a 99.6 7.1E-13 1.5E-17 150.6 34.6 319 444-823 2-337 (355)
64 PF13429 TPR_15: Tetratricopep 99.6 2.3E-15 4.9E-20 165.7 13.4 253 497-859 13-267 (280)
65 PLN02789 farnesyltranstransfer 99.6 2.5E-13 5.5E-18 151.0 28.2 209 445-702 34-256 (320)
66 PLN02789 farnesyltranstransfer 99.6 1.1E-13 2.4E-18 153.9 24.9 228 491-806 36-268 (320)
67 COG2956 Predicted N-acetylgluc 99.6 1.4E-12 3E-17 138.1 30.9 275 496-824 39-313 (389)
68 KOG0553 TPR repeat-containing 99.6 9.4E-15 2E-19 154.3 13.7 108 443-560 76-183 (304)
69 COG3063 PilF Tfp pilus assembl 99.6 2.7E-13 5.9E-18 138.1 23.5 208 579-828 35-242 (250)
70 KOG0550 Molecular chaperone (D 99.6 1.9E-13 4E-18 148.6 23.4 278 441-791 76-353 (486)
71 KOG0495 HAT repeat protein [RN 99.6 1.5E-11 3.3E-16 139.7 37.5 271 493-827 517-787 (913)
72 KOG0553 TPR repeat-containing 99.6 4.5E-14 9.7E-19 149.2 16.0 124 717-857 77-200 (304)
73 PLN03218 maturation of RBCL 1; 99.6 1.8E-11 4E-16 154.9 42.4 300 449-820 438-746 (1060)
74 PLN03218 maturation of RBCL 1; 99.6 1.5E-11 3.2E-16 155.8 41.3 302 447-822 471-783 (1060)
75 KOG1156 N-terminal acetyltrans 99.6 8.3E-12 1.8E-16 142.6 34.7 351 422-821 53-467 (700)
76 PF12569 NARP1: NMDA receptor- 99.6 6.4E-12 1.4E-16 147.5 34.6 322 447-826 3-338 (517)
77 KOG1130 Predicted G-alpha GTPa 99.5 4.6E-13 1E-17 144.7 21.2 361 497-900 22-420 (639)
78 KOG1127 TPR repeat-containing 99.5 8E-13 1.7E-17 155.8 25.0 319 460-830 470-887 (1238)
79 PLN03081 pentatricopeptide (PP 99.5 5.3E-12 1.1E-16 156.7 30.4 191 584-822 365-557 (697)
80 PLN03081 pentatricopeptide (PP 99.5 2.2E-11 4.7E-16 151.2 35.3 329 421-825 169-526 (697)
81 TIGR03302 OM_YfiO outer membra 99.5 2E-12 4.4E-17 138.3 22.8 191 445-647 30-234 (235)
82 COG2956 Predicted N-acetylgluc 99.5 8.9E-11 1.9E-15 124.6 32.2 270 451-794 38-317 (389)
83 PLN03077 Protein ECB2; Provisi 99.5 5.2E-11 1.1E-15 151.3 36.8 323 448-822 354-720 (857)
84 KOG0543 FKBP-type peptidyl-pro 99.5 3.7E-13 8.1E-18 147.7 14.9 158 373-560 158-325 (397)
85 cd05804 StaR_like StaR_like; a 99.5 3.7E-11 7.9E-16 136.6 31.6 274 493-823 7-294 (355)
86 KOG2376 Signal recognition par 99.5 1.3E-10 2.7E-15 131.8 34.5 331 443-820 41-403 (652)
87 KOG1127 TPR repeat-containing 99.5 3.5E-12 7.7E-17 150.5 22.9 325 447-818 561-909 (1238)
88 TIGR03302 OM_YfiO outer membra 99.5 5.9E-12 1.3E-16 134.7 21.4 183 611-824 28-234 (235)
89 KOG3785 Uncharacterized conser 99.4 4.5E-11 9.7E-16 127.5 26.7 333 457-816 31-451 (557)
90 COG0484 DnaJ DnaJ-class molecu 99.4 2E-13 4.3E-18 150.4 6.6 67 865-932 3-73 (371)
91 PRK15359 type III secretion sy 99.4 5.7E-12 1.2E-16 124.5 16.3 113 725-854 28-140 (144)
92 KOG2376 Signal recognition par 99.4 6E-10 1.3E-14 126.4 33.5 338 452-830 83-495 (652)
93 KOG0713 Molecular chaperone (D 99.4 1.9E-13 4.1E-18 146.3 4.7 67 864-931 14-84 (336)
94 PLN03077 Protein ECB2; Provisi 99.4 4.3E-10 9.3E-15 143.0 36.0 317 447-826 322-690 (857)
95 PRK14720 transcript cleavage f 99.4 3.3E-11 7.3E-16 147.1 23.9 244 493-827 32-311 (906)
96 PRK15359 type III secretion sy 99.4 1E-11 2.2E-16 122.8 15.6 128 636-807 13-140 (144)
97 PRK04841 transcriptional regul 99.4 1.5E-09 3.3E-14 138.9 39.2 334 450-825 411-763 (903)
98 KOG1915 Cell cycle control pro 99.3 8.6E-09 1.9E-13 114.0 37.4 335 447-822 72-500 (677)
99 KOG4234 TPR repeat-containing 99.3 4.4E-11 9.5E-16 118.9 16.3 110 445-559 92-201 (271)
100 KOG4648 Uncharacterized conser 99.3 9.7E-13 2.1E-17 139.4 5.0 223 449-702 98-336 (536)
101 PRK14720 transcript cleavage f 99.3 1.5E-10 3.2E-15 141.5 24.4 267 441-792 24-310 (906)
102 PRK10370 formate-dependent nit 99.3 1.4E-10 3.1E-15 120.7 20.2 123 680-826 52-177 (198)
103 PF12569 NARP1: NMDA receptor- 99.3 3.5E-08 7.7E-13 116.2 38.9 266 443-750 33-334 (517)
104 PRK15363 pathogenicity island 99.3 1.6E-10 3.4E-15 113.3 15.7 102 445-556 32-133 (157)
105 PRK15179 Vi polysaccharide bio 99.2 5.2E-10 1.1E-14 136.0 23.5 159 600-799 70-228 (694)
106 KOG4340 Uncharacterized conser 99.2 5.3E-09 1.2E-13 109.7 27.2 219 458-691 20-265 (459)
107 COG3071 HemY Uncharacterized e 99.2 3.1E-08 6.8E-13 108.6 34.2 304 445-822 81-390 (400)
108 PRK15179 Vi polysaccharide bio 99.2 2.8E-10 6E-15 138.4 20.4 131 669-823 88-218 (694)
109 PRK10370 formate-dependent nit 99.2 4.3E-10 9.4E-15 117.2 18.0 156 452-650 20-178 (198)
110 COG3071 HemY Uncharacterized e 99.2 3.1E-08 6.6E-13 108.7 32.5 293 493-858 85-379 (400)
111 TIGR02552 LcrH_SycD type III s 99.2 3.4E-10 7.4E-15 110.0 15.2 117 688-828 4-120 (135)
112 PRK04841 transcriptional regul 99.2 3.9E-08 8.4E-13 126.1 37.9 327 447-824 373-722 (903)
113 PLN03088 SGT1, suppressor of 99.2 2.5E-10 5.5E-15 129.8 15.9 101 450-560 4-104 (356)
114 TIGR02552 LcrH_SycD type III s 99.2 5.3E-10 1.1E-14 108.7 15.3 107 443-559 12-118 (135)
115 KOG4234 TPR repeat-containing 99.2 3.9E-10 8.5E-15 112.2 13.9 112 718-829 92-204 (271)
116 KOG1128 Uncharacterized conser 99.2 1.1E-09 2.4E-14 127.0 19.7 224 523-824 395-618 (777)
117 KOG0543 FKBP-type peptidyl-pro 99.2 4.1E-10 8.9E-15 124.1 15.0 126 721-859 208-344 (397)
118 PRK15363 pathogenicity island 99.2 9.1E-10 2E-14 108.0 15.5 101 719-823 33-133 (157)
119 KOG3785 Uncharacterized conser 99.1 8.1E-08 1.7E-12 103.0 30.3 340 452-830 61-498 (557)
120 KOG1915 Cell cycle control pro 99.1 3.6E-07 7.9E-12 101.5 35.7 329 448-827 107-541 (677)
121 KOG1128 Uncharacterized conser 99.1 6.6E-09 1.4E-13 120.7 23.1 224 444-751 394-617 (777)
122 KOG0712 Molecular chaperone (D 99.1 5.3E-11 1.2E-15 129.6 4.9 66 865-931 3-69 (337)
123 PLN03088 SGT1, suppressor of 99.1 9.6E-10 2.1E-14 125.1 15.3 102 724-829 5-106 (356)
124 KOG3060 Uncharacterized conser 99.1 5E-08 1.1E-12 101.1 25.9 174 586-803 59-235 (289)
125 COG5010 TadD Flp pilus assembl 99.1 7.7E-09 1.7E-13 108.1 19.9 177 601-819 52-228 (257)
126 KOG3060 Uncharacterized conser 99.1 1.8E-08 4E-13 104.3 22.4 177 443-651 47-226 (289)
127 PRK10866 outer membrane biogen 99.1 2.8E-08 6.1E-13 106.9 24.9 181 447-641 31-237 (243)
128 PRK14288 chaperone protein Dna 99.1 5.9E-11 1.3E-15 134.9 4.5 65 866-931 3-71 (369)
129 PF04733 Coatomer_E: Coatomer 99.1 7.3E-10 1.6E-14 122.0 13.0 253 500-825 9-268 (290)
130 KOG1941 Acetylcholine receptor 99.1 5.2E-08 1.1E-12 104.9 26.1 334 447-825 5-363 (518)
131 PTZ00037 DnaJ_C chaperone prot 99.1 9.3E-11 2E-15 134.6 5.1 66 865-931 27-92 (421)
132 PF13525 YfiO: Outer membrane 99.1 3.1E-08 6.8E-13 103.8 23.1 177 446-636 3-198 (203)
133 PRK14296 chaperone protein Dna 99.0 1.9E-10 4E-15 130.9 5.2 66 865-931 3-71 (372)
134 PRK14279 chaperone protein Dna 99.0 2E-10 4.2E-15 131.6 5.0 65 865-930 8-76 (392)
135 COG5010 TadD Flp pilus assembl 99.0 2.6E-08 5.7E-13 104.2 19.7 158 583-784 70-227 (257)
136 PF04733 Coatomer_E: Coatomer 98.9 1.2E-08 2.6E-13 112.4 15.5 261 456-795 9-272 (290)
137 PRK02603 photosystem I assembl 98.9 3.1E-08 6.6E-13 101.0 17.2 108 440-554 27-134 (172)
138 PF14938 SNAP: Soluble NSF att 98.9 1.2E-07 2.7E-12 104.5 23.1 142 669-824 116-268 (282)
139 COG4783 Putative Zn-dependent 98.9 2.5E-07 5.4E-12 104.2 25.0 150 493-698 307-456 (484)
140 KOG1941 Acetylcholine receptor 98.9 3.6E-07 7.9E-12 98.5 24.9 295 493-824 7-322 (518)
141 KOG4340 Uncharacterized conser 98.9 2.1E-07 4.5E-12 98.0 22.6 266 502-816 20-333 (459)
142 KOG0719 Molecular chaperone (D 98.9 4.4E-10 9.5E-15 113.8 2.7 82 864-946 12-101 (264)
143 PRK14286 chaperone protein Dna 98.9 6.7E-10 1.4E-14 126.5 4.5 65 866-931 4-72 (372)
144 cd00189 TPR Tetratricopeptide 98.9 1.2E-08 2.6E-13 89.7 11.4 98 450-557 2-99 (100)
145 TIGR02795 tol_pal_ybgF tol-pal 98.9 2E-08 4.3E-13 94.6 13.6 105 448-559 2-109 (119)
146 PRK14282 chaperone protein Dna 98.9 1E-09 2.2E-14 125.0 5.5 66 865-931 3-73 (369)
147 KOG4648 Uncharacterized conser 98.9 1.3E-09 2.8E-14 116.1 5.6 223 580-828 98-336 (536)
148 PRK14287 chaperone protein Dna 98.9 9.2E-10 2E-14 125.3 4.9 66 865-931 3-71 (371)
149 PF13414 TPR_11: TPR repeat; P 98.9 2.8E-09 6.2E-14 91.0 6.6 67 447-523 2-69 (69)
150 COG4785 NlpI Lipoprotein NlpI, 98.9 4.5E-07 9.7E-12 91.8 22.4 206 441-695 58-265 (297)
151 PRK14298 chaperone protein Dna 98.9 1.7E-09 3.6E-14 123.3 5.8 66 865-931 4-72 (377)
152 PRK14283 chaperone protein Dna 98.9 1.4E-09 3E-14 124.4 4.9 66 865-931 4-72 (378)
153 PF13414 TPR_11: TPR repeat; P 98.9 6.8E-09 1.5E-13 88.6 8.1 67 758-824 2-69 (69)
154 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.8E-08 8.3E-13 92.7 13.9 105 722-827 3-110 (119)
155 PRK14285 chaperone protein Dna 98.9 1.7E-09 3.6E-14 122.9 5.2 65 866-931 3-71 (365)
156 PRK14278 chaperone protein Dna 98.9 1.8E-09 3.9E-14 123.3 5.2 65 866-931 3-70 (378)
157 PRK14299 chaperone protein Dna 98.9 1.6E-09 3.4E-14 119.5 4.5 66 865-931 3-71 (291)
158 PRK14276 chaperone protein Dna 98.9 1.8E-09 3.9E-14 123.4 5.2 65 866-931 4-71 (380)
159 PRK14294 chaperone protein Dna 98.9 1.6E-09 3.4E-14 123.4 4.7 66 865-931 3-72 (366)
160 PF13525 YfiO: Outer membrane 98.9 4.5E-07 9.7E-12 95.1 22.8 145 616-778 42-197 (203)
161 PRK02603 photosystem I assembl 98.8 4.9E-08 1.1E-12 99.5 14.9 90 718-808 32-121 (172)
162 PRK14277 chaperone protein Dna 98.8 1.9E-09 4.2E-14 123.4 4.9 66 865-931 4-73 (386)
163 PRK10866 outer membrane biogen 98.8 6.8E-07 1.5E-11 96.2 23.9 184 579-783 32-236 (243)
164 COG4783 Putative Zn-dependent 98.8 8.3E-07 1.8E-11 100.0 25.2 103 580-702 307-409 (484)
165 cd00189 TPR Tetratricopeptide 98.8 3.5E-08 7.5E-13 86.7 11.7 97 724-824 3-99 (100)
166 PRK14297 chaperone protein Dna 98.8 2.6E-09 5.7E-14 122.1 5.5 65 866-931 4-72 (380)
167 PRK14280 chaperone protein Dna 98.8 2.4E-09 5.2E-14 122.2 4.7 65 866-931 4-71 (376)
168 CHL00033 ycf3 photosystem I as 98.8 1.3E-07 2.8E-12 95.9 17.0 102 443-551 30-138 (168)
169 PRK14284 chaperone protein Dna 98.8 2.4E-09 5.2E-14 122.8 4.6 65 866-931 1-69 (391)
170 PRK14291 chaperone protein Dna 98.8 2.8E-09 6E-14 122.0 5.0 65 866-931 3-70 (382)
171 PRK14301 chaperone protein Dna 98.8 3.1E-09 6.7E-14 121.1 5.4 66 865-931 3-72 (373)
172 PF12895 Apc3: Anaphase-promot 98.8 8.9E-09 1.9E-13 91.8 7.1 84 460-552 1-84 (84)
173 KOG2047 mRNA splicing factor [ 98.8 1.2E-05 2.5E-10 92.8 33.6 331 447-825 247-618 (835)
174 KOG0716 Molecular chaperone (D 98.8 2.2E-09 4.8E-14 111.7 3.5 66 865-931 30-99 (279)
175 PF14938 SNAP: Soluble NSF att 98.8 3.2E-07 6.9E-12 101.2 20.3 182 618-825 37-228 (282)
176 PRK14281 chaperone protein Dna 98.8 4.3E-09 9.2E-14 121.0 5.3 65 866-931 3-71 (397)
177 KOG0718 Molecular chaperone (D 98.8 4.4E-09 9.6E-14 116.1 5.2 75 865-942 8-89 (546)
178 KOG0551 Hsp90 co-chaperone CNS 98.8 1.2E-07 2.6E-12 101.5 15.6 109 443-557 76-184 (390)
179 PRK14295 chaperone protein Dna 98.8 4.2E-09 9.2E-14 120.5 4.9 66 865-931 8-81 (389)
180 COG0457 NrfG FOG: TPR repeat [ 98.8 1.1E-05 2.5E-10 81.8 29.7 202 583-825 63-268 (291)
181 COG0457 NrfG FOG: TPR repeat [ 98.8 3.5E-05 7.6E-10 78.2 33.0 237 505-806 36-279 (291)
182 PRK10767 chaperone protein Dna 98.8 5.6E-09 1.2E-13 119.3 5.1 66 865-931 3-72 (371)
183 PF12895 Apc3: Anaphase-promot 98.8 2.6E-08 5.5E-13 88.8 8.1 84 733-819 1-84 (84)
184 PRK14290 chaperone protein Dna 98.8 7.2E-09 1.6E-13 117.9 5.7 65 866-931 3-72 (365)
185 COG4785 NlpI Lipoprotein NlpI, 98.7 8.4E-07 1.8E-11 89.9 19.3 204 490-751 63-267 (297)
186 PRK15331 chaperone protein Sic 98.7 1.3E-07 2.9E-12 93.3 13.3 103 443-555 32-134 (165)
187 CHL00033 ycf3 photosystem I as 98.7 1.5E-07 3.2E-12 95.6 14.1 105 719-824 33-144 (168)
188 COG4235 Cytochrome c biogenesi 98.7 2.4E-07 5.3E-12 99.4 15.9 105 720-828 155-262 (287)
189 PRK14300 chaperone protein Dna 98.7 7.6E-09 1.6E-13 118.0 4.7 65 866-931 3-70 (372)
190 PTZ00341 Ring-infected erythro 98.7 8.7E-09 1.9E-13 123.6 5.3 68 864-932 571-641 (1136)
191 PF09976 TPR_21: Tetratricopep 98.7 5.6E-07 1.2E-11 89.0 17.4 134 446-643 9-145 (145)
192 PHA03102 Small T antigen; Revi 98.7 1.3E-08 2.8E-13 99.7 5.2 64 867-931 6-71 (153)
193 KOG0691 Molecular chaperone (D 98.7 8.4E-09 1.8E-13 111.6 4.2 66 865-931 4-73 (296)
194 TIGR02349 DnaJ_bact chaperone 98.7 1E-08 2.2E-13 116.6 5.0 64 867-931 1-67 (354)
195 PRK14292 chaperone protein Dna 98.7 1.3E-08 2.7E-13 116.4 5.5 65 866-931 2-69 (371)
196 KOG4642 Chaperone-dependent E3 98.7 3.9E-08 8.5E-13 100.9 8.2 102 445-556 7-108 (284)
197 KOG4555 TPR repeat-containing 98.7 8.9E-07 1.9E-11 82.8 16.3 106 443-558 38-147 (175)
198 PRK10266 curved DNA-binding pr 98.7 1.1E-08 2.4E-13 113.7 4.2 64 866-930 4-70 (306)
199 KOG0717 Molecular chaperone (D 98.7 1.4E-08 3E-13 112.5 4.8 64 865-929 7-75 (508)
200 COG4235 Cytochrome c biogenesi 98.7 2.6E-07 5.7E-12 99.1 14.2 125 508-651 138-262 (287)
201 KOG0545 Aryl-hydrocarbon recep 98.7 3.7E-07 8E-12 93.9 14.5 126 434-559 164-297 (329)
202 KOG2047 mRNA splicing factor [ 98.7 7.4E-05 1.6E-09 86.4 34.3 334 463-824 83-542 (835)
203 PF00226 DnaJ: DnaJ domain; I 98.7 1.2E-08 2.7E-13 86.0 3.1 59 867-926 1-64 (64)
204 KOG3617 WD40 and TPR repeat-co 98.7 4.3E-06 9.4E-11 97.9 24.4 309 455-820 807-1172(1416)
205 PRK14289 chaperone protein Dna 98.7 1.6E-08 3.5E-13 116.0 5.0 66 865-931 4-73 (386)
206 PF09976 TPR_21: Tetratricopep 98.6 1E-06 2.2E-11 87.2 16.7 125 677-820 21-145 (145)
207 PRK14293 chaperone protein Dna 98.6 2E-08 4.3E-13 114.7 4.7 65 866-931 3-70 (374)
208 PRK11906 transcriptional regul 98.6 1E-06 2.2E-11 99.9 18.1 163 450-644 257-435 (458)
209 KOG3081 Vesicle coat complex C 98.6 6.5E-06 1.4E-10 86.3 22.3 252 500-821 16-269 (299)
210 KOG1070 rRNA processing protei 98.6 9.2E-06 2E-10 100.3 26.7 260 505-822 1437-1700(1710)
211 PF13432 TPR_16: Tetratricopep 98.6 1.3E-07 2.8E-12 79.8 8.0 64 496-559 1-64 (65)
212 PF13432 TPR_16: Tetratricopep 98.6 1.2E-07 2.6E-12 80.0 7.4 63 764-826 2-64 (65)
213 PRK10153 DNA-binding transcrip 98.6 1.2E-06 2.6E-11 104.1 17.9 138 447-617 338-488 (517)
214 KOG0551 Hsp90 co-chaperone CNS 98.6 6.8E-07 1.5E-11 95.9 13.8 130 720-849 80-210 (390)
215 KOG0715 Molecular chaperone (D 98.6 3.7E-08 8.1E-13 107.7 4.5 64 867-931 44-110 (288)
216 PRK10153 DNA-binding transcrip 98.6 1E-06 2.2E-11 104.5 16.8 139 668-829 340-489 (517)
217 PRK10803 tol-pal system protei 98.6 1.1E-06 2.5E-11 95.3 15.2 105 448-559 142-250 (263)
218 PRK11906 transcriptional regul 98.5 2.7E-06 5.8E-11 96.6 18.3 172 581-818 257-432 (458)
219 KOG4642 Chaperone-dependent E3 98.5 3E-07 6.5E-12 94.5 9.2 98 723-824 12-109 (284)
220 PRK10803 tol-pal system protei 98.5 1.2E-06 2.7E-11 95.0 14.7 103 724-827 145-251 (263)
221 PRK15331 chaperone protein Sic 98.5 1.2E-06 2.6E-11 86.6 12.8 100 719-822 35-134 (165)
222 KOG2471 TPR repeat-containing 98.5 3E-05 6.5E-10 86.8 24.6 331 458-819 216-681 (696)
223 KOG2300 Uncharacterized conser 98.5 0.0022 4.8E-08 72.4 37.7 361 443-823 39-475 (629)
224 KOG2053 Mitochondrial inherita 98.5 0.00088 1.9E-08 80.6 36.6 91 458-558 19-109 (932)
225 COG3898 Uncharacterized membra 98.4 0.00048 1E-08 75.7 31.1 302 454-829 90-398 (531)
226 KOG0376 Serine-threonine phosp 98.4 2.9E-07 6.2E-12 103.7 6.8 105 448-562 4-108 (476)
227 TIGR03835 termin_org_DnaJ term 98.4 1.5E-07 3.2E-12 110.9 4.1 65 866-931 2-69 (871)
228 KOG2471 TPR repeat-containing 98.4 1.7E-05 3.6E-10 88.8 19.7 304 449-806 18-382 (696)
229 cd06257 DnaJ DnaJ domain or J- 98.4 4.5E-07 9.7E-12 73.8 5.4 50 867-916 1-54 (55)
230 COG4105 ComL DNA uptake lipopr 98.4 7.3E-05 1.6E-09 79.0 23.1 188 447-649 33-236 (254)
231 PF12688 TPR_5: Tetratrico pep 98.4 5.1E-06 1.1E-10 79.0 13.2 99 449-554 2-103 (120)
232 PF14559 TPR_19: Tetratricopep 98.4 9E-07 2E-11 75.1 7.3 68 458-535 1-68 (68)
233 KOG0721 Molecular chaperone (D 98.4 3.3E-07 7.1E-12 92.7 5.1 66 865-931 98-167 (230)
234 smart00271 DnaJ DnaJ molecular 98.4 6.2E-07 1.3E-11 74.4 5.5 51 867-917 2-57 (60)
235 PF13512 TPR_18: Tetratricopep 98.4 7.8E-06 1.7E-10 79.2 13.7 106 448-560 10-133 (142)
236 PF13371 TPR_9: Tetratricopept 98.3 2E-06 4.3E-11 74.1 8.6 70 455-534 2-71 (73)
237 KOG4555 TPR repeat-containing 98.3 1.6E-05 3.5E-10 74.6 14.7 95 726-824 48-146 (175)
238 KOG0545 Aryl-hydrocarbon recep 98.3 5.8E-06 1.3E-10 85.3 12.9 108 719-826 176-297 (329)
239 PHA02624 large T antigen; Prov 98.3 3.7E-07 8E-12 106.7 4.2 81 865-948 10-97 (647)
240 PF12688 TPR_5: Tetratrico pep 98.3 1.3E-05 2.8E-10 76.3 13.8 98 723-821 3-103 (120)
241 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.3E-05 2.8E-10 91.5 15.9 119 674-819 176-294 (395)
242 PF13424 TPR_12: Tetratricopep 98.3 1.9E-06 4.1E-11 75.4 7.1 68 756-823 2-76 (78)
243 PF13512 TPR_18: Tetratricopep 98.3 1.3E-05 2.9E-10 77.6 13.4 104 723-827 12-133 (142)
244 COG1729 Uncharacterized protei 98.3 8.1E-06 1.8E-10 86.8 13.0 102 451-559 144-248 (262)
245 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1E-05 2.3E-10 92.2 14.7 119 533-693 176-294 (395)
246 KOG2796 Uncharacterized conser 98.3 0.00048 1E-08 72.2 24.8 243 492-803 69-333 (366)
247 COG3898 Uncharacterized membra 98.2 0.001 2.2E-08 73.3 28.2 266 449-788 121-392 (531)
248 PTZ00100 DnaJ chaperone protei 98.2 1.4E-06 3.1E-11 81.0 5.6 52 865-916 64-115 (116)
249 KOG3081 Vesicle coat complex C 98.2 0.00054 1.2E-08 72.2 25.1 257 456-794 16-277 (299)
250 COG4105 ComL DNA uptake lipopr 98.2 0.0004 8.7E-09 73.5 24.4 189 579-789 34-233 (254)
251 PF13371 TPR_9: Tetratricopept 98.2 5.4E-06 1.2E-10 71.4 8.6 68 729-800 3-70 (73)
252 KOG3617 WD40 and TPR repeat-co 98.2 0.0001 2.2E-09 86.8 21.2 82 724-822 915-996 (1416)
253 KOG1070 rRNA processing protei 98.2 0.00073 1.6E-08 84.2 28.9 219 465-751 1441-1664(1710)
254 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 3.2E-05 7E-10 87.8 16.3 74 442-522 69-142 (453)
255 PF14559 TPR_19: Tetratricopep 98.2 3.8E-06 8.2E-11 71.2 6.9 65 732-800 2-66 (68)
256 COG1729 Uncharacterized protei 98.2 1.8E-05 3.8E-10 84.3 13.2 104 724-828 144-250 (262)
257 PF10345 Cohesin_load: Cohesin 98.2 0.0085 1.8E-07 73.5 38.4 350 443-811 54-467 (608)
258 PF13424 TPR_12: Tetratricopep 98.2 3.6E-06 7.8E-11 73.6 6.6 75 444-521 1-75 (78)
259 KOG0376 Serine-threonine phosp 98.2 2.1E-06 4.5E-11 96.9 6.3 102 724-829 7-108 (476)
260 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 5.7E-06 1.2E-10 93.8 9.7 68 755-822 71-141 (453)
261 KOG2796 Uncharacterized conser 98.2 0.00011 2.5E-09 76.7 18.2 139 669-826 179-319 (366)
262 COG2214 CbpA DnaJ-class molecu 98.1 2.2E-06 4.8E-11 90.5 5.1 63 865-928 5-72 (237)
263 KOG4507 Uncharacterized conser 98.1 0.00022 4.8E-09 81.5 20.8 96 456-559 221-316 (886)
264 KOG1308 Hsp70-interacting prot 98.1 3.9E-06 8.4E-11 90.8 6.7 108 440-557 106-213 (377)
265 KOG2053 Mitochondrial inherita 98.1 0.0028 6.1E-08 76.4 30.0 193 443-649 38-259 (932)
266 KOG1586 Protein required for f 98.0 0.0014 3.1E-08 67.8 22.3 195 443-702 29-230 (288)
267 PF10300 DUF3808: Protein of u 98.0 0.0071 1.5E-07 71.5 30.8 170 623-822 195-376 (468)
268 COG4700 Uncharacterized protei 98.0 0.00064 1.4E-08 68.0 17.8 152 631-822 71-222 (251)
269 PRK09430 djlA Dna-J like membr 97.9 2.7E-05 6E-10 84.6 9.2 39 864-902 198-236 (267)
270 PF06552 TOM20_plant: Plant sp 97.9 7.3E-05 1.6E-09 74.8 11.3 88 464-561 7-115 (186)
271 PRK01356 hscB co-chaperone Hsc 97.9 8.7E-06 1.9E-10 82.0 4.6 61 866-927 2-71 (166)
272 KOG0722 Molecular chaperone (D 97.9 7.1E-06 1.5E-10 84.4 3.8 66 863-929 30-98 (329)
273 PF06552 TOM20_plant: Plant sp 97.9 8.1E-05 1.8E-09 74.5 10.9 89 737-829 7-116 (186)
274 COG4700 Uncharacterized protei 97.9 0.0008 1.7E-08 67.3 17.7 129 494-694 91-220 (251)
275 KOG1308 Hsp70-interacting prot 97.9 1.4E-05 3E-10 86.6 5.3 95 725-823 118-212 (377)
276 PRK05014 hscB co-chaperone Hsc 97.9 1.5E-05 3.2E-10 80.8 5.1 60 867-927 2-72 (171)
277 KOG2300 Uncharacterized conser 97.9 0.093 2E-06 59.8 37.3 181 618-825 325-517 (629)
278 KOG1585 Protein required for f 97.8 0.0032 7E-08 65.6 21.3 63 492-554 31-99 (308)
279 KOG0720 Molecular chaperone (D 97.8 1.3E-05 2.8E-10 89.4 3.8 62 865-927 234-298 (490)
280 KOG0714 Molecular chaperone (D 97.8 2E-05 4.3E-10 87.2 4.8 65 865-930 2-71 (306)
281 PF02259 FAT: FAT domain; Int 97.8 0.043 9.4E-07 62.1 32.1 140 669-824 148-340 (352)
282 KOG1586 Protein required for f 97.8 0.0023 4.9E-08 66.3 18.6 138 674-826 81-228 (288)
283 PF10345 Cohesin_load: Cohesin 97.7 0.036 7.7E-07 68.1 32.1 327 464-820 37-431 (608)
284 KOG3616 Selective LIM binding 97.7 0.023 5E-07 66.8 27.8 81 458-549 454-554 (1636)
285 PRK03578 hscB co-chaperone Hsc 97.7 4.3E-05 9.4E-10 77.6 5.5 65 865-930 5-82 (176)
286 PF04184 ST7: ST7 protein; In 97.7 0.0038 8.2E-08 71.4 20.6 202 600-825 186-417 (539)
287 PF02259 FAT: FAT domain; Int 97.7 0.058 1.3E-06 61.1 30.9 163 612-791 142-341 (352)
288 COG2909 MalT ATP-dependent tra 97.6 0.049 1.1E-06 66.4 30.0 218 581-824 417-649 (894)
289 COG2909 MalT ATP-dependent tra 97.6 0.13 2.7E-06 63.0 33.3 266 445-747 412-685 (894)
290 PF03704 BTAD: Bacterial trans 97.6 0.0031 6.6E-08 62.2 16.1 101 724-824 9-127 (146)
291 KOG1550 Extracellular protein 97.5 0.019 4.1E-07 69.5 25.7 282 463-823 227-539 (552)
292 PRK00294 hscB co-chaperone Hsc 97.5 0.0001 2.3E-09 74.5 5.0 62 865-927 3-75 (173)
293 KOG3616 Selective LIM binding 97.5 0.041 8.9E-07 64.8 26.1 98 450-552 663-791 (1636)
294 KOG1585 Protein required for f 97.4 0.0054 1.2E-07 64.0 16.0 181 616-822 31-219 (308)
295 PF13428 TPR_14: Tetratricopep 97.4 0.00031 6.8E-09 54.3 5.2 43 760-802 2-44 (44)
296 KOG1914 mRNA cleavage and poly 97.4 0.47 1E-05 55.1 32.1 67 443-520 15-81 (656)
297 KOG1310 WD40 repeat protein [G 97.4 0.00055 1.2E-08 77.7 8.9 108 442-559 368-478 (758)
298 PF03704 BTAD: Bacterial trans 97.4 0.0055 1.2E-07 60.3 15.4 109 447-555 5-125 (146)
299 COG2976 Uncharacterized protei 97.4 0.0068 1.5E-07 61.6 15.7 150 673-825 37-191 (207)
300 PF13428 TPR_14: Tetratricopep 97.3 0.0004 8.7E-09 53.7 5.0 43 493-535 2-44 (44)
301 PF13431 TPR_17: Tetratricopep 97.3 0.00023 4.9E-09 51.8 3.2 34 781-814 1-34 (34)
302 KOG4507 Uncharacterized conser 97.3 0.0075 1.6E-07 69.5 16.7 98 728-828 614-711 (886)
303 KOG1914 mRNA cleavage and poly 97.3 0.39 8.4E-06 55.8 29.7 73 472-555 10-82 (656)
304 KOG1550 Extracellular protein 97.2 0.089 1.9E-06 63.8 26.5 268 445-791 241-541 (552)
305 PF00515 TPR_1: Tetratricopept 97.2 0.00048 1.1E-08 49.8 4.4 32 493-524 2-33 (34)
306 PF13431 TPR_17: Tetratricopep 97.2 0.00029 6.3E-09 51.3 3.0 34 514-547 1-34 (34)
307 KOG0985 Vesicle coat protein c 97.2 0.11 2.3E-06 63.7 25.7 254 493-815 1105-1376(1666)
308 PF08631 SPO22: Meiosis protei 97.2 0.13 2.8E-06 56.7 25.4 148 458-647 3-152 (278)
309 PF00515 TPR_1: Tetratricopept 97.2 0.00063 1.4E-08 49.2 4.6 32 760-791 2-33 (34)
310 COG3118 Thioredoxin domain-con 97.1 0.021 4.5E-07 61.7 17.1 134 493-648 135-268 (304)
311 KOG2610 Uncharacterized conser 97.0 0.026 5.6E-07 61.4 16.6 129 674-822 110-238 (491)
312 KOG1310 WD40 repeat protein [G 97.0 0.0023 5E-08 72.8 9.2 106 721-830 374-482 (758)
313 PF07719 TPR_2: Tetratricopept 97.0 0.0014 3.1E-08 47.1 5.1 34 448-481 1-34 (34)
314 PF04184 ST7: ST7 protein; In 97.0 0.026 5.7E-07 64.8 17.3 185 623-829 175-382 (539)
315 PF08631 SPO22: Meiosis protei 97.0 0.4 8.6E-06 52.8 26.4 118 438-555 25-150 (278)
316 PF07719 TPR_2: Tetratricopept 97.0 0.0017 3.7E-08 46.7 5.1 32 760-791 2-33 (34)
317 PF05843 Suf: Suppressor of fo 96.9 0.017 3.8E-07 63.7 15.2 136 669-828 3-142 (280)
318 PF07079 DUF1347: Protein of u 96.9 1.1 2.5E-05 51.1 40.2 344 450-818 47-520 (549)
319 PF13281 DUF4071: Domain of un 96.9 0.24 5.1E-06 56.3 24.1 174 581-792 143-338 (374)
320 KOG2610 Uncharacterized conser 96.9 0.11 2.4E-06 56.6 20.1 167 583-786 107-274 (491)
321 PF12968 DUF3856: Domain of Un 96.9 0.059 1.3E-06 50.3 15.2 98 727-824 15-131 (144)
322 COG5407 SEC63 Preprotein trans 96.8 0.0013 2.9E-08 73.1 5.2 67 865-932 97-172 (610)
323 PF04910 Tcf25: Transcriptiona 96.8 0.1 2.2E-06 59.6 20.2 167 607-793 31-227 (360)
324 PF13281 DUF4071: Domain of un 96.8 0.063 1.4E-06 60.9 18.1 176 448-649 141-338 (374)
325 KOG1464 COP9 signalosome, subu 96.7 0.16 3.6E-06 53.8 18.9 232 505-807 40-286 (440)
326 KOG0530 Protein farnesyltransf 96.7 0.25 5.5E-06 52.5 20.0 165 600-805 61-233 (318)
327 KOG0985 Vesicle coat protein c 96.7 0.18 3.9E-06 61.8 21.3 227 505-816 1088-1335(1666)
328 PRK13184 pknD serine/threonine 96.6 1.7 3.6E-05 55.4 30.4 102 454-563 481-589 (932)
329 KOG1150 Predicted molecular ch 96.6 0.0012 2.7E-08 66.0 2.4 63 866-928 53-120 (250)
330 PF05843 Suf: Suppressor of fo 96.6 0.053 1.1E-06 59.8 15.6 99 450-558 3-102 (280)
331 COG2976 Uncharacterized protei 96.5 0.085 1.8E-06 53.8 14.8 103 669-793 91-193 (207)
332 KOG0530 Protein farnesyltransf 96.4 0.41 8.8E-06 51.0 19.9 130 601-771 97-233 (318)
333 KOG0890 Protein kinase of the 96.4 3.8 8.2E-05 55.6 32.5 85 737-823 1645-1732(2382)
334 KOG2041 WD40 repeat protein [G 96.4 3.4 7.4E-05 49.4 28.9 88 443-552 791-878 (1189)
335 PF10300 DUF3808: Protein of u 96.4 0.092 2E-06 62.2 16.9 165 461-647 201-378 (468)
336 PF12968 DUF3856: Domain of Un 96.3 0.14 3E-06 47.9 13.8 104 452-555 13-129 (144)
337 COG3118 Thioredoxin domain-con 96.3 0.13 2.8E-06 55.7 15.7 153 448-633 134-289 (304)
338 PF13181 TPR_8: Tetratricopept 96.1 0.008 1.7E-07 43.2 3.9 30 494-523 3-32 (34)
339 PRK01773 hscB co-chaperone Hsc 96.1 0.0066 1.4E-07 61.6 4.6 59 866-925 2-71 (173)
340 PF13181 TPR_8: Tetratricopept 96.1 0.012 2.7E-07 42.2 4.7 31 794-824 2-32 (34)
341 KOG2041 WD40 repeat protein [G 96.0 2.1 4.6E-05 51.0 24.8 120 493-644 693-824 (1189)
342 KOG0723 Molecular chaperone (D 96.0 0.013 2.7E-07 53.2 5.5 50 868-917 58-107 (112)
343 PF08424 NRDE-2: NRDE-2, neces 96.0 0.32 7E-06 54.8 18.2 82 600-696 49-131 (321)
344 KOG3783 Uncharacterized conser 95.9 2.7 5.9E-05 49.2 25.0 68 756-823 446-521 (546)
345 KOG2396 HAT (Half-A-TPR) repea 95.9 5 0.00011 46.7 31.2 84 467-560 90-174 (568)
346 PF13176 TPR_7: Tetratricopept 95.8 0.017 3.6E-07 42.5 4.6 30 795-824 1-30 (36)
347 COG0790 FOG: TPR repeat, SEL1 95.8 1.8 3.8E-05 47.8 23.0 177 600-825 59-269 (292)
348 TIGR00714 hscB Fe-S protein as 95.8 0.011 2.4E-07 59.1 4.7 49 878-927 3-60 (157)
349 KOG1258 mRNA processing protei 95.8 6.1 0.00013 47.0 30.6 340 431-814 62-421 (577)
350 KOG3783 Uncharacterized conser 95.8 5.7 0.00012 46.7 27.4 79 466-556 251-333 (546)
351 COG5269 ZUO1 Ribosome-associat 95.7 0.0074 1.6E-07 63.1 3.3 70 861-931 38-116 (379)
352 PF04910 Tcf25: Transcriptiona 95.7 0.39 8.4E-06 54.9 17.6 166 517-698 31-224 (360)
353 PF14853 Fis1_TPR_C: Fis1 C-te 95.7 0.047 1E-06 44.0 7.1 44 760-803 2-45 (53)
354 PF15015 NYD-SP12_N: Spermatog 95.7 0.065 1.4E-06 60.0 10.4 102 453-554 181-290 (569)
355 COG0790 FOG: TPR repeat, SEL1 95.4 1.9 4E-05 47.6 21.0 189 454-696 47-266 (292)
356 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.062 1.3E-06 43.3 6.3 42 493-534 2-43 (53)
357 PF10602 RPN7: 26S proteasome 95.2 0.32 7E-06 49.8 13.0 106 442-554 30-141 (177)
358 PRK10941 hypothetical protein; 95.2 0.14 3E-06 55.9 10.9 70 491-560 180-249 (269)
359 PF13174 TPR_6: Tetratricopept 95.1 0.031 6.7E-07 39.6 3.9 32 794-825 1-32 (33)
360 KOG4814 Uncharacterized conser 95.1 8.7 0.00019 45.9 25.2 103 450-556 356-458 (872)
361 COG5107 RNA14 Pre-mRNA 3'-end 95.1 4.4 9.5E-05 46.4 22.0 314 471-823 31-363 (660)
362 KOG0890 Protein kinase of the 95.1 21 0.00046 48.9 32.6 101 719-825 1668-1787(2382)
363 KOG1463 26S proteasome regulat 95.0 6.6 0.00014 43.5 22.7 289 495-824 7-318 (411)
364 PF13176 TPR_7: Tetratricopept 95.0 0.04 8.6E-07 40.5 4.2 30 528-557 1-30 (36)
365 PF09986 DUF2225: Uncharacteri 95.0 0.16 3.4E-06 53.7 10.3 92 731-822 87-194 (214)
366 PRK10941 hypothetical protein; 94.9 0.2 4.2E-06 54.8 11.0 80 447-536 180-259 (269)
367 KOG3824 Huntingtin interacting 94.7 0.12 2.6E-06 55.7 8.4 74 452-535 120-193 (472)
368 PF13174 TPR_6: Tetratricopept 94.6 0.059 1.3E-06 38.1 4.3 33 449-481 1-33 (33)
369 COG4649 Uncharacterized protei 94.6 2.8 6.1E-05 42.2 16.9 150 622-806 64-213 (221)
370 PF04781 DUF627: Protein of un 94.5 0.27 5.8E-06 45.8 9.3 95 454-555 2-107 (111)
371 PF09986 DUF2225: Uncharacteri 94.5 0.71 1.5E-05 48.8 13.8 109 680-801 90-208 (214)
372 KOG1789 Endocytosis protein RM 94.4 0.051 1.1E-06 66.3 5.4 52 865-916 1280-1336(2235)
373 KOG3824 Huntingtin interacting 94.3 0.14 3E-06 55.3 7.7 78 722-803 117-194 (472)
374 PF04781 DUF627: Protein of un 94.2 0.44 9.5E-06 44.4 10.0 95 727-822 2-107 (111)
375 PF08424 NRDE-2: NRDE-2, neces 94.2 2.7 5.8E-05 47.4 18.6 153 468-646 5-184 (321)
376 KOG0568 Molecular chaperone (D 94.2 0.059 1.3E-06 55.2 4.6 39 865-903 46-84 (342)
377 KOG0546 HSP90 co-chaperone CPR 94.1 0.042 9.1E-07 60.6 3.6 106 723-828 224-344 (372)
378 KOG1839 Uncharacterized protei 94.1 0.54 1.2E-05 60.0 13.6 186 619-826 935-1132(1236)
379 KOG3807 Predicted membrane pro 94.1 4.2 9.1E-05 44.7 18.4 190 600-800 202-403 (556)
380 KOG1839 Uncharacterized protei 94.1 0.3 6.4E-06 62.3 11.2 190 446-695 930-1127(1236)
381 PF09613 HrpB1_HrpK: Bacterial 94.0 0.8 1.7E-05 45.7 12.1 88 446-543 8-95 (160)
382 PF14561 TPR_20: Tetratricopep 94.0 0.4 8.6E-06 43.3 9.3 66 468-543 8-75 (90)
383 KOG1464 COP9 signalosome, subu 93.9 11 0.00023 40.6 20.9 204 460-697 39-261 (440)
384 smart00028 TPR Tetratricopepti 93.9 0.08 1.7E-06 35.9 3.7 32 493-524 2-33 (34)
385 smart00028 TPR Tetratricopepti 93.9 0.09 1.9E-06 35.7 3.9 31 761-791 3-33 (34)
386 KOG0546 HSP90 co-chaperone CPR 93.6 0.12 2.5E-06 57.2 5.9 114 446-559 220-342 (372)
387 PF10602 RPN7: 26S proteasome 93.6 1.4 3E-05 45.1 13.6 101 721-822 36-142 (177)
388 PF10579 Rapsyn_N: Rapsyn N-te 93.5 0.46 1E-05 41.3 8.2 69 446-521 4-72 (80)
389 PRK15180 Vi polysaccharide bio 93.5 18 0.00039 41.8 24.1 86 734-823 711-806 (831)
390 PF15015 NYD-SP12_N: Spermatog 93.5 0.63 1.4E-05 52.4 11.2 97 726-822 181-291 (569)
391 KOG4151 Myosin assembly protei 93.4 0.18 4E-06 61.0 7.6 105 723-827 55-161 (748)
392 KOG1538 Uncharacterized conser 93.3 3.9 8.4E-05 48.6 17.6 25 450-474 587-611 (1081)
393 PRK11619 lytic murein transgly 93.2 28 0.00061 43.1 33.1 127 674-821 248-374 (644)
394 KOG3364 Membrane protein invol 93.2 1.4 3.1E-05 42.4 11.6 80 722-803 33-115 (149)
395 COG4649 Uncharacterized protei 93.1 3.4 7.4E-05 41.6 14.5 125 679-821 70-195 (221)
396 COG5159 RPN6 26S proteasome re 93.1 10 0.00022 41.2 18.9 223 530-788 7-235 (421)
397 KOG1258 mRNA processing protei 92.9 26 0.00056 41.9 32.8 319 465-828 62-401 (577)
398 KOG1538 Uncharacterized conser 92.7 8.6 0.00019 45.8 19.2 78 726-819 752-830 (1081)
399 COG1747 Uncharacterized N-term 92.5 25 0.00054 41.2 22.2 223 493-752 67-290 (711)
400 PF07079 DUF1347: Protein of u 92.4 26 0.00055 40.6 29.0 57 723-784 464-520 (549)
401 KOG4151 Myosin assembly protei 92.3 0.45 9.7E-06 57.7 8.8 110 445-560 50-161 (748)
402 COG4976 Predicted methyltransf 92.1 0.19 4E-06 52.4 4.6 60 500-559 3-62 (287)
403 PF09613 HrpB1_HrpK: Bacterial 91.9 2.1 4.5E-05 42.8 11.5 85 722-810 11-95 (160)
404 KOG0431 Auxilin-like protein a 91.9 0.061 1.3E-06 62.9 0.9 44 872-915 394-437 (453)
405 PF14561 TPR_20: Tetratricopep 91.8 1.3 2.9E-05 39.9 9.3 65 741-809 8-74 (90)
406 COG4976 Predicted methyltransf 91.5 0.21 4.6E-06 52.1 4.1 58 731-792 5-62 (287)
407 KOG2422 Uncharacterized conser 91.4 6.5 0.00014 46.4 16.4 95 608-702 276-377 (665)
408 PF04190 DUF410: Protein of un 91.2 26 0.00056 38.3 21.8 29 614-642 88-116 (260)
409 KOG1463 26S proteasome regulat 91.2 29 0.00063 38.7 26.3 253 530-816 8-272 (411)
410 PF13374 TPR_10: Tetratricopep 91.0 0.39 8.5E-06 35.7 4.4 29 493-521 3-31 (42)
411 TIGR02561 HrpB1_HrpK type III 90.9 3.2 6.9E-05 40.9 11.4 86 448-543 10-95 (153)
412 KOG3364 Membrane protein invol 90.8 1.5 3.3E-05 42.3 8.8 74 449-531 33-110 (149)
413 KOG4814 Uncharacterized conser 90.7 45 0.00098 40.2 31.4 101 725-825 358-460 (872)
414 PF13374 TPR_10: Tetratricopep 90.1 0.56 1.2E-05 34.9 4.5 28 795-822 4-31 (42)
415 COG3914 Spy Predicted O-linked 89.8 5.1 0.00011 47.4 13.8 98 727-828 73-177 (620)
416 PF12862 Apc5: Anaphase-promot 89.8 1.5 3.2E-05 39.9 7.8 65 456-521 6-70 (94)
417 PF12862 Apc5: Anaphase-promot 89.5 1.6 3.5E-05 39.6 7.9 31 795-825 43-73 (94)
418 PRK13184 pknD serine/threonine 89.5 76 0.0016 40.9 29.0 322 446-820 510-867 (932)
419 COG2912 Uncharacterized conser 89.4 2.9 6.3E-05 45.2 10.7 72 451-532 184-255 (269)
420 COG5107 RNA14 Pre-mRNA 3'-end 89.3 48 0.001 38.4 30.7 197 605-826 291-499 (660)
421 PF04053 Coatomer_WDAD: Coatom 89.0 5.8 0.00012 46.7 13.8 25 723-747 349-373 (443)
422 COG3914 Spy Predicted O-linked 88.4 18 0.0004 43.0 17.0 106 443-559 63-175 (620)
423 COG5159 RPN6 26S proteasome re 88.3 43 0.00093 36.6 25.5 220 452-696 7-235 (421)
424 PF11207 DUF2989: Protein of u 88.3 18 0.00038 37.7 15.1 75 736-814 121-199 (203)
425 COG2912 Uncharacterized conser 88.1 1.9 4.2E-05 46.6 8.3 71 758-828 180-250 (269)
426 KOG2422 Uncharacterized conser 88.0 17 0.00036 43.2 16.2 177 506-698 252-450 (665)
427 COG3629 DnrI DNA-binding trans 87.8 4.5 9.8E-05 44.3 11.0 80 737-822 137-216 (280)
428 PF10579 Rapsyn_N: Rapsyn N-te 87.6 4.7 0.0001 35.2 8.7 64 724-788 9-72 (80)
429 KOG2581 26S proteasome regulat 87.2 61 0.0013 37.1 20.0 144 672-826 131-280 (493)
430 PF00244 14-3-3: 14-3-3 protei 87.2 46 0.001 35.7 20.8 50 738-787 143-197 (236)
431 PF11207 DUF2989: Protein of u 86.9 6.8 0.00015 40.7 11.1 57 723-780 143-199 (203)
432 PF04053 Coatomer_WDAD: Coatom 86.4 39 0.00084 39.9 18.6 102 504-645 273-376 (443)
433 TIGR02561 HrpB1_HrpK type III 86.3 14 0.00029 36.6 12.2 72 487-558 5-76 (153)
434 KOG3807 Predicted membrane pro 86.1 62 0.0013 36.0 20.1 113 500-647 192-306 (556)
435 PF12739 TRAPPC-Trs85: ER-Golg 86.0 20 0.00044 41.9 16.1 28 724-751 373-400 (414)
436 PF10516 SHNi-TPR: SHNi-TPR; 85.9 1.2 2.6E-05 33.3 3.7 30 794-823 2-31 (38)
437 COG3629 DnrI DNA-binding trans 85.3 26 0.00056 38.5 15.2 66 719-788 151-216 (280)
438 KOG0529 Protein geranylgeranyl 84.8 81 0.0018 36.3 19.1 179 582-799 31-235 (421)
439 COG4941 Predicted RNA polymera 84.7 16 0.00034 40.6 13.0 187 598-828 212-400 (415)
440 KOG1920 IkappaB kinase complex 84.4 1.4E+02 0.0031 38.8 23.1 132 672-822 957-1094(1265)
441 PF10516 SHNi-TPR: SHNi-TPR; 83.9 1.4 3E-05 33.0 3.3 28 528-555 3-30 (38)
442 PF12739 TRAPPC-Trs85: ER-Golg 83.7 34 0.00075 40.0 16.6 32 450-481 210-241 (414)
443 COG1076 DjlA DnaJ-domain-conta 83.2 0.59 1.3E-05 47.7 1.5 50 866-915 113-162 (174)
444 COG1747 Uncharacterized N-term 82.3 1.1E+02 0.0025 36.1 24.7 170 581-790 101-290 (711)
445 KOG2396 HAT (Half-A-TPR) repea 81.9 17 0.00038 42.4 12.5 88 600-704 89-177 (568)
446 PRK15180 Vi polysaccharide bio 81.9 6.8 0.00015 45.1 9.2 125 503-649 300-424 (831)
447 COG3947 Response regulator con 81.4 6.1 0.00013 43.0 8.2 64 760-823 280-343 (361)
448 TIGR03362 VI_chp_7 type VI sec 80.8 51 0.0011 36.8 15.6 212 445-696 46-279 (301)
449 PF10373 EST1_DNA_bind: Est1 D 80.3 6.1 0.00013 43.0 8.4 62 467-538 1-62 (278)
450 PF07720 TPR_3: Tetratricopept 79.2 5.5 0.00012 29.4 5.0 33 449-481 2-36 (36)
451 KOG0276 Vesicle coat complex C 78.0 23 0.0005 42.2 12.0 69 468-555 627-695 (794)
452 PF07721 TPR_4: Tetratricopept 77.5 2.7 5.9E-05 28.3 2.8 23 528-550 3-25 (26)
453 PF07721 TPR_4: Tetratricopept 77.3 2.7 5.8E-05 28.3 2.7 23 795-817 3-25 (26)
454 KOG0686 COP9 signalosome, subu 75.7 28 0.0006 39.8 11.5 99 447-552 149-255 (466)
455 PF09670 Cas_Cas02710: CRISPR- 75.5 51 0.0011 38.1 14.3 66 448-521 131-198 (379)
456 PF10373 EST1_DNA_bind: Est1 D 75.0 66 0.0014 34.8 14.6 46 511-556 1-46 (278)
457 cd02682 MIT_AAA_Arch MIT: doma 74.7 18 0.0004 31.4 7.8 31 446-476 4-34 (75)
458 KOG2114 Vacuolar assembly/sort 74.4 2.1E+02 0.0046 35.9 19.1 235 500-794 342-596 (933)
459 PF06957 COPI_C: Coatomer (COP 74.2 63 0.0014 37.7 14.3 124 665-792 202-333 (422)
460 KOG0128 RNA-binding protein SA 74.0 2.5E+02 0.0053 35.3 29.4 98 448-556 113-220 (881)
461 KOG2063 Vacuolar assembly/sort 73.8 1.2E+02 0.0026 38.7 17.5 50 502-555 484-533 (877)
462 PF07720 TPR_3: Tetratricopept 73.7 8.6 0.00019 28.4 4.8 21 795-815 3-23 (36)
463 PF11817 Foie-gras_1: Foie gra 73.4 22 0.00047 38.4 10.1 63 491-553 177-245 (247)
464 KOG2066 Vacuolar assembly/sort 72.7 2.1E+02 0.0046 35.6 18.5 354 500-894 364-746 (846)
465 COG3947 Response regulator con 71.9 14 0.00031 40.3 7.8 62 493-554 280-341 (361)
466 PF00244 14-3-3: 14-3-3 protei 71.8 1.5E+02 0.0032 31.9 19.3 59 494-552 3-63 (236)
467 PF11817 Foie-gras_1: Foie gra 71.7 17 0.00038 39.2 8.8 70 446-519 176-245 (247)
468 PF04190 DUF410: Protein of un 71.0 1.6E+02 0.0035 32.0 20.9 158 443-608 5-170 (260)
469 COG3014 Uncharacterized protei 69.8 2E+02 0.0042 32.5 16.9 80 467-555 40-154 (449)
470 TIGR03504 FimV_Cterm FimV C-te 68.4 11 0.00024 29.2 4.5 25 797-821 3-27 (44)
471 KOG0276 Vesicle coat complex C 68.2 44 0.00095 40.1 11.2 106 675-822 645-750 (794)
472 PF04097 Nic96: Nup93/Nic96; 67.6 3.1E+02 0.0067 33.9 21.5 26 800-826 512-537 (613)
473 KOG2280 Vacuolar assembly/sort 67.3 3.2E+02 0.007 34.0 20.7 43 766-816 751-793 (829)
474 KOG1920 IkappaB kinase complex 66.9 1.7E+02 0.0037 38.1 16.6 23 530-552 884-906 (1265)
475 COG4455 ImpE Protein of avirul 65.7 1.3E+02 0.0028 32.0 12.8 62 498-559 7-68 (273)
476 PF10255 Paf67: RNA polymerase 65.5 17 0.00037 42.0 7.4 65 723-788 124-193 (404)
477 PF09670 Cas_Cas02710: CRISPR- 63.4 1.1E+02 0.0025 35.3 13.7 137 671-825 135-273 (379)
478 COG5187 RPN7 26S proteasome re 62.8 2.3E+02 0.005 31.3 14.5 105 668-788 116-221 (412)
479 PF05053 Menin: Menin; InterP 62.8 1.6E+02 0.0035 35.4 14.4 56 632-699 295-350 (618)
480 PF10952 DUF2753: Protein of u 61.4 65 0.0014 30.9 8.9 82 619-702 4-89 (140)
481 cd02682 MIT_AAA_Arch MIT: doma 61.4 35 0.00075 29.8 6.7 30 796-825 9-38 (75)
482 COG4455 ImpE Protein of avirul 61.2 50 0.0011 34.8 9.0 62 455-526 8-69 (273)
483 COG5191 Uncharacterized conser 61.2 17 0.00038 39.9 5.9 82 470-561 95-177 (435)
484 PF10255 Paf67: RNA polymerase 60.9 16 0.00034 42.3 6.0 67 721-791 164-231 (404)
485 PF14863 Alkyl_sulf_dimr: Alky 59.1 24 0.00052 34.7 6.2 51 493-543 71-121 (141)
486 KOG4322 Anaphase-promoting com 59.0 2E+02 0.0043 33.4 13.9 190 443-700 268-475 (482)
487 COG3014 Uncharacterized protei 58.7 3.1E+02 0.0068 31.0 16.8 76 620-695 62-153 (449)
488 KOG0687 26S proteasome regulat 58.7 3.1E+02 0.0067 30.9 17.1 104 669-788 106-210 (393)
489 KOG0889 Histone acetyltransfer 58.4 8.7E+02 0.019 36.0 27.6 122 666-804 2735-2857(3550)
490 TIGR03504 FimV_Cterm FimV C-te 57.9 16 0.00035 28.3 3.7 27 529-555 2-28 (44)
491 PF14863 Alkyl_sulf_dimr: Alky 57.9 43 0.00093 33.0 7.7 52 578-632 69-120 (141)
492 KOG2063 Vacuolar assembly/sort 57.8 5.2E+02 0.011 33.2 24.8 185 618-827 506-718 (877)
493 COG5191 Uncharacterized conser 57.7 17 0.00036 40.0 5.1 80 443-532 102-182 (435)
494 PF10952 DUF2753: Protein of u 57.5 47 0.001 31.7 7.4 77 449-525 2-87 (140)
495 PF03656 Pam16: Pam16; InterP 57.2 20 0.00043 34.6 5.1 44 868-911 60-103 (127)
496 KOG2758 Translation initiation 57.2 2.2E+02 0.0049 31.8 13.4 118 706-827 77-201 (432)
497 PF06957 COPI_C: Coatomer (COP 56.6 1.1E+02 0.0023 35.9 11.7 105 722-826 205-333 (422)
498 PF04212 MIT: MIT (microtubule 55.9 25 0.00055 29.7 5.1 32 446-477 3-34 (69)
499 KOG4014 Uncharacterized conser 55.6 2.5E+02 0.0055 28.9 16.0 163 614-824 32-235 (248)
500 TIGR02710 CRISPR-associated pr 55.5 1.5E+02 0.0033 34.1 12.6 103 448-555 130-275 (380)
No 1
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=100.00 E-value=2.1e-46 Score=391.51 Aligned_cols=440 Identities=20% Similarity=0.255 Sum_probs=379.7
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...|..++..+++|..++..|+|..|+..|..||+.+|++. .+++.+|.+|+.+|+-..|+.++.++|++
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y----------~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY----------QAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH----------HHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 34578889999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
.|++..+...+|.+++++|++++|...|..+|..+|.+. ...++...+...+........+..++..|++. .+
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~----~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~---~a 174 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG----LVLEAQSKLALIQEHWVLVQQLKSASGSGDCQ---NA 174 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc----hhHHHHHHHHhHHHHHHHHHHHHHHhcCCchh---hH
Confidence 999999999999999999999999999999999999653 23455555666666666666677777888888 78
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
++.+...|++.|+++.++..++.||...|+...||..++.+-++..++.+ .++.++.+++..|
T Consensus 175 i~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe-----------------~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE-----------------GHYKISQLLYTVG 237 (504)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH-----------------HHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999887755 6788999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
+.+.++...++||+++|++.. +...++.++.+.....-+......++|.++++.+++.++.+|...+.....
T Consensus 238 d~~~sL~~iRECLKldpdHK~--------Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~ 309 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLDPDHKL--------CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNG 309 (504)
T ss_pred hHHHHHHHHHHHHccCcchhh--------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeee
Confidence 999999999999999999866 444555666666666677888999999999999999999998766667777
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcch
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTI 841 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~ 841 (954)
+..+..|+..-+++-+||+.|.++|.++|+++.++..+|.+|+....|+.||.+|++|+++++++. .
T Consensus 310 ~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~-------------~ 376 (504)
T KOG0624|consen 310 FRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT-------------R 376 (504)
T ss_pred eheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH-------------H
Confidence 888899999999999999999999999999999999999999999999999999999999955544 4
Q ss_pred hhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh----HHH---HHHHHHHH
Q 002199 842 SSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD----QEQ---EIRKATKE 914 (954)
Q Consensus 842 ~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~----~~e---~~~~~~~~ 914 (954)
+...+.+|++.+ ++....|||+||||.++++..||.|||||+|.+||||.-.+.. ++. +|..+-++
T Consensus 377 ~reGle~Akrlk-------kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEV 449 (504)
T KOG0624|consen 377 AREGLERAKRLK-------KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEV 449 (504)
T ss_pred HHHHHHHHHHHH-------HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHh
Confidence 456777776643 4456789999999999999999999999999999999977654 222 35555677
Q ss_pred CCCCCcccccccccCCC-----CCCCCCCcccccc
Q 002199 915 SPQNSHYGRSSDAYGYA-----CRSSRRQSRQDNW 944 (954)
Q Consensus 915 l~~~~~~r~~yD~~g~~-----~~~~~~~~~~~~~ 944 (954)
|++ |++|+.||..-+| .+++.+..+..||
T Consensus 450 Lsd-~EkRrqFDnGeDPLD~Es~q~GGGg~~Hgf~ 483 (504)
T KOG0624|consen 450 LSD-PEKRRQFDNGEDPLDPESQQGGGGGPFHGFW 483 (504)
T ss_pred hcC-HHHHhhccCCCCCCChhhccCCCCCCCCCCc
Confidence 775 9999999987766 2233333445555
No 2
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-39 Score=344.05 Aligned_cols=394 Identities=29% Similarity=0.392 Sum_probs=339.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....-..++....+|+.++++.+|..|+..|+.||+++|++. ..|.+++.+++.+++|++|+-++++.+
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a----------~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNA----------SYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccch----------hhhchhHHHHHHHHhHhhcccchhhhe
Confidence 3445566788899999999999999999999999999999996 999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
+++|...+.+.+.++|+..+++..+|.+.|+.. .| + .+.
T Consensus 111 r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~---~~------------------------~--------------~~a 149 (486)
T KOG0550|consen 111 RLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK---QA------------------------Y--------------KAA 149 (486)
T ss_pred ecCCCccccccchhhhhhhhHHHHHHHHHhhhh---hh------------------------h--------------HHh
Confidence 999999999999999999999999999888721 11 0 111
Q ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 600 SALERINEALSIS---SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 600 eAL~~l~kaL~~~---P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
.++..+++.+... |.-..+....+.|+..++++++|+..--.++++++.+.. +++..|.+
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~-----------------al~vrg~~ 212 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE-----------------ALYVRGLC 212 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH-----------------HHHhcccc
Confidence 3444444444332 444567788899999999999999999999999998855 77889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
++..++.+.|+.+|+++|.++|++.. ........+.+..+...|+-.++.|+|..|.++|..||.++|.+..
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~--------sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQK--------SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhh--------HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 99999999999999999999998866 3445566777888999999999999999999999999999999989
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCC
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRS 836 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~ 836 (954)
.++.+|+++|.+...+|+..+||.+|+.|+.|+|.+++++..+|.|++.+++|++|+++|++++++...
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s----------- 353 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD----------- 353 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999998322
Q ss_pred CCcchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHH-----HHHHHH
Q 002199 837 PGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQE-----QEIRKA 911 (954)
Q Consensus 837 P~~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~-----e~~~~~ 911 (954)
...++.+++++. ++++.+.+|||+|||+.+.+++.||+++||++||.||||++....++ .++.++
T Consensus 354 ---~e~r~~l~~A~~-------aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeA 423 (486)
T KOG0550|consen 354 ---CEIRRTLREAQL-------ALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEA 423 (486)
T ss_pred ---cchHHHHHHHHH-------HHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHH
Confidence 223345555544 44677789999999999999999999999999999999998765322 345567
Q ss_pred HHHCCCCCcccccccccCCC
Q 002199 912 TKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 912 ~~~l~~~~~~r~~yD~~g~~ 931 (954)
|..+++ +.+|..||+..+-
T Consensus 424 y~il~d-~~kr~r~dsg~dl 442 (486)
T KOG0550|consen 424 YTILSD-PMKRVRFDSGQDL 442 (486)
T ss_pred HHHhcC-HHHHhhcccccch
Confidence 888886 8999999986544
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-35 Score=326.78 Aligned_cols=313 Identities=17% Similarity=0.161 Sum_probs=254.0
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...|.-+++|.++|+.+-..|++++|+.+|+.+|++.|+.. .+|.++|.++...|+.+.|..+|..||++
T Consensus 110 r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fi----------da~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFI----------DAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred hccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhh----------HHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 34577889999999999999999999999999999999986 99999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
+|+...++..+|.++..+|+..+|..+|.+|++..|.. +..|-+++..+..+|+.. .|
T Consensus 180 nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-------------------AiawsnLg~~f~~~Gei~---~a 237 (966)
T KOG4626|consen 180 NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-------------------AIAWSNLGCVFNAQGEIW---LA 237 (966)
T ss_pred CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce-------------------eeeehhcchHHhhcchHH---HH
Confidence 99999999999999999999999999999999999965 345667777777777777 78
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
|..|.+++.++|....+|++||.+|-..+.|++|+..|.+++.+.|.... ++-++|.+|+.+|
T Consensus 238 iq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~-----------------a~gNla~iYyeqG 300 (966)
T KOG4626|consen 238 IQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV-----------------AHGNLACIYYEQG 300 (966)
T ss_pred HHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh-----------------hccceEEEEeccc
Confidence 88888888888888888888888888888888888888888888887754 5667788888888
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
..+-|+..|++++.+.|..+. ++.++|+++-..|+..+|+.+|.+||.++ |..+.+
T Consensus 301 ~ldlAI~~Ykral~~~P~F~~--------------------Ay~NlanALkd~G~V~ea~~cYnkaL~l~----p~hada 356 (966)
T KOG4626|consen 301 LLDLAIDTYKRALELQPNFPD--------------------AYNNLANALKDKGSVTEAVDCYNKALRLC----PNHADA 356 (966)
T ss_pred cHHHHHHHHHHHHhcCCCchH--------------------HHhHHHHHHHhccchHHHHHHHHHHHHhC----CccHHH
Confidence 888888888888888887654 55666666666666666666666666666 566666
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++|||.+|..+|.+++|...|.++++..|....++.+||.+|.++|++++|+.+|+.+|.|.|...
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 666666666666666666666666666666666666666666666666666666666666644433
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-34 Score=318.50 Aligned_cols=335 Identities=18% Similarity=0.168 Sum_probs=248.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc----cCCc--------------------hHHHHHH
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAG----CCIK--------------------PLVLCYS 496 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~----~~~~--------------------~la~~~~ 496 (954)
....|+.+++|..+|..+..+|+...|..+|..||+++|....+. ...+ .++.+|.
T Consensus 143 iel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaws 222 (966)
T KOG4626|consen 143 IELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWS 222 (966)
T ss_pred HhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeeh
Confidence 345577778888888888888888888888888888877654100 0000 0234555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH
Q 002199 497 NRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKA 576 (954)
Q Consensus 497 ~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~ 576 (954)
++|-++..+|+.-.||..|++|+.++|.++.+|++||.+|..++.|+.|+.+|.+|+.+.|..
T Consensus 223 nLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~----------------- 285 (966)
T KOG4626|consen 223 NLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH----------------- 285 (966)
T ss_pred hcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc-----------------
Confidence 666666666666666666666666666666666666666666666666666666666665544
Q ss_pred HhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhc
Q 002199 577 QKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLAD 656 (954)
Q Consensus 577 ~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~ 656 (954)
+..+-+++..|+.+|..+ -||..|+++|.+.|..+.++.++|.++-..|+..+|..+|.++|.+.|....
T Consensus 286 --A~a~gNla~iYyeqG~ld---lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had----- 355 (966)
T KOG4626|consen 286 --AVAHGNLACIYYEQGLLD---LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD----- 355 (966)
T ss_pred --hhhccceEEEEeccccHH---HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH-----
Confidence 334455566677777777 6777788888888888888888888888888888888888888888776654
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002199 657 NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR 736 (954)
Q Consensus 657 ~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~ 736 (954)
+.++||.+|..+|.+++|..+|.++++..|.. +.++.++|.+|.++|+
T Consensus 356 ------------am~NLgni~~E~~~~e~A~~ly~~al~v~p~~--------------------aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 356 ------------AMNNLGNIYREQGKIEEATRLYLKALEVFPEF--------------------AAAHNNLASIYKQQGN 403 (966)
T ss_pred ------------HHHHHHHHHHHhccchHHHHHHHHHHhhChhh--------------------hhhhhhHHHHHHhccc
Confidence 56777888888888888888888887776644 3467889999999999
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
+++|+.+|+.||.+. |..+.+|.|+|..|..+|+...|+.+|.+||.++|.+++|+.+||.+|...|+..+||..|
T Consensus 404 l~~Ai~~YkealrI~----P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIK----PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHhcC----chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 999999999999998 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHH
Q 002199 817 QRLVSILENQSAEKAKQSRSPGRTISSRDLRQACR 851 (954)
Q Consensus 817 ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~ 851 (954)
+.+|++ .|+.+.+...+..+.+
T Consensus 480 ~~aLkl-------------kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 480 RTALKL-------------KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHcc-------------CCCCchhhhHHHHHHH
Confidence 999999 4555555555555544
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.8e-29 Score=307.52 Aligned_cols=332 Identities=17% Similarity=0.180 Sum_probs=274.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
........+..+..+|+.++..|+|++|+.+|+++|.+.|+ + ..|.++|.||+.+|++++|+.+|+++|
T Consensus 119 ~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~----------~~~~n~a~~~~~l~~~~~Ai~~~~~al 187 (615)
T TIGR00990 119 SEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P----------VYYSNRAACHNALGDWEKVVEDTTAAL 187 (615)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h----------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444566889999999999999999999999999999996 3 789999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHH------HHHHHHHHHh-----------H---
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE------AADGLQKAQK-----------V--- 579 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~e------a~~~l~~~~~-----------~--- 579 (954)
+++|++.++++++|.+|..+|++++|+..|..++.+++..........+ +......... +
T Consensus 188 ~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 188 ELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999998887665432110000000 0000000000 0
Q ss_pred ------------------------HHHHHHHHHHHH---hcChHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHc
Q 002199 580 ------------------------TEYINCSGKLLE---QKTSEAASSALERINEALSI---SSCSEKLLEMKADALYML 629 (954)
Q Consensus 580 ------------------------~~~l~~a~~ll~---~g~~~~a~eAL~~l~kaL~~---~P~~~~~~~~lA~~~~~l 629 (954)
..++.++..... .+.|+ +|+..|++++.. .|....++..+|.+++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~---~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE---EAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH---HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 000111111111 13444 788889999976 477788999999999999
Q ss_pred cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH
Q 002199 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE 709 (954)
Q Consensus 630 g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~ 709 (954)
|++++|+..|++++.++|.... .|+.+|.++..+|++++|+..|++++.++|.+..
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~-----------------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------- 400 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQ-----------------SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD------- 400 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------
Confidence 9999999999999999997643 6888999999999999999999999999887644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 710 ~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
.+..+|.+++..|++++|+.+|++++.++ |.+..++.++|.++..+|++++|+..|++++.+.
T Consensus 401 -------------~~~~lg~~~~~~g~~~~A~~~~~kal~l~----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 401 -------------IYYHRAQLHFIKGEFAQAGKDYQKSIDLD----PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56678999999999999999999999998 7778889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 790 P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
|+++.++..+|.++..+|++++|+..|++++++.|..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999997753
No 6
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.2e-28 Score=264.33 Aligned_cols=351 Identities=19% Similarity=0.190 Sum_probs=244.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
.....+..+..+|+.+|++|+|++||++|++||.++|+.+ ..|.|++.||..+|+|++.++++.+||+++
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep----------iFYsNraAcY~~lgd~~~Vied~TkALEl~ 179 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP----------IFYSNRAACYESLGDWEKVIEDCTKALELN 179 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc----------hhhhhHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 3456788999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH------------------HHhhc--------------h---hhh-------
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHK------------------LLNSA--------------A---AVC------- 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yek------------------aL~l~--------------P---~~~------- 560 (954)
|++.+++++++.++..+|++.+|+....- .|+.. | ...
T Consensus 180 P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 180 PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 99999999999999999999999876532 11110 0 000
Q ss_pred -------------h--hHHHHHHHHHHHHHH--------Hh-------------------------HHHHHHHHHHHHHh
Q 002199 561 -------------L--DRRITIEAADGLQKA--------QK-------------------------VTEYINCSGKLLEQ 592 (954)
Q Consensus 561 -------------~--~~~~~~ea~~~l~~~--------~~-------------------------~~~~l~~a~~ll~~ 592 (954)
. .........+.+... .. +..+...+.-++-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0 000011111111100 00 01111111112222
Q ss_pred cChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHH
Q 002199 593 KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRL 672 (954)
Q Consensus 593 g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~ 672 (954)
|++- .|...++.+|.++|....+|..+|.+|+...+-++-...|.++..++|.+.. .|+.
T Consensus 340 g~~~---~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d-----------------vYyH 399 (606)
T KOG0547|consen 340 GDSL---GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD-----------------VYYH 399 (606)
T ss_pred CCch---hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc-----------------hhHh
Confidence 3333 4555666666666666666666666666666666666667776666666654 5666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH---------HH--------HHHHHHHHHHHHHHHcC
Q 002199 673 ISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG---------TV--------RALLHHKSAGNEAFKSG 735 (954)
Q Consensus 673 Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~---------~~--------~~~~~~~~lG~~~~~~g 735 (954)
+|++++-++++++|+.-|++++.++|.+.-... ..+..+++ .. .....+...|.++..++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i---Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPENAYAYI---QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence 666666666666666666666666665543221 11111111 00 11234556799999999
Q ss_pred CHHHHHHHHHHHHhhccCCc--hhhHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 736 RYTEAVEHYTVALSTNIESR--PFAAICFCNRAAALQ-ALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~--p~~a~~~~~lA~~y~-~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
+|+.|++.|++|+.+.|..+ ...+..+.+.|.+.. -.+++.+|+..+++|+++||..-.|+..||.+..++|+.++|
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999985321 114455555554443 348999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 002199 813 ASDLQRLVSILENQ 826 (954)
Q Consensus 813 i~~~ekAL~l~p~~ 826 (954)
+++|++++.+....
