Query 002199
Match_columns 954
No_of_seqs 883 out of 5549
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y4t_A DNAJ homolog subfamily 100.0 8.1E-41 2.8E-45 385.9 48.7 424 441-927 19-449 (450)
2 3ieg_A DNAJ homolog subfamily 100.0 9E-33 3.1E-37 306.2 48.0 350 447-854 2-354 (359)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-32 5.9E-37 311.1 39.7 325 444-854 29-353 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-32 3.8E-37 312.7 36.4 323 443-851 62-384 (388)
5 2gw1_A Mitochondrial precursor 100.0 2.1E-30 7.1E-35 303.0 36.2 326 445-826 3-405 (514)
6 3fp2_A TPR repeat-containing p 100.0 7.1E-30 2.4E-34 300.9 36.5 333 439-827 16-412 (537)
7 2y4t_A DNAJ homolog subfamily 100.0 3E-28 1E-32 280.6 37.6 344 422-826 38-414 (450)
8 3hym_B Cell division cycle pro 100.0 3.3E-28 1.1E-32 266.9 31.5 302 445-810 19-322 (330)
9 2xpi_A Anaphase-promoting comp 100.0 3.8E-27 1.3E-31 282.0 41.6 332 445-827 197-584 (597)
10 3fp2_A TPR repeat-containing p 100.0 9.7E-28 3.3E-32 282.6 35.7 335 444-829 55-498 (537)
11 3ieg_A DNAJ homolog subfamily 100.0 4.9E-27 1.7E-31 260.0 39.0 308 444-808 33-355 (359)
12 3hym_B Cell division cycle pro 100.0 1.7E-27 5.8E-32 261.2 32.8 297 472-850 12-314 (330)
13 4g1t_A Interferon-induced prot 100.0 1.2E-27 4.2E-32 278.0 32.6 373 445-859 48-449 (472)
14 1fch_A Peroxisomal targeting s 100.0 4.1E-28 1.4E-32 271.4 25.9 302 456-825 33-362 (368)
15 2gw1_A Mitochondrial precursor 100.0 8.4E-27 2.9E-31 272.4 36.5 338 448-828 39-484 (514)
16 2xpi_A Anaphase-promoting comp 100.0 1.6E-26 5.6E-31 276.5 38.6 349 449-859 118-535 (597)
17 4g1t_A Interferon-induced prot 100.0 9.6E-27 3.3E-31 270.4 27.9 323 443-827 89-464 (472)
18 4eqf_A PEX5-related protein; a 99.9 1.1E-26 3.8E-31 260.7 25.1 282 445-823 62-357 (365)
19 3cv0_A Peroxisome targeting si 99.9 7.8E-26 2.7E-30 247.6 27.7 286 447-826 20-319 (327)
20 1fch_A Peroxisomal targeting s 99.9 1.2E-25 4.1E-30 251.4 27.5 288 447-788 63-359 (368)
21 3sf4_A G-protein-signaling mod 99.9 9.7E-25 3.3E-29 246.5 29.6 324 447-817 8-371 (406)
22 4eqf_A PEX5-related protein; a 99.9 9.5E-25 3.3E-29 244.9 28.4 295 512-858 47-345 (365)
23 4a1s_A PINS, partner of inscut 99.9 7E-24 2.4E-28 241.4 31.1 304 444-828 44-378 (411)
24 2h6f_A Protein farnesyltransfe 99.9 4E-24 1.4E-28 244.0 27.5 257 442-772 91-366 (382)
25 2h6f_A Protein farnesyltransfe 99.9 1.2E-24 4E-29 248.3 22.4 251 492-806 97-366 (382)
26 3uq3_A Heat shock protein STI1 99.9 1.7E-23 5.8E-28 220.8 29.3 102 445-557 2-110 (258)
27 3ro2_A PINS homolog, G-protein 99.9 1.4E-23 4.7E-28 229.0 29.3 298 447-825 4-335 (338)
28 3sf4_A G-protein-signaling mod 99.9 2E-23 7E-28 235.6 30.6 294 492-826 9-340 (406)