T Consensus 557 ielFEksa~lArt~ 570 (606)
T KOG0547|consen 557 IELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHHhH
Confidence 99999999985433
No 7
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.5e-28 Score=266.87 Aligned_cols=354 Identities=25% Similarity=0.324 Sum_probs=281.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
+..+..+|+..+..|+|+.|+.+|+.||.++|.++ .+|.|+..+|..+|+|++|+++..+.++++|++++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh----------vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k 71 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH----------VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK 71 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCcc----------chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh
Confidence 34577899999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh-----------------------------
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK----------------------------- 578 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~----------------------------- 578 (954)
+|.++|..+.-+|+|++|+..|.+.|+.+|++..-...+.++.........
T Consensus 72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 72 GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHH
Confidence 999999999999999999999999999999886443333332211100000
Q ss_pred ------------------------------------------------------------------------HHHHHHHH
Q 002199 579 ------------------------------------------------------------------------VTEYINCS 586 (954)
Q Consensus 579 ------------------------------------------------------------------------~~~~l~~a 586 (954)
....-.++
T Consensus 152 l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 152 LEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred HHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 11112223
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHH
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLAR 666 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~ 666 (954)
...+...++. .|++.|..++.++ .+...+.+.|-+|+.+|.+.+++..+..+++......... .. +.+
T Consensus 232 naaykkk~f~---~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~----kl----Iak 299 (539)
T KOG0548|consen 232 NAAYKKKDFE---TAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY----KL----IAK 299 (539)
T ss_pred HHHHHhhhHH---HHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH----HH----HHH
Confidence 3344444444 7899999999999 8899999999999999999999999999887765443211 11 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcch-hhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 667 LWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRY-GSEILESSMSL-----AGTVRALLHHKSAGNEAFKSGRYTEA 740 (954)
Q Consensus 667 l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~-~~~~l~~~~~l-----~~~~~~~~~~~~lG~~~~~~g~~eeA 740 (954)
....+|..|...++++.|+.+|++++.-....... .....+..... +............|+.+|..|+|..|
T Consensus 300 --~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 300 --ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred --HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 23347889999999999999999998754431110 01111111111 11223345556779999999999999
Q ss_pred HHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 741 VEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 741 i~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
+.+|++||..+ |.++.+|.|+|.||.+++.+..|+.+++++|+++|++..+|++.|.++..+.+|+.|++.|+.++
T Consensus 378 v~~YteAIkr~----P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 378 VKHYTEAIKRD----PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHhcC----CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHH
Q 002199 821 SILENQSAE 829 (954)
Q Consensus 821 ~l~p~~~~~ 829 (954)
+++|++.+.
T Consensus 454 e~dp~~~e~ 462 (539)
T KOG0548|consen 454 ELDPSNAEA 462 (539)
T ss_pred hcCchhHHH
Confidence 997766554
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=8.1e-27 Score=284.30 Aligned_cols=328 Identities=16% Similarity=0.170 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL- 526 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~- 526 (954)
...|..+|.+|+..|+|++|+..|+++|+++|++. .+|+.+|.+|..+|++++|+.+|..++.+++...
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~----------~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~ 229 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS----------KALNRRANAYDGLGKYADALLDLTASCIIDGFRNE 229 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence 45799999999999999999999999999999987 8999999999999999999887765543322110
Q ss_pred -----------------------------H---------------------------------HHHHHHHHH---HHcCC
Q 002199 527 -----------------------------K---------------------------------VYMRAAKCH---LVLGE 541 (954)
Q Consensus 527 -----------------------------~---------------------------------a~~~LA~iy---~~lG~ 541 (954)
. ++..++..+ ...++
T Consensus 230 ~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 230 QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhh
Confidence 0 001111110 01134
Q ss_pred HHHHHHHHHHHHhhc---hhhhhhHH----------HHHHHHHHHHHHHh-----HHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 542 IENAQHYYHKLLNSA---AAVCLDRR----------ITIEAADGLQKAQK-----VTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 542 ~eeAl~~yekaL~l~---P~~~~~~~----------~~~ea~~~l~~~~~-----~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
|++|+..|++++... |....... ...++...+.++.. ...++.++..+...|+++ +|+.
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~---eA~~ 386 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD---KAEE 386 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH---HHHH
Confidence 555555555555542 22110000 00111111111111 344566677777777777 6777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.|.+++.++|.++.+++.+|.+++.+|++++|+..|++++.+.|++.. .+..+|.+++.+|++
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~-----------------~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF-----------------SHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH-----------------HHHHHHHHHHHCCCH
Confidence 777777777777777777777777777777777777777777776532 566677777777777
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhh--HHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFA--AIC 761 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~--a~~ 761 (954)
++|+..|++++...|.+.. .+..+|.++...|++++|+..|++++.+.|...+.. ...
T Consensus 450 ~eA~~~~~~al~~~P~~~~--------------------~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPD--------------------VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 7777777777777665533 566789999999999999999999999986543322 222
Q ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 762 FCNRAAAL-QALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 762 ~~~lA~~y-~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+.+.+.++ ...|++++|+..|++++.++|++..++..+|.++..+|++++|+.+|++++++.+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33444444 44799999999999999999999999999999999999999999999999999654
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=3.2e-26 Score=279.24 Aligned_cols=313 Identities=13% Similarity=0.051 Sum_probs=279.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....|...++++.+|...+..|++++|+..|++++.++|++. .++..+|.++..+|++++|+..|+++++
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~----------~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP----------EDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999999999997 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
++|+++.++..+|.++..+|++++|+..|++++...|+.. ..+... ..++..|+++ +
T Consensus 139 l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-------------------~a~~~~-~~l~~~g~~~---e 195 (656)
T PRK15174 139 AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-------------------DMIATC-LSFLNKSRLP---E 195 (656)
T ss_pred hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-------------------HHHHHH-HHHHHcCCHH---H
Confidence 9999999999999999999999999999999999888642 112222 2367788888 7
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 601 ALERINEALSISS-CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 601 AL~~l~kaL~~~P-~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
|+..+.+++...| ........++.++...|++++|+..|++++.+.|.+.. .++.+|.+|..
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~-----------------~~~~Lg~~l~~ 258 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA-----------------LRRSLGLAYYQ 258 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHH
Confidence 7888888888875 34455566789999999999999999999999987744 67789999999
Q ss_pred cCCHHH----HHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc
Q 002199 680 IGKLEV----ALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR 755 (954)
Q Consensus 680 lG~~ee----Al~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~ 755 (954)
.|++++ |+..|++++.++|.+.. ++..+|.++...|++++|+.+|++++.++
T Consensus 259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~--------------------a~~~lg~~l~~~g~~~eA~~~l~~al~l~---- 314 (656)
T PRK15174 259 SGRSREAKLQAAEHWRHALQFNSDNVR--------------------IVTLYADALIRTGQNEKAIPLLQQSLATH---- 314 (656)
T ss_pred cCCchhhHHHHHHHHHHHHhhCCCCHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 999986 89999999999997643 56678999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|.++.++.++|.+|..+|++++|+..|++++..+|.+..++..+|.++..+|++++|+..|++++++.|+..
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 778889999999999999999999999999999999988888889999999999999999999999988764
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3.1e-25 Score=287.49 Aligned_cols=372 Identities=15% Similarity=0.054 Sum_probs=274.5
Q ss_pred cccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCc----hHHHHHHHHH
Q 002199 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIK----PLVLCYSNRA 499 (954)
Q Consensus 424 ~~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~----~la~~~~~lA 499 (954)
+...+....+.+. ....|..++++..+|..+++.|++++|+.+|+++++++|++.....+.. .....+..+|
T Consensus 283 g~~~~A~~~l~~a----L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 283 GQGGKAIPELQQA----VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3334444444442 2234666889999999999999999999999999999998641100000 0122345668
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH--------
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD-------- 571 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~-------- 571 (954)
.+++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|.+......+.....
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999987543322222111
Q ss_pred -HHH--------------HHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 002199 572 -GLQ--------------KAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAI 636 (954)
Q Consensus 572 -~l~--------------~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi 636 (954)
.+. .......+..++..+...++++ +|+..|++++.++|+++.+++.+|.+|..+|++++|+
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~---eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWA---QAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 010 0111223445677788889998 8999999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHH-----H
Q 002199 637 QLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILES-----S 711 (954)
Q Consensus 637 ~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~-----~ 711 (954)
..++++++..|.+.. .++.++..+...+++++|+..++++........ ...+... .
T Consensus 516 ~~l~~al~~~P~~~~-----------------~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~--~~~l~~~l~~~~~ 576 (1157)
T PRK11447 516 ALMRRLAQQKPNDPE-----------------QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN--IQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHcCCCCHH-----------------HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh--HHHHHHHHhhhHH
Confidence 999999999987754 455667777778888888887776532211100 0000000 0
Q ss_pred ----------------HHH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC
Q 002199 712 ----------------MSL-AGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 712 ----------------~~l-~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
..+ .........+..+|.++...|++++|+..|++++.++ |.+..+++++|.+|..+|+
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----PGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC
Confidence 000 0000112345567888888888888888888888887 6677888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 775 IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+++|+..|++++...|+++.++..+|.++..+|++++|+..|++++...|+
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 888888888888888888888888888888888888888888888887554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=5.5e-25 Score=268.47 Aligned_cols=306 Identities=13% Similarity=0.047 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
..-+......+++.|++.+|+..+..++...|.+. .+++.+|.+.+..|++++|+..|+++++++|+++.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~----------~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~ 111 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR----------DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE 111 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch----------hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH
Confidence 34566778889999999999999999999999997 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
++..+|.++..+|++++|+..|++++.++|++ ...+..++..+...|+++ +|+..+.+
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-------------------~~a~~~la~~l~~~g~~~---eA~~~~~~ 169 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFSGN-------------------SQIFALHLRTLVLMDKEL---QAISLART 169 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHCCChH---HHHHHHHH
Confidence 99999999999999999999999999999975 445677788899999999 77888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
++...|.++.++..++ .++..|++++|+..+++++...|.... ..+..++.++...|++++|+
T Consensus 170 ~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~----------------~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 170 QAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ----------------ESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred HHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch----------------hHHHHHHHHHHHCCCHHHHH
Confidence 9999999988887764 488999999999999999888653211 02345688899999999999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhccCCchhhHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE----AVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee----Ai~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
..|++++.+.|.+.. .+..+|.++...|++++ |+..|++++.++ |..+.++.
T Consensus 233 ~~~~~al~~~p~~~~--------------------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~----P~~~~a~~ 288 (656)
T PRK15174 233 QTGESALARGLDGAA--------------------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN----SDNVRIVT 288 (656)
T ss_pred HHHHHHHhcCCCCHH--------------------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC----CCCHHHHH
Confidence 999999999887643 55668999999999996 899999999999 77889999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|.++..+|++++|+..+++++.++|+++.++..+|.+|..+|++++|+..|++++...|+.
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999999999999999996654
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=4.2e-24 Score=269.16 Aligned_cols=327 Identities=17% Similarity=0.177 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..+..+|..+...|++++|+.+|+++++.+|.+. .++.++|.++...|++++|+..|++++..+|.+.
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF----------PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence 345566666666666666666666666666666665 5666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.++..++.++...|++++|+..|++++..+|.. ...++.++..+...|+++ +|+..+.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~---~A~~~~~ 591 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQE-------------------IEPALALAQYYLGKGQLK---KALAILN 591 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------------------hhHHHHHHHHHHHCCCHH---HHHHHHH
Confidence 666666666666666666666666666666543 334556677777788888 7778888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 607 EALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVA 686 (954)
Q Consensus 607 kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeA 686 (954)
+++...|.++.++..+|.++...|++++|+..|+++++..|.+.. .+..+|.+|...|++++|
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL-----------------ALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHcCCHHHH
Confidence 888888888888888888888888888888888888888776543 567788888888888888
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHH---------HHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002199 687 LDLLQKLEQVGSISDRYGSEILESSM---------SLAGT-----VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 687 l~~l~kal~l~p~~~~~~~~~l~~~~---------~l~~~-----~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~ 752 (954)
+..|++++...|.+............ .+... ......+..+|.+++..|++++|+..|.+++...|
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 655 ITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 88888888888876543322111111 11111 11234566789999999999999999999999984
Q ss_pred CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 753 ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 753 ~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
. . ..+..++.++...|++++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++..|++.
T Consensus 735 ~----~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 735 S----S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred C----c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH
Confidence 3 3 67788999999999999999999999999999999999999999999999999999999999966543
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=5e-24 Score=276.25 Aligned_cols=318 Identities=15% Similarity=0.107 Sum_probs=262.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-----
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK----- 527 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~----- 527 (954)
.+|..++..|++++|+..|+++++.+|.+. .++..+|.+|+.+|++++|+..|+++++++|++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~----------~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDS----------EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 568999999999999999999999999987 89999999999999999999999999999997642
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHH
Q 002199 528 ---------VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598 (954)
Q Consensus 528 ---------a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a 598 (954)
.+..+|.++...|++++|+..|++++.++|.+ ...++.++..+...|+++
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-------------------~~a~~~Lg~~~~~~g~~~-- 402 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD-------------------SYAVLGLGDVAMARKDYA-- 402 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHCCCHH--
Confidence 23456889999999999999999999999975 344667788888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHH------------------------------------------HHHHHHccCHHHHH
Q 002199 599 SSALERINEALSISSCSEKLLEMK------------------------------------------ADALYMLRKYEEAI 636 (954)
Q Consensus 599 ~eAL~~l~kaL~~~P~~~~~~~~l------------------------------------------A~~~~~lg~~eeAi 636 (954)
+|+..|++++.++|.+..++..+ |.++...|++++|+
T Consensus 403 -eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 403 -AAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred -HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 77888888888888876655444 44555678999999
Q ss_pred HHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH-------
Q 002199 637 QLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE------- 709 (954)
Q Consensus 637 ~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~------- 709 (954)
..|++++++.|++. |+++.+|.+|...|++++|+..|++++.+.|.+.........
T Consensus 482 ~~~~~Al~~~P~~~-----------------~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 482 ELQRQRLALDPGSV-----------------WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC
Confidence 99999999988763 478889999999999999999999999999987654321100
Q ss_pred --HHHHHHHH---------H------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh
Q 002199 710 --SSMSLAGT---------V------RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL 772 (954)
Q Consensus 710 --~~~~l~~~---------~------~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l 772 (954)
........ + .....+..++..+...|++++|+.+++ .. |.++.+++.+|.++..+
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~----p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQ----PPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hC----CCCchHHHHHHHHHHHc
Confidence 00000000 0 011223467888999999999999877 34 66778889999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 773 GQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 773 g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.|++.
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL 671 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh
Confidence 9999999999999999999999999999999999999999999999998865543
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=4.2e-24 Score=269.10 Aligned_cols=346 Identities=16% Similarity=0.131 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
|.....+..++..+...|++++|+..|.+++...|.+. ..+..++.+|...|++++|+..+++++...|.
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI----------EPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----------hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 45567788888888888888888888888888888775 67788888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
+..++..+|.++...|++++|+..|+++++..|.+. ..+..++..+...++++ +|+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~~~~~---~A~~~ 657 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA-------------------LALLLLADAYAVMKNYA---KAITS 657 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------------------HHHHHHHHHHHHcCCHH---HHHHH
Confidence 888888888888888888888888888888877642 23444555555566665 55666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
|.+++...|.+..++..++.++...|++++|+.+++.+....|.... .+..+|.++...|+++
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL-----------------GFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH-----------------HHHHHHHHHHHCCCHH
Confidence 66666666666666666666666666666666666666655554322 3445566666666666
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHH---------H-----HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSM---------S-----LAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~---------~-----l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
+|+..|++++...|...... .+..... . +.........+..+|.++...|++++|+.+|++++..
T Consensus 721 ~A~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 721 AAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 66666666666555441100 0000000 0 0000112345667888888888888888888888888
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
. |.++.++.++|.++...|+ .+|+.++++++.+.|+++..+..+|.++..+|++++|+.+|++++++.
T Consensus 800 ~----p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~------- 867 (899)
T TIGR02917 800 A----PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA------- 867 (899)
T ss_pred C----CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------
Confidence 7 6677888888888888888 788888888888888888888888888888888888888888888884
Q ss_pred HhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 831 AKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 831 ~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
|.+..++..+..++...+..+.
T Consensus 868 ------~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 868 ------PEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred ------CCChHHHHHHHHHHHHcCCHHH
Confidence 4444455566666555444433
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=2.9e-22 Score=249.30 Aligned_cols=354 Identities=12% Similarity=0.021 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+.++..+|..+...|++++|+.+|+++|+++|.+. .++..+|.++...|++++|+..++++++.+|+
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~----------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~ 115 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND----------DYQRGLILTLADAGQYDEALVKAKQLVSGAPD 115 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 44567799999999999999999999999999999997 88999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH----------HHHHHHh---------HHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD----------GLQKAQK---------VTEYINC 585 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~----------~l~~~~~---------~~~~l~~ 585 (954)
++. ++.+|.++...|++++|+..|++++++.|++......+..+.. .+..+.. .......
T Consensus 116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~ 194 (765)
T PRK10049 116 KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAEL 194 (765)
T ss_pred CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999987544333222221 1110000 0011111
Q ss_pred HHHHHH-----hcChHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhh
Q 002199 586 SGKLLE-----QKTSEAASSALERINEALSISSCSEK-------LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASV 653 (954)
Q Consensus 586 a~~ll~-----~g~~~~a~eAL~~l~kaL~~~P~~~~-------~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~ 653 (954)
+...+. .+++..+.+|+..++.++...|.++. ++..+..+++..|++++|+..|+++++..+....
T Consensus 195 ~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-- 272 (765)
T PRK10049 195 VRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-- 272 (765)
T ss_pred HHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH--
Confidence 111111 12233334677777777754332221 2222123345668888888888887776532111
Q ss_pred hhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcch----hhH---------HHHHHHHHHHHH--
Q 002199 654 LADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRY----GSE---------ILESSMSLAGTV-- 718 (954)
Q Consensus 654 ~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~----~~~---------~l~~~~~l~~~~-- 718 (954)
. +...+|.+|+.+|++++|+.+|++++...|..... ... ............
T Consensus 273 ----------~----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 273 ----------W----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred ----------H----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 0 12235777888888888888888877766654211 000 001111111111
Q ss_pred ------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 719 ------------------RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 719 ------------------~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
.....+..+|.++...|++++|+..|++++... |.+..++..+|.++...|++++|+.
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~----P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA----PGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 112345668888999999999999999999988 6778899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 781 DCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 781 ~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
.+++++.++|++..+++.+|.+++.++++++|...++++++..|++...
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999999999999999999999999997776543
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=5.7e-23 Score=233.97 Aligned_cols=315 Identities=16% Similarity=0.145 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 492 VLCYSNRAATRISL--GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 492 a~~~~~lA~~y~~l--g~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..++..+|..|..+ -+..+|+..|.+.-...++..+++..+|++|+.+++|++|..+|+.+-++.|--..+...+...
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~ 396 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTT 396 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence 35566666655544 4568999999997777788889999999999999999999999999999998643333322222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER-INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~-l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
+..+++.. ++.+ .+..+..+|..|+.|..+|.||-.+++++.||..|++|++++|.
T Consensus 397 LWHLq~~v-----------------------~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 397 LWHLQDEV-----------------------ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHHHHhhH-----------------------HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 22222211 2222 24567789999999999999999999999999999999999996
Q ss_pred hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 649 NFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG 728 (954)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG 728 (954)
. .|+|.++|.-+....+++.|..+|++|+.++|.+.. +|+.+|
T Consensus 454 f-----------------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn--------------------AwYGlG 496 (638)
T KOG1126|consen 454 F-----------------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN--------------------AWYGLG 496 (638)
T ss_pred c-----------------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH--------------------HHHhhh
Confidence 5 258889999999999999999999999999987765 788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 729 NEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 729 ~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
.+|.++++++.|.-+|++|+.++ |.+..+.+.+|.++.++|+.++|+..|++|+.++|.++-..+.+|.+++.+++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 99999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHH
Q 002199 809 YTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYR 888 (954)
Q Consensus 809 ~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYr 888 (954)
|++|+..++++.++ .|+.+..+..+++.+++++....+.+. |--++.++|......|+.+..
T Consensus 573 ~~eal~~LEeLk~~-------------vP~es~v~~llgki~k~~~~~~~Al~~-----f~~A~~ldpkg~~i~~k~~~~ 634 (638)
T KOG1126|consen 573 YVEALQELEELKEL-------------VPQESSVFALLGKIYKRLGNTDLALLH-----FSWALDLDPKGAQIQIKAAIE 634 (638)
T ss_pred hHHHHHHHHHHHHh-------------CcchHHHHHHHHHHHHHHccchHHHHh-----hHHHhcCCCccchhhHHHHhh
Confidence 99999999999999 556666678889998888766555432 555667777776655554443
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.9e-21 Score=223.63 Aligned_cols=303 Identities=12% Similarity=-0.010 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF- 525 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~- 525 (954)
.....+.+|..++..|++++|+..|.++++.+|.+. .++..+|.++...|++++|+..+++++...+..
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----------ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----------HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH
Confidence 455677889999999999999999999999999886 899999999999999999999999998864322
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 526 ---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 526 ---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
..++..+|.+|...|++++|+..|+++++..|.. ...+..++..+...|+++ +|+
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~-------------------~~~~~~la~~~~~~g~~~---~A~ 161 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA-------------------EGALQQLLEIYQQEKDWQ---KAI 161 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-------------------HHHHHHHHHHHHHhchHH---HHH
Confidence 3578899999999999999999999999876643 334566777888889998 778
Q ss_pred HHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 603 ERINEALSISSCSE-----KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 603 ~~l~kaL~~~P~~~-----~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
..+.+++...|... .++..+|.++...|++++|+..|+++++..|.... +++.+|.+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~ 224 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR-----------------ASILLGDLA 224 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH-----------------HHHHHHHHH
Confidence 88888888777642 35677899999999999999999999998876533 577899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...|++++|+..|++++...|... ...+..++.+|...|++++|+..+++++...| .
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~-------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p----~ 281 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYL-------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYP----G 281 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhH-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C
Confidence 999999999999999988765331 12345678899999999999999999999874 3
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEM--IRDYTQAASDLQRLVSI 822 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~--lg~~eeAi~~~ekAL~l 822 (954)
.. .+..++.++...|++++|+..++++++..|++......++..+.. .|+..+|+..+++.++.
T Consensus 282 ~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 282 AD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred ch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 33 347899999999999999999999999999987655444433322 45889999988888763
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.2e-20 Score=232.58 Aligned_cols=322 Identities=11% Similarity=0.012 Sum_probs=248.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAA 533 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA 533 (954)
.-.++.-.|++++|+..|.+++...|... .++..+|.++..+|++++|+..|+++++++|.++.++..+|
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a----------~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPA----------RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34456788999999999999999888875 78999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCC
Q 002199 534 KCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISS 613 (954)
Q Consensus 534 ~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P 613 (954)
.++...|++++|+..++++++..|++ .. ++.++..+...++++ +|+..+++++.+.|
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~-------------------~~-~~~la~~l~~~g~~~---~Al~~l~~al~~~P 147 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDK-------------------AN-LLALAYVYKRAGRHW---DELRAMTQALPRAP 147 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-------------------HH-HHHHHHHHHHCCCHH---HHHHHHHHHHHhCC
Confidence 99999999999999999999999976 44 677788888999998 89999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhh----------hhc-------------c-------Ccc---
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASV----------LAD-------------N-------GSV--- 660 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~----------~~~-------------~-------~~~--- 660 (954)
.++.++..+|.++...+..++|+..+++++. .|...... ... . ..+
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999987776 43320000 000 0 000
Q ss_pred ---hh-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002199 661 ---TY-SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR 736 (954)
Q Consensus 661 ---~~-~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~ 736 (954)
.. ......++..+..+++..|++++|+..|++++...+..+.. ....+|.+|+..|+
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-------------------a~~~la~~yl~~g~ 287 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-------------------AQRWVASAYLKLHQ 287 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-------------------HHHHHHHHHHhcCC
Confidence 00 00000011111122345566777777777766654322220 11225889999999
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN---------------YTKAVSRRAA 801 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---------------~~~al~~lA~ 801 (954)
+++|+.+|++++..+|...+.....+..++.++...|++++|+..+++++...|. ...+++.+|.
T Consensus 288 ~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~ 367 (765)
T PRK10049 288 PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQ 367 (765)
T ss_pred cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHH
Confidence 9999999999998775432223456777788889999999999999999988762 2467888999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 802 LHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 802 ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
++...|++++|+..|++++...|.+..
T Consensus 368 ~l~~~g~~~eA~~~l~~al~~~P~n~~ 394 (765)
T PRK10049 368 VAKYSNDLPQAEMRARELAYNAPGNQG 394 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999665543
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.7e-22 Score=226.54 Aligned_cols=310 Identities=14% Similarity=0.141 Sum_probs=268.5
Q ss_pred HHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 446 ETCEMWRLRGNQAY--KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 446 ~~ae~l~~~G~~~~--~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
...+.++.+|..|. .+-+..+|+.+|.+.-...++.. +++.++|.+|+.+++|++|...|+.+-.+.|
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~----------wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p 384 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG----------WVLSQLGRAYFELIEYDQAERIFSLVRRIEP 384 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555555554 55667899999999656666665 9999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
-..+..-....++..+.+--+--..-+..+..+|.. .+.|...+..+-.+++++ .||.
T Consensus 385 ~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-------------------PesWca~GNcfSLQkdh~---~Aik 442 (638)
T KOG1126|consen 385 YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-------------------PESWCALGNCFSLQKDHD---TAIK 442 (638)
T ss_pred ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-------------------cHHHHHhcchhhhhhHHH---HHHH
Confidence 766555555556666655444444445566666643 567888999999999999 8999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.|++|+.++|....+|..+|.-+....+++.|...|+.+|..+|.++. +||.+|.+|++++++
T Consensus 443 ~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn-----------------AwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 443 CFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN-----------------AWYGLGTVYLKQEKL 505 (638)
T ss_pred HHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH-----------------HHHhhhhheeccchh
Confidence 999999999999999999999999999999999999999999999876 899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
+.|.-+|++|+.++|.+.. .+..+|.++.+.|+.++|+.+|++|+.++ |.++.+.+
T Consensus 506 e~Ae~~fqkA~~INP~nsv--------------------i~~~~g~~~~~~k~~d~AL~~~~~A~~ld----~kn~l~~~ 561 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSV--------------------ILCHIGRIQHQLKRKDKALQLYEKAIHLD----PKNPLCKY 561 (638)
T ss_pred hHHHHHHHhhhcCCccchh--------------------HHhhhhHHHHHhhhhhHHHHHHHHHHhcC----CCCchhHH
Confidence 9999999999999997743 44558999999999999999999999999 88889999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.+|.++..++++++|+..+++.-++-|+...+++.+|.+|.++|+.+.|+..|--|+.++|...+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999886543
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.2e-20 Score=221.52 Aligned_cols=359 Identities=14% Similarity=0.103 Sum_probs=291.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....|..+-.+.-+|.+.|..++|..|+.+|.++|.++|... +.....+|.|++++++.+.|+..+++|++
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~---------aD~rIgig~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK---------ADVRIGIGHCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC---------CCccchhhhHHHhccchhhHHHHHHHHHh
Confidence 344577888999999999999999999999999999999876 37788899999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhchhhhhhHHHHHHHHH------------------HHHHHHhH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGE---IENAQHYYHKLLNSAAAVCLDRRITIEAAD------------------GLQKAQKV 579 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~---~eeAl~~yekaL~l~P~~~~~~~~~~ea~~------------------~l~~~~~~ 579 (954)
++|.++.++..||.+-+...+ +..|+..+.++...+|.++.....+....- ........
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999988877654 678999999999999887654422211111 11122346
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCS-EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~-~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
..++..|+.+..+|+++ +|..+|.+++..+|++ ...++.+|+.++..|+++.|+..|++++...|++..
T Consensus 308 es~Y~~gRs~Ha~Gd~e---kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e------- 377 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFE---KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE------- 377 (1018)
T ss_pred HHHHHHHHHHHhhccHH---HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH-------
Confidence 67899999999999999 8999999999999988 778889999999999999999999999999999876
Q ss_pred cchhhHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCcchhhHHHHHHH--------HHHHHH--------
Q 002199 659 SVTYSLARLWRWRLISKSYFCIG----KLEVALDLLQKLEQVGSISDRYGSEILESSM--------SLAGTV-------- 718 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG----~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~--------~l~~~~-------- 718 (954)
....||.+|...+ ..+.|..++.+++...|.+...+..+...+. ..+...
T Consensus 378 ----------tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 378 ----------TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKG 447 (1018)
T ss_pred ----------HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcC
Confidence 5567788887775 5788888999988888777665432111110 000000
Q ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----ccCC-chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002199 719 --RALLHHKSAGNEAFKSGRYTEAVEHYTVALST-----NIES-RPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790 (954)
Q Consensus 719 --~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l-----~~~~-~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP 790 (954)
-....++++|..++..|++.+|...|..|+.. +++. ........||+|.++..+++++.|...|..++..+|
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 11356778999999999999999999999987 1111 123455789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 791 NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 791 ~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.++.+++.+|.+....++..+|...+..++.++..+++
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 99999999998888999999999999999999655444
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1.7e-20 Score=234.44 Aligned_cols=310 Identities=12% Similarity=-0.012 Sum_probs=253.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc-------------------
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL------------------- 505 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l------------------- 505 (954)
|...+.+.+.+....++|++.+|...|.+++... .+.. .-..+...++.+|...
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~------~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ-GDAR------LSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC-cccc------cCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 4456778888999999999999999999999873 3220 0012233555555544
Q ss_pred ------CCHH---HHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHH
Q 002199 506 ------GRMR---EALEDCMMAATVDPN--FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ 574 (954)
Q Consensus 506 ------g~~e---eAl~~~~kALel~P~--~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~ 574 (954)
|++. .+...+.+++..+|. ++.+|+.+|.|+.. +++.+|+..|.+++...|+.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~--------------- 509 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA--------------- 509 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---------------
Confidence 3332 344555666667788 99999999999998 89999999999999998863
Q ss_pred HHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 575 KAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 575 ~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
...+..+..+...|+++ +|+..|++++...|.. ..+..+|.++...|++++|+.+|+++++..|....
T Consensus 510 -----~~~L~lA~al~~~Gr~e---eAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~--- 577 (987)
T PRK09782 510 -----WQHRAVAYQAYQVEDYA---TALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA--- 577 (987)
T ss_pred -----HHHHHHHHHHHHCCCHH---HHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH---
Confidence 12555667777889999 7788888887776664 45678899999999999999999999999876532
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
.+..++..+...|++++|+..|+++++++|. .. .+.++|.++.+.
T Consensus 578 --------------l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~--------------------a~~~LA~~l~~l 622 (987)
T PRK09782 578 --------------LYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN--------------------AYVARATIYRQR 622 (987)
T ss_pred --------------HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH--------------------HHHHHHHHHHHC
Confidence 2334555666779999999999999999984 22 466789999999
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
|++++|+.+|++++.++ |.++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+.
T Consensus 623 G~~deA~~~l~~AL~l~----Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 623 HNVPAAVSDLRAALELE----PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999 78889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHH
Q 002199 815 DLQRLVSILENQSA 828 (954)
Q Consensus 815 ~~ekAL~l~p~~~~ 828 (954)
+|++++++.|+...
T Consensus 699 ~l~~Al~l~P~~a~ 712 (987)
T PRK09782 699 YARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHHhcCCCCch
Confidence 99999999776543
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.6e-20 Score=212.21 Aligned_cols=281 Identities=15% Similarity=0.112 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
...+.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. .
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~----------- 103 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT-R----------- 103 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC-H-----------
Confidence 4567779999999999999999999999999999999999999999999999999999998743211 0
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
......+..++..+...|+++ +|+..|.+++...|....++..++.++...|++++|+..++++++..|.+...
T Consensus 104 ---~~~~~~~~~La~~~~~~g~~~---~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (389)
T PRK11788 104 ---EQRLLALQELGQDYLKAGLLD---RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV 177 (389)
T ss_pred ---HHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH
Confidence 011234677788899999999 78889999999999999999999999999999999999999999887654210
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
.....+..+|.++...|++++|+.+|+++++..|.... .+..+|.++.
T Consensus 178 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------------~~~~la~~~~ 225 (389)
T PRK11788 178 ------------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR--------------------ASILLGDLAL 225 (389)
T ss_pred ------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH--------------------HHHHHHHHHH
Confidence 11124567899999999999999999999998775422 4556899999
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
..|++++|+.+|++++..+| .....++..++.+|...|++++|+..+++++.+.|+... +..++.++...|++++|
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDP---EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAA 301 (389)
T ss_pred HCCCHHHHHHHHHHHHHHCh---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHH
Confidence 99999999999999999873 233567888999999999999999999999999998754 48899999999999999
Q ss_pred HHHHHHHHHHhhhhH
Q 002199 813 ASDLQRLVSILENQS 827 (954)
Q Consensus 813 i~~~ekAL~l~p~~~ 827 (954)
+..|+++++..|+..
T Consensus 302 ~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 302 QALLREQLRRHPSLR 316 (389)
T ss_pred HHHHHHHHHhCcCHH
Confidence 999999999976654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.6e-20 Score=234.68 Aligned_cols=290 Identities=11% Similarity=0.036 Sum_probs=254.0
Q ss_pred cCCHHHHH---HHHHHHHHhCCC--CcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 461 NNNLTEAE---DFYTQGINSVPL--SETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 461 ~g~y~eAi---~~y~kAL~~~P~--~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
.|++.+|. ..+.+++...|. +. .+|+++|.|+.. +++.+|+..+.+++...|+.. .++.+|.+
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~----------~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~a 518 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDA----------AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQ 518 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCH----------HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHH
Confidence 34454434 444455555555 54 899999999998 899999999999999999864 47777888
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
+...|++++|+..|++++...|.. ..++..+..++..|+++ +|+..+++++...|..
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~--------------------~a~~~la~all~~Gd~~---eA~~~l~qAL~l~P~~ 575 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSN--------------------EDLLAAANTAQAAGNGA---ARDRWLQQAEQRGLGD 575 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCc--------------------HHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCcc
Confidence 899999999999999988775542 23566778888999998 7889999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
..++..++..+..+|++++|+..|++++++.|. .. .+..+|.++..+|++++|+..|++++.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~-----------------a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN-----------------AYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888889999999999999999995 33 678899999999999999999999999
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCH
Q 002199 696 VGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQI 775 (954)
Q Consensus 696 l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ 775 (954)
++|++.. .+.++|.++...|++++|+.+|++++.++ |.++.+++++|.++..+|++
T Consensus 638 l~Pd~~~--------------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 638 LEPNNSN--------------------YQAALGYALWDSGDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred hCCCCHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCH
Confidence 9998754 56779999999999999999999999999 78899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 776 ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 776 eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++|+.+|+++++++|+........|.+.....+++.|.+.|.++..+.|+-.
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999999999999999999999999999987754
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.2e-20 Score=199.23 Aligned_cols=369 Identities=16% Similarity=0.146 Sum_probs=285.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCc---------------------hHHHHHHHHHHHHHHc
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIK---------------------PLVLCYSNRAATRISL 505 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~---------------------~la~~~~~lA~~y~~l 505 (954)
+.-.++..|.++-+.|....|+..|..++...|-+.. .|.. .....-+.++.++..+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~--AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWS--AWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchH--HHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3557899999999999999999999999998887652 1110 0011112355667777
Q ss_pred CCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002199 506 GRMREALEDCMMAATV-DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYIN 584 (954)
Q Consensus 506 g~~eeAl~~~~kALel-~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~ 584 (954)
.+.++++..++..+.. -|.....-...|.++..+.++++|+..|+.+++.+|-...+...
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdl------------------- 301 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDL------------------- 301 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHH-------------------
Confidence 7889999999999988 79998899999999999999999999999999998853222111
Q ss_pred HHHHHHHhcChHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 585 CSGKLLEQKTSEAASSALER-INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 585 ~a~~ll~~g~~~~a~eAL~~-l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
....++-..+- ..+.+ .+.+..++...++.-..+|..|...++.+.|+.+|+++|+++|....
T Consensus 302 ySN~LYv~~~~----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~------------ 365 (559)
T KOG1155|consen 302 YSNVLYVKNDK----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS------------ 365 (559)
T ss_pred HhHHHHHHhhh----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH------------
Confidence 11112211111 11222 23455667677777888899999999999999999999999998754
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 664 LARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~ 743 (954)
+|.++|.-|..+.+...|+..|++|+.++|.+.. +|+.+|+.|--++...=|+-+
T Consensus 366 -----aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR--------------------AWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 366 -----AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR--------------------AWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred -----HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH--------------------HHhhhhHHHHHhcchHHHHHH
Confidence 8999999999999999999999999999987654 789999999999999999999
Q ss_pred HHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 744 y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
|++|+.+- |.+..+|..||.||.++++.++||.+|.+|+.....+..++..+|.+|..++++++|..+|++.++..
T Consensus 421 fqkA~~~k----PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 421 FQKALELK----PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHhcC----CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999998 88999999999999999999999999999999998899999999999999999999999999999964
Q ss_pred hhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHHHHHHhh
Q 002199 824 ENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKH 894 (954)
Q Consensus 824 p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~ 894 (954)
.... .+......+...|.......+.-....+|..+.+.-+....|-|...|.....-
T Consensus 497 ~~eg-------------~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 497 ELEG-------------EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQ 554 (559)
T ss_pred Hhhc-------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 1110 011233444444544444444444556677776666555556666666655433
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2e-20 Score=205.37 Aligned_cols=293 Identities=15% Similarity=0.118 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
+..+-++|.-++..|+|++||++|..||++.|+.+-.|.+++-||..+|++++-++...++|+++|+..........+.+
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 46777889999999999999999999999999999999999999999999999999999999999987654433333333
Q ss_pred HHHHHHh----------------------HHHHHH---------------------------------------------
Q 002199 572 GLQKAQK----------------------VTEYIN--------------------------------------------- 584 (954)
Q Consensus 572 ~l~~~~~----------------------~~~~l~--------------------------------------------- 584 (954)
.+.+... ++..+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 3332221 000000
Q ss_pred -------HHHHHHHhcChHHHHHHHHHHHHHHhcC---C-CC---------HHHHHHHHHHHHHccCHHHHHHHHHHhch
Q 002199 585 -------CSGKLLEQKTSEAASSALERINEALSIS---S-CS---------EKLLEMKADALYMLRKYEEAIQLCEHTLP 644 (954)
Q Consensus 585 -------~a~~ll~~g~~~~a~eAL~~l~kaL~~~---P-~~---------~~~~~~lA~~~~~lg~~eeAi~~~ekaL~ 644 (954)
.+...+..+..+....|.+.+.+..... + .+ ..++.+.|..++..|++-.|.+.++.+|.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0111111111111112333332222111 1 12 56788889999999999999999999999
Q ss_pred hhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 002199 645 VAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHH 724 (954)
Q Consensus 645 l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~ 724 (954)
+.|.... .|..+|.+|....+.++-...|.++..++|.++. .|
T Consensus 355 l~~~~~~-----------------lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--------------------vY 397 (606)
T KOG0547|consen 355 LDPAFNS-----------------LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--------------------VY 397 (606)
T ss_pred cCcccch-----------------HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--------------------hh
Confidence 9997643 3778999999999999999999999999999987 67
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
+.+|++++-.++|++|+.-|++++.++ |.++..|..++.+.+++++++++...|+.++..-|+.++.+...|.++.
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~----pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLD----PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 789999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhh
Q 002199 805 MIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 805 ~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.++++++|++.|.++++|.|.
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccc
Confidence 999999999999999999887
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.6e-19 Score=212.17 Aligned_cols=321 Identities=16% Similarity=0.156 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCH
Q 002199 464 LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-LKVYMRAAKCHLVLGEI 542 (954)
Q Consensus 464 y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-~~a~~~LA~iy~~lG~~ 542 (954)
++.|...|.-.++..|++. .+++.+|.+.+..++|..|+.+|+++|.++|.. +...+.+|.|+..+|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni----------l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~ 215 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI----------LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMS 215 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch----------HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccch
Confidence 5899999999999999986 899999999999999999999999999999975 56778899999999999
Q ss_pred HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002199 543 ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMK 622 (954)
Q Consensus 543 eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~l 622 (954)
+.|+..|+++++++|.+ +..+..++...+...+.+....++..+.++..++|.+|.++..|
T Consensus 216 ~~a~~a~~ralqLdp~~-------------------v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~L 276 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTC-------------------VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHL 276 (1018)
T ss_pred hhHHHHHHHHHhcChhh-------------------HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 99999999999999965 45566666666666666666689999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
|.-++..|+|+.+..++..++........ ....+|.+|.+|..+|+|++|..+|.++++.++++..
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~--------------~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSI--------------KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHH--------------HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence 99999999999999999999887632211 1226889999999999999999999999999887722
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc----CHHHH
Q 002199 703 YGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG----QIADA 778 (954)
Q Consensus 703 ~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg----~~eeA 778 (954)
..+..+|+.|+..|+++.|+.+|++.+... |.+......||.+|...+ ..+.|
T Consensus 343 -------------------l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 343 -------------------LPLVGLGQMYIKRGDLEESKFCFEKVLKQL----PNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred -------------------ccccchhHHHHHhchHHHHHHHHHHHHHhC----cchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 356779999999999999999999999999 888999999999998886 78899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 779 IADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 779 i~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
..+..++++..|.+.++|+.+|.+|....-+.. +..|..|+.++.... .+--+...+.++..+..++.++.
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~--------~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG--------KQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC--------CCCCHHHHHhHHHHHHHhcChHH
Confidence 999999999999999999999999998766666 999999998765432 22222233555555555555544
Q ss_pred h
Q 002199 859 D 859 (954)
Q Consensus 859 a 859 (954)
+
T Consensus 471 A 471 (1018)
T KOG2002|consen 471 A 471 (1018)
T ss_pred H
Confidence 3
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=2.8e-19 Score=209.11 Aligned_cols=327 Identities=17% Similarity=0.177 Sum_probs=265.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
.....+...|+.++..|++++|+.++.++|+.+|.+. .+|+.+|.+|..+|+.++|+...-.|-.++|.+
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~----------~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d 206 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP----------IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD 206 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch----------hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 3467788899999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
...|..++....++|.+.+|+-+|.+|++.+|.+ +.-.+.++..+.+.|++. .|+..+
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-------------------~~~~~ers~L~~~~G~~~---~Am~~f 264 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQANPSN-------------------WELIYERSSLYQKTGDLK---RAMETF 264 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-------------------hHHHHHHHHHHHHhChHH---HHHHHH
Confidence 9999999999999999999999999999999986 455677788888888888 789999
Q ss_pred HHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 606 NEALSISSCS-----EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 606 ~kaL~~~P~~-----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
.+++...|.. .......+..+...++-+.|++.++.++........ .--+..++.+++..
T Consensus 265 ~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~---------------~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 265 LQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS---------------LEDLNILAELFLKN 329 (895)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc---------------ccHHHHHHHHHHHh
Confidence 9999999832 223344477888888889999999998883322111 01345678888888
Q ss_pred CCHHHHHHHHHHHHhhC--CCC----------------------cchhhHH---------------HHHHHHH---HH--
Q 002199 681 GKLEVALDLLQKLEQVG--SIS----------------------DRYGSEI---------------LESSMSL---AG-- 716 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~--p~~----------------------~~~~~~~---------------l~~~~~l---~~-- 716 (954)
.+++.|+.....-.... +++ ......+ ++.+... ..
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 99999988877655410 000 0000011 0111000 01
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
.......+..++.+|...|+|.+|+.+|..++...+ -.++.+|+.+|.||..+|.+++|+.+|+++|.+.|++.++.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~---~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG---YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc---ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 224456788899999999999999999999987753 34588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 797 SRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 797 ~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
..|+.+|..+|+.++|++.+++...-
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 99999999999999999999987733
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=5.1e-19 Score=191.35 Aligned_cols=337 Identities=19% Similarity=0.176 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
...-...|++++++.+|.+|+.+|+.||...|.-. ....+.++.++|..+.+.|+|+.||..|+.+++..|+...
T Consensus 237 g~lkmnigni~~kkr~fskaikfyrmaldqvpsin-----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a 311 (840)
T KOG2003|consen 237 GILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA 311 (840)
T ss_pred ceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh
Confidence 33446789999999999999999999999999864 4556899999999999999999999999999999998864
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhch--h--------hhhhHHHHHHH-----HHHHHHHHh--------------
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAA--A--------VCLDRRITIEA-----ADGLQKAQK-------------- 578 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P--~--------~~~~~~~~~ea-----~~~l~~~~~-------------- 578 (954)
-++|-.|++..|+-++-.+.|.+.+.+-- + +-.+...+.++ +..+++-..
T Consensus 312 -~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii 390 (840)
T KOG2003|consen 312 -ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII 390 (840)
T ss_pred -hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 45778999999999999999999987521 0 00011111111 111111000
Q ss_pred ----------------------------HHHHHHHHHHHHHhcChHHHHHHH----------------------------
Q 002199 579 ----------------------------VTEYINCSGKLLEQKTSEAASSAL---------------------------- 602 (954)
Q Consensus 579 ----------------------------~~~~l~~a~~ll~~g~~~~a~eAL---------------------------- 602 (954)
...-++.+..++.+|+++.|.+.+
T Consensus 391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 122344566777888887665333
Q ss_pred ------HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 603 ------ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 603 ------~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
.+...++.++..++.++.+.|.+.+..|++++|.+.|+++|.-+....+ +++++|..
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-----------------alfniglt 533 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-----------------ALFNIGLT 533 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-----------------HHHHhccc
Confidence 3334445555556666666677777777777777777777766554433 66778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
+-.+|++++|+.+|-++..+ ....+..+..++++|....+..+||++|.++..+- |
T Consensus 534 ~e~~~~ldeald~f~klh~i--------------------l~nn~evl~qianiye~led~aqaie~~~q~~sli----p 589 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI--------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI----P 589 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH--------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC----C
Confidence 88888888888888766433 22345667788999999999999999999999888 7
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHH
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKA 831 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~ 831 (954)
.++.++..||.+|-+.|+-.+|.+++-.....-|.+.+..-+||..|+...=+++|+.+|+++--+-|+...|++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 888999999999999999999999999989999999999999999999999999999999999999888888764
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.6e-18 Score=186.86 Aligned_cols=299 Identities=14% Similarity=0.072 Sum_probs=247.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINS-VPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA 532 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~-~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L 532 (954)
++.++-...+.++|+.-+...+.. -|... .+-...|.+...+.++++|+..|+..+..+|-...-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~----------~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdly 302 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSM----------YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccH----------HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 344555555899999999999988 67765 6778899999999999999999999999999665555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC
Q 002199 533 AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612 (954)
Q Consensus 533 A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~ 612 (954)
..+++-..+-.+-.-.-+.+..++.- +.+.+--.|.-|...++.+ +|+.+|+++++++
T Consensus 303 SN~LYv~~~~skLs~LA~~v~~idKy-------------------R~ETCCiIaNYYSlr~eHE---KAv~YFkRALkLN 360 (559)
T KOG1155|consen 303 SNVLYVKNDKSKLSYLAQNVSNIDKY-------------------RPETCCIIANYYSLRSEHE---KAVMYFKRALKLN 360 (559)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHhccC-------------------CccceeeehhHHHHHHhHH---HHHHHHHHHHhcC
Confidence 55555554433322222333333210 1222333344444555555 8999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 613 SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK 692 (954)
Q Consensus 613 P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~k 692 (954)
|....+|..+|.-|+.+.+...|++.|++|++++|.++. +|+.||++|--++-+.-|+-+|++
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR-----------------AWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR-----------------AWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH-----------------HHhhhhHHHHHhcchHHHHHHHHH
Confidence 999999999999999999999999999999999999876 899999999999999999999999
Q ss_pred HHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh
Q 002199 693 LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL 772 (954)
Q Consensus 693 al~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l 772 (954)
|+.+.|.+.. .|..+|++|.+.++.++||.+|.+|+... .....++..||.+|..+
T Consensus 424 A~~~kPnDsR--------------------lw~aLG~CY~kl~~~~eAiKCykrai~~~----dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 424 ALELKPNDSR--------------------LWVALGECYEKLNRLEEAIKCYKRAILLG----DTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHhcCCCchH--------------------HHHHHHHHHHHhccHHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHH
Confidence 9999998865 56779999999999999999999999987 56788999999999999
Q ss_pred cCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 773 GQIADAIADCSLAMA-------LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 773 g~~eeAi~~~ekAL~-------ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+++.+|..+|++.++ ++|+...+...||.-+.+.+++++|-.+..+++.-.+.
T Consensus 480 ~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 999999999999998 56778899999999999999999999999888877433
No 30
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.3e-18 Score=190.64 Aligned_cols=280 Identities=12% Similarity=0.144 Sum_probs=226.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
..+..+.+..++..++..++|.+-.++.+..++.+|-+. .++-..-.|+..+|+..+=...-.+.+...|
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~----------~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP 309 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL----------PCLPLHIACLYELGKSNKLFLLSHKLVDLYP 309 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc----------chHHHHHHHHHHhcccchHHHHHHHHHHhCC
Confidence 345566777777777777788887777777777777765 4444333377777777777677777777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
+.+-.|+..|.-|+..|++.+|+.+|.++..+
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~l------------------------------------------------ 341 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTL------------------------------------------------ 341 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc------------------------------------------------
Confidence 77777777777777777777777777776554
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
+|....+|...|..+...++.++|+..|..|-++.|.... ..+.+|.-|.+.+.+
T Consensus 342 --------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-----------------P~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 342 --------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-----------------PSLYLGMEYMRTNNL 396 (611)
T ss_pred --------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-----------------hHHHHHHHHHHhccH
Confidence 4556678888899999999999999999999999887654 456789999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC---chhhHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES---RPFAAI 760 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~---~p~~a~ 760 (954)
+.|..+|..|+.+.|.++- .+..+|.+.+..+.|.+|+.+|+.++..-+.. .+....
T Consensus 397 kLAe~Ff~~A~ai~P~Dpl--------------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPL--------------------VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred HHHHHHHHHHHhcCCCcch--------------------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 9999999999999998865 45568999999999999999999998542211 124556
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+.|||.++.+++++++||.+|+++|.+.|.++.++..+|.+|..+|+++.|+.+|.++|-+.|++
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999995444
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=2.6e-16 Score=193.55 Aligned_cols=355 Identities=9% Similarity=-0.063 Sum_probs=203.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|..+...+..+.+.+++|+|..|+..|+++++.+|.+. .....++.++...|++++|+..+++++
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~----------~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS----------GQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch----------hhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 3344566778999999999999999999999999999999984 233388888889999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
.-.|.....+..+|.+|..+|++++|++.|+++++.+|++... ++.++..+...++.+
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~-------------------l~gLa~~y~~~~q~~--- 153 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDL-------------------ISGMIMTQADAGRGG--- 153 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------------------HHHHHHHHhhcCCHH---
Confidence 4444445555555889999999999999999999999987322 223334444444444
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc-------------------
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV------------------- 660 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~------------------- 660 (954)
+|+..+.+++..+|..... ..++.++..++++.+|+..|+++++..|.+...........
T Consensus 154 eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 154 VVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc
Confidence 4555555555555553332 33344444444554455555555555555433211100000
Q ss_pred hhhHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCcchh----hHHHHHHHHHHH------HH
Q 002199 661 TYSLARLWRWRLISKSYFCIG------------KLEVALDLLQKLEQVGSISDRYG----SEILESSMSLAG------TV 718 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG------------~~eeAl~~l~kal~l~p~~~~~~----~~~l~~~~~l~~------~~ 718 (954)
-......|.....+.-..+.. -.+.|+..++..+...+..+... ...+..+..+.. .+
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 000000010001111111111 23445556666665443333211 011111111110 00
Q ss_pred HHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC--chhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 719 RAL------------LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES--RPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 719 ~~~------------~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~--~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
... -+....|..|+..++.++|+.+|..++.-.+.. .+........|-.+|+..++|++|..++++
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 000 112234667777777777777777776644321 122233334555666777777777777777
Q ss_pred HHHhC---------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 785 AMALD---------------ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 785 AL~ld---------------P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
..... |+...+...++.++...|++.+|.+.+++.+...|.+.
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 66532 33456666667777777777777777777777644443
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.1e-16 Score=196.97 Aligned_cols=340 Identities=13% Similarity=0.008 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
...+..+|..+..+|+|++|+++|+++++.+|+++ .++..++.+|...+++++|++.+++++..+|.+..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~----------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP----------DLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 34455557788888999999999999999999987 77788889999999999999999999999998655
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK-----------------VTEYINCSGKLL 590 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~-----------------~~~~l~~a~~ll 590 (954)
. ..++.++..++++.+|++.|+++++++|++.........++..+.-... .......+...+
T Consensus 172 ~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 172 Y-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred H-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence 4 5566666667888779999999999998765433222222221111100 000111122222
Q ss_pred ---------HhcChHHHHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 591 ---------EQKTSEAASSALERINEALSI---SSCS----EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 591 ---------~~g~~~~a~eAL~~l~kaL~~---~P~~----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
....+..+..|+..++..+.. .|.. ..+..-+-.++...+++.+++..|+.+......-+
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P---- 326 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP---- 326 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC----
Confidence 123455666889989888873 3432 22344455678889999999999998764432111
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
. |+....|..|+.++++++|+.+|+.++.-.+..... ...+.....+...|+..
T Consensus 327 --------~----y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~--------------~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 327 --------D----YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN--------------SDDLLDADDLYYSLNES 380 (822)
T ss_pred --------H----HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC--------------CcchHHHHHHHHHHHhc
Confidence 1 244567999999999999999999998866422110 00112233467889999
Q ss_pred CCHHHHHHHHHHHHhhcc-----------CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 735 GRYTEAVEHYTVALSTNI-----------ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~-----------~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
++|++|..++++.....| ...|+...+...++.++...|++.+|++.+++.+...|.+...+..+|.++
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999988554 123667788899999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 804 EMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
...|.+.+|...++.++.+.|++..
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHH
Confidence 9999999999999999999665543
No 33
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.80 E-value=9.7e-17 Score=169.53 Aligned_cols=303 Identities=14% Similarity=0.077 Sum_probs=248.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|....+++.+|..|+..|+-.-|+.-+.++|++.|+.. .+...+|.+++++|++++|..+|.++|
T Consensus 64 Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~----------~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 64 AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM----------AARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH----------HHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred hcCCCc---HHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002199 520 TVDPNF---LKVYMR------------AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYIN 584 (954)
Q Consensus 520 el~P~~---~~a~~~------------LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~ 584 (954)
.-+|.+ ..++-. ....+...|++..|++....+|++.|-+ +..+..
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-------------------a~l~~~ 194 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-------------------ASLRQA 194 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-------------------hHHHHH
Confidence 999954 333333 3344556789999999999999998843 344566
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhH
Q 002199 585 CSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSL 664 (954)
Q Consensus 585 ~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~ 664 (954)
++..|+..++.. .||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+|+++|+.-.-... ...+
T Consensus 195 Rakc~i~~~e~k---~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~-----YKkl 266 (504)
T KOG0624|consen 195 RAKCYIAEGEPK---KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF-----YKKL 266 (504)
T ss_pred HHHHHHhcCcHH---HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH-----HHHH
Confidence 788889999888 88999999999999999999999999999999999999999999999976321100 0001
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
..+.-.+.-+......++|.++++..++.++..|...... +..+..+..++...+++.+||...
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir----------------~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR----------------YNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee----------------eeeeheeeecccccCCHHHHHHHH
Confidence 1111122235556788999999999999999988744322 112333567788889999999999
Q ss_pred HHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 745 TVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 745 ~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.++|.++ |.+..+++.+|.+|+.-..|+.||..|++|+++++++..+.-.+
T Consensus 331 ~evL~~d----~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 331 KEVLDID----PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHhcC----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 9999999 88999999999999999999999999999999999987765444
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=4.7e-19 Score=195.01 Aligned_cols=261 Identities=19% Similarity=0.166 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSV--PLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~--P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~ 530 (954)
.+|..++..|++++|++++.+++... |.+. ..|..+|.+...+++++.|+..|++++..++..+..+.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~----------~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~ 82 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDP----------EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc----------cccccccccccccccccccccccccccccccccccccc
Confidence 34666666666666666665444333 4443 55556666666666666666666666666666555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHh
Q 002199 531 RAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610 (954)
Q Consensus 531 ~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~ 610 (954)
+++.+ ...+++++|+..++++.+.
T Consensus 83 ~l~~l-~~~~~~~~A~~~~~~~~~~------------------------------------------------------- 106 (280)
T PF13429_consen 83 RLIQL-LQDGDPEEALKLAEKAYER------------------------------------------------------- 106 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-ccccccccccccccccccc-------------------------------------------------------
Confidence 55555 5566666666555554432
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALD 688 (954)
Q Consensus 611 ~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~ 688 (954)
. .++..+.....++...++++++...++++.... +.+ ...|..+|.++...|++++|+.
T Consensus 107 -~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 107 -D-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-----------------ARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -------------H-HHHTT-HHHHHHHHHHHHH-T---T------------------HHHHHHHHHHHHHCCHHHHHHH
T ss_pred -c-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-----------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 2 223444555667777788888888877766433 111 1256677888888888888888
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHH
Q 002199 689 LLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAA 768 (954)
Q Consensus 689 ~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~ 768 (954)
.|++++.+.|++.. ....++.++...|+++++.+.+....... |.++.++..+|.+
T Consensus 168 ~~~~al~~~P~~~~--------------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~----~~~~~~~~~la~~ 223 (280)
T PF13429_consen 168 DYRKALELDPDDPD--------------------ARNALAWLLIDMGDYDEAREALKRLLKAA----PDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHHHH-TT-HH--------------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HTSCCHCHHHHHH
T ss_pred HHHHHHHcCCCCHH--------------------HHHHHHHHHHHCCChHHHHHHHHHHHHHC----cCHHHHHHHHHHH
Confidence 88888888887654 33446777888888888888888777776 5566678889999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 769 LQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 769 y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
|..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|...++++++.
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999998875
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=99.79 E-value=4.2e-17 Score=196.14 Aligned_cols=264 Identities=14% Similarity=0.021 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC---------CHHHHHHHHH
Q 002199 449 EMWRLRGNQAYKN---NNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG---------RMREALEDCM 516 (954)
Q Consensus 449 e~l~~~G~~~~~~---g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg---------~~eeAl~~~~ 516 (954)
..++.+|..++.. +.+++|+.+|++|++++|++. .+|..+|.+|..++ ++++|+..++
T Consensus 259 ~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a----------~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI----------APYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred HHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH----------HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 3466677655543 467899999999999999987 88999999887553 4899999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH
Q 002199 517 MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596 (954)
Q Consensus 517 kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~ 596 (954)
++++++|+++.++..+|.++..+|++++|+..|+++++++|+
T Consensus 329 ~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-------------------------------------- 370 (553)
T PRK12370 329 KATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-------------------------------------- 370 (553)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------------------------
Confidence 999999999999999999999999999999999998887665
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 597 AASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
++.+++.+|.++...|++++|+..++++++++|.+.. .++.++.+
T Consensus 371 ------------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-----------------~~~~~~~~ 415 (553)
T PRK12370 371 ------------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-----------------AGITKLWI 415 (553)
T ss_pred ------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-----------------hHHHHHHH
Confidence 3444555555555555555555555555555554322 12223334
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc
Q 002199 677 YFCIGKLEVALDLLQKLEQVG-SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR 755 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~ 755 (954)
++..|++++|+..+++++... |..+. .+..+|.++...|++++|+..+.+++...
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~--------------------~~~~la~~l~~~G~~~eA~~~~~~~~~~~---- 471 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPI--------------------LLSMQVMFLSLKGKHELARKLTKEISTQE---- 471 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHH--------------------HHHHHHHHHHhCCCHHHHHHHHHHhhhcc----
Confidence 444555555555555555443 22211 23335555555666666666655554444
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
|....++..++.+|..+|+ +|...+++.++..-....-....+.+|.-.|+-+.|... +++.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred chhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4445555555555555552 444444444433222111122255555556665555554 444433
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.78 E-value=5.3e-16 Score=179.97 Aligned_cols=310 Identities=11% Similarity=-0.023 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
..+......|...+..|+|..|.+.+.++.+..|... ..+...|.++..+|+++.|..++.++++..|+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~----------~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~ 151 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV----------LNLIKAAEAAQQRGDEARANQHLEEAAELAGND 151 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 3566678889999999999999999999999988765 677788999999999999999999999999988
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 526 L-KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 526 ~-~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
. .+...++.++...|++++|+..++++++..|.+ ...+...+..++..|+++ .|+..
T Consensus 152 ~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~-------------------~~~l~ll~~~~~~~~d~~---~a~~~ 209 (409)
T TIGR00540 152 NILVEIARTRILLAQNELHAARHGVDKLLEMAPRH-------------------KEVLKLAEEAYIRSGAWQ---ALDDI 209 (409)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHHhhHH---HHHHH
Confidence 5 566778999999999999999999999999986 344566777888999999 55555
Q ss_pred HHHHHhcCCCCHHH----HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 605 INEALSISSCSEKL----LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 605 l~kaL~~~P~~~~~----~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
+.+.++....++.. ......-++..+..++++..+..+....|..... . ...+..++..+...
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~-----------~--~~l~~~~a~~l~~~ 276 (409)
T TIGR00540 210 IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRH-----------N--IALKIALAEHLIDC 276 (409)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhC-----------C--HHHHHHHHHHHHHC
Confidence 55665543333222 2222233345555566667777777776642110 0 11567789999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH-
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA- 759 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a- 759 (954)
|++++|+..++++++..|++...... .-.....+..++...+++.++++++.. |.++
T Consensus 277 g~~~~A~~~l~~~l~~~pd~~~~~~~------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~----p~~~~ 334 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKKLGDDRAISLP------------------LCLPIPRLKPEDNEKLEKLIEKQAKNV----DDKPK 334 (409)
T ss_pred CChHHHHHHHHHHHhhCCCcccchhH------------------HHHHhhhcCCCChHHHHHHHHHHHHhC----CCChh
Confidence 99999999999999999987542100 112233344578899999999999998 6666
Q ss_pred -HHHHHHHHHHHHhcCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 760 -ICFCNRAAALQALGQIADAIADCS--LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 760 -~~~~~lA~~y~~lg~~eeAi~~~e--kAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
.++..+|.+++.+|+|++|.++|+ .+++..|+... +..+|.++.++|+.++|.++|++++.+.
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888899999999999999999999 57888897766 5599999999999999999999998773
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=8.1e-17 Score=178.56 Aligned_cols=244 Identities=17% Similarity=0.062 Sum_probs=175.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002199 462 NNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE 541 (954)
Q Consensus 462 g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~ 541 (954)
+..+.++..+.++|...|-++ ...+..|+.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.++..+|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 467888999999997554332 12358899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002199 542 IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEM 621 (954)
Q Consensus 542 ~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~ 621 (954)
+++|+..|+++++++| .+..++..
T Consensus 114 ~~~A~~~~~~Al~l~P--------------------------------------------------------~~~~a~~~ 137 (296)
T PRK11189 114 FDAAYEAFDSVLELDP--------------------------------------------------------TYNYAYLN 137 (296)
T ss_pred HHHHHHHHHHHHHhCC--------------------------------------------------------CCHHHHHH
Confidence 9999999988887655 44556777
Q ss_pred HHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 622 lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
+|.++...|++++|+..++++++++|.+.. .. .| ..++...+++++|+..|.+++...+...
T Consensus 138 lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-------------~~--~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~ 199 (296)
T PRK11189 138 RGIALYYGGRYELAQDDLLAFYQDDPNDPY-------------RA--LW---LYLAESKLDPKQAKENLKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------------HH--HH---HHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence 788888888888888888888888776521 00 11 1223456778888888876654322111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE--AVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAI 779 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee--Ai~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi 779 (954)
. ..+..++..|++.+ +++.+.+++...+...|....+|+++|.++..+|++++|+
T Consensus 200 ~-----------------------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 200 W-----------------------GWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred c-----------------------HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 1 01233334444432 3333333333222222677889999999999999999999
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Q 002199 780 ADCSLAMALDE-NYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 780 ~~~ekAL~ldP-~~~~al~~lA~ly~~lg~ 808 (954)
.+|++|++++| ++++..+.+..+....+.
T Consensus 257 ~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 257 ALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 99999999996 777777666666555443
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=1.2e-16 Score=192.13 Aligned_cols=243 Identities=13% Similarity=0.043 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 493 LCYSNRAATRISL---GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 493 ~~~~~lA~~y~~l---g~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..++.+|..++.. +.+++|+..|++|++++|+++.+|..+|.+|..++.+... .
T Consensus 259 ~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~----------~------------- 315 (553)
T PRK12370 259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIF----------D------------- 315 (553)
T ss_pred HHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc----------c-------------
Confidence 3455566555443 3568999999999999999999999999988765432100 0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
..++++ +|+..+++++.++|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 316 ---------------------~~~~~~---~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 371 (553)
T PRK12370 316 ---------------------KQNAMI---KAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS 371 (553)
T ss_pred ---------------------cchHHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 001122 67777888888999999999999999999999999999999999999988
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~ 729 (954)
.. +|+.+|.++...|++++|+..++++++++|.+.. .+..++.
T Consensus 372 ~~-----------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--------------------~~~~~~~ 414 (553)
T PRK12370 372 AD-----------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--------------------AGITKLW 414 (553)
T ss_pred HH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--------------------hHHHHHH
Confidence 55 6788999999999999999999999999998754 1122455
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH
Q 002199 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDY 809 (954)
Q Consensus 730 ~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~ 809 (954)
+++..|++++|+..+++++...+ |..+.++.++|.+|..+|++++|+..+.+++...|....++..++.+|..+|+
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~---p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 490 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHL---QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE- 490 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhcc---ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH-
Confidence 67778999999999999998753 56778899999999999999999999999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHhh
Q 002199 810 TQAASDLQRLVSILE 824 (954)
Q Consensus 810 eeAi~~~ekAL~l~p 824 (954)
+|...++++++...
T Consensus 491 -~a~~~l~~ll~~~~ 504 (553)
T PRK12370 491 -RALPTIREFLESEQ 504 (553)
T ss_pred -HHHHHHHHHHHHhh
Confidence 78888887776533
No 39
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=6e-17 Score=182.52 Aligned_cols=239 Identities=17% Similarity=0.144 Sum_probs=173.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
+..|..+++.|++.+|+-+|+.|++.+|.+. .+|..||.++...++-..||..+++|++++|++..++..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha----------eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLma 358 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA----------EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMA 358 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH----------HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHH
Confidence 5689999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI 611 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~ 611 (954)
||.+|...|.-.+|+.++.+-|...|.......... .........+ -+........+.|..+...
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~------------~~~~~~~~s~---~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE------------NEDFENTKSF---LDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc------------cccccCCcCC---CCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998774311100000 0000000000 0001111333444455555
Q ss_pred CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 612 SS--CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDL 689 (954)
Q Consensus 612 ~P--~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~ 689 (954)
.| .+++++..||.+|...|+|++|+.+|+.||...|.++. .|..||-++....+.++|+..
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~-----------------lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL-----------------LWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH-----------------HHHHhhHHhcCCcccHHHHHH
Confidence 55 56777777777777777777777777777777777644 566777777777777777777
Q ss_pred HHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002199 690 LQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 690 l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~ 752 (954)
|++|+++.|.... +.+++|..++.+|.|.+|+.+|-.||.+.+
T Consensus 487 Y~rALqLqP~yVR--------------------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 487 YNRALQLQPGYVR--------------------VRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHhcCCCeee--------------------eehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 7777777665533 455667777777777777777777766643
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=2.9e-15 Score=173.11 Aligned_cols=301 Identities=11% Similarity=0.006 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR-AATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l-A~~y~~lg~~eeAl~~~~kALel~P 523 (954)
...+......|...+..|+|++|.+...++-+..+. + .+++.+ +.+...+|+++.|...|.++.+.+|
T Consensus 81 ~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p----------~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~ 149 (398)
T PRK10747 81 RRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-P----------VVNYLLAAEAAQQRGDEARANQHLERAAELAD 149 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-h----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 446667788999999999999999887776665332 2 344444 5666999999999999999999999
Q ss_pred CcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 524 NFLK-VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 524 ~~~~-a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
+... .....+.++...|++++|+..++++++..|++ .......+..+...|+++ +|+
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~-------------------~~al~ll~~~~~~~gdw~---~a~ 207 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH-------------------PEVLRLAEQAYIRTGAWS---SLL 207 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHHHhHH---HHH
Confidence 9854 44556999999999999999999999999986 333455567777888998 555
Q ss_pred HHHHHHHhcCCCCHHHHH--------HHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 002199 603 ERINEALSISSCSEKLLE--------MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~--------~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg 674 (954)
..+.+..+..+.++..+. .+........+-+.....++......|++.. .+..++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~-----------------~~~~~A 270 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA-----------------LQVAMA 270 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH-----------------HHHHHH
Confidence 555555554443332211 1111122223334444444444444443432 567789
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 002199 675 KSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES 754 (954)
Q Consensus 675 ~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~ 754 (954)
..+...|+.++|...++++++..+ ++.. . +.......++++++++.+++.++..
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~~~~-~~~l--------------------~--~l~~~l~~~~~~~al~~~e~~lk~~--- 324 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLKRQY-DERL--------------------V--LLIPRLKTNNPEQLEKVLRQQIKQH--- 324 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCC-CHHH--------------------H--HHHhhccCCChHHHHHHHHHHHhhC---
Confidence 999999999999999999998433 3220 0 1112234599999999999999998
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
|.++..+..+|.++...++|++|..+|++++++.|+... +..++.++..+|+.++|..+|++++.+.
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888999999999999999999999999999999998654 6689999999999999999999999874
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.5e-16 Score=173.93 Aligned_cols=355 Identities=14% Similarity=0.092 Sum_probs=273.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHH-HHHHH---------cCCHHHHHHHHH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRA-ATRIS---------LGRMREALEDCM 516 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA-~~y~~---------lg~~eeAl~~~~ 516 (954)
.+..++.+|..|....++++|...|.+||..++.+..+ ...++..+...+ ..... .+...+=++.+-
T Consensus 140 essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea---~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~ly 216 (611)
T KOG1173|consen 140 ESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEA---FEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILY 216 (611)
T ss_pred hhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHH---HHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHH
Confidence 34567889999999999999999999999999887511 011111222111 00111 111112222221
Q ss_pred HHH----------hcCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh
Q 002199 517 MAA----------TVDP--------NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK 578 (954)
Q Consensus 517 kAL----------el~P--------~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~ 578 (954)
++. ...| ++.......+..++..++|.+..+..+..++.+|-+..
T Consensus 217 el~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~----------------- 279 (611)
T KOG1173|consen 217 ELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP----------------- 279 (611)
T ss_pred HhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc-----------------
Confidence 111 0112 45778888999999999999999999999999996521
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
.+.-....++..|+.. +-+..-.+.+...|..+..|+..|..|+..|++.+|..+|.++..++|...+
T Consensus 280 --~~~~~ia~l~el~~~n---~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp------- 347 (611)
T KOG1173|consen 280 --CLPLHIACLYELGKSN---KLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP------- 347 (611)
T ss_pred --hHHHHHHHHHHhcccc---hHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH-------
Confidence 1222233566666655 4455556778889999999999999999999999999999999999987655
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
+|...|.+|...++.++|+.+|..|-++.|.... -..-+|..|.+.+.++
T Consensus 348 ----------aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl--------------------P~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 348 ----------AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL--------------------PSLYLGMEYMRTNNLK 397 (611)
T ss_pred ----------HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc--------------------hHHHHHHHHHHhccHH
Confidence 7899999999999999999999999998876643 2334899999999999
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHhcCHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD----E---NYTKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld----P---~~~~al~~lA~ly~~lg~~ee 811 (954)
-|..+|.+|+.+. |.++.++..+|.+.+..+.|.+|+.+|+.++..- + .....+.+||.+|.+++.+++
T Consensus 398 LAe~Ff~~A~ai~----P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 398 LAEKFFKQALAIA----PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHhcC----CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999999 8889999999999999999999999999999432 2 235678999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCC-HHHHHH
Q 002199 812 AASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDT-AADIKK 885 (954)
Q Consensus 812 Ai~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~-~~eIkk 885 (954)
|+.+|+++|.+ .|.+...+..++-.+..++.+..+. ..|.+.|.+.|+.. ..++-+
T Consensus 474 AI~~~q~aL~l-------------~~k~~~~~asig~iy~llgnld~Ai-----d~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 474 AIDYYQKALLL-------------SPKDASTHASIGYIYHLLGNLDKAI-----DHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHc-------------CCCchhHHHHHHHHHHHhcChHHHH-----HHHHHHHhcCCccHHHHHHHH
Confidence 99999999999 5666667778888888888777763 34789999998873 344443
No 42
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-15 Score=164.94 Aligned_cols=304 Identities=12% Similarity=0.024 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
..+..+.++-...-+.-+..++-.-...-|.+. .++..+|.|++..|++.+|+-.|+++.-++|....+.
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nv----------hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNE----------HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccH----------HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 334444444444455556666666677777775 7888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEAL 609 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL 609 (954)
-..|.++...|++++--......+..... ....|+-.+..++..+++. .|+.+..++|
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-------------------ta~~wfV~~~~l~~~K~~~---rAL~~~eK~I 327 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKY-------------------TASHWFVHAQLLYDEKKFE---RALNFVEKCI 327 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhc-------------------chhhhhhhhhhhhhhhhHH---HHHHHHHHHh
Confidence 88888888888888776666666654321 2456777777888888888 8999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 610 SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDL 689 (954)
Q Consensus 610 ~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~ 689 (954)
..+|.+...+.+.|.++..+++.++|+-.|+.++.+.|.... .|..|-.+|+..|.+.+|...
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~-----------------~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE-----------------IYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH-----------------HHHHHHHHHHhhchHHHHHHH
Confidence 999999999999999999999999999999999999987644 677888999999999999999
Q ss_pred HHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 690 LQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG-N-EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 690 l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG-~-~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
-+.++...|.+.. .+...| . .++.-.--++|...|+++|.++ |....+-..+|.
T Consensus 391 An~~~~~~~~sA~--------------------~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~----P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 391 ANWTIRLFQNSAR--------------------SLTLFGTLVLFPDPRMREKAKKFAEKSLKIN----PIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHhhcchh--------------------hhhhhcceeeccCchhHHHHHHHHHhhhccC----CccHHHHHHHHH
Confidence 9998887766543 222233 2 2233345688999999999999 778888889999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++...|.+.++|..++++|...|+ ...+..||.++...+.+++|..+|..||.++|++.
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 999999999999999999998876 45788999999999999999999999999977654
No 43
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=7.3e-17 Score=169.53 Aligned_cols=267 Identities=21% Similarity=0.162 Sum_probs=230.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC---C-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHH
Q 002199 501 TRISLGRMREALEDCMMAATVD---P-------NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAA 570 (954)
Q Consensus 501 ~y~~lg~~eeAl~~~~kALel~---P-------~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~ 570 (954)
+++...+...|...+...++++ | .+.+-...+|.||+.+|-+.+|...++.+|+..|.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~------------ 255 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH------------ 255 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc------------
Confidence 4556677777777776666653 1 12334457899999999999999999999998774
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 571 DGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 571 ~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
++.++.++..|....+.. .|+..|.+.+...|.+..++...|+++..++++++|+++|+.++++.|.+.
T Consensus 256 --------~dTfllLskvY~ridQP~---~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv 324 (478)
T KOG1129|consen 256 --------PDTFLLLSKVYQRIDQPE---RALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV 324 (478)
T ss_pred --------hhHHHHHHHHHHHhccHH---HHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc
Confidence 466777788887777777 899999999999999999999999999999999999999999999999886
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
+ +...+|.-|+.-++++-|+.+|++.+++--.+++ .+.++|.+
T Consensus 325 E-----------------aiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe--------------------Lf~NigLC 367 (478)
T KOG1129|consen 325 E-----------------AIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE--------------------LFCNIGLC 367 (478)
T ss_pred e-----------------eeeeeeeccccCCChHHHHHHHHHHHHhcCCChH--------------------HHhhHHHH
Confidence 6 2334677899999999999999999998665544 57789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
.+-.++++-++..|++|+.... .+...+++|+|+|.+....|++.-|.++|+.||..+|++.+++.+||.+-.+.|+.+
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTAT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhcc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence 9999999999999999998863 235678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH
Q 002199 811 QAASDLQRLVSILENQSA 828 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~ 828 (954)
+|..+|+.|-.+.|...+
T Consensus 447 ~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 447 GARSLLNAAKSVMPDMAE 464 (478)
T ss_pred HHHHHHHHhhhhCccccc
Confidence 999999999999776543
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=4.4e-15 Score=174.42 Aligned_cols=317 Identities=14% Similarity=0.061 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
+..++..|..++..|++++|+..+..+|..+|.+..+|+.||.||.++|+.++|+..+-.|-.++|.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d------------ 206 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD------------ 206 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC------------
Confidence 46677888888999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 572 GLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 572 ~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
...|...+....+++.+. +|.-+|.+||+.+|.+..+++.++.+|.++|++..|+..|.+++++.|..
T Consensus 207 -------~e~W~~ladls~~~~~i~---qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-- 274 (895)
T KOG2076|consen 207 -------YELWKRLADLSEQLGNIN---QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-- 274 (895)
T ss_pred -------hHHHHHHHHHHHhcccHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--
Confidence 455777888888888888 89999999999999999999999999999999999999999999999822
Q ss_pred hhhhccCcchhhHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcch-hhHHHHHHHHHHHHHHH---------
Q 002199 652 SVLADNGSVTYSLARLWR-WRLISKSYFCIGKLEVALDLLQKLEQVGSISDRY-GSEILESSMSLAGTVRA--------- 720 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a-~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~-~~~~l~~~~~l~~~~~~--------- 720 (954)
.+.++.. ....+..+...++-+.|++.++.++.....-... ...++..+.-.......
T Consensus 275 -----------d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~ 343 (895)
T KOG2076|consen 275 -----------DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDR 343 (895)
T ss_pred -----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence 1111111 2234777888888899999999988722111100 01111111100000000
Q ss_pred ----------------------------------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHH
Q 002199 721 ----------------------------------LLH-HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNR 765 (954)
Q Consensus 721 ----------------------------------~~~-~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~l 765 (954)
+.. ...++.+.++..+..+++..+..--... ....+..|+.+
T Consensus 344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~---~~d~~dL~~d~ 420 (895)
T KOG2076|consen 344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW---VSDDVDLYLDL 420 (895)
T ss_pred ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC---hhhhHHHHHHH
Confidence 111 2334444555556666665553332222 25678899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhh
Q 002199 766 AAALQALGQIADAIADCSLAMALDEN-YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSR 844 (954)
Q Consensus 766 A~~y~~lg~~eeAi~~~ekAL~ldP~-~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~ 844 (954)
+.+|...|+|.+|+.+|..++...+. +...|+.+|.||..+|.+++|+++|+++|.+.| ++-.++-
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-------------~~~D~Ri 487 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-------------DNLDARI 487 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------Cchhhhh
Confidence 99999999999999999999887654 467899999999999999999999999999954 4555556
Q ss_pred hhHHHHHhhhhhhhh
Q 002199 845 DLRQACRHLSSMEED 859 (954)
Q Consensus 845 ~L~~a~~~L~~~e~a 859 (954)
.|..++++++..+++
T Consensus 488 ~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKA 502 (895)
T ss_pred hHHHHHHhcCCHHHH
Confidence 777777777776654
No 45
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.4e-15 Score=168.51 Aligned_cols=362 Identities=16% Similarity=0.134 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHH
Q 002199 494 CYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGL 573 (954)
Q Consensus 494 ~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l 573 (954)
-+-..|.+.+..|+|+.|+.+|..+|.++|.+.-.|-++..+|..+|+|++|+..-.+.+++.|+.
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-------------- 69 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-------------- 69 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch--------------
Confidence 345678888999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------------------
Q 002199 574 QKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRK---------------------- 631 (954)
Q Consensus 574 ~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~---------------------- 631 (954)
...|..++..++..|+|+ +|+..|.+.|+.+|++..++..|+.++.....
T Consensus 70 -----~kgy~r~Gaa~~~lg~~~---eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~ 141 (539)
T KOG0548|consen 70 -----AKGYSRKGAALFGLGDYE---EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNY 141 (539)
T ss_pred -----hhHHHHhHHHHHhcccHH---HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhh
Confidence 455778899999999999 88999999999999999999999988833210
Q ss_pred --HHHHHHHHHHhchhhhhhhhhhhhcc---------------------------------------Ccchh------hH
Q 002199 632 --YEEAIQLCEHTLPVAEKNFASVLADN---------------------------------------GSVTY------SL 664 (954)
Q Consensus 632 --~eeAi~~~ekaL~l~p~~~~~~~~~~---------------------------------------~~~~~------~~ 664 (954)
.+.+.....+.++.+|.+......+. ..+.. ..
T Consensus 142 ~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k 221 (539)
T KOG0548|consen 142 SLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVK 221 (539)
T ss_pred hhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHH
Confidence 11222222233333333211111000 00000 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHH--------------------HHHHHHHHHHH-HHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEI--------------------LESSMSLAGTV-RALLH 723 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~--------------------l~~~~~l~~~~-~~~~~ 723 (954)
......-.+|...+...+++.|+++|.+++.++ .+....... ++.-....... .....
T Consensus 222 ~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 222 EKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 122345678999999999999999999999988 432222100 00000000000 11223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccC----------------------CchhhHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIE----------------------SRPFAAICFCNRAAALQALGQIADAIAD 781 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~----------------------~~p~~a~~~~~lA~~y~~lg~~eeAi~~ 781 (954)
+..+|..|...++++.|+.+|.+++.-... ..|..+.-....|..++..|+|..|+..
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 334788999999999999999998864211 1244555666779999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhhc
Q 002199 782 CSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAK 861 (954)
Q Consensus 782 ~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~k 861 (954)
|.+||..+|+++.+|.++|.||..++.+..|+.+.+.+++++|+... .+..-+.++..+.+...+.
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k-------------gy~RKg~al~~mk~ydkAl- 446 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK-------------AYLRKGAALRAMKEYDKAL- 446 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH-------------HHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999999665543 3333355666665555553
Q ss_pred cCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCC
Q 002199 862 KGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDK 898 (954)
Q Consensus 862 ~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK 898 (954)
..|++.|.+. ....++...|++.....+-|.
T Consensus 447 ----eay~eale~d--p~~~e~~~~~~rc~~a~~~~~ 477 (539)
T KOG0548|consen 447 ----EAYQEALELD--PSNAEAIDGYRRCVEAQRGDE 477 (539)
T ss_pred ----HHHHHHHhcC--chhHHHHHHHHHHHHHhhcCC
Confidence 3477777665 455667777777666543333
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=2.5e-15 Score=163.05 Aligned_cols=287 Identities=13% Similarity=0.040 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG--RMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg--~~eeAl~~~~kALel~P~~~~ 527 (954)
.-...+..++++|+++.|++.+.-.-..+.... ..+-.++..+++.+| ++..|-++...|+.++.-++.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~---------saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~ 491 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTA---------SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA 491 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhh---------HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH
Confidence 345677889999999999999876655555443 356677777777754 789999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
++.+.|.+-+..|++++|.+.|+.+|..+... .+.+++.+..+-.+|+.+ +|+++|-+
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-------------------~ealfniglt~e~~~~ld---eald~f~k 549 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASC-------------------TEALFNIGLTAEALGNLD---EALDCFLK 549 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHH-------------------HHHHHHhcccHHHhcCHH---HHHHHHHH
Confidence 99999999999999999999999999976654 567888888888999999 78888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
...+--++.++++.+|.+|..+.+..+||++|.++..+-|.++. ++..||.+|-+.|+-.+|.
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~-----------------ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA-----------------ILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH-----------------HHHHHHHHhhcccchhhhh
Confidence 77777789999999999999999999999999999999998865 5678999999999999999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
.++-...+..|.+.. ..--+|..|+...-+++||.+|++|.-+. |........+|.
T Consensus 613 q~~ydsyryfp~nie--------------------~iewl~ayyidtqf~ekai~y~ekaaliq----p~~~kwqlmias 668 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIE--------------------TIEWLAAYYIDTQFSEKAINYFEKAALIQ----PNQSKWQLMIAS 668 (840)
T ss_pred hhhhhcccccCcchH--------------------HHHHHHHHHHhhHHHHHHHHHHHHHHhcC----ccHHHHHHHHHH
Confidence 999888887776633 12226777888888999999999998888 777778888999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
|+.+.|+|.+|...|...-..-|.+.+.+..|.++.-.+|-
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999988877774
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=2.2e-15 Score=167.14 Aligned_cols=209 Identities=13% Similarity=0.066 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..+..+..|+.+|..+...|++++|+..|+++++++|+++ .+|+++|.++..+|++++|+..|+++++++
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~----------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA----------DAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3456688999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|++..++..+|.++...|++++|++.|+++++++|++... ..+. ......++++ +|+
T Consensus 129 P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-----------------~~~~---~l~~~~~~~~---~A~ 185 (296)
T PRK11189 129 PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-----------------ALWL---YLAESKLDPK---QAK 185 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHH---HHHHccCCHH---HHH
Confidence 9999999999999999999999999999999999976210 0011 1122345566 777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH--HHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEA--IQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeA--i~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
..+.+++...+.. .+. .+.+++.+|++.++ +..+.+.+...+...+ ....+|+.+|.+|..+
T Consensus 186 ~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~-------------~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 186 ENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAE-------------RLCETYFYLAKYYLSL 249 (296)
T ss_pred HHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH-------------HHHHHHHHHHHHHHHC
Confidence 7776666443222 122 35666667776443 4334433333222110 1123789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 002199 681 GKLEVALDLLQKLEQVGSIS 700 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~ 700 (954)
|++++|+.+|++++.++|.+
T Consensus 250 g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 250 GDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCHHHHHHHHHHHHHhCCch
Confidence 99999999999999998744
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=1.7e-15 Score=159.03 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
...+..+..+|..++..|++++|+..|++++..+|.+. .++..+|.++..+|++++|+..+++++++.|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----------LAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34578889999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
+..++..+|.++...|++++|+..|++++...+.. .....+..++..+...|+++ +|+..
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~---~A~~~ 157 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-----------------QPARSLENAGLCALKAGDFD---KAEKY 157 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-----------------cchHHHHHHHHHHHHcCCHH---HHHHH
Confidence 99999999999999999999999999998753210 01234566788888999999 78889
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
+.+++...|.++.++..+|.++...|++++|+..+++++...|.+.. .+..++.++...|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE-----------------SLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999998654422 4456788999999999
Q ss_pred HHHHHHHHHHhh
Q 002199 685 VALDLLQKLEQV 696 (954)
Q Consensus 685 eAl~~l~kal~l 696 (954)
+|..+.+.+...
T Consensus 221 ~a~~~~~~~~~~ 232 (234)
T TIGR02521 221 AAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhh
Confidence 999988877654
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=6.4e-16 Score=162.53 Aligned_cols=297 Identities=14% Similarity=0.078 Sum_probs=248.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLV-LCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la-~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
+.|....++++ ..++...+...|-......+++.-.-+.. ...-.+. +.-..+|.||+.+|-+.+|...++.+|+.
T Consensus 176 ~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~-~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q 252 (478)
T KOG1129|consen 176 ERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSG-STGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ 252 (478)
T ss_pred cChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccc-cccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc
Confidence 44666666665 35777888888887777666654221100 0001111 23346899999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
.| .++.+..|+.+|....+...|+..|...++..|.+ +.-....++.+...++++ +|
T Consensus 253 ~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~-------------------VT~l~g~ARi~eam~~~~---~a 309 (478)
T KOG1129|consen 253 FP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD-------------------VTYLLGQARIHEAMEQQE---DA 309 (478)
T ss_pred CC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-------------------hhhhhhhHHHHHHHHhHH---HH
Confidence 76 56889999999999999999999999999999975 444566777777778888 89
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
+++|..+++.+|.+.++...+|.-|+.-++.+-|+.+|+++|++.-.+.+ .+.++|.+.+..+
T Consensus 310 ~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe-----------------Lf~NigLCC~yaq 372 (478)
T KOG1129|consen 310 LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE-----------------LFCNIGLCCLYAQ 372 (478)
T ss_pred HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-----------------HHhhHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999876655 5778999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
+++-++..|++++........ .+..|+++|.+....|++.-|..+|+-+|..+ +++..+
T Consensus 373 Q~D~~L~sf~RAlstat~~~~-----------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d----~~h~ea 431 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQ-----------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSD----AQHGEA 431 (478)
T ss_pred chhhhHHHHHHHHhhccCcch-----------------hhhhhhccceeEEeccchHHHHHHHHHHhccC----cchHHH
Confidence 999999999999987654432 35789999999999999999999999999988 889999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+.|||.+..+.|+.++|..+++.|-.+.|.-.+..++++.+-
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 999999999999999999999999999999888777776543
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=4.4e-15 Score=155.77 Aligned_cols=203 Identities=18% Similarity=0.078 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
...++.++..++..++++ +|+..+.+++...|.+..++..+|.++..+|++++|+..+++++...|.+..
T Consensus 31 ~~~~~~la~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------- 100 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE---VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD------- 100 (234)
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------
Confidence 456778889999999999 8889999999999999999999999999999999999999999999887643
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
.+..+|.++...|++++|+..|++++...+... ....+..+|.++...|+++
T Consensus 101 ----------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 101 ----------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ------------------PARSLENAGLCALKAGDFD 152 (234)
T ss_pred ----------HHHHHHHHHHHcccHHHHHHHHHHHHhcccccc------------------chHHHHHHHHHHHHcCCHH
Confidence 577889999999999999999999987432111 1234556899999999999
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
+|+..|.+++... |....++..+|.++...|++++|+..+++++.+.|.++..+..++.++...|++++|..+.+.
T Consensus 153 ~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 153 KAEKYLTRALQID----PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHhC----cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999998 566788999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHh
Q 002199 819 LVSIL 823 (954)
Q Consensus 819 AL~l~ 823 (954)
+..+.
T Consensus 229 ~~~~~ 233 (234)
T TIGR02521 229 LQKLF 233 (234)
T ss_pred HHhhC
Confidence 77664
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=3.8e-16 Score=176.09 Aligned_cols=242 Identities=14% Similarity=0.135 Sum_probs=151.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH
Q 002199 496 SNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK 575 (954)
Q Consensus 496 ~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~ 575 (954)
+..|..+++.|+..+|+-.|+.|+..+|.++.+|..||.++...++-..|+..+++|++++|++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N---------------- 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN---------------- 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc----------------
Confidence 5789999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
...++.+|..|...+.-. +|+.++.+.|...|....+... . ..+++.. +..
T Consensus 353 ---leaLmaLAVSytNeg~q~---~Al~~L~~Wi~~~p~y~~l~~a--~---~~~~~~~------------~~s------ 403 (579)
T KOG1125|consen 353 ---LEALMALAVSYTNEGLQN---QALKMLDKWIRNKPKYVHLVSA--G---ENEDFEN------------TKS------ 403 (579)
T ss_pred ---HHHHHHHHHHHhhhhhHH---HHHHHHHHHHHhCccchhcccc--C---ccccccC------------CcC------
Confidence 556677777777766555 6777777777666533211100 0 0000000 000
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG 735 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g 735 (954)
+. ....+..-.++|-.+....|.... ...+..||.+|...+
T Consensus 404 --------~~-------------~~~~l~~i~~~fLeaa~~~~~~~D------------------pdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 404 --------FL-------------DSSHLAHIQELFLEAARQLPTKID------------------PDVQSGLGVLYNLSG 444 (579)
T ss_pred --------CC-------------CHHHHHHHHHHHHHHHHhCCCCCC------------------hhHHhhhHHHHhcch
Confidence 00 000001111222333333332110 112334566666666
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 736 RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
+|++|+.+|+.||... |.+..+|+.||..+..-.+.++||..|.+||++.|.++.++|+||..++.+|.|++|+.+
T Consensus 445 efdraiDcf~~AL~v~----Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK----PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHHhcC----CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 6666666666666665 556666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhh
Q 002199 816 LQRLVSILEN 825 (954)
Q Consensus 816 ~ekAL~l~p~ 825 (954)
|-.||.+.++
T Consensus 521 lL~AL~mq~k 530 (579)
T KOG1125|consen 521 LLEALSMQRK 530 (579)
T ss_pred HHHHHHhhhc
Confidence 6666666554
No 52
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=5.7e-15 Score=171.04 Aligned_cols=215 Identities=20% Similarity=0.130 Sum_probs=164.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhc
Q 002199 585 CSGKLLEQKTSEAASSALERINEALSI--------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLAD 656 (954)
Q Consensus 585 ~a~~ll~~g~~~~a~eAL~~l~kaL~~--------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~ 656 (954)
.|..|...+++. +|+..|++++.+ +|....++.+||.+|...|++++|..+|++++++.......
T Consensus 247 ~a~~y~~~~k~~---eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~---- 319 (508)
T KOG1840|consen 247 LALVYRSLGKYD---EAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA---- 319 (508)
T ss_pred HHHHHHHhccHH---HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc----
Confidence 444455555555 444444444433 35557789999999999999999999999999997752110
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002199 657 NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR 736 (954)
Q Consensus 657 ~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~ 736 (954)
...... -.+..++.++...+++++|+.+|++++++.-..+.. ..+.....+.++|..|+..|+
T Consensus 320 ---~~~~v~--~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~------------~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 320 ---SHPEVA--AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE------------DNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred ---ChHHHH--HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc------------cchHHHHHHHHHHHHHHHhcc
Confidence 011111 256778999999999999999999998864321111 122334567789999999999
Q ss_pred HHHHHHHHHHHHhhcc----CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNI----ESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL-------DENYTKAVSRRAALHEM 805 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~----~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l-------dP~~~~al~~lA~ly~~ 805 (954)
|.+|.++|++||.+.. ..++.....+.++|..|..++++.+|...|..++.+ .|+....|.+||.+|..
T Consensus 383 ~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 9999999999998852 234566788999999999999999999999998876 35667889999999999
Q ss_pred hcCHHHHHHHHHHHHHHh
Q 002199 806 IRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 806 lg~~eeAi~~~ekAL~l~ 823 (954)
+|++++|+++.++++...
T Consensus 463 ~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 463 QGNYEAAEELEEKVLNAR 480 (508)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999999998773
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=1.3e-13 Score=156.13 Aligned_cols=330 Identities=15% Similarity=0.055 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+.-..|..-+..+.+.+-++-|+..|..+|+..|... .+|...+..--..|..+.-...+++|+..-|.
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~----------slWlra~~~ek~hgt~Esl~Allqkav~~~pk 582 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK----------SLWLRAAMFEKSHGTRESLEALLQKAVEQCPK 582 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh----------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc
Confidence 34556788888888999999999999999999999987 78888888888889999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHH----------HHHHHHHHHh----HHHHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE----------AADGLQKAQK----VTEYINCSGKLL 590 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~e----------a~~~l~~~~~----~~~~l~~a~~ll 590 (954)
....|+..+..+...|+...|+..+..+++.+|.+......... +...+.++.. ...|+..+....
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 99999999999999999999999999999999975332211111 1111111111 223444444444
Q ss_pred HhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 591 EQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 591 ~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
.++..+ +|+..++++|+..|....+|+++|+++.++++.+.|...|..-++..|.... .|
T Consensus 663 ~ld~~e---eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip-----------------LW 722 (913)
T KOG0495|consen 663 YLDNVE---EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP-----------------LW 722 (913)
T ss_pred HhhhHH---HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch-----------------HH
Confidence 555555 8999999999999999999999999999999999999999999999998765 68
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..|+.+--..|....|...++++.-.+|.+.... ...-..-++.|..+.|.....+||+-
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lw--------------------le~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLW--------------------LESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH--------------------HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999998876533 33344445667777777777777766
Q ss_pred ccCCc--------------------------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 751 NIESR--------------------------PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 751 ~~~~~--------------------------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
.|.+. ..++.+++..|.+++...++++|..+|.+++.++|++.++|...=..+.
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL 862 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH
Confidence 54321 3456677788888888888999999999999999988888888888888
Q ss_pred HhcCHHHHHHHHHHHHHHhh
Q 002199 805 MIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 805 ~lg~~eeAi~~~ekAL~l~p 824 (954)
..|.-++-.+.|.+.....|
T Consensus 863 ~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HhCCHHHHHHHHHHHhccCC
Confidence 88888888888888877743
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.69 E-value=2.4e-14 Score=165.84 Aligned_cols=317 Identities=19% Similarity=0.115 Sum_probs=249.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCcHHH
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-----------RMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-----------~~eeAl~~~~kALel~P~~~~a 528 (954)
+.+.+++++++-+++|...... .......+|..+|.+|-.+- ...++++.+++|++++|+++.+
T Consensus 406 ~l~~~eegldYA~kai~~~~~~-----~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLGGQ-----RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred chhhhhhHHHHHHHHHHHhhhh-----hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 4577778888888888754221 12223577888888886542 3578999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEA 608 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ka 608 (954)
.+.++.-|..+++...|+.+.+++|++++.+ .+..|.-++..+-..+++. .|+...+.+
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~------------------~~~~whLLALvlSa~kr~~---~Al~vvd~a 539 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGD------------------SAKAWHLLALVLSAQKRLK---EALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc------------------cHHHHHHHHHHHhhhhhhH---HHHHHHHHH
Confidence 9999999999999999999999999997654 2556777788888888888 788888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh-------------------ccCcc---------
Q 002199 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA-------------------DNGSV--------- 660 (954)
Q Consensus 609 L~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~-------------------~~~~~--------- 660 (954)
+...|.+..+......+-...++.++|+..+...|.+-...+..... ....+
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 88888877777777777777888888888777766554311100000 00000
Q ss_pred ------------------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 002199 661 ------------------------TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG 716 (954)
Q Consensus 661 ------------------------~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~ 716 (954)
..-+.....|...+..+...+..++|..++.++-.++|..
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------- 683 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS---------------- 683 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh----------------
Confidence 0011122356778888999999999999999998876543
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHhCCCCHH
Q 002199 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA--DCSLAMALDENYTK 794 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~--~~ekAL~ldP~~~~ 794 (954)
...|+..|..+...|++.+|.+.|..|+.++ |....+...+|.++...|+-.-|.. .+..+++++|.+++
T Consensus 684 ----~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld----P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 684 ----ASVYYLRGLLLEVKGQLEEAKEAFLVALALD----PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred ----HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 3467778999999999999999999999999 7777888899999999998777777 99999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+|+.+|.++.++|+.++|..+|+.++++.+.+
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999996553
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.68 E-value=5.4e-15 Score=171.23 Aligned_cols=278 Identities=18% Similarity=0.095 Sum_probs=217.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|....++..+|..|..+|+|+.|+..+++|++..-+.. +.....+......+|.+|+.+++|.+|+..|++||
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~--G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTS--GLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcc--CccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556788888888899999999999999999999999843322 22233345666779999999999999999999999
Q ss_pred hc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002199 520 TV--------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE 591 (954)
Q Consensus 520 el--------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~ 591 (954)
.+ +|..+.++.+||.+|...|+|++|..++++|+++...
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~--------------------------------- 315 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK--------------------------------- 315 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH---------------------------------
Confidence 86 4666889999999999999999999999999886221
Q ss_pred hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHH
Q 002199 592 QKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWR 671 (954)
Q Consensus 592 ~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~ 671 (954)
......|.-...+..++.++..++++++|+.++++++++..+-+.. ....... .+.
T Consensus 316 ---------------~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~-------~~~~~a~--~~~ 371 (508)
T KOG1840|consen 316 ---------------LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE-------DNVNLAK--IYA 371 (508)
T ss_pred ---------------hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc-------cchHHHH--HHH
Confidence 0011223345567888999999999999999999999886532211 0112222 577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
.||.+|+..|+|.+|.++|++|+.+....... ........+.++|..+.+.+++.+|...|.+++.+.
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~------------~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQILRELLGK------------KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhcccC------------cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 89999999999999999999999864222110 011223456678999999999999999999998874
Q ss_pred c---CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 752 I---ESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 752 ~---~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
. .+.|.....|.|||.+|..+|++++|+++.++++..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3 234778889999999999999999999999999854
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=2e-14 Score=166.74 Aligned_cols=281 Identities=10% Similarity=-0.008 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
......|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..+|.++++..|+..
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~------------ 152 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN------------ 152 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc------------
Confidence 44567788889999999999999999999999999999999999999999999999999999888641
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
+......+..++..++++ .|+..++..++..|.++.++..++.++...|++++|+..+.+.++....+...
T Consensus 153 ------l~~~~~~a~l~l~~~~~~---~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~ 223 (409)
T TIGR00540 153 ------ILVEIARTRILLAQNELH---AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE 223 (409)
T ss_pred ------hHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 112334577888899999 78888999999999999999999999999999999999999998764322110
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
+.. .......-++..+..+++...+.++....|.... .....+..++..+.
T Consensus 224 -----------~~~--l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~----------------~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 224 -----------FAD--LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRR----------------HNIALKIALAEHLI 274 (409)
T ss_pred -----------HHH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHh----------------CCHHHHHHHHHHHH
Confidence 000 0111122223445555566677777776653211 11234556889999
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT--KAVSRRAALHEMIRDYT 810 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~--~al~~lA~ly~~lg~~e 810 (954)
..|++++|+..++++++..|++...... ..+.......++...++..++++++.+|+++ ..+..+|.+++.+|+|+
T Consensus 275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~--~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKKLGDDRAISLP--LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred HCCChHHHHHHHHHHHhhCCCcccchhH--HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 9999999999999999998654321111 2233344456889999999999999999999 88999999999999999
Q ss_pred HHHHHHH--HHHHHhhh
Q 002199 811 QAASDLQ--RLVSILEN 825 (954)
Q Consensus 811 eAi~~~e--kAL~l~p~ 825 (954)
+|.++|+ +++++.|+
T Consensus 353 ~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 353 EAADAFKNVAACKEQLD 369 (409)
T ss_pred HHHHHHHHhHHhhcCCC
Confidence 9999999 56667443
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.67 E-value=2.1e-13 Score=158.03 Aligned_cols=358 Identities=16% Similarity=0.126 Sum_probs=274.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD-- 522 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~-- 522 (954)
..++..|..+...+..-|+|..+.++|++++...-... ..|+.++.+|...|....|+..++..+.+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~----------e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEH----------ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH----------HHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 35677788888888999999999999999999877765 899999999999999999999999999998
Q ss_pred CCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhcCh--
Q 002199 523 PNFLKVYMRAAK-CHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKL----LEQKTS-- 595 (954)
Q Consensus 523 P~~~~a~~~LA~-iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~l----l~~g~~-- 595 (954)
|.++..++..+. |+...+.+++++.+..+++......... + ....++.++..| ......
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~----------l----~~~~~l~lGi~y~~~A~~a~~~se 455 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSH----------L----KPRGYLFLGIAYGFQARQANLKSE 455 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhh----------h----hhhHHHHHHHHHHhHhhcCCChHH
Confidence 777766666554 5567899999999999999843211000 0 011112222211 111111
Q ss_pred --HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHH
Q 002199 596 --EAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLI 673 (954)
Q Consensus 596 --~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~L 673 (954)
.-..++++.++++++.+|.++.+.+.++.-|...++.+.|+...++++.+++.+.. -.|..+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~----------------~~whLL 519 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA----------------KAWHLL 519 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH----------------HHHHHH
Confidence 01127888999999999999999999999999999999999999999999765532 268889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchh-------------hHHHHHHHHHHH------------------------
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYG-------------SEILESSMSLAG------------------------ 716 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~-------------~~~l~~~~~l~~------------------------ 716 (954)
+.++...+++.+|+....-++.-.+.+.... -..+..+.....
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence 9999999999999999988887766622110 000000000000
Q ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 717 ----------------------------------------------TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 717 ----------------------------------------------~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
.......|...+..+...+..++|..++.+|-.+
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 0011223445677888888899999999999888
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHHhhhhHH
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS--DLQRLVSILENQSA 828 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~--~~ekAL~l~p~~~~ 828 (954)
+ |..+.+|+.+|.++...|++.+|...|..|+.++|+++.....+|.++...|+..-|.. .+..++++
T Consensus 680 ~----~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~------ 749 (799)
T KOG4162|consen 680 D----PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL------ 749 (799)
T ss_pred c----hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------
Confidence 8 88999999999999999999999999999999999999999999999999998887777 99999999
Q ss_pred HHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 829 EKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 829 ~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
+|....+|..|+...+.++...++
T Consensus 750 -------dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 750 -------DPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred -------CCCCHHHHHHHHHHHHHccchHHH
Confidence 666777788999988887776654
No 58
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.66 E-value=7.2e-15 Score=158.48 Aligned_cols=320 Identities=16% Similarity=0.134 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD---- 522 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~---- 522 (954)
.+-.+...|..+++.|++...+..|+.||+.-.++ ...+..+|..+|.+|+.+++|++|+++-..-|.+.
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeD------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg 89 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTED------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG 89 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchH------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc
Confidence 36678889999999999999999999999998776 35678899999999999999999999765444332
Q ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh-----
Q 002199 523 --PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS----- 595 (954)
Q Consensus 523 --P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~----- 595 (954)
-..+++--+||..+..+|.|++|+.+..+-|.+.. +.-.+.....++++++..|...|+.
T Consensus 90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~ar-------------eLgDrv~e~RAlYNlgnvYhakGk~~g~~~ 156 (639)
T KOG1130|consen 90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAR-------------ELGDRVLESRALYNLGNVYHAKGKCTGLEA 156 (639)
T ss_pred chhccccccccccchhhhhcccchHHHHHHHHhHHHH-------------HHhHHHhhhHHHhhhhhhhhhcccccCCCC
Confidence 23466778899999999999999999998877532 2223445567788888888876532
Q ss_pred ------------HHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhcc
Q 002199 596 ------------EAASSALERINEALSISSC------SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADN 657 (954)
Q Consensus 596 ------------~~a~eAL~~l~kaL~~~P~------~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~ 657 (954)
+....|+++|..-|++... ...++-+||..|+.+|+|+.||..-+.-|.+......
T Consensus 157 pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD------ 230 (639)
T KOG1130|consen 157 PEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD------ 230 (639)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh------
Confidence 1122566666666554322 2346777889999999999999988888887764422
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
.....+ ++.+||.+|+-+|+++.|+++|++.+.+ .+.+.....++...+.+|+.|.-..++
T Consensus 231 ---rAaeRR--A~sNlgN~hiflg~fe~A~ehYK~tl~L--------------Aielg~r~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 231 ---RAAERR--AHSNLGNCHIFLGNFELAIEHYKLTLNL--------------AIELGNRTVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred ---HHHHHH--hhcccchhhhhhcccHhHHHHHHHHHHH--------------HHHhcchhHHHHHHHHhhhHHHHHHHH
Confidence 111222 6788999999999999999999998764 334445556677788899999999999
Q ss_pred HHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHhcCH
Q 002199 738 TEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD-----EN-YTKAVSRRAALHEMIRDY 809 (954)
Q Consensus 738 eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld-----P~-~~~al~~lA~ly~~lg~~ 809 (954)
++||.++.+-|.+.. ++......+++.||.+|..+|..++|+.+.++.+++. +. ...+..++..+...+|.-
T Consensus 292 ~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 999999999777642 2334556778889999999999999999988887652 32 345566666666666654
Q ss_pred H
Q 002199 810 T 810 (954)
Q Consensus 810 e 810 (954)
+
T Consensus 372 d 372 (639)
T KOG1130|consen 372 D 372 (639)
T ss_pred c
Confidence 4
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.6e-14 Score=156.16 Aligned_cols=284 Identities=12% Similarity=0.046 Sum_probs=246.2
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...+.+...+..+|.+++..|++.+|+..|+++.-++|..- ...-..|..+...|+++.--..-...+.+
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----------EAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----------hhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 34577888999999999999999999999999999999975 67777888899999999888888888888
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
+.....-|+--+.+++...++..|+.+-++++..+|.+ +..++-++..++..++.+ +|
T Consensus 296 ~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-------------------~~alilKG~lL~~~~R~~---~A 353 (564)
T KOG1174|consen 296 VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-------------------HEALILKGRLLIALERHT---QA 353 (564)
T ss_pred hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-------------------chHHHhccHHHHhccchH---HH
Confidence 87777888889999999999999999999999999976 677888999999999998 78
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH-HHHH-H
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS-KSYF-C 679 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg-~~y~-~ 679 (954)
+-.|+.+..+.|...+.|..|-.+|+..|++.||.-..+.++...|.+.. ++.++| .+++ .
T Consensus 354 ~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~-----------------~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 354 VIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR-----------------SLTLFGTLVLFPD 416 (564)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh-----------------hhhhhcceeeccC
Confidence 88899999999999999999999999999999999999999999887754 334444 3332 2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
----++|.+++++++.+.|.... +...++..+...|++..+|..++++|...+ +.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~Y~~--------------------AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-----D~ 471 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPIYTP--------------------AVNLIAELCQVEGPTKDIIKLLEKHLIIFP-----DV 471 (564)
T ss_pred chhHHHHHHHHHhhhccCCccHH--------------------HHHHHHHHHHhhCccchHHHHHHHHHhhcc-----cc
Confidence 33358999999999999997754 334478889999999999999999998863 45
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.++..||.++...+.+.+|+.+|..||.++|++-.++-.+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 7889999999999999999999999999999987766544
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.65 E-value=4.7e-13 Score=152.56 Aligned_cols=337 Identities=14% Similarity=0.090 Sum_probs=192.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|+..+.+..+|..+...|+-++|..+...++..++..+ .||.-+|.++....+|++||.+|+.||.+.|
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~----------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~ 106 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH----------VCWHVLGLLQRSDKKYDEAIKCYRNALKIEK 106 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc----------hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 344444555555555555555555555555555555544 4555555555555555555555555555555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
++...|..++.+..++++|+.....-.+.|++.|.. ...|+..+..+...|++..+..-++
T Consensus 107 dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~-------------------ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 107 DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-------------------RASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554444444444432 4456667777777777776666666
Q ss_pred HHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 604 RINEALSISSCS-----EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 604 ~l~kaL~~~P~~-----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
.|.+.....|.. ..+......++...|.+++|.+.+..--..--+. +-.....+.+++
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk-----------------la~~e~ka~l~~ 230 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK-----------------LAFEETKADLLM 230 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH-----------------HHHhhhHHHHHH
Confidence 666655433322 3344455666667777666666554422111111 112334577788
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHcCCHHHHH---
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHK--------------SAGNEAFKSGRYTEAV--- 741 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~--------------~lG~~~~~~g~~eeAi--- 741 (954)
.++++++|+..|...+...|++..........+.........+..++ .++.....-.++.+.+
T Consensus 231 kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 88888888888888888877776544332222211111111110000 0000000000111111
Q ss_pred --------------------------HHHHHHHhh-----cc------------CCchhhHHHHHHHHHHHHHhcCHHHH
Q 002199 742 --------------------------EHYTVALST-----NI------------ESRPFAAICFCNRAAALQALGQIADA 778 (954)
Q Consensus 742 --------------------------~~y~kAL~l-----~~------------~~~p~~a~~~~~lA~~y~~lg~~eeA 778 (954)
..+++.+.. .+ +.+....++++.++..|..+|+++.|
T Consensus 311 L~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 311 LRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 122221110 00 12235667788899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 779 IADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 779 i~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
..+++.||..-|..++.++..|+++...|++++|...+..+.+++-.+
T Consensus 391 ~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 391 LEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999999999999999999986554
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.64 E-value=3.6e-14 Score=144.41 Aligned_cols=213 Identities=17% Similarity=0.058 Sum_probs=184.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
...+.+.+...+|..|++.|++..|...+++||+.+|++. .+|..+|.+|..+|+.+.|-+.|++|+.++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~ 99 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----------LAHLVRAHYYQKLGENDLADESYRKALSLA 99 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Confidence 3355678899999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|++..++.+.|..++.+|++++|...|++|+. +|... .....+.+.+...++.|+++ .|.
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~----------------~~s~t~eN~G~Cal~~gq~~---~A~ 159 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYG----------------EPSDTLENLGLCALKAGQFD---QAE 159 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCC----------------CcchhhhhhHHHHhhcCCch---hHH
Confidence 99999999999999999999999999999998 34321 12456788899999999999 889
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
.+|.++|.++|+.+.....++..++..|+|-.|..+++......+.... .+.+...+--.+|+
T Consensus 160 ~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~-----------------sL~L~iriak~~gd 222 (250)
T COG3063 160 EYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE-----------------SLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH-----------------HHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988776653322 22233456668899
Q ss_pred HHHHHHHHHHHHhhCCCCcc
Q 002199 683 LEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~ 702 (954)
-+.|-.+=.++....|....
T Consensus 223 ~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 223 RAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHHHHhCCCcHH
Confidence 98888887777777776654
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=3.6e-13 Score=155.67 Aligned_cols=278 Identities=8% Similarity=-0.013 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA-AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L-A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
.-++..|...+..|+|+.|.+.+.++-+..+. +..++.+ +.+...+|+++.|..+|.++.+..|+..
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----------- 152 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----------- 152 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-----------
Confidence 44566777888899999999888876665433 4444444 6666999999999999999999888751
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 572 GLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 572 ~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
+...+..+..++..|+++ +|+..++++++..|.++.++..++.+|...|++++|+..+.+..+..+.+..
T Consensus 153 -------~~~~l~~a~l~l~~g~~~---~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 153 -------LPVEITRVRIQLARNENH---AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred -------HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 122334477888899999 7888999999999999999999999999999999999888888776543211
Q ss_pred hhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 652 SVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA 731 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~ 731 (954)
.. ...+..++..+........+ ...+.++.+..|.. .......+...+..+
T Consensus 223 ~~---------~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~~----------------~~~~~~~~~~~A~~l 273 (398)
T PRK10747 223 HR---------AMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSRK----------------TRHQVALQVAMAEHL 273 (398)
T ss_pred HH---------HHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCHH----------------HhCCHHHHHHHHHHH
Confidence 00 00000122222111122222 23333333322211 011233556689999
Q ss_pred HHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 002199 732 FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 732 ~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~ee 811 (954)
...|+.++|...+++++... + +..+....+. ...++.++++..+++.++.+|+++..++.+|.++...++|++
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~----~-~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQ----Y-DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC----C-CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999854 2 2333222332 344999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHH
Q 002199 812 AASDLQRLVSILENQSA 828 (954)
Q Consensus 812 Ai~~~ekAL~l~p~~~~ 828 (954)
|..+|++++++.|+...
T Consensus 347 A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 347 ASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHHHHhcCCCHHH
Confidence 99999999999665443
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.62 E-value=7.1e-13 Score=150.63 Aligned_cols=319 Identities=14% Similarity=-0.020 Sum_probs=231.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
+|+.+.++..+|..+...|+++.|...|.++++..|.+.+ -......++.++...|++++|+..++++++.+|
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P 74 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT-------ERERAHVEALSAWIAGDLPKALALLEQLLDDYP 74 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 4677888999999999999999999999999999887641 135677889999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLN----SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~----l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
++..++.. +..+..+|.+..+...+.+++. ..|.. ......++..+...|+++
T Consensus 75 ~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~~~~~a~~~~~~G~~~--- 131 (355)
T cd05804 75 RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-------------------WYLLGMLAFGLEEAGQYD--- 131 (355)
T ss_pred CcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-------------------HHHHHHHHHHHHHcCCHH---
Confidence 99887776 6667766666655555555553 22221 233445677888999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+|+..+++++.+.|.++.++..+|.++...|++++|+.++++++...|.... .....|..++.++..
T Consensus 132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~-------------~~~~~~~~la~~~~~ 198 (355)
T cd05804 132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM-------------LRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc-------------hhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999998774311 111246678999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hccCCc
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS----TNIESR 755 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~----l~~~~~ 755 (954)
.|++++|+..|++++...|..... ..... ...+...+...|....+..+ +.+.. ..+.
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~-- 260 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPA-LDLLD--------------AASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD-- 260 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChH-HHHhh--------------HHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--
Confidence 999999999999997655532210 00000 00011122222322222221 11111 1111
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALDEN---------YTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
+........++.++...|+.++|...++......-. .......+|.++...|++++|+..+..++.+.
T Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 261 HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 222233346888899999999999999887654322 35667788999999999999999999999984
No 64
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=2.3e-15 Score=165.74 Aligned_cols=253 Identities=19% Similarity=0.147 Sum_probs=114.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-c-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHH
Q 002199 497 NRAATRISLGRMREALEDCMMAAT-V-DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ 574 (954)
Q Consensus 497 ~lA~~y~~lg~~eeAl~~~~kALe-l-~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~ 574 (954)
.+|.+++..|++++|++.+.+.+. . .|++...|..+|.+...++++++|+..|++++..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~----------------- 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK----------------- 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------
Confidence 557777777777777777755443 3 366677777777777777777777777777666433
Q ss_pred HHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 575 KAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 575 ~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
..+..+..++.+ ...+++++|+.+++++.+..++. .
T Consensus 76 ---------------------------------------~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-~--- 111 (280)
T PF13429_consen 76 ---------------------------------------ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-R--- 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------cccccccccccc-ccccccccccccccccccccccc-c---
Confidence 334445555666 68899999999999888765432 1
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
.+..+..++...++++++...++++....+.. .....+..+|.++.+.
T Consensus 112 --------------~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~------------------~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 112 --------------YLLSALQLYYRLGDYDEAEELLEKLEELPAAP------------------DSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------H-HHHTT-HHHHHHHHHHHHH-T---------------------T-HHHHHHHHHHHHHC
T ss_pred --------------hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC------------------CCHHHHHHHHHHHHHc
Confidence 23455678899999999999999987543211 1234567789999999
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
|++++|+..|++++.++ |.+..++..++.++...|+++++...+.......|.++..+..+|.+|..+|++++|+.
T Consensus 160 G~~~~A~~~~~~al~~~----P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 160 GDPDKALRDYRKALELD----PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp CHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred CCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999 88888999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 815 DLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 815 ~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
+|+++++..| +++.....++.+....+..+.+
T Consensus 236 ~~~~~~~~~p-------------~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 236 YLEKALKLNP-------------DDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHHHHHHHST-------------T-HHHHHHHHHHHT--------
T ss_pred cccccccccc-------------cccccccccccccccccccccc
Confidence 9999999955 4444556677776655554443
No 65
>PLN02789 farnesyltranstransferase
Probab=99.61 E-value=2.5e-13 Score=151.04 Aligned_cols=209 Identities=12% Similarity=0.036 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMAATVDP 523 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kALel~P 523 (954)
++..+++-.+-.++...+.+++|+..+.++|+++|.+. .+|..++.++..++ .+++|+..+.++++.+|
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y----------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~np 103 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNY----------TVWHFRRLCLEALDADLEEELDFAEDVAEDNP 103 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence 44455554444456778899999999999999999997 89999999999999 68999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEI--ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~--eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
++..+|..++.++..+|+. ++++.++.++++++|.+ ...|..++..+...+.++ ++
T Consensus 104 knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------------------y~AW~~R~w~l~~l~~~~---ee 161 (320)
T PLN02789 104 KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------------------YHAWSHRQWVLRTLGGWE---DE 161 (320)
T ss_pred cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------------------HHHHHHHHHHHHHhhhHH---HH
Confidence 9999999999999999974 78899999999999987 566788888888888888 89
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCH----HHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 002199 602 LERINEALSISSCSEKLLEMKADALYML---RKY----EEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~l---g~~----eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg 674 (954)
++.+.++|+++|.+..+|..++.++..+ +.+ ++++.++.++|.++|.+.. +|..++
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S-----------------aW~Yl~ 224 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES-----------------PWRYLR 224 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC-----------------HHHHHH
Confidence 9999999999999999999999998776 333 5789999999999999865 677788
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCCCCcc
Q 002199 675 KSYFC----IGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 675 ~~y~~----lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
.++.. ++...+|+..+.+++...|....
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 256 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF 256 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhcccCCcHH
Confidence 88877 45667899999888876665543
No 66
>PLN02789 farnesyltranstransferase
Probab=99.61 E-value=1.1e-13 Score=153.94 Aligned_cols=228 Identities=15% Similarity=0.087 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLG-EIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG-~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
...++..+-.++...+++++|+..+.++|+++|.+..+|..++.++..+| .+++|+..+.+++..+|.+
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---------- 105 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---------- 105 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc----------
Confidence 45666666667788889999999999999999999999999999998887 5677777777777766654
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
...|..++..+...+... ..+++..+.+++.++|.+..+|..++.++..+|+|++|++.+.++|+.+|.+
T Consensus 106 ---------yqaW~~R~~~l~~l~~~~-~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 106 ---------YQIWHHRRWLAEKLGPDA-ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred ---------hHHhHHHHHHHHHcCchh-hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 333444444444333210 1134555555555555555555555555555555555555555555555544
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~ 729 (954)
.. +|..++.++..++.. +.
T Consensus 176 ~s-----------------AW~~R~~vl~~~~~l--------------------------------------------~~ 194 (320)
T PLN02789 176 NS-----------------AWNQRYFVITRSPLL--------------------------------------------GG 194 (320)
T ss_pred hh-----------------HHHHHHHHHHhcccc--------------------------------------------cc
Confidence 32 344444433222110 00
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002199 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHEM 805 (954)
Q Consensus 730 ~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~ 805 (954)
.....++++.+..++|.++ |.+..+|..++.++.. +++..+|+..|.+++..+|..+.|+-.|+.+|..
T Consensus 195 ---~~~~~e~el~y~~~aI~~~----P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 ---LEAMRDSELKYTIDAILAN----PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ---ccccHHHHHHHHHHHHHhC----CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 0012357888899999999 7888899999999988 5677889999999999999999999999999986
Q ss_pred h
Q 002199 806 I 806 (954)
Q Consensus 806 l 806 (954)
.
T Consensus 268 ~ 268 (320)
T PLN02789 268 G 268 (320)
T ss_pred h
Confidence 3
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.4e-12 Score=138.06 Aligned_cols=275 Identities=16% Similarity=0.168 Sum_probs=225.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH
Q 002199 496 SNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK 575 (954)
Q Consensus 496 ~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~ 575 (954)
+..|.-++-..+.++|+..|...++.+|...++++.||.+|...|+.+.|+..-+..+. .|+...
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~-------------- 103 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTF-------------- 103 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCch--------------
Confidence 34667777788999999999999999999999999999999999999999999877665 455322
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
.++......++..|+..|-++ .|...|.........-..++..|..+|....+|++||+..++...+.++...
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~D---RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~---- 176 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLD---RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR---- 176 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch----
Confidence 234566778888999999998 6777777777666666788999999999999999999999999988876543
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG 735 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g 735 (954)
......|.-|+..+....+.+.|+..+.++++.+|.... +-..+|.++...|
T Consensus 177 --------~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR--------------------Asi~lG~v~~~~g 228 (389)
T COG2956 177 --------VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR--------------------ASIILGRVELAKG 228 (389)
T ss_pred --------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee--------------------hhhhhhHHHHhcc
Confidence 112225677888888999999999999999999887754 3334899999999
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 736 RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
+|+.|++.++.+++.+| ...+.+...|..||..+|+.++.+..+.++++..+. +.+...++.+-....-.+.|..+
T Consensus 229 ~y~~AV~~~e~v~eQn~---~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 229 DYQKAVEALERVLEQNP---EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred chHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHH
Confidence 99999999999999985 456778888999999999999999999999998765 45556677777777777888888
Q ss_pred HHHHHHHhh
Q 002199 816 LQRLVSILE 824 (954)
Q Consensus 816 ~ekAL~l~p 824 (954)
+.+-|.-.|
T Consensus 305 l~~Ql~r~P 313 (389)
T COG2956 305 LTRQLRRKP 313 (389)
T ss_pred HHHHHhhCC
Confidence 777776644
No 68
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=9.4e-15 Score=154.26 Aligned_cols=108 Identities=33% Similarity=0.468 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
+....++.++..|+.+++.++|.+|+..|++||+++|.++ .+|.+||.+|.++|.|+.|+++|+.||.+|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA----------VyycNRAAAy~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA----------VYYCNRAAAYSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc----------hHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 4677899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|.+.++|.+||.+|+.+|++++|++.|+++|+++|++.
T Consensus 146 p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 146 PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 99999999999999999999999999999999999874
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.59 E-value=2.7e-13 Score=138.07 Aligned_cols=208 Identities=14% Similarity=0.061 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
....+.++..|+..|++. .|...++++|+++|.+..+|..+|.+|..+|+.+.|-+.|++++.+.|++..
T Consensus 35 a~arlqLal~YL~~gd~~---~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd------- 104 (250)
T COG3063 35 AKARLQLALGYLQQGDYA---QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD------- 104 (250)
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc-------
Confidence 334555555666666655 5555555666666666666666666666666666666666666666665543
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
++.+.|..++.+|++++|...|++++. +|..+. ....+.++|.+.+++|+++
T Consensus 105 ----------VLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~-----------------~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 105 ----------VLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGE-----------------PSDTLENLGLCALKAGQFD 156 (250)
T ss_pred ----------hhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCC-----------------cchhhhhhHHHHhhcCCch
Confidence 344555666666666666666666654 222222 1123445566666666666
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
.|.++|+++|.++ |..+.....++..++..|+|..|..++++...--+-....+.....+-..+|+-+.|.++=.+
T Consensus 157 ~A~~~l~raL~~d----p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 157 QAEEYLKRALELD----PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred hHHHHHHHHHHhC----cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6666666666665 444555555566666666666666666655555555555555555555566666665555555
Q ss_pred HHHHhhhhHH
Q 002199 819 LVSILENQSA 828 (954)
Q Consensus 819 AL~l~p~~~~ 828 (954)
+..++|...+
T Consensus 233 L~r~fP~s~e 242 (250)
T COG3063 233 LQRLFPYSEE 242 (250)
T ss_pred HHHhCCCcHH
Confidence 5555554443
No 70
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.9e-13 Score=148.63 Aligned_cols=278 Identities=16% Similarity=0.108 Sum_probs=219.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
+...|+.+..|..++-.++..++|++|+-.+++.++++|... ..+...+.|+..+++..+|.+.++
T Consensus 76 i~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~----------k~~~r~~~c~~a~~~~i~A~~~~~---- 141 (486)
T KOG0550|consen 76 IDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS----------KGQLREGQCHLALSDLIEAEEKLK---- 141 (486)
T ss_pred HHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc----------ccccchhhhhhhhHHHHHHHHHhh----
Confidence 345577799999999999999999999999999999999987 788899999999999888887776
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
+..++ ....|+..+++.+..... .+ .-...-+..+..+...++++ .
T Consensus 142 ----~~~~~-----------~~anal~~~~~~~~s~s~---~p-------------ac~~a~~lka~cl~~~~~~~---~ 187 (486)
T KOG0550|consen 142 ----SKQAY-----------KAANALPTLEKLAPSHSR---EP-------------ACFKAKLLKAECLAFLGDYD---E 187 (486)
T ss_pred ----hhhhh-----------HHhhhhhhhhcccccccC---Cc-------------hhhHHHHhhhhhhhhcccch---h
Confidence 11111 122233333332221110 00 00122334455666777777 6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
|+...-..+++++.+..+++.+|.+++...+.+.|+..|+++|.++|+....... ......+..|...|.-.++.
T Consensus 188 a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~-----~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 188 AQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA-----SMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred HHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH-----hhhHHHHHHHHhhhhhHhhc
Confidence 6777777888899999999999999999999999999999999999987543221 12223345677889999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
|+|.+|.++|..+|.++|.+.. ..+..|.+++.+..+.|+..+||...+.|+.++ +....
T Consensus 263 G~y~~A~E~Yteal~idP~n~~----------------~naklY~nra~v~~rLgrl~eaisdc~~Al~iD----~syik 322 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKK----------------TNAKLYGNRALVNIRLGRLREAISDCNEALKID----SSYIK 322 (486)
T ss_pred cchhHHHHHHHHhhcCCccccc----------------hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC----HHHHH
Confidence 9999999999999999998755 234567889999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
++..+|.||+.+++|++|+++|++|+++..+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999998765
No 71
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.5e-11 Score=139.70 Aligned_cols=271 Identities=14% Similarity=0.045 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..|..-+..+.+.+-++-|+..|..+|+..|.....|.+.+..-..-|..++-...+++++...|..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka------------- 583 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA------------- 583 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc-------------
Confidence 5566667777777888888888888888888888888888888788888888888888888877743
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
-..|+..+..+...|+.. .|...+.++++.+|++.++++..-.+.+...+++.|..++.++....|..
T Consensus 584 ------e~lwlM~ake~w~agdv~---~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe--- 651 (913)
T KOG0495|consen 584 ------EILWLMYAKEKWKAGDVP---AARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE--- 651 (913)
T ss_pred ------hhHHHHHHHHHHhcCCcH---HHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc---
Confidence 223566667777778777 78888889999999999999999999999999999999999998876643
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
+ .|+.-+.+...++..++|+.+++++++..|+... .|..+|+++.
T Consensus 652 -------------R--v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K--------------------l~lmlGQi~e 696 (913)
T KOG0495|consen 652 -------------R--VWMKSANLERYLDNVEEALRLLEEALKSFPDFHK--------------------LWLMLGQIEE 696 (913)
T ss_pred -------------h--hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH--------------------HHHHHhHHHH
Confidence 2 4667788888999999999999999999987765 4667999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
++++.+.|.+.|...++.. |....+|..++.+-.+.|+.-.|...++++.-.+|.+...|+....+-++.|+.++|
T Consensus 697 ~~~~ie~aR~aY~~G~k~c----P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKC----PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHhccccC----CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999 788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhH
Q 002199 813 ASDLQRLVSILENQS 827 (954)
Q Consensus 813 i~~~ekAL~l~p~~~ 827 (954)
...+-+||+-.|...
T Consensus 773 ~~lmakALQecp~sg 787 (913)
T KOG0495|consen 773 ELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHHHHHhCCccc
Confidence 999999999988764
No 72
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=4.5e-14 Score=149.21 Aligned_cols=124 Identities=29% Similarity=0.475 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
....+..+...|+-+++.++|.+|+..|.+||.++ |.++.+|+++|.+|.++|+|+.|+++|+.||.+||.+.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~----P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD----PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence 34456778889999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhh
Q 002199 797 SRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSME 857 (954)
Q Consensus 797 ~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e 857 (954)
.+||.+|..+|++++|++.|+++|+|+|++..+ +..|..|.+.+.+..
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~-------------K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDPDNESY-------------KSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCCCcHHH-------------HHHHHHHHHHhcCCC
Confidence 999999999999999999999999997766554 478888877776554
No 73
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.56 E-value=1.8e-11 Score=154.89 Aligned_cols=300 Identities=10% Similarity=0.037 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP-NFLK 527 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P-~~~~ 527 (954)
..|..+-..+.+.|++++|..+|.++++...... ...|..+..+|.+.|++++|++.|+...+... -+..
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD---------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD---------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 4455556667788888888888888877543321 26778888888888888888888888876543 2567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNS--AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l--~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
.|..+...|.+.|++++|++.|.+.... .|+ ...|..+...+...|+++ +|++.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD--------------------~vTYnsLI~a~~k~G~~d---eA~~lf 565 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD--------------------RVVFNALISACGQSGAVD---RAFDVL 565 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC--------------------HHHHHHHHHHHHHCCCHH---HHHHHH
Confidence 7888888888888888888888877653 232 223444455555666666 555555
Q ss_pred HHHHh----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 606 NEALS----ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 606 ~kaL~----~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
.++.. +.|+ ...|..+..+|.+.|++++|+++|+.+.+...... ...|..+...|.+.|
T Consensus 566 ~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~----------------~~tynsLI~ay~k~G 628 (1060)
T PLN03218 566 AEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT----------------PEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC----------------hHHHHHHHHHHHhcC
Confidence 55543 2333 44566666677777777777777776655432110 014555666677777
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
++++|+.+|.+.....-... ...|..+...|.+.|++++|+++|.++++... +.+..+
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD-------------------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~---~pd~~t 686 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPD-------------------EVFFSALVDVAGHAGDLDKAFEILQDARKQGI---KLGTVS 686 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC-------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCCHHH
Confidence 77777777776655321111 11233344445555555555555555544321 223344
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMAL--DENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~l--dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
|..+..+|.+.|++++|+..|++.... .| +...|..+...|.+.|++++|++.|+++.
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555555554332 22 23445555555555555555555555443
No 74
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.56 E-value=1.5e-11 Score=155.76 Aligned_cols=302 Identities=12% Similarity=0.059 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV--DPN 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--~P~ 524 (954)
....|..+-..|.+.|++++|..+|.++.+....-. ...|..+...|.+.|++++|++.|....+. .|+
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd---------vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN---------VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 345677788889999999999999999987643211 278999999999999999999999998764 454
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNS----AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l----~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
...|..+...|.+.|++++|.+.|.+.... .|+ ...+..+...+...|+++ +
T Consensus 542 -~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD--------------------~vTynaLI~ay~k~G~ld---e 597 (1060)
T PLN03218 542 -RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD--------------------HITVGALMKACANAGQVD---R 597 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc--------------------HHHHHHHHHHHHHCCCHH---H
Confidence 578999999999999999999999998763 343 233455556677888888 6
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 601 ALERINEALSIS-SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 601 AL~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
|++.|+.+.+.. +.+...|..+...|.+.|++++|+.+|++..+.. |+. ..|..+...|
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~------------------~TynsLI~a~ 659 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE------------------VFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------------------HHHHHHHHHH
Confidence 778888877765 4567788889999999999999999999887652 321 1566778889
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...|++++|+.+++++.+...... ...+..+...|.+.|++++|++.|+++..... ..
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd-------------------~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~---~P 717 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLG-------------------TVSYSSLMGACSNAKNWKKALELYEDIKSIKL---RP 717 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCC-------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC
Confidence 999999999999999876532221 12456677888899999999999988866432 22
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMAL--DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+...|..+...|.+.|++++|+..|++.... .| +...|..+...+.+.|++++|...+.++++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4567888888899999999999999987654 34 4556677778888999999999988888764
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=8.3e-12 Score=142.56 Aligned_cols=351 Identities=18% Similarity=0.122 Sum_probs=239.5
Q ss_pred hhcccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH
Q 002199 422 KVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT 501 (954)
Q Consensus 422 k~~~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~ 501 (954)
..+...+.-+.+..+.. .++..--.|..+|..+...++|++||.+|+.|+.+.|+|. .+|..++..
T Consensus 53 ~lg~~~ea~~~vr~glr----~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~----------qilrDlslL 118 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLR----NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL----------QILRDLSLL 118 (700)
T ss_pred cccchHHHHHHHHHHhc----cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH----------HHHHHHHHH
Confidence 44555555555554333 3344556899999999999999999999999999999997 999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 502 RISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 502 y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
..++++|+.....-.+.+++.|.....|+..|..+..+|++..|....+.........+ . -........
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~-s----------~~~~e~se~ 187 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP-S----------KEDYEHSEL 187 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C----------HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887766441000 0 011122334
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcch
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVT 661 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~ 661 (954)
.+.+...+...|.++ +|++.+..--..--+........|.+++.++++++|+..|...+..+|++....
T Consensus 188 ~Ly~n~i~~E~g~~q---~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy-------- 256 (700)
T KOG1156|consen 188 LLYQNQILIEAGSLQ---KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY-------- 256 (700)
T ss_pred HHHHHHHHHHcccHH---HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH--------
Confidence 455555666666666 444444332211123345566778999999999999999999999999886522
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCc-----------------------------------ch--
Q 002199 662 YSLARLWRWRLISKSYFCIGKLEVAL-DLLQKLEQVGSISD-----------------------------------RY-- 703 (954)
Q Consensus 662 ~~~~~l~a~~~Lg~~y~~lG~~eeAl-~~l~kal~l~p~~~-----------------------------------~~-- 703 (954)
..+-.++..-.+--+++ ..|...-+..|... ..
T Consensus 257 ---------~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 257 ---------EGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred ---------HHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 11111111011111111 22221111111000 00
Q ss_pred -------hhHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 704 -------GSEILESSMSLA-------------------GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 704 -------~~~~l~~~~~l~-------------------~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...+++.+...+ .....+..+..++..+...|+++.|..+++.||.-. |.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT----PT 403 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT----PT 403 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC----ch
Confidence 011222222111 112334566678899999999999999999999888 88
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
....|...|.++...|++++|..++..+-++|-.+.-.-..-|.-..+..+.++|.+..-+.-+
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 9999999999999999999999999999999855443333456666777888888777655443
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=6.4e-12 Score=147.47 Aligned_cols=322 Identities=16% Similarity=0.109 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
..+.+.-+..++...|++++|++++........+.. .++-.+|.+++.+|++++|...|...|..+|++.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----------~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKL----------AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 467778888999999999999999999888777765 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 527 KVYMRAAKCHLVLG-----EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 527 ~a~~~LA~iy~~lG-----~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
..|..+..++.... ..+.-...|+......|.....+........+ ..+-. .+
T Consensus 73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g-------~~F~~---------------~~ 130 (517)
T PF12569_consen 73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG-------DEFKE---------------RL 130 (517)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH-------HHHHH---------------HH
Confidence 99999988884433 46677788888777777532221111111000 00111 11
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
-.++...+.. .-|.+...+-.+|....+..-...++...+...................+...+|+++.+++.|...|
T Consensus 131 ~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 131 DEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 2222222221 22333333333333222222222222222111110000000001112345667899999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
++++|+.++++++...|.... .+...|.++-..|++.+|.++++.|-.++ ..+-.+
T Consensus 209 ~~~~Al~~Id~aI~htPt~~e--------------------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD----~~DRyi 264 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPTLVE--------------------LYMTKARILKHAGDLKEAAEAMDEARELD----LADRYI 264 (517)
T ss_pred CHHHHHHHHHHHHhcCCCcHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhCC----hhhHHH
Confidence 999999999999999887643 56678999999999999999999999999 666667
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMALD--ENY-------TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~ld--P~~-------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
-...+..+++.|+.++|+..+..-...+ |.. .+....-|.+|.+.|++..|+..|..+++++..-
T Consensus 265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7777888999999999999998876554 211 3334556999999999999999999999887643
No 77
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.54 E-value=4.6e-13 Score=144.73 Aligned_cols=361 Identities=15% Similarity=0.124 Sum_probs=241.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 497 NRAATRISLGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 497 ~lA~~y~~lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.-|.-+++.|++...+..|+.||+.-.++ ..+|..||.+|+.+++|++|+++-..-|.+... .
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-------------l 88 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-------------L 88 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-------------h
Confidence 34667789999999999999999998766 457889999999999999999987665543211 1
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHccCH-------------H
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS------SCSEKLLEMKADALYMLRKY-------------E 633 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~------P~~~~~~~~lA~~~~~lg~~-------------e 633 (954)
-.+...+...-+++..+-..|.|+ +|+.+..+-|.+. -....+++++|.+|...|+. +
T Consensus 89 gdklGEAKssgNLGNtlKv~G~fd---eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ 165 (639)
T KOG1130|consen 89 GDKLGEAKSSGNLGNTLKVKGAFD---EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNA 165 (639)
T ss_pred cchhccccccccccchhhhhcccc---hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence 112333455667778888888998 5555555544432 23467899999999988752 3
Q ss_pred HHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHH
Q 002199 634 EAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMS 713 (954)
Q Consensus 634 eAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~ 713 (954)
++...++.+++....+....... ....+.-.+|-.||..|+.+|+|+.|+...+.-+.+...
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~l----gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e-------------- 227 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKL----GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE-------------- 227 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH--------------
Confidence 44444555544444433322111 111222226778999999999999999998887665322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-
Q 002199 714 LAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN--IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE- 790 (954)
Q Consensus 714 l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~--~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP- 790 (954)
.......-.++.++|+++.-.|+++.|+++|..++.+. ..+....+...|.||..|.-+.++.+||.++.+-|.+..
T Consensus 228 fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 228 FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334578899999999999999999999987664 344567788889999999999999999999999887642
Q ss_pred -----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhh-----
Q 002199 791 -----NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDA----- 860 (954)
Q Consensus 791 -----~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~----- 860 (954)
....+++.||.+|-.+|..++|+.+.++.+++.-.- +...+...++..|...+..++......
T Consensus 308 L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev-------~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~ 380 (639)
T KOG1130|consen 308 LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV-------NDTSGELTARDNLSDLILELGQEDSLVDDTEL 380 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-------CCcchhhhhhhhhHHHHHHhCCCcccCCcHHH
Confidence 346789999999999999999999999998883221 112223444455555544443221100
Q ss_pred --ccCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCC
Q 002199 861 --KKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRS 900 (954)
Q Consensus 861 --k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~ 900 (954)
......---.+-||.+.....+....|. .++.-|||..
T Consensus 381 ~i~s~a~~~~as~ng~~~~~grR~sme~~~--l~k~tpdk~~ 420 (639)
T KOG1130|consen 381 IIDSSADPAPASINGVHPKLGRRESMETYF--LKKNTPDKPV 420 (639)
T ss_pred HhhccCCCCCccccccccchhhHHHHHHHH--HHhcCCCCcc
Confidence 0000000011225555555555555554 3466788843
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.54 E-value=8e-13 Score=155.80 Aligned_cols=319 Identities=13% Similarity=-0.013 Sum_probs=224.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVL 539 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~l 539 (954)
..++...|...|-+++++++... .+|..+|..|...-+...|..+|.+|.++|+.+..+.-..+..|...
T Consensus 470 ~rK~~~~al~ali~alrld~~~a----------paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~ 539 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLA----------PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE 539 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc
Confidence 34567888888888888888875 88888888888888888888899999999988888888888888888
Q ss_pred CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHH
Q 002199 540 GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLL 619 (954)
Q Consensus 540 G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~ 619 (954)
..+++|....-.+-+..|.. .....|..++..++..++.. .|+..++.++..+|.+...|
T Consensus 540 ~~we~a~~I~l~~~qka~a~-----------------~~k~nW~~rG~yyLea~n~h---~aV~~fQsALR~dPkD~n~W 599 (1238)
T KOG1127|consen 540 STWEEAFEICLRAAQKAPAF-----------------ACKENWVQRGPYYLEAHNLH---GAVCEFQSALRTDPKDYNLW 599 (1238)
T ss_pred ccHHHHHHHHHHHhhhchHH-----------------HHHhhhhhccccccCccchh---hHHHHHHHHhcCCchhHHHH
Confidence 88888888865555544421 11234555666777777777 78999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 620 EMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 620 ~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
..+|++|...|+|..|+..+.++..++|.+.- ..+..+.+....|+|.+|+..+...+.....
T Consensus 600 ~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y-----------------~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 600 LGLGEAYPESGRYSHALKVFTKASLLRPLSKY-----------------GRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHHHHHHhcCceehHHHhhhhhHhcCcHhHH-----------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987632 3344455555566666655555543322111
Q ss_pred Ccchhh-----------------------------------------------------------------------HHH
Q 002199 700 SDRYGS-----------------------------------------------------------------------EIL 708 (954)
Q Consensus 700 ~~~~~~-----------------------------------------------------------------------~~l 708 (954)
...... .++
T Consensus 663 e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il 742 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIIL 742 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHH
Confidence 000000 000
Q ss_pred HH-HHH-----------H--------HHHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 709 ES-SMS-----------L--------AGTVRALLHHKSAGNEAFK--------SGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 709 ~~-~~~-----------l--------~~~~~~~~~~~~lG~~~~~--------~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
.. ... + .........|+++|..|++ +.+...|+.++.++++++ .++..
T Consensus 743 ~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~----ann~~ 818 (1238)
T KOG1127|consen 743 SKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC----ANNEG 818 (1238)
T ss_pred HHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh----hccHH
Confidence 00 000 0 0000112234566665554 223346778888888877 66777
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
.|..||.+ -..|++.-|.-.|-+.+.+.|...-+|.++|.++....+++.|...|.++..++|.+...-
T Consensus 819 ~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 819 LWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred HHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 77777776 5557788888888888888888888888888888888888888888888888888775543
No 79
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.51 E-value=5.3e-12 Score=156.69 Aligned_cols=191 Identities=10% Similarity=-0.002 Sum_probs=132.6
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhhhhccCcch
Q 002199 584 NCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASVLADNGSVT 661 (954)
Q Consensus 584 ~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~~~~~~~~~ 661 (954)
.+...|.+.|+++ +|...|++... .+...|..+...|...|+.++|+++|++.+... |+.
T Consensus 365 ~Li~~y~k~G~~~---~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~------------ 426 (697)
T PLN03081 365 ALVDLYSKWGRME---DARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH------------ 426 (697)
T ss_pred HHHHHHHHCCCHH---HHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH------------
Confidence 3444555556666 45555554432 234456666666666666667766666655432 211
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 662 YSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAV 741 (954)
Q Consensus 662 ~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi 741 (954)
..+..+..++...|.+++|..+|+...+..+..+. ...|..+...|.+.|++++|+
T Consensus 427 ------~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~------------------~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 427 ------VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR------------------AMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred ------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC------------------ccchHhHHHHHHhcCCHHHHH
Confidence 13444555666666677776666666543222211 224556788899999999999
Q ss_pred HHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 742 EHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 742 ~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
+.++++- .. | +..+|..+..++...|+++.|...+++.+++.|++...|..++.+|...|++++|.+.++...+
T Consensus 483 ~~~~~~~-~~----p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 483 AMIRRAP-FK----P-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHCC-CC----C-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9987642 21 2 4567888999999999999999999999999999999999999999999999999999988765
Q ss_pred H
Q 002199 822 I 822 (954)
Q Consensus 822 l 822 (954)
.
T Consensus 557 ~ 557 (697)
T PLN03081 557 K 557 (697)
T ss_pred c
Confidence 4
No 80
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.50 E-value=2.2e-11 Score=151.24 Aligned_cols=329 Identities=10% Similarity=0.017 Sum_probs=237.8
Q ss_pred hhhcccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccc--c-------------
Q 002199 421 DKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETA--G------------- 485 (954)
Q Consensus 421 ~k~~~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~--~------------- 485 (954)
.+.+....+...+.+... .....|..+...|.+.|++++|+.+|.+.++..+..... .
T Consensus 169 ~k~g~~~~A~~lf~~m~~-------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE-------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred hcCCCHHHHHHHHhcCCC-------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 344444455555544221 134578889999999999999999999998754321100 0
Q ss_pred -----------cCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 486 -----------CCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 486 -----------~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
....+-..++..+..+|.+.|++++|...|+... +.+..+|..+...|.+.|++++|+..|++...
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 0000012345567778888999999998887653 45677888899999999999999999988765
Q ss_pred h--chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Q 002199 555 S--AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS-SCSEKLLEMKADALYMLRK 631 (954)
Q Consensus 555 l--~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~ 631 (954)
. .|+ ...+......+...+.++ +|.+.+..+++.. +.+..++..+...|.+.|+
T Consensus 319 ~g~~pd--------------------~~t~~~ll~a~~~~g~~~---~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 319 SGVSID--------------------QFTFSIMIRIFSRLALLE---HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred cCCCCC--------------------HHHHHHHHHHHHhccchH---HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC
Confidence 3 232 223455566667777777 5666666666654 5567788889999999999
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 002199 632 YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESS 711 (954)
Q Consensus 632 ~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~ 711 (954)
+++|..+|++..+.+ . ..|..+...|...|+.++|++.|++.....-...
T Consensus 376 ~~~A~~vf~~m~~~d---~-----------------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd---------- 425 (697)
T PLN03081 376 MEDARNVFDRMPRKN---L-----------------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN---------- 425 (697)
T ss_pred HHHHHHHHHhCCCCC---e-----------------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC----------
Confidence 999999999876521 1 1578888999999999999999999876432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 712 ~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
...+..+...+...|.+++|.++|+...+...- ..+...|..+..+|.+.|++++|++.+++. ...|
T Consensus 426 ---------~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~--~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p- 492 (697)
T PLN03081 426 ---------HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI--KPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP- 492 (697)
T ss_pred ---------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-
Confidence 123555667788999999999999998764311 123456777889999999999999998764 2334
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 792 YTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 792 ~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+...|..+...+...|+++.|...+++++++.|+
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 4567888999999999999999999999988554
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.50 E-value=2e-12 Score=138.30 Aligned_cols=191 Identities=13% Similarity=0.043 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..++.++.+|..++..|+|++|+..|++++...|.++ ....+++.+|.+|+.+|++++|+..|+++++..|+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 45677899999999999999999999999999999874 12357899999999999999999999999999998
Q ss_pred cHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 002199 525 FLK---VYMRAAKCHLVL--------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK 593 (954)
Q Consensus 525 ~~~---a~~~LA~iy~~l--------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g 593 (954)
++. +++.+|.++... |++++|+..|++++..+|.+................ .....+..+..++..|
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~--~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR--LAGKELYVARFYLKRG 180 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcC
Confidence 765 799999999987 889999999999999999875433222221111111 1223456778888999
Q ss_pred ChHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhh
Q 002199 594 TSEAASSALERINEALSISSC---SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAE 647 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~---~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p 647 (954)
++. +|+..+.+++...|+ .+.+++.+|.++..+|++++|+.+++.+....|
T Consensus 181 ~~~---~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 181 AYV---AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ChH---HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999 788899999988665 468999999999999999999998887765443
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=8.9e-11 Score=124.59 Aligned_cols=270 Identities=12% Similarity=0.078 Sum_probs=215.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF----- 525 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~----- 525 (954)
-+-.|..++-..+.++|++.|...++.+|... .++..+|..+...|..+.||..-+..+. .|+.
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~----------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr 106 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETF----------EAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQR 106 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhh----------HHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHH
Confidence 35678888999999999999999999999986 8999999999999999999997665554 5554
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
..+++.||.-|+..|-++.|...|....... .. ...+.-.+...|-..++|+ +||+..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-ef------------------a~~AlqqLl~IYQ~treW~---KAId~A 164 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EF------------------AEGALQQLLNIYQATREWE---KAIDVA 164 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hh------------------hHHHHHHHHHHHHHhhHHH---HHHHHH
Confidence 5688999999999999999999999876632 11 0112223344555666777 888888
Q ss_pred HHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 606 NEALSISSCS-----EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 606 ~kaL~~~P~~-----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
++..++.+.. +..|..+|..+....+.+.|+..+.++++.+|++.. +-..+|.++...
T Consensus 165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR-----------------Asi~lG~v~~~~ 227 (389)
T COG2956 165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR-----------------ASIILGRVELAK 227 (389)
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee-----------------hhhhhhHHHHhc
Confidence 8888887765 567788999999999999999999999999998855 556899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
|+|+.|++.++.+++.+|.... ..+-.+..+|...|+.++.+..+.++++..++. .
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~-------------------evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-----~ 283 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLS-------------------EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-----D 283 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHH-------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-----c
Confidence 9999999999999998875533 123336778999999999999999999987433 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTK 794 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~ 794 (954)
+...++..-....=.+.|..++.+-|...|+--.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 3344555556666678888888888998997443
No 83
>PLN03077 Protein ECB2; Provisional
Probab=99.48 E-value=5.2e-11 Score=151.33 Aligned_cols=323 Identities=12% Similarity=0.023 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCccccc------------------------CCchHHHHHHHHHHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSV--PLSETAGC------------------------CIKPLVLCYSNRAAT 501 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~--P~~~~~~~------------------------~~~~la~~~~~lA~~ 501 (954)
...|..+...|.+.|++++|+.+|.+..+.. |+...... ...+...++..+...
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3457777777888888888888887765433 44321000 000012345556666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 502 RISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 502 y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
|.+.|++++|++.|++..+ .+...|..+...|...|++++|+..|++.+..-+.+.........+...+........
T Consensus 434 y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 7777777777777766543 2345666777777777777777777777764321111111111111111111111111
Q ss_pred H----------------HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 582 Y----------------INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 582 ~----------------l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
. -.+...|.+.|+++ +|+..|... +.+...|..+...|...|+.++|+.+|++.++.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~---~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMN---YAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHH---HHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1 12234556677777 566666654 456777888888888899999999988887654
Q ss_pred --hhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 002199 646 --AEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLH 723 (954)
Q Consensus 646 --~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~ 723 (954)
.|+.. .+..+-..+...|.+++|..+|+......+..+. ...
T Consensus 584 g~~Pd~~------------------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~------------------~~~ 627 (857)
T PLN03077 584 GVNPDEV------------------TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN------------------LKH 627 (857)
T ss_pred CCCCCcc------------------cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc------------------hHH
Confidence 23321 3444556677888889998888887744333322 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
|..+...+.+.|++++|.+.+++. .+. | +..+|..+-.++...++.+.|....+++++++|++...|..++.+|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~----p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PIT----P-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 666889999999999999999875 233 3 3566777777788889999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHH
Q 002199 804 EMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l 822 (954)
...|+|++|.+..+...+.