29 3u4t_A TPR repeat-containing p 99.9 2.7E-23 9.1E-28 222.3 26.8 256 448-807 3-269 (272)
30 3uq3_A Heat shock protein STI1 99.9 5.5E-23 1.9E-27 216.9 27.7 253 491-849 4-256 (258)
31 3u4t_A TPR repeat-containing p 99.9 8.8E-23 3E-27 218.3 24.7 244 493-830 4-258 (272)
32 3cv0_A Peroxisome targeting si 99.9 2.9E-22 9.9E-27 219.2 28.3 282 493-859 22-305 (327)
33 2pl2_A Hypothetical conserved 99.9 1.9E-22 6.5E-27 211.1 21.3 200 445-694 2-212 (217)
34 3mkr_A Coatomer subunit epsilo 99.9 1.4E-21 4.7E-26 214.6 27.4 258 503-829 10-271 (291)
35 3mkr_A Coatomer subunit epsilo 99.9 3.1E-21 1.1E-25 211.8 29.5 250 492-816 34-288 (291)
36 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.3E-22 2.8E-26 210.5 22.1 255 458-816 15-269 (275)
37 2xm6_A Protein corresponding t 99.9 2.2E-19 7.7E-24 210.9 43.4 308 446-822 37-396 (490)
38 2xm6_A Protein corresponding t 99.9 1.9E-19 6.4E-24 211.6 42.7 310 447-824 74-434 (490)
39 2pl2_A Hypothetical conserved 99.9 2.3E-21 8E-26 202.8 23.2 196 493-748 6-212 (217)
40 2ooe_A Cleavage stimulation fa 99.9 3.2E-20 1.1E-24 220.4 35.6 185 600-824 256-456 (530)
41 3ro2_A PINS homolog, G-protein 99.9 3.9E-20 1.3E-24 201.5 28.3 259 493-826 6-296 (338)
42 1ouv_A Conserved hypothetical 99.9 1E-19 3.6E-24 195.8 30.5 99 725-831 150-260 (273)
43 4a1s_A PINS, partner of inscut 99.9 1.9E-20 6.6E-25 212.9 25.8 261 491-826 47-336 (411)
44 1ouv_A Conserved hypothetical 99.9 1.9E-19 6.5E-24 193.8 32.1 230 493-797 7-260 (273)
45 2pzi_A Probable serine/threoni 99.9 2E-21 6.8E-26 238.3 17.7 272 520-897 388-662 (681)
46 3vtx_A MAMA; tetratricopeptide 99.9 4.8E-20 1.6E-24 186.0 24.3 175 614-829 3-177 (184)
47 2q7f_A YRRB protein; TPR, prot 99.9 1.8E-20 6.3E-25 196.1 21.7 220 491-807 22-241 (243)
48 2q7f_A YRRB protein; TPR, prot 99.8 4.2E-20 1.4E-24 193.4 20.5 209 445-702 20-228 (243)
49 3vtx_A MAMA; tetratricopeptide 99.8 9.8E-20 3.4E-24 183.7 22.1 172 446-649 3-174 (184)
50 3ulq_A Response regulator aspa 99.8 3.8E-19 1.3E-23 201.5 29.3 332 445-824 9-370 (383)
51 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.1E-19 1.4E-23 189.5 27.4 232 443-744 38-269 (275)
52 4abn_A Tetratricopeptide repea 99.8 1.1E-19 3.9E-24 213.2 24.9 218 507-819 83-318 (474)
53 2ho1_A Type 4 fimbrial biogene 99.8 4.8E-19 1.6E-23 187.2 26.3 209 445-702 33-244 (252)
54 2ooe_A Cleavage stimulation fa 99.8 4.5E-18 1.5E-22 201.8 36.8 347 425-827 27-497 (530)
55 2ho1_A Type 4 fimbrial biogene 99.8 1.4E-18 4.7E-23 183.6 29.0 208 492-796 37-246 (252)
56 2vq2_A PILW, putative fimbrial 99.8 1.1E-18 3.9E-23 179.7 27.2 210 444-702 4-217 (225)
57 1hz4_A MALT regulatory protein 99.8 4.3E-18 1.5E-22 191.7 32.6 304 444-825 10-325 (373)