T Consensus 702 a~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 702 ADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHCCChHHHHHHHHHHHHc
Confidence 9999999999988777554
No 84
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.7e-13 Score=147.71 Aligned_cols=158 Identities=21% Similarity=0.242 Sum_probs=129.4
Q ss_pred hhhccccccCCCCCcccCCCCCCC-----ccccCCCCCcccccccccchhhhhhhhcccHHHHHHHHhhcCCCChhhHHH
Q 002199 373 KLRKKSKKKVGNNSFVISPSPNDK-----VSFSHQASSSLCKTVNGEEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQET 447 (954)
Q Consensus 373 ~~~kk~~~k~~~~~~~~~P~~~~s-----~~Fsp~~~s~~~~~~~e~d~~~~~~k~~~~~~~~e~~~~~~~~~~~~~~~~ 447 (954)
..++++++..+..++.|||++.+. +.|.+. -...|.+...+..+.
T Consensus 158 i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~------------------------------~~~s~~~~~~e~l~~ 207 (397)
T KOG0543|consen 158 IDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELK------------------------------EDESWKMFAEERLEA 207 (397)
T ss_pred eCcccccCCCCCCCCCCCCCceEEEEEEEEeeecC------------------------------cccccccchHHHHHH
Confidence 456888888899999999999983 122211 112233344456777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC-----CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC-----IKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~-----~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
+...+..|+.||+.|+|..|+..|++|+...+........ ...+..++.|+|.||+++++|.+|+..|.++|+++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 8889999999999999999999999999987654322111 11257899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|++.+++|++|.+|..+|+|+.|+..|+++++++|.|.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999999999999999999999999873
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.48 E-value=3.7e-11 Score=136.62 Aligned_cols=274 Identities=14% Similarity=0.030 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..|..+|.++...|+++.|...+.++....|.. ....+..|.++...|++++|+..+++++...|.+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-------- 78 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL-------- 78 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------
Confidence 999999999999999999999999999887744 567888899999999999999999999999997621
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLE----QKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~----~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
.+.. +..++. .+....+.++ +.......|.....+..+|.++...|++++|+..+++++++
T Consensus 79 -----------a~~~-~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 79 -----------ALKL-HLGAFGLGDFSGMRDHVARV---LPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred -----------HHHH-hHHHHHhcccccCchhHHHH---HhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1110 112222 2333322233 33344567788888889999999999999999999999999
Q ss_pred hhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 002199 646 AEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHK 725 (954)
Q Consensus 646 ~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~ 725 (954)
.|.+. +.+..+|.+|+..|++++|+.++++++...|..+.. ....+.
T Consensus 144 ~p~~~-----------------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~----------------~~~~~~ 190 (355)
T cd05804 144 NPDDA-----------------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML----------------RGHNWW 190 (355)
T ss_pred CCCCc-----------------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch----------------hHHHHH
Confidence 99873 367889999999999999999999999987753221 122455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH--HHHHHHHHhcCHHHHHHH--H-HHHHHhCCC--CHHHHHH
Q 002199 726 SAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC--NRAAALQALGQIADAIAD--C-SLAMALDEN--YTKAVSR 798 (954)
Q Consensus 726 ~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~--~lA~~y~~lg~~eeAi~~--~-ekAL~ldP~--~~~al~~ 798 (954)
.+|.++...|++++|+..|++++...+.... ....+. .+...+...|....+..+ . .......|. .......
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 269 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTHIAPSAESDP-ALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLH 269 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccccCCCh-HHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 6899999999999999999999866532111 111101 222223333432222222 1 111111122 2233346
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
++.++...|+.++|...++.+....
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7888999999999999998887663
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.3e-10 Score=131.82 Aligned_cols=331 Identities=13% Similarity=0.034 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|+...+++..-.++.+.++|++|+.. |+..+.... .....+..|.|.++++..++|+.+++ -++
T Consensus 41 ~~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~-------~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~ 106 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLV-------INSFFFEKAYCEYRLNKLDEALKTLK---GLD 106 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhh-------cchhhHHHHHHHHHcccHHHHHHHHh---ccc
Confidence 3366777777777778888888887733 333332110 00223678888888888888888877 445
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
+....++...|++++++|+|++|+..|+..++.+.+... ......++..+ .++
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d--------------~~~r~nl~a~~-------------a~l 159 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD--------------EERRANLLAVA-------------AAL 159 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH--------------HHHHHHHHHHH-------------Hhh
Confidence 556667778888888888888888888887765433200 00000011111 111
Q ss_pred HH-HHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 603 ER-INEALSISSC-SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 603 ~~-l~kaL~~~P~-~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
.. ..+.+...|. +.+.+++.|.+++..|+|.+|++.+++++++............. ......-.+...++.++..+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE--eie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE--EIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh--hHHHHHHHHHHHHHHHHHHh
Confidence 11 2344444554 67899999999999999999999999997776654331111111 11111122567889999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSL-----------------------------AGTVRALLHHKSAGNEA 731 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l-----------------------------~~~~~~~~~~~~lG~~~ 731 (954)
|+.++|...|..+++..|.+.....-....+..+ ....+.-..+.+.+...
T Consensus 238 Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred cchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887764332111111111 01111112233444444
Q ss_pred HHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCHH
Q 002199 732 FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-TKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 732 ~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-~~al~~lA~ly~~lg~~e 810 (954)
+-.+.-+.+.+.. ..+ |...|....-...+.........+.+|+..+....+-+|.. ..+.+.++.+.+.+|+++
T Consensus 318 l~tnk~~q~r~~~---a~l-p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 318 LFTNKMDQVRELS---ASL-PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHhhhHHHHHHHH---HhC-CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 4444444333322 222 22223333322333333334447999999999999999988 778889999999999999
Q ss_pred HHHHHHHHHH
Q 002199 811 QAASDLQRLV 820 (954)
Q Consensus 811 eAi~~~ekAL 820 (954)
.|++.+...+
T Consensus 394 ~A~~il~~~~ 403 (652)
T KOG2376|consen 394 VALEILSLFL 403 (652)
T ss_pred HHHHHHHHHh
Confidence 9999999554
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.47 E-value=3.5e-12 Score=150.48 Aligned_cols=325 Identities=14% Similarity=0.064 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
....|..+|..|...+++.+|+..|+.|++.+|++. .+|..+|.+|...|+|..|++.|.+|..++|...
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~----------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY----------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhH----------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 445678899999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH----HHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE----AASSAL 602 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~----~a~eAL 602 (954)
.+.+..|.+...+|+|.+|+..+...+............+ ++.++..+..++..|-+. -+++++
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gL------------aE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGL------------AESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhH------------HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999999999998887543221111112 222233333333222222 222455
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH--HHHHHH--------HHhchhhhhhhhhhhhccCcchhh-HHHHHHH
Q 002199 603 ERINEALSIS-SCSEKLLEMKADALYMLRKYE--EAIQLC--------EHTLPVAEKNFASVLADNGSVTYS-LARLWRW 670 (954)
Q Consensus 603 ~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~~e--eAi~~~--------ekaL~l~p~~~~~~~~~~~~~~~~-~~~l~a~ 670 (954)
+.+.-++... -.+...|..++.+..-.-..+ --...+ +..+.+..++...+.......... ......|
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 5554444443 334444444444332221111 111111 111111001100000000000000 1113478
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 671 RLISKSYFC--------IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVE 742 (954)
Q Consensus 671 ~~Lg~~y~~--------lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~ 742 (954)
++||..|++ ..+-..|+.++.+++++..++.. .|..+|.+ -..|.+.-|.-
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~--------------------~WnaLGVl-sg~gnva~aQH 837 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEG--------------------LWNALGVL-SGIGNVACAQH 837 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHH--------------------HHHHHHHh-hccchhhhhhh
Confidence 899988875 23345799999999988765543 45556766 55688999999
Q ss_pred HHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 743 HYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 743 ~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
+|-+++... |.....|.|+|.++....+++-|...|.++..++|.+...|...+.+....|+.-++...+..
T Consensus 838 CfIks~~se----p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 838 CFIKSRFSE----PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhcc----ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999888 788889999999999999999999999999999999999999999999999988888887766
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.45 E-value=5.9e-12 Score=134.72 Aligned_cols=183 Identities=13% Similarity=-0.013 Sum_probs=150.3
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 611 ~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
.++..+..++.+|..++..|++++|+..+++++...|.+... ..+++.+|.+|+..|++++|+..|
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~~a~~~la~~~~~~~~~~~A~~~~ 93 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA--------------EQAQLDLAYAYYKSGDYAEAIAAA 93 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH--------------HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445678899999999999999999999999999999865320 116788999999999999999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhccCCchhh-H--
Q 002199 691 QKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS--------GRYTEAVEHYTVALSTNIESRPFA-A-- 759 (954)
Q Consensus 691 ~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~--------g~~eeAi~~y~kAL~l~~~~~p~~-a-- 759 (954)
+++++..|.++... .++..+|.+++.. +++++|+..|++++...|.+.... +
T Consensus 94 ~~~l~~~p~~~~~~-----------------~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 94 DRFIRLHPNHPDAD-----------------YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHHCcCCCchH-----------------HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 99999999876521 2345567777665 889999999999999986542111 0
Q ss_pred ----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 760 ----------ICFCNRAAALQALGQIADAIADCSLAMALDEN---YTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 760 ----------~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
.....+|.+|+..|++.+|+..|++++...|+ .+.+++.+|.++..+|++++|+.+++.+...+|
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11246789999999999999999999999765 468999999999999999999999888776644
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=4.5e-11 Score=127.46 Aligned_cols=333 Identities=16% Similarity=0.032 Sum_probs=226.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002199 457 QAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCH 536 (954)
Q Consensus 457 ~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy 536 (954)
.++...+|..|+.+++-.+..+.... ..+-..+|.|++.+|+|++|+..|+-+.+.+.-..+.+.+||.|+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE---------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEE---------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCK 101 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhh---------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHH
Confidence 35678899999999998887665543 267778899999999999999999999987777789999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhchhhhhhHHH-------------HHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 537 LVLGEIENAQHYYHKLLNSAAAVCLDRRI-------------TIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 537 ~~lG~~eeAl~~yekaL~l~P~~~~~~~~-------------~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
+.+|.|.+|...-.++-+ .+.-.+. +......++.. .+..+.+|...+..-.|+ +||+
T Consensus 102 FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQ---eAId 172 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQLSLASVHYMRMHYQ---EAID 172 (557)
T ss_pred HHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHHHhHHHHHHHHHHHH---HHHH
Confidence 999999999988776533 2221111 11111222221 356677788888777888 8999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC----------------------c--
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG----------------------S-- 659 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~----------------------~-- 659 (954)
.|.+.+..+|....+...+|.||+++.-|+-+.+.+.-.|+..|+.........+ .
T Consensus 173 vYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 173 VYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 9999999999999999999999999999999988888877777765332111000 0
Q ss_pred ------------c-----------hhhHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH--
Q 002199 660 ------------V-----------TYSLAR--LWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSM-- 712 (954)
Q Consensus 660 ------------~-----------~~~~~~--l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~-- 712 (954)
+ -+++.. ..+..+|...|+++++..+|+.+.+. ++|..+.... +....
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~Eyi--lKgvv~a 327 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYI--LKGVVFA 327 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHH--HHHHHHH
Confidence 0 000000 11445677778899999999887754 4566554331 00000
Q ss_pred HH------HHHHHHHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHH
Q 002199 713 SL------AGTVRALL-----------------HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAAL 769 (954)
Q Consensus 713 ~l------~~~~~~~~-----------------~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y 769 (954)
.+ ...+..+. ....++..++-..+|++-+.++...-..- .++-...+|+|.++
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF----~NdD~Fn~N~AQAk 403 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF----TNDDDFNLNLAQAK 403 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcchhhhHHHHHH
Confidence 00 00111111 11234556666777777777776655544 44556778888899
Q ss_pred HHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 770 QALGQIADAIADCSLAMALD-ENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 770 ~~lg~~eeAi~~~ekAL~ld-P~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
...|+|.+|.+.|-++-..+ .+.......+|.||.+.+..+-|...|
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999988887654333 233445566788888888888877665
No 90
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2e-13 Score=150.40 Aligned_cols=67 Identities=37% Similarity=0.555 Sum_probs=60.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCC-ChhHH---HHHHHHHHHCCCCCcccccccccCCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRS-EYDQE---QEIRKATKESPQNSHYGRSSDAYGYAC 932 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~-~~~~~---e~~~~~~~~l~~~~~~r~~yD~~g~~~ 932 (954)
..|||++|||+++|++.||||||||||++||||+++ ..+++ .+|.+||++|++ |++|++||+||...
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD-~eKRa~YD~fG~~~ 73 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSD-PEKRAAYDQFGHAG 73 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHhhccCccc
Confidence 579999999999999999999999999999999999 55544 567788999997 99999999999773
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.41 E-value=5.7e-12 Score=124.52 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
..+|.++...|++++|+.+|++++.++ |.+..+|+++|.++..+|++++|+..|++++.++|.++.+++.+|.++.
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQ----PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 347999999999999999999999999 8889999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhh
Q 002199 805 MIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLS 854 (954)
Q Consensus 805 ~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~ 854 (954)
.+|++++|+..|++++++. |+++..+..++.++..+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~-------------p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS-------------YADASWSEIRQNAQIMVD 140 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC-------------CCChHHHHHHHHHHHHHH
Confidence 9999999999999999994 555555566666665543
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=6e-10 Score=126.44 Aligned_cols=338 Identities=17% Similarity=0.073 Sum_probs=203.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
++++.++|+.+..++|+.+++ -+++.+. .++..+|.+++++|+|++|+..|+..++-+.++.+...+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~----------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDD----------KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccch----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 689999999999999999999 3334433 688899999999999999999999999988777666555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI 611 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~ 611 (954)
...+-... +... + .++..|....+ ..+.+++.+..++..|+|. +|++.++.++.+
T Consensus 150 ~nl~a~~a-----~l~~-~-~~q~v~~v~e~---------------syel~yN~Ac~~i~~gky~---qA~elL~kA~~~ 204 (652)
T KOG2376|consen 150 ANLLAVAA-----ALQV-Q-LLQSVPEVPED---------------SYELLYNTACILIENGKYN---QAIELLEKALRI 204 (652)
T ss_pred HHHHHHHH-----hhhH-H-HHHhccCCCcc---------------hHHHHHHHHHHHHhcccHH---HHHHHHHHHHHH
Confidence 43322111 1111 0 23333322111 2456899999999999999 666666666332
Q ss_pred C-------CCC--------HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC-cc--------hh-----
Q 002199 612 S-------SCS--------EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG-SV--------TY----- 662 (954)
Q Consensus 612 ~-------P~~--------~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~-~~--------~~----- 662 (954)
. ... ..+...++.++..+|+.++|..+|...|+.+|.+......... ++ ..
T Consensus 205 ~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~ 284 (652)
T KOG2376|consen 205 CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLK 284 (652)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHH
Confidence 1 111 3467889999999999999999999999988866432211100 00 00
Q ss_pred -------hHHHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHH-HHHHHHHH-------
Q 002199 663 -------SLARL-----------WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEIL-ESSMSLAG------- 716 (954)
Q Consensus 663 -------~~~~l-----------~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l-~~~~~l~~------- 716 (954)
.+... -.+.+.+.+.+..+.-+.+.+. +..+-+..+......+ ..+.....
T Consensus 285 ~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~---~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~ 361 (652)
T KOG2376|consen 285 SKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL---SASLPGMSPESLFPILLQEATKVREKKHKKAI 361 (652)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHhCCccCchHHHHHHHHHHHHHHHHHHhhhH
Confidence 00000 0222333333334433333322 2233333333221111 11110000
Q ss_pred ----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---CCchhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002199 717 ----------TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI---ESRPFAAICFCNRAAALQALGQIADAIADCS 783 (954)
Q Consensus 717 ----------~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~---~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~e 783 (954)
..........++.+.+.+|+++.|++.+...+.... ..-...+.+-..+-..|+..++-+-|...+.
T Consensus 362 e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~ 441 (652)
T KOG2376|consen 362 ELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLD 441 (652)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHH
Confidence 001133455678899999999999999993331110 0001233344444456666666555666666
Q ss_pred HHHHh-------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 784 LAMAL-------DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 784 kAL~l-------dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
.|+.. .+.....+...+....+.|+-++|...|+++++.+|++.+..
T Consensus 442 ~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 442 SAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred HHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 55532 233334455567777888999999999999999987776543
No 93
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-13 Score=146.32 Aligned_cols=67 Identities=39% Similarity=0.565 Sum_probs=60.6
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
...|||++|||+++|++.|||+|||||||+|||||++.. +.+.++..||++|++ |++|+.||+||..
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsD-pekRk~YD~~GEe 84 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSD-PEKRKHYDTYGEE 84 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHhhhHh
Confidence 368999999999999999999999999999999999755 445678889999997 9999999999966
No 94
>PLN03077 Protein ECB2; Provisional
Probab=99.39 E-value=4.3e-10 Score=142.97 Aligned_cols=317 Identities=13% Similarity=0.092 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV--DPN 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--~P~ 524 (954)
+...+..+...|.+.|++++|..+|++... | +. ..|..+...|.+.|++++|++.|++..+. .|+
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d~----------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET--K-DA----------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ce----------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 456788899999999999999999998643 3 32 67999999999999999999999987654 466
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh-hhHHHH----------HHHHHHHHHHH--hHHHHHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC-LDRRIT----------IEAADGLQKAQ--KVTEYINCSGKLLE 591 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~-~~~~~~----------~ea~~~l~~~~--~~~~~l~~a~~ll~ 591 (954)
.. .+..+-.++...|++++|.+.+..+++...... .....+ .++...+.... .+..|......+..
T Consensus 389 ~~-t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 389 EI-TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred ce-eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 53 444445577888889999888888877543210 000001 11111111110 01223333444555
Q ss_pred hcChHHHHHHHHHHHHHHhc-CCCCHHHHH----------------------------------HHHHHHHHccCHHHHH
Q 002199 592 QKTSEAASSALERINEALSI-SSCSEKLLE----------------------------------MKADALYMLRKYEEAI 636 (954)
Q Consensus 592 ~g~~~~a~eAL~~l~kaL~~-~P~~~~~~~----------------------------------~lA~~~~~lg~~eeAi 636 (954)
.++++ +|+..|.+.+.. .|+...+.. .+-..|.+.|++++|.
T Consensus 468 ~g~~~---eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 468 NNRCF---EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred CCCHH---HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 55555 455555555432 233222111 1123344444444444
Q ss_pred HHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcchhhHHHHHHHHH
Q 002199 637 QLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG--SISDRYGSEILESSMSL 714 (954)
Q Consensus 637 ~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~--p~~~~~~~~~l~~~~~l 714 (954)
..|+.. +.+ ...|..+...|...|+.++|+.+|++..+.. |+..
T Consensus 545 ~~f~~~----~~d-----------------~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~------------- 590 (857)
T PLN03077 545 NQFNSH----EKD-----------------VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV------------- 590 (857)
T ss_pred HHHHhc----CCC-----------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-------------
Confidence 444433 111 1145555666666666666666666655422 2211
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 002199 715 AGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTK 794 (954)
Q Consensus 715 ~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~ 794 (954)
.+..+-..+...|.+++|+++|+.......- ..+...|..+..+|.+.|++++|.+.+++. .+.|+ +.
T Consensus 591 --------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi--~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~ 658 (857)
T PLN03077 591 --------TFISLLCACSRSGMVTQGLEYFHSMEEKYSI--TPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PA 658 (857)
T ss_pred --------cHHHHHHHHhhcChHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HH
Confidence 1222334455667777777777766533211 113355666666777777777777766653 23443 44
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.|..+-..+...++.+.|....++++++.|++
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 55555556666667777766666676664443
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.38 E-value=3.3e-11 Score=147.05 Aligned_cols=244 Identities=13% Similarity=0.059 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.++..+...|...+++++|++.++.+++..|+...+|+.+|.++++.+++.+|... .++.+-+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------------ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------------ 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------------
Confidence 89999999999999999999999999999999999999999999999999988777 6666544321
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
++ .+++++...+...+.+..+++.+|.||-.+|++++|+..|+++|+++|.+..
T Consensus 98 ---------------------~~----~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~- 151 (906)
T PRK14720 98 ---------------------KW----AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE- 151 (906)
T ss_pred ---------------------ch----hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-
Confidence 11 2444444455555666667777777777777777777777777777776654
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
+...+|..|... ++++|+.++.+|+.. ++
T Consensus 152 ----------------aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------------------------~i 180 (906)
T PRK14720 152 ----------------IVKKLATSYEEE-DKEKAITYLKKAIYR----------------------------------FI 180 (906)
T ss_pred ----------------HHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------------------------HH
Confidence 556667777766 777777777777542 33
Q ss_pred HcCCHHHHHHHHHHHHhhccCCc----------------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESR----------------PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~----------------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
..++|..+.+++.+.+..+|.+- .....++.-+=.+|...++|++++..++.+|+++|.+..++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 44455555555555555553221 11122233333666677777777777777777777777777
Q ss_pred HHHHHHHHHh--------------------cCHHHHHHHHHHHHHHhhhhH
Q 002199 797 SRRAALHEMI--------------------RDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 797 ~~lA~ly~~l--------------------g~~eeAi~~~ekAL~l~p~~~ 827 (954)
..++.+|... ..+..|+..|++.+...+.+.
T Consensus 261 ~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 261 EELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred HHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCE
Confidence 7777777522 345667777777777766543
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=1e-11 Score=122.80 Aligned_cols=128 Identities=16% Similarity=0.075 Sum_probs=116.0
Q ss_pred HHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHH
Q 002199 636 IQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLA 715 (954)
Q Consensus 636 i~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~ 715 (954)
..+|++++.++|.+ ++.+|.++...|++++|+.+|++++.++|.+..
T Consensus 13 ~~~~~~al~~~p~~--------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~------------- 59 (144)
T PRK15359 13 EDILKQLLSVDPET--------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR------------- 59 (144)
T ss_pred HHHHHHHHHcCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-------------
Confidence 45788899998865 345799999999999999999999999997754
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Q 002199 716 GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 716 ~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~a 795 (954)
.+..+|.++...|++++|+..|++++.++ |.++.+++++|.++..+|++++|+..|++++.+.|+++..
T Consensus 60 -------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~----p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 60 -------AHIALAGTWMMLKEYTTAINFYGHALMLD----ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred -------HHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 67789999999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 002199 796 VSRRAALHEMIR 807 (954)
Q Consensus 796 l~~lA~ly~~lg 807 (954)
+..++.+...++
T Consensus 129 ~~~~~~~~~~l~ 140 (144)
T PRK15359 129 SEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHH
Confidence 999988876653
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=1.5e-09 Score=138.89 Aligned_cols=334 Identities=17% Similarity=0.066 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF---- 525 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---- 525 (954)
.....+..++..|++++|...+.++....+.... .........+...++.++...|++++|...++.+++..+..
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNI-ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS 489 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCc-ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence 4456788888999999999999998876443210 00011234566678999999999999999999999865542
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 526 -LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 526 -~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
..++..+|.++...|++++|+..+++++....... ...........++..++..|+++ .|...
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-------------~~~~~~~~~~~la~~~~~~G~~~---~A~~~ 553 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-------------VYHYALWSLLQQSEILFAQGFLQ---AAYET 553 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-------------chHHHHHHHHHHHHHHHHCCCHH---HHHHH
Confidence 24567889999999999999999999988643210 00111234566788888999999 55555
Q ss_pred HHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 605 INEALSIS--------SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 605 l~kaL~~~--------P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
+.+++.+. +....++..+|.++...|++++|...+.+++.+...... ......+..+|.+
T Consensus 554 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~la~~ 621 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP------------QQQLQCLAMLAKI 621 (903)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc------------hHHHHHHHHHHHH
Confidence 55555431 112345667899999999999999999999887542211 0112255678999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
+...|++++|...+.+++.+...... ... .. ..........+...|+.+.|..++............
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~-~~~-------~~-----~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRY-HSD-------WI-----ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccc-cHh-------Hh-----hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence 99999999999999999776433211 000 00 000001124445678999999988776543321111
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALD------ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld------P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.....+..+|.++..+|++++|+..+++++... .....++..+|.++...|++++|...+.+++++...
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 223346788999999999999999999998763 223567888999999999999999999999999644
No 98
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=8.6e-09 Score=114.04 Aligned_cols=335 Identities=10% Similarity=0.011 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
....|...|.--..++++..|...|++||..+-.+. .+|...+.+-|+......|...+.+|+.+-|.-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i----------tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd 141 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNI----------TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD 141 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc----------hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH
Confidence 456788888888889999999999999999998876 8999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhH---------HHHHHHHHHHHHHH--------------------
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDR---------RITIEAADGLQKAQ-------------------- 577 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~---------~~~~ea~~~l~~~~-------------------- 577 (954)
..|+..-..-..+|+...|.+.|++-+...|+...-. .....+...+.+..
T Consensus 142 qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 142 QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcC
Confidence 8888888888889999999999999988888532100 00000000000000
Q ss_pred ----------------------------------------hHHHHHHHHHHHHHh-----------------cChHHHHH
Q 002199 578 ----------------------------------------KVTEYINCSGKLLEQ-----------------KTSEAASS 600 (954)
Q Consensus 578 ----------------------------------------~~~~~l~~a~~ll~~-----------------g~~~~a~e 600 (954)
++...+..|...+-. |+....+.
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 000011111111100 11111112
Q ss_pred HHH-----HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 601 ALE-----RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 601 AL~-----~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
+|- .|+..+..+|.+-+.|+..-.+....|+.+.-.+.|++||.-.|.... ..+-+-++|+-+-.
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~e----------kr~W~RYIYLWinY 371 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASE----------KRYWRRYIYLWINY 371 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhH----------HHHHHHHHHHHHHH
Confidence 221 366677788999889988888888899999999999999988775321 11111122222333
Q ss_pred HH---HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002199 676 SY---FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 676 ~y---~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~ 752 (954)
++ +...+.+.+...|+.++.+.|...-. -+..|...|....++.+...|.+.+-.||...|
T Consensus 372 alyeEle~ed~ertr~vyq~~l~lIPHkkFt----------------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP 435 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDLIPHKKFT----------------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP 435 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcCcccch----------------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC
Confidence 32 36789999999999999998855332 223455567777777888888888888888775
Q ss_pred CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 753 ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 753 ~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.+. ++-..-.+-.++++++.....|++-|+..|.+..+|...|.+-..+|+.+.|...|+-|+..
T Consensus 436 K~K-----lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 436 KDK-----LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred chh-----HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 332 22333355667778888888888888888888888888888888888888888888777754
No 99
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.4e-11 Score=118.87 Aligned_cols=110 Identities=30% Similarity=0.464 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+.+..+...|+.+|..|+|.+|..-|..||.++|... .+....+|.|+|.|+++++.++.||.+|.+||+++|.
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 56688899999999999999999999999999999875 4667899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+.+++.++|.+|..+.+|++|++.|.++++++|..
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 99999999999999999999999999999999975
No 100
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.32 E-value=9.7e-13 Score=139.41 Aligned_cols=223 Identities=15% Similarity=0.087 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a 528 (954)
..+.++|+.||++|.|++||+||.++|.++|.++ ..+.|+|.+|+++.+|..|..+|..|+.++..+.++
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np----------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA 167 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP----------VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA 167 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc----------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 3478999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh-------HHHHH---------HHHHHHHHh
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK-------VTEYI---------NCSGKLLEQ 592 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~-------~~~~l---------~~a~~ll~~ 592 (954)
|.++|.+...+|...+|.+.++.+|++.|....-+.....+....++-.. +.+.- ..+..+...
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~ 247 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKK 247 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhh
Confidence 99999999999999999999999999999754333222222111110000 00000 011222233
Q ss_pred cChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHH
Q 002199 593 KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRL 672 (954)
Q Consensus 593 g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~ 672 (954)
+.+. .++..|..-+.....+..+... +..|....++++|+..+-+++...|..... ...
T Consensus 248 ~~~~---~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~-----------------~s~ 306 (536)
T KOG4648|consen 248 AMRS---VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPD-----------------TSG 306 (536)
T ss_pred hccc---cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcc-----------------cCC
Confidence 3333 3333333333333333333333 778888888999998888888777654221 112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 673 ISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 673 Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
.+.+-.-+|...++...++.++.+.|....
T Consensus 307 ~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 307 PPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred CchhHHHHhhhhhcCcchhheeeecccccc
Confidence 233444456677788888888888776654
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.32 E-value=1.5e-10 Score=141.52 Aligned_cols=267 Identities=9% Similarity=-0.067 Sum_probs=189.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
..-.|...++|..+...+...+++++|+...+.+++..|+.. .+|+.+|.++++.+++.+|... .++.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i----------~~yy~~G~l~~q~~~~~~~~lv--~~l~ 91 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI----------SALYISGILSLSRRPLNDSNLL--NLID 91 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce----------ehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence 344578899999999999999999999999999999999987 8999999999999998777665 5555
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
+-+.+. ++ .++++|-..+-..+.+ -.+++.+|..|-..|+++ +
T Consensus 92 ~~~~~~--------------~~-~~ve~~~~~i~~~~~~-------------------k~Al~~LA~~Ydk~g~~~---k 134 (906)
T PRK14720 92 SFSQNL--------------KW-AIVEHICDKILLYGEN-------------------KLALRTLAEAYAKLNENK---K 134 (906)
T ss_pred hccccc--------------ch-hHHHHHHHHHHhhhhh-------------------hHHHHHHHHHHHHcCChH---H
Confidence 544433 22 2222222222222211 113444444454555555 4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
|+..|+++++.+|.++.++.++|..|... ++++|+.++.+|+.. |+..
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------------------------~i~~ 182 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------------------------FIKK 182 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------------------------------HHhh
Confidence 55555555666677778888888888888 888888888877653 3445
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
.+|..+..++.+.+..+|.+......+++.+......-+.+..+.-+-..|...++|++++.++..+|.++ |.+..
T Consensus 183 kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~----~~n~~ 258 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD----NKNNK 258 (906)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC----Ccchh
Confidence 57788888888888888887776555555544443333445555666788889999999999999999999 66777
Q ss_pred HHHHHHHHHHHh--------------------cCHHHHHHHHHHHHHhCCCC
Q 002199 761 CFCNRAAALQAL--------------------GQIADAIADCSLAMALDENY 792 (954)
Q Consensus 761 ~~~~lA~~y~~l--------------------g~~eeAi~~~ekAL~ldP~~ 792 (954)
+...++.||... ..+..|+..|++-+-.++.+
T Consensus 259 a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 259 AREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred hHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCC
Confidence 888888888732 24677888888888777643
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.31 E-value=1.4e-10 Score=120.73 Aligned_cols=123 Identities=23% Similarity=0.172 Sum_probs=113.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
.++.++++..++++++.+|.+.. .|..+|.+|...|++++|+..|++++.+. |.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~--------------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~----P~~~ 107 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE--------------------QWALLGEYYLWRNDYDNALLAYRQALQLR----GENA 107 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCH
Confidence 56778999999999999998854 67889999999999999999999999999 8889
Q ss_pred HHHHHHHHHH-HHhcC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 760 ICFCNRAAAL-QALGQ--IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 760 ~~~~~lA~~y-~~lg~--~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.++..+|.++ ...|+ +++|+..++++++++|+++.+++.+|.+++.+|+|++|+.+|++++++.|.+
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999975 67787 5999999999999999999999999999999999999999999999997654
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=3.5e-08 Score=116.20 Aligned_cols=266 Identities=14% Similarity=0.056 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-----CHHHHHHHHHH
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-----RMREALEDCMM 517 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-----~~eeAl~~~~k 517 (954)
...+....+-.+|..+++.|++++|...|...|..+|++. ..|..+..|..... ..+.-++.|+.
T Consensus 33 ~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~----------~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~ 102 (517)
T PF12569_consen 33 QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY----------DYYRGLEEALGLQLQLSDEDVEKLLELYDE 102 (517)
T ss_pred hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHhhhcccccccHHHHHHHHHH
Confidence 4456677888999999999999999999999999999997 78888888874333 46667788888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhc-hhhh----------hhHHHHHHHHHHHHHH---------
Q 002199 518 AATVDPNFLKVYMRAAKCHLVLGEIENAQHY-YHKLLNSA-AAVC----------LDRRITIEAADGLQKA--------- 576 (954)
Q Consensus 518 ALel~P~~~~a~~~LA~iy~~lG~~eeAl~~-yekaL~l~-P~~~----------~~~~~~~ea~~~l~~~--------- 576 (954)
..+..|....+. ++...+..-..|...+.. +...|... |... .-...+..+...+...
T Consensus 103 l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~ 181 (517)
T PF12569_consen 103 LAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSN 181 (517)
T ss_pred HHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCC
Confidence 877777643221 222222222233333322 23333221 1100 0001111111111111
Q ss_pred ----------HhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 577 ----------QKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 577 ----------~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
..+..++.++..+...|+++ +|+.+++++|...|..+++|+.+|.+|-..|++.+|...++.+-.++
T Consensus 182 ~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~---~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 182 GDDEEKEPPSTLLWTLYFLAQHYDYLGDYE---KALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 01345677788888899999 89999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
..+-- .....+..+++.|+.++|...+....+-+-..... ....+-+.....
T Consensus 259 ~~DRy-----------------iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~-----------L~~mQc~Wf~~e 310 (517)
T PF12569_consen 259 LADRY-----------------INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN-----------LNDMQCMWFETE 310 (517)
T ss_pred hhhHH-----------------HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC-----------HHHHHHHHHHHH
Confidence 86621 34456788899999999999988875544211111 112233445566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
.|.+|.+.|++..|+..|..+++.
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 799999999999999999888765
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.25 E-value=1.6e-10 Score=113.32 Aligned_cols=102 Identities=12% Similarity=-0.009 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
++..+.++..|..++..|+|++|+..|+-+..++|.+. ..|+++|.|+..+|+|.+|+..|.+|+.++|+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~----------~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d 101 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF----------DYWFRLGECCQAQKHWGEAIYAYGRAAQIKID 101 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 77889999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
++.+++++|.|++.+|+.+.|+..|+.++...
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999976
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.25 E-value=5.2e-10 Score=136.01 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+++..+.......|.++.++.+||.+...+|++++|..+++.++++.|++.. ++..++.++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~-----------------a~~~~a~~L~~ 132 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE-----------------AFILMLRGVKR 132 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH-----------------HHHHHHHHHHH
Confidence 4455555555667889999999999999999999999999999999999866 77889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
++++++|+..+++++..+|++.. .+..+|.++...|+|++|+.+|++++..+ |..+
T Consensus 133 ~~~~eeA~~~~~~~l~~~p~~~~--------------------~~~~~a~~l~~~g~~~~A~~~y~~~~~~~----p~~~ 188 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGGSSSAR--------------------EILLEAKSWDEIGQSEQADACFERLSRQH----PEFE 188 (694)
T ss_pred hccHHHHHHHHHHHhhcCCCCHH--------------------HHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCcH
Confidence 99999999999999999998754 66778999999999999999999999966 7889
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.++..+|.++..+|+.++|...|++|++....-...|.++
T Consensus 189 ~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 189 NGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 9999999999999999999999999999877666654443
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=5.3e-09 Score=109.72 Aligned_cols=219 Identities=17% Similarity=0.133 Sum_probs=166.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHL 537 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~ 537 (954)
+.+..+|.+||+++.--.+..|.+- ..+..+|.||+...+|..|..+|++.-.+.|......+..|+.++
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~r----------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSR----------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 3677899999999999999999876 789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH---------------HHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 538 VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG---------------LQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 538 ~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~---------------l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
..+.+..|+......... | ....+....++... +.....+...++.+..+++.|+++ .|+
T Consensus 90 ~A~i~ADALrV~~~~~D~-~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyE---aAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-P-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYE---AAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC-H-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHH---HHH
Confidence 999999999988766543 1 11111111111110 000112455667778888899999 899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc-------c-----hhhHHHHHHH
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS-------V-----TYSLARLWRW 670 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~-------~-----~~~~~~l~a~ 670 (954)
+.|+.+++.....+.+-+.+|.++++.++|..|+.+..++++..-.+.+.....-.. + ....+.+.++
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988887655443332211110 0 1122333466
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 002199 671 RLISKSYFCIGKLEVALDLLQ 691 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~ 691 (954)
.+.+.++++.++++.|.+.+.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhh
Confidence 777889999999999887764
No 107
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=3.1e-08 Score=108.61 Aligned_cols=304 Identities=12% Similarity=0.017 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
...+......|..-+..|+|.+|.....++-+..+.-. .+|..-|.+--++|+++.|-.++.++-+..++
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~----------l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~ 150 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV----------LAYLLAAEAAQQRGDEDRANRYLAEAAELAGD 150 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH----------HHHHHHHHHHHhcccHHHHHHHHHHHhccCCC
Confidence 34556666778888888999999999988777665543 67777788888899999999999999888443
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 525 -FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 525 -~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
...+.+.++.++...|+++.|..-..++++..|.+... ..-....|+..|+|.....-+.
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~v-------------------lrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEV-------------------LRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHH-------------------HHHHHHHHHHhccHHHHHHHHH
Confidence 45678888999999999999999999999988865322 2222344556666664333333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH--HHHccCHHHHHH---HHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 604 RINEALSISSCSEKLLEMKADA--LYMLRKYEEAIQ---LCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~--~~~lg~~eeAi~---~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
.+.++-.+.+....-+...+.. +.+..+-..+.. .++..-..-..+.. .-..++.-+.
T Consensus 212 ~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~-----------------l~~~~a~~li 274 (400)
T COG3071 212 KLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE-----------------LVVAYAERLI 274 (400)
T ss_pred HHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh-----------------HHHHHHHHHH
Confidence 3333322332222222222221 111121111111 22221111111111 2234566788
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhh
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFA 758 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~ 758 (954)
..|++++|.+..+.+++..-+..- .. -.-...-+++..=++..++.+... |..
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~L-------------------~~----~~~~l~~~d~~~l~k~~e~~l~~h----~~~ 327 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPRL-------------------CR----LIPRLRPGDPEPLIKAAEKWLKQH----PED 327 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChhH-------------------HH----HHhhcCCCCchHHHHHHHHHHHhC----CCC
Confidence 999999999999999875432210 00 011235578888888899999888 667
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+.++..||.++++.+.|.+|..+|+.|+...|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 799999999999999999999999999999875 566788999999999999999999999955
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.24 E-value=2.8e-10 Score=138.35 Aligned_cols=131 Identities=11% Similarity=-0.030 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
++++||.+...+|.+++|+..++.++++.|++.. ++.+++.++.+.+++++|+..+++++
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~--------------------a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE--------------------AFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH--------------------HHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 7889999999999999999999999999998855 56678999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
..+ |.++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++..+|+.++|...|++++++.
T Consensus 148 ~~~----p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 148 SGG----SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred hcC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999 89999999999999999999999999999999999999999999999999999999999999999994
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.22 E-value=4.3e-10 Score=117.17 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=126.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
..-+-.|+..|+++......++.. +|... +...++.++++..++++++.+|++..+|+.
T Consensus 20 ~~~~~~Y~~~g~~~~v~~~~~~~~--~~~~~-------------------~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~ 78 (198)
T PRK10370 20 FLCVGSYLLSPKWQAVRAEYQRLA--DPLHQ-------------------FASQQTPEAQLQALQDKIRANPQNSEQWAL 78 (198)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHh--Ccccc-------------------ccCchhHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 344567888899888654442221 22211 112677789999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhcC--hHHHHHHHHHHHHH
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKL-LEQKT--SEAASSALERINEA 608 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~l-l~~g~--~~~a~eAL~~l~ka 608 (954)
+|.+|..+|++++|+..|++++.+.|++ ...+..++..+ ...|+ ++ +|+..++++
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------------------~~~~~~lA~aL~~~~g~~~~~---~A~~~l~~a 136 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGEN-------------------AELYAALATVLYYQAGQHMTP---QTREMIDKA 136 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhcCCCCcH---HHHHHHHHH
Confidence 9999999999999999999999999976 45567777765 45565 35 789999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 609 L~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
+..+|.++.++..+|.+++.+|+|++|+..|++++++.|.+.
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999999999999999998763
No 110
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=3.1e-08 Score=108.68 Aligned_cols=293 Identities=15% Similarity=0.069 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..+.+-|..-+.-|+|.+|.....++-+..+.-.-+|..-+.+-.++|+++.|-.++.++-+..++.
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~------------- 151 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD------------- 151 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-------------
Confidence 4555667777888999999999999999888888899999999999999999999999999985543
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
.....+..+..++.++++. .|...+.+++...|.++.++....++|+..|+|.+...++.+.-+..--+.
T Consensus 152 -----~l~v~ltrarlll~~~d~~---aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~-- 221 (400)
T COG3071 152 -----TLAVELTRARLLLNRRDYP---AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD-- 221 (400)
T ss_pred -----hHHHHHHHHHHHHhCCCch---hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh--
Confidence 2455778888999999999 677778899999999999999999999999999999988877655432111
Q ss_pred hhhccCcchhhHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARL--WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l--~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
..+.++ ++|..+ . ....+-..+.. +....+-.|.... .........+.-
T Consensus 222 ---------~e~~~le~~a~~gl--L-~q~~~~~~~~g-L~~~W~~~pr~lr----------------~~p~l~~~~a~~ 272 (400)
T COG3071 222 ---------EEAARLEQQAWEGL--L-QQARDDNGSEG-LKTWWKNQPRKLR----------------NDPELVVAYAER 272 (400)
T ss_pred ---------HHHHHHHHHHHHHH--H-HHHhccccchH-HHHHHHhccHHhh----------------cChhHHHHHHHH
Confidence 111111 122211 1 11111111111 1111111111100 011223346777
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
+...|++++|.+...++++..- ++.+... .-...-++...=++..++.+...|+++..++.||.++++.+.|.
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~-----D~~L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQW-----DPRLCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhcc-----ChhHHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 8899999999999999998752 2222222 22345688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 811 QAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
+|..+|+.+++.-|...++ ..++.+...+++.+.
T Consensus 346 kA~~~leaAl~~~~s~~~~--------------~~la~~~~~~g~~~~ 379 (400)
T COG3071 346 KASEALEAALKLRPSASDY--------------AELADALDQLGEPEE 379 (400)
T ss_pred HHHHHHHHHHhcCCChhhH--------------HHHHHHHHHcCChHH
Confidence 9999999999996554443 466666655554433
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=3.4e-10 Score=110.00 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=104.6
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
+.|++++.+.|.+. .....+|..++..|++++|+..|++++.++ |.+..++.++|.
T Consensus 4 ~~~~~~l~~~p~~~--------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~ 59 (135)
T TIGR02552 4 ATLKDLLGLDSEQL--------------------EQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAA 59 (135)
T ss_pred hhHHHHHcCChhhH--------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHH
Confidence 35677777766543 245668999999999999999999999998 778899999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
++..+|++++|+.+|++++.++|.++..++.+|.+|..+|++++|+..|++++++.|++..
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999999999999999999999999665543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=3.9e-08 Score=126.06 Aligned_cols=327 Identities=12% Similarity=-0.021 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGI-NSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN- 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL-~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~- 524 (954)
.+..+...|..+...|++..+...+..+- .....++ .+...++.+++..|++++|...+..+...-+.
T Consensus 373 ~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~----------~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~ 442 (903)
T PRK04841 373 LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENP----------RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDR 442 (903)
T ss_pred HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc----------chHHHHHHHHHHCCCHHHHHHHHHHHHHhcccc
Confidence 34445555666666677666555544320 0011112 34567788889999999999999988764321
Q ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH
Q 002199 525 --------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596 (954)
Q Consensus 525 --------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~ 596 (954)
...+...+|.++...|++++|...+++++...+.... .........++..+...|+++
T Consensus 443 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 443 NIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY--------------YSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred CcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--------------HHHHHHHHHHHHHHHHcCCHH
Confidence 2345566788999999999999999999985443200 001122345666777889998
Q ss_pred HHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 597 AASSALERINEALSISSC------SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~~P~------~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
+|+..+.+++..... ....+..+|.+++..|++++|...+++++.+...... .......+.+
T Consensus 509 ---~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~ 576 (903)
T PRK04841 509 ---RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL---------EQLPMHEFLL 576 (903)
T ss_pred ---HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc---------ccccHHHHHH
Confidence 566666666654221 1346678899999999999999999999987654211 0001112245
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|.+++..|++++|...+++++.+...... ...+..+..+|.++...|++++|...+.+++.+
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQP---------------QQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc---------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999876432211 011234556888999999999999999999876
Q ss_pred ccCCchh-h--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 751 NIESRPF-A--AICFCNRAAALQALGQIADAIADCSLAMALDENYT----KAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 751 ~~~~~p~-~--a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~----~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
....... . ..........+...|+.+.|...+.......+... ..+..++.++...|++++|+..|++++.+.
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 642 LGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred HhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4321110 1 11111123455567899999999877654332222 225678999999999999999999999885
Q ss_pred h
Q 002199 824 E 824 (954)
Q Consensus 824 p 824 (954)
.
T Consensus 722 ~ 722 (903)
T PRK04841 722 R 722 (903)
T ss_pred H
Confidence 3
No 113
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.19 E-value=2.5e-10 Score=129.77 Aligned_cols=101 Identities=28% Similarity=0.401 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.+...|..++..|+|++|+.+|++||+++|.+. .+|+++|.+|+.+|++++|+.++++++.++|.++.+|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----------ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 477889999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
+++|.+|+.+|+|++|+..|++++.++|.+.
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999863
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=5.3e-10 Score=108.68 Aligned_cols=107 Identities=23% Similarity=0.252 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|.....+..+|..++..|++++|+..|++++..+|.+. .++.++|.+++.+|++++|+..+++++.++
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS----------RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4466778899999999999999999999999999999987 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
|+++..++.+|.+|..+|++++|+..|+++++++|++
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999976
No 115
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3.9e-10 Score=112.18 Aligned_cols=112 Identities=34% Similarity=0.479 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc-hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR-PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~-p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
...+..+...|+.+|..|+|++|..-|..||.+.|... .....+|.|+|.++++++.++.||..|.++|+++|.+..|+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 44556677789999999999999999999999987443 35778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 797 SRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 797 ~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
.++|.+|.++..|++|+.+|.++++++|...+.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 999999999999999999999999998876543
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=1.1e-09 Score=126.97 Aligned_cols=224 Identities=16% Similarity=0.100 Sum_probs=187.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|........+|.++..+|-...|+..|++.-. |-..+..|...|+.. +|-
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------------------------w~~vi~CY~~lg~~~---kae 444 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------------------------WDPVILCYLLLGQHG---KAE 444 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------------------------HHHHHHHHHHhcccc---hHH
Confidence 34456677899999999999999999998544 333455566666666 666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
....+-++ .|.++.+|..+|++....--|++|.++.+..-.. +...+|...+..++
T Consensus 445 ei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-----------------------A~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 445 EINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-----------------------AQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-----------------------HHHhhccccccchh
Confidence 66667777 7778889999998888777777777766553322 33445666677899
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF 762 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~ 762 (954)
|+++..+++..++++|-.. ..|+.+|.++.+.++++.|.++|..++.++ |.+..+|
T Consensus 501 fs~~~~hle~sl~~nplq~--------------------~~wf~~G~~ALqlek~q~av~aF~rcvtL~----Pd~~eaW 556 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQL--------------------GTWFGLGCAALQLEKEQAAVKAFHRCVTLE----PDNAEAW 556 (777)
T ss_pred HHHHHHHHHHHhhcCccch--------------------hHHHhccHHHHHHhhhHHHHHHHHHHhhcC----CCchhhh
Confidence 9999999999999988553 378889999999999999999999999999 8999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 763 CNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 763 ~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+|++.+|..+++-.+|...+.+|++-+-.+...|.+.-.+....|.+++|++.|.+.+.+-.
T Consensus 557 nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 557 NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999988999999999999999999999999999998843
No 117
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.1e-10 Score=124.06 Aligned_cols=126 Identities=25% Similarity=0.354 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-----------chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-----------RPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-----------~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
+......|+.|++.|+|..|+..|++|+..-... ......+++|+|.||+++++|.+|+..|.++|+++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3455668999999999999999999998763210 12345689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 790 P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
|+|..++|++|.+++.+++|+.|+.+|++++++.|.+ ..+..+|..+.++.++.+..
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-------------ka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-------------KAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995554 44456777777666555443
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.15 E-value=9.1e-10 Score=107.99 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
..+..++.+|..++..|++++|+..|+.+..++ |.+...|++||.|+..+|+|.+||..|.+|+.++|+++.++++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 445677789999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
+|.+++.+|+.+.|++.|+.++.+-
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999995
No 119
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=8.1e-08 Score=103.02 Aligned_cols=340 Identities=14% Similarity=0.080 Sum_probs=207.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT----------- 520 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe----------- 520 (954)
.-+|.++|..|+|++|+..|+-+.+.+.-+. .++.++|.|++-+|.|.+|.....+|-.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~----------el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPA----------ELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCc----------ccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 3468899999999999999999888554443 8999999999999999999887766522
Q ss_pred ---cCC------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHH---------HHHHHH-H-
Q 002199 521 ---VDP------------NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI---------EAADGL-Q- 574 (954)
Q Consensus 521 ---l~P------------~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~---------ea~~~l-~- 574 (954)
++. +..+-.+.||.+++..-.|++|+..|.++|.-+|+...-.-.++ .....+ .
T Consensus 131 ahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 111 12344566788888888999999999999998886421111110 000000 0
Q ss_pred ---HHHh--HHHHHHHHHHHHH--hcChHHHH------------------------------HHHHHHHHHHhcCCCCHH
Q 002199 575 ---KAQK--VTEYINCSGKLLE--QKTSEAAS------------------------------SALERINEALSISSCSEK 617 (954)
Q Consensus 575 ---~~~~--~~~~l~~a~~ll~--~g~~~~a~------------------------------eAL~~l~kaL~~~P~~~~ 617 (954)
.... +...+ ++..+++ .|+..+.+ .|++.+--.+.+ -|+
T Consensus 211 YL~q~pdStiA~NL-kacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPE 286 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNL-KACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPE 286 (557)
T ss_pred HHHhCCCcHHHHHH-HHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChH
Confidence 0000 00000 0111110 11111000 222222222222 256
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE--- 694 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal--- 694 (954)
+..+++..|+.+++..+|+.+++..--..|. -|...|.++..+|+-....++++-+.
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~--------------------EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDPTTPY--------------------EYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCCCChH--------------------HHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 8888888999999999999988765444432 35567888887777544444443332
Q ss_pred hhCCCCcc-----hhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 002199 695 QVGSISDR-----YGSEILESSMSLAGTVRALLH---------------HKSAGNEAFKSGRYTEAVEHYTVALSTNIES 754 (954)
Q Consensus 695 ~l~p~~~~-----~~~~~l~~~~~l~~~~~~~~~---------------~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~ 754 (954)
++...... ..........-+......+.. ..++++++...|.|.+|.+.|-++-....
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i-- 424 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI-- 424 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh--
Confidence 22111100 011122222222223322222 24678889999999999999966543321
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT-KAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~-~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
.+.......+|.||...+..+-|-..+-+. -.|... ..+-.+|...++.+++-=|.+.|..+-.++|.-..|.
T Consensus 425 -kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 425 -KNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred -hhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 345556677899999999999998877542 123333 3344557888888998888899988888888766653
No 120
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.6e-07 Score=101.46 Aligned_cols=329 Identities=13% Similarity=0.117 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN--- 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~--- 524 (954)
...|...+..-++.++..-|..++.+|+.+.|.-. .+|+..-.+-..+|+...|.+.|++-++..|+
T Consensus 107 itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----------qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----------QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----------HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 34555555556666666666666666666666543 55555555555555555555555555554443
Q ss_pred -----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHH------HHHH
Q 002199 525 -----------------------------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRI------TIEA 569 (954)
Q Consensus 525 -----------------------------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~------~~ea 569 (954)
.+..|+..|..-...|...-|...|++|++.-.+....... ..+.
T Consensus 177 W~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 177 WLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 23456666777777788888888888777654332111100 0000
Q ss_pred HHHHHHHHh--------------------------------------------------------HHHHHHHHHHHHHhc
Q 002199 570 ADGLQKAQK--------------------------------------------------------VTEYINCSGKLLEQK 593 (954)
Q Consensus 570 ~~~l~~~~~--------------------------------------------------------~~~~l~~a~~ll~~g 593 (954)
.....++.- ...|+......-..|
T Consensus 257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence 000000000 233333333333444
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHH---HHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 594 TSEAASSALERINEALSISSCSEK-------LLEMKADAL---YMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~-------~~~~lA~~~---~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
+.+ ...+.|++|+..-|-... +|+.+-.++ +...+.+.+.++|+.+|++-|.. ...
T Consensus 337 ~~~---~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk-----------kFt 402 (677)
T KOG1915|consen 337 DKD---RIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK-----------KFT 402 (677)
T ss_pred CHH---HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc-----------cch
Confidence 555 667788999887664322 222222222 34678999999999999999865 234
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 664 LARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~ 743 (954)
++. .|++.|...+++-++..|...+-.|+-..|.+.. +...-.+-.+.++++....+
T Consensus 403 FaK--iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl---------------------Fk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 403 FAK--IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL---------------------FKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHH--HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH---------------------HHHHHHHHHHHhhHHHHHHH
Confidence 555 5667788999999999999999999988875532 11122334567899999999
Q ss_pred HHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHH
Q 002199 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL--HEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 744 y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l--y~~lg~~eeAi~~~ekAL~ 821 (954)
|++-|... |.+..+|...|.+-..+|+.+.|...|+.|+....-+..-++..+.+ -...|.++.|...|+++|+
T Consensus 460 YEkfle~~----Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 460 YEKFLEFS----PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHhcC----hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 99999998 88999999999999999999999999999997654454444444443 4677999999999999999
Q ss_pred HhhhhH
Q 002199 822 ILENQS 827 (954)
Q Consensus 822 l~p~~~ 827 (954)
..+.-.
T Consensus 536 rt~h~k 541 (677)
T KOG1915|consen 536 RTQHVK 541 (677)
T ss_pred hcccch
Confidence 855433
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=6.6e-09 Score=120.73 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=175.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|.....-..+|..++..|-...|+..|++. ..|-....||..+|+..+|.....+-++ .|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------------------emw~~vi~CY~~lg~~~kaeei~~q~le-k~ 454 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------------------EMWDPVILCYLLLGQHGKAEEINRQELE-KD 454 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------------------HHHHHHHHHHHHhcccchHHHHHHHHhc-CC
Confidence 3445556678889999999999999999874 5677788899999999999999999888 66
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
.++..|..||.+....--|++|.++.+.... .+....+...+..++|. ++..
T Consensus 455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~sa-------------------------rA~r~~~~~~~~~~~fs---~~~~ 506 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDPSLYEKAWELSNYISA-------------------------RAQRSLALLILSNKDFS---EADK 506 (777)
T ss_pred CcchhHHHhhhhccChHHHHHHHHHhhhhhH-------------------------HHHHhhccccccchhHH---HHHH
Confidence 6777888887777766666666665544322 22334444455567777 7888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
+++..++++|-....|+.+|.+.+++++++.|...|..++.+.|++.. +|.+++.+|+..++-
T Consensus 507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e-----------------aWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE-----------------AWNNLSTAYIRLKKK 569 (777)
T ss_pred HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh-----------------hhhhhhHHHHHHhhh
Confidence 899999999999999999999999999999999999999999998866 788999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
.+|...++++++.+-.+.. .|-+.-.+..+.|.+++|+..|.+.+.+.
T Consensus 570 ~ra~~~l~EAlKcn~~~w~--------------------iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 570 KRAFRKLKEALKCNYQHWQ--------------------IWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHHhhcCCCCCe--------------------eeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999888755444 33344556678889999999999888775
No 122
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.3e-11 Score=129.60 Aligned_cols=66 Identities=38% Similarity=0.529 Sum_probs=59.9
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
...||.+|+|.++|++.|||||||+||++|||||++.. +.+.+|..||++|++ |++|++||.||..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd-~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSD-PEKREIYDQYGEE 69 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC-HHHHHHHHhhhhh
Confidence 35699999999999999999999999999999999874 456778889999997 9999999999977
No 123
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.10 E-value=9.6e-10 Score=125.05 Aligned_cols=102 Identities=28% Similarity=0.398 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+...|..++..|+|++|+.+|++||.++ |.++.+|+++|.+|..+|++++|+.++++++.++|.++.+|+.+|.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4457899999999999999999999999 778899999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 804 EMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
+.+|+|++|+.+|++++++.|++...
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999997665543
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=5e-08 Score=101.12 Aligned_cols=174 Identities=18% Similarity=0.082 Sum_probs=120.0
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHH
Q 002199 586 SGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLA 665 (954)
Q Consensus 586 a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~ 665 (954)
....+..++.+ -|..++.+.....|.+..+....|..+...|.|++|+++|+..|+-+|.+..
T Consensus 59 ~IAAld~~~~~---lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v-------------- 121 (289)
T KOG3060|consen 59 FIAALDTGRDD---LAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV-------------- 121 (289)
T ss_pred HHHHHHhcchH---HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH--------------
Confidence 33444555666 3444444544455777777778888888888888888888888887777644
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 666 RLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYT 745 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~ 745 (954)
++-..-.+...+|+.-+|++.+...++..+.+. .+|..++.+|+..++|++|.-+|+
T Consensus 122 ---~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~--------------------EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 122 ---IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ--------------------EAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred ---HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH--------------------HHHHHHHHHHHhHhHHHHHHHHHH
Confidence 233333445567777777777777777665553 366667788888888888888888
Q ss_pred HHHhhccCCchhhHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 746 VALSTNIESRPFAAICFCNRAAALQALG---QIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 746 kAL~l~~~~~p~~a~~~~~lA~~y~~lg---~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+.+-++ |.++.++..+|.+++-+| ++.-|..+|.++++++|.+..+++.+-.+.
T Consensus 179 E~ll~~----P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 179 ELLLIQ----PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 887777 777777777777777665 567777788888888877777776654443
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=7.7e-09 Score=108.08 Aligned_cols=177 Identities=17% Similarity=0.126 Sum_probs=157.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
++..+-+....+|.+..+ ..++..+...|+-+.+..+..+++...|.+.. .+..+|...++.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~-----------------ll~~~gk~~~~~ 113 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE-----------------LLAAQGKNQIRN 113 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH-----------------HHHHHHHHHHHh
Confidence 455566677789999999 99999999999999999999998888777643 223379999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
|++.+|+..++++..+.|.+.. .|..+|.+|.+.|++++|...|.+++++. +..+.
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~--------------------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~----~~~p~ 169 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWE--------------------AWNLLGAALDQLGRFDEARRAYRQALELA----PNEPS 169 (257)
T ss_pred cchHHHHHHHHHHhccCCCChh--------------------hhhHHHHHHHHccChhHHHHHHHHHHHhc----cCCch
Confidence 9999999999999999998866 56679999999999999999999999999 88899
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
++.|+|..|+-.|+++.|..++..+...-+.+..+..+++.+....|++++|...-.+-
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999999999999999999999988889999999999999999999998765443
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=1.8e-08 Score=104.26 Aligned_cols=177 Identities=18% Similarity=0.085 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..++.-..+-+...+.+..|+.+.|..|+++.-..-|+.. .+....|..+...|+|++|+++|+..|+-+
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~----------RV~~lkam~lEa~~~~~~A~e~y~~lL~dd 116 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK----------RVGKLKAMLLEATGNYKEAIEYYESLLEDD 116 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh----------hHHHHHHHHHHHhhchhhHHHHHHHHhccC
Confidence 4456666777788888999999999999999998889987 788889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|.+..++-+.--+...+|+.-+|++.+...++..+.+ .+.|..++..|+..++|+ +|.
T Consensus 117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------------------~EAW~eLaeiY~~~~~f~---kA~ 174 (289)
T KOG3060|consen 117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------------------QEAWHELAEIYLSEGDFE---KAA 174 (289)
T ss_pred cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------------------HHHHHHHHHHHHhHhHHH---HHH
Confidence 9999999999999999999999999999999988765 678999999999999999 899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHhchhhhhhhh
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLR---KYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg---~~eeAi~~~ekaL~l~p~~~~ 651 (954)
-++++.+-+.|.++.++..+|++++-+| +++-|..+|.++++++|.+..
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 9999999999999999999999999887 677899999999999997643
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=2.8e-08 Score=106.86 Aligned_cols=181 Identities=11% Similarity=0.028 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF- 525 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~- 525 (954)
.++.++..|..++..|+|++|+..|++++...|..+ ....+.+.+|.+|+++++|++|+..+++.++++|++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 456688999999999999999999999999999875 234567899999999999999999999999999876
Q ss_pred --HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH--HhHHHHH
Q 002199 526 --LKVYMRAAKCHLVLGE------------------IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKA--QKVTEYI 583 (954)
Q Consensus 526 --~~a~~~LA~iy~~lG~------------------~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~--~~~~~~l 583 (954)
..+++.+|.++..+++ ..+|+..|++.++..|+..... ++...+..+ .....-+
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~----~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT----DATKRLVFLKDRLAKYEL 179 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH----HHHHHHHHHHHHHHHHHH
Confidence 6789999998766641 3578899999999999764432 222222222 1234455
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHH
Q 002199 584 NCSGKLLEQKTSEAASSALERINEALSISSCS---EKLLEMKADALYMLRKYEEAIQLCEH 641 (954)
Q Consensus 584 ~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~---~~~~~~lA~~~~~lg~~eeAi~~~ek 641 (954)
..+.-|+..+.|. .|+..++.++...|+. .+++..++.+|..+|..++|......
T Consensus 180 ~ia~~Y~~~~~y~---AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYV---AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchH---HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7778888999998 6888888888877754 78899999999999999999876654
No 128
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=5.9e-11 Score=134.89 Aligned_cols=65 Identities=34% Similarity=0.461 Sum_probs=58.4
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++|+..|||+|||+||++||||++.. . ..+.+|.+||++|++ +.+|+.||+||..
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd-~~kR~~YD~~G~~ 71 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSD-EKKRALYDRYGKK 71 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhcc-HHHHHHHHHhccc
Confidence 689999999999999999999999999999999873 2 445678899999997 9999999999964
No 129
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=7.3e-10 Score=121.98 Aligned_cols=253 Identities=17% Similarity=0.176 Sum_probs=170.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh
Q 002199 500 ATRISLGRMREALEDCMMAATVDP-NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK 578 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P-~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~ 578 (954)
.-++.+|+|..++..+. ....+| ......+.+.++|+.+|+++..+..+...- .|..
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l------------------- 66 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL------------------- 66 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC-------------------
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH-------------------
Confidence 34567899999998777 334444 346677888999999999987765553311 2221
Q ss_pred HHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 579 VTEYINCSGKLLEQ-KTSEAASSALERINEALSIS--SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 579 ~~~~l~~a~~ll~~-g~~~~a~eAL~~l~kaL~~~--P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
.....++ .++.. .+.+ .++..+...+... +.++.+....|.++...|++++|+..+.+.-.+ +
T Consensus 67 -~av~~la-~y~~~~~~~e---~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~l-----E---- 132 (290)
T PF04733_consen 67 -QAVRLLA-EYLSSPSDKE---SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSL-----E---- 132 (290)
T ss_dssp -HHHHHHH-HHHCTSTTHH---CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCH-----H----
T ss_pred -HHHHHHH-HHHhCccchH---HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcc-----c----
Confidence 1111111 22221 1222 4555555544332 235667777888999999999999988765211 1
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG 735 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g 735 (954)
....+-.+|+.+++++.|.+.++.+.+.+.+.. ......+++.+..|
T Consensus 133 -------------~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--------------------l~qLa~awv~l~~g 179 (290)
T PF04733_consen 133 -------------LLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--------------------LTQLAEAWVNLATG 179 (290)
T ss_dssp -------------HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--------------------HHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--------------------HHHHHHHHHHHHhC
Confidence 234567789999999999999999877654321 11112333444444
Q ss_pred --CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH-HHH
Q 002199 736 --RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDY-TQA 812 (954)
Q Consensus 736 --~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~-eeA 812 (954)
.+.+|.-.|++..... +..+.++..+|.|++.+|+|++|...+.+++..+|+++.++.+++.+...+|+. +.+
T Consensus 180 ~e~~~~A~y~f~El~~~~----~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKF----GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred chhHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 6999999999977665 567788999999999999999999999999999999999999999999999998 566
Q ss_pred HHHHHHHHHHhhh
Q 002199 813 ASDLQRLVSILEN 825 (954)
Q Consensus 813 i~~~ekAL~l~p~ 825 (954)
.+++.++....|+
T Consensus 256 ~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 256 ERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCC
Confidence 6777777777443
No 130
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.08 E-value=5.2e-08 Score=104.88 Aligned_cols=334 Identities=14% Similarity=0.092 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cC
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT----VD 522 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe----l~ 522 (954)
.+....+.|..+|...++.+|+..+.+.|....+.. .....|..+..++..+|.|++++...--.+. .+
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~-------~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ 77 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLM-------GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE 77 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHH-------HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445667889999999999999999999998654422 2346777788899999999998876544333 32
Q ss_pred CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 523 PN--FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 523 P~--~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
.. ...++.++++.+..+.++.+++.+-...+.+-........ -...+..+..++..+.++ +
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~--------------gq~~l~~~~Ahlgls~fq---~ 140 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG--------------GQVSLSMGNAHLGLSVFQ---K 140 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc--------------chhhhhHHHHhhhHHHHH---H
Confidence 22 2578999999999999999999998888876432210000 122344566666666666 7
Q ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 002199 601 ALERINEALSISSCS------EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674 (954)
Q Consensus 601 AL~~l~kaL~~~P~~------~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg 674 (954)
+++.|+.++.+.... ..++..+|.++..+.++++|+-+..+++++...... ..+ ..-.+..+++.++
T Consensus 141 ~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l------~d~-~~kyr~~~lyhma 213 (518)
T KOG1941|consen 141 ALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL------KDW-SLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc------Cch-hHHHHHHHHHHHH
Confidence 888888888764322 457888999999999999999999999887653210 001 1122334678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--
Q 002199 675 KSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI-- 752 (954)
Q Consensus 675 ~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-- 752 (954)
..|..+|.+-.|.++.+++.++.-.. ......+..+.-+|++|...|+.+.|..-|++|.....
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~--------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQH--------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHh--------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 99999999999999999998763222 22233344566789999999999999999999987642
Q ss_pred CCchhhHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 753 ESRPFAAICFCNRAAALQALGQIAD-----AIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 753 ~~~p~~a~~~~~lA~~y~~lg~~ee-----Ai~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
.+.-....++...|.++....-..+ |++.-++++++... ..+.+..++.+|..+|.-++=...+.++-+
T Consensus 280 gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 280 GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 2223445566667777766554444 88888888877543 246788899999999998888888887776
Q ss_pred Hhhh
Q 002199 822 ILEN 825 (954)
Q Consensus 822 l~p~ 825 (954)
...+
T Consensus 360 ~~~e 363 (518)
T KOG1941|consen 360 CVEE 363 (518)
T ss_pred HHHH
Confidence 6543
No 131
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.07 E-value=9.3e-11 Score=134.59 Aligned_cols=66 Identities=35% Similarity=0.522 Sum_probs=61.9
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||+||++|||||+.+...+.++.+||++|++ +.+|+.||.||..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD-~~kR~~YD~~G~~ 92 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSD-PEKRKIYDEYGEE 92 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhcc-HHHHHHHhhhcch
Confidence 56999999999999999999999999999999999877888999999999997 9999999999864
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.05 E-value=3.1e-08 Score=103.76 Aligned_cols=177 Identities=15% Similarity=0.074 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
..++.++..|..++..|+|.+|+..|++++...|..+ ....+.+.+|.+++..|+|.+|+..+++.+...|+.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3567899999999999999999999999999999865 335889999999999999999999999999999876
Q ss_pred ---HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH--HhHHHHHHHHHHH
Q 002199 526 ---LKVYMRAAKCHLVLG-----------EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKA--QKVTEYINCSGKL 589 (954)
Q Consensus 526 ---~~a~~~LA~iy~~lG-----------~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~--~~~~~~l~~a~~l 589 (954)
..+++.+|.+++.+. ...+|+..|+..+...|+...... +...+..+ .....-+..|..+
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~----A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE----AKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999987654 345899999999999998754332 22222222 2244556678888
Q ss_pred HHhcChHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHH
Q 002199 590 LEQKTSEAASSALERINEALSISSCS---EKLLEMKADALYMLRKYEEAI 636 (954)
Q Consensus 590 l~~g~~~~a~eAL~~l~kaL~~~P~~---~~~~~~lA~~~~~lg~~eeAi 636 (954)
+..+.|. .|+..++.++...|+. ..++..++.+|..+|..+.|.
T Consensus 152 ~~~~~y~---aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYK---AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HH---HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHH---HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999 7899999999999887 567888999999999988543
No 133
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=1.9e-10 Score=130.86 Aligned_cols=66 Identities=32% Similarity=0.492 Sum_probs=58.8
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..|||+|||+||++||||++.... .+.++.+||++|++ +++|+.||+||..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD-~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLD-KDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcC-HHHhhhhhhccch
Confidence 369999999999999999999999999999999986544 34578889999997 9999999999864
No 134
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=2e-10 Score=131.58 Aligned_cols=65 Identities=31% Similarity=0.407 Sum_probs=58.1
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
..|||++|||.++++..|||+|||+||++||||++... ..+.+|.+||++|++ +++|+.||+||.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD-~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSD-PAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcc-hhhhhHHHHhhh
Confidence 46999999999999999999999999999999998632 445678899999997 999999999974
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.00 E-value=2.6e-08 Score=104.17 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchh
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~ 662 (954)
+..+..+...|+-+ .++.+..+++...|.+..++..+|..++..|+|.+|+..++++..+.|++..
T Consensus 70 ~~~a~a~~~~G~a~---~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~----------- 135 (257)
T COG5010 70 AKLATALYLRGDAD---SSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE----------- 135 (257)
T ss_pred HHHHHHHHhccccc---chHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh-----------
Confidence 56667777777766 6777778888889999999999999999999999999999999999999866
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 663 SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVE 742 (954)
Q Consensus 663 ~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~ 742 (954)
.|..+|.+|.+.|++++|...|.+++++.|..+. .+.++|..|+-.|+++.|..
T Consensus 136 ------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~--------------------~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 136 ------AWNLLGAALDQLGRFDEARRAYRQALELAPNEPS--------------------IANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred ------hhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--------------------hhhhHHHHHHHcCCHHHHHH
Confidence 7889999999999999999999999999998876 56789999999999999999
Q ss_pred HHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 743 HYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 743 ~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
++..+.... +.+..+..|++.+.-.+|++.+|.....+
T Consensus 190 lll~a~l~~----~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 190 LLLPAYLSP----AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhCC----CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999998775 66888999999999999999999887665
No 136
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=1.2e-08 Score=112.43 Aligned_cols=261 Identities=16% Similarity=0.095 Sum_probs=176.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
..+|-.|+|..++..++ .....+.. .......+..+|+.+|++...+..+...- .| ...+...++..
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~---------~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~-~l~av~~la~y 75 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPEN---------KLERDFYQYRSYIALGQYDSVLSEIKKSS--SP-ELQAVRLLAEY 75 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHH---------HHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SC-CCHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchh---------HHHHHHHHHHHHHHcCChhHHHHHhccCC--Ch-hHHHHHHHHHH
Confidence 45678899999998777 22333322 24677888999999999998776654422 33 34566666766
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
+....+.+.++..++..+...... . .....+..|..++..|+++ +|+..+.+. .+
T Consensus 76 ~~~~~~~e~~l~~l~~~~~~~~~~-~----------------~~~~~~~~A~i~~~~~~~~---~AL~~l~~~-----~~ 130 (290)
T PF04733_consen 76 LSSPSDKESALEELKELLADQAGE-S----------------NEIVQLLAATILFHEGDYE---EALKLLHKG-----GS 130 (290)
T ss_dssp HCTSTTHHCHHHHHHHCCCTS----C----------------HHHHHHHHHHHHCCCCHHH---HHHCCCTTT-----TC
T ss_pred HhCccchHHHHHHHHHHHHhcccc-c----------------cHHHHHHHHHHHHHcCCHH---HHHHHHHcc-----Cc
Confidence 655556666666665544321110 0 0112334455566677777 555544332 56
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG--KLEVALDLLQKL 693 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG--~~eeAl~~l~ka 693 (954)
.+....+..+|+.+++++.|...++.+.+.+.+... ..+..+.+.+..| .+.+|.-.|++.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l-----------------~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSIL-----------------TQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHH-----------------HHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHH-----------------HHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 788888899999999999999999998887765421 2223344444555 699999999997
Q ss_pred HhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc
Q 002199 694 EQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG 773 (954)
Q Consensus 694 l~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg 773 (954)
....+..+ ..+..++.+++.+|+|++|...+.+|+..+ |.++.++.|++.+...+|
T Consensus 194 ~~~~~~t~--------------------~~lng~A~~~l~~~~~~eAe~~L~~al~~~----~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 194 SDKFGSTP--------------------KLLNGLAVCHLQLGHYEEAEELLEEALEKD----PNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HCCS--SH--------------------HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHTT
T ss_pred HhccCCCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhC
Confidence 66544332 245668999999999999999999999888 788999999999999999
Q ss_pred CH-HHHHHHHHHHHHhCCCCHHH
Q 002199 774 QI-ADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 774 ~~-eeAi~~~ekAL~ldP~~~~a 795 (954)
+. +.+.+++.+....+|+++..
T Consensus 250 k~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 250 KPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp -TCHHHHHHHHHCHHHTTTSHHH
T ss_pred CChhHHHHHHHHHHHhCCCChHH
Confidence 88 66777888888899998653
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=3.1e-08 Score=100.98 Aligned_cols=108 Identities=16% Similarity=0.063 Sum_probs=94.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....+..+..++.+|..+...|++++|+.+|++++...|+.. ....++.++|.++..+|++++|+..+++++
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-------DRSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445678889999999999999999999999999999877642 124789999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
.+.|.+..++..+|.+|..+|+...|...++.++.
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH
Confidence 99999999999999999999998777766666544
No 138
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.93 E-value=1.2e-07 Score=104.50 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCI-GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 669 a~~~Lg~~y~~l-G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
.+..+|.+|... |++++|+++|++|+.+...... .......+..+|.++...++|++|++.|+++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--------------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--------------PHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455678888888 9999999999999876322221 2223345667899999999999999999999
Q ss_pred HhhccCC---chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH--HhcCHHHHHHHHH
Q 002199 748 LSTNIES---RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-----TKAVSRRAALHE--MIRDYTQAASDLQ 817 (954)
Q Consensus 748 L~l~~~~---~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-----~~al~~lA~ly~--~lg~~eeAi~~~e 817 (954)
....... .......++..+.|++.+|++..|...+++....+|.+ ...+..+-.++. ....+++|+..|.
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 8764322 12333466788899999999999999999999999865 233444444443 3456888998888
Q ss_pred HHHHHhh
Q 002199 818 RLVSILE 824 (954)
Q Consensus 818 kAL~l~p 824 (954)
+..+|++
T Consensus 262 ~~~~ld~ 268 (282)
T PF14938_consen 262 SISRLDN 268 (282)
T ss_dssp TSS---H
T ss_pred ccCccHH
Confidence 8777743
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=2.5e-07 Score=104.17 Aligned_cols=150 Identities=20% Similarity=0.125 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.+++.+|..++..|++++|+..+...+...|+++..+..++.+++..++..+|++.+++++.++|..
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------------- 373 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS------------- 373 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------------
Confidence 7888888888888888888888888888888888888888888888888888888888888888864
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
....+.++..++..|++. +|+..+...+..+|.++..|..||+.|..+|+..+|..
T Consensus 374 ------~~l~~~~a~all~~g~~~---eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~--------------- 429 (484)
T COG4783 374 ------PLLQLNLAQALLKGGKPQ---EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL--------------- 429 (484)
T ss_pred ------cHHHHHHHHHHHhcCChH---HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH---------------
Confidence 344677788888888888 77777888888889999999999999999998777643
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
..+..|+..|++++|+..+..+.+...
T Consensus 430 -------------------A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 430 -------------------ARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred -------------------HHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 346678888999999999998887653
No 140
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.92 E-value=3.6e-07 Score=98.52 Aligned_cols=295 Identities=14% Similarity=0.094 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
.-....|.-++...++++|+....+.|..-.+. ...+-.+..++..+|+|++++.+---.+...-
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~------------ 74 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR------------ 74 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH------------
Confidence 345566777788889999999998888754332 33455567888899999988776544333211
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHhch
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS-----EKLLEMKADALYMLRKYEEAIQLCEHTLP 644 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~-----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~ 644 (954)
..-......+.+++++..+...-++. +++.+-...+.+.... ......++.++.-++.++++++.|+.+++
T Consensus 75 -~~~ds~~~~ea~lnlar~~e~l~~f~---kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 75 -ELEDSDFLLEAYLNLARSNEKLCEFH---KTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11122223455666665555444444 6666665555543222 35677799999999999999999999999
Q ss_pred hhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 002199 645 VAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHH 724 (954)
Q Consensus 645 l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~ 724 (954)
+...+... ...+-++..||..|-.+.++++|+.+..++..+.....-. .+ ........+
T Consensus 151 ~A~~~~D~-----------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~---------d~-~~kyr~~~l 209 (518)
T KOG1941|consen 151 YAHNNDDA-----------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK---------DW-SLKYRAMSL 209 (518)
T ss_pred HhhccCCc-----------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC---------ch-hHHHHHHHH
Confidence 87655332 2223367889999999999999999999998864322100 00 111223466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN------YTKAV 796 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~------~~~al 796 (954)
+.++..+..+|+.-.|.++.++|.++.. .+.+..+.++.-+|.+|...|+.+.|..-|+.|+..... ...++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al 289 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEAL 289 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 7789999999999999999999987743 556888899999999999999999999999999876422 35667
Q ss_pred HHHHHHHHHhcCHHH-----HHHHHHHHHHHhh
Q 002199 797 SRRAALHEMIRDYTQ-----AASDLQRLVSILE 824 (954)
Q Consensus 797 ~~lA~ly~~lg~~ee-----Ai~~~ekAL~l~p 824 (954)
...|.++..+.-..+ |++.-.+++++..
T Consensus 290 ~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 290 DGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 777777766655555 8888888888843
No 141
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=2.1e-07 Score=97.99 Aligned_cols=266 Identities=14% Similarity=0.052 Sum_probs=170.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 502 RISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 502 y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
+++-.+|..||+++.--.+..|.+..++..||.||+...+|.+|..+|++.-.+.|....-+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr------------------ 81 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR------------------ 81 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH------------------
Confidence 37788999999999999999999999999999999999999999999999999988642221
Q ss_pred HHHHHHHHHHhcChHHHH--------------------HHHHH-------HHHHHhcCC--CCHHHHHHHHHHHHHccCH
Q 002199 582 YINCSGKLLEQKTSEAAS--------------------SALER-------INEALSISS--CSEKLLEMKADALYMLRKY 632 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~--------------------eAL~~-------l~kaL~~~P--~~~~~~~~lA~~~~~lg~~ 632 (954)
+..+..++..+.+.+|. .||.+ .+..++.-| +.+......|-++++.|+|
T Consensus 82 -lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 82 -LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred -HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 11222222222222111 11110 111222233 4566777788888888888
Q ss_pred HHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcchhhHHHHHH
Q 002199 633 EEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS-ISDRYGSEILESS 711 (954)
Q Consensus 633 eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p-~~~~~~~~~l~~~ 711 (954)
++|++-|+.+++..--+.. .-+.++.++++.+++..|+++..+.++..- +++.
T Consensus 161 EaAvqkFqaAlqvsGyqpl-----------------lAYniALaHy~~~qyasALk~iSEIieRG~r~HPE--------- 214 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPL-----------------LAYNLALAHYSSRQYASALKHISEIIERGIRQHPE--------- 214 (459)
T ss_pred HHHHHHHHHHHhhcCCCch-----------------hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc---------
Confidence 8888888888877543221 345678888888888888888777665321 1111
Q ss_pred HHHHHH-----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-chhhHHHHHHHHHHHHHhc
Q 002199 712 MSLAGT-----------------VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-RPFAAICFCNRAAALQALG 773 (954)
Q Consensus 712 ~~l~~~-----------------~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-~p~~a~~~~~lA~~y~~lg 773 (954)
..+... ...+.++...+.++++.++++.|.+.+.. +-|.. ...++..+.|+|..- ..+
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~ 290 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMN-MDA 290 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhc-ccC
Confidence 011110 01234455567778888888888776533 22211 124556666666432 234
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 774 ~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
++.+..+-++-.|.++|--.+..-++-.+|.+..-|+-|...+
T Consensus 291 ~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred CccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 5666677777778888866677777777888877676666544
No 142
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.4e-10 Score=113.79 Aligned_cols=82 Identities=30% Similarity=0.445 Sum_probs=66.7
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh------HHHHHHHHHHHCCCCCcccccccccCCC--CCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD------QEQEIRKATKESPQNSHYGRSSDAYGYA--CRSS 935 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~------~~e~~~~~~~~l~~~~~~r~~yD~~g~~--~~~~ 935 (954)
...|.|.+|||.+++++.+|++||++++|+||||++...+ .++.+..++..|++ .+.|++||..|.- ..+.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsD-eekR~~YDetG~idd~~~d 90 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSD-EEKRAVYDETGSIDDESGD 90 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhH-HHHHHHHhccCCCCCccch
Confidence 4568999999999999999999999999999999996443 34567788899986 7899999998865 2234
Q ss_pred CCCcccccccc
Q 002199 936 RRQSRQDNWKT 946 (954)
Q Consensus 936 ~~~~~~~~~~~ 946 (954)
-...|.+||+-
T Consensus 91 ~~~~~~e~~~~ 101 (264)
T KOG0719|consen 91 IDEDWLEFWRA 101 (264)
T ss_pred hhhHHHHHHHH
Confidence 44569998873
No 143
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=6.7e-10 Score=126.47 Aligned_cols=65 Identities=35% Similarity=0.500 Sum_probs=58.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kR~~YD~~G~~ 72 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRD-PKKRQAYDQFGKA 72 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcc-HHHHHHHHHhCch
Confidence 6899999999999999999999999999999998632 445678889999997 8999999999864
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=1.2e-08 Score=89.69 Aligned_cols=98 Identities=32% Similarity=0.385 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.++.+|..++..|++++|+..|+++++..|.+. .++..+|.++...+++++|+..|++++.+.|....++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHH
Confidence 578899999999999999999999999999886 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
..+|.++...|++++|...+.+++...|
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 9999999999999999999999988766
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.91 E-value=2e-08 Score=94.64 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-- 525 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-- 525 (954)
++.++.+|..++..|+|++|+..|.+++...|++. ....+++.+|.+++..|++++|+..|+.++..+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST-------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence 46789999999999999999999999999998763 113689999999999999999999999999998875
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 526 -LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 526 -~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
..+++.+|.++..+|++++|+..|++++...|++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 6789999999999999999999999999999976
No 146
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=1e-09 Score=125.00 Aligned_cols=66 Identities=32% Similarity=0.555 Sum_probs=58.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d-~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSD-PQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcC-hhhHHHHhhcCcc
Confidence 36899999999999999999999999999999998642 345678899999997 9999999999864
No 147
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.90 E-value=1.3e-09 Score=116.11 Aligned_cols=223 Identities=11% Similarity=0.032 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS 659 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~ 659 (954)
.+.-..+..|+.+|.|+ +||++|.+++..+|.++.++.++|.+|+++.+|..|...|..++.++....-
T Consensus 98 SEiKE~GN~yFKQgKy~---EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K-------- 166 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYE---EAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK-------- 166 (536)
T ss_pred HHHHHhhhhhhhccchh---HHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH--------
Confidence 34567899999999999 8999999999999999999999999999999999999999999999864422
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH----------------HHHHHHH
Q 002199 660 VTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG----------------TVRALLH 723 (954)
Q Consensus 660 ~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~----------------~~~~~~~ 723 (954)
+|..++.+-..+|...+|.+.++.+|.+.|...... ..+..+..+.. ....+..
T Consensus 167 ---------AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELk-K~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~ 236 (536)
T KOG4648|consen 167 ---------AYSRRMQARESLGNNMEAKKDCETVLALEPKNIELK-KSLARINSLRERKIATKSTPGFTPARQGMIQILP 236 (536)
T ss_pred ---------HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHH-HHHHHhcchHhhhHHhhcCCCCCccccchhhhcc
Confidence 778889999999999999999999999999865422 11111111110 0011112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
....|..++..+.|+.++.+|..-+... ..+..+..+ +..|.+.-++++|+..+.+++.++|....+....+.+-
T Consensus 237 ~K~~G~~Fsk~~~~~~~i~~~~~~~A~~----~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~ 311 (536)
T KOG4648|consen 237 IKKPGYKFSKKAMRSVPVVDVVSPRATI----DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAE 311 (536)
T ss_pred ccCcchhhhhhhccccceeEeecccccc----CccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhH
Confidence 3345778888899999999888766554 223333333 67888999999999999999999999988888889999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 804 EMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.-+|...+|...++.++.+.|.+..
T Consensus 312 T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 312 TIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred HHHhhhhhcCcchhheeeecccccc
Confidence 9999999999999999999776544
No 148
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=9.2e-10 Score=125.30 Aligned_cols=66 Identities=32% Similarity=0.505 Sum_probs=58.7
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||++|++||||++... ..+.++.+||++|++ |.+|+.||+||..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d-~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSD-PQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCc-HhHHHHHHhhCCc
Confidence 36899999999999999999999999999999998654 345678899999997 9999999999964
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.90 E-value=2.8e-09 Score=90.98 Aligned_cols=67 Identities=27% Similarity=0.460 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMAATVDP 523 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kALel~P 523 (954)
.+..|..+|..++..|+|++|+.+|+++|+++|++. .+|+++|.+|+.+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----------~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----------EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 478899999999999999999999999999999987 99999999999999 79999999999999998
No 150
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=4.5e-07 Score=91.85 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=144.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
.-+..+.+..++++|..|-..|-+.-|.--|.+++.+.|+.+ .++..+|..+...|+|+.|.+.|...++
T Consensus 58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~----------~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP----------EVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH----------HHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 345577899999999999999999999999999999999987 9999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc--ChHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK--TSEAA 598 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g--~~~~a 598 (954)
++|.+--++.++|..++--|+|.-|.+.+.+-...+|.++... ...|+... ++.+|
T Consensus 128 LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~----------------------LWLYl~E~k~dP~~A 185 (297)
T COG4785 128 LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS----------------------LWLYLNEQKLDPKQA 185 (297)
T ss_pred cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH----------------------HHHHHHHhhCCHHHH
Confidence 9999999999999999999999999999999999888764321 11222221 22221
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 599 SSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 599 ~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
. ....+++...+... .-+. + +-+.+|+..+ ...++++..-..++.. ...-...+++.+|..|.
T Consensus 186 ~--tnL~qR~~~~d~e~-WG~~-i--V~~yLgkiS~-e~l~~~~~a~a~~n~~----------~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 186 K--TNLKQRAEKSDKEQ-WGWN-I--VEFYLGKISE-ETLMERLKADATDNTS----------LAEHLTETYFYLGKYYL 248 (297)
T ss_pred H--HHHHHHHHhccHhh-hhHH-H--HHHHHhhccH-HHHHHHHHhhccchHH----------HHHHHHHHHHHHHHHHh
Confidence 1 12223333332111 1111 1 2222333322 1233333333332211 01111126788999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 002199 679 CIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~ 695 (954)
..|+.++|...|+-++.
T Consensus 249 ~~G~~~~A~~LfKLaia 265 (297)
T COG4785 249 SLGDLDEATALFKLAVA 265 (297)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999999999988765
No 151
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=1.7e-09 Score=123.34 Aligned_cols=66 Identities=41% Similarity=0.572 Sum_probs=58.7
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||+||++||||++.... .+.++.+||++|++ |.+|+.||+||..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d-~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSD-AEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcc-hHhhhhhhhcCcc
Confidence 469999999999999999999999999999999986543 34678889999997 9999999999854
No 152
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=1.4e-09 Score=124.36 Aligned_cols=66 Identities=36% Similarity=0.500 Sum_probs=58.7
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd-~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSD-DEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhch-hHHHHHHhhhccc
Confidence 46999999999999999999999999999999998643 345678889999997 9999999999853
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.87 E-value=6.8e-09 Score=88.61 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhh
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR-DYTQAASDLQRLVSILE 824 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg-~~eeAi~~~ekAL~l~p 824 (954)
++.+|..+|.++..+|++++|+.+|+++|+++|+++.+++++|.+|..+| ++++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46788888888888888888888888888888888888888888888888 68888888888888865
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.87 E-value=3.8e-08 Score=92.70 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY---TKAVSR 798 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~---~~al~~ 798 (954)
..++.+|..+...|++++|+..|.+++...|+. +....+++.+|.++...|++++|+..|+.++...|++ +.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 356778999999999999999999999988543 3447789999999999999999999999999998885 678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+|.++..+|++++|+..|+++++..|++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 99999999999999999999999977654
No 155
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=1.7e-09 Score=122.94 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=58.2
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLID-DNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcC-cchhHHHHhcCcc
Confidence 5899999999999999999999999999999998632 346778899999997 8999999999864
No 156
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=1.8e-09 Score=123.25 Aligned_cols=65 Identities=34% Similarity=0.441 Sum_probs=58.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhH---HHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQ---EQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~---~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..|||+|||++|++||||++....+ +.++.+||++|++ +.+|+.||+||..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d-~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSD-PEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhch-hhhhhhhhccCCc
Confidence 589999999999999999999999999999999976544 4567889999987 9999999999964
No 157
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=1.6e-09 Score=119.51 Aligned_cols=66 Identities=35% Similarity=0.474 Sum_probs=58.4
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||++|++||||++.... ...++.+||++|++ +.+|+.||+||..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d-~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSD-PEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcC-HHHHHHHHhcCCc
Confidence 368999999999999999999999999999999986443 44678889999987 8999999999864
No 158
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=1.8e-09 Score=123.39 Aligned_cols=65 Identities=34% Similarity=0.510 Sum_probs=58.4
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..||++|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d-~~kR~~YD~~G~~ 71 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSD-PQKRAAYDQYGAA 71 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcC-HhhhhhHhhcCCc
Confidence 5899999999999999999999999999999998754 345678899999997 9999999999864
No 159
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=1.6e-09 Score=123.36 Aligned_cols=66 Identities=33% Similarity=0.482 Sum_probs=58.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..|||+|||+||++||||++... ..++++.+||++|++ +.+|+.||+||..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d-~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSD-PKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhcc-HHHHHHHHhhccc
Confidence 46899999999999999999999999999999998742 345678899999997 9999999999964
No 160
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.85 E-value=4.5e-07 Score=95.07 Aligned_cols=145 Identities=21% Similarity=0.204 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc-----------CCHH
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI-----------GKLE 684 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-----------G~~e 684 (954)
+.+++.+|.+++..|+|++|+..+++.++..|.+... -++++.+|.+++.+ +...
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~--------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~ 107 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA--------------DYALYMLGLSYYKQIPGILRSDRDQTSTR 107 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH--------------HHHHHHHHHHHHHHHHHHH-TT---HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHHhCccchhcccChHHHH
Confidence 4556666777777777777777777777776665321 12455556555433 3356
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHH
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCN 764 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~ 764 (954)
+|+..|+..+...|+..... ..-..+..+ ....+..-..+|..|++.|.|..|+..|+.++...|+. +....++..
T Consensus 108 ~A~~~~~~li~~yP~S~y~~-~A~~~l~~l--~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t-~~~~~al~~ 183 (203)
T PF13525_consen 108 KAIEEFEELIKRYPNSEYAE-EAKKRLAEL--RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT-PAAEEALAR 183 (203)
T ss_dssp HHHHHHHHHHHH-TTSTTHH-HHHHHHHHH--HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCchHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC-chHHHHHHH
Confidence 89999999999999887622 111111111 11122233446777778888888888888877777655 455567777
Q ss_pred HHHHHHHhcCHHHH
Q 002199 765 RAAALQALGQIADA 778 (954)
Q Consensus 765 lA~~y~~lg~~eeA 778 (954)
++.+|.++|..+.|
T Consensus 184 l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 184 LAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHTT-HHHH
T ss_pred HHHHHHHhCChHHH
Confidence 77777777777644
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.85 E-value=4.9e-08 Score=99.51 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVS 797 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~ 797 (954)
...+..+..+|..+...|++++|+.+|++++.+.+.. +....++.++|.++..+|++++|+..+.+++.+.|.+..++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 3455678889999999999999999999999987432 335679999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 002199 798 RRAALHEMIRD 808 (954)
Q Consensus 798 ~lA~ly~~lg~ 808 (954)
.+|.+|..+|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 99999998877
No 162
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=1.9e-09 Score=123.40 Aligned_cols=66 Identities=36% Similarity=0.491 Sum_probs=58.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..|||+|||++|++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD-PQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCC-HHHHHHHHhhccc
Confidence 36899999999999999999999999999999998632 345688899999997 9999999999854
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.84 E-value=6.8e-07 Score=96.22 Aligned_cols=184 Identities=12% Similarity=-0.016 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKL---LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~---~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
....+..+..++..|+|+ +|+..|++++...|..+.+ .+++|.+|+.+++|++|+..+++.++..|++...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~---~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~--- 105 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWK---QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--- 105 (243)
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---
Confidence 455778888999999999 7888899999999987554 4899999999999999999999999999987542
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHH
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIG---------------K---LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGT 717 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG---------------~---~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~ 717 (954)
-++++.+|.++..++ + ..+|+..|++.++..|+..-.. ..-..+..+ .
T Consensus 106 -----------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~-~A~~rl~~l--~ 171 (243)
T PRK10866 106 -----------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT-DATKRLVFL--K 171 (243)
T ss_pred -----------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH-HHHHHHHHH--H
Confidence 246788888865554 1 3578899999999999775421 111111111 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~e 783 (954)
...+..-...|..|++.|.|..|+.-++.++...|+. +....++..+..+|..+|..++|.....
T Consensus 172 ~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t-~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 172 DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT-QATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 1112222345666667777777777777766666544 4555666666666666666666655443
No 164
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=8.3e-07 Score=100.04 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS 659 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~ 659 (954)
..++..+..++..++++ .|+..++..+...|+++.++...+++++..++..+|++.+++++.+.|...
T Consensus 307 aa~YG~A~~~~~~~~~d---~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--------- 374 (484)
T COG4783 307 AAQYGRALQTYLAGQYD---EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--------- 374 (484)
T ss_pred HHHHHHHHHHHHhcccc---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---------
Confidence 34555555566666666 444445555666666666666666666666666666666666666666542
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 660 VTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 660 ~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
|.++.+|.+|+..|++.+|+..++..+..+|+++.
T Consensus 375 --------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 375 --------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 24556666666666666666666666666665554
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.83 E-value=3.5e-08 Score=86.73 Aligned_cols=97 Identities=29% Similarity=0.354 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+..+|..++..|++++|+..+++++... |....+++.+|.++...+++++|+..|+.++.+.|.+..++..+|.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 5668999999999999999999999998 555688999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhh
Q 002199 804 EMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p 824 (954)
..+|++++|...+.+++++.|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 999999999999999998854
No 166
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=2.6e-09 Score=122.15 Aligned_cols=65 Identities=34% Similarity=0.545 Sum_probs=58.2
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+|++|||+||++||||++... ..+.++.+||++|++ |.+|+.||+||..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~~r~~yD~~G~~ 72 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSD-PQKKAQYDQFGTA 72 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC-HhhhCchhhcCcc
Confidence 6899999999999999999999999999999998642 345678899999997 8999999999864
No 167
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=2.4e-09 Score=122.22 Aligned_cols=65 Identities=37% Similarity=0.522 Sum_probs=58.3
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d-~~kr~~yD~~G~~ 71 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSD-DQKRAQYDQFGHA 71 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhcc-HhHHHHHHhcCcc
Confidence 6899999999999999999999999999999998654 345678889999996 9999999999864
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.82 E-value=1.3e-07 Score=95.92 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
.....+..|..+|..+...|+|++|+..|.+++.+.|+.. ..+.+|.++|.+|..+|++++|+..|++++.++
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-------DRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3455788999999999999999999999999999876532 124689999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHH-------HcCCHHHHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHL-------VLGEIENAQHYYHK 551 (954)
Q Consensus 523 P~~~~a~~~LA~iy~-------~lG~~eeAl~~yek 551 (954)
|....++..+|.++. .+|++++|+..|.+
T Consensus 103 ~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 103 PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 999999999999998 55666655544443
No 169
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=2.4e-09 Score=122.85 Aligned_cols=65 Identities=38% Similarity=0.595 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..|||+|||++|++||||++... ....++.+||++|++ +.+|+.||+||..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSD-AQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcC-HHHHHHHHhcccc
Confidence 3799999999999999999999999999999998742 345678899999996 8999999999864
No 170
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=2.8e-09 Score=121.98 Aligned_cols=65 Identities=37% Similarity=0.514 Sum_probs=58.5
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd-~~kR~~YD~~g~~ 70 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSD-PEKRKLYDQFGHA 70 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcC-HHHHHHHhhhccc
Confidence 6899999999999999999999999999999998754 345678899999997 8999999999864
No 171
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=3.1e-09 Score=121.07 Aligned_cols=66 Identities=33% Similarity=0.515 Sum_probs=58.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..+|++|||++|++||||++... ..+.++.+||++|++ |.+|+.||+||..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRD-AEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcc-hhhhhhhhhcccc
Confidence 36899999999999999999999999999999998642 345678889999997 8999999999864
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.81 E-value=8.9e-09 Score=91.79 Aligned_cols=84 Identities=24% Similarity=0.277 Sum_probs=74.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVL 539 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~l 539 (954)
.+|+|+.|+.+|+++++..|.++ ...+++.+|.||+.+|+|++|+..+++ +..+|.+...++.+|.|++.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~--------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP--------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH--------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHCCCCh--------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999641 126888899999999999999999999 889999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 002199 540 GEIENAQHYYHKL 552 (954)
Q Consensus 540 G~~eeAl~~yeka 552 (954)
|+|++|+..|+++
T Consensus 72 ~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 GKYEEAIKALEKA 84 (84)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC
Confidence 9999999999875
No 173
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.81 E-value=1.2e-05 Score=92.76 Aligned_cols=331 Identities=11% Similarity=0.060 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHH-----HHHHHcC-------------CH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRA-----ATRISLG-------------RM 508 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA-----~~y~~lg-------------~~ 508 (954)
....|..+|..|.+.|.|++|.+.|+++|+..-.-. .+..++-..+ .+...++ +.
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr-------DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR-------DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh-------hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 345789999999999999999999999998754322 1112221111 1111111 22
Q ss_pred HHHHHHHHHHH------------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hchhhhhhHHHHHHHHHHHHH
Q 002199 509 REALEDCMMAA------------TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN-SAAAVCLDRRITIEAADGLQK 575 (954)
Q Consensus 509 eeAl~~~~kAL------------el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~-l~P~~~~~~~~~~ea~~~l~~ 575 (954)
+-.+..|+..+ ..+|++..-|..+.. +..|+..+-+..|..|+. .+|.-....
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs------------ 385 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGS------------ 385 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCC------------
Confidence 33444454444 346777777776544 456788888888888775 455321110
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh-
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS-S---CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF- 650 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~-P---~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~- 650 (954)
--.-|...+..|...++.+ .|-..++++++.. + +-..+|...|..-+...+++.|+.+++.++..-....
T Consensus 386 --~~~Lw~~faklYe~~~~l~---~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~ 460 (835)
T KOG2047|consen 386 --PGTLWVEFAKLYENNGDLD---DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPEL 460 (835)
T ss_pred --hhhHHHHHHHHHHhcCcHH---HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhh
Confidence 1233677788888888888 6777888888765 2 2367888899999999999999999999987633211
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
................+-.|..++...-..|-++.-...|.+.+.+.-..+. ...+.|..
T Consensus 461 ~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--------------------ii~NyAmf 520 (835)
T KOG2047|consen 461 EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--------------------IIINYAMF 520 (835)
T ss_pred hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--------------------HHHHHHHH
Confidence 1111111111111222234566677777888888888888888775332222 34456778
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHH---HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICF---CNRAAALQALGQIADAIADCSLAMALDEN-YTK-AVSRRAALHEM 805 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~---~~lA~~y~~lg~~eeAi~~~ekAL~ldP~-~~~-al~~lA~ly~~ 805 (954)
+....-+++|.+.|++.+.+-+- |....+| +.....-+.--..+.|...|++||+..|. +.. .++..|.+-..
T Consensus 521 LEeh~yfeesFk~YErgI~LFk~--p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 521 LEEHKYFEESFKAYERGISLFKW--PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHhhHHHHHHHHHHHcCCccCCC--ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 88888899999999999998642 3333333 33333333344899999999999998873 333 34455777777
Q ss_pred hcCHHHHHHHHHHHHHHhhh
Q 002199 806 IRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 806 lg~~eeAi~~~ekAL~l~p~ 825 (954)
-|--..|+..|++|-.-.+.
T Consensus 599 ~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 599 HGLARHAMSIYERATSAVKE 618 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCH
Confidence 78888999999987665443
No 174
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.2e-09 Score=111.72 Aligned_cols=66 Identities=41% Similarity=0.548 Sum_probs=60.0
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..++|.+||+++++++.+|||+||+|++++|||++.+ + +++.+|++|+..|++ +.+|..||.||.-
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD-~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSD-PTKRNVYDEYGEL 99 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcC-hhhhhhHHHhhhH
Confidence 5689999999999999999999999999999999876 3 667888999999997 9999999999854
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.80 E-value=3.2e-07 Score=101.24 Aligned_cols=182 Identities=19% Similarity=0.138 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG 697 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~ 697 (954)
++...|.+|...++|++|...|.++......... .......+...+.+|... ++++|+.+|++++.+.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y 104 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD-----------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIY 104 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH
Confidence 4445588899999999999999999877654211 111122455666676655 9999999999998753
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcC
Q 002199 698 SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-GRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 698 p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
-. .......+..+..+|.+|... +++++|+++|++|+.+.. +.......++..+|.++..+|+
T Consensus 105 ~~--------------~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 105 RE--------------AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HH--------------CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred Hh--------------cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 21 222334456778899999999 999999999999999843 2234567788999999999999
Q ss_pred HHHHHHHHHHHHHhCCC------CH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 775 IADAIADCSLAMALDEN------YT-KAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP~------~~-~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
|++|+..|++++...-+ .+ ..++..+.|++.+||+..|...|++...++|.
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999875321 12 34567788999999999999999999988653
No 176
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.79 E-value=4.3e-09 Score=120.95 Aligned_cols=65 Identities=40% Similarity=0.598 Sum_probs=58.3
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..+||+|||+||++||||++... ....++.+||++|++ +.+|+.||+||..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSN-DDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhh-hhhhhhhhhccch
Confidence 5899999999999999999999999999999998642 345788899999997 8999999999864
No 177
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.4e-09 Score=116.11 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=62.3
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhH-------HHHHHHHHHHCCCCCcccccccccCCCCCCCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQ-------EQEIRKATKESPQNSHYGRSSDAYGYACRSSRR 937 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~-------~e~~~~~~~~l~~~~~~r~~yD~~g~~~~~~~~ 937 (954)
..+||.+|+|+++|+++||++|||++++.+||||..+++. +..+.+||++|++ |.+|++||.||..+ -+-
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsD-p~kRaIYD~~G~qG--L~t 84 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSD-PQKRAIYDNYGEQG--LKT 84 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHhhhcc--ccc
Confidence 4589999999999999999999999999999999987754 2456789999997 99999999999542 333
Q ss_pred Ccccc
Q 002199 938 QSRQD 942 (954)
Q Consensus 938 ~~~~~ 942 (954)
.+|.-
T Consensus 85 ~gwEl 89 (546)
T KOG0718|consen 85 EGWEL 89 (546)
T ss_pred cCcee
Confidence 44553
No 178
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.2e-07 Score=101.53 Aligned_cols=109 Identities=31% Similarity=0.513 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
+..+.|+.+...|+.||+.++|..|+.+|+++|+..-.++ .-.+.+|.|||.|.+.+|+|..||.++.+|+.++
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~------dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~ 149 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP------DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK 149 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc------cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999999999999866554 3457899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
|.+.+++++-|.|++.+.++.+|+...+..+.++-
T Consensus 150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 150 PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999999999999887654
No 179
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=4.2e-09 Score=120.54 Aligned_cols=66 Identities=35% Similarity=0.510 Sum_probs=58.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccc----cCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDA----YGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~----~g~~ 931 (954)
..|||++|||.++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+ ||..
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSD-EKKRKEYDEARSLFGNG 81 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCc-hhhHHHHHHHHhhhccc
Confidence 36899999999999999999999999999999998632 455678899999997 899999998 8854
No 180
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.77 E-value=1.1e-05 Score=81.85 Aligned_cols=202 Identities=25% Similarity=0.251 Sum_probs=155.1
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALS--ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~--~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
...+..+...+.+. .++..+...+. ..+.....+..++.++...+++..++..+..++...+....
T Consensus 63 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 130 (291)
T COG0457 63 LLLALALLKLGRLE---EALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL--------- 130 (291)
T ss_pred HHHHHHHHHcccHH---HHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---------
Confidence 33444444455555 44444555554 56677788888999999999999999999999987765411
Q ss_pred hhhHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 002199 661 TYSLARLWRWRLISK-SYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE 739 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~-~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee 739 (954)
.....+. ++...|+++.|+..|.+++...|.... ....+...+..+...+++..
T Consensus 131 --------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 131 --------AEALLALGALYELGDYEEALELYEKALELDPELNE-----------------LAEALLALGALLEALGRYEE 185 (291)
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc-----------------hHHHHHHhhhHHHHhcCHHH
Confidence 2233444 899999999999999999775553000 11223334555788899999
Q ss_pred HHHHHHHHHhhccCCchh-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 740 AVEHYTVALSTNIESRPF-AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 740 Ai~~y~kAL~l~~~~~p~-~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
|+..+.+++... +. ....+..++.++...+++.+|+..+..++...|.....+..++.++...+.+++|...+.+
T Consensus 186 a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 186 ALELLEKALKLN----PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred HHHHHHHHHhhC----cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998 55 6788999999999999999999999999999999888888888888877889999999999
Q ss_pred HHHHhhh
Q 002199 819 LVSILEN 825 (954)
Q Consensus 819 AL~l~p~ 825 (954)
++...|.
T Consensus 262 ~~~~~~~ 268 (291)
T COG0457 262 ALELDPD 268 (291)
T ss_pred HHHhCcc
Confidence 9999664
No 181
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.76 E-value=3.5e-05 Score=78.23 Aligned_cols=237 Identities=27% Similarity=0.303 Sum_probs=172.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hchhhhhhHHHHHHHHHHHHHHHhHH
Q 002199 505 LGRMREALEDCMMAATVDPN--FLKVYMRAAKCHLVLGEIENAQHYYHKLLN--SAAAVCLDRRITIEAADGLQKAQKVT 580 (954)
Q Consensus 505 lg~~eeAl~~~~kALel~P~--~~~a~~~LA~iy~~lG~~eeAl~~yekaL~--l~P~~~~~~~~~~ea~~~l~~~~~~~ 580 (954)
.+.+..++..+..++...+. ....+..++..+...+.+..++..+...+. ..+.. ..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 96 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-------------------AE 96 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-------------------HH
Confidence 46777777778887777776 367778888888888888888888888775 22221 22
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHhchhhhh--hhhhhhhcc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKAD-ALYMLRKYEEAIQLCEHTLPVAEK--NFASVLADN 657 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~-~~~~lg~~eeAi~~~ekaL~l~p~--~~~~~~~~~ 657 (954)
.+...+......+.+. .++..+..++...+.........+. ++...++++.|+..+.+++...|. ..
T Consensus 97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 166 (291)
T COG0457 97 ALLNLGLLLEALGKYE---EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNEL------- 166 (291)
T ss_pred HHHHHHHHHHHHhhHH---HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch-------
Confidence 3344444444555555 6777777777777666555555555 899999999999999999776552 11
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
...+..++..+...++++.|+..+.+++...+.. ....+..++..+...+++
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 167 ---------AEALLALGALLEALGRYEEALELLEKALKLNPDD-------------------DAEALLNLGLLYLKLGKY 218 (291)
T ss_pred ---------HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------------------chHHHHHhhHHHHHcccH
Confidence 1134455666888999999999999999887653 123456678889999999
Q ss_pred HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 002199 738 TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 738 eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l 806 (954)
..|+..+..++... +.....+..++..+...+.+++|...+.+++...|. ++.++..+...
T Consensus 219 ~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 279 (291)
T COG0457 219 EEALEYYEKALELD----PDNAEALYNLALLLLELGRYEEALEALEKALELDPD----LYNLGLALLLL 279 (291)
T ss_pred HHHHHHHHHHHhhC----cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc----hhhhhHHHHHH
Confidence 99999999999998 445667777888888777899999999999999997 34444444443
No 182
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.76 E-value=5.6e-09 Score=119.26 Aligned_cols=66 Identities=36% Similarity=0.572 Sum_probs=58.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..+||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||.||..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d-~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSD-PQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcc-hhhhhHhhhcccc
Confidence 36899999999999999999999999999999998632 344578899999987 8999999999864
No 183
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.76 E-value=2.6e-08 Score=88.81 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=74.3
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
.+++|+.|+.+|++++...|.+ + +..+++.+|.||+.+|+|++|+..+++ +..+|.++..++.+|.+++.+|+|++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~-~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN-P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT-H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC-h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999999999998542 2 677888899999999999999999999 888999999999999999999999999
Q ss_pred HHHHHHH
Q 002199 813 ASDLQRL 819 (954)
Q Consensus 813 i~~~ekA 819 (954)
+..|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
No 184
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.75 E-value=7.2e-09 Score=117.94 Aligned_cols=65 Identities=35% Similarity=0.496 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..||++|||+||++||||++... ..+.++.+||++|++ +.+|+.||.||..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d-~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSD-PQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcC-hhhhhhhcccCCc
Confidence 5899999999999999999999999999999998643 334678899999997 8999999999864
No 185
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=8.4e-07 Score=89.89 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 490 PLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 490 ~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..+..++.+|..|-.+|-+.-|.-+|.++|.+.|+.+.++..+|.-+...|+|+.|.+.|...++++|.+.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--------- 133 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--------- 133 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---------
Confidence 34689999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH-HHHHhchhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQ-LCEHTLPVAEK 648 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~-~~ekaL~l~p~ 648 (954)
-.+++++..++.-|++. -|.+.+.+-...+|.+|---.++=..- ..-+..+|.. +.+++...+.+
T Consensus 134 ----------Ya~lNRgi~~YY~gR~~---LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e 199 (297)
T COG4785 134 ----------YAHLNRGIALYYGGRYK---LAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKE 199 (297)
T ss_pred ----------HHHhccceeeeecCchH---hhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHh
Confidence 33567777777788888 455556666667787764332221111 2224444443 33444333321
Q ss_pred hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 649 NFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG 728 (954)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG 728 (954)
.|.|+..+ +.+|+..+ ...++++..... +... + .......++.+|
T Consensus 200 ------------------~WG~~iV~---~yLgkiS~-e~l~~~~~a~a~-~n~~----------~--Ae~LTEtyFYL~ 244 (297)
T COG4785 200 ------------------QWGWNIVE---FYLGKISE-ETLMERLKADAT-DNTS----------L--AEHLTETYFYLG 244 (297)
T ss_pred ------------------hhhHHHHH---HHHhhccH-HHHHHHHHhhcc-chHH----------H--HHHHHHHHHHHH
Confidence 24444332 23333321 112233322211 1110 0 111123556677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhc
Q 002199 729 NEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 729 ~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
..+...|+.++|...|.-|+..+
T Consensus 245 K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHh
Confidence 77777777777777777776654
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=98.74 E-value=1.3e-07 Score=93.27 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..++..+..+..|..+|.+|+|++|...|+-....+|.++ ..++.+|.|+..+++|++|+..|..|..++
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~----------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP----------DYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3467788999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
++++...+..|.||+.+|+...|+..|+.++..
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999883
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.74 E-value=1.5e-07 Score=95.56 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
..+..+..+|..+...|++++|+..|++++.+.+.. +..+.+++++|.++..+|++++|+..|++++.++|.+..++..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 345677889999999999999999999999986432 3456799999999999999999999999999999999999999
Q ss_pred HHHHHH-------HhcCHHHHHHHHHHHHHHhh
Q 002199 799 RAALHE-------MIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 799 lA~ly~-------~lg~~eeAi~~~ekAL~l~p 824 (954)
+|.++. .+|++++|+..+.+++.++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999888 88898877777777766643
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.4e-07 Score=99.36 Aligned_cols=105 Identities=26% Similarity=0.159 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHH
Q 002199 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG---QIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 720 ~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg---~~eeAi~~~ekAL~ldP~~~~al 796 (954)
....|..+|.+|+..+++..|...|.+|+++. |.++.++..+|.+++... ...++...+.+++.+||.++.++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34577889999999999999999999999999 888999999999888765 57899999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 797 SRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 797 ~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+.||..++..|+|.+|+..++..+++.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999887643
No 189
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.73 E-value=7.6e-09 Score=117.97 Aligned_cols=65 Identities=34% Similarity=0.471 Sum_probs=58.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..|||+|||++|++||||++... ....+|.+||++|++ +.+|+.||+||..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d-~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKD-EQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhh-HhHhhHHHhcccc
Confidence 5899999999999999999999999999999998643 355788899999987 8999999999853
No 190
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.72 E-value=8.7e-09 Score=123.57 Aligned_cols=68 Identities=26% Similarity=0.317 Sum_probs=60.2
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYAC 932 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~~ 932 (954)
...+||.+|||.++++..+||+|||+||++|||||++... .++++.+||++|++ |..|+.||.||..+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSD-p~kRk~YD~~G~~G 641 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGD-IDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCC-HHHHHHHhhccccc
Confidence 4579999999999999999999999999999999987543 45677889999997 99999999999753
No 191
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.72 E-value=5.6e-07 Score=89.02 Aligned_cols=134 Identities=19% Similarity=0.124 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
+.+...+......+..+++..+...+++.+...|+.+ --..+.+.+|.+++..|++++|+..|+.++...|+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP-------YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 4455666777777788888888888888888888873 113677788888888888888888888888877554
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 526 ---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 526 ---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
..+.++||.+++..|++++|+..++.+.
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~------------------------------------------------- 112 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQIP------------------------------------------------- 112 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------------------------------------------------
Confidence 4577888888888888888888875421
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhc
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL 643 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL 643 (954)
..+..+.++..+|.+|+..|++++|+..|+++|
T Consensus 113 --------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 --------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 122335567788999999999999999999875
No 192
>PHA03102 Small T antigen; Reviewed
Probab=98.71 E-value=1.3e-08 Score=99.74 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=59.4
Q ss_pred chhhhhccccCC--CHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 867 DFYLILGVKASD--TAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 867 dyYkiLgv~~~a--~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+|.+|||++++ +..+||+|||++++++||||+......+++.++++++.+ +..|..||.+|..
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d-~~~r~~yd~~g~~ 71 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRE-SVKSLRDLDGEED 71 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhh-HHHhccccccCCc
Confidence 479999999999 999999999999999999999887888999999999986 8899999999965
No 193
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.4e-09 Score=111.62 Aligned_cols=66 Identities=35% Similarity=0.477 Sum_probs=58.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-h---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-D---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||.+||+..++++.+|++|||+.||+|||||+++. . .+..+.++|++|++ +..|+.||.+|..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D-~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSD-EESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhhh
Confidence 57899999999999999999999999999999999865 2 34567789999987 8999999999854
No 194
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.71 E-value=1e-08 Score=116.61 Aligned_cols=64 Identities=38% Similarity=0.569 Sum_probs=57.3
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
|||++|||+++++..+||+|||++|++||||++... ....++.+||++|++ +.+|+.||.||..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d-~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSD-PEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhC-hHHHHhhhhcccc
Confidence 699999999999999999999999999999998643 355678899999997 8899999999864
No 195
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.70 E-value=1.3e-08 Score=116.40 Aligned_cols=65 Identities=37% Similarity=0.565 Sum_probs=57.9
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||+|||+++++||||++.... ...++.+||++|++ +.+|+.||.||..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d-~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSD-AEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcc-hhhhhhHhhcCCc
Confidence 58999999999999999999999999999999997543 44678899999996 9999999999854
No 196
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.9e-08 Score=100.86 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
...++.+.+.|+.+|....|..||.+|.+||.++|... ..|.++|.||+++.+++.+..++.+|++++|+
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~----------~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA----------SYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcc----------hhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 45677889999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
.+++++.+|.+++....|.+|+..++++..+.
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999997653
No 197
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.69 E-value=8.9e-07 Score=82.83 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
...+....+-..|..+...|+++.|++.|.++|.+.|..+ .+|.|+|.++.-+|+.++|+.++++|+++.
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra----------SayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERA----------SAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch----------HhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3455667788899999999999999999999999999997 999999999999999999999999999997
Q ss_pred CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 523 PNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 523 P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
-.. -.++..+|.+|..+|+.+.|...|+.+.++...
T Consensus 108 g~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 108 GDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 433 457899999999999999999999999887553
No 198
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.68 E-value=1.1e-08 Score=113.72 Aligned_cols=64 Identities=33% Similarity=0.416 Sum_probs=57.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
.|||++|||.++++..+||+|||++|++||||++... ....++.+||++|++ +.+|+.||+||.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~-~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSD-EQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhh-HHHHHHHHHhhc
Confidence 5899999999999999999999999999999998643 445678899999986 899999999873
No 199
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-08 Score=112.46 Aligned_cols=64 Identities=33% Similarity=0.396 Sum_probs=56.0
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
..+||++|||.+++++.+||++||+|||+|||||++.- ..+..|..||++|++ |..|+-||.+.
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSd-p~eR~wyd~hr 75 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSD-PQERAWYDSHR 75 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcC-hHhhhhHHHHH
Confidence 56899999999999999999999999999999997644 234678889999997 99999999754
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.6e-07 Score=99.12 Aligned_cols=125 Identities=16% Similarity=0.149 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002199 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSG 587 (954)
Q Consensus 508 ~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~ 587 (954)
.+.-+.-++..|..+|++.+.|..||.+|+.+|++..|...|.+++++.|++ ...+..++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-------------------~~~~~g~ae 198 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-------------------PEILLGLAE 198 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-------------------HHHHHHHHH
Confidence 4566777888899999999999999999999999999999999999999987 455666777
Q ss_pred HHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 588 KLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 588 ~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
.++....-..-.++...+.+++..+|.++.++..+|..+++.|+|.+|+..++..++..|.+..
T Consensus 199 aL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 199 ALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 7776655555558899999999999999999999999999999999999999999999987643
No 201
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.7e-07 Score=93.90 Aligned_cols=126 Identities=19% Similarity=0.176 Sum_probs=107.3
Q ss_pred HhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCcccccCCchHHHHHHHHHHHHHHc
Q 002199 434 KQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS--------VPLSETAGCCIKPLVLCYSNRAATRISL 505 (954)
Q Consensus 434 ~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~--------~P~~~~~~~~~~~la~~~~~lA~~y~~l 505 (954)
.+.|.+...+.......+.+.|+.+|+.|+|.+|+..|..||-. .|..+.--...+....++.|.+.|++..
T Consensus 164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~ 243 (329)
T KOG0545|consen 164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK 243 (329)
T ss_pred cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH
Confidence 34677777888888899999999999999999999999999864 2433210000112467899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 506 GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 506 g~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
|+|-++++.+..+|..+|.+.+||+++|.++...-+..+|...|.++|+++|..
T Consensus 244 ~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999999999999999999964
No 202
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.67 E-value=7.4e-05 Score=86.36 Aligned_cols=334 Identities=14% Similarity=0.081 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcC
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN--FLKVYMRAAKCHLVLG 540 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~--~~~a~~~LA~iy~~lG 540 (954)
.|..--.+|++++-..-+.+ .+|......++.+|+...-...|.+||..-|- +..+|-..-......+
T Consensus 83 ~~~~vn~c~er~lv~mHkmp----------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~ 152 (835)
T KOG2047|consen 83 AYESVNNCFERCLVFMHKMP----------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG 152 (835)
T ss_pred HHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC
Confidence 35555667777777555554 78888899999999999999999999987773 3344544445556677
Q ss_pred CHHHHHHHHHHHHhhchhhhhhHH-------HHHHHHHHHHHHHh------------HHHHHHHHHHHHHhcChHHHHHH
Q 002199 541 EIENAQHYYHKLLNSAAAVCLDRR-------ITIEAADGLQKAQK------------VTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 541 ~~eeAl~~yekaL~l~P~~~~~~~-------~~~ea~~~l~~~~~------------~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
-.+-++..|++.|++.|......- ...++...+..... ...|..+.......-+...-...
T Consensus 153 lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 153 LPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 788999999999999996522111 11111111111111 11111111111111110000011
Q ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh--hhhh----------------hh-hc-----
Q 002199 602 LERINEALSISSCS-EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK--NFAS----------------VL-AD----- 656 (954)
Q Consensus 602 L~~l~kaL~~~P~~-~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~--~~~~----------------~~-~~----- 656 (954)
-..++..+...++. ..+|..||..|++.|.++.|...|+++++.--. ++.. .. ++
T Consensus 233 daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 233 DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 22344445444443 457888999999999999999988888742110 0000 00 00
Q ss_pred ---cCcc---------------------------------------------------------------hhhHHHHHHH
Q 002199 657 ---NGSV---------------------------------------------------------------TYSLARLWRW 670 (954)
Q Consensus 657 ---~~~~---------------------------------------------------------------~~~~~~l~a~ 670 (954)
...+ ...... .|
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~--Lw 390 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGT--LW 390 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhh--HH
Confidence 0000 001111 34
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|..|...|+++.|...|+++.+..=.. ....+..|.+-|..-++..+++.|+.+.+.|...
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~----------------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKT----------------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccc----------------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 455666666666666666666665532111 1122445666777778888888888888888765
Q ss_pred cc--------CCch------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 751 NI--------ESRP------FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 751 ~~--------~~~p------~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
-. +..| ....+|..++......|-++.....|+++|.+.=-.|+...+.|..+....-+++|.+.|
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 21 1112 234566677777778888888888888888888778888888898888888899999999
Q ss_pred HHHHHHhh
Q 002199 817 QRLVSILE 824 (954)
Q Consensus 817 ekAL~l~p 824 (954)
++.+.|++
T Consensus 535 ErgI~LFk 542 (835)
T KOG2047|consen 535 ERGISLFK 542 (835)
T ss_pred HcCCccCC
Confidence 99888875
No 203
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.67 E-value=1.2e-08 Score=85.96 Aligned_cols=59 Identities=32% Similarity=0.445 Sum_probs=52.4
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-----HHHHHHHHHHHCCCCCccccccc
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-----QEQEIRKATKESPQNSHYGRSSD 926 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-----~~e~~~~~~~~l~~~~~~r~~yD 926 (954)
+||++|||.++++..+|+++|+++++++|||+..... ....|.++++.|++ +..|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~-~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSD-PERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCC-HHHHHhcC
Confidence 5899999999999999999999999999999976655 45678889999986 88888887
No 204
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=4.3e-06 Score=97.87 Aligned_cols=309 Identities=16% Similarity=0.050 Sum_probs=153.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 455 G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
+....+.|.+++|+.+|.+.-+. -.+-..|...|.+++|++..+.-=.+. .-..|++.|.
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~------------------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY------------------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAK 866 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH------------------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHH
Confidence 34445556666666666665432 233445667777777777665432222 2347888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC
Q 002199 535 CHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC 614 (954)
Q Consensus 535 iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~ 614 (954)
-+...++.+.|+++|+++-...-+ +... ..++. .+++.|-+- ..
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafe----------v~rm-------------------L~e~p---~~~e~Yv~~----~~ 910 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFE----------VFRM-------------------LKEYP---KQIEQYVRR----KR 910 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHH----------HHHH-------------------HHhCh---HHHHHHHHh----cc
Confidence 888888888888888875321100 0000 00011 122222111 12
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc-----chhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS-----VTYSLARLWRWRLISKSYFCIGKLEVALDL 689 (954)
Q Consensus 615 ~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~-----~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~ 689 (954)
++.+|.+.|..+...|+.+.|+.+|..+-+....-- ........ +.......-++|.||..|...|++.+|+.+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~Vr-I~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVR-IKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhhee-eEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 234444455555555555555555544422111000 00000000 000001112788999999999999999999
Q ss_pred HHHHHhhCCCCcchh-hHHHHHHHHHH------------HHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHH-----HHhh
Q 002199 690 LQKLEQVGSISDRYG-SEILESSMSLA------------GTVRALLHH-KSAGNEAFKSGRYTEAVEHYTV-----ALST 750 (954)
Q Consensus 690 l~kal~l~p~~~~~~-~~~l~~~~~l~------------~~~~~~~~~-~~lG~~~~~~g~~eeAi~~y~k-----AL~l 750 (954)
|.+|........-+- .++-+.+..+. ....+.-.+ .....+|.+.|.+.+|+++-=+ ||++
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 998755321100000 00001111110 011111101 1112445555666655553211 1111
Q ss_pred -ccC-CchhhHHHHHHHHHHHHHhcCHHHHHHHH------HHHHHhC----------------CC---------CHHHHH
Q 002199 751 -NIE-SRPFAAICFCNRAAALQALGQIADAIADC------SLAMALD----------------EN---------YTKAVS 797 (954)
Q Consensus 751 -~~~-~~p~~a~~~~~lA~~y~~lg~~eeAi~~~------ekAL~ld----------------P~---------~~~al~ 797 (954)
..+ +...++.++..-+..+....+|++|...+ +.|+.+- |. -...+-
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 001 11235556666666777777888877654 3344331 21 145788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Q 002199 798 RRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 798 ~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
.+|.+++++|.|..|.+-|.+|=
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhhhh
Confidence 89999999999999998887653
No 205
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.66 E-value=1.6e-08 Score=116.02 Aligned_cols=66 Identities=35% Similarity=0.513 Sum_probs=58.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..||++|||++|++||||++... ..+.++.+||++|++ +..|+.||+||..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSD-PDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcC-HHHHHHHHHhccc
Confidence 36899999999999999999999999999999998643 345678899999996 8899999999864
No 206
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=1e-06 Score=87.22 Aligned_cols=125 Identities=19% Similarity=0.151 Sum_probs=103.5
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
.+..++...+...+++.+...|.... ...+...+|.+++..|++++|+..|+.++...++ +.
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~y-----------------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~ 82 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPY-----------------AALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PE 82 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChH-----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HH
Confidence 33588888888889998887776633 1235566899999999999999999999997633 25
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
....+.+.+|.+++..|++++|+..++. +.-.+-.+.++..+|.+|...|++++|+..|+++|
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5678899999999999999999999976 33445567788999999999999999999999885
No 207
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.64 E-value=2e-08 Score=114.71 Aligned_cols=65 Identities=35% Similarity=0.522 Sum_probs=58.0
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..+|++|||+++++||||++... ..+.++.+||++|++ +..|+.||+||..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~-~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSD-PETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhc-hHHHHHHhhcccc
Confidence 5899999999999999999999999999999998654 345678889999986 8999999999864
No 208
>PRK11906 transcriptional regulator; Provisional
Probab=98.63 E-value=1e-06 Score=99.89 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHH---HhCCCCcccccCCchHHHHHHHHHHHHHHc---------CCHHHHHHH
Q 002199 450 MWRLRGNQAYKNN---NLTEAEDFYTQGI---NSVPLSETAGCCIKPLVLCYSNRAATRISL---------GRMREALED 514 (954)
Q Consensus 450 ~l~~~G~~~~~~g---~y~eAi~~y~kAL---~~~P~~~~~~~~~~~la~~~~~lA~~y~~l---------g~~eeAl~~ 514 (954)
.++.+|...+..+ ....|+.+|.+|+ .++|... .+|..+|.||+.. ....+|++.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a----------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT----------ECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH----------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 5588888887665 4567999999999 8899886 8999999999875 235688999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 515 ~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
.++|++++|.++.++..+|.++...++++.|+..|++++.++|+. +..++..+......|+
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-------------------A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-------------------ASLYYYRALVHFHNEK 387 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-------------------HHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999986 5678888888888888
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHhch
Q 002199 595 SEAASSALERINEALSISSCSEKLLEMKADA-LYMLRKYEEAIQLCEHTLP 644 (954)
Q Consensus 595 ~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~-~~~lg~~eeAi~~~ekaL~ 644 (954)
.+ +|++.+++++.++|....+-...-.+ .+-....+.||.+|-+-.+
T Consensus 388 ~~---~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 388 IE---EARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HH---HHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 88 88999999999999876555444444 4555667888887765433
No 209
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=6.5e-06 Score=86.33 Aligned_cols=252 Identities=11% Similarity=0.069 Sum_probs=169.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhH
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKV 579 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~ 579 (954)
.-|+.+|+|..++...++.-... ......+.+++.|+.+|++..-+......- ..| .
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~---------------------l 72 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK-ATP---------------------L 72 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc-CCh---------------------H
Confidence 34566899999998887765544 677788888999999999876655443322 111 1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhcc
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALS--ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADN 657 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~--~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~ 657 (954)
.+....+..+-..+..+ .-+..+.+.+. ....+...+..-|.+++.-+++++|+...+....+.
T Consensus 73 qAvr~~a~~~~~e~~~~---~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE----------- 138 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKK---SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE----------- 138 (299)
T ss_pred HHHHHHHHHhhCcchhH---HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH-----------
Confidence 11111111111111111 22222222222 122334566667889999999999999988744432
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
+..+--.++.++.+++-|...+++..+++.+.. ..+.+.+|..++ ..-+++
T Consensus 139 -----------~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t---------------LtQLA~awv~la---~ggek~ 189 (299)
T KOG3081|consen 139 -----------AAALNVQILLKMHRFDLAEKELKKMQQIDEDAT---------------LTQLAQAWVKLA---TGGEKI 189 (299)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH---------------HHHHHHHHHHHh---ccchhh
Confidence 223345678889999999999999887753221 001122332222 233568
Q ss_pred HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002199 738 TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQ 817 (954)
Q Consensus 738 eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~e 817 (954)
.+|.-+|++.-... +..+.++...|.|++.+++|++|...++.+|..++++++++.++-.+-..+|.-.++...+-
T Consensus 190 qdAfyifeE~s~k~----~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 190 QDAFYIFEELSEKT----PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhHHHHHHHHhccc----CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 89999999987765 66788999999999999999999999999999999999999999999999999887776554
Q ss_pred HHHH
Q 002199 818 RLVS 821 (954)
Q Consensus 818 kAL~ 821 (954)
.-++
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 3333
No 210
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=9.2e-06 Score=100.29 Aligned_cols=260 Identities=17% Similarity=0.079 Sum_probs=193.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-chhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 002199 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS-AAAVCLDRRITIEAADGLQKAQKVTEYI 583 (954)
Q Consensus 505 lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l-~P~~~~~~~~~~ea~~~l~~~~~~~~~l 583 (954)
+++-.+..++|++.+.-+|+..-.|++.-..++++++.++|++.+++||.. ++.- . .+.+..|+
T Consensus 1437 l~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE------------e---eEKLNiWi 1501 (1710)
T KOG1070|consen 1437 LSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE------------E---EEKLNIWI 1501 (1710)
T ss_pred cccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch------------h---HHHHHHHH
Confidence 333445678999999999999999999999999999999999999999973 2211 1 11122233
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 584 NCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 584 ~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
.+......-|.-+ ...+.|++|.+.+ +...+|..|..+|..-+++++|.++|+..++...+...
T Consensus 1502 A~lNlEn~yG~ee---sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~------------ 1565 (1710)
T KOG1070|consen 1502 AYLNLENAYGTEE---SLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK------------ 1565 (1710)
T ss_pred HHHhHHHhhCcHH---HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh------------
Confidence 3333333333222 5667777877765 34567888999999999999999999999987653322
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 664 LARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~ 743 (954)
.|..+|..+++..+-+.|...+.+||+..|...+ +......+++-|+.|+.+.+...
T Consensus 1566 -----vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH------------------v~~IskfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1566 -----VWIMYADFLLRQNEAEAARELLKRALKSLPKQEH------------------VEFISKFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred -----HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh------------------HHHHHHHHHHHhhcCCchhhHHH
Confidence 6888999999999999999999999998886433 22233457888999999999999
Q ss_pred HHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Q 002199 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD--ENYTKAVSRRAALHEMI-RDYTQAASDLQRLV 820 (954)
Q Consensus 744 y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld--P~~~~al~~lA~ly~~l-g~~eeAi~~~ekAL 820 (954)
|+-.+.-. |...++|.-+...-.+.++.+.+...|++++.+. |.....+|.+-.-|.+. |+-+.....=.+|+
T Consensus 1623 fEgll~ay----PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1623 FEGLLSAY----PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHhhC----ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 99999988 7888999999999999999999999999999874 55566666665555554 44333333333444
Q ss_pred HH
Q 002199 821 SI 822 (954)
Q Consensus 821 ~l 822 (954)
+.
T Consensus 1699 EY 1700 (1710)
T KOG1070|consen 1699 EY 1700 (1710)
T ss_pred HH
Confidence 43
No 211
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.62 E-value=1.3e-07 Score=79.75 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 496 SNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 496 ~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999999999999999999999999999999999975
No 212
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.61 E-value=1.2e-07 Score=79.96 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++++.|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467777778888888888888888888888888888888888888888888888888776654
No 213
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.59 E-value=1.2e-06 Score=104.05 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC--------CHHHHHHHH
Q 002199 447 TCEMWRLRGNQAYKNNN---LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG--------RMREALEDC 515 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~---y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg--------~~eeAl~~~ 515 (954)
.+-.++.+|..++..+. +..|+.+|++||+++|++. .+|..++.+|.... +...+...+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a----------~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT----------YAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 45567889998887765 8899999999999999997 78888888876642 345666666
Q ss_pred HHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 002199 516 MMAATV--DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK 593 (954)
Q Consensus 516 ~kALel--~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g 593 (954)
.+++.+ +|..+.+|..+|..+...|++++|...|++++.++|. +..+..++..+...|
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--------------------~~a~~~lG~~~~~~G 467 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--------------------WLNYVLLGKVYELKG 467 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------------HHHHHHHHHHHHHcC
Confidence 776664 6777888888899988899999999999998887763 233444455555555
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHH
Q 002199 594 TSEAASSALERINEALSISSCSEK 617 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~ 617 (954)
+++ +|++.|.+|+.++|..+.
T Consensus 468 ~~~---eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 468 DNR---LAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHH---HHHHHHHHHHhcCCCCch
Confidence 555 455555555555555443
No 214
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.8e-07 Score=95.90 Aligned_cols=130 Identities=27% Similarity=0.318 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 720 ~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.+..+..-|+.|++.++|..|+..|.++|...-.++..++.+|.|+|.|.+.+|+|..||.+|.+|+.++|.+..++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 45567788999999999999999999999998777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH-HhhcCCCCcchhhhhhHHH
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQSAEK-AKQSRSPGRTISSRDLRQA 849 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~-~~~~~~P~~~~~~~~L~~a 849 (954)
|.|++.+.++.+|..+.+..+.++.+....- .....+|++.......+..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~~~~L~~er~~ 210 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKNDKLKLIEERDV 210 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcchHHHHHHHHHH
Confidence 9999999999999999999999977665432 2223467666655444433
No 215
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.7e-08 Score=107.69 Aligned_cols=64 Identities=34% Similarity=0.530 Sum_probs=57.9
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhH---HHHHHHHHHHCCCCCcccccccccCCC
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQ---EQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~---~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
|||++|||.++++..|||+||++||.+||||.+....+ +.++.++|+.|++ +++|+.||++|..
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd-~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSD-EEKRQEYDVYGLE 110 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcC-HHHHHHHHHhhhh
Confidence 89999999999999999999999999999999987654 4677788999997 8999999999853
No 216
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.57 E-value=1e-06 Score=104.52 Aligned_cols=139 Identities=12% Similarity=0.020 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCC
Q 002199 668 WRWRLISKSYFCIGK---LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK--------SGR 736 (954)
Q Consensus 668 ~a~~~Lg~~y~~lG~---~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~--------~g~ 736 (954)
|.+++.|..|+..++ +..|+.+|+++++++|+..... ..++.++.. ..+
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~--------------------A~la~~~~~~~~~~~~~~~~ 399 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQ--------------------AEKALADIVRHSQQPLDEKQ 399 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHH--------------------HHHHHHHHHHHhcCCccHHH
Confidence 456777888876655 7899999999999999885422 111222111 123
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
...|.....+++.+.. .+..+.+|..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|
T Consensus 400 l~~a~~~~~~a~al~~--~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 400 LAALSTELDNIVALPE--LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHhhhccc--CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566666667666521 155678899999999999999999999999999999 5889999999999999999999999
Q ss_pred HHHHHHhhhhHHH
Q 002199 817 QRLVSILENQSAE 829 (954)
Q Consensus 817 ekAL~l~p~~~~~ 829 (954)
++|+.++|....+
T Consensus 477 ~~A~~L~P~~pt~ 489 (517)
T PRK10153 477 STAFNLRPGENTL 489 (517)
T ss_pred HHHHhcCCCCchH
Confidence 9999997765443
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.55 E-value=1.1e-06 Score=95.25 Aligned_cols=105 Identities=9% Similarity=-0.012 Sum_probs=93.6
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 002199 448 CEMWRLRGNQA-YKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN-- 524 (954)
Q Consensus 448 ae~l~~~G~~~-~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~-- 524 (954)
...++..|..+ +..|+|++|+..|++.|...|+.. -...+++.+|.+|+..|++++|+..|++++...|+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 35667777776 678999999999999999999974 11378999999999999999999999999998886
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 525 -FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 -~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.+.+++.+|.++..+|++++|+..|+++++..|+.
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 58899999999999999999999999999999975
No 218
>PRK11906 transcriptional regulator; Provisional
Probab=98.55 E-value=2.7e-06 Score=96.58 Aligned_cols=172 Identities=16% Similarity=0.068 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhcc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEAL---SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADN 657 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL---~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~ 657 (954)
..+..|...+..+..+....|+..+.+++ .++|....+|..+|.|++..-
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~--------------------------- 309 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA--------------------------- 309 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH---------------------------
Confidence 34666777777777777778999999999 899999999999998886541
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
.+|..- ...+..+|+++.+++++++|.++. ++..+|.++...+++
T Consensus 310 --------------~~g~~~-~~~~~~~a~~~A~rAveld~~Da~--------------------a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 310 --------------LHGKSE-LELAAQKALELLDYVSDITTVDGK--------------------ILAIMGLITGLSGQA 354 (458)
T ss_pred --------------HhcCCC-chHHHHHHHHHHHHHHhcCCCCHH--------------------HHHHHHHHHHhhcch
Confidence 001111 223345677777888888877754 455577777777888
Q ss_pred HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhcCHHHHHHHH
Q 002199 738 TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL-HEMIRDYTQAASDL 816 (954)
Q Consensus 738 eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l-y~~lg~~eeAi~~~ 816 (954)
+.|+..|++|+.++ |+.+.+|+.+|.++...|+.++|++.++++++++|.-..+-...-.+ .+-....++|+..|
T Consensus 355 ~~a~~~f~rA~~L~----Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 355 KVSHILFEQAKIHS----TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hhHHHHHHHHhhcC----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 88888888888888 78888888888888888999999999999999988776655554444 44456677777776
Q ss_pred HH
Q 002199 817 QR 818 (954)
Q Consensus 817 ek 818 (954)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 54
No 219
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3e-07 Score=94.48 Aligned_cols=98 Identities=32% Similarity=0.413 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
.+...|+.++...+|..||.+|.+||.++ |..+..|.++|.||+++.+++.+...+.+|++++|+.+.+++.+|..
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~n----P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICIN----PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcC----CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 45567999999999999999999999999 88899999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHhh
Q 002199 803 HEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 803 y~~lg~~eeAi~~~ekAL~l~p 824 (954)
+.....|++||..++++..+..
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHhhccccHHHHHHHHHHHHHh
Confidence 9999999999999999998843
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.53 E-value=1.2e-06 Score=94.99 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=90.0
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 002199 724 HKSAGNEA-FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN---YTKAVSRR 799 (954)
Q Consensus 724 ~~~lG~~~-~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---~~~al~~l 799 (954)
.+..+..+ +..|+|++|+..|+..+...|+. +..+.+++.+|.+|+..|++++|+..|++++...|+ .+++++.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34455554 56799999999999999999654 455789999999999999999999999999998877 58899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|.++..+|++++|+..|+++++.+|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 9999999999999999999999977654
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=98.52 E-value=1.2e-06 Score=86.60 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
..+...+..|.-++..|++++|...|+-....+ +.+...+..||.|+..+++|++|+..|..|..++++++...+.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 345567778999999999999999999998888 7788899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.|.||+.+|+.+.|+.+|+.++..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999999983
No 222
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=3e-05 Score=86.85 Aligned_cols=331 Identities=17% Similarity=0.123 Sum_probs=203.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCC------Cc--HHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA-ATVDP------NF--LKV 528 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA-Lel~P------~~--~~a 528 (954)
+++..++..+...-+-++.+..+.+ .++...+..++..|+|..|.+.+... +.-.| .. --.
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~----------~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif 285 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSS----------MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIF 285 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCc----------HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhee
Confidence 4556666667666666666666555 77788888888888888888876543 12222 22 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-hchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLN-SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~-l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
|.++|.|++++|.|.-+..+|.+||+ ..... ...........+.........|+.+..++..|++- .|.++|.+
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL--~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl---~AfqCf~~ 360 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQL--RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL---LAFQCFQK 360 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHH--hccCCCCcceehhcccchhhHHhhhHHHHhcCCcH---HHHHHHHH
Confidence 56888899999999999999998886 11100 00000001112333344677899999999999998 78899999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccC-------------------------------------------------HHHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRK-------------------------------------------------YEEAIQL 638 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~-------------------------------------------------~eeAi~~ 638 (954)
+....-.+|.+|..+|+|.+...+ .+=|.-+
T Consensus 361 av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vC 440 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVC 440 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHH
Confidence 999888899999999998876321 1223334
Q ss_pred HHHhchhhhhhhhh------hhhcc--------------C---------cc------hhhH-----HHHHHHHHHHHHHH
Q 002199 639 CEHTLPVAEKNFAS------VLADN--------------G---------SV------TYSL-----ARLWRWRLISKSYF 678 (954)
Q Consensus 639 ~ekaL~l~p~~~~~------~~~~~--------------~---------~~------~~~~-----~~l~a~~~Lg~~y~ 678 (954)
++.+|-+-|+.... ..+.. + .. ...+ .+.-++...+.+-+
T Consensus 441 Lrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L 520 (696)
T KOG2471|consen 441 LRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVEL 520 (696)
T ss_pred HHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44444332211000 00000 0 00 0011 11123444566667
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hh--
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL------ST-- 750 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL------~l-- 750 (954)
.+|+.-.|+..-.+.+++..-. ..-....+...|.+++...+..+|+.++.--+ .+
T Consensus 521 ~Lgd~i~AL~~a~kLLq~~~lS----------------~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~ 584 (696)
T KOG2471|consen 521 ELGDPIKALSAATKLLQLADLS----------------KIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPY 584 (696)
T ss_pred HhcChhhHHHHHHHHHhhhhhh----------------hHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccccccc
Confidence 8888888888888887752111 11122334446677777888888888775521 11
Q ss_pred ---------------cc------CCc-----hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 002199 751 ---------------NI------ESR-----PFAAICFCNRAAALQALGQIADAIADCSLAMALDE--NYTKAVSRRAAL 802 (954)
Q Consensus 751 ---------------~~------~~~-----p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP--~~~~al~~lA~l 802 (954)
+| +.. .-....++++|.+|.-+|++++|...+..|..+-+ ..++|....-.+
T Consensus 585 n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyi 664 (696)
T KOG2471|consen 585 NQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYI 664 (696)
T ss_pred chhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 00 000 12345677888888888888888888888877766 456676666667
Q ss_pred HHHhcCHHHHHHHHHHH
Q 002199 803 HEMIRDYTQAASDLQRL 819 (954)
Q Consensus 803 y~~lg~~eeAi~~~ekA 819 (954)
-.++|+...|...+++.
T Consensus 665 dL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 665 DLMLGRSQDALARLKQC 681 (696)
T ss_pred HHhcCCCcchHHHHHhc
Confidence 77888888887776654
No 223
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.0022 Score=72.38 Aligned_cols=361 Identities=15% Similarity=0.059 Sum_probs=209.9
Q ss_pred hhHHHHHHH--HHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 002199 443 AFQETCEMW--RLRGNQ-AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMA 518 (954)
Q Consensus 443 ~~~~~ae~l--~~~G~~-~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kA 518 (954)
..+...++- .++|.. ++-..+++.|...+++|..+...-+.+ ......++..++.+|.... .+..|...++++
T Consensus 39 ~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f---ydvKf~a~SlLa~lh~~~~~s~~~~KalLrka 115 (629)
T KOG2300|consen 39 QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF---YDVKFQAASLLAHLHHQLAQSFPPAKALLRKA 115 (629)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH---HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 344555542 444543 345678888888888888877665521 1334567777888888777 777888888888
Q ss_pred HhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-chhhhhhH---------------HHHHHHHHHHHHHHh
Q 002199 519 ATVDPNFL----KVYMRAAKCHLVLGEIENAQHYYHKLLNS-AAAVCLDR---------------RITIEAADGLQKAQK 578 (954)
Q Consensus 519 Lel~P~~~----~a~~~LA~iy~~lG~~eeAl~~yekaL~l-~P~~~~~~---------------~~~~ea~~~l~~~~~ 578 (954)
+++....+ +..+.|+.++.-..++..|++.+.-..+. ++-..... ....+....+.....
T Consensus 116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~q 195 (629)
T KOG2300|consen 116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQ 195 (629)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 88765543 45667788888888888887764321111 11000000 001111111111111
Q ss_pred HH---------------HHHHH-HHHHHHhcChHHHHHHHHHHHHHHhc-CCC------------CHHHHHHH------H
Q 002199 579 VT---------------EYINC-SGKLLEQKTSEAASSALERINEALSI-SSC------------SEKLLEMK------A 623 (954)
Q Consensus 579 ~~---------------~~l~~-a~~ll~~g~~~~a~eAL~~l~kaL~~-~P~------------~~~~~~~l------A 623 (954)
+. -++.+ ...|+..|+-..+..++..+++.+.. .+. .+....++ +
T Consensus 196 i~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqica 275 (629)
T KOG2300|consen 196 IWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICA 275 (629)
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHh
Confidence 00 01111 11233445555555666666665542 111 11111111 1
Q ss_pred HHH-------HHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 624 DAL-------YMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 624 ~~~-------~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l 696 (954)
.+| +..|-+++|+.+-+++|....+.... +...--.....+-.+-.+..+-.-.|++.+|++.+..+.+.
T Consensus 276 LV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~---d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w 352 (629)
T KOG2300|consen 276 LVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQA---DLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNW 352 (629)
T ss_pred hhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccc---cchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 122 24567788888888887664322110 00000111112223345566777899999999998887664
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHH
Q 002199 697 GSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIA 776 (954)
Q Consensus 697 ~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~e 776 (954)
....+.. +.-....+..+..+|.-...-+.|+.|...|..|+++.. .....+.+-.|+|..|+..++-+
T Consensus 353 ~~r~p~~----------~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~-~~dl~a~~nlnlAi~YL~~~~~e 421 (629)
T KOG2300|consen 353 CTRFPTP----------LLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE-SIDLQAFCNLNLAISYLRIGDAE 421 (629)
T ss_pred HHhCCch----------HHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh-HHHHHHHHHHhHHHHHHHhccHH
Confidence 3333221 111223345566788888889999999999999998752 12345667788999999988765
Q ss_pred HHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 777 DAIADCSLAMALDENY----------TKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 777 eAi~~~ekAL~ldP~~----------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
.-.+.++. +.|.+ ..+++..|...+..+++.+|...+.+.|++.
T Consensus 422 d~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 422 DLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 44333333 44542 4567888889999999999999999999986
No 224
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.00088 Score=80.63 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=83.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHL 537 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~ 537 (954)
....++|.+|+....+.++..|+.. -+....|.+++++|++++|..+++..-...+++...+--+-.||.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~----------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL----------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR 88 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 3567899999999999999999986 777888999999999999998888777788888889999999999
Q ss_pred HcCCHHHHHHHHHHHHhhchh
Q 002199 538 VLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 538 ~lG~~eeAl~~yekaL~l~P~ 558 (954)
.++++++|...|++++..+|.
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc
Confidence 999999999999999999996
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.44 E-value=0.00048 Score=75.74 Aligned_cols=302 Identities=16% Similarity=0.045 Sum_probs=204.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-LKVYMRA 532 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-~~a~~~L 532 (954)
.|.+..-.|+-..|..+-.++-++...+.. +.++..-+.+-+-.|+|+.|.+-|+..+. +|.. .-.+..|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqe--------pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgL 160 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQE--------PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGL 160 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccch--------HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHH
Confidence 344445567778888888777755544431 35666667788888999999988887665 4432 1122222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC
Q 002199 533 AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612 (954)
Q Consensus 533 A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~ 612 (954)
-.--..+|.++-|+.+-+++-...|.. ...+..........|+|+.+.+-++.-.....+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l-------------------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQL-------------------PWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCC-------------------chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 223346788999999988888877753 2233444455667888885444443333334444
Q ss_pred CCCH-----HHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 613 SCSE-----KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 613 P~~~-----~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
+... .++...+..+. .-+...|...-.+++++.|+-.. +-..-+..|++.|+..++-
T Consensus 222 ~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvP-----------------aav~AAralf~d~~~rKg~ 283 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVP-----------------AAVVAARALFRDGNLRKGS 283 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccch-----------------HHHHHHHHHHhccchhhhh
Confidence 4332 12222222222 23577888888888888886644 3445678899999999999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
.+++.+.+..|... ++..|....--+.++.-++++-.+. ...|++......++.
T Consensus 284 ~ilE~aWK~ePHP~-------------------------ia~lY~~ar~gdta~dRlkRa~~L~-slk~nnaes~~~va~ 337 (531)
T COG3898 284 KILETAWKAEPHPD-------------------------IALLYVRARSGDTALDRLKRAKKLE-SLKPNNAESSLAVAE 337 (531)
T ss_pred hHHHHHHhcCCChH-------------------------HHHHHHHhcCCCcHHHHHHHHHHHH-hcCccchHHHHHHHH
Confidence 99999988877432 4555665555566777777665553 223788889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhhhHHH
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMI-RDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l-g~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
.-+.-|++..|..-.+.++.+.|. ..++..|+.+-... |+-.++...+-++++- |.++.|
T Consensus 338 aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A-PrdPaW 398 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA-PRDPAW 398 (531)
T ss_pred HHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC-CCCCcc
Confidence 999999999999999999999886 45677788888776 9999999999999875 444433
No 226
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.43 E-value=2.9e-07 Score=103.69 Aligned_cols=105 Identities=26% Similarity=0.394 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
++.+...++.++..+.|+.|+..|.+||+++|+.. ..+.+++.++++.++|..|+.++.+|++++|...+
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca----------~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K 73 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCA----------IYFANRALAHLKVESFGGALHDALKAIELDPTYIK 73 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce----------eeechhhhhheeechhhhHHHHHHhhhhcCchhhh
Confidence 45677889999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
+|++.|.+.+.++++.+|+..|+....+.|+....
T Consensus 74 ~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 74 AYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred eeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 99999999999999999999999999999986443
No 227
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.42 E-value=1.5e-07 Score=110.91 Aligned_cols=65 Identities=34% Similarity=0.498 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||++||+++++||||++.... ...++.+||++|++ +..|+.||.||..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSD-P~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSN-PKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCC-HHHHHHHhhhccc
Confidence 58999999999999999999999999999999986543 35668899999986 8999999999864
No 228
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=1.7e-05 Score=88.82 Aligned_cols=304 Identities=15% Similarity=0.052 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHH--hcC---
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRI-SLGRMREALEDCMMAA--TVD--- 522 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~-~lg~~eeAl~~~~kAL--el~--- 522 (954)
..+...+-..+..+.|+..++.+...-.+...+. .++++++.+.+ +.|.+. -...++... ..+
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~----------~v~~n~av~~~~kt~~tq-~~~ll~el~aL~~~~~~ 86 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSG----------PVLHNRAVVSYYKTGCTQ-HSVLLKELEALTADADA 86 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhcccccc----------ceeeehhhHHHHhcccch-hHHHHHHHHHHHHhhcc
Confidence 3455566777889999999999988888877776 55677766544 444432 122222211 111
Q ss_pred ----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002199 523 ----------PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ 592 (954)
Q Consensus 523 ----------P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~ 592 (954)
.....++++.|.+|+...++..|++........-.. +.........+.....++..