58 3nf1_A KLC 1, kinesin light ch 99.8 3.1E-19 1.1E-23 193.5 21.4 282 440-790 19-309 (311)
59 2ond_A Cleavage stimulation fa 99.8 2.5E-18 8.4E-23 189.5 28.7 279 443-801 3-305 (308)
60 4gyw_A UDP-N-acetylglucosamine 99.8 2.5E-19 8.6E-24 219.8 22.0 178 611-829 4-181 (723)
61 4abn_A Tetratricopeptide repea 99.8 4.1E-19 1.4E-23 208.5 21.7 215 463-747 83-318 (474)
62 3e4b_A ALGK; tetratricopeptide 99.8 1.5E-18 5.1E-23 202.5 26.3 301 452-822 7-351 (452)
63 3nf1_A KLC 1, kinesin light ch 99.8 8.3E-19 2.8E-23 190.1 21.9 266 490-825 25-310 (311)
64 2vq2_A PILW, putative fimbrial 99.8 7.5E-18 2.6E-22 173.5 27.8 65 491-555 7-71 (225)
65 4i17_A Hypothetical protein; T 99.8 5.2E-18 1.8E-22 177.4 26.6 158 448-681 7-167 (228)
66 4gyw_A UDP-N-acetylglucosamine 99.8 6.7E-19 2.3E-23 216.0 22.1 178 442-651 3-180 (723)
67 4i17_A Hypothetical protein; T 99.8 2.5E-18 8.6E-23 179.8 21.4 205 579-827 7-214 (228)
68 3ulq_A Response regulator aspa 99.8 4.8E-18 1.6E-22 192.5 24.2 256 450-790 105-370 (383)
69 3qky_A Outer membrane assembly 99.8 9.6E-18 3.3E-22 179.5 24.4 213 493-813 16-252 (261)
70 1qqe_A Vesicular transport pro 99.8 7.4E-18 2.5E-22 184.5 22.8 258 466-827 3-274 (292)
71 3q15_A PSP28, response regulat 99.8 6.1E-17 2.1E-21 183.3 30.6 330 448-825 12-368 (378)
72 3qky_A Outer membrane assembly 99.8 2.7E-17 9.3E-22 175.9 23.7 208 609-858 8-250 (261)
73 2ond_A Cleavage stimulation fa 99.8 1.4E-16 4.9E-21 175.4 29.6 230 509-827 33-275 (308)
74 3q15_A PSP28, response regulat 99.8 6.8E-17 2.3E-21 182.9 27.4 257 447-789 100-366 (378)
75 3e4b_A ALGK; tetratricopeptide 99.7 2.5E-17 8.5E-22 192.1 20.9 312 446-824 33-389 (452)
76 1qqe_A Vesicular transport pro 99.7 6.4E-17 2.2E-21 177.0 21.7 243 463-803 32-284 (292)
77 3urz_A Uncharacterized protein 99.7 6.3E-17 2.2E-21 167.9 18.2 172 447-649 3-190 (208)
78 3as5_A MAMA; tetratricopeptide 99.7 3.3E-16 1.1E-20 155.5 21.9 171 615-826 7-177 (186)
79 2pzi_A Probable serine/threoni 99.7 3.8E-17 1.3E-21 200.3 18.1 188 444-684 390-585 (681)
80 3as5_A MAMA; tetratricopeptide 99.7 4.9E-16 1.7E-20 154.3 21.1 173 446-650 6-178 (186)
81 1xi4_A Clathrin heavy chain; a 99.7 5.4E-15 1.8E-19 184.9 34.4 299 454-820 1055-1382(1630)
82 3dra_A Protein farnesyltransfe 99.7 3.6E-15 1.2E-19 164.2 26.4 243 456-802 40-302 (306)
83 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.2E-15 7.6E-20 157.9 23.7 191 448-650 4-218 (225)
84 3dra_A Protein farnesyltransfe 99.7 2.7E-15 9.1E-20 165.3 25.2 231 502-829 42-295 (306)
85 4ga2_A E3 SUMO-protein ligase 99.7 1.4E-16 4.8E-21 156.6 13.1 147 621-808 2-149 (150)
86 4gco_A Protein STI-1; structur 99.7 6.2E-16 2.1E-20 147.5 16.6 108 443-560 8-115 (126)