T Consensus 87 ~~~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~--------------le~~~aa~v~~l~~~l~~~t 152 (696)
T KOG2471|consen 87 PGDVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTES--------------LESSSAASVTLLSDLLAAET 152 (696)
T ss_pred ccchhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 123567889999999999999998887665543111 00000001111111111111
Q ss_pred cChHHHHHHHHHHHHHHhc-------------------CC-----------CCHHHHHHHHHHHHHccCHHHHHHHHHHh
Q 002199 593 KTSEAASSALERINEALSI-------------------SS-----------CSEKLLEMKADALYMLRKYEEAIQLCEHT 642 (954)
Q Consensus 593 g~~~~a~eAL~~l~kaL~~-------------------~P-----------~~~~~~~~lA~~~~~lg~~eeAi~~~eka 642 (954)
.+.+++..-+.++.+.+.. .| -...+.......|+++.+..-+....+.+
T Consensus 153 ~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~v 232 (696)
T KOG2471|consen 153 SQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHV 232 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhh
Confidence 1112111111122111110 01 01223444455666777777776666666
Q ss_pred chhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCcchhhHHHHHHHHHHHHHHHH
Q 002199 643 LPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ-VGSISDRYGSEILESSMSLAGTVRAL 721 (954)
Q Consensus 643 L~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~-l~p~~~~~~~~~l~~~~~l~~~~~~~ 721 (954)
..+..+... +.++.+..++..|++.+|.+.+...-- ..+... +.......
T Consensus 233 mn~a~~s~~-----------------~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~------------~T~q~~~c 283 (696)
T KOG2471|consen 233 MNIAQDSSM-----------------ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT------------ITPQLSSC 283 (696)
T ss_pred hhhcCCCcH-----------------HHHHHHHHHHHhcchHHHHHHHHhcccccccCcc------------ccchhhhh
Confidence 655543322 456778999999999999988865311 111100 00111223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--------c-----CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALS-TN--------I-----ESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~-l~--------~-----~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
..+.++|.++++.+.|.-++.+|.+||+ .+ | -.......++||.|..|+..|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 4578899999999999999999999996 21 1 01134678899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 002199 788 LDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 788 ldP~~~~al~~lA~ly~~l 806 (954)
..-.++..|+++|.+.++.
T Consensus 364 vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCcHHHHHHHHHHHHH
Confidence 9999999999999988754
No 229
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.40 E-value=4.5e-07 Score=73.81 Aligned_cols=50 Identities=46% Similarity=0.673 Sum_probs=42.6
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCC
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESP 916 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~ 916 (954)
+||++|||.+.++..+|+++||+++++||||+... . .....+.+++++|+
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999985 2 34456667777764
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.39 E-value=7.3e-05 Score=78.95 Aligned_cols=188 Identities=15% Similarity=0.090 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF- 525 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~- 525 (954)
-+..|+..|...++.|+|.+|+..|+.+....|..+.+ -.+...++.++++.++|++|+..+++-+.+.|++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 46789999999999999999999999999999987622 4788899999999999999999999999999876
Q ss_pred --HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHhc
Q 002199 526 --LKVYMRAAKCHLVL--------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKA--QKVTEYINCSGKLLEQK 593 (954)
Q Consensus 526 --~~a~~~LA~iy~~l--------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~--~~~~~~l~~a~~ll~~g 593 (954)
..+++.+|.+++.. .-..+|+..|+..+...|+..... .+...+..+ .....-+..+.-|+..+
T Consensus 106 n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~----dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 106 NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP----DAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888887754 224678888999999999764332 222222222 22333455677788888
Q ss_pred ChHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 594 TSEAASSALERINEALSISSCS---EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~---~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
.+- .|+..++.+++..|+. .+++..+..+|..+|-.++|... .++|..+..+
T Consensus 182 ~~~---AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~ 236 (254)
T COG4105 182 AYV---AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPD 236 (254)
T ss_pred ChH---HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCC
Confidence 888 7888888888876654 67888889999999999988654 4455555433
No 231
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.39 E-value=5.1e-06 Score=79.03 Aligned_cols=99 Identities=18% Similarity=0.035 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---c
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN---F 525 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~---~ 525 (954)
++++++|..+-..|+.++|+.+|++++....... ....++..+|.+|..+|++++|+..+++++...|+ +
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc
Confidence 5688999999999999999999999999765543 34579999999999999999999999999999888 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
..+...++.++..+|++++|+..+-.++.
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888899999999999999999988765
No 232
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.39 E-value=9e-07 Score=75.12 Aligned_cols=68 Identities=18% Similarity=0.088 Sum_probs=55.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
++..|+|++|+..|++++..+|++. .+++.+|.||+..|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP----------EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH----------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 3677888888888888888888886 7888888888888888888888888888888887777776653
No 233
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.3e-07 Score=92.67 Aligned_cols=66 Identities=32% Similarity=0.491 Sum_probs=57.7
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|-|+|||+++.+++.||||+||+|.+++||||.+. ....+.+.+|+..+++ ...|.-|..||.+
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD-~~sreN~ekYG~P 167 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTD-KKSRENWEKYGNP 167 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcc-hhhHHHHHHhCCC
Confidence 5678999999999999999999999999999999654 3445788899999997 7788899999966
No 234
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.36 E-value=6.2e-07 Score=74.42 Aligned_cols=51 Identities=45% Similarity=0.640 Sum_probs=44.5
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-----hhHHHHHHHHHHHCCC
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-----YDQEQEIRKATKESPQ 917 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-----~~~~e~~~~~~~~l~~ 917 (954)
+||++|||.++++..+|+++|+++++++|||+... ......+.++++.|.+
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 69999999999999999999999999999999883 2445677788888865
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.36 E-value=7.8e-06 Score=79.19 Aligned_cols=106 Identities=15% Similarity=0.058 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-- 525 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-- 525 (954)
+..++..|...++.|+|.+|++.|+......|..+.+ ..+.+.++.+|+..++|++|+..+++.|+++|++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya-------~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA-------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 4678999999999999999999999999999886532 3788999999999999999999999999999876
Q ss_pred -HHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhchhhh
Q 002199 526 -LKVYMRAAKCHLVLGE---------------IENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 526 -~~a~~~LA~iy~~lG~---------------~eeAl~~yekaL~l~P~~~ 560 (954)
..+++.+|.+++.+.. ..+|+..|++++...|+..
T Consensus 83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 5689999999999887 8899999999999999763
No 236
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.35 E-value=2e-06 Score=74.14 Aligned_cols=70 Identities=23% Similarity=0.219 Sum_probs=55.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 455 G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
...|++.++|++|+.++++++.++|.+. .+|..+|.++..+|++.+|+.+|+++++..|+...+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~----------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP----------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc----------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4567788888888888888888888876 788888888888888888888888888888887776665543
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.34 E-value=1.6e-05 Score=74.59 Aligned_cols=95 Identities=23% Similarity=0.284 Sum_probs=87.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 002199 726 SAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY----TKAVSRRAA 801 (954)
Q Consensus 726 ~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~----~~al~~lA~ 801 (954)
..|..+...|+.+.|++.|.++|.+. |..+.+|+|+|.++.-+|+.++|+.++++|+++.... ..++..+|.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLA----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhc----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 36888889999999999999999999 8899999999999999999999999999999997543 468899999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhh
Q 002199 802 LHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 802 ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+|..+|+.+.|..+|+.+-++-.
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCC
Confidence 99999999999999999998843
No 238
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=5.8e-06 Score=85.33 Aligned_cols=108 Identities=24% Similarity=0.318 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------ccCC------chhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALST--------NIES------RPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l--------~~~~------~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
..+..+...|+-++.+|+|.+|+..|..|+.. .|.. ......++.|.+.|++..|+|-++++.+..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 33456777899999999999999999999764 1211 133456789999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 785 AL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+|..+|.+..||+.+|.++...=+..+|..+|.++|+++|..
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999997654
No 239
>PHA02624 large T antigen; Provisional
Probab=98.31 E-value=3.7e-07 Score=106.73 Aligned_cols=81 Identities=14% Similarity=0.263 Sum_probs=67.0
Q ss_pred CcchhhhhccccCC--CHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccc--ccc---CCCCCCCCC
Q 002199 865 PLDFYLILGVKASD--TAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSS--DAY---GYACRSSRR 937 (954)
Q Consensus 865 ~~dyYkiLgv~~~a--~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~y--D~~---g~~~~~~~~ 937 (954)
..++|++|||++++ +..+||+|||++|++|||||+.+....+++.++++++.+ +..+..| |.. |. ...+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d-~~k~~r~~fd~~~~~~v--~~~~~ 86 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQE-GVKSARQSFGTQDSSEI--PTYGT 86 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhc-HHHhhhcccccccccCC--CCCcc
Confidence 34689999999999 999999999999999999999888888999999999986 6666666 433 22 23466
Q ss_pred CcccccccccC
Q 002199 938 QSRQDNWKTYG 948 (954)
Q Consensus 938 ~~~~~~~~~~~ 948 (954)
+.|.++|+.|.
T Consensus 87 ~~w~~ww~~f~ 97 (647)
T PHA02624 87 PEWEQWWEEFN 97 (647)
T ss_pred ccHHHHHHHhh
Confidence 77999998874
No 240
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.31 E-value=1.3e-05 Score=76.33 Aligned_cols=98 Identities=17% Similarity=0.050 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN---YTKAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---~~~al~~l 799 (954)
+++++|..+...|+.++|+.+|++++...... +....++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~-~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG-ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46678999999999999999999999975332 566789999999999999999999999999999888 78888899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 002199 800 AALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~ 821 (954)
+.++..+|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999877764
No 241
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=1.3e-05 Score=91.48 Aligned_cols=119 Identities=18% Similarity=0.085 Sum_probs=104.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
-.++...++++.|+..+++..+.+|.. ...++.+++..++..+|+..+.+++...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev-----------------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~-- 230 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEV-----------------------AVLLARVYLLMNEEVEAIRLLNEALKEN-- 230 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcH-----------------------HHHHHHHHHhcCcHHHHHHHHHHHHHhC--
Confidence 344556789999999999998877632 2236888888999999999999999888
Q ss_pred CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 754 SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 754 ~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
|.++.++...|..++..++++.|+..+++++.+.|+....|+.||.+|..+|+++.|+..++.+
T Consensus 231 --p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 231 --PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 7779999999999999999999999999999999999999999999999999999999887744
No 242
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.29 E-value=1.9e-06 Score=75.39 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALD-------ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld-------P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
|..+.++.++|.+|..+|+|++|+.+|++++.+. |..+.++.++|.++..+|++++|+++|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4555666666666666666666666666666541 1224566666777777777777777777776664
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.28 E-value=1.3e-05 Score=77.63 Aligned_cols=104 Identities=21% Similarity=0.162 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT---KAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~---~al~~l 799 (954)
.++..|...++.|+|.+|++.|+......|-. +....+.+.++.+|+..+++++|+..+++-|+++|.++ .+++.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 46678999999999999999999999888654 66778999999999999999999999999999999874 689999
Q ss_pred HHHHHHhcC---------------HHHHHHHHHHHHHHhhhhH
Q 002199 800 AALHEMIRD---------------YTQAASDLQRLVSILENQS 827 (954)
Q Consensus 800 A~ly~~lg~---------------~eeAi~~~ekAL~l~p~~~ 827 (954)
|.+++.+.. ..+|...|+++++..|+..
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 999999887 8999999999999977643
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.28 E-value=8.1e-06 Score=86.83 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF---LK 527 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~ 527 (954)
+|..|..++..|+|..|+..|..-|+..|+... .+.+++.||.+++.+|+|+.|...|..++.-.|+. ++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 899999999999999999999999999999752 35899999999999999999999999999988765 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+++.+|.|...+|+.++|...|+++++..|..
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999999999999999975
No 245
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=1e-05 Score=92.21 Aligned_cols=119 Identities=23% Similarity=0.333 Sum_probs=102.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC
Q 002199 533 AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612 (954)
Q Consensus 533 A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~ 612 (954)
-.++...++++.|+..|++..+.+|+. .+.++..++..++.. +|+..+.+++...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev----------------------~~~LA~v~l~~~~E~---~AI~ll~~aL~~~ 230 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEV----------------------AVLLARVYLLMNEEV---EAIRLLNEALKEN 230 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcH----------------------HHHHHHHHHhcCcHH---HHHHHHHHHHHhC
Confidence 445566789999999999999988853 233455555555444 8999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 613 SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK 692 (954)
Q Consensus 613 P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~k 692 (954)
|.+..++...|..++..++++.|+.+.++++.+.|.++. .|+.|+.+|..+|+++.|+..++.
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~-----------------~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE-----------------TWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH-----------------HHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999999999999999999999999998876 799999999999999999988875
Q ss_pred H
Q 002199 693 L 693 (954)
Q Consensus 693 a 693 (954)
+
T Consensus 294 ~ 294 (395)
T PF09295_consen 294 C 294 (395)
T ss_pred C
Confidence 4
No 246
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00048 Score=72.21 Aligned_cols=243 Identities=17% Similarity=0.194 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNF-------------------LKVYMRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-------------------~~a~~~LA~iy~~lG~~eeAl~~yeka 552 (954)
..+|..+-.++.++..+++|...+...-++|..+ ....+..|.+...+|...+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4778888888999999999988877666654211 122344566777778777776666554
Q ss_pred HhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 002199 553 LNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKY 632 (954)
Q Consensus 553 L~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~ 632 (954)
+.. ......-++.+..++ ..+..+++-+ ..+.+.++.++.-+++|
T Consensus 149 ~~~---------------------------V~~ii~~~e~~~~~E--Ssv~lW~KRl------~~Vmy~~~~~llG~kEy 193 (366)
T KOG2796|consen 149 KTV---------------------------VSKILANLEQGLAEE--SSIRLWRKRL------GRVMYSMANCLLGMKEY 193 (366)
T ss_pred HHH---------------------------HHHHHHHHHhccchh--hHHHHHHHHH------HHHHHHHHHHHhcchhh
Confidence 432 111222222222211 3444444433 24567778888899999
Q ss_pred HHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 002199 633 EEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSM 712 (954)
Q Consensus 633 eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~ 712 (954)
.-.+..+.++++.+|..... ....||.+.++.|+.+.|..+++...+...
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~----------------L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-------------- 243 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQ----------------LLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-------------- 243 (366)
T ss_pred hhhHHHHHHHHHhCCcccHH----------------HHHHHHHHHHhcccHHHHHHHHHHHHHHHh--------------
Confidence 99999999999877533221 234678888999999999998887653211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 002199 713 SLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY 792 (954)
Q Consensus 713 ~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~ 792 (954)
.+.........+.+.+.++.-+++|..|...|.+++..+ +.++.+.++.|.|++.+|+..+|++..+.++...|..
T Consensus 244 kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D----~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 244 KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD----PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC----CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 111122334566677888888889999999999888888 7788888889999999999999999999998888864
Q ss_pred H---HHHHHHHHHH
Q 002199 793 T---KAVSRRAALH 803 (954)
Q Consensus 793 ~---~al~~lA~ly 803 (954)
. ..++++-.+|
T Consensus 320 ~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 320 YLHESVLFNLTTMY 333 (366)
T ss_pred chhhhHHHHHHHHH
Confidence 2 3344444443
No 247
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.25 E-value=0.001 Score=73.30 Aligned_cols=266 Identities=15% Similarity=0.096 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT--RISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~--y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
-.+...+...+-.|+|+.|..-|+..+. +|.. ..+..+|.. -..+|.++-|+.+.+.+.+..|...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-----------RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~ 188 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-----------RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP 188 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-----------HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc
Confidence 3445566777889999999999997765 5553 344444443 3478999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNS---AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l---~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
+++...-...+..|+++.|++..+..... .++.. .-.+...+...+..++.. +.. .|..
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a--------------eR~rAvLLtAkA~s~lda-dp~---~Ar~ 250 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA--------------ERSRAVLLTAKAMSLLDA-DPA---SARD 250 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH--------------HHHHHHHHHHHHHHHhcC-ChH---HHHH
Confidence 99988888899999999999999876552 11110 000111112222222222 222 6778
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
...+++++.|+....-..-+..|+..|+..++-.+++.+.+..|.- .++.+|....--
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP----------------------~ia~lY~~ar~g 308 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP----------------------DIALLYVRARSG 308 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh----------------------HHHHHHHHhcCC
Confidence 8888999999999999999999999999999999999999988743 244555544444
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
+.++.-++++-.+....++ ........+...+..|+|..|...-+.+....| ...+|.
T Consensus 309 dta~dRlkRa~~L~slk~n-----------------naes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-----res~~l 366 (531)
T COG3898 309 DTALDRLKRAKKLESLKPN-----------------NAESSLAVAEAALDAGEFSAARAKAEAAAREAP-----RESAYL 366 (531)
T ss_pred CcHHHHHHHHHHHHhcCcc-----------------chHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-----hhhHHH
Confidence 5566666665443221111 123444567888899999999999999998873 345666
Q ss_pred HHHHHHHHh-cCHHHHHHHHHHHHHh
Q 002199 764 NRAAALQAL-GQIADAIADCSLAMAL 788 (954)
Q Consensus 764 ~lA~~y~~l-g~~eeAi~~~ekAL~l 788 (954)
.++.+.... |+-.++..++.+++.-
T Consensus 367 LlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 367 LLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhcC
Confidence 678777665 9999999999999874
No 248
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.24 E-value=1.4e-06 Score=81.02 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=47.3
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESP 916 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~ 916 (954)
..++|++|||.++++..+|+++||+++++||||+.......+++.+++++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999877778889999998873
No 249
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00054 Score=72.24 Aligned_cols=257 Identities=11% Similarity=0.059 Sum_probs=170.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
+.+|-.|+|..+|..-++.-... ... .....++.+|+.+|+|..-+......- .....+...++..
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~----------e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~ 81 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDV----------ELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEY 81 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chh----------HHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHH
Confidence 45677899998887766554433 222 677778889999999876665543332 1223344445554
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
+..-++.+.-+....+.+...... ........-+..++..+++++|.+++.. -..
T Consensus 82 ~~~e~~~~~~~~~l~E~~a~~~~~-----------------sn~i~~l~aa~i~~~~~~~deAl~~~~~--------~~~ 136 (299)
T KOG3081|consen 82 LELESNKKSILASLYELVADSTDG-----------------SNLIDLLLAAIIYMHDGDFDEALKALHL--------GEN 136 (299)
T ss_pred hhCcchhHHHHHHHHHHHHhhccc-----------------hhHHHHHHhhHHhhcCCChHHHHHHHhc--------cch
Confidence 444444444443333322211100 0012234446677788899955544432 234
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH----HcCCHHHHHHHHH
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF----CIGKLEVALDLLQ 691 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~----~lG~~eeAl~~l~ 691 (954)
.++...--.++.++.+.+-|...++++.+++.+. .+..||.++. ..+++.+|.-+|+
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~-------------------tLtQLA~awv~la~ggek~qdAfyife 197 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA-------------------TLTQLAQAWVKLATGGEKIQDAFYIFE 197 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-------------------HHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 5566677789999999999999999999988654 2333444444 3346889999999
Q ss_pred HHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH
Q 002199 692 KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 692 kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~ 771 (954)
+.-...+..+ ..+..++.+.+.+++|++|...++.||..+ +..+..+.|+-.+-..
T Consensus 198 E~s~k~~~T~--------------------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd----~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 198 ELSEKTPPTP--------------------LLLNGQAVCHLQLGRYEEAESLLEEALDKD----AKDPETLANLIVLALH 253 (299)
T ss_pred HHhcccCCCh--------------------HHHccHHHHHHHhcCHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHH
Confidence 8876433332 245567899999999999999999999998 7789999999999999
Q ss_pred hcCHHHHHHH-HHHHHHhCCCCHH
Q 002199 772 LGQIADAIAD-CSLAMALDENYTK 794 (954)
Q Consensus 772 lg~~eeAi~~-~ekAL~ldP~~~~ 794 (954)
+|.-.++... +.+....+|+++.
T Consensus 254 ~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred hCCChHHHHHHHHHHHhcCCcchH
Confidence 9987776654 4555566787764
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.24 E-value=0.0004 Score=73.49 Aligned_cols=189 Identities=17% Similarity=0.139 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSC---SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~---~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
+..++..+...+..|+|+ +|+..|+.+....|. ...+.+.++.++++.++|++|+...++-+.+.|.+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~---~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~--- 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYE---EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA--- 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh---
Confidence 567899999999999999 788888888777654 57899999999999999999999999999999987542
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIGK--------LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG~--------~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~l 727 (954)
-+++++.|.+++..=+ ..+|+..|+..++..|+..-.. +....+..+.. ..+..-...
T Consensus 108 -----------dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~-dA~~~i~~~~d--~LA~~Em~I 173 (254)
T COG4105 108 -----------DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP-DAKARIVKLND--ALAGHEMAI 173 (254)
T ss_pred -----------hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHHH--HHHHHHHHH
Confidence 2467788888763322 4578888889999888775522 11111111111 111112335
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
|..|.+.|.|..|+..++.+++.-++. +....++..+..+|..+|-.++|... .++|..+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t-~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDT-SAVREALARLEEAYYALGLTDEAKKT-AKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhc
Confidence 667777777777777777777664322 44555666666677777776666544 3344443
No 251
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=5.4e-06 Score=71.36 Aligned_cols=68 Identities=28% Similarity=0.329 Sum_probs=41.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 729 NEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 729 ~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
.+|+..++|++|++++++++.++ |.++.++..+|.++..+|++.+|+..|++++++.|++..+...++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45556666666666666666666 555666666666666666666666666666666666655544443
No 252
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.0001 Score=86.82 Aligned_cols=82 Identities=16% Similarity=0.054 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
|.--|..+...|+.+.|+.+|..|-. |+.+-.++.-+|+.++|-+..++ ..+..|.|.+|+.|
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D------------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD------------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh------------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHh
Confidence 34457788889999999999988743 33445666678899988766554 56778899999999
Q ss_pred HHhcCHHHHHHHHHHHHHH
Q 002199 804 EMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l 822 (954)
...|+..+|+..|.+|-..
T Consensus 978 En~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 9999999999999877555
No 253
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.20 E-value=0.00073 Score=84.23 Aligned_cols=219 Identities=16% Similarity=0.110 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCc----HHHHHHHHHHHHHc
Q 002199 465 TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT-VDPNF----LKVYMRAAKCHLVL 539 (954)
Q Consensus 465 ~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe-l~P~~----~~a~~~LA~iy~~l 539 (954)
.+..+-|.+.+..+|+.. ..|...-..++.+++.++|.+.+++||. +++.. ...|..+-++...-
T Consensus 1441 pesaeDferlvrssPNSS----------i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSS----------ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred CcCHHHHHHHHhcCCCcc----------hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh
Confidence 345678899999999987 8999999999999999999999999996 44433 33444444444445
Q ss_pred CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHH
Q 002199 540 GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLL 619 (954)
Q Consensus 540 G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~ 619 (954)
|.-+.-.+.|++|.+.... ...+..+...|..-..++ +|.++|+..++...+...+|
T Consensus 1511 G~eesl~kVFeRAcqycd~--------------------~~V~~~L~~iy~k~ek~~---~A~ell~~m~KKF~q~~~vW 1567 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDA--------------------YTVHLKLLGIYEKSEKND---EADELLRLMLKKFGQTRKVW 1567 (1710)
T ss_pred CcHHHHHHHHHHHHHhcch--------------------HHHHHHHHHHHHHhhcch---hHHHHHHHHHHHhcchhhHH
Confidence 6666777888888775432 344666777777777888 67778888887777889999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 620 EMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 620 ~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
.++|..++...+-++|..++.+||+.-|.... +-.....+.+-++.|+.+.+..+|+-.+..+|.
T Consensus 1568 ~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH---------------v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1568 IMYADFLLRQNEAEAARELLKRALKSLPKQEH---------------VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhcchhhh---------------HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 99999999999999999999999999987311 113345688899999999999999999988775
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 700 SDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 700 ~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
-.. .|.-....-.+.++.+.+...|++++.+.
T Consensus 1633 RtD--------------------lW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1633 RTD--------------------LWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred chh--------------------HHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 433 45555666678899999999999999875
No 254
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.20 E-value=3.2e-05 Score=87.83 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...|..+++|.++|..|+..|+|++|+.+|++||+++|++.. ...+|+|+|.||..+|++++|+.++++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-------A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-------AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356888999999999999999999999999999999999851 0135999999999999999999999999998
Q ss_pred C
Q 002199 522 D 522 (954)
Q Consensus 522 ~ 522 (954)
.
T Consensus 142 s 142 (453)
T PLN03098 142 Y 142 (453)
T ss_pred c
Confidence 3
No 255
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.20 E-value=3.8e-06 Score=71.25 Aligned_cols=65 Identities=25% Similarity=0.168 Sum_probs=36.3
Q ss_pred HHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 732 FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 732 ~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..|+|++|+..|++++..+ |.+..+++.+|.+|...|++++|...+++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555556666666655555 455555555556666666666666666555555555555444444
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.19 E-value=1.8e-05 Score=84.32 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY---TKAVSRRA 800 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~---~~al~~lA 800 (954)
+++.+..++..|+|..|...|..-+...|.. +..+.+++.||.+++.+|+|++|...|..++.-.|+. +++++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5667888899999999999999999998766 6788999999999999999999999999999987765 78899999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.+...+|+.++|...|+++++-+|+..-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999776543
No 257
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.18 E-value=0.0085 Score=73.53 Aligned_cols=350 Identities=11% Similarity=-0.019 Sum_probs=205.8
Q ss_pred hhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 443 AFQETCEMWRLRGNQAY-KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~-~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
.....+.....+|..++ ...+++.|..++++++.+...+. ..+....+.+.++.+|.+.+... |+..++++++.
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~----~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~ 128 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR----LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED 128 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc----hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence 34567888899999988 78999999999999999886632 12223556667789999888888 99999999987
Q ss_pred CCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 522 DPN---F-LKVYMRA--AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 522 ~P~---~-~~a~~~L--A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
... . ....+++ ...+...+++..|++.++.+..+.... .+ ....+...+..+...+..+..
T Consensus 129 ~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d------------~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 129 SETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GD------------PAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred HhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CC------------HHHHHHHHHHHHHHHhcCCCc
Confidence 544 2 2222232 333333479999999999988754210 01 111233344445555566656
Q ss_pred HHHHHHHHHHHHHHh---cCC----CCHHHHHHH--HHHHHHccCHHHHHHHHHHhch---hhhhhh--hh------hhh
Q 002199 596 EAASSALERINEALS---ISS----CSEKLLEMK--ADALYMLRKYEEAIQLCEHTLP---VAEKNF--AS------VLA 655 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~---~~P----~~~~~~~~l--A~~~~~lg~~eeAi~~~ekaL~---l~p~~~--~~------~~~ 655 (954)
+++.+.+........ .+| ....++..+ --+++..|++..+...+++.-+ ...... .. ...
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 533333332211111 111 112233333 3356677887777666554432 221111 00 000
Q ss_pred c---------c-Ccc----hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------cchhhHHHHHHHHH
Q 002199 656 D---------N-GSV----TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSIS-------DRYGSEILESSMSL 714 (954)
Q Consensus 656 ~---------~-~~~----~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~-------~~~~~~~l~~~~~l 714 (954)
. . ..+ +.....+..|..-|..+...+..++|.++++++++..... .......+.....+
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 0 0 000 1122223456666888888888889999998887742211 11111111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-----chhhHHHHHHHHHHHHHhcCHHHHHHHHH------
Q 002199 715 AGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-----RPFAAICFCNRAAALQALGQIADAIADCS------ 783 (954)
Q Consensus 715 ~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-----~p~~a~~~~~lA~~y~~lg~~eeAi~~~e------ 783 (954)
.... ....+...+...+-.+++..|......+....... ....+.+++..|..+...|+.+.|+..|.
T Consensus 356 ~~~l-~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 356 LRYL-QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHH-HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 1111 22344557888899999999999999887664221 23568889999999999999999999998
Q ss_pred --HHHHhCCCC---HHHHHHHHHHHHHhcCHHH
Q 002199 784 --LAMALDENY---TKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 784 --kAL~ldP~~---~~al~~lA~ly~~lg~~ee 811 (954)
.+....+.. .-+..++..++...+.-..
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 333334332 3455666777766665333
No 258
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.18 E-value=3.6e-06 Score=73.60 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
+|..+..+..+|..|+..|+|++|+.+|++++++..... .....++.++.++|.+|..+|++++|++.+++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG---DDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367889999999999999999999999999998721111 112235889999999999999999999999999876
No 259
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.18 E-value=2.1e-06 Score=96.94 Aligned_cols=102 Identities=30% Similarity=0.432 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+...++.++..+.|+.|+..|.+||+++ |+.+.++.+++.++.+.++|..|+.++.+||+++|.+..+|+.+|.++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ld----pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELD----PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcC----CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 4457888899999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 804 EMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
..++++.+|...|+....+.|++...
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 99999999999999999996655543
No 260
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=5.7e-06 Score=93.83 Aligned_cols=68 Identities=24% Similarity=0.191 Sum_probs=50.2
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA---VSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~a---l~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.|..+..|+++|.+|..+|+|++|+..|+++|+++|++..+ |+++|.+|..+|++++|+.+|++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36677777777777777777777777777777777777644 777777777777777777777777776
No 261
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00011 Score=76.71 Aligned_cols=139 Identities=10% Similarity=0.050 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
..+.+..++...++|.-.+..+.+.++.+|.... .....+|.+.++.|+.+.|..+|+..-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p-------------------~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP-------------------QLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH-------------------HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4566778888999999999999999997754433 123457999999999999999999654
Q ss_pred hhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 749 STNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 749 ~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+.+. +.......++.+.+.+|.-.++|.+|...|.+++..||.++.+..+.|.|++.+|+..+|++.++.+++++|..
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 4321 12246677888999999999999999999999999999999999999999999999999999999999997753
No 262
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.2e-06 Score=90.48 Aligned_cols=63 Identities=38% Similarity=0.525 Sum_probs=56.3
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCccccccccc
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAY 928 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~ 928 (954)
..+||.+|||.++++..+|+++||+++++||||++... .....|.+++.+|++ +..|+.||..
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd-~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD-PERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhC-HHHHHHhhhh
Confidence 56899999999999999999999999999999998754 445678899999986 8899999986
No 263
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.13 E-value=0.00022 Score=81.51 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=84.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
-.+..+|+..+|+.||..++-..|.... -.++..+|.++.+.|...+|--.+..|+.-.|....-++.+|.+
T Consensus 221 ~YWR~~G~~~~A~~Ca~~a~hf~~~h~k--------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i 292 (886)
T KOG4507|consen 221 FYWRIKGEPYQAVECAMRALHFSSRHNK--------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNI 292 (886)
T ss_pred HHHHHcCChhhhhHHHHHHhhhCCcccc--------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHH
Confidence 3344679999999999999999877542 27888999999999999999999999999888888889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhh
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+..++.|...+..|..+++..|..
T Consensus 293 ~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 293 YAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred HHHHhhhhhhhhhhhhhhccCcch
Confidence 999999999999999999988854
No 264
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.13 E-value=3.9e-06 Score=90.77 Aligned_cols=108 Identities=20% Similarity=0.308 Sum_probs=100.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.+.+..+.+......+..++..|.++.||+.|..+|.++|... .+|..++.+++.+++...|+.+|..|+
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a----------~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLA----------ILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchh----------hhcccccceeeeccCCchhhhhhhhhh
Confidence 4556667777888889999999999999999999999999986 999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
+++|+....|-.+|.+...+|++++|..++..+++++-
T Consensus 176 ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 176 EINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred ccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999754
No 265
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.0028 Score=76.44 Aligned_cols=193 Identities=17% Similarity=0.069 Sum_probs=130.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|...-+....|..+++.|++++|..+++..-...+++. ..+--+-.||..++++++|...|++++..+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~----------~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~ 107 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD----------LTLQFLQNVYRDLGKLDEAVHLYERANQKY 107 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch----------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 3455666777889999999999999988776666666654 788889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhH--------------------HHHHHHHHHHH-------H
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDR--------------------RITIEAADGLQ-------K 575 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~--------------------~~~~ea~~~l~-------~ 575 (954)
|. .+.++.+-.+|.+.+.|.+=.+.--+.-+.-|....-. ..+.-+....+ +
T Consensus 108 P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 108 PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 99 88888899999998888754443333333444332111 11111111111 1
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINE--ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k--aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
.....+..-....+..++.++ +|++.+.. +-...+.+..+.......+..+++|.+-.++..+++..++++
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~---eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQ---EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred cchHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 112233333344455677788 55555522 223345555566677788888899998888888888888776
No 266
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0014 Score=67.78 Aligned_cols=195 Identities=16% Similarity=0.131 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
...+.++.+..-|+.|--.++|..|=..|-++-...-... .....+..|...+.||-+. +..+|+.++++++++.
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~----skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIy 103 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG----SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIY 103 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHH
Confidence 4456677777778888888888888888888876543322 1123356777777776655 8889999988888765
Q ss_pred CCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 523 PNF------LKVYMRAAKCHLVL-GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 523 P~~------~~a~~~LA~iy~~l-G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
.+. +.-+..+|.+|..- .++++|+.+|+++-+. +...
T Consensus 104 t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~----------------------------------yk~e-- 147 (288)
T KOG1586|consen 104 TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY----------------------------------YKGE-- 147 (288)
T ss_pred HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH----------------------------------Hcch--
Confidence 432 12233444444432 4555555555544332 2111
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 596 EAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
+.... .-..++..|..-..+++|.+||..|+++....-++.-. ..+... .++.-|.
T Consensus 148 ----es~ss----------ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL--------Kys~Kd--yflkAgL 203 (288)
T KOG1586|consen 148 ----ESVSS----------ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL--------KYSAKD--YFLKAGL 203 (288)
T ss_pred ----hhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH--------HhHHHH--HHHHHHH
Confidence 11111 11234455677778899999999999987765444211 111111 3445688
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 676 SYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 676 ~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
+++...+.-.+...+++...++|....
T Consensus 204 Chl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 204 CHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 888889998899999999999997765
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.97 E-value=0.0071 Score=71.54 Aligned_cols=170 Identities=16% Similarity=0.082 Sum_probs=119.0
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCC
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF----CIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~----~lG~~eeAl~~l~kal~l~p 698 (954)
-.+.--.|+-+.++..+.++.+...-... -..+..+ .|+..-..+. .....+.|.+.+...++..|
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~---------la~L~LL-~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP 264 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSP---------LAALVLL-WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP 264 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchH---------HHHHHHH-HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC
Confidence 34444568999999999988663211100 0111222 2222222222 24567888899999888888
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHH
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADA 778 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeA 778 (954)
+.. .-+...|.++...|+.++|++.|++++.....-+.....+++.+|.++..+.+|++|
T Consensus 265 ~s~--------------------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 265 NSA--------------------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CcH--------------------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 653 245568999999999999999999998654444466788999999999999999999
Q ss_pred HHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHH
Q 002199 779 IADCSLAMALDENY-TKAVSRRAALHEMIRDY-------TQAASDLQRLVSI 822 (954)
Q Consensus 779 i~~~ekAL~ldP~~-~~al~~lA~ly~~lg~~-------eeAi~~~ekAL~l 822 (954)
..++.+.++.+... .-..|..|.++..+++. ++|...|.++-.+
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999876653 33456668999999999 5555555555544
No 268
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.95 E-value=0.00064 Score=67.98 Aligned_cols=152 Identities=15% Similarity=0.070 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 002199 631 KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILES 710 (954)
Q Consensus 631 ~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~ 710 (954)
+.+.+..-..+.+.+.|... ..+.||..+..+|++.+|..+|++++.---.++
T Consensus 71 dP~R~~Rea~~~~~~ApTvq------------------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------- 123 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ------------------NRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------- 123 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH------------------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---------
Confidence 44444455555555666442 356789999999999999999999986321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002199 711 SMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790 (954)
Q Consensus 711 ~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP 790 (954)
...+..+++..+..+++..|...+++..+.+|... .+.....+|.+|..+|++.+|...|+.++...|
T Consensus 124 ----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 124 ----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred ----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 22455688999999999999999999999886533 445556678899999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 791 NYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 791 ~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
. +.+....+..+..+|+..+|...|..+.+-
T Consensus 192 g-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 192 G-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred C-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5 778888999999999999999887766654
No 269
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=97.95 E-value=2.7e-05 Score=84.63 Aligned_cols=39 Identities=46% Similarity=0.655 Sum_probs=35.4
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY 902 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~ 902 (954)
...++|++|||.++++..+||++||+++++||||+....
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~ 236 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAK 236 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC
Confidence 356899999999999999999999999999999997543
No 270
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.94 E-value=7.3e-05 Score=74.76 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002199 464 LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR----------MREALEDCMMAATVDPNFLKVYMRAA 533 (954)
Q Consensus 464 y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~----------~eeAl~~~~kALel~P~~~~a~~~LA 533 (954)
|+.|.+.++.....+|.+. ..+++.|.+++.+.+ +++|+.-|+.||.++|+...+++.+|
T Consensus 7 FE~ark~aea~y~~nP~Da----------dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lG 76 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA----------DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H----------HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhH----------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 6789999999999999997 889999988887744 57889999999999999999999999
Q ss_pred HHHHHcCC-----------HHHHHHHHHHHHhhchhhhh
Q 002199 534 KCHLVLGE-----------IENAQHYYHKLLNSAAAVCL 561 (954)
Q Consensus 534 ~iy~~lG~-----------~eeAl~~yekaL~l~P~~~~ 561 (954)
.+|..++. |++|..+|++|...+|.+..
T Consensus 77 nA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 77 NAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99998764 78899999999999998743
No 271
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=97.93 E-value=8.7e-06 Score=81.96 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=51.3
Q ss_pred cchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChhH-------HHHHHHHHHHCCCCCcccccccc
Q 002199 866 LDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYDQ-------EQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 866 ~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~~-------~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
.+||++||+++. ++..+|+++||+++++||||+...... ...++++|++|++ |..|+.|+-
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~d-p~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD-ALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 479999999987 678999999999999999999864322 2478899999986 889999963
No 272
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.1e-06 Score=84.41 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=53.5
Q ss_pred CCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHH---HHHHHHCCCCCcccccccccC
Q 002199 863 GEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEI---RKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 863 ~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~---~~~~~~l~~~~~~r~~yD~~g 929 (954)
....|.|.+|||.++++..+|+||||+||++||||+++.+...+.+ +.+++.+-+ .+.|..||-+-
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd-~e~rt~ydyal 98 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKD-NETRTQYDYAL 98 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccc-hhhHHhHHHHh
Confidence 4467899999999999999999999999999999999887655544 455666654 67788888543
No 273
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.91 E-value=8.1e-05 Score=74.46 Aligned_cols=89 Identities=22% Similarity=0.213 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG----------QIADAIADCSLAMALDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg----------~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l 806 (954)
|+.|.+.++.....+ |.++..+++-|.+++.+. .+++|+.-|++||.++|+...+++.+|.+|..+
T Consensus 7 FE~ark~aea~y~~n----P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 678999999999999 888899999998888763 467889999999999999999999999999877
Q ss_pred cC-----------HHHHHHHHHHHHHHhhhhHHH
Q 002199 807 RD-----------YTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 807 g~-----------~eeAi~~~ekAL~l~p~~~~~ 829 (954)
+. |++|..+|++|+.+.|++..+
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 53 677777777777776665544
No 274
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.91 E-value=0.0008 Score=67.29 Aligned_cols=129 Identities=18% Similarity=0.095 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 494 CYSNRAATRISLGRMREALEDCMMAAT-VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 494 ~~~~lA~~y~~lg~~eeAl~~~~kALe-l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
-.+.+|..+..+|++.+|...|++++. +.-+++..++.++++.+..+++..|...+++..+.+|.-
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------------- 157 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------------- 157 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-------------
Confidence 444555555555555555555555543 334444555555555555555555555555554444321
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
..+.-...+|.+|..+|++.+|...|+.++...|.-.
T Consensus 158 -----------------------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-- 194 (251)
T COG4700 158 -----------------------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-- 194 (251)
T ss_pred -----------------------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH--
Confidence 2345566678888888888888888888888777542
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
+....+..+..+|+..+|...+....
T Consensus 195 ----------------ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 195 ----------------ARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred ----------------HHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 22345667777887777776665543
No 275
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.88 E-value=1.4e-05 Score=86.63 Aligned_cols=95 Identities=27% Similarity=0.449 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
...+...+..|.++.||+.|..+|.++ |..+.+|..++.+++++++...||++|..|++++|+....|-.++.+..
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~ln----p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELN----PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccC----CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 345667788999999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHh
Q 002199 805 MIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 805 ~lg~~eeAi~~~ekAL~l~ 823 (954)
.+|+|++|..+|..+.+++
T Consensus 194 llg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLD 212 (377)
T ss_pred HhhchHHHHHHHHHHHhcc
Confidence 9999999999999999984
No 276
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=97.87 E-value=1.5e-05 Score=80.81 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=50.3
Q ss_pred chhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccccc
Q 002199 867 DFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 867 dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
+||.+|||++. ++..+|+++||+++++||||+..... ....++++|++|.+ |..|+.|+.
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~d-p~~Ra~Yll 72 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKH-PLKRAEYLL 72 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCC-hhHHHHHHH
Confidence 79999999986 67789999999999999999965432 22458899999986 889999974
No 277
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.093 Score=59.80 Aligned_cols=181 Identities=7% Similarity=-0.044 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG 697 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~ 697 (954)
.+..++.|-+-.|++.+|++....+.+......... +..... ...++.+|......+.++.|...|..|.++.
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~-----Llr~~~--~~ih~LlGlys~sv~~~enAe~hf~~a~k~t 397 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL-----LLRAHE--AQIHMLLGLYSHSVNCYENAEFHFIEATKLT 397 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH-----HHHHhH--HHHHHHHhhHhhhcchHHHHHHHHHHHHHhh
Confidence 455667788889999999998888776654332100 000111 1256778888888999999999999998753
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC------chhhHHHHHHHHHHHHH
Q 002199 698 SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES------RPFAAICFCNRAAALQA 771 (954)
Q Consensus 698 p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~------~p~~a~~~~~lA~~y~~ 771 (954)
... .-.+..-.++|..|++.++-+.-.+.++. +.|.+ ....+.+++..|...+.
T Consensus 398 ~~~-----------------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 398 ESI-----------------DLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hHH-----------------HHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 211 11233445789999998776654333333 33321 13456678888999999
Q ss_pred hcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 772 LGQIADAIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.+++.||...+.+.|++... ..-.+..++.+..-+|+..++.....-++.+..+
T Consensus 458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 99999999999999987511 1345666788899999999999999998888544
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0032 Score=65.63 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNF------LKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~------~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
+..|..-+.+|....+|++|..++.+|++-..++ ++++-..|.+...+..+.|+..+|+++..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566667778888889999998888888544333 33444445555555555566666555544
No 279
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.3e-05 Score=89.45 Aligned_cols=62 Identities=34% Similarity=0.394 Sum_probs=55.4
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHH---HHHHHHHCCCCCcccccccc
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQE---IRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~---~~~~~~~l~~~~~~r~~yD~ 927 (954)
..|.|.+|||..++++++|||.|||+|..-||||+..+.++|. +..|++++++ +++|..||.
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~-~~kR~eYd~ 298 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGD-SVKRKEYDL 298 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcc-hhhhhHHHH
Confidence 6889999999999999999999999999999999987766655 4567899986 999999995
No 280
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2e-05 Score=87.16 Aligned_cols=65 Identities=40% Similarity=0.560 Sum_probs=53.5
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh--hHHHHHH---HHHHHCCCCCcccccccccCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY--DQEQEIR---KATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~--~~~e~~~---~~~~~l~~~~~~r~~yD~~g~ 930 (954)
..|||++|+|.+.++..+|++||+++|++|||||+... .+..++. ++++++++ +.+|..||.||.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~-~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSD-PKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCC-HHHhhhccccCc
Confidence 46899999999999999999999999999999997766 2222233 45567775 899999999995
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.77 E-value=0.043 Score=62.07 Aligned_cols=140 Identities=21% Similarity=0.197 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.|..++.+....|.++.|...+.++....+...... .......+..+...|+..+|+..++..+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~----------------~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLL----------------PRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCC----------------cchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456667777777777777777777666442221100 1122334556666666666666666665
Q ss_pred hhc------------------------------cCCchhhHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCC
Q 002199 749 STN------------------------------IESRPFAAICFCNRAAALQAL------GQIADAIADCSLAMALDENY 792 (954)
Q Consensus 749 ~l~------------------------------~~~~p~~a~~~~~lA~~y~~l------g~~eeAi~~~ekAL~ldP~~ 792 (954)
... .......+.+++.+|.....+ +..++++..|..++.++|..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 510 011234566777788777777 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCH-----------------HHHHHHHHHHHHHhh
Q 002199 793 TKAVSRRAALHEMIRDY-----------------TQAASDLQRLVSILE 824 (954)
Q Consensus 793 ~~al~~lA~ly~~lg~~-----------------eeAi~~~ekAL~l~p 824 (954)
..+|+.+|..+..+=+. ..|+..|-+++.+-+
T Consensus 292 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~ 340 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGS 340 (352)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999877655222 346666777776643
No 282
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0023 Score=66.32 Aligned_cols=138 Identities=17% Similarity=0.089 Sum_probs=99.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcc
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-GRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-g~~eeAi~~y~kAL~l~~ 752 (954)
+.+| +..+.++|+.++++++++..+-. +....+..+..+|.+|-.. .++++||.+|++|-+...
T Consensus 81 ~~cy-kk~~~~eAv~cL~~aieIyt~~G--------------rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 81 ANCY-KKVDPEEAVNCLEKAIEIYTDMG--------------RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHh-hccChHHHHHHHHHHHHHHHhhh--------------HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 4444 45589999999999887643221 2223344566788888766 899999999999987643
Q ss_pred C--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 753 E--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT-------KAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 753 ~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~-------~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
. .......++...|..-..+++|.+||..|+++....-++. .-++.-|.|++-..+.-.|...+++..+++
T Consensus 146 ~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 146 GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 2 1234456777778888889999999999999887654442 233445777888799999999999999997
Q ss_pred hhh
Q 002199 824 ENQ 826 (954)
Q Consensus 824 p~~ 826 (954)
|.-
T Consensus 226 P~F 228 (288)
T KOG1586|consen 226 PAF 228 (288)
T ss_pred Ccc
Confidence 654
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.72 E-value=0.036 Score=68.10 Aligned_cols=327 Identities=11% Similarity=-0.027 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC--CCc----HHHHHHHHHHH
Q 002199 464 LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRI-SLGRMREALEDCMMAATVD--PNF----LKVYMRAAKCH 536 (954)
Q Consensus 464 y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~-~lg~~eeAl~~~~kALel~--P~~----~~a~~~LA~iy 536 (954)
...||.+++.+++ .+.-+ ....+.+++.+|.+++ ...++++|..++++++.+. ++. ..+.+.++.+|
T Consensus 37 I~~ai~CL~~~~~-~~~l~-----p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 37 IATAIKCLEAVLK-QFKLS-----PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIY 110 (608)
T ss_pred HHHHHHHHHHHhc-cCCCC-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 4567888888885 22211 2345789999999988 7899999999999998876 333 34566779999
Q ss_pred HHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHhcChHHHHHHHHHHHHHHhcC--
Q 002199 537 LVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINC--SGKLLEQKTSEAASSALERINEALSIS-- 612 (954)
Q Consensus 537 ~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~--a~~ll~~g~~~~a~eAL~~l~kaL~~~-- 612 (954)
.+.+... |+..++++++........ .+...+.. +...+..+++. .|++.++......
T Consensus 111 ~~~~~~~-a~~~l~~~I~~~~~~~~~---------------~w~~~frll~~~l~~~~~d~~---~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIEDSETYGHS---------------AWYYAFRLLKIQLALQHKDYN---AALENLQSIAQLANQ 171 (608)
T ss_pred HhcCHHH-HHHHHHHHHHHHhccCch---------------hHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHhhh
Confidence 9998888 999999988854321000 01111111 11222225666 5666665555543
Q ss_pred CCCHH----HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 613 SCSEK----LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALD 688 (954)
Q Consensus 613 P~~~~----~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~ 688 (954)
..++. +....+.++...+..+++++.+++++...... . .+... ..+...+|....--.+++..|++..+..
T Consensus 172 ~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~-q---~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~ 246 (608)
T PF10345_consen 172 RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL-Q---LDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQ 246 (608)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc-c---cCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 23333 33344667777788888999888886544321 0 00000 1222233333333446678888777766
Q ss_pred HHHHHHh---hCCCCc-------chhhHH-H----------HHHHHHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 689 LLQKLEQ---VGSISD-------RYGSEI-L----------ESSMSLA-GTVRALLHHKSAGNEAFKSGRYTEAVEHYTV 746 (954)
Q Consensus 689 ~l~kal~---l~p~~~-------~~~~~~-l----------~~~~~l~-~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~k 746 (954)
.+++.-. ...... .....+ + .....+. ...-.+..+.--|......+..+.|.+++.+
T Consensus 247 ~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k 326 (608)
T PF10345_consen 247 KLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEK 326 (608)
T ss_pred HHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHH
Confidence 6655432 221111 000000 0 0001111 1112234445557777788888888888888
Q ss_pred HHhhccC-------Cc---------------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---C------CCHHH
Q 002199 747 ALSTNIE-------SR---------------PFAAICFCNRAAALQALGQIADAIADCSLAMALD---E------NYTKA 795 (954)
Q Consensus 747 AL~l~~~-------~~---------------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld---P------~~~~a 795 (954)
+++.-.. .. .....+++.++.+..-++++..|....+.+.... | -.+..
T Consensus 327 ~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 406 (608)
T PF10345_consen 327 ALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLL 406 (608)
T ss_pred HHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHH
Confidence 8765211 00 1123455667778888999999999998877553 2 24778
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 796 VSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 796 l~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
++..|..+...|+.+.|..+|.+.+
T Consensus 407 ~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 407 HYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 8999999999999999999998544
No 284
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.71 E-value=0.023 Score=66.78 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=47.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------Hh-----
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA------------AT----- 520 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA------------Le----- 520 (954)
....|+|+.|...++ .+...|+.. ..|..++...+..|+.--|..+|... ++
T Consensus 454 aid~~df~ra~afle-s~~~~~da~----------amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadea 522 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLE-SLEMGPDAE----------AMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEA 522 (1636)
T ss_pred ccccCchHHHHHHHH-hhccCccHH----------HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999987654 567777765 67777777666666655444444211 22
Q ss_pred ---cCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 521 ---VDPNFLKVYMRAAKCHLVLGEIENAQHYY 549 (954)
Q Consensus 521 ---l~P~~~~a~~~LA~iy~~lG~~eeAl~~y 549 (954)
+.-+-...|.-+|.+.+.-.+|.+|...|
T Consensus 523 s~~~ggdgt~fykvra~lail~kkfk~ae~if 554 (1636)
T KOG3616|consen 523 SIEIGGDGTDFYKVRAMLAILEKKFKEAEMIF 554 (1636)
T ss_pred hHhhCCCCchHHHHHHHHHHHHhhhhHHHHHH
Confidence 22222344555555555556666666555
No 285
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.71 E-value=4.3e-05 Score=77.65 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=53.0
Q ss_pred CcchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh-H--------HHHHHHHHHHCCCCCcccccccc--cCC
Q 002199 865 PLDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD-Q--------EQEIRKATKESPQNSHYGRSSDA--YGY 930 (954)
Q Consensus 865 ~~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~-~--------~e~~~~~~~~l~~~~~~r~~yD~--~g~ 930 (954)
..+||.+|||++. .+..+|+++||+++.+||||+..... . ...++++|.+|.+ |..|+.|+. .|.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~-p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRD-PLKRARYLLHLRGV 82 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-hhhHHHHHHHhcCC
Confidence 4789999999985 57889999999999999999975321 1 2578899999986 889999983 453
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.67 E-value=0.0038 Score=71.42 Aligned_cols=202 Identities=13% Similarity=0.062 Sum_probs=134.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC------cc--hhhHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG------SV--TYSLARLWRWR 671 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~------~~--~~~~~~l~a~~ 671 (954)
.-++...+||+++|+.+.+|..||+-. ..-..+|..+|+++++.............. .. ...-..+++..
T Consensus 186 aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~Kr 263 (539)
T PF04184_consen 186 ARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKR 263 (539)
T ss_pred HHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHH
Confidence 567778899999999999998887632 234578888888888776654332110000 00 01111234567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
.+|.+..++|+.++|++.++..++..|.... +..+.++-..++..+.|.++...+.+-=.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~------------------l~IrenLie~LLelq~Yad~q~lL~kYdDi- 324 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDN------------------LNIRENLIEALLELQAYADVQALLAKYDDI- 324 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccch------------------hhHHHHHHHHHHhcCCHHHHHHHHHHhccc-
Confidence 7899999999999999999999988774332 234556788889999999998888775322
Q ss_pred cCCchhhHHHHHHHHHHHHH-hcC---------------HHHHHHHHHHHHHhCCCCHHHHHHHH------HHHHHhcCH
Q 002199 752 IESRPFAAICFCNRAAALQA-LGQ---------------IADAIADCSLAMALDENYTKAVSRRA------ALHEMIRDY 809 (954)
Q Consensus 752 ~~~~p~~a~~~~~lA~~y~~-lg~---------------~eeAi~~~ekAL~ldP~~~~al~~lA------~ly~~lg~~ 809 (954)
.-|..+.+.+..|.+..+ .++ -..|++.+.+|++.+|..++.++.+= .-+.+.|+
T Consensus 325 --~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD- 401 (539)
T PF04184_consen 325 --SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD- 401 (539)
T ss_pred --cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-
Confidence 125566666666654433 222 23467889999999998887555432 23455565
Q ss_pred HHHHHHHHHHHHHhhh
Q 002199 810 TQAASDLQRLVSILEN 825 (954)
Q Consensus 810 eeAi~~~ekAL~l~p~ 825 (954)
.||+.+---.+..+.+
T Consensus 402 SEAiaYAf~hL~hWk~ 417 (539)
T PF04184_consen 402 SEAIAYAFFHLQHWKR 417 (539)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888887766666543
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.67 E-value=0.058 Score=61.05 Aligned_cols=163 Identities=12% Similarity=0.032 Sum_probs=110.8
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 612 SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQ 691 (954)
Q Consensus 612 ~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ 691 (954)
.......+...+.+....|.++.|...+.++....+...... ....+..+.+++..|+..+|+..++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~-------------~~v~~e~akllw~~g~~~~Ai~~L~ 208 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLL-------------PRVFLEYAKLLWAQGEQEEAIQKLR 208 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCC-------------cchHHHHHHHHHHcCCHHHHHHHHH
Confidence 345567889999999999999999999999888663221100 0034556889999999999999999
Q ss_pred HHHhhCCCCc-c-hhhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhc
Q 002199 692 KLEQVGSISD-R-YGSEILES------------SMSLAGTVRALLHHKSAGNEAFKS------GRYTEAVEHYTVALSTN 751 (954)
Q Consensus 692 kal~l~p~~~-~-~~~~~l~~------------~~~l~~~~~~~~~~~~lG~~~~~~------g~~eeAi~~y~kAL~l~ 751 (954)
..+....... . .....+.. ..........+..+..+|...... +.+++++..|.+++.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~ 288 (352)
T PF02259_consen 209 ELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD 288 (352)
T ss_pred HHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC
Confidence 8887221111 0 00000100 001222233445666778777777 99999999999999998
Q ss_pred cCCchhhHHHHHHHHHHHHHhcC-----------------HHHHHHHHHHHHHhCCC
Q 002199 752 IESRPFAAICFCNRAAALQALGQ-----------------IADAIADCSLAMALDEN 791 (954)
Q Consensus 752 ~~~~p~~a~~~~~lA~~y~~lg~-----------------~eeAi~~~ekAL~ldP~ 791 (954)
|....+|+.+|..+..+=. ...|+..|-+++.+.+.
T Consensus 289 ----~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 289 ----PSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ----hhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7777888888877765422 23477777888887776
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.63 E-value=0.049 Score=66.42 Aligned_cols=218 Identities=20% Similarity=0.185 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISS------CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P------~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
-.+..+.......++.++...|..+...+.... ......-..|.+....|++++|+.+.+.++..-|.+..
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~--- 493 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY--- 493 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc---
Confidence 345567777778899988888888877766421 12456667789999999999999999999998876632
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
..++..+..+|.+..-.|++++|+.+.+.+.++....... .-.+......+.++..+
T Consensus 494 ---------~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~--------------~l~~~~~~~~s~il~~q 550 (894)
T COG2909 494 ---------RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY--------------HLALWSLLQQSEILEAQ 550 (894)
T ss_pred ---------hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH--------------HHHHHHHHHHHHHHHHh
Confidence 2333466778999999999999999999998764433332 22234445567777777
Q ss_pred CC--HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCC--HH-HHHHHHHHHHH
Q 002199 735 GR--YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD----ENY--TK-AVSRRAALHEM 805 (954)
Q Consensus 735 g~--~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld----P~~--~~-al~~lA~ly~~ 805 (954)
|+ +.+....|...-.......+........++.++...-+++.+.......+++- |.. .. +++.++.+++.
T Consensus 551 Gq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 551 GQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 73 33333444433322222224555556666666666656888887777777653 222 22 33578999999
Q ss_pred hcCHHHHHHHHHHHHHHhh
Q 002199 806 IRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 806 lg~~eeAi~~~ekAL~l~p 824 (954)
.|++++|...+.....+.-
T Consensus 631 ~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 631 RGDLDKALAQLDELERLLL 649 (894)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 9999999999988887743
No 289
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.62 E-value=0.13 Score=62.97 Aligned_cols=266 Identities=17% Similarity=0.067 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
...+......+.....+.+|.+|..+..++...-+.-. .......++...-.+|.+....|+.+.|+...+.++..-|.
T Consensus 412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~-~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPM-HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCc-ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 34455667788888999999999999999887665521 11223446777888899999999999999999999998775
Q ss_pred c-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC--hHH
Q 002199 525 F-----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT--SEA 597 (954)
Q Consensus 525 ~-----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~--~~~ 597 (954)
. ..++..+|.+..-.|++.+|+.+...+.++..... .. ...+...+..+..+..+|+ +.+
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~------~~-------~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD------VY-------HLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc------cH-------HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4 45777889999999999999999999877532210 01 1113334444555555662 222
Q ss_pred HHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 598 ASSALERI-NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 598 a~eAL~~l-~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
.+.+.... .+-+...|-.......++.++..--+++.+.......+........ .+...-..++.++.+
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~----------~~~~~~~~~~~LA~l 627 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTP----------QPLLSRLALSMLAEL 627 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhccc----------chhHHHHHHHHHHHH
Confidence 22222222 2223334544444455555555444477777666666655432211 111111234689999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
++..|++++|...+.....+...... ..... +.++.-.......+|++..|.....+.
T Consensus 628 ~~~~Gdl~~A~~~l~~~~~l~~~~~~-~~~~~------------a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 628 EFLRGDLDKALAQLDELERLLLNGQY-HVDYL------------AAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCC-CchHH------------HHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999999999999998776544421 11100 111122233445678888888887774
No 290
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.55 E-value=0.0031 Score=62.19 Aligned_cols=101 Identities=20% Similarity=0.075 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc------------------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESR------------------PFAAICFCNRAAALQALGQIADAIADCSLA 785 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~------------------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekA 785 (954)
+...|......++...++..+.+++.+....- .....++..++.++...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 33456667788899999999999998742110 223445667788888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 786 MALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 786 L~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+.++|-+..++..+-.+|..+|++.+|+..|+++...+.
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.54 E-value=0.019 Score=69.52 Aligned_cols=282 Identities=14% Similarity=0.013 Sum_probs=188.4
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHH
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL-----GRMREALEDCMMAATV-----DPNFLKVYMRA 532 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l-----g~~eeAl~~~~kALel-----~P~~~~a~~~L 532 (954)
....|..+|+.+-...- +.+...+|.||+.- .+.+.|+.+|+.+.+- .-.++.+.+.+
T Consensus 227 ~~~~a~~~~~~~a~~g~------------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~l 294 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH------------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGL 294 (552)
T ss_pred hhhHHHHHHHHHHhhcc------------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHH
Confidence 45678888887776533 26788888888865 6899999999999771 11255688999
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 533 AKCHLVLG-----EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 533 A~iy~~lG-----~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
|.+|.... ++..|+.+|.++-.+... ...+.++..+.......+...|..+|..
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~---------------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAELGNP---------------------DAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhcCCc---------------------hHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 99999854 678899999999887543 2344445444433312333489999988
Q ss_pred HHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc-CC
Q 002199 608 ALSISSCSEKLLEMKADALYML----RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI-GK 682 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~l----g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-G~ 682 (954)
|... .+..+.+.+|.||..- .+...|..++.++.+..+-. +.+.++..+... +.
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~-------------------A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPS-------------------AAYLLGAFYEYGVGR 412 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChh-------------------hHHHHHHHHHHcccc
Confidence 8764 4677888888888763 58899999999998887322 234444444322 77
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---cCCHHHHHHHHHHHHhhccCCchhh
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF-K---SGRYTEAVEHYTVALSTNIESRPFA 758 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~-~---~g~~eeAi~~y~kAL~l~~~~~p~~ 758 (954)
+..+...+.....+.-...... +..+........ . ..+...+...|.++... .+
T Consensus 413 ~~~~~~~~~~~a~~g~~~~q~~----------------a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------g~ 470 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYEVAQSN----------------AAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ------GN 470 (552)
T ss_pred ccHHHHHHHHHHHhhhhHHhhH----------------HHHHHHhccccccccccccchhHHHHHHHHHHhc------cC
Confidence 7777666665544321111100 000000110111 1 23566777777777553 46
Q ss_pred HHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHh
Q 002199 759 AICFCNRAAALQAL----GQIADAIADCSLAMALDENYTKAVSRRAALHEMI---RDYTQAASDLQRLVSIL 823 (954)
Q Consensus 759 a~~~~~lA~~y~~l----g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l---g~~eeAi~~~ekAL~l~ 823 (954)
..+...+|.+|..- .+++.|...|.+|.... ..+.+++|.++..- ..+..|..+|.++.+..
T Consensus 471 ~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 471 ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 77888888888765 36999999999998776 99999999999743 22788999998887764
No 292
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=97.51 E-value=0.0001 Score=74.53 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=51.9
Q ss_pred CcchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccccc
Q 002199 865 PLDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 865 ~~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
..+||.+||+++. .+..+|+++||+++.++|||+..... ....++++|.+|.+ |..|+.|+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~-p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKS-PPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCC-hhhhHHHHH
Confidence 4689999999988 55799999999999999999975432 23578899999986 888999984
No 293
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.51 E-value=0.041 Score=64.79 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQ------GINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA----- 518 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~k------AL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA----- 518 (954)
.|-..|..|-+..++++|+++|.+ ||++..-. .....+.+--..|.-+...|+++.|+..|-.|
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 344455666677788888888764 45442111 01122344455677778888888888776443
Q ss_pred -HhcC-------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 519 -ATVD-------------------PNFLKVYMRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 519 -Lel~-------------------P~~~~a~~~LA~iy~~lG~~eeAl~~yeka 552 (954)
++.. ..-...|-.+|.-|...|+|+-|.+.|.++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 2110 011223344566666677777777666554
No 294
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0054 Score=64.01 Aligned_cols=181 Identities=18% Similarity=0.088 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
...|..-+.+|....+|++|...+.++++-..++...... .-++-..+.+...+..+.++..+|+++..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-----------AKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-----------AKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455566778888889999998888888766555321111 11455566677778888888888888876
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc--hhhHHHHHHHHHHHHHhc
Q 002199 696 VGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR--PFAAICFCNRAAALQALG 773 (954)
Q Consensus 696 l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~--p~~a~~~~~lA~~y~~lg 773 (954)
+.-.+.. ...+......+--.....+.++|+++|++++.+-.... ......+...+.++.++.
T Consensus 100 lY~E~Gs---------------pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGS---------------PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCC---------------cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 5322221 11112222344455677899999999999998743222 334556777888999999
Q ss_pred CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 774 QIADAIADCSLAMAL------DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 774 ~~eeAi~~~ekAL~l------dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+|.+|-..+.+-..+ .|+...++.....+|+...+|.+|..+|+..-++
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 999998887764322 3555666777777888888999999999887666
No 295
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.39 E-value=0.00031 Score=54.29 Aligned_cols=43 Identities=30% Similarity=0.220 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
.++..+|.+|..+|++++|++.|+++++.+|+++.++..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 5678899999999999999999999999999999999888753
No 296
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.38 E-value=0.47 Score=55.09 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
+.|-+.++|..+-..+-.+ -+++..+.|++.+..-|..+ .+|.......+...+|+.-...|.++|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~----------r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSP----------RAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCc----------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4567788898887765555 99999999999999999998 8888888889999999999999988875
No 297
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.38 E-value=0.00055 Score=77.69 Aligned_cols=108 Identities=25% Similarity=0.276 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL---GRMREALEDCMMA 518 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l---g~~eeAl~~~~kA 518 (954)
.+.|+.++.++..|+-.+..+....||..|.++++..|... .+|.++|.++++. |+.-.|+.++..|
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~----------~~l~nraa~lmkRkW~~d~~~AlrDch~A 437 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI----------YLLENRAAALMKRKWRGDSYLALRDCHVA 437 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh----------HHHHhHHHHHHhhhccccHHHHHHhHHhh
Confidence 35578888999999999999999999999999999999986 8999999999986 4667899999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 519 ATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 519 Lel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++++|...++|++|+.++..++++.+|+.+...+....|.+
T Consensus 438 lrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 438 LRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999999999999999999998888888844
No 298
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.38 E-value=0.0055 Score=60.35 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc----cCCch--------HHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAG----CCIKP--------LVLCYSNRAATRISLGRMREALED 514 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~----~~~~~--------la~~~~~lA~~y~~lg~~eeAl~~ 514 (954)
.-+.+...|......++...++..+.+++.+.....-.+ .|... ...++..++..+...|++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 344556667888889999999999999999876543222 12211 366777888889999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 515 ~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
+++++.++|.+-.+|..+-.+|..+|++.+|+..|+++...
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988653
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.0068 Score=61.57 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=106.2
Q ss_pred HHHHHHHcCCH---HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 673 ISKSYFCIGKL---EVALDLLQKLEQVGSISDRYGSEILESSMSLA-GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 673 Lg~~y~~lG~~---eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~-~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.|.-|+...+. .+|-..|++++.............++....-. ...-.......++..+...+++++|+..++.++
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45556655444 47888888877654322222233333333333 333445566778999999999999999999998
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-TKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
... .+......+-.+||.+...+|.+++|+..+..... +.. ...-..+|.++...|+.++|+..|+++++.++.
T Consensus 117 ~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 117 AQT-KDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred ccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 663 22345677888999999999999999998876432 222 333466799999999999999999999998643
No 300
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.31 E-value=0.0004 Score=53.67 Aligned_cols=43 Identities=21% Similarity=0.130 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
.++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 5789999999999999999999999999999999999998863
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.30 E-value=0.00023 Score=51.85 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 781 DCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 781 ~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788899999999999999999999999988863
No 302
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.30 E-value=0.0075 Score=69.50 Aligned_cols=98 Identities=15% Similarity=0.048 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg 807 (954)
|..+...|+...|+.++..|+...| ......+.+||.++++-+..-+|-..+.++|.+.-..+-.++.+|.+|+.+.
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p---~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAP---LQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccCh---hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 4445667999999999999998874 2344567899999999999999999999999999888999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhHH
Q 002199 808 DYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 808 ~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+.+.|++.|++|+++.|+..+
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChh
Confidence 999999999999999776654
No 303
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.26 E-value=0.39 Score=55.75 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=65.8
Q ss_pred HHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 472 TQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHK 551 (954)
Q Consensus 472 ~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yek 551 (954)
++-|+.+|.+- ..|+.+-.-+..+ -++++.+.|++.+...|..+.+|.......+...+|+.-...|.+
T Consensus 10 ~~rie~nP~di----------~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~R 78 (656)
T KOG1914|consen 10 RERIEENPYDI----------DSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSR 78 (656)
T ss_pred HHHHhcCCccH----------HHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67788899986 8888887777666 999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 002199 552 LLNS 555 (954)
Q Consensus 552 aL~l 555 (954)
+|..
T Consensus 79 CLvk 82 (656)
T KOG1914|consen 79 CLVK 82 (656)
T ss_pred HHHH
Confidence 9873
No 304
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.24 E-value=0.089 Score=63.76 Aligned_cols=268 Identities=12% Similarity=-0.037 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHH-------hCCCCcccccCCchHHHHHHHHHHHHHHcC-----C
Q 002199 445 QETCEMWRLRGNQAYKN-----NNLTEAEDFYTQGIN-------SVPLSETAGCCIKPLVLCYSNRAATRISLG-----R 507 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~-----g~y~eAi~~y~kAL~-------~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-----~ 507 (954)
.....+...+|.+++.- .+.+.|+.+|..+.. .. .+ .+.+.+|.+|+.-. +
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~----------~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LP----------PAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CC----------ccccHHHHHHhcCCCCcccc
Confidence 34455666777776644 699999999999987 22 22 57888999999853 7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002199 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLG---EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYIN 584 (954)
Q Consensus 508 ~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG---~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~ 584 (954)
+..|+..|.++..+. ++.+.+.+|.+|..-. ++..|.++|..|....- +...+.
T Consensus 309 ~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---------------------~~A~~~ 365 (552)
T KOG1550|consen 309 YEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---------------------ILAIYR 365 (552)
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---------------------hHHHHH
Confidence 888999999998875 5578999999998876 57899999999876532 344555
Q ss_pred HHHHHHH-hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHhchhhhhhhhhhhhccCcchh
Q 002199 585 CSGKLLE-QKTSEAASSALERINEALSISSCSEKLLEMKADALYML-RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662 (954)
Q Consensus 585 ~a~~ll~-~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l-g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~ 662 (954)
++..+.. .+-......|+.++.++.... .+.+...++.++... +++..+...+.....+.-......
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~--------- 434 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSN--------- 434 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhH---------
Confidence 5555543 233334458999999998877 344444455444433 778777776666555543322100
Q ss_pred hHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Q 002199 663 SLARLWRWRLISKSYFC----IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS---- 734 (954)
Q Consensus 663 ~~~~l~a~~~Lg~~y~~----lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~---- 734 (954)
.+.+......+.. ..+.+.+...+.++... ....+...+|..|+.-
T Consensus 435 ----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------------------g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 435 ----AAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------------------GNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred ----HHHHHHhccccccccccccchhHHHHHHHHHHhc----------------------cCHHHHhhhcceeeecCCCC
Confidence 0000000001111 11344444444444322 1223445577777543
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCC
Q 002199 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA---LGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~---lg~~eeAi~~~ekAL~ldP~ 791 (954)
.+++.|...|..|... . +...+++|.++.. ...+..|.+++.++.+.+..
T Consensus 489 ~d~~~a~~~y~~a~~~-----~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQ-----G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred CChHHHHHHHHHHHHh-----h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 5699999999999764 2 7888999988864 12389999999999887654
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.23 E-value=0.00048 Score=49.80 Aligned_cols=32 Identities=34% Similarity=0.427 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+|+++|.+|+.+|++++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56677777777777777777777777777765
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.21 E-value=0.00029 Score=51.29 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002199 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQH 547 (954)
Q Consensus 514 ~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~ 547 (954)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 307
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.11 Score=63.75 Aligned_cols=254 Identities=14% Similarity=0.129 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.+|..+|.+.++.|...+|++.|-+| +++..|...-.+..+.|.|++-+.++..+-+.-...-.+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id---------- 1169 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID---------- 1169 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch----------
Confidence 45556666666666666666655544 444555555555555666666555555554422111000
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
-.+...|...++..+ ++. +-..|+.+.+ ...|.-++..+.|+.|.-+|..+-
T Consensus 1170 ----------~eLi~AyAkt~rl~e-------lE~-fi~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~vS--------- 1221 (1666)
T KOG0985|consen 1170 ----------SELIFAYAKTNRLTE-------LEE-FIAGPNVANI-QQVGDRCFEEKMYEAAKLLYSNVS--------- 1221 (1666)
T ss_pred ----------HHHHHHHHHhchHHH-------HHH-HhcCCCchhH-HHHhHHHhhhhhhHHHHHHHHHhh---------
Confidence 001111112222221 111 1124555443 456788888888888877765431
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHH-----HHHHHH-----HHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESS-----MSLAGT-----VRALL 722 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~-----~~l~~~-----~~~~~ 722 (954)
-|..|+..+..+|+|+.|+..-++|-... .+...--.+ ..+... +-.+.
T Consensus 1222 ----------------N~a~La~TLV~LgeyQ~AVD~aRKAns~k-----tWK~VcfaCvd~~EFrlAQiCGL~iivhad 1280 (1666)
T KOG0985|consen 1222 ----------------NFAKLASTLVYLGEYQGAVDAARKANSTK-----TWKEVCFACVDKEEFRLAQICGLNIIVHAD 1280 (1666)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHhhhccchh-----HHHHHHHHHhchhhhhHHHhcCceEEEehH
Confidence 34567888888888888888888774321 111100000 011000 01123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-C------CCHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL-D-E------NYTK 794 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l-d-P------~~~~ 794 (954)
.+-.+-..|...|-|++-|..++.+|.+. ......+..||.+|.+- ++++-.++++.-... + | +...
T Consensus 1281 eLeeli~~Yq~rGyFeElIsl~Ea~LGLE----RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqah 1355 (1666)
T KOG0985|consen 1281 ELEELIEYYQDRGYFEELISLLEAGLGLE----RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAH 1355 (1666)
T ss_pred hHHHHHHHHHhcCcHHHHHHHHHhhhchh----HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34456677889999999999999999887 66677778888777653 344444444432211 0 1 2344
Q ss_pred HHHHHHHHHHHhcCHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~ 815 (954)
.|..+-.+|.+-..|+.|.-.
T Consensus 1356 lW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1356 LWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHHHHHHHHHhhhhhhHHHHH
Confidence 566666777777777766543
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.21 E-value=0.13 Score=56.72 Aligned_cols=148 Identities=17% Similarity=0.093 Sum_probs=96.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVP-LSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P-~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
..++|+++.|..+|.++-...+ -++ .....++..+++.|...+..+ +++.|+..+++++++-..... .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~---~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-------~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDP---DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-------M 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCc---HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-------c
Confidence 4678999999999999877652 221 123457788888888888888 888888888887765211000 0
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
.....+..+ .+...+..++..++..+.++...+|+..+..+-...|+.
T Consensus 73 ---~~~~~~~~e-----------------------------lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~ 120 (278)
T PF08631_consen 73 ---DKLSPDGSE-----------------------------LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK 120 (278)
T ss_pred ---cccCCcHHH-----------------------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC
Confidence 000000000 012334445566666666666667777777776677887
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhh
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAE 647 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p 647 (954)
+.++...-.++...++.+++.+.+.+++...+
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 88877777777778888888888888877643
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.19 E-value=0.00063 Score=49.21 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
.+|+++|.+|..+|++++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35555666666666666666666666666554
No 310
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.021 Score=61.71 Aligned_cols=134 Identities=18% Similarity=0.109 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..-+..+.-.+..|++.+|...|..++...|++..+...++.||...|+.+.|...+...-..... .
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~----~--------- 201 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD----K--------- 201 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh----h---------
Confidence 445566777889999999999999999999999999999999999999999998887653221111 0
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
....+...+.+....-...+. ..+.+.+..+|++..+.+.+|..|...|++++|.+.+-..+..+..
T Consensus 202 --~~~~l~a~i~ll~qaa~~~~~-------~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 202 --AAHGLQAQIELLEQAAATPEI-------QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred --HHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 000111222222222222222 2355677789999999999999999999999999999888877643
No 311
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.026 Score=61.39 Aligned_cols=129 Identities=16% Similarity=0.026 Sum_probs=86.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
+.+++..|++-+|....++.++-.|.+- .++...-.+++..|+...-...+++++..-..
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------------------la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~ 169 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------------------LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA 169 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh--------------------hhhhhhhhHHHhccchhhhhhHHHHhccccCC
Confidence 4456667777777777777777666442 23333345566667777777777777765222
Q ss_pred CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 754 SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 754 ~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+.|....+.-.++.++...|-|++|.+...++++++|.+..+...++.++.+.+++.++.+.+++.-..