87 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.1E-15 1E-19 156.9 23.3 207 492-825 4-216 (225)
88 3urz_A Uncharacterized protein 99.7 1.5E-15 5.2E-20 157.4 20.3 186 615-826 3-190 (208)
89 1hz4_A MALT regulatory protein 99.7 2.1E-14 7.3E-19 161.3 31.4 260 492-825 14-285 (373)
90 3edt_B KLC 2, kinesin light ch 99.7 6.9E-16 2.4E-20 164.1 18.1 175 459-649 12-202 (283)
91 4ga2_A E3 SUMO-protein ligase 99.7 9E-17 3.1E-21 158.0 9.6 147 453-631 2-149 (150)
92 1xi4_A Clathrin heavy chain; a 99.7 1.4E-14 4.6E-19 181.3 30.9 313 451-826 988-1313(1630)
93 2ifu_A Gamma-SNAP; membrane fu 99.7 1.6E-15 5.6E-20 167.0 20.2 243 460-814 3-253 (307)
94 3edt_B KLC 2, kinesin light ch 99.7 1.6E-15 5.5E-20 161.3 19.4 247 504-788 13-281 (283)
95 2ifu_A Gamma-SNAP; membrane fu 99.6 4E-15 1.4E-19 163.9 18.0 176 623-825 43-226 (307)
96 4gco_A Protein STI-1; structur 99.6 8.3E-15 2.8E-19 139.7 16.2 106 719-828 11-116 (126)
97 3dss_A Geranylgeranyl transfer 99.6 2.1E-13 7.2E-18 151.2 29.5 164 456-651 37-228 (331)
98 2r5s_A Uncharacterized protein 99.6 3.7E-15 1.3E-19 149.9 14.1 168 613-822 3-173 (176)
99 3dss_A Geranylgeranyl transfer 99.6 2.3E-13 7.7E-18 150.9 28.6 237 504-827 41-309 (331)
100 2c2l_A CHIP, carboxy terminus 99.6 1.1E-14 3.7E-19 158.6 17.0 196 447-696 3-199 (281)
101 3qou_A Protein YBBN; thioredox 99.6 1.2E-14 4.1E-19 158.7 17.2 170 612-822 113-284 (287)
102 3qou_A Protein YBBN; thioredox 99.6 3.6E-14 1.2E-18 154.9 20.1 166 493-695 118-283 (287)
103 1b89_A Protein (clathrin heavy 99.6 1E-15 3.5E-20 174.3 7.4 270 448-819 32-308 (449)
104 1p5q_A FKBP52, FK506-binding p 99.6 1.4E-15 4.9E-20 170.1 7.8 200 600-827 83-299 (336)
105 2r5s_A Uncharacterized protein 99.6 1.2E-14 4E-19 146.2 12.2 165 448-645 6-173 (176)
106 4gcn_A Protein STI-1; structur 99.5 4.5E-14 1.5E-18 134.6 14.7 106 443-558 3-115 (127)
107 3gyz_A Chaperone protein IPGC; 99.5 3.9E-14 1.3E-18 139.8 14.3 110 440-559 28-137 (151)
108 2vsy_A XCC0866; transferase, g 99.5 7.8E-14 2.7E-18 166.9 19.8 159 629-828 2-163 (568)
109 2vsy_A XCC0866; transferase, g 99.5 5.4E-14 1.8E-18 168.3 18.2 159 461-651 2-163 (568)
110 2hr2_A Hypothetical protein; a 99.5 6.6E-14 2.3E-18 138.0 14.9 118 445-562 8-138 (159)
111 3upv_A Heat shock protein STI1 99.5 1.2E-13 4.2E-18 130.1 15.7 103 445-557 1-103 (126)
112 2qfc_A PLCR protein; TPR, HTH, 99.5 2.7E-13 9.2E-18 147.9 20.5 186 615-825 74-269 (293)
113 3q7a_A Farnesyltransferase alp 99.5 1.6E-12 5.5E-17 144.8 26.8 193 445-683 51-258 (349)
114 3gyz_A Chaperone protein IPGC; 99.5 9.9E-15 3.4E-19 144.1 7.7 102 721-826 36-137 (151)
115 2hr2_A Hypothetical protein; a 99.5 9.9E-14 3.4E-18 136.8 14.3 109 718-826 8-135 (159)