T Consensus 170 dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 170 DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 335556666667777777777777777777777777777777777777777777777777776554333
No 312
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.0023 Score=72.79 Aligned_cols=106 Identities=28% Similarity=0.312 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCCHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL---GQIADAIADCSLAMALDENYTKAVS 797 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l---g~~eeAi~~~ekAL~ldP~~~~al~ 797 (954)
+..++..|+-.+....+..||..|.+++... |....+|.++|.++++. |+.-.|+.+|..|++++|....+++
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~----~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYV----PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhc----cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 4445556777777888999999999999998 88999999999999876 5888999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 798 RRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 798 ~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
.|++++..++++.+|+.+...+...+|.+...+
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 999999999999999999998888888655443
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.01 E-value=0.0014 Score=47.07 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~ 481 (954)
++.|+.+|..++..|+|++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999975
No 314
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.00 E-value=0.026 Score=64.79 Aligned_cols=185 Identities=16% Similarity=0.048 Sum_probs=119.2
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
..-..+..+...-|+..++||+++|+... +|..|+. -...-..+|..+|+++++.......
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAd-----------------AYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg 235 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCAD-----------------AYILLAE--EEASTIVEAEELLRQAVKAGEASLG 235 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhH-----------------HHhhccc--ccccCHHHHHHHHHHHHHHHHHhhc
Confidence 34455678889999999999999997744 3444432 1223367888888888775332221
Q ss_pred hhhHHHHHHHH----HHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHH
Q 002199 703 YGSEILESSMS----LAGTV--RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIA 776 (954)
Q Consensus 703 ~~~~~l~~~~~----l~~~~--~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~e 776 (954)
.... ...... +.... ..+.+...+|.++.+.|+.++||+.|+..++..|. .....++.+|..+++.++.|.
T Consensus 236 ~s~~-~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~--~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 236 KSQF-LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN--LDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhh-hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc--cchhhHHHHHHHHHHhcCCHH
Confidence 1000 000000 00000 11233456899999999999999999999988742 246679999999999999999
Q ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh-cC---------------HHHHHHHHHHHHHHhhhhHHH
Q 002199 777 DAIADCSLAMAL-DENYTKAVSRRAALHEMI-RD---------------YTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 777 eAi~~~ekAL~l-dP~~~~al~~lA~ly~~l-g~---------------~eeAi~~~ekAL~l~p~~~~~ 829 (954)
++...+.+-=++ -|..+...|..|.+..+. ++ -..|++.+.+|++.+|.-..+
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 999998885333 256666666666554331 22 234677888888887665443
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.98 E-value=0.4 Score=52.85 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=88.5
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC----CcccccCCchHHHHHHHHHHHHHHcCCHH---
Q 002199 438 VSPTAAFQETCEMWRLRGNQAYKNN-NLTEAEDFYTQGINSVPL----SETAGCCIKPLVLCYSNRAATRISLGRMR--- 509 (954)
Q Consensus 438 ~~~~~~~~~~ae~l~~~G~~~~~~g-~y~eAi~~y~kAL~~~P~----~~~~~~~~~~la~~~~~lA~~y~~lg~~e--- 509 (954)
...+......+..+++.|...+..+ +|+.|+..+++|+++... .............++..++.+|+..+.++
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 4455666778999999999999999 999999999999998422 22111222345889999999999988765
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 510 eAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
+|+..++.+-...|+.+..++..-.++...++.+++.+.+.+++..
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444444555556887777766666666689999999999988875
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.97 E-value=0.0017 Score=46.71 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
.+++.+|.+++.+|++++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
No 317
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.93 E-value=0.017 Score=63.66 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK-SGRYTEAVEHYTVA 747 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~-~g~~eeAi~~y~kA 747 (954)
+|..+.....+.+..+.|...|.+|++..+.... .|...|.+.+. .++.+.|...|+.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~--------------------vy~~~A~~E~~~~~d~~~A~~Ife~g 62 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH--------------------VYVAYALMEYYCNKDPKRARKIFERG 62 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH--------------------HHHHHHHHHHHTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH--------------------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5666677777888899999999999854332322 34456767566 56777799999999
Q ss_pred HhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT---KAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 748 L~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~---~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
++.. +.+..+|......+..+++.+.|...|++++..-|... ..|......-...|+.+.....++++.+++|
T Consensus 63 lk~f----~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 63 LKKF----PSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHC----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 9998 77788888888999999999999999999998876655 5777778888889999999999999999988
Q ss_pred hhHH
Q 002199 825 NQSA 828 (954)
Q Consensus 825 ~~~~ 828 (954)
.+..
T Consensus 139 ~~~~ 142 (280)
T PF05843_consen 139 EDNS 142 (280)
T ss_dssp TS-H
T ss_pred hhhH
Confidence 7543
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.93 E-value=1.1 Score=51.06 Aligned_cols=344 Identities=13% Similarity=0.024 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCc
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD----PNF 525 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~----P~~ 525 (954)
.+-.+-...|-..+.+.-..+....-+..|..+ .+..-.|...++.+.|.+|++.+..--+.- |-.
T Consensus 47 vl~grilnAffl~nld~Me~~l~~l~~~~~~s~----------~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~ 116 (549)
T PF07079_consen 47 VLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA----------YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPW 116 (549)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch----------HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccch
Confidence 333344444556666666666666666677665 677778889999999999999886554431 110
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-h-hhhhhHHHHHHHHHHHHHHH-----------hHHH
Q 002199 526 -----------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSA-A-AVCLDRRITIEAADGLQKAQ-----------KVTE 581 (954)
Q Consensus 526 -----------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~-P-~~~~~~~~~~ea~~~l~~~~-----------~~~~ 581 (954)
...-...|.++...|+|.+++..+++.+..- | ...-.......+...+.+.. -...
T Consensus 117 Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pd 196 (549)
T PF07079_consen 117 LDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPD 196 (549)
T ss_pred hhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChH
Confidence 1112346889999999999999998876531 1 00000000001111111100 0122
Q ss_pred HHHHHHHHHH------hcChHHH---HHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHccC
Q 002199 582 YINCSGKLLE------QKTSEAA---SSALERINEALSIS---------------------SCSEKLLEMKADALYMLRK 631 (954)
Q Consensus 582 ~l~~a~~ll~------~g~~~~a---~eAL~~l~kaL~~~---------------------P~~~~~~~~lA~~~~~lg~ 631 (954)
++..+.-|.. +.-|... .+-+..+.+.+-+- |+..-+...+-.-.+ .+
T Consensus 197 yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~--~~ 274 (549)
T PF07079_consen 197 YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFM--SD 274 (549)
T ss_pred HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHh--cC
Confidence 2222222221 1111111 01112222222222 222211111111111 13
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchh-----hH
Q 002199 632 YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYG-----SE 706 (954)
Q Consensus 632 ~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~-----~~ 706 (954)
.+++...++......-.. .....+...-.+-......++...|..++.-..-++|...-.. .+
T Consensus 275 ~e~~~~~ce~ia~~~i~~------------Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~ 342 (549)
T PF07079_consen 275 PEQVGHFCEAIASSKIEK------------LKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPK 342 (549)
T ss_pred hHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHH
Confidence 344444444332221000 0000011122222334577888888888887777777654211 00
Q ss_pred H--------------HHHHHHHHH--------HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhccCCc--------
Q 002199 707 I--------------LESSMSLAG--------TVRALLHHKSAGNEAFKSGR-YTEAVEHYTVALSTNIESR-------- 755 (954)
Q Consensus 707 ~--------------l~~~~~l~~--------~~~~~~~~~~lG~~~~~~g~-~eeAi~~y~kAL~l~~~~~-------- 755 (954)
. ++..+.+.. +.+.+..+...|.-+...|. -++|+..++.++...+.+.
T Consensus 343 ~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~ 422 (549)
T PF07079_consen 343 VLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL 422 (549)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 0 111111111 11222333445666777777 7778887777766532110
Q ss_pred ----------------------------------hhhHHHHHHH--HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 756 ----------------------------------PFAAICFCNR--AAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 756 ----------------------------------p~~a~~~~~l--A~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
..+..+-+.+ |.-++..|+|.+++-+..=..+++| .+.++..+
T Consensus 423 fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLl 501 (549)
T PF07079_consen 423 FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLL 501 (549)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 1122233333 3445678999999999999999999 89999999
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q 002199 800 AALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ek 818 (954)
|.+++...+|++|..++..
T Consensus 502 Gl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 502 GLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 9999999999999998764
No 319
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.93 E-value=0.24 Score=56.31 Aligned_cols=174 Identities=16% Similarity=0.015 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHhchhhhh-hhhhhhh
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSI-SSCSEKLLEMKADALYM---LRKYEEAIQLCEHTLPVAEK-NFASVLA 655 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~-~P~~~~~~~~lA~~~~~---lg~~eeAi~~~ekaL~l~p~-~~~~~~~ 655 (954)
..+++...|....+|+...+-++.+...-.. -+..+.+...+|.++.+ .|+.++|+..+..++..... +.+
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d---- 218 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD---- 218 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH----
Confidence 3445555566666777333322222222100 24567788899999999 99999999999996554432 222
Q ss_pred ccCcchhhHHHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 656 DNGSVTYSLARLWRWRLISKSYF---------CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~---------~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
.+.++|.+|- ....+++|+..|.++.++.|+..... +
T Consensus 219 -------------~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI---------------------N 264 (374)
T PF13281_consen 219 -------------TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI---------------------N 264 (374)
T ss_pred -------------HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH---------------------H
Confidence 3445565553 12248899999999999987654421 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH--------hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 002199 727 AGNEAFKSGRYTEAVEHYTVAL--------STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY 792 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL--------~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~ 792 (954)
++.++...|.-.+.....++.. +........+.+.+-.++.+..-.|++++|++.+++++.+.|..
T Consensus 265 ~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 265 AATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2333333333222221111111 11111124556666777788888889999999999888887543
No 320
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.11 Score=56.63 Aligned_cols=167 Identities=11% Similarity=0.000 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh-hhhhhhhhhhccCcch
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV-AEKNFASVLADNGSVT 661 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l-~p~~~~~~~~~~~~~~ 661 (954)
...+..+...|+.. +|....++.|...|.+..++..--.+++.+|+...-...+++++.. +++-+-
T Consensus 107 h~~aai~~~~g~~h---~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~---------- 173 (491)
T KOG2610|consen 107 HAKAAILWGRGKHH---EAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC---------- 173 (491)
T ss_pred hhhHHHhhcccccc---HHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH----------
Confidence 33455556677776 6777788999999999888888888999999999999999888876 332211
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 662 YSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAV 741 (954)
Q Consensus 662 ~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi 741 (954)
+ .+..-.++-.+...|-|++|.+.-++++++++.+.- +...++.++...+++.+++
T Consensus 174 ~----sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~W--------------------a~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 174 Y----SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCW--------------------ASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred H----HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchH--------------------HHHHHHHHHHhcchhhhHH
Confidence 0 113345566778899999999999999999886643 3444678888889999999
Q ss_pred HHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 742 EHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAM 786 (954)
Q Consensus 742 ~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL 786 (954)
+...+--..-....-....-|-.-|.+|..-+.|+.|+..|..-|
T Consensus 230 eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 230 EFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 887765433211111222335556788888899999999998755
No 321
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.87 E-value=0.059 Score=50.34 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=78.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccC--------CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCC
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIE--------SRPFAAICFCNRAAALQALGQIADAIADCSLAMA-------LDEN 791 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~--------~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~-------ldP~ 791 (954)
.|.-.+..|-|++|...+.+|+.+... ..-.++.++..|+.++..+|+|++++....++|. ++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 456667889999999999999987432 2246788999999999999999999988888874 4554
Q ss_pred C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 792 Y----TKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 792 ~----~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
. +.+.+.+|..+..+|+.++|+..|+.+-++..
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 3 55678899999999999999999999999854
No 322
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=96.83 E-value=0.0013 Score=73.12 Aligned_cols=67 Identities=31% Similarity=0.412 Sum_probs=53.5
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh--hH-------HHHHHHHHHHCCCCCcccccccccCCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY--DQ-------EQEIRKATKESPQNSHYGRSSDAYGYAC 932 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~--~~-------~e~~~~~~~~l~~~~~~r~~yD~~g~~~ 932 (954)
.-|-|+|||+..++++.+||++||+|..++||||.+.. +. ..++.++|+.+++ ...|..|=.||-++
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd-~k~renyl~yGtPd 172 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD-KKRRENYLNYGTPD 172 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHhcCCCC
Confidence 56789999999999999999999999999999997652 11 2357788999986 44566677788663
No 323
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.78 E-value=0.1 Score=59.59 Aligned_cols=167 Identities=14% Similarity=0.008 Sum_probs=106.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh-----h-cc--Ccc------hhhHHHHHHHHH
Q 002199 607 EALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL-----A-DN--GSV------TYSLARLWRWRL 672 (954)
Q Consensus 607 kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~-----~-~~--~~~------~~~~~~l~a~~~ 672 (954)
..+..+|.....+..++.++..+|++..|.+++++||-.........- . .. ... +..+. .+.+.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff--lal~r 108 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF--LALFR 108 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH--HHHHH
Confidence 456789999999999999999999999999999999855432211111 0 00 000 11121 24455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002199 673 ISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 673 Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~ 752 (954)
....+.+.|-+..|+++.+-++.++|..+... ++..+-...++.++|+--++.++.......
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g------------------~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG------------------VLLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch------------------hHHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 56677788889999999999999988844422 111233344566777777777666554211
Q ss_pred CC-chhhHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHhCCCCH
Q 002199 753 ES-RPFAAICFCNRAAALQALGQI---------------ADAIADCSLAMALDENYT 793 (954)
Q Consensus 753 ~~-~p~~a~~~~~lA~~y~~lg~~---------------eeAi~~~ekAL~ldP~~~ 793 (954)
.. -...+..-+.+|.+++.+++- +.|...+.+|+...|.-.
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 00 011234556677777777777 777777777777766433
No 324
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.78 E-value=0.063 Score=60.86 Aligned_cols=176 Identities=11% Similarity=-0.032 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hcCC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS---LGRMREALEDCMMAA-TVDP 523 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~---lg~~eeAl~~~~kAL-el~P 523 (954)
.+....+=..|....+|+.-|.+.+..-.+ |... ......+-+.+|.++-+ .|+.++|+..+..++ ...+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~-----~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-----VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-----hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 344555556677778888888777765444 2211 01112667788888888 999999999999955 4556
Q ss_pred CcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 524 NFLKVYMRAAKCHLVL---------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~l---------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
.+++.+..+|.+|..+ ...++|+..|.++.+++|+. -.-++.+..+...|.
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~--------------------Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY--------------------YSGINAATLLMLAGH 274 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc--------------------cchHHHHHHHHHcCC
Confidence 7899999999999753 34789999999999998753 112233333333332
Q ss_pred hHH----HHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 595 SEA----ASSALERINEAL-----SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 595 ~~~----a~eAL~~l~kaL-----~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
... ..+....+...+ ...-.+-..+-.++++.+..|++++|++.+++++.+.|..
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 111 001111111111 1112345566678889999999999999999999998754
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.69 E-value=0.16 Score=53.83 Aligned_cols=232 Identities=16% Similarity=0.112 Sum_probs=130.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHH
Q 002199 505 LGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVT 580 (954)
Q Consensus 505 lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~ 580 (954)
....++|+..|+++|++.+.- .+++-.+-.+++.+++|++-++.|.+.|..-..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS---------------------- 97 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS---------------------- 97 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----------------------
Confidence 447899999999999999865 468888899999999999999999998774211
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
|. .++|.+ +.+..+..-+... .+. +--...|+..|+.-.+.
T Consensus 98 -----AV----TrNySE--KsIN~IlDyiStS-~~m----------------~LLQ~FYeTTL~ALkdA----------- 138 (440)
T KOG1464|consen 98 -----AV----TRNYSE--KSINSILDYISTS-KNM----------------DLLQEFYETTLDALKDA----------- 138 (440)
T ss_pred -----HH----hccccH--HHHHHHHHHHhhh-hhh----------------HHHHHHHHHHHHHHHhh-----------
Confidence 00 011111 2222111111111 011 11112222222211100
Q ss_pred hhhHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 661 TYSLARLW--RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 661 ~~~~~~l~--a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
.-.++| ....||.+|+..++|.+-...++++-+........- ...+..+.+..|...-+.|..+++-.
T Consensus 139 --KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed--------D~kKGtQLLEiYAlEIQmYT~qKnNK 208 (440)
T KOG1464|consen 139 --KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED--------DQKKGTQLLEIYALEIQMYTEQKNNK 208 (440)
T ss_pred --hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch--------hhhccchhhhhHhhHhhhhhhhcccH
Confidence 001122 234578999999888877777666544322211100 01112222334444556777778888
Q ss_pred HHHHHHHHHHhhccCC-chh-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCH--HHHHHHHHHHHHhc
Q 002199 739 EAVEHYTVALSTNIES-RPF-AAICFCNRAAALQALGQIADAIADCSLAMALD-----ENYT--KAVSRRAALHEMIR 807 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~-~p~-~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld-----P~~~--~al~~lA~ly~~lg 807 (954)
.-...|+++|.+.... +|. ...+.---|..+++.|+|++|..+|-.|+... |.-. --|+.+|..+++.|
T Consensus 209 kLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 209 KLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 8888899998875321 132 22233334577888999999999998888653 2222 23455566666554
No 326
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.25 Score=52.46 Aligned_cols=165 Identities=11% Similarity=0.085 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLR-KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg-~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
.|+..-..+|.++|.+-.+|..+-.++..++ +..+-++++..+++-+|++++ .|..+-.+.-
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ-----------------vWHHRr~ive 123 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ-----------------VWHHRRVIVE 123 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh-----------------HHHHHHHHHH
Confidence 7888889999999999888877777776654 678889999999999999977 4555556666
Q ss_pred HcCCHH-HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 679 CIGKLE-VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 679 ~lG~~e-eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
.+|++. .-+++.+.++..+..+.. +|...-.+...-+.|+.-+.+..+.|+.+ ..
T Consensus 124 ~l~d~s~rELef~~~~l~~DaKNYH--------------------aWshRqW~~r~F~~~~~EL~y~~~Lle~D----i~ 179 (318)
T KOG0530|consen 124 LLGDPSFRELEFTKLMLDDDAKNYH--------------------AWSHRQWVLRFFKDYEDELAYADELLEED----IR 179 (318)
T ss_pred HhcCcccchHHHHHHHHhccccchh--------------------hhHHHHHHHHHHhhHHHHHHHHHHHHHHh----hh
Confidence 777777 778888888887666655 34445555666677999999998888876 33
Q ss_pred hHHHHHHHHHHHHH-h-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002199 758 AAICFCNRAAALQA-L-----GQIADAIADCSLAMALDENYTKAVSRRAALHEM 805 (954)
Q Consensus 758 ~a~~~~~lA~~y~~-l-----g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~ 805 (954)
+-.+|..+-.+... . -..+.-+.+..+.|.+.|++..+|..|.-++..
T Consensus 180 NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 180 NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 44444433222111 1 134556677888899999999999999888875
No 327
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.18 Score=61.84 Aligned_cols=227 Identities=16% Similarity=0.068 Sum_probs=140.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002199 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYIN 584 (954)
Q Consensus 505 lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~ 584 (954)
.+..+.|.+..+++ +.+..|..+|.+.++.|...+|++.|-++ -+|. .++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika--dDps----------------------~y~e 1138 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPS----------------------NYLE 1138 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcH----------------------HHHH
Confidence 34445555544443 45789999999999999999999999775 2332 2444
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhH
Q 002199 585 CSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSL 664 (954)
Q Consensus 585 ~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~ 664 (954)
........+.|++...-+...++-... | .+-..+-.+|.+.++..+-.+.+ ..|+...
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E-~---~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~------------- 1196 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVRE-P---YIDSELIFAYAKTNRLTELEEFI-----AGPNVAN------------- 1196 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcC-c---cchHHHHHHHHHhchHHHHHHHh-----cCCCchh-------------
Confidence 455555667777544444433333221 2 22233344566677766654433 2343321
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
....|.-.+..+.|+.|.-+|...- .|..++..+...|+|..|+..-
T Consensus 1197 -----i~~vGdrcf~~~~y~aAkl~y~~vS----------------------------N~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1197 -----IQQVGDRCFEEKMYEAAKLLYSNVS----------------------------NFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred -----HHHHhHHHhhhhhhHHHHHHHHHhh----------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 2346888888999998887776542 2344667777778888888777
Q ss_pred HHHHhhc---------------------cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 745 TVALSTN---------------------IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 745 ~kAL~l~---------------------~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
++|-... --+-...+.-+-.+-..|...|-|++-|..++.+|-+.--+...+..||.+|
T Consensus 1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 7763321 0001223444556667788899999999999999988777766667777666
Q ss_pred HHhcCHHHHHHHH
Q 002199 804 EMIRDYTQAASDL 816 (954)
Q Consensus 804 ~~lg~~eeAi~~~ 816 (954)
.+- ++++-.+++
T Consensus 1324 sky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHL 1335 (1666)
T ss_pred Hhc-CHHHHHHHH
Confidence 542 344444443
No 328
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.58 E-value=1.7 Score=55.36 Aligned_cols=102 Identities=15% Similarity=-0.003 Sum_probs=79.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCcH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL----G---RMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l----g---~~eeAl~~~~kALel~P~~~ 526 (954)
..++++..+.|++|+..|++.-..-|.-. .--.+.+..|.+.+.+ | .+++|+..|++. .-.|.-+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 552 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRK-------EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAP 552 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcc-------cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCc
Confidence 34567888899999999999999888753 2237788888887754 2 466777777663 3346667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDR 563 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~ 563 (954)
--|+..|.+|..+|+|+|-+++|.-|++..|..+...
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 7889999999999999999999999999998776443
No 329
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0012 Score=65.96 Aligned_cols=63 Identities=32% Similarity=0.425 Sum_probs=49.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCccccccccc
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAY 928 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~ 928 (954)
..-|.+|.|.+..+..+|++.||++.+..||||+++. .+++.+.++++.|.+.....+.-|.|
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y 120 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVY 120 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4559999999999999999999999999999999866 34566677888887633344555555
No 330
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.57 E-value=0.053 Score=59.84 Aligned_cols=99 Identities=11% Similarity=0.112 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS-LGRMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~-lg~~eeAl~~~~kALel~P~~~~a 528 (954)
+|....+...+.+..+.|..+|.+|++..+-.. .+|...|.+.+. .++.+.|...|+.+++..|.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~----------~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY----------HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T----------HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 577777788888889999999999996555444 788889999777 455666999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
|......+..+++.+.|..+|++++..-|.
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999987554
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.085 Score=53.82 Aligned_cols=103 Identities=17% Similarity=0.060 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
+-+.++..+...+++++|+..++.++....+. . -...+-.+++.+.+.+|.+++|+..++...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De-~----------------lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDE-N----------------LKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhH-H----------------HHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 45678999999999999999999988643211 1 112234468999999999999999887654
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT 793 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~ 793 (954)
.- ...+.....+|.++...|+-++|+..|++++..+++.+
T Consensus 154 ~~-----~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 154 EE-----SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred cc-----cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 33 34566677899999999999999999999999975543
No 332
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.41 Score=50.98 Aligned_cols=130 Identities=10% Similarity=0.051 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYE-EAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~e-eAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
-++++.+.++.+|.+-.+|..+-.+...+|++. .-++.++.+|..+.+++. +|..+-.+...
T Consensus 97 El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH-----------------aWshRqW~~r~ 159 (318)
T KOG0530|consen 97 ELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH-----------------AWSHRQWVLRF 159 (318)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh-----------------hhHHHHHHHHH
Confidence 344555566666666667766666666777666 666777777776666644 44455555566
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCHHHHHHHHHHHHhhccC
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA------FKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~------~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
-+.++.-+.+....++.+--+.... ...--+. ...-..+.-+.+..+.|.+.
T Consensus 160 F~~~~~EL~y~~~Lle~Di~NNSAW--------------------N~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~v-- 217 (318)
T KOG0530|consen 160 FKDYEDELAYADELLEEDIRNNSAW--------------------NQRYFVITNTKGVISKAELERELNYTKDKILLV-- 217 (318)
T ss_pred HhhHHHHHHHHHHHHHHhhhccchh--------------------heeeEEEEeccCCccHHHHHHHHHHHHHHHHhC--
Confidence 6667777777766666543322211 0000000 00011233455666677777
Q ss_pred CchhhHHHHHHHHHHHHH
Q 002199 754 SRPFAAICFCNRAAALQA 771 (954)
Q Consensus 754 ~~p~~a~~~~~lA~~y~~ 771 (954)
|.+..+|..|.-++..
T Consensus 218 --P~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 218 --PNNESAWNYLKGLLEL 233 (318)
T ss_pred --CCCccHHHHHHHHHHh
Confidence 6777788877766664
No 333
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=3.8 Score=55.56 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHH---hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 002199 737 YTEAVEHYTVAL---STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAA 813 (954)
Q Consensus 737 ~eeAi~~y~kAL---~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi 813 (954)
..+-|-.+++++ ..+++.....+.+|...|.+....|+++.|..++-.|.+.. -+.++..+|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 334444444443 23444557789999999999999999999999999998877 5788899999999999999999
Q ss_pred HHHHHHHHHh
Q 002199 814 SDLQRLVSIL 823 (954)
Q Consensus 814 ~~~ekAL~l~ 823 (954)
..+++.+++.
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9999999663
No 334
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=3.4 Score=49.39 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
.+.....+++..|..++....|++|.++|.+.- -.-++..||+.+.+|++ ++.....-
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~------------------~~e~~~ecly~le~f~~----LE~la~~L 848 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG------------------DTENQIECLYRLELFGE----LEVLARTL 848 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------chHhHHHHHHHHHhhhh----HHHHHHhc
Confidence 344556677888888888888888888877532 22355666666666654 33334445
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yeka 552 (954)
|++.+.+-.+|..+...|.-++|++.|-+.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 777777778888888888888888888653
No 335
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.37 E-value=0.092 Score=62.25 Aligned_cols=165 Identities=17% Similarity=0.095 Sum_probs=119.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH-HH----HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 461 NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT-RI----SLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 461 ~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~-y~----~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
.|+-+.++.++.++.+. ++-.. ..-.++.+.+..... ++ .....+.|.+.+...++..|+..-.++..|++
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~---~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRS---PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL 276 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcch---HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 48899999999998772 22110 001122222222222 22 23467889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
+...|+.++|++.|++++..... +.+.. ...++.++..++.+.+|+ +|...+.+.++.+..+
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~--------------~~Ql~-~l~~~El~w~~~~~~~w~---~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSE--------------WKQLH-HLCYFELAWCHMFQHDWE---EAAEYFLRLLKESKWS 338 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhh--------------HHhHH-HHHHHHHHHHHHHHchHH---HHHHHHHHHHhccccH
Confidence 99999999999999998853221 11221 344788899999999999 7888888888887775
Q ss_pred -HHHHHHHHHHHHHccCH-------HHHHHHHHHhchhhh
Q 002199 616 -EKLLEMKADALYMLRKY-------EEAIQLCEHTLPVAE 647 (954)
Q Consensus 616 -~~~~~~lA~~~~~lg~~-------eeAi~~~ekaL~l~p 647 (954)
..+.+..|-|+..+++. ++|..++.++-.+..
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 45567789999999999 777777777655543
No 336
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.31 E-value=0.14 Score=47.91 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCC-c-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cC
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI-K-PLVLCYSNRAATRISLGRMREALEDCMMAAT-------VD 522 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~-~-~la~~~~~lA~~y~~lg~~eeAl~~~~kALe-------l~ 522 (954)
...|...+..|-|++|...|.+|+...-..+...... . .-+.+|..++.++..+|+|++++....++|. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 3445677888999999999999998765443111111 1 1378999999999999999999998888885 44
Q ss_pred CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 523 PNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 523 P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
.+. +.+.+.+|..+..+|+.++|+..|+.+-++
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444 456678899999999999999999998774
No 337
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.13 Score=55.74 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-H
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-L 526 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-~ 526 (954)
.+.-...+......|++.+|...|..++...|++. .+...++.||+..|+.+.|...+...-.-.... .
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----------~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~ 203 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS----------EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAA 203 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc----------hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHH
Confidence 34455678888999999999999999999999997 899999999999999999888776532221111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
..+...-..+.+.....+. ..+++.+..+|++ ....+.++..+...|+++ .|++.+-
T Consensus 204 ~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd-------------------~~aa~~lA~~~~~~g~~e---~Ale~Ll 260 (304)
T COG3118 204 HGLQAQIELLEQAAATPEI-QDLQRRLAADPDD-------------------VEAALALADQLHLVGRNE---AALEHLL 260 (304)
T ss_pred HHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCHH---HHHHHHH
Confidence 1100111222222222221 2334445556654 556677777888888887 6677666
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHHccCHH
Q 002199 607 EALSISS--CSEKLLEMKADALYMLRKYE 633 (954)
Q Consensus 607 kaL~~~P--~~~~~~~~lA~~~~~lg~~e 633 (954)
..+..+- .+......+-.++...|.-+
T Consensus 261 ~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 261 ALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 6665542 33445555555555555333
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.11 E-value=0.008 Score=43.23 Aligned_cols=30 Identities=33% Similarity=0.368 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 494 CYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 494 ~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555554
No 339
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.09 E-value=0.0066 Score=61.61 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=48.8
Q ss_pred cchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccc
Q 002199 866 LDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSS 925 (954)
Q Consensus 866 ~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~y 925 (954)
.+||.++|+++. .+...+++.|+++..++|||+..... ....++++|.+|.+ |-.|+.|
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkd-Pl~RA~Y 71 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKD-PILRAEA 71 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCC-hHHHHHH
Confidence 479999999877 77899999999999999999975442 12468899999986 7778877
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.06 E-value=0.012 Score=42.25 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
.+|+.+|.+|..+|++++|+.+|++++++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3556666666666666666666666666654
No 341
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=2.1 Score=51.01 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY----------MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~----------~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
.+|..+|...+..-.++-|...|-++-.. |. .+.. ..+|.+-.--|+|++|...|-.+=+.+-
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL----- 765 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL----- 765 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh-----
Confidence 78888988877766666666666554221 11 1111 3445555667899999988865422110
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 002199 563 RRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI--SSCSEKLLEMKADALYMLRKYEEAIQLCE 640 (954)
Q Consensus 563 ~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~--~P~~~~~~~~lA~~~~~lg~~eeAi~~~e 640 (954)
..+ .+...|+|- ..++.++..-.- +..-..++..+|..+..+..|++|.++|.
T Consensus 766 ---Aie-------------------lr~klgDwf---rV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 766 ---AIE-------------------LRKKLGDWF---RVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred ---hHH-------------------HHHhhhhHH---HHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 111222222 122211111000 11124577888999999999999999988
Q ss_pred Hhch
Q 002199 641 HTLP 644 (954)
Q Consensus 641 kaL~ 644 (954)
+.-.
T Consensus 821 ~~~~ 824 (1189)
T KOG2041|consen 821 YCGD 824 (1189)
T ss_pred hccc
Confidence 7643
No 342
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.013 Score=53.17 Aligned_cols=50 Identities=32% Similarity=0.347 Sum_probs=46.6
Q ss_pred hhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCC
Q 002199 868 FYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQ 917 (954)
Q Consensus 868 yYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~ 917 (954)
--.||||.+..+..-||+++|+..+..|||+.-++=...+|+++...+..
T Consensus 58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEG 107 (112)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999999988865
No 343
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.01 E-value=0.32 Score=54.76 Aligned_cols=82 Identities=22% Similarity=0.127 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHH-HHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLI-SKSYF 678 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~L-g~~y~ 678 (954)
.-+..|++||+.+|.+..++..+-.+.....+-++....+++++...|.+.. +|.-++. -...+
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~---------------LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE---------------LWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH---------------HHHHHHHHHHHHh
Confidence 5677888999999999999998888888999999999999999999887644 3432221 11223
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 002199 679 CIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l 696 (954)
..-.+......|.+++..
T Consensus 114 ~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred ccCcHHHHHHHHHHHHHH
Confidence 334577888888888764
No 344
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=2.7 Score=49.20 Aligned_cols=68 Identities=15% Similarity=0.007 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCC-CHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMAL------DEN-YTKAVSRRAALHEMIRD-YTQAASDLQRLVSIL 823 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l------dP~-~~~al~~lA~ly~~lg~-~eeAi~~~ekAL~l~ 823 (954)
......+..+|.++..+|+-..|..+|..+++. ++- .|-|+|.+|.+|..++. ..+|..++.+|-...
T Consensus 446 Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 446 DDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 345556778899999999999999999988843 111 37899999999999999 999999999998774
No 345
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.87 E-value=5 Score=46.68 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHH
Q 002199 467 AEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE-IENA 545 (954)
Q Consensus 467 Ai~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~-~eeA 545 (954)
-+..|+.|+...+.+. .+|.+......+.+.+.+--..|.++|..+|+++..|...|.-.+..+. .+.|
T Consensus 90 Iv~lyr~at~rf~~D~----------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~sa 159 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDV----------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESA 159 (568)
T ss_pred HHHHHHHHHHhcCCCH----------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHH
Confidence 4567888888888775 7788777777777778888889999999999999999888888877776 8888
Q ss_pred HHHHHHHHhhchhhh
Q 002199 546 QHYYHKLLNSAAAVC 560 (954)
Q Consensus 546 l~~yekaL~l~P~~~ 560 (954)
...|.++|+.+|+.+
T Consensus 160 RalflrgLR~npdsp 174 (568)
T KOG2396|consen 160 RALFLRGLRFNPDSP 174 (568)
T ss_pred HHHHHHHhhcCCCCh
Confidence 888999999888765
No 346
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.83 E-value=0.017 Score=42.53 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+|..||.+|..+|+|++|+.+|+++|.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467788888888888888888888776643
No 347
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.81 E-value=1.8 Score=47.79 Aligned_cols=177 Identities=15% Similarity=0.025 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYML----RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l----g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
.++..+..+-.. .++.....++.+|..- .+..+|+.+|..+....-.. +.+.||.
T Consensus 59 ~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~-------------------a~~~lg~ 117 (292)
T COG0790 59 KALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE-------------------ALFNLGL 117 (292)
T ss_pred HHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH-------------------HHHhHHH
Confidence 555555555431 2335667777777663 36788999998655443211 4567888
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----C--CHHHHHHHH
Q 002199 676 SYFC----IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-----G--RYTEAVEHY 744 (954)
Q Consensus 676 ~y~~----lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-----g--~~eeAi~~y 744 (954)
+|.. ..++.+|..+|+++........ ......+|..|..- - +...|+..|
T Consensus 118 ~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~ 178 (292)
T COG0790 118 MYANGRGVPLDLVKALKYYEKAAKLGNVEA-------------------ALAMYRLGLAYLSGLQALAVAYDDKKALYLY 178 (292)
T ss_pred HHhcCCCcccCHHHHHHHHHHHHHcCChhH-------------------HHHHHHHHHHHHcChhhhcccHHHHhHHHHH
Confidence 8876 4589999999999987643221 11122344444332 1 334799999
Q ss_pred HHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------------
Q 002199 745 TVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR------------- 807 (954)
Q Consensus 745 ~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg------------- 807 (954)
.++-... ...+.+++|.+|.. ..++.+|+.+|.++.+... ..+.+.++ ++...|
T Consensus 179 ~~aa~~~------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 179 RKAAELG------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred HHHHHhc------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 9987765 67788888988765 3489999999999999876 88889999 666665
Q ss_pred --CHHHHHHHHHHHHHHhhh
Q 002199 808 --DYTQAASDLQRLVSILEN 825 (954)
Q Consensus 808 --~~eeAi~~~ekAL~l~p~ 825 (954)
+...|...+..+....+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 250 EEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCh
Confidence 777788888777766433
No 348
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=95.78 E-value=0.011 Score=59.09 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCh---------hHHHHHHHHHHHCCCCCcccccccc
Q 002199 878 DTAADIKKAYRKAALKHHPDKRSEY---------DQEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 878 a~~~eIkkAYrklAl~~HPDK~~~~---------~~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
.+..+|+++||+++.+||||+.... .....++++|++|.+ |..|+.|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~-p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKD-PLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCC-hhhhHHHHH
Confidence 4678899999999999999985432 223578899999986 888999974
No 349
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.78 E-value=6.1 Score=47.00 Aligned_cols=340 Identities=13% Similarity=0.062 Sum_probs=187.7
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH-HHHHHHcCCHH
Q 002199 431 EEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR-AATRISLGRMR 509 (954)
Q Consensus 431 e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l-A~~y~~lg~~e 509 (954)
+.+...........|-.---|..-|..-++.|..+.++..|++++...|-.- .+|... +.+--..|+.+
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv----------dlW~~Y~~f~~n~~~d~~ 131 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV----------DLWLSYLAFLKNNNGDPE 131 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHhccCCCHH
Confidence 3333333334445566666788888888999999999999999999888653 444433 33333456666
Q ss_pred HHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH-----HHhHHH
Q 002199 510 EALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK-----AQKVTE 581 (954)
Q Consensus 510 eAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~-----~~~~~~ 581 (954)
.-...|++|+...-.+ ...|-..-......+++..-...|++.|+. |....++. ...-...+.. ......
T Consensus 132 ~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-P~~~~~~~-f~~f~~~l~~~~~~~l~~~d~ 209 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-PLHQLNRH-FDRFKQLLNQNEEKILLSIDE 209 (577)
T ss_pred HHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-hhhHhHHH-HHHHHHHHhcCChhhhcCHHH
Confidence 6667778887765432 233333334445667778888888888774 32111110 0000000000 000000
Q ss_pred HHHHHHHHHHh---cChHHHHHHHHH-HHHHHhcCCCCHHHHHHHH-------HHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 582 YINCSGKLLEQ---KTSEAASSALER-INEALSISSCSEKLLEMKA-------DALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 582 ~l~~a~~ll~~---g~~~~a~eAL~~-l~kaL~~~P~~~~~~~~lA-------~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
........... .....-.+-+.. ........+........+. .++.......+.+-.++..+...-...
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv 289 (577)
T KOG1258|consen 210 LIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV 289 (577)
T ss_pred HHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc
Confidence 00000000000 000000000000 0011111111111111111 222223333444444554443311110
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
.....+.+..|......-...|+++...-.|++|+---... ...|...+..
T Consensus 290 ---------kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y--------------------~efWiky~~~ 340 (577)
T KOG1258|consen 290 ---------KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY--------------------DEFWIKYARW 340 (577)
T ss_pred ---------CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh--------------------HHHHHHHHHH
Confidence 01222333456666667778999999999999986432211 1234444555
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
....|+..-|-..+..+.++.. +..+.++..-+..-...|++..|...++++..--|....+-+..+.....+|+.+
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~---k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHV---KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcC---CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence 5556888888888888877753 5566677767777788899999999999999877999999999999999999999
Q ss_pred HHHH
Q 002199 811 QAAS 814 (954)
Q Consensus 811 eAi~ 814 (954)
.+..
T Consensus 418 ~~~~ 421 (577)
T KOG1258|consen 418 DANY 421 (577)
T ss_pred hhhH
Confidence 8885
No 350
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=5.7 Score=46.67 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCC
Q 002199 466 EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGE 541 (954)
Q Consensus 466 eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~ 541 (954)
...+.+.......|+++ ..+.+.|..+...|+.+.|+..++..+. +.. .-.++.+|.++.-+.+
T Consensus 251 ~~~~~Ll~~~~~~p~ga----------~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~ 318 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGA----------LWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQ 318 (546)
T ss_pred HHHHHhHHHHHhCCCCc----------cHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556678876 7788888899999998888888888887 332 3467788999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 002199 542 IENAQHYYHKLLNSA 556 (954)
Q Consensus 542 ~eeAl~~yekaL~l~ 556 (954)
|..|..++.....+.
T Consensus 319 ~~~aad~~~~L~des 333 (546)
T KOG3783|consen 319 YSRAADSFDLLRDES 333 (546)
T ss_pred HHHHhhHHHHHHhhh
Confidence 999999998877653
No 351
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0074 Score=63.11 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=54.3
Q ss_pred ccCCCcchhhhhccc---cCCCHHHHHHHHHHHHHhhCCCCC-----CCh-hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 861 KKGEPLDFYLILGVK---ASDTAADIKKAYRKAALKHHPDKR-----SEY-DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 861 k~~~~~dyYkiLgv~---~~a~~~eIkkAYrklAl~~HPDK~-----~~~-~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
+.....|+|.+||++ ..+.+..|.+++++..++||||+. ... +.+.-|..++++|++ +..|..||.--..
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D-~~~R~qyDS~df~ 116 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD-RKLRLQYDSNDFD 116 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhcc-HHHHhhccccccc
Confidence 334457899999986 456678899999999999999996 222 345677788999986 8899999975443
No 352
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.75 E-value=0.39 Score=54.89 Aligned_cols=166 Identities=16% Similarity=0.049 Sum_probs=105.0
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHH-----HHHH--HHH---HHHHHHhHHHHHHHH
Q 002199 517 MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRR-----ITIE--AAD---GLQKAQKVTEYINCS 586 (954)
Q Consensus 517 kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~-----~~~e--a~~---~l~~~~~~~~~l~~a 586 (954)
..|..+|-+..+++.++.++..+|++..|.+.+++||-.-.......- .... ..- ....-.-....+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 346778999999999999999999999999999998764221100000 0000 000 000111133445555
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHccCHHHHHHHHHHhchhhhhh-hhhhhhccCcchhh
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSC-SEKL-LEMKADALYMLRKYEEAIQLCEHTLPVAEKN-FASVLADNGSVTYS 663 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~-~~~~-~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~-~~~~~~~~~~~~~~ 663 (954)
..+.++|-+. .|++...-.+.++|. ++-. ++.+=...++.++|+--+..++........+ .....+
T Consensus 111 ~~L~~RG~~r---TAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-------- 179 (360)
T PF04910_consen 111 QSLGRRGCWR---TALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-------- 179 (360)
T ss_pred HHHHhcCcHH---HHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--------
Confidence 6666778887 899999999999998 6553 3444445567788888888887655531111 000000
Q ss_pred HHHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCC
Q 002199 664 LARLWRWRLISKSYFCIGKL---------------EVALDLLQKLEQVGS 698 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~---------------eeAl~~l~kal~l~p 698 (954)
..+.++.+++.+++- +.|...+.+|+...|
T Consensus 180 -----~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 180 -----FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred -----HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 234567777878877 899999999987755
No 353
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.72 E-value=0.047 Score=44.03 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
.+++.+|..+.++|+|++|..+++.+|+++|++.++......+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46788999999999999999999999999999988776554443
No 354
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.69 E-value=0.065 Score=59.99 Aligned_cols=102 Identities=9% Similarity=0.087 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCccccc--------CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGC--------CIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~--------~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.-|..+|++++|..|+--|..||+++.+-...+. -..--..+--.+..||+.+++.+.|+....+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 3456678888888888888888887644321111 11112445567899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
+..-+++.|.|+..+.+|.+|...+--+.-
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887765533
No 355
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.37 E-value=1.9 Score=47.63 Aligned_cols=189 Identities=12% Similarity=0.025 Sum_probs=128.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL----GRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l----g~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.+......+++..|+..|..+-.... ......++.+|..- .+..+|+..|..+ .....+.+.
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~~------------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~ 112 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELGD------------AAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEAL 112 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcCC------------hHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHH
Confidence 33445577899999999998877221 15777888887754 4688899999944 445678899
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cChHHHHHH
Q 002199 530 MRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ----KTSEAASSA 601 (954)
Q Consensus 530 ~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~----g~~~~a~eA 601 (954)
+.||.+|.. ..++.+|..+|+++.+..-... ....+.++..+..- +-...-..|
T Consensus 113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A 174 (292)
T COG0790 113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA------------------ALAMYRLGLAYLSGLQALAVAYDDKKA 174 (292)
T ss_pred HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH------------------HHHHHHHHHHHHcChhhhcccHHHHhH
Confidence 999999988 4599999999999988743211 11122223222221 111111367
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 602 LERINEALSISSCSEKLLEMKADALYM----LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~----lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
+..|.++-... ++.....+|.+|.. ..++.+|+.+|.++.+... .. +++.++ ++
T Consensus 175 ~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~-----------------a~~~~~-~~ 232 (292)
T COG0790 175 LYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GA-----------------ACYNLG-LM 232 (292)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HH-----------------HHHHHH-HH
Confidence 78887776655 77888889988765 4489999999999988765 11 566777 66
Q ss_pred HHcC---------------CHHHHHHHHHHHHhh
Q 002199 678 FCIG---------------KLEVALDLLQKLEQV 696 (954)
Q Consensus 678 ~~lG---------------~~eeAl~~l~kal~l 696 (954)
+..| +...|...+..+...
T Consensus 233 ~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 233 YLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 6555 666666666666544
No 356
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.24 E-value=0.062 Score=43.34 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
.+++.+|..++++|+|++|+.+++.+|+++|++..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 467888888888999999999999999988888777655443
No 357
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.16 E-value=0.32 Score=49.78 Aligned_cols=106 Identities=11% Similarity=0.026 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
....+...++..+|..|++.|+++.|++.|.++....... ...+.+++++..+.+..+++..+...+.++-.+
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~-------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP-------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH-------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455667889999999999999999999999988876543 345788899999999999999999999988765
Q ss_pred CCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 522 DPN--F----LKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 522 ~P~--~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
-.. + .+.....|..++..++|.+|.+.|-.++.
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 422 2 22344457788889999999999877654
No 358
>PRK10941 hypothetical protein; Provisional
Probab=95.16 E-value=0.14 Score=55.87 Aligned_cols=70 Identities=11% Similarity=-0.076 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
+...+.++-.+|+..++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|+..++..++..|+.+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 4577888999999999999999999999999999999999999999999999999999999999999764
No 359
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.12 E-value=0.031 Score=39.61 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
++++.+|.++..+|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36677777777777777777777777777553
No 360
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=8.7 Score=45.85 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.+...|...|+..+|..+++.|...+...|.+. ....++....+++.||+.+.+.+.|++.++.|-+.+|..+-..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~----~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN----YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 455677888999999999999999999998875 3455688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
+.+-.+...-+.-++|+.+..+.....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 999999999999999999998877653
No 361
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.08 E-value=4.4 Score=46.40 Aligned_cols=314 Identities=10% Similarity=0.021 Sum_probs=170.7
Q ss_pred HHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 471 YTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYH 550 (954)
Q Consensus 471 y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~ye 550 (954)
++.-|+-+|.+- ..|+.+-.-|..++.+++-.+.|++...-.|-...+|...-.--+...+|..-...|.
T Consensus 31 LRerIkdNPtnI----------~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 31 LRERIKDNPTNI----------LSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred HHHHhhcCchhH----------HHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 455677889885 8999999999999999999999999999888887777665555555677777777777
Q ss_pred HHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--hcC-hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002199 551 KLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE--QKT-SEAASSALERINEALSISSCSEKLLEMKADALY 627 (954)
Q Consensus 551 kaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~--~g~-~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~ 627 (954)
++|...-.. ..+..++...+..-. .|+ --...+|.+..-..+..+|.....|...+..+.
T Consensus 101 rCL~k~l~l-----------------dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle 163 (660)
T COG5107 101 RCLKKSLNL-----------------DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLE 163 (660)
T ss_pred HHHhhhccH-----------------hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 777632110 001111111111100 010 111224555555555567777777766655443
Q ss_pred H---------ccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 628 M---------LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 628 ~---------lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
. +.+.+.-...|.++|..--.+.+..-.++.......-++-+.-..| -..--|-.|...|++...+..
T Consensus 164 ~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvg---e~sp~ym~ar~~yqe~~nlt~ 240 (660)
T COG5107 164 YIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVG---ETSPIYMSARQRYQEIQNLTR 240 (660)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHhc
Confidence 3 3345556677888877644443321111110000000000000000 011224566666666554421
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHc-CCHHHHH-HHHHHHHhhccCCchhhHHHHHHHHHHHHH
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSA-----GNEAFKS-GRYTEAV-EHYTVALSTNIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~l-----G~~~~~~-g~~eeAi-~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~ 771 (954)
.-....+-.++......... -..|.+. -+-+... +-..+-| -.|++++..- +..+.+|+.....+..
T Consensus 241 Gl~v~~~~~~Rt~nK~~r~s--~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~----~~~~evw~dys~Y~~~ 314 (660)
T COG5107 241 GLSVKNPINLRTANKAARTS--DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYF----YYAEEVWFDYSEYLIG 314 (660)
T ss_pred cccccCchhhhhhccccccc--cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhh
Confidence 11000000000000000000 0001100 0111111 1222222 2356666666 7888899988888889
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 772 LGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
.++-+.|+....+++...|. ..+.++.+|....+-+.-..+|++.++-+
T Consensus 315 isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 315 ISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred ccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 99999999999998888877 66788888888888777777777766543
No 362
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.08 E-value=21 Score=48.90 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC------
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD-EN------ 791 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld-P~------ 791 (954)
.....|.+.|.+....|+++.|-.++-.|.+.. .+.++..+|..++..|+-..|+..+++.++++ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 345678889999999999999999998887764 56889999999999999999999999999764 22
Q ss_pred ----C------HHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhhh
Q 002199 792 ----Y------TKAVSRRAALHEMIRDY--TQAASDLQRLVSILEN 825 (954)
Q Consensus 792 ----~------~~al~~lA~ly~~lg~~--eeAi~~~ekAL~l~p~ 825 (954)
. ..+.+.++.-....+++ .+-+.+|+.+.+++|.
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 1 12333334444444553 3556788888888663
No 363
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=6.6 Score=43.54 Aligned_cols=289 Identities=16% Similarity=0.106 Sum_probs=163.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHH
Q 002199 495 YSNRAATRISLGRMREALEDCMMAATV--DPN--------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRR 564 (954)
Q Consensus 495 ~~~lA~~y~~lg~~eeAl~~~~kALel--~P~--------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~ 564 (954)
...++.......++++++..|...+.. -|. .-.+...+|.+|...|++.+-.......-..-..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~------ 80 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSS------ 80 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH------
Confidence 366777777888889999999999874 121 1346788999999999998776666554332111
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHhcCC----C--CHHHHHHHHHHHHHccCHHHHHH
Q 002199 565 ITIEAADGLQKAQKVTEYINCSGKLLE-QKTSEAASSALERINEALSISS----C--SEKLLEMKADALYMLRKYEEAIQ 637 (954)
Q Consensus 565 ~~~ea~~~l~~~~~~~~~l~~a~~ll~-~g~~~~a~eAL~~l~kaL~~~P----~--~~~~~~~lA~~~~~lg~~eeAi~ 637 (954)
+.++......-.+...... ....+ .-+..+..+++-.. . ...+-..+..+|+..++|.+|+.
T Consensus 81 --------v~KakaaKlvR~Lvd~~~~~~~~~~---~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAla 149 (411)
T KOG1463|consen 81 --------VSKAKAAKLVRSLVDMFLKIDDGTG---DQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALA 149 (411)
T ss_pred --------hhhHHHHHHHHHHHHHHccCCCCcc---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111110000001111110 00111 11111111111100 0 01233457889999999999998
Q ss_pred HHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHH
Q 002199 638 LCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGT 717 (954)
Q Consensus 638 ~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~ 717 (954)
+....+..-..--.- ..+ +..+..-..+|+.+.+..+|...+..|-.....- ..+..+.
T Consensus 150 L~~~L~rElKKlDDK---------~lL--vev~llESK~y~~l~Nl~KakasLTsART~Anai--YcpPqlQ-------- 208 (411)
T KOG1463|consen 150 LINDLLRELKKLDDK---------ILL--VEVHLLESKAYHALRNLPKAKASLTSARTTANAI--YCPPQLQ-------- 208 (411)
T ss_pred HHHHHHHHHHhcccc---------cce--eeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc--ccCHHHH--------
Confidence 887776543221000 000 1134455788899999999988887764432110 0011011
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhCCCCH
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQIAD--AIADCSLAMALDENYT 793 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~~ee--Ai~~~ekAL~ldP~~~ 793 (954)
+..=..-|..+....+|..|..+|=+|++-.. +.+......+-.+-.|-..++..++ ++-.-..+++......
T Consensus 209 ---a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 209 ---ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDI 285 (411)
T ss_pred ---HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcch
Confidence 11112246777777999999999999987532 2223334444444555556666655 4444556777788889
Q ss_pred HHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhh
Q 002199 794 KAVSRRAALHEM--IRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 794 ~al~~lA~ly~~--lg~~eeAi~~~ekAL~l~p 824 (954)
.++...|.++.. +.+|+.|+..|..-|.-+|
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 999999888854 5678888888877665543
No 364
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.01 E-value=0.04 Score=40.52 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
+|..||.+|..+|+|++|+.+|+++|.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467888888888888888888888776543
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.98 E-value=0.16 Score=53.67 Aligned_cols=92 Identities=18% Similarity=0.139 Sum_probs=69.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhcc---CCchhhHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHhCC------CCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNI---ESRPFAAICFCNRAAALQALGQIA-------DAIADCSLAMALDE------NYTK 794 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~---~~~p~~a~~~~~lA~~y~~lg~~e-------eAi~~~ekAL~ldP------~~~~ 794 (954)
+.....+++|++.|.-|+-... ..+...+.++..+|++|..+++.+ .|+..|.++++... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3445678899999988875421 222467889999999999999854 45555555554432 2357
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.++.+|.++.++|++++|+.+|.+++..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 8889999999999999999999999976
No 366
>PRK10941 hypothetical protein; Provisional
Probab=94.90 E-value=0.2 Score=54.77 Aligned_cols=80 Identities=14% Similarity=-0.017 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
....+.++=..|.+.++++.|+.+.+..+.+.|+++ .-+..+|.+|.++|.+..|+.+++..++..|+.+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp----------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP----------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 445667777889999999999999999999999997 7889999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 002199 527 KVYMRAAKCH 536 (954)
Q Consensus 527 ~a~~~LA~iy 536 (954)
.+.....++.
T Consensus 250 ~a~~ik~ql~ 259 (269)
T PRK10941 250 ISEMIRAQIH 259 (269)
T ss_pred hHHHHHHHHH
Confidence 8776655543
No 367
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.68 E-value=0.12 Score=55.74 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
...+...++.|+.++|..+|+.|+.+.|.++ .++...|.......+.-+|-.+|-+||.+.|.+.+++.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p----------~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNP----------QILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCH----------HHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3445566788999999999999999999997 899999999988899999999999999999999988887
Q ss_pred HHHH
Q 002199 532 AAKC 535 (954)
Q Consensus 532 LA~i 535 (954)
+++.
T Consensus 190 R~RT 193 (472)
T KOG3824|consen 190 RART 193 (472)
T ss_pred hhcc
Confidence 7654
No 368
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.64 E-value=0.059 Score=38.14 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~ 481 (954)
++++.+|.+++..|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999973
No 369
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=2.8 Score=42.17 Aligned_cols=150 Identities=13% Similarity=0.065 Sum_probs=101.2
Q ss_pred HHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 622 lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
-+.-+...+..++|+..|..+-+..-..++ +.+....+.+....|+...|+..|..+-.-.+...
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~Yp---------------vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~ 128 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYP---------------VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ 128 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcch---------------HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc
Confidence 344556677888888887776555444433 23566778888999999999999998866544332
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIAD 781 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~ 781 (954)
. .+. .+....+.++...|-|++-....+.. ..+..|....+...||.+-++.|++..|...
T Consensus 129 ~-----~rd-----------~ARlraa~lLvD~gsy~dV~srvepL---a~d~n~mR~sArEALglAa~kagd~a~A~~~ 189 (221)
T COG4649 129 I-----GRD-----------LARLRAAYLLVDNGSYDDVSSRVEPL---AGDGNPMRHSAREALGLAAYKAGDFAKAKSW 189 (221)
T ss_pred h-----hhH-----------HHHHHHHHHHhccccHHHHHHHhhhc---cCCCChhHHHHHHHHhHHHHhccchHHHHHH
Confidence 1 111 12223567778888888755544332 2223377777888889999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHh
Q 002199 782 CSLAMALDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 782 ~ekAL~ldP~~~~al~~lA~ly~~l 806 (954)
|..+.. +...+....+++.+.+.+
T Consensus 190 F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 190 FVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHHc-cccCcHHHHHHHHHHHHH
Confidence 988766 666677777777766543
No 370
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.54 E-value=0.27 Score=45.77 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=74.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcC
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR-----------MREALEDCMMAATVD 522 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~-----------~eeAl~~~~kALel~ 522 (954)
++..+++.|++-+|+++.+..+...+++.. ...++...|.+++.+.. .-.|++.|.++..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-------~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES-------SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc-------hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 577899999999999999999999888751 12456666777765543 356899999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
|..+..++.+|.-+-..-.|++++.-.+++|.+
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 999888888887776667777777777777664
No 371
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.48 E-value=0.71 Score=48.76 Aligned_cols=109 Identities=14% Similarity=-0.031 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhhcc
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT-------EAVEHYTVALSTNI 752 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e-------eAi~~y~kAL~l~~ 752 (954)
.-.+++|++.|.-|+-..... -......+..+..+|.+|...++.+ .|++.|.+|+....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-------------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~ 156 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-------------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED 156 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345777888777765431100 0011233455666788888888754 45555555555432
Q ss_pred --CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q 002199 753 --ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-TKAVSRRAA 801 (954)
Q Consensus 753 --~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-~~al~~lA~ 801 (954)
...-....+++.+|.++.++|++++|+.+|.+++...... ...+..+|+
T Consensus 157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 157 FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 2234567789999999999999999999999999764322 234555544
No 372
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.051 Score=66.31 Aligned_cols=52 Identities=31% Similarity=0.298 Sum_probs=42.7
Q ss_pred CcchhhhhccccCC----CHHHHHHHHHHHHHhhCCCCCCCh-hHHHHHHHHHHHCC
Q 002199 865 PLDFYLILGVKASD----TAADIKKAYRKAALKHHPDKRSEY-DQEQEIRKATKESP 916 (954)
Q Consensus 865 ~~dyYkiLgv~~~a----~~~eIkkAYrklAl~~HPDK~~~~-~~~e~~~~~~~~l~ 916 (954)
..+-|+||.++-.. ....|+++|+|+|.+|||||++.- +++++.+++|+-+.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 34679999887443 336799999999999999999865 67899999998886
No 373
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.26 E-value=0.14 Score=55.32 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ 801 (954)
......+....+.|+.++|...|+.|+.+. |.++.++...|......++.-+|-.+|-+||.++|.+.+|+.++++
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlala----P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALA----PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcC----CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 333445666778899999999999999999 8888999999999988899999999999999999999999988875
Q ss_pred HH
Q 002199 802 LH 803 (954)
Q Consensus 802 ly 803 (954)
..
T Consensus 193 T~ 194 (472)
T KOG3824|consen 193 TT 194 (472)
T ss_pred cc
Confidence 43
No 374
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.22 E-value=0.44 Score=44.38 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=75.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHHhCCCCHHH
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ-----------IADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~-----------~eeAi~~~ekAL~ldP~~~~a 795 (954)
++..++..|++-+|++..+..+....+. ...+.++..-|.++..+.. +-.|++.|.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 4667899999999999999999887543 2233677777887766542 557889999999999999888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 796 VSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 796 l~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
++.+|.-+-...-|++++.--+++|.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888888877777788888888887776
No 375
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.20 E-value=2.7 Score=47.36 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=101.8
Q ss_pred HHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 468 EDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR------------MREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 468 i~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~------------~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
...|++.++.+|.+. .+|..+....-.+-. .+.-+..|++||+.+|++...+..+-.+
T Consensus 5 ~~el~~~v~~~P~di----------~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~ 74 (321)
T PF08424_consen 5 TAELNRRVRENPHDI----------EAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEE 74 (321)
T ss_pred HHHHHHHHHhCcccH----------HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 346888999999986 788877765554432 4677889999999999999999998888
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHHhc
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS----SALERINEALSI 611 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~----eAL~~l~kaL~~ 611 (954)
.......++....+++++..+|....-- ..++......+..-.+.... ++|..+......
T Consensus 75 ~~~~~~~~~l~~~we~~l~~~~~~~~LW----------------~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~ 138 (321)
T PF08424_consen 75 GEKVWDSEKLAKKWEELLFKNPGSPELW----------------REYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSG 138 (321)
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCChHHH----------------HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988653211 11111111111111122111 222222222211
Q ss_pred C-----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 612 S-----------SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 612 ~-----------P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
. ..-..++..+...+...|..+.|+..++..++++
T Consensus 139 ~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 139 RMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 1 0113466677888889999999999999999886
No 376
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.059 Score=55.17 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=35.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD 903 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~ 903 (954)
-..||++|||...++..+++.+|.+|+.++|||.++...
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a 84 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA 84 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc
Confidence 456999999999999999999999999999999987653
No 377
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.042 Score=60.60 Aligned_cols=106 Identities=27% Similarity=0.277 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----------C----CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNI-----------E----SRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-----------~----~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
...+.|...++.++|..|+.-|.+++..-. + .......++.+++.+-++++.+..|+.....+++
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 344568888999999999999999876421 0 1123345677899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 788 ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.++....+++.++..+..+.++++|+++++.+....|++..
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 99999999999999999999999999999999999666544
No 378
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.10 E-value=0.54 Score=59.99 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=132.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 619 ~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
....+......+.+.+|.+ .-+++.+..+-.... ...... .|..|+.++..++++++|+..-+++.-+..
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~-------h~~~~~--~~~~La~l~~~~~d~~~Ai~~~~ka~ii~e 1004 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVL-------HPEVAS--KYRSLAKLSNRLGDNQEAIAQQRKACIISE 1004 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhc-------chhHHH--HHHHHHHHHhhhcchHHHHHhcccceeeec
Confidence 3445666777778888877 555554433211110 111112 567889999999999999999888754321
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----cCCchhhHHHHHHHHHHHHHhcC
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN----IESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~----~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
... -.........+.+++...+..+....|+..+.+++.+. ...+|.-+.+..+++.++..+++
T Consensus 1005 R~~------------g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e 1072 (1236)
T KOG1839|consen 1005 RVL------------GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE 1072 (1236)
T ss_pred hhc------------cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH
Confidence 110 11123445567778888888899999999999988763 24568888889999999999999
Q ss_pred HHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 775 IADAIADCSLAMALDE--------NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP--------~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
++.|+.+.+.|+.+.- .....+..+++++..++++..|+...+....+++..
T Consensus 1073 ~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1073 ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence 9999999999998642 234567777888888888888888888888886654
No 379
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.08 E-value=4.2 Score=44.69 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh--------ccCcchhhHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA--------DNGSVTYSLARLWRWR 671 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~--------~~~~~~~~~~~l~a~~ 671 (954)
+-|.....+++++|..+.+|..+|+--. --..+|..+++++|+.....+..... +.....+.-..+++-.
T Consensus 202 ~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKR 279 (556)
T KOG3807|consen 202 ARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKR 279 (556)
T ss_pred HHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHH
Confidence 4455666788899998888888776322 23556777777777655433221000 0000012223345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHH
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE---AFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~---~~~~g~~eeAi~~y~kAL 748 (954)
.|+.+-.++|+..+|++.++...+-.|. ..++.....+....-++.+|...-.+ |-.......|--+|..|+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl-----~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPL-----LTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
Confidence 7899999999999999999998775551 11222222222222222222211111 223333445555666554
Q ss_pred hhcc-CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 749 STNI-ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 749 ~l~~-~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
-... -.....+..-..+|..-.. -.|++...+|++.+|.-+..++.+-
T Consensus 355 LK~RAVa~kFspd~asrRGLS~AE----~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 355 LKTRAVSEKFSPETASRRGLSTAE----INAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHhhcCchhhhhccccHHH----HHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 3210 0001223333333322222 3578889999999999888766553
No 380
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.05 E-value=0.3 Score=62.25 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD--- 522 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~--- 522 (954)
..+....+.|......+.+.+|.+ .-+++.+..+-. +..+...+.+|..++..+..++++++|+....++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~--~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM--GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh--hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh
Confidence 456677888888888999998888 555554433211 11223345899999999999999999999988887653
Q ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHH
Q 002199 523 -----PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEA 597 (954)
Q Consensus 523 -----P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~ 597 (954)
|+....|.+++...+..+....|+..+.+++.+-- +.
T Consensus 1007 ~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~--------------------------------Ls------ 1048 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL--------------------------------LS------ 1048 (1236)
T ss_pred ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc--------------------------------cc------
Confidence 45677788888777777777777777776655310 00
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
--...|.-..+..+++.++..+++++.|+.+++.|+.....-.. .........+..++.++
T Consensus 1049 ----------~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g---------~~~l~~~~~~~~~a~l~ 1109 (1236)
T KOG1839|consen 1049 ----------SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG---------PKELETALSYHALARLF 1109 (1236)
T ss_pred ----------cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC---------ccchhhhhHHHHHHHHH
Confidence 00134666666778888888899999999999999886543221 11111222455566666
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 002199 678 FCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~ 695 (954)
...+++..|+...+..+.
T Consensus 1110 ~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1110 ESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhHHHHHHHHHHhhHHH
Confidence 667777666666665544
No 381
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.04 E-value=0.8 Score=45.68 Aligned_cols=88 Identities=17% Similarity=-0.004 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
+....+..........++.+++..++...--+.|..+ .+-..-|..++..|+|.+|+..++.+.+-.|..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~----------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP----------ELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch----------HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 4456778888888899999999999998888999987 888889999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHcCCHH
Q 002199 526 LKVYMRAAKCHLVLGEIE 543 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~e 543 (954)
+.+--.++.|+..+++..
T Consensus 78 p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 78 PYAKALLALCLYALGDPS 95 (160)
T ss_pred hHHHHHHHHHHHHcCChH
Confidence 988889999999888865
No 382
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.04 E-value=0.4 Score=43.31 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHH
Q 002199 468 EDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF--LKVYMRAAKCHLVLGEIE 543 (954)
Q Consensus 468 i~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~--~~a~~~LA~iy~~lG~~e 543 (954)
+..+++++..+|++. .+.+.+|..++..|++++|++.+-.++..++++ ..+.-.+-.++..+|.-+
T Consensus 8 ~~al~~~~a~~P~D~----------~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDL----------DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-H----------HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 344555555555554 555555555555555555555555555555443 334444444444444433
No 383
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.94 E-value=11 Score=40.61 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=116.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHH
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP-----NFLKVYMRAAK 534 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P-----~~~~a~~~LA~ 534 (954)
+..+.++|+..|++++++.+.... --..++-.+-.+++.+++|++-++.|.+.|..-. ++..--.+--.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKge------WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~Il 112 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGE------WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSIL 112 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccch------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445889999999999999987641 1135666777889999999999999988775311 11000000000
Q ss_pred HHH-HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 002199 535 CHL-VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK----VTEYINCSGKLLEQKTSEAASSALERINEAL 609 (954)
Q Consensus 535 iy~-~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~----~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL 609 (954)
-|. ...+.+.-.+.|+..| ..+..+.. ......++..++..++|....+.+..+.+.-
T Consensus 113 DyiStS~~m~LLQ~FYeTTL-----------------~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 113 DYISTSKNMDLLQEFYETTL-----------------DALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHH-----------------HHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 011 1111222222222222 22222222 1223346777777788876666666665554
Q ss_pred hcCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 610 SISS---------CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 610 ~~~P---------~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
+... .-.++|..--+.|-.+.+-..-..+|+++|.+...-+. ++-.-.+.-.=|..+++.
T Consensus 176 q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH-----------PlImGvIRECGGKMHlre 244 (440)
T KOG1464|consen 176 QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH-----------PLIMGVIRECGGKMHLRE 244 (440)
T ss_pred ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc-----------hHHHhHHHHcCCcccccc
Confidence 4332 12345555566777788878888899998877532211 110000111225678899
Q ss_pred CCHHHHHHHHHHHHhhC
Q 002199 681 GKLEVALDLLQKLEQVG 697 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~ 697 (954)
|++++|-.-|=+|.+-.
T Consensus 245 g~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 245 GEFEKAHTDFFEAFKNY 261 (440)
T ss_pred chHHHHHhHHHHHHhcc
Confidence 99999988888877643
No 384
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.93 E-value=0.08 Score=35.92 Aligned_cols=32 Identities=34% Similarity=0.366 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+|..+|.+++.+++++.|+..++++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45667777777777777777777777766664
No 385
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.88 E-value=0.09 Score=35.67 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
++..+|.++..++++++|+..+++++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555555555555555555555555543
No 386
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.12 Score=57.19 Aligned_cols=114 Identities=17% Similarity=0.052 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCccc--cc----CCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVP---LSETA--GC----CIKPLVLCYSNRAATRISLGRMREALEDCM 516 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P---~~~~~--~~----~~~~la~~~~~lA~~y~~lg~~eeAl~~~~ 516 (954)
...+.....|+..++.++|..|..-|.+++.... .+... .. .......++.+++.+-+.++.+..|+....
T Consensus 220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~ 299 (372)
T KOG0546|consen 220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN 299 (372)
T ss_pred hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence 3445566788999999999999999999987543 11100 00 111235678889999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 517 MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 517 kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
-+++.++...+++++++..+..+.++++|++.++.+....|.+
T Consensus 300 ~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 300 EALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred cccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 9999999999999999999999999999999999999999875
No 387
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.62 E-value=1.4 Score=45.13 Aligned_cols=101 Identities=16% Similarity=0.039 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHH----
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN--YTK---- 794 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~--~~~---- 794 (954)
-..+..+|..|.+.|+++.|++.|.++...... .......++++..+....+++.....++.++-.+-.. +..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 356778999999999999999999998876532 2456778888889999999999999999998765322 222
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.....|..++..++|..|.+.|-.++.-
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2334467778888999998887666544
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.55 E-value=0.46 Score=41.33 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
..+....+.|..+|.+.+..+|+..++++|+..++.+ ....++..+..+|...|+|++++.+..+-+++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999988754 34567778888999999999999887665554
No 389
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.50 E-value=18 Score=41.81 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHhhccCCchhhHHHHH---HHHHHHHHh----cC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 734 SGRYTEAVEHYTVALSTNIESRPFAAICFC---NRAAALQAL----GQ---IADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 734 ~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~---~lA~~y~~l----g~---~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
.|+.++|+..+-..-.+.| .-..+.. .+-.++... |. --+-+.+..+.+-.+..++.++..-+.-.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEP----DVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNA 786 (831)
T ss_pred cccHHHHHHHHHhhhccCc----cHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhH
Confidence 4678888887766655663 3222221 222222111 11 12344555666677888888888888888
Q ss_pred HHhcCHHHHHHHHHHHHHHh
Q 002199 804 EMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~ 823 (954)
+.+.+|.+|++++++.-+++
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 787 MHLRDYTQALQYWQRLEKVN 806 (831)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999988773
No 390
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.45 E-value=0.63 Score=52.43 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccC-------Cc-------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 726 SAGNEAFKSGRYTEAVEHYTVALSTNIE-------SR-------PFAAICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 726 ~lG~~~~~~g~~eeAi~~y~kAL~l~~~-------~~-------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
.-|..++++++|..|+--|..||++... .. .....+-..|..||+.+++.+.|+....+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 3456667778888888777777776321 00 122345567899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 792 YTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 792 ~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+..-++..|.++..+.+|.+|...+--+.=+
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877665544
No 391
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.44 E-value=0.18 Score=60.96 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL--GQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l--g~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
.....|+.+++.++|..|..-|..++.+-|..+...+.+..+.+.||+.+ ++|..++..+.-|+...|....+++.++
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 34457899999999999999999999999888889999999999999876 5999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
.+|..+++++-|++++.-...+.|.+.
T Consensus 135 ~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 135 RKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999877777766653
No 392
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.33 E-value=3.9 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQG 474 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kA 474 (954)
-|..+|+..+..=+++-|.+.|.+.
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4777777778778888888888765
No 393
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.21 E-value=28 Score=43.13 Aligned_cols=127 Identities=9% Similarity=-0.066 Sum_probs=69.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
+...+...+.+.|...+.+......-..... ......+|..+.......+|..++..+....
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~----------------~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-- 309 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQR----------------QELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-- 309 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHH----------------HHHHHHHHHHHHhccCCHHHHHHHHhccccc--
Confidence 3344456677888888876544333222110 1112223333333323566777776654331
Q ss_pred CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 754 SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 754 ~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
.....+..+..+.+..++++.+...+...-..........|.+|+++..+|+.++|...|+++..
T Consensus 310 ---~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 310 ---QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ---CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 12222333333444677777766666654332334567778888888888888888888887643
No 394
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.20 E-value=1.4 Score=42.41 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 722 LHHKSAGNEAFKSG---RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 722 ~~~~~lG~~~~~~g---~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
...++++.++.... +..+-|.+++..+.. ..+...-.+.+.||..++++++|+.|+.++...|+.+|++.++.-.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34556777776554 456678888888862 2334567788889999999999999999999999999999887655
Q ss_pred HHHHH
Q 002199 799 RAALH 803 (954)
Q Consensus 799 lA~ly 803 (954)
.-.+.
T Consensus 111 k~~ie 115 (149)
T KOG3364|consen 111 KETIE 115 (149)
T ss_pred HHHHH
Confidence 44443
No 395
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.14 E-value=3.4 Score=41.63 Aligned_cols=125 Identities=16% Similarity=0.048 Sum_probs=91.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhh
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFA 758 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~ 758 (954)
..+..++|+..|..+....-...+ +.+....|.+..+.|+...|+..|.++-.-.+...+..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~Yp------------------vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~r 131 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYP------------------VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGR 131 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcch------------------HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhh
Confidence 456677888888776554332222 33455678889999999999999999887765444444
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAM-ALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL-~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
-.+...-|.++...|-|++-....+..- .-+|--..+.-.||..-++.|++..|...|.++..
T Consensus 132 d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 132 DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5666677788888899988766555421 22444567778899999999999999999998875
No 396
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=10 Score=41.19 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEAL 609 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL 609 (954)
+.+|+-....+++++|+..|.++|...-. .+... ..++-...+++...|...|++....+.+...+.++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s--~dek~---------~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m 75 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVS--KDEKT---------LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM 75 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCC--hhhhh---------hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH
Confidence 56777788889999999999999875221 11111 11123345667777888888776655555555555
Q ss_pred hcC--CCCHHHHHHHHHHH-HHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 610 SIS--SCSEKLLEMKADAL-YMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVA 686 (954)
Q Consensus 610 ~~~--P~~~~~~~~lA~~~-~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeA 686 (954)
... |....+...+-+-+ .....++.-+..+...++.....- ..+.+...-..+..+|+..|.|.+|
T Consensus 76 ~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk-----------r~fLr~~Le~Kli~l~y~~~~Ysda 144 (421)
T COG5159 76 EDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK-----------RKFLRLELECKLIYLLYKTGKYSDA 144 (421)
T ss_pred HHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcccHHHH
Confidence 432 22222222221111 122345666666666665543221 1122222334567889999999999
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-CCch--hhHHHHH
Q 002199 687 LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI-ESRP--FAAICFC 763 (954)
Q Consensus 687 l~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-~~~p--~~a~~~~ 763 (954)
+......+.- +..+...+..+..+.....+|....+..++...+..|-.... ...| ..+.+-.
T Consensus 145 lalIn~ll~E--------------lKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL 210 (421)
T COG5159 145 LALINPLLHE--------------LKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL 210 (421)
T ss_pred HHHHHHHHHH--------------HHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence 9988776542 222222233344455566777777777777777766644321 1112 2233334
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 764 NRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
.-|..+..-.+|.-|..+|-.+++-
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhc
Confidence 4466666777888888888887753
No 397
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.91 E-value=26 Score=41.91 Aligned_cols=319 Identities=14% Similarity=0.030 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHcCCHH
Q 002199 465 TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA-AKCHLVLGEIE 543 (954)
Q Consensus 465 ~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L-A~iy~~lG~~e 543 (954)
+.+...|...|...|-.. ..|...|..-.++|..+.+++.|++++.--|.....|... +.+-...|+.+
T Consensus 62 ~~~r~~y~~fL~kyPl~~----------gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~ 131 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCY----------GYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPE 131 (577)
T ss_pred HHHHHHHHHHHhhCccHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHH
Confidence 667778888898889876 7889999999999999999999999999999777666654 33333456777
Q ss_pred HHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002199 544 NAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKA 623 (954)
Q Consensus 544 eAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA 623 (954)
.-...|++|+......-.... + +..++ .....++.+. .....|++.+++.-.....++..=
T Consensus 132 ~lr~~fe~A~~~vG~dF~S~~-l------------Wdkyi---e~en~qks~k---~v~~iyeRileiP~~~~~~~f~~f 192 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGLDFLSDP-L------------WDKYI---EFENGQKSWK---RVANIYERILEIPLHQLNRHFDRF 192 (577)
T ss_pred HHHHHHHHHHHhcccchhccH-H------------HHHHH---HHHhccccHH---HHHHHHHHHHhhhhhHhHHHHHHH
Confidence 777778888775432111000 0 00011 0112233333 333444444443322222222211
Q ss_pred HHHHH------ccCHHHHHHHHHHhchh-------hhhhh-----hhhhhccCcchhhHHHHHHHH-HHHHHHHHcCCHH
Q 002199 624 DALYM------LRKYEEAIQLCEHTLPV-------AEKNF-----ASVLADNGSVTYSLARLWRWR-LISKSYFCIGKLE 684 (954)
Q Consensus 624 ~~~~~------lg~~eeAi~~~ekaL~l-------~p~~~-----~~~~~~~~~~~~~~~~l~a~~-~Lg~~y~~lG~~e 684 (954)
.-++. +...+++++.-...... .|... ................+.... ..-.+|...-...
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~ 272 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEE 272 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 11111 11222222222111110 00000 000000000000110110111 1112333333444
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHH
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCN 764 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~ 764 (954)
+.+..++..+..--.+.... ....+..|......-...|+++...-.|++++--. ......|..
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl------------~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c----A~Y~efWik 336 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPL------------DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC----ALYDEFWIK 336 (577)
T ss_pred HHHHhhhhhccccccccCcc------------cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH----hhhHHHHHH
Confidence 44444544443210000000 11223345555666678899999999999998766 677889999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 765 RAAALQALGQIADAIADCSLAMALD-ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 765 lA~~y~~lg~~eeAi~~~ekAL~ld-P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.+.-....|+.+-|-..+..+.++. |..+..++.-+.+-...|++..|...|++..+-.|...+
T Consensus 337 y~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 337 YARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVE 401 (577)
T ss_pred HHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhh
Confidence 9999999999999998888888764 777888888899999999999999999999988776544
No 398
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.72 E-value=8.6 Score=45.84 Aligned_cols=78 Identities=9% Similarity=-0.039 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 002199 726 SAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-TKAVSRRAALHE 804 (954)
Q Consensus 726 ~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-~~al~~lA~ly~ 804 (954)
..+..+.....+.-|-+.|.+.-.+. .+-.++...++|.+|....++ .|.. +..|+..|+-+.
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD~k------------siVqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGDLK------------SLVQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhccHH------------HHhhheeecccchHhHhhhhh----CccccccccchHHHHhh
Confidence 34444455555555555554432211 122445556677777666554 2332 234555566666
Q ss_pred HhcCHHHHHHHHHHH
Q 002199 805 MIRDYTQAASDLQRL 819 (954)
Q Consensus 805 ~lg~~eeAi~~~ekA 819 (954)
...++++|.+.|.+|
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 666666666666444
No 399
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.55 E-value=25 Score=41.19 Aligned_cols=223 Identities=10% Similarity=0.025 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.++..+-.++-....+.-....|.+.|++.. +-.+++.+++||... ..++=...+++..+.+=++....+.++...+.
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK 144 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4444444455555556666678888888764 456899999999988 66777778888877665443322222222222
Q ss_pred HHHHHhHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKL-LEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~l-l~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
. +...+..++..+... +..++.. ..-+.+.+....-|++. +.-+....+.-.......
T Consensus 145 i-k~sk~a~~f~Ka~yrfI~~~q~~---~i~evWeKL~~~i~dD~----------------D~fl~l~~kiqt~lg~~~- 203 (711)
T COG1747 145 I-KKSKAAEFFGKALYRFIPRRQNA---AIKEVWEKLPELIGDDK----------------DFFLRLQKKIQTKLGEGR- 203 (711)
T ss_pred h-chhhHHHHHHHHHHHhcchhhhh---hHHHHHHHHHHhccccH----------------HHHHHHHHHHHHhhccch-
Confidence 1 111112222221111 1111111 01112222222222222 111111111111110000
Q ss_pred hhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 652 SVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA 731 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~ 731 (954)
.. -++..+-.-|....++.+|+..+.-.++++..+......+++.+..-++....+..|....++-
T Consensus 204 -------------~~-Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~ 269 (711)
T COG1747 204 -------------GS-VLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNIS 269 (711)
T ss_pred -------------HH-HHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchh
Confidence 00 0112223345567889999999999999888777766666776666666667777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhcc
Q 002199 732 FKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 732 ~~~g~~eeAi~~y~kAL~l~~ 752 (954)
..-.++.+|+.-|++.+..+.
T Consensus 270 ~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 270 QSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred hccccHHHHHHHHHHHheecc
Confidence 778899999999999887753
No 400
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.42 E-value=26 Score=40.64 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
....-|.-++.+|+|.+++-+-.=..++. | .+.+|..+|.|++...+|.+|..++..
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~ia----P-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIA----P-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC----C-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34445777899999999998877777787 5 788999999999999999999999875
No 401
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.34 E-value=0.45 Score=57.73 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL--GRMREALEDCMMAATVD 522 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l--g~~eeAl~~~~kALel~ 522 (954)
...+..+...|+.+++.++|..|.--|..++.+.|.+. ...+.+..+++.||+.+ ++|..++..+.-|+...
T Consensus 50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~------~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH------HVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ 123 (748)
T ss_pred HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc------hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence 34566778899999999999999999999999999653 34567888999998865 68999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|...++++.++.+|..+++++-|++...-.....|.+.
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999888888888763
No 402
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.12 E-value=0.19 Score=52.44 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=56.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
......++.+.|.+.|.+++++-|.+...|+++|....+.|+++.|...|++.|+++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345677899999999999999999999999999999999999999999999999999975
No 403
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.87 E-value=2.1 Score=42.77 Aligned_cols=85 Identities=12% Similarity=-0.125 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ 801 (954)
..+..........++.+++...+...--+. |..+.+-..-|.++...|+|.+|+..++.+.+-.|..+.+--.++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLR----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLR----PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 345556667778889999999988877777 7888888889999999999999999999998888999988888999
Q ss_pred HHHHhcCHH
Q 002199 802 LHEMIRDYT 810 (954)
Q Consensus 802 ly~~lg~~e 810 (954)
|+..+++..
T Consensus 87 CL~~~~D~~ 95 (160)
T PF09613_consen 87 CLYALGDPS 95 (160)
T ss_pred HHHHcCChH
Confidence 999888853
No 404
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=91.87 E-value=0.061 Score=62.87 Aligned_cols=44 Identities=34% Similarity=0.420 Sum_probs=33.6
Q ss_pred hccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHC
Q 002199 872 LGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES 915 (954)
Q Consensus 872 Lgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l 915 (954)
+.+..-.+...|||+|||++|..||||....+....-+-|++.+
T Consensus 394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekv 437 (453)
T KOG0431|consen 394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKV 437 (453)
T ss_pred CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHH
Confidence 34444568889999999999999999998877665555555555
No 405
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.84 E-value=1.3 Score=39.95 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCH
Q 002199 741 VEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY--TKAVSRRAALHEMIRDY 809 (954)
Q Consensus 741 i~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~--~~al~~lA~ly~~lg~~ 809 (954)
+..+++++..+ |.+..+.+.+|..+...|++++|++.+-.++..++++ ..+.-.+-.++..+|.-
T Consensus 8 ~~al~~~~a~~----P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 8 IAALEAALAAN----PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHS----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 45566666666 6666777777777777777777777777777776654 34444444444444443
No 406
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.45 E-value=0.21 Score=52.06 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY 792 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~ 792 (954)
....++.+.|.+.|.+|+.+. |.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~la----p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA----PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC----chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 444556666666666666665 5555666666666666666666666666666666554
No 407
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=6.5 Score=46.44 Aligned_cols=95 Identities=21% Similarity=0.114 Sum_probs=58.7
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh---ccCcc--hhhHHHH--HHHHHHHHHHHHc
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA---DNGSV--TYSLARL--WRWRLISKSYFCI 680 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~---~~~~~--~~~~~~l--~a~~~Lg~~y~~l 680 (954)
.|...|.+...++.+|.+...+|+.+-|..+.+++|=.-......... ..+.. ....-+. .+++..-..+...
T Consensus 276 lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~R 355 (665)
T KOG2422|consen 276 LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQR 355 (665)
T ss_pred eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhc
Confidence 344579999999999999999999999999888887332211100000 00000 1111111 1222223455678
Q ss_pred CCHHHHHHHHHHHHhhCCCCcc
Q 002199 681 GKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~ 702 (954)
|-+..|+++.+-++.++|....
T Consensus 356 GC~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred CChHHHHHHHHHHhhcCCcCCc
Confidence 8899999999999999988333
No 408
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.24 E-value=26 Score=38.25 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHh
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEHT 642 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~eka 642 (954)
.++.++..+|..|+..+++.+|..++-..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 57889999999999999999888776443
No 409
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=29 Score=38.73 Aligned_cols=253 Identities=16% Similarity=0.094 Sum_probs=152.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEAL 609 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL 609 (954)
+.+++......++++++..|.+++........+.... -..-...++++..+...|++.+...-+...+..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i---------~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~ 78 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARI---------KEKEQSILELGDLLAKEGDAEELRDLITSLRPFL 78 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHH---------HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 5667777788889999999999988411110111000 0112345677788888888887666666666655
Q ss_pred hcCCCC--HHHHHHHHHHHH-HccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 610 SISSCS--EKLLEMKADALY-MLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVA 686 (954)
Q Consensus 610 ~~~P~~--~~~~~~lA~~~~-~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeA 686 (954)
..-+.. ..+...+-+... .-+....-+.++..+++.....-. .+.+.-.-..+..+|+..++|.+|
T Consensus 79 ~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR-----------tFLRq~Learli~Ly~d~~~YteA 147 (411)
T KOG1463|consen 79 SSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR-----------TFLRQSLEARLIRLYNDTKRYTEA 147 (411)
T ss_pred HHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 543332 222222222222 234455667777777766543311 222222334577889999999999
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-C--CchhhHHHHH
Q 002199 687 LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI-E--SRPFAAICFC 763 (954)
Q Consensus 687 l~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-~--~~p~~a~~~~ 763 (954)
+......++- +..+......+..+......|+...+..+|...+..|-.... - .+...+.+-.
T Consensus 148 laL~~~L~rE--------------lKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 148 LALINDLLRE--------------LKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHHHHH--------------HHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 9988776542 222333333344555667888999999999988887754321 0 1123445555
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHHHHhcCHHHHHHHH
Q 002199 764 NRAAALQALGQIADAIADCSLAMALD---ENYTK---AVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ld---P~~~~---al~~lA~ly~~lg~~eeAi~~~ 816 (954)
.-|.++..-.+|.-|..+|-+|++-. .+... ++-.+-.+-.+++..++-...+
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66788888899999999999998642 12233 4444555666777777655544
No 410
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.03 E-value=0.39 Score=35.72 Aligned_cols=29 Identities=31% Similarity=0.217 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
.++.++|.+|..+|++++|+..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45566666666666666666666666554
No 411
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.89 E-value=3.2 Score=40.87 Aligned_cols=86 Identities=13% Similarity=-0.143 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
...+...........+.+++..++...--+.|+.. .+-..-|.+++..|+|.+|+..++...+-.+..+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~----------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~ 79 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK----------ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY 79 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc----------ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH
Confidence 34555666666778899999998888888889887 77788888999999999999999998888888888
Q ss_pred HHHHHHHHHHHcCCHH
Q 002199 528 VYMRAAKCHLVLGEIE 543 (954)
Q Consensus 528 a~~~LA~iy~~lG~~e 543 (954)
+.-.++.|+..+|+..
T Consensus 80 ~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 80 GKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHhcCChH
Confidence 8888889998888865
No 412
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.84 E-value=1.5 Score=42.29 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 449 EMWRLRGNQAYKNN---NLTEAEDFYTQGIN-SVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 449 e~l~~~G~~~~~~g---~y~eAi~~y~kAL~-~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+.++..+.... +..+-|.+++..++ ..|... -.+++.+|..++++++|+.++.+++..|+..|+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r---------Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR---------RECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc---------hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 44566666666544 45678888888886 445443 378888999999999999999999999999998
Q ss_pred cHHHHHH
Q 002199 525 FLKVYMR 531 (954)
Q Consensus 525 ~~~a~~~ 531 (954)
+..+...
T Consensus 104 n~Qa~~L 110 (149)
T KOG3364|consen 104 NRQALEL 110 (149)
T ss_pred cHHHHHH
Confidence 8776544
No 413
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=45 Score=40.17 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCC--chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIES--RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~--~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
-+.|.-+++..+|..++++|...+..-|.+ ....+....+++.||+.+.+.+.|.++++.|-+.+|.++-..+.+-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 355778899999999999999998875422 134478899999999999999999999999999999999888888899
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhh
Q 002199 803 HEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 803 y~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
....+.-++|+...........+
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHhcchHHHHHHHHHHHhhhcc
Confidence 99999999999999988877554
No 414
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.12 E-value=0.56 Score=34.86 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
++.++|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3445555555555555555555555554
No 415
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.80 E-value=5.1 Score=47.45 Aligned_cols=98 Identities=22% Similarity=0.135 Sum_probs=77.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHhCCCCHHHHHHH------
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADC-SLAMALDENYTKAVSRR------ 799 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~-ekAL~ldP~~~~al~~l------ 799 (954)
+...+...+....|+..+..++..+ |..+.++.++|.++...|....++..+ +.+....|.+...+..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVN----PENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL 148 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcC----cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence 4555667778888888888999888 778888889988888777665555544 44888889888776666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+.....+++..++...+++++.+.|+..+
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 88888888899999999999999887644
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.78 E-value=1.5 Score=39.87 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=41.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
....+.|+|..|++.+.+.+.......... .......++.++|.++...|++++|+..++.|+.+
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~-~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSS-SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccch-hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345788999999999999988765543100 00123455666666666666666666666666655
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.54 E-value=1.6 Score=39.56 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+++.+|.++...|++++|+..++.++++...
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
No 418
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.51 E-value=76 Score=40.93 Aligned_cols=322 Identities=12% Similarity=-0.013 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKN----N---NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA 518 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~----g---~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA 518 (954)
+--++.+..|...+.+ | .|.+|+..|++.- -.|..+ .-|...|.+|..+|+|++-+++|..|
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (932)
T PRK13184 510 EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAP----------LEYLGKALVYQRLGEYNEEIKSLLLA 578 (932)
T ss_pred cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCc----------hHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3345666667666543 2 5777887777643 345554 78999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhH--------------
Q 002199 519 ATVDPNFLKVYMRAAKCHLVL-----GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKV-------------- 579 (954)
Q Consensus 519 Lel~P~~~~a~~~LA~iy~~l-----G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~-------------- 579 (954)
++..|..+..-...-.+-+++ .+...|+...--++..-|.....+... .....+..-.+.
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (932)
T PRK13184 579 LKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEE-KFLEILYHKQQATLFCQLDKTPLQFR 657 (932)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHH-HHHHHHHhhccCCceeeccCchhhhh
Confidence 999998865544333333322 234456666677777777654332111 111111111110
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh-----hhhhhhhhh
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV-----AEKNFASVL 654 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l-----~p~~~~~~~ 654 (954)
...+.+-..+.. |..- --.+.++++....|. .++...-.+...+|.++-+.+.....-.. .|.+...
T Consensus 658 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 729 (932)
T PRK13184 658 SSKMELFLSFWS-GFTP---FLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVE-- 729 (932)
T ss_pred hhhHHHHHHHHh-cCch---hhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHh--
Confidence 000111111111 1111 123455666665544 55555556677888887655444332211 1111110
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
.....+..|..--.++.....++++.+.+... +|.... .++...+.-.+..
T Consensus 730 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~ 780 (932)
T PRK13184 730 -------QKVEELMFFLKGLEALSNKEDYEKAFKHLDNT---DPTLIL-------------------YAFDLFAIQALLD 780 (932)
T ss_pred -------hhHHHHHHHHHHHHHHHccccHHHHHhhhhhC---CHHHHH-------------------HHHHHHHHHHHHh
Confidence 00111112222233445566778877655442 211100 0111112222222
Q ss_pred CCH---HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCH
Q 002199 735 GRY---TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAM--ALDENYTKAVSRRAALHEMIRDY 809 (954)
Q Consensus 735 g~~---eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL--~ldP~~~~al~~lA~ly~~lg~~ 809 (954)
++. -.+++.+.+...-. .....+....-.+|+-..++.+|-+.+..-- .+..+...++...|.-+...++-
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (932)
T PRK13184 781 EEGESIIQLLQLIYDYVSEE----ERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDR 856 (932)
T ss_pred ccchHHHHHHHHHHhccCCh----hhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCch
Confidence 222 22333322221111 2234455556677888888888888774321 12245567777788888888888
Q ss_pred HHHHHHHHHHH
Q 002199 810 TQAASDLQRLV 820 (954)
Q Consensus 810 eeAi~~~ekAL 820 (954)
+-|...|....
T Consensus 857 ~~~~~~~~~~~ 867 (932)
T PRK13184 857 EAAKAHFSGCR 867 (932)
T ss_pred hHHHHHHhhcc
Confidence 88888887776
No 419
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.38 E-value=2.9 Score=45.23 Aligned_cols=72 Identities=17% Similarity=0.018 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~ 530 (954)
+..+=..+.+.++++.|..+-++.|.++|.++ .-+.-+|.+|.++|.+.-|+++++..++..|+.+.+-.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp----------~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDP----------YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCCh----------hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 33344455566666666666666666666665 55566666666666666666666666666666655444
Q ss_pred HH
Q 002199 531 RA 532 (954)
Q Consensus 531 ~L 532 (954)
..
T Consensus 254 ir 255 (269)
T COG2912 254 IR 255 (269)
T ss_pred HH
Confidence 33
No 420
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.29 E-value=48 Score=38.37 Aligned_cols=197 Identities=16% Similarity=0.045 Sum_probs=123.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
+.+++..-|..+++|+.....+...++-+.|+...++.+...|.- ...++..|-...+-+
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL--------------------~~~lse~yel~nd~e 350 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL--------------------TMFLSEYYELVNDEE 350 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch--------------------heeHHHHHhhcccHH
Confidence 456666677778888888888888899999999999988888752 224566666666666
Q ss_pred HHHHHHHHHHhh--------CCCCcchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002199 685 VALDLLQKLEQV--------GSISDRYG---SEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 685 eAl~~l~kal~l--------~p~~~~~~---~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
.-..+|+++.+. +.+..... .+....+ .+....+...++.-.-+.-.+..-.+.|...|.++-+.-.
T Consensus 351 ~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~El-l~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~- 428 (660)
T COG5107 351 AVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKEL-LLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI- 428 (660)
T ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHH-HHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-
Confidence 666666665431 10000000 0000000 0111112222333344444555667777788877755431
Q ss_pred CchhhHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 754 SRPFAAICFCNRA-AALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 754 ~~p~~a~~~~~lA-~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
....+|..-| .-|...|++.-|...|+..+...|+.+......-..++..++-+.|...|++++....+.
T Consensus 429 ---~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~ 499 (660)
T COG5107 429 ---VGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT 499 (660)
T ss_pred ---CCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh
Confidence 1222222222 335678999999999999999999988777777777888999999999999888775544
No 421
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.98 E-value=5.8 Score=46.71 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
.|..+|...+.+|+++-|.++|.++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5555666666666666666666554
No 422
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=18 Score=43.01 Aligned_cols=106 Identities=15% Similarity=-0.068 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhc
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMM-AATV 521 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~k-ALel 521 (954)
..|+..-+.. +...+...+....|+.....++..+|.+. .++.++|.+....|....++..+.. +...
T Consensus 63 ~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 63 VNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENC----------PAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccc----------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 3445444444 67777788899899999999999999997 8999999999888887777666555 8889
Q ss_pred CCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 522 DPNFLKVYMRA------AKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 522 ~P~~~~a~~~L------A~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.|.+......+ ++.+..+|+..++....+++..+.|.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 132 SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 99887766555 888889999999999999999998876
No 423
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=43 Score=36.56 Aligned_cols=220 Identities=10% Similarity=-0.036 Sum_probs=119.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C--CCcH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV---D--PNFL 526 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel---~--P~~~ 526 (954)
.++++...+.+++++|+..|.+.|...-... .......-....+++..|...|++..--+.....-+. - |...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~d--ek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~ 84 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKD--EKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKIT 84 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChh--hhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHH
Confidence 4678888999999999999999997622111 0011223467788999999999876433333222111 1 1111
Q ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 527 KVYMRAAKC-HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 527 ~a~~~LA~i-y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
++...|-.- -.....++.-+.....+++.. ...-....+..--..++..++..+.|.++..-|.-+
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA-------------~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWA-------------DREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111111100 011122333333333333321 111112222333455677788999999544333333
Q ss_pred HHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 606 NEALSI---SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 606 ~kaL~~---~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
..-++. .|.-..++..-..+|....+..++...+..|-.....-+- ++......-+.-|..+..-.+
T Consensus 152 l~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC----------Ppqlqa~lDL~sGIlhcdd~d 221 (421)
T COG5159 152 LHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC----------PPQLQAQLDLLSGILHCDDRD 221 (421)
T ss_pred HHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC----------CHHHHHHHHHhccceeecccc
Confidence 332322 2455678888889999999998888777666443321110 111111112233666677788
Q ss_pred HHHHHHHHHHHHhh
Q 002199 683 LEVALDLLQKLEQV 696 (954)
Q Consensus 683 ~eeAl~~l~kal~l 696 (954)
|..|..+|-++++-
T Consensus 222 yktA~SYF~Ea~Eg 235 (421)
T COG5159 222 YKTASSYFIEALEG 235 (421)
T ss_pred chhHHHHHHHHHhc
Confidence 99999999988874
No 424
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.32 E-value=18 Score=37.69 Aligned_cols=75 Identities=16% Similarity=0.066 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCHHH
Q 002199 736 RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN----YTKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~----~~~al~~lA~ly~~lg~~ee 811 (954)
.-++|...|-++-.. ..-..+...+.+|..|. ..+.++|+..+.++|++.+. +++.+..|+.+|..+++++.
T Consensus 121 ~d~~A~~~fL~~E~~---~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 121 GDQEALRRFLQLEGT---PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CcHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 445666666544322 22456788888887666 77899999999999998543 58999999999999999999
Q ss_pred HHH
Q 002199 812 AAS 814 (954)
Q Consensus 812 Ai~ 814 (954)
|.-
T Consensus 197 AYi 199 (203)
T PF11207_consen 197 AYI 199 (203)
T ss_pred hhh
Confidence 863
No 425
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.07 E-value=1.9 Score=46.59 Aligned_cols=71 Identities=18% Similarity=0.096 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
......++=.+|...++++.|....++.+.++|.++.-+.-+|.+|.++|.+.-|+.+++..++..|++..
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 44455666678889999999999999999999999999999999999999999999999999999776544
No 426
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.02 E-value=17 Score=43.19 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHhc------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----chhhhhhHHHHHH
Q 002199 506 GRMREALEDCMMAATV------------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS-----AAAVCLDRRITIE 568 (954)
Q Consensus 506 g~~eeAl~~~~kALel------------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l-----~P~~~~~~~~~~e 568 (954)
.-|++|...|.-|+.. .|-++..++.++.+...+|+.+-|....+++|-. .|..........-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4466777777777664 3667889999999999999999999998888752 1211100000000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HccCHHHHHHHHHHhchhh
Q 002199 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC-SEKLLEMKADALY-MLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 569 a~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~-~~~~~~~lA~~~~-~lg~~eeAi~~~ekaL~l~ 646 (954)
-......-.-....+.....+-..|-+. .|++.+.-.+.++|. +|.....+-.+|. +..+|.=-|+.++..-..+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~r---TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWR---TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 0000000000122223333344566666 899999999999998 7665555555544 3455555555554431111
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK---LEVALDLLQKLEQVGS 698 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~---~eeAl~~l~kal~l~p 698 (954)
. ..... ... .-..++..|..... -+.|+..+.+|+.+.|
T Consensus 409 ~--l~~~P------N~~-----yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 409 K--LSQLP------NFG-----YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred c--HhhcC------Cch-----HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 0 00000 000 11234556665555 5678899999998876
No 427
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.78 E-value=4.5 Score=44.31 Aligned_cols=80 Identities=20% Similarity=0.100 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
|..=+...+++++ .....++..++..+...++++.++..+++.+.++|-+..+|..+-.+|+..|+...|+..|
T Consensus 137 f~~WV~~~R~~l~------e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 137 FDEWVLEQRRALE------ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 4444444444444 3466788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 002199 817 QRLVSI 822 (954)
Q Consensus 817 ekAL~l 822 (954)
+++-++
T Consensus 211 ~~l~~~ 216 (280)
T COG3629 211 RQLKKT 216 (280)
T ss_pred HHHHHH
Confidence 999886
No 428
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.56 E-value=4.7 Score=35.24 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
....|.-++.+.+..+|+..++++++..++ .+....++-.+..+|...|+|.+++.+.-.=+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888899999988887644 3556667777778888888888888776554443
No 429
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.24 E-value=61 Score=37.13 Aligned_cols=144 Identities=12% Similarity=-0.032 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
+....++...++.+|..+-...+........... ..-.+..|+.+..+|-..++...-...+..-+...
T Consensus 131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtl-----------D~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTL-----------DLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhH-----------HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 3344455678899998888776543111111000 11122345556667777777665555555544432
Q ss_pred c--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 752 I--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMA--L--DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 752 ~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~--l--dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
. .+....+.+.+.+-..|+..+.|+.|-....++.- . +...+..++.+|.+..-+.+|..|.+++-+|+...|.
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 1 11234566777777888999999999888877641 1 1233566788899999999999999999999999886
Q ss_pred h
Q 002199 826 Q 826 (954)
Q Consensus 826 ~ 826 (954)
.
T Consensus 280 ~ 280 (493)
T KOG2581|consen 280 H 280 (493)
T ss_pred h
Confidence 3
No 430
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.21 E-value=46 Score=35.71 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhc----cCCchhhHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 002199 738 TEAVEHYTVALSTN----IESRPFAAICFCNRAAALQ-ALGQIADAIADCSLAMA 787 (954)
Q Consensus 738 eeAi~~y~kAL~l~----~~~~p~~a~~~~~lA~~y~-~lg~~eeAi~~~ekAL~ 787 (954)
+.|...|++|+.+. |..+|....+..|.+..|+ .+|+.++|+...++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45566666665542 2233555666666666554 47889999988888765
No 431
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.87 E-value=6.8 Score=40.67 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
....+|..|. ..+.++|+..|.++|++....+..++.++..||.+|+.+++++.|.-
T Consensus 143 lq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 143 LQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 3344555444 78999999999999999877767889999999999999999998853
No 432
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.36 E-value=39 Score=39.88 Aligned_cols=102 Identities=15% Similarity=-0.024 Sum_probs=54.8
Q ss_pred HcCCHHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 504 SLGRMREALEDCM--MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 504 ~lg~~eeAl~~~~--kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
..++++++++... +.+..-| ..-...++..+...|.++.|++.-+. |+
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D-----~~----------------------- 322 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD-----PD----------------------- 322 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------HH-----------------------
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC-----hH-----------------------
Confidence 3566777666554 2222222 23355667777788888888765432 21
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
.+-...++.|+++ .|++. ....+++..|..||...+..|+++-|..+|+++-+.
T Consensus 323 --~rFeLAl~lg~L~---~A~~~-----a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 323 --HRFELALQLGNLD---IALEI-----AKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp --HHHHHHHHCT-HH---HHHHH-----CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred --HHhHHHHhcCCHH---HHHHH-----HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 1222334556666 33321 122346778889999999999999998888886443
No 433
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.32 E-value=14 Score=36.62 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=62.5
Q ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 487 CIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 487 ~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
|.......+.....+-+...+..++...+...--+.|+.+.....-|.+++..|++.+|+..++.+.+-.+.
T Consensus 5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 445566777777778888999999999999888899999999999999999999999999999998876543
No 434
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.06 E-value=62 Score=36.00 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=71.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhH
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKV 579 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~ 579 (954)
....+..+..+-|+....||+++|..+.+|..||.- ..--..+|...|+++|+....
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~--------------------- 248 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET--------------------- 248 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH---------------------
Confidence 344455677778899999999999999999988753 223466788888888774221
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHhchhhh
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCS--EKLLEMKADALYMLRKYEEAIQLCEHTLPVAE 647 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~--~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p 647 (954)
.+.........+... +| ....+ .+ ..+...+|.|..++|+..+|+..++...+..|
T Consensus 249 --~yr~sqq~qh~~~~~---da------~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 249 --IYRQSQQCQHQSPQH---EA------QLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred --HHhhHHHHhhhccch---hh------hhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 222222222222111 11 11111 22 23445688999999999999999998877665
No 435
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=85.99 E-value=20 Score=41.91 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
+...|..|...|+...|+.+|..|+.+.
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3446888999999999999999998775
No 436
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.87 E-value=1.2 Score=33.30 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
++|..||.+-+..++|++|+.+|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999883
No 437
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.28 E-value=26 Score=38.51 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
..+.++..++..+...++++.++..+++.+.++ |.+-..|..+-.+|+..|+...|+..|++.-.+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELD----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345677889999999999999999999999999 888889999999999999999999999987664
No 438
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.80 E-value=81 Score=36.28 Aligned_cols=179 Identities=15% Similarity=0.073 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------ccCHHHHHHHHHHhchhhhhh
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM------------LRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~------------lg~~eeAi~~~ekaL~l~p~~ 649 (954)
...........+.|+. ++++.=.+.+..+|....++..+=.++.. ..-+++-+.+...+|+.+|+.
T Consensus 31 ~~s~i~~~r~~~~yd~--e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npks 108 (421)
T KOG0529|consen 31 LFSIIQKKREAKEYDE--EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKS 108 (421)
T ss_pred HHHHHHHHHhccccch--HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchh
Confidence 3344444445566664 67777778888888876666554433332 223556677888888999987
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGK--LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~--~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~l 727 (954)
+. +|+.+..++.+.+. +..-+.+.+++++.+|.+.....- +.. -.
T Consensus 109 Y~-----------------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~Y------------RRf----V~ 155 (421)
T KOG0529|consen 109 YG-----------------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHY------------RRF----VV 155 (421)
T ss_pred HH-----------------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHH------------HHH----HH
Confidence 54 78888888886664 688899999999999988774410 000 01
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh------c------CHHHHHHHHHHHHHhCCCCHHH
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL------G------QIADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l------g------~~eeAi~~~ekAL~ldP~~~~a 795 (954)
+.+-.......+=+++.+++|.-+ +.+..+|.++..++..+ | -...-+.+-..|+-.+|++..+
T Consensus 156 ~~~~~~~~~~~~El~ftt~~I~~n----fSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~ 231 (421)
T KOG0529|consen 156 EQAERSRNLEKEELEFTTKLINDN----FSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSC 231 (421)
T ss_pred HHHhcccccchhHHHHHHHHHhcc----chhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccce
Confidence 112222234666788888888877 78888998888777632 3 1334455666777789998887
Q ss_pred HHHH
Q 002199 796 VSRR 799 (954)
Q Consensus 796 l~~l 799 (954)
|+..
T Consensus 232 WfY~ 235 (421)
T KOG0529|consen 232 WFYH 235 (421)
T ss_pred eeeh
Confidence 7663
No 439
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.69 E-value=16 Score=40.64 Aligned_cols=187 Identities=14% Similarity=0.078 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
+.++|..-.-.+.+-|..++++-.++.+++..-+... ..+.+... + ......-.+|
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~-v-----lL~dQDr~lW--------- 267 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEP-V-----LLEDQDRSLW--------- 267 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCe-e-----eccccchhhh---------
Confidence 3477777777777888888888887777665433221 11111100 0 0001111122
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
..+-.++++..+.+++.....-+..+.. +..-.......-..-+|..-..+|+....+.|
T Consensus 268 -~r~lI~eg~all~rA~~~~~pGPYqlqA--------------AIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap----- 327 (415)
T COG4941 268 -DRALIDEGLALLDRALASRRPGPYQLQA--------------AIAALHARARRAEDTDWPAIDALYDALEQAAP----- 327 (415)
T ss_pred -hHHHHHHHHHHHHHHHHcCCCChHHHHH--------------HHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-----
Confidence 2333567788888887765432221111 11111111112344578777778877777763
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMAL--DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
++.+-.|++.+..+..=...++...+...+- -..+...+-.+|.++.++|+.++|...|++++.+.++..+
T Consensus 328 SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 328 SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 4567778888887777777788777766543 2356677788999999999999999999999999665544
No 440
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.38 E-value=1.4e+02 Score=38.76 Aligned_cols=132 Identities=20% Similarity=0.129 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL-LHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~-~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
.-|..|...|+.++|+..|+.+.. +...+.....+......+ .....+...+..++++-+|-+.....+.-
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~d--------Wr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGD--------WREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhcc--------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 346677788888888888877643 111111111111111111 11234566677788888887777666543
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD----ENYTKAVSRRAALHEMIRD-YTQAASDLQRLVSI 822 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld----P~~~~al~~lA~ly~~lg~-~eeAi~~~ekAL~l 822 (954)
+..+.+ .|.+...|++|+..+..+-+.+ --.+.+....+.+..-+.+ .++=..+.++++.+
T Consensus 1029 -----~~~av~------ll~ka~~~~eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~v 1094 (1265)
T KOG1920|consen 1029 -----PEEAVA------LLCKAKEWEEALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVV 1094 (1265)
T ss_pred -----HHHHHH------HHhhHhHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 3444567888887776654211 0012333444555555555 33333444455444
No 441
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.87 E-value=1.4 Score=32.95 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
+|..||.+-+..++|++|+..|+++|++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554
No 442
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.71 E-value=34 Score=39.96 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~ 481 (954)
..+.+|+.+|-.++|+.|...|+.+.+-.-.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D 241 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND 241 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999888754443
No 443
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.23 E-value=0.59 Score=47.73 Aligned_cols=50 Identities=36% Similarity=0.448 Sum_probs=42.3
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES 915 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l 915 (954)
.+.|++|++....+..+|+++|+++...+|||+....+...+|.+..+..
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~ 162 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEK 162 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHH
Confidence 57799999999999999999999999999999988877666665554433
No 444
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.29 E-value=1.1e+02 Score=36.08 Aligned_cols=170 Identities=12% Similarity=0.031 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
+++.++..|...+. + +-...+++.++.+=++...-..|+..|.. .+...++.+|.+++..--..-+
T Consensus 101 al~el~q~y~en~n-~---~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q--------- 166 (711)
T COG1747 101 ALLELLQCYKENGN-E---QLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQ--------- 166 (711)
T ss_pred HHHHHHHHHHhcCc-h---hhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhh---------
Confidence 45556666665532 2 35556667777776677666777777666 7777788888777643211000
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEA 740 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeA 740 (954)
.... .+.+++...+.+++......++.....-.........+...-.-|-...+|.+|
T Consensus 167 ~~~i----------------------~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ea 224 (711)
T COG1747 167 NAAI----------------------KEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEA 224 (711)
T ss_pred hhhH----------------------HHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHH
Confidence 0011 122333333333332222111111111111111111222233456677899999
Q ss_pred HHHHHHHHhhccCCchhhHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHhCC
Q 002199 741 VEHYTVALSTNIESRPFAAICFCNRAAALQA--------------------LGQIADAIADCSLAMALDE 790 (954)
Q Consensus 741 i~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~--------------------lg~~eeAi~~~ekAL~ldP 790 (954)
|+.+...++.+ ..+..+.-++-.-+.. -.++.+|+..|++.+-++.
T Consensus 225 i~Ilk~il~~d----~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 225 IRILKHILEHD----EKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred HHHHHHHhhhc----chhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 99999998887 3333333333332222 3478888889988886654
No 445
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.90 E-value=17 Score=42.42 Aligned_cols=88 Identities=17% Similarity=0.046 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
..+..|+.++...+.++.+|........+.+.+.+--.+|.+++...|++.. .|...|.-.+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d-----------------LWI~aA~wefe 151 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD-----------------LWIYAAKWEFE 151 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch-----------------hHHhhhhhHHh
Confidence 5566677777777777777777666666666677777777777777777654 34444444444
Q ss_pred cCC-HHHHHHHHHHHHhhCCCCcchh
Q 002199 680 IGK-LEVALDLLQKLEQVGSISDRYG 704 (954)
Q Consensus 680 lG~-~eeAl~~l~kal~l~p~~~~~~ 704 (954)
.+. .+.|...+.++|+.+|+.+...
T Consensus 152 ~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 152 INLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred hccchHHHHHHHHHHhhcCCCChHHH
Confidence 444 7777777777777777776654
No 446
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.85 E-value=6.8 Score=45.08 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=85.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHH
Q 002199 503 ISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEY 582 (954)
Q Consensus 503 ~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~ 582 (954)
+..|+...|-+.+..+|...|..+......+.+...+|.|+.|.+.+.-+-.+-..- . ...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-----------------~--~~~ 360 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-----------------D--STL 360 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-----------------c--hHH
Confidence 346888888888999999999999988999999999999999998876543321100 0 001
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
--+.+.+...++++ .|+....-.+...-.++++....|-....+|-++++..++++++.++|..
T Consensus 361 ~~~~r~~~~l~r~~---~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 361 RCRLRSLHGLARWR---EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHhhhchhhHH---HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 11122334445555 55555555555555566666666666777888888888888888887753
No 447
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.36 E-value=6.1 Score=43.00 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
..+...+..|...|.+.+|+.++++++.++|-+...+..+-.++..+|+--.|+..|++.-+..
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 3445567888999999999999999999999999999999999999999999999999887764
No 448
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=80.78 E-value=51 Score=36.80 Aligned_cols=212 Identities=15% Similarity=0.083 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH----HhCCCCcccccCCchH----HHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 445 QETCEMWRLRGNQAYKNN-NLTEAEDFYTQGI----NSVPLSETAGCCIKPL----VLCYSNRAATRISLGRMREALEDC 515 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g-~y~eAi~~y~kAL----~~~P~~~~~~~~~~~l----a~~~~~lA~~y~~lg~~eeAl~~~ 515 (954)
.+.-+.+..++..+..+. .+..+..+.+-++ ...|.... +....+ +.....+-..+ ..+++.+.++.+
T Consensus 46 R~~~~~~~~lA~~l~eq~~~~~~~yrL~R~a~W~~I~~lP~~~~--~g~T~L~~p~ad~~~~~~~~~-~~~~~~~Ll~~~ 122 (301)
T TIGR03362 46 RALRDTLLQVADLLLEQDPDDPRGYRLRRTALWGTITALPMSNA--DGRTRLAPPPADRVADYQELL-AQADWAALLQRV 122 (301)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhccCCCCCC--CCCccCCCCCHHHHHHHHHHH-hCCCHHHHHHHH
Confidence 334445556666666664 3456666665553 22343210 011111 22222222222 667889999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 516 MMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 516 ~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
++.+...|-....++..+.++.++| ++.+.......+..- + ..+-.+....+..|..
T Consensus 123 E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~f----------------L------~RlP~L~~L~F~DGtP 179 (301)
T TIGR03362 123 EQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAF----------------L------ERLPGLLELKFSDGTP 179 (301)
T ss_pred HHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH----------------H------HhCcChhhcccCCCCC
Confidence 9999999999999999999999999 566655554443320 0 0000111111122211
Q ss_pred HHHHHHHHHHHHHHhc-----------CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchh
Q 002199 596 EAASSALERINEALSI-----------SS--CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~~-----------~P--~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~ 662 (954)
=.-.+....+...... .+ .+..-...-+..+...+..++|+..++..+...+..
T Consensus 180 Fad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~------------- 246 (301)
T TIGR03362 180 FADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREP------------- 246 (301)
T ss_pred CCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCCh-------------
Confidence 0000122222111000 01 112223344778888999999999999865543322
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 663 SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 663 ~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l 696 (954)
-.+++..+.++.++...|.++-|+.+|+.+.+.
T Consensus 247 -R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 247 -RERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 233445677899999999999999999988653
No 449
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.34 E-value=6.1 Score=42.97 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002199 467 AEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV 538 (954)
Q Consensus 467 Ai~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~ 538 (954)
|+.+|.+|+.+.|.+. ..|..+|.++...|+.-.|+-+|-+++....-++.+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G----------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG----------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS----------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC----------CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999999998 8999999999999999999999999997765567788888777777
No 450
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.24 E-value=5.5 Score=29.38 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDF--YTQGINSVPLS 481 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~--y~kAL~~~P~~ 481 (954)
+.|+.+|-.++.+|+|++|+.. |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5688899999999999999999 54777777653
No 451
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.95 E-value=23 Score=42.24 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=52.2
Q ss_pred HHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002199 468 EDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQH 547 (954)
Q Consensus 468 i~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~ 547 (954)
..+.++||++.++.. .+-.+.+++|+++.|.+...++ +...-|-.||.+.+..+++..|.+
T Consensus 627 ~g~~e~AL~~s~D~d--------------~rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~E 687 (794)
T KOG0276|consen 627 QGMKEQALELSTDPD--------------QRFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASE 687 (794)
T ss_pred ccchHhhhhcCCChh--------------hhhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHH
Confidence 345566777776653 3445667889999888765544 556678899999999999999999
Q ss_pred HHHHHHhh
Q 002199 548 YYHKLLNS 555 (954)
Q Consensus 548 ~yekaL~l 555 (954)
+|.++..+
T Consensus 688 C~~~a~d~ 695 (794)
T KOG0276|consen 688 CFLRARDL 695 (794)
T ss_pred HHHhhcch
Confidence 99998664
No 452
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.47 E-value=2.7 Score=28.33 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYH 550 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~ye 550 (954)
+++.+|.++..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665553
No 453
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.26 E-value=2.7 Score=28.35 Aligned_cols=23 Identities=22% Similarity=-0.073 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQ 817 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~e 817 (954)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555555555666555555543
No 454
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.72 E-value=28 Score=39.81 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD---- 522 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~---- 522 (954)
.-.++..+|..|+.-|+++.|+.+|.++-..+... +..+..+.++-.+-+.+|+|..-+.+..+|...-
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 45678899999999999999999999976666543 3457888888899999999988888887776641
Q ss_pred ---C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 523 ---P-NFLKVYMRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 523 ---P-~~~~a~~~LA~iy~~lG~~eeAl~~yeka 552 (954)
+ -.+++....|.+.+.+++|..|..+|-.+
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 11345556677778888999999988654
No 455
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.50 E-value=51 Score=38.05 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhc
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR--AATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l--A~~y~~lg~~eeAl~~~~kALel 521 (954)
.+....++..+|..++|..|...|..++...|... . ...+..+ |.-+...-++.+|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~-------~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGRE-------E-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh-------h-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556778899999999999999999998644432 0 2344444 45556788899999999988765
No 456
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=74.96 E-value=66 Score=34.80 Aligned_cols=46 Identities=22% Similarity=0.089 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 511 ALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 511 Al~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
|+.+|.+|+.+.|.....|..+|.++...|+.-+|+-+|-+++-..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 7889999999999999999999999999999999999999998654
No 457
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.71 E-value=18 Score=31.44 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGIN 476 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~ 476 (954)
+.+..+..+|..+-+.|+|.+|+.+|+++|+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4556677777777788888888877776654
No 458
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.36 E-value=2.1e+02 Score=35.89 Aligned_cols=235 Identities=8% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhH
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKV 579 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~ 579 (954)
..+.+..-|.-|+...+.--.-.-.....+...|.-++..|++++|...|-+++. .
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~------------------------~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG------------------------F 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc------------------------c
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-------------------CHHHHHHHHH
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLR-------------------KYEEAIQLCE 640 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg-------------------~~eeAi~~~e 640 (954)
..--.....++...... +-..+++...+..-.+..-...|-.||.+++ +.+.|++++.
T Consensus 398 le~s~Vi~kfLdaq~Ik---nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr 474 (933)
T KOG2114|consen 398 LEPSEVIKKFLDAQRIK---NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILR 474 (933)
T ss_pred CChHHHHHHhcCHHHHH---HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHH
Q ss_pred HhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHH
Q 002199 641 HTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRA 720 (954)
Q Consensus 641 kaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~ 720 (954)
++-=++....-+..... .-..+-.++..+++|++|+.++..+ .....
T Consensus 475 ~snyl~~a~~LA~k~~~-----------he~vl~ille~~~ny~eAl~yi~sl----------------------p~~e~ 521 (933)
T KOG2114|consen 475 KSNYLDEAELLATKFKK-----------HEWVLDILLEDLHNYEEALRYISSL----------------------PISEL 521 (933)
T ss_pred HhChHHHHHHHHHHhcc-----------CHHHHHHHHHHhcCHHHHHHHHhcC----------------------CHHHH
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTN-IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTK 794 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~-~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~ 794 (954)
+......|..++...--+---...+..-... +............+-.++.-.+++..-..+++...+..|+.++
T Consensus 522 l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 522 LRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
No 459
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=74.19 E-value=63 Score=37.67 Aligned_cols=124 Identities=14% Similarity=0.061 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcC----CHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE--AFKSG----RYT 738 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~--~~~~g----~~e 738 (954)
..+...+..|.-++..|++.+|+..|+.+|...|-..-........+..+....++ | .+|.. +.+.. ..+
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrE---Y-ilgl~iEl~Rr~l~~~~~~ 277 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICRE---Y-ILGLSIELERRELPKDPVE 277 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHH---H-HHHHHHHHHHCTS-TTTHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHhccccchh
Confidence 33334556788889999999999999999886443322111112222222211111 1 11211 11211 122
Q ss_pred HHHHHHHHHHhh-ccCCchhhHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHhCCCC
Q 002199 739 EAVEHYTVALST-NIESRPFAAICFCNRA-AALQALGQIADAIADCSLAMALDENY 792 (954)
Q Consensus 739 eAi~~y~kAL~l-~~~~~p~~a~~~~~lA-~~y~~lg~~eeAi~~~ekAL~ldP~~ 792 (954)
+....++-|.-. .....|.+..+-+..| ...++.++|..|..+.++.|++.|..
T Consensus 278 ~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 278 DQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 222222222211 1111233333333333 34457788999999999999888764
No 460
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=73.96 E-value=2.5e+02 Score=35.33 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHhcCCC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRI--S-LGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~--~-lg~~eeAl~~~~kALel~P~ 524 (954)
...+..+-..++..|++++-...=.++.++.|-.+ .+|.....-.. . .+.-.++...|+++|.-. .
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~----------~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~ 181 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP----------HLWLEWLKDELSMTQSEERKEVEELFEKALGDY-N 181 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-c
Confidence 34445556677888998887777777777777776 55555544333 2 256678888899998643 3
Q ss_pred cHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHhhc
Q 002199 525 FLKVYMRAA-------KCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 525 ~~~a~~~LA-------~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
.+..|...+ ..+...++++.-...|.++|..-
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 333443333 33355577888888888888743
No 461
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.85 E-value=1.2e+02 Score=38.72 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=31.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 502 RISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 502 y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
++++.++..-++..+..|...+ -|..|+.+|...|.+++|++.+.....-
T Consensus 484 llrlen~~c~vee~e~~L~k~~----~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 484 LLRLENNHCDVEEIETVLKKSK----KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred hhhccCCCcchHHHHHHHHhcc----cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3344443344555555555443 3566777788888888888888777663
No 462
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=73.75 E-value=8.6 Score=28.38 Aligned_cols=21 Identities=14% Similarity=-0.129 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~ 815 (954)
.++.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.41 E-value=22 Score=38.42 Aligned_cols=63 Identities=24% Similarity=0.210 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPN------FLKVYMRAAKCHLVLGEIENAQHYYHKLL 553 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~------~~~a~~~LA~iy~~lG~~eeAl~~yekaL 553 (954)
...+...+|..|+..|+|++|+..|+.++..... ...++..+..|+..+|+.+..+.+.-+++
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3467778899999999999999999999765432 24567778888999999888777665543
No 464
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.72 E-value=2.1e+02 Score=35.59 Aligned_cols=354 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHH
Q 002199 500 ATRISLGRMREALEDCMMAATVDPN--FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQ 577 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~--~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~ 577 (954)
..+++.+.|++|+...+.....-|. -.+....+-.-|+..|+|++|....-+.+. ++.............+....
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---n~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---NNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---chHHHHHHHHHHhccccccc
Q ss_pred hHHHHHHHHHHHHHhcChHHHH--------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 002199 578 KVTEYINCSGKLLEQKTSEAAS--------------------------SALERINEALSISSCSEKLLEMKADALYMLRK 631 (954)
Q Consensus 578 ~~~~~l~~a~~ll~~g~~~~a~--------------------------eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~ 631 (954)
.+..++-.+...+...-|+.+. .-+.....-++.+.....+...||.+|+..++
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~ 520 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNK 520 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccC
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 002199 632 YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESS 711 (954)
Q Consensus 632 ~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~ 711 (954)
|..|+..|-.+.+..--+........ -...-..+.+.+-+.+.|...+-.-....| -
T Consensus 521 Y~~Al~~ylklk~~~vf~lI~k~nL~-----------d~i~~~Iv~Lmll~skka~~lLldn~d~ip------------~ 577 (846)
T KOG2066|consen 521 YEKALPIYLKLQDKDVFDLIKKHNLF-----------DQIKDQIVLLMLLDSKKAIDLLLDNRDSIS------------P 577 (846)
T ss_pred hHHHHHHHHhccChHHHHHHHHHhhH-----------HHHHHHHHHHHccchhhHHHHHhhccccCC------------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 712 ~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
..+.........+...-..++-..+...--++-.+.+.+.-+.+.....-+...-..| +.++|++.|. -...-++
T Consensus 578 a~Vveql~~~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y----~lekA~eiC~-q~~~~~E 652 (846)
T KOG2066|consen 578 SEVVEQLEDNPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNY----NLEKALEICS-QKNFYEE 652 (846)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCC----CHHHHHHHHH-hhCcHHH
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhhccCCCcchhhh
Q 002199 792 YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLI 871 (954)
Q Consensus 792 ~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYki 871 (954)
....|-.+|..+..+.-.-.-+...++|++...++.+.-.+. ..+......=.-+..........|+-.+
T Consensus 653 ~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe----------~LI~~~ldkPe~~~~ll~i~~~~dpl~i 722 (846)
T KOG2066|consen 653 LVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWE----------DLINYSLDKPEFIKALLNIGEHEDPLLI 722 (846)
T ss_pred HHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHH----------HHHHHhhcCcHHHHHHHHhhhcccHHHH
Q ss_pred hc-cccCCCHHHHHHHHHHHHHhh
Q 002199 872 LG-VKASDTAADIKKAYRKAALKH 894 (954)
Q Consensus 872 Lg-v~~~a~~~eIkkAYrklAl~~ 894 (954)
++ ++.+..-.-++++..|+...|
T Consensus 723 i~kip~g~~IPnLrdsl~Kil~dy 746 (846)
T KOG2066|consen 723 IRKIPDGLEIPNLRDSLVKILQDY 746 (846)
T ss_pred HhcCCCCCCCccHHHHHHHHHHhh
No 465
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.87 E-value=14 Score=40.27 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
..+...+..|...|.+.+|++.+++++.++|-+...+..+-.+|..+|+--.|+..|++.-+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45566788899999999999999999999999999999999999999999999999988644
No 466
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.82 E-value=1.5e+02 Score=31.87 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 002199 494 CYSNRAATRISLGRMREALEDCMMAATVDPNF-LKVYMRAAKCHL-VLGEIENAQHYYHKL 552 (954)
Q Consensus 494 ~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-~~a~~~LA~iy~-~lG~~eeAl~~yeka 552 (954)
-+..+|.+..+.++|++.+...++++.++|.. ..=...+..+|- ..|....+...+...
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 35678888888999999999999999887754 333444444442 234444444444443
No 467
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.65 E-value=17 Score=39.20 Aligned_cols=70 Identities=9% Similarity=0.001 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
-......++|..|+..|+|++|+.+|+.+....-... |...+..++..+..|+..+|+.+..+..+-+.+
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg----W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG----WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445667999999999999999999999977665543 566678899999999999999999888776554
No 468
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.05 E-value=1.6e+02 Score=32.03 Aligned_cols=158 Identities=9% Similarity=-0.069 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMR-EALEDCMMAATV 521 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~e-eAl~~~~kALel 521 (954)
...+..+.++.-+..+++.|++..|.++-.-.|+....... ..-.....++..++.....-+ +-....++|+.-
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~-----~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~W 79 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSED-----PVDEESIARLIELISLFPPEEPERKKFIKAAIKW 79 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 34567788888889999999999998777666654211110 000133456666666555432 233334444443
Q ss_pred C------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhcC
Q 002199 522 D------PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCS-GKLLEQKT 594 (954)
Q Consensus 522 ~------P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a-~~ll~~g~ 594 (954)
. -.++..|..+|..|.+.+++.+|..+|-..- +|..... ..................++.++ ..++..++
T Consensus 80 S~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~--~~~~~~~-~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n 156 (260)
T PF04190_consen 80 SKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT--DPSAFAY-VMLLEEWSTKGYPSEADLFIARAVLQYLCLGN 156 (260)
T ss_dssp HHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHH-HHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB
T ss_pred HccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC--ChhHHHH-HHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Confidence 2 2568899999999999999999999985432 2211000 00011001111111233444444 34667788
Q ss_pred hHHHHHHHHHHHHH
Q 002199 595 SEAASSALERINEA 608 (954)
Q Consensus 595 ~~~a~eAL~~l~ka 608 (954)
...|..++..|.+.
T Consensus 157 ~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 157 LRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877766
No 469
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.84 E-value=2e+02 Score=32.48 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCCcccccCCchHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHh---c--------------------
Q 002199 467 AEDFYTQGINSVPLSETAGCCIKPLVLCY--SNRAATRISLGRMREALEDCMMAAT---V-------------------- 521 (954)
Q Consensus 467 Ai~~y~kAL~~~P~~~~~~~~~~~la~~~--~~lA~~y~~lg~~eeAl~~~~kALe---l-------------------- 521 (954)
+-..|+++++..|+.. ..+| .+.|.+++..++|.+....+..+-+ .
T Consensus 40 ~~~~y~Q~~q~~kk~~---------~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~v 110 (449)
T COG3014 40 PKKAYEQSKQFTKKKK---------NALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMI 110 (449)
T ss_pred chhHHHHHHHhhhhhh---------HHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhh
Confidence 4556777777777764 1333 3457888888888776655544321 1
Q ss_pred -------CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 522 -------DPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 522 -------~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
+|.. .-.++.+|.-|+...+++.|+-.|.+++..
T Consensus 111 NDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 111 NDNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred ccchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 1111 335667788899999999999999998774
No 470
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.44 E-value=11 Score=29.18 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 797 SRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 797 ~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
+.+|.+|+.+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888874
No 471
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.20 E-value=44 Score=40.05 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=63.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 002199 675 KSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES 754 (954)
Q Consensus 675 ~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~ 754 (954)
.+.+++|+++.|..+..++-. ...|..+|.+.+..+++..|.++|.+|..+.
T Consensus 645 elal~lgrl~iA~~la~e~~s-------------------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--- 696 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEANS-------------------------EVKWRQLGDAALSAGELPLASECFLRARDLG--- 696 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhcc-------------------------hHHHHHHHHHHhhcccchhHHHHHHhhcchh---
Confidence 345678888888777666522 2467789999999999999999999986543
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.|-.++...|+-+--...-..+-+....+. | =.+|...|+++++++.+...-++
T Consensus 697 ---------~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-A----F~~~~l~g~~~~C~~lLi~t~r~ 750 (794)
T KOG0276|consen 697 ---------SLLLLYTSSGNAEGLAVLASLAKKQGKNNL-A----FLAYFLSGDYEECLELLISTQRL 750 (794)
T ss_pred ---------hhhhhhhhcCChhHHHHHHHHHHhhcccch-H----HHHHHHcCCHHHHHHHHHhcCcC
Confidence 111233334443322222222222111111 1 14677788888888776655333
No 472
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.59 E-value=3.1e+02 Score=33.92 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=15.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
..-++..|+|++|++.+++. .+.|.+
T Consensus 512 ff~~~~~g~~~~AL~~i~~L-~liP~~ 537 (613)
T PF04097_consen 512 FFDLYHAGQYEQALDIIEKL-DLIPLD 537 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHHT-T-S-S-
T ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCC
Confidence 34457788999999888764 466643
No 473
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.34 E-value=3.2e+02 Score=34.00 Aligned_cols=43 Identities=14% Similarity=-0.007 Sum_probs=33.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 766 AAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 766 A~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
-.+....|+.+||.+++-++- ... .+..+|...|++.+|++.-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVG----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhcccHHHHhhhhhccC----ChH----HHHHHHHHhccHHHHHHHH
Confidence 466788999999999987642 222 6788899999999998764
No 474
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=66.86 E-value=1.7e+02 Score=38.09 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yeka 552 (954)
++.-.+-..+++|+.|+..+.++
T Consensus 884 ~rkF~ID~~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 884 LRKFKIDDYLKRYEDALSHLSEC 906 (1265)
T ss_pred hhheeHHHHHHHHHHHHHHHHHc
Confidence 34445556677888887777654
No 475
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.71 E-value=1.3e+02 Score=31.96 Aligned_cols=62 Identities=10% Similarity=-0.042 Sum_probs=56.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 498 RAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 498 lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
....+++.+...+||...+.-++.+|.+......+-++|.-.|+|++|+.-++-+-++.|..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34467788999999999999999999999999999999999999999999999999998865
No 476
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.48 E-value=17 Score=42.04 Aligned_cols=65 Identities=17% Similarity=0.054 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNI-----ESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-----~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
.+..+..++.-.|+|..|++.++-. .++. ...+-...+++.+|-+|+.+++|.+|++.|..+|-.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888889999998888653 2221 112456667888899999999999999988887643
No 477
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.37 E-value=1.1e+02 Score=35.26 Aligned_cols=137 Identities=17% Similarity=0.089 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
...+..++..++|..|...+..+....|.... . ........|..+...-++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~--------------~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREE--Y--------------QRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--H--------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567788999999999999998874222211 0 1112223466677889999999999998765
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN--YTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~--~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
... -......+..+..+...+..+..+........ ..+. ...-++.-|.--...|+|+.|+..+-+++++.-.
T Consensus 199 ~~~-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 199 DKA-LNQEREGLKELVEVLKALESILSALEDKKQRQ-KKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred hhh-hHhHHHHHHHHHHHHHHHHhhccchhhhhccc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 310 00111222222222222222221111111100 0000 1112222333335679999999999999999643
No 478
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.84 E-value=2.3e+02 Score=31.26 Aligned_cols=105 Identities=13% Similarity=0.019 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 668 WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 668 ~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
.+|.++|..|.+.++.+.+.+.+.+.+.-+ ......+........+|.+|-.+.-.++-++..+..
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a--------------~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~ 181 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDA--------------MSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDI 181 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--------------HhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 378899999999999999999998886532 112222333344455777777766677777777777
Q ss_pred HhhccCC-chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 748 LSTNIES-RPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 748 L~l~~~~-~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
++..-+= ..+...+| .|...+...+|.+|-..+..++..
T Consensus 182 iEkGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 182 IEKGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHhCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhcc
Confidence 6653110 12233333 466677778888888888777644
No 479
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=62.76 E-value=1.6e+02 Score=35.35 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 632 YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 632 ~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
-..++++|.++|......+. -..++.|..+|..|++.++|.+|+..+-.+-.....
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~------------n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYN------------NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCT------------T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhc------------CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888777655432 122356788999999999999999999988665433
No 480
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=61.41 E-value=65 Score=30.86 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=57.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HH
Q 002199 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK----LE 694 (954)
Q Consensus 619 ~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~k----al 694 (954)
+..+|+..+..+++-.+|-.|++|+.+..+-.. .............+-.+.+||..+...|+.+-.+++++- ++
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~--~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDE--SNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL 81 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 567788888899999999999999887654311 011111122333444678999999999999999999975 45
Q ss_pred hhCCCCcc
Q 002199 695 QVGSISDR 702 (954)
Q Consensus 695 ~l~p~~~~ 702 (954)
.+.|..+.
T Consensus 82 tLiPQCp~ 89 (140)
T PF10952_consen 82 TLIPQCPN 89 (140)
T ss_pred HhccCCCC
Confidence 56677665
No 481
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.35 E-value=35 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 796 VSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 796 l~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+..+|.-+...|++++|+.+|+.+++++-.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 344455555667777777777777776543
No 482
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.24 E-value=50 Score=34.84 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=55.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 455 G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
...+++.+.+.+||...+.-++..|.+. .....+-..|.-.|+|++|+..++-+-++.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda----------~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDA----------GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccc----------cchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3467888999999999999999999997 6777777888999999999999999999999873
No 483
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=61.17 E-value=17 Score=39.91 Aligned_cols=82 Identities=16% Similarity=0.030 Sum_probs=68.7
Q ss_pred HHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHcCCHHHHHHH
Q 002199 470 FYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR-AAKCHLVLGEIENAQHY 548 (954)
Q Consensus 470 ~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~-LA~iy~~lG~~eeAl~~ 548 (954)
.|.++-..-|.++ ..|...+....+.+-|.+--..|..++..+|.++..|.. -+.-+...++++.+...
T Consensus 95 ~~~R~tnkff~D~----------k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~ 164 (435)
T COG5191 95 ELYRSTNKFFNDP----------KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAM 164 (435)
T ss_pred eeehhhhcCCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHH
Confidence 3445555556665 788888888888899999999999999999999998877 56667888999999999
Q ss_pred HHHHHhhchhhhh
Q 002199 549 YHKLLNSAAAVCL 561 (954)
Q Consensus 549 yekaL~l~P~~~~ 561 (954)
|.++|+++|+++.
T Consensus 165 f~~glR~N~~~p~ 177 (435)
T COG5191 165 FLKGLRMNSRSPR 177 (435)
T ss_pred HHhhhccCCCCch
Confidence 9999999998754
No 484
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.94 E-value=16 Score=42.33 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCC
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAAL-QALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y-~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
+..++..|-+|+..++|.+|+..|..+|-.- ......+.....-+ .-.+..++....+.-++.+.|.
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL~yi----~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQILLYI----QRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 4567788999999999999999998887542 11110111111111 1234566666666667777775
No 485
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.13 E-value=24 Score=34.71 Aligned_cols=51 Identities=20% Similarity=0.025 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIE 543 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~e 543 (954)
.....+|...+..|+|.-|++.+..++..+|++..+...++.+|.++|.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 567778888888999999999999999999999999999998888876544
No 486
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=59.04 E-value=2e+02 Score=33.43 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
......+.++..+.++....+|..|.....+++-.+.. ++....++.++..++.++.+-+.--.++..+-+++...
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k----~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK----GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Q ss_pred CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH
Q 002199 523 PNF------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596 (954)
Q Consensus 523 P~~------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~ 596 (954)
..+ ..+-..+|..+..+|..+.|+..+..++.. .+..|-.+
T Consensus 344 sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~---------------------------------Il~~GgL~ 390 (482)
T KOG4322|consen 344 SEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHL---------------------------------ILVQGGLD 390 (482)
T ss_pred HHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhH---------------------------------HHhccchh
Q ss_pred HHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHH
Q 002199 597 AASSALERINEALSISSCS---------EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARL 667 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~~P~~---------~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l 667 (954)
+-..|+-.+.+.....|.+ ++.+......+.+++-.+.+.+
T Consensus 391 drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ild------------------------------ 440 (482)
T KOG4322|consen 391 DRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILD------------------------------ 440 (482)
T ss_pred hcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHH------------------------------
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCC
Q 002199 668 WRWRLISKSYFCIGK---LEVALDLLQKLEQVGSIS 700 (954)
Q Consensus 668 ~a~~~Lg~~y~~lG~---~eeAl~~l~kal~l~p~~ 700 (954)
+.+.++..|-..|+ .+++...|+++....|..
T Consensus 441 -v~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~p 475 (482)
T KOG4322|consen 441 -VTYFSAYQYNHLGDSPERNLLASLFRKAWRYLELP 475 (482)
T ss_pred -HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCCc
No 487
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.75 E-value=3.1e+02 Score=30.96 Aligned_cols=76 Identities=7% Similarity=0.003 Sum_probs=47.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh--h---hh--------ccCcc---hhhHHHHHHHHHHHHHHHHcCCH
Q 002199 620 EMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS--V---LA--------DNGSV---TYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 620 ~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~--~---~~--------~~~~~---~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
+..|.+++..++|.+....+..+-+........ . .+ ..... ...+.+.+.++.+|.-|+...++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 345778888888877666555443221111000 0 00 00000 34466677788899999999999
Q ss_pred HHHHHHHHHHHh
Q 002199 684 EVALDLLQKLEQ 695 (954)
Q Consensus 684 eeAl~~l~kal~ 695 (954)
+.|+-.|+++.+
T Consensus 142 ~~ArVEfnRan~ 153 (449)
T COG3014 142 AKARVEFNRANE 153 (449)
T ss_pred hhhHHHHHHHHH
Confidence 999999999865
No 488
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.72 E-value=3.1e+02 Score=30.87 Aligned_cols=104 Identities=15% Similarity=0.115 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
++..+|..|.+.|+-+.|++.+++.... ...+...+..+.....+|..|....-..+-|+.....+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~k--------------tvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~li 171 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEK--------------TVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLI 171 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH--------------HhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 6778888899999999999888877542 22333344445555566777666555555555544444
Q ss_pred hhccC-CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 749 STNIE-SRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 749 ~l~~~-~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
+..-+ ...+...+| -|.-.+...+|.+|-..|-.++.-
T Consensus 172 E~GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 172 EEGGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HhCCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHccc
Confidence 43210 012223333 355556667888888877776643
No 489
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.44 E-value=8.7e+02 Score=36.01 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Q 002199 666 RLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG-RYTEAVEHY 744 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g-~~eeAi~~y 744 (954)
..|+....|.+....|-++.++..+.+...+-.-... .....+...+.+|+... .+..+++..
T Consensus 2735 ~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiq----------------daF~K~req~~c~l~~~~e~~~gLevi 2798 (3550)
T KOG0889|consen 2735 LAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQ----------------DAFQKLREQAKCYLQNKNELKTGLEVI 2798 (3550)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHH----------------HHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4566667788888888888888888887654221111 11112223334444333 344444443
Q ss_pred HHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 745 TVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 745 ~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
+..=-.+ =.....+..+...|..+.++|+.++|-..|..|++++-.-+.+|...|.-..
T Consensus 2799 ~sTNl~y-F~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~ 2857 (3550)
T KOG0889|consen 2799 ESTNLMY-FSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLD 2857 (3550)
T ss_pred hcccHHH-HhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3210000 0114567788888999999999999999999999998888888888876543
No 490
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.86 E-value=16 Score=28.29 Aligned_cols=27 Identities=15% Similarity=0.421 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
.+.||.+|..+|+++.|...++.++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 467899999999999999999999863
No 491
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.86 E-value=43 Score=32.96 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 002199 578 KVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKY 632 (954)
Q Consensus 578 ~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~ 632 (954)
-....+..+...+..|++. -|++.+..++..+|++..+...++.+|..+|.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~---wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQ---WAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HH---HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 4667788888899999998 788888899999999999999999999888753
No 492
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.81 E-value=5.2e+02 Score=33.23 Aligned_cols=185 Identities=10% Similarity=-0.051 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhhh-hhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHH
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVAE-KNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL--EVALDLLQKLE 694 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p-~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~--eeAl~~l~kal 694 (954)
-+..|+.+|...|++++|++++.....-.. .+. ..... +-.+-..+-.++.. +-.+++-.=.+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~--------~~~~~------~e~ii~YL~~l~~~~~~Li~~y~~wvl 571 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDS--------FQLDG------LEKIIEYLKKLGAENLDLILEYADWVL 571 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccccc--------chhhh------HHHHHHHHHHhcccchhHHHHHhhhhh
Confidence 467788999999999999999999877432 110 00011 11111122223332 44555555555
Q ss_pred hhCCCCcchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh-
Q 002199 695 QVGSISDRYGSEILESSMSLAGTVRALLH-HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL- 772 (954)
Q Consensus 695 ~l~p~~~~~~~~~l~~~~~l~~~~~~~~~-~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l- 772 (954)
..+|.......... ....+.. -...-.-|+......-+|.+++.++..+... ....+..++..|...
T Consensus 572 ~~~p~~gi~Ift~~--------~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~---~~~lht~ll~ly~e~v 640 (877)
T KOG2063|consen 572 NKNPEAGIQIFTSE--------DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT---STLLHTVLLKLYLEKV 640 (877)
T ss_pred ccCchhheeeeecc--------ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc---chHHHHHHHHHHHHHH
Confidence 54444322111100 0000000 0112334567788888999999998876322 333344444444322
Q ss_pred -------cCHHHHHHH--HHHHHH-------hCCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 773 -------GQIADAIAD--CSLAMA-------LDEN-------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 773 -------g~~eeAi~~--~ekAL~-------ldP~-------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++-++|.+. .++... .+|. ....|..++.++.++|+.++|+..|-..|.-.+.+.
T Consensus 641 ~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~ 718 (877)
T KOG2063|consen 641 LEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAE 718 (877)
T ss_pred hhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHH
Confidence 222344444 222221 1222 245677889999999999999999988777544433
No 493
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.73 E-value=17 Score=40.05 Aligned_cols=80 Identities=9% Similarity=0.188 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSN-RAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~-lA~~y~~lg~~eeAl~~~~kALel 521 (954)
..+.+...|...+....+.|-|.+--..|.++++..|.+. .+|.. -+.-+...++++.|...+.++|.+
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nv----------dlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNV----------DLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----------eeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 3455667777777777788899999999999999999997 66665 556677889999999999999999
Q ss_pred CCCcHHHHHHH
Q 002199 522 DPNFLKVYMRA 532 (954)
Q Consensus 522 ~P~~~~a~~~L 532 (954)
+|+.+..|+..
T Consensus 172 N~~~p~iw~ey 182 (435)
T COG5191 172 NSRSPRIWIEY 182 (435)
T ss_pred CCCCchHHHHH
Confidence 99998887653
No 494
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=57.47 E-value=47 Score=31.72 Aligned_cols=77 Identities=21% Similarity=0.162 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccc-ccCCch----HHHHHHHHHHHHHHcCCHHHHHHHHHHH----H
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETA-GCCIKP----LVLCYSNRAATRISLGRMREALEDCMMA----A 519 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~-~~~~~~----la~~~~~lA~~y~~lg~~eeAl~~~~kA----L 519 (954)
+.+..+|+..++.+++-.||-+|++|+.+..+-... ...... .+....|+|..+..+|+.+-.+++++-| +
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL 81 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999875433100 011111 2445568888888888888888887554 4
Q ss_pred hcCCCc
Q 002199 520 TVDPNF 525 (954)
Q Consensus 520 el~P~~ 525 (954)
.+-|..
T Consensus 82 tLiPQC 87 (140)
T PF10952_consen 82 TLIPQC 87 (140)
T ss_pred HhccCC
Confidence 455554
No 495
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=57.23 E-value=20 Score=34.57 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=30.2
Q ss_pred hhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHH
Q 002199 868 FYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKA 911 (954)
Q Consensus 868 yYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~ 911 (954)
-.+||+|++..+..+|.+.|.+|-...+|+++-..=+--++.++
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rA 103 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRA 103 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHH
Confidence 37899999999999999999999999999998766444333333
No 496
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=57.21 E-value=2.2e+02 Score=31.78 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 706 EILESSMSLAGTVRALLHHK---SAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADC 782 (954)
Q Consensus 706 ~~l~~~~~l~~~~~~~~~~~---~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ 782 (954)
.++..+..+.....-+.... .+-......++-..-++++++-..+. |....+++..|...+..|+|..|-.++
T Consensus 77 ~Vla~lkeLe~ev~piv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~----~e~i~~lykyakfqyeCGNY~gAs~yL 152 (432)
T KOG2758|consen 77 EVLAELKELEEEVAPIVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFT----PERIETLYKYAKFQYECGNYSGASDYL 152 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhccCcccHHHHH
Q ss_pred HHHHHh----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 783 SLAMAL----DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 783 ekAL~l----dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
-....+ ++++..+++..-..-.-+.+|+.|.+.+.+.-+...+..
T Consensus 153 Y~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~ 201 (432)
T KOG2758|consen 153 YFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKS 201 (432)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccc
No 497
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=56.58 E-value=1.1e+02 Score=35.88 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----CCchhhHHHH--------HHHHHHHH-Hhc-----CHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNI----ESRPFAAICF--------CNRAAALQ-ALG-----QIADAIADCS 783 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~----~~~p~~a~~~--------~~lA~~y~-~lg-----~~eeAi~~~e 783 (954)
......|..++..|+|.+|+..|+.+|..-| ++......+. |.+|.... ... ..++..+.++
T Consensus 205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lE 284 (422)
T PF06957_consen 205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLE 284 (422)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 3344578889999999999999999987632 2211111221 12221111 111 1223333344
Q ss_pred HHH-----HhCCCCHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 784 LAM-----ALDENYTKAVSRRA-ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 784 kAL-----~ldP~~~~al~~lA-~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+. .|.|.+...-++.| .+.++.++|.-|...-+++|++.|..
T Consensus 285 LAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 285 LAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 332 33444433333333 34578899999999999999996654
No 498
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=55.86 E-value=25 Score=29.69 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS 477 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~ 477 (954)
+.+-.+...|..+-+.|+|.+|+.+|.+++..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35667788888899999999999999887764
No 499
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=55.58 E-value=2.5e+02 Score=28.94 Aligned_cols=163 Identities=12% Similarity=0.021 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHH-ccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH-----HcCCHHHHH
Q 002199 614 CSEKLLEMKADALYM-LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF-----CIGKLEVAL 687 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~-lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~-----~lG~~eeAl 687 (954)
..|+.-..|+..+.- ..++++|..+|...-+.+.-. -.++.+|..++ ..+++..|+
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~------------------kSCyKyG~y~~~GKgG~~~~l~~a~ 93 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYP------------------KSCYKYGMYMLAGKGGDDASLSKAI 93 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc------------------HHHHHhhhhhhcccCCCccCHHHHH
Confidence 345666667765554 457788888777655443211 03455555444 345688888
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cC--CHHHHHHHHHHHHhhccCCchhhHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK-----SG--RYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~-----~g--~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
+.|..+-.... + .+...+|.++.. .+ +.++|.++++++-.+. +..
T Consensus 94 r~~~~aC~~n~--~--------------------~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~------~~~ 145 (248)
T KOG4014|consen 94 RPMKIACDANI--P--------------------QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE------DGE 145 (248)
T ss_pred HHHHHHhccCC--H--------------------HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC------Cch
Confidence 88888765321 1 122223333322 22 3677888888876654 222
Q ss_pred HHHHHH------------------------HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCHHHH
Q 002199 761 CFCNRA------------------------AALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMI----RDYTQA 812 (954)
Q Consensus 761 ~~~~lA------------------------~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l----g~~eeA 812 (954)
+.++|. ..+.-..+.+.|+++.-+|-+++ ++.+.-++.+.|..- .+.++|
T Consensus 146 aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~A 223 (248)
T KOG4014|consen 146 ACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQA 223 (248)
T ss_pred HHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHH
Confidence 222222 33334466777888777777764 566666666666432 367788
Q ss_pred HHHHHHHHHHhh
Q 002199 813 ASDLQRLVSILE 824 (954)
Q Consensus 813 i~~~ekAL~l~p 824 (954)
..+-.+|+++..
T Consensus 224 ekyk~rA~e~~~ 235 (248)
T KOG4014|consen 224 EKYKDRAKEIME 235 (248)
T ss_pred HHHHHHHHHHHH
Confidence 888888877743
No 500
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=55.54 E-value=1.5e+02 Score=34.14 Aligned_cols=103 Identities=11% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH------
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRI--SLGRMREALEDCMMAA------ 519 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~--~lg~~eeAl~~~~kAL------ 519 (954)
...-..++..+++.++|..|...|..++...+... .......|..++.+|. ..-++++|.+.+++.+
T Consensus 130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~-----~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~ 204 (380)
T TIGR02710 130 GNTEQGYARRAINAFDYLFAHARLETLLRRLLSAV-----NHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLAL 204 (380)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChh-----hhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhh
Q ss_pred -----------------hcCCC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 520 -----------------TVDPN------------------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 520 -----------------el~P~------------------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
.+-|. ...-++.=|..-...|+|+.|+..+-+++++
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 205 YQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred hhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Done!