116 3q7a_A Farnesyltransferase alp 99.5 1.2E-12 4.1E-17 145.8 24.0 235 493-824 55-334 (349)
117 4f3v_A ESX-1 secretion system 99.5 5.6E-13 1.9E-17 144.0 20.6 228 493-797 8-245 (282)
118 2xcb_A PCRH, regulatory protei 99.5 4.5E-13 1.6E-17 129.6 18.0 113 440-562 10-122 (142)
119 3u3w_A Transcriptional activat 99.5 7.9E-13 2.7E-17 144.1 21.6 182 619-825 78-269 (293)
120 3upv_A Heat shock protein STI1 99.5 3.8E-13 1.3E-17 126.7 16.5 121 721-852 4-124 (126)
121 3rkv_A Putative peptidylprolyl 99.5 1.7E-13 6E-18 135.3 14.8 118 443-560 6-131 (162)
122 3rjv_A Putative SEL1 repeat pr 99.5 1E-12 3.5E-17 136.6 20.8 175 600-823 4-198 (212)
123 2vgx_A Chaperone SYCD; alterna 99.5 4.2E-13 1.4E-17 131.5 16.6 108 443-560 16-123 (148)
124 3rkv_A Putative peptidylprolyl 99.5 4.8E-13 1.6E-17 132.1 16.5 127 719-857 9-149 (162)
125 3sz7_A HSC70 cochaperone (SGT) 99.5 6.2E-13 2.1E-17 131.6 17.1 109 442-560 5-113 (164)
126 1dce_A Protein (RAB geranylger 99.5 6.2E-14 2.1E-18 167.7 11.6 200 583-825 32-270 (567)
127 2vgx_A Chaperone SYCD; alterna 99.5 1.2E-13 4.1E-18 135.4 11.5 102 721-826 21-122 (148)
128 2qfc_A PLCR protein; TPR, HTH, 99.5 2.9E-12 1E-16 139.6 23.0 189 444-696 71-266 (293)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.2E-13 4.2E-18 141.8 11.0 151 446-649 4-154 (213)
130 2fo7_A Synthetic consensus TPR 99.5 1.9E-12 6.4E-17 120.7 18.0 133 669-825 3-135 (136)
131 1p5q_A FKBP52, FK506-binding p 99.5 9.5E-13 3.3E-17 147.1 18.8 152 440-647 139-296 (336)
132 4f3v_A ESX-1 secretion system 99.5 2.1E-13 7.1E-18 147.4 12.6 204 446-699 5-240 (282)
133 1b89_A Protein (clathrin heavy 99.4 7.8E-14 2.7E-18 158.9 8.6 281 446-825 59-360 (449)
134 4gcn_A Protein STI-1; structur 99.4 8.5E-13 2.9E-17 125.6 14.0 103 719-825 6-115 (127)
135 3rjv_A Putative SEL1 repeat pr 99.4 6.9E-12 2.4E-16 130.3 22.1 175 466-751 4-198 (212)
136 1a17_A Serine/threonine protei 99.4 4.5E-12 1.5E-16 123.9 19.4 109 441-559 6-114 (166)
137 1a17_A Serine/threonine protei 99.4 6.5E-12 2.2E-16 122.8 19.7 136 666-825 12-149 (166)
138 3mv2_B Coatomer subunit epsilo 99.4 4.2E-12 1.4E-16 138.9 19.8 249 500-826 21-286 (310)
139 3sz7_A HSC70 cochaperone (SGT) 99.4 3.3E-12 1.1E-16 126.3 17.1 104 720-827 10-113 (164)
140 4e6h_A MRNA 3'-END-processing 99.4 1.9E-10 6.6E-15 139.7 35.9 343 443-824 61-535 (679)
141 2xcb_A PCRH, regulatory protei 99.4 2.8E-12 9.6E-17 124.0 15.9 103 721-827 18-120 (142)
142 3u3w_A Transcriptional activat 99.4 3.5E-12 1.2E-16 139.0 18.6 189 445-697 72-267 (293)
143 2fbn_A 70 kDa peptidylprolyl i 99.4 8.3E-13 2.8E-17 135.0 12.7 177 620-821 8-185 (198)
144 2fo7_A Synthetic consensus TPR 99.4 6.4E-12 2.2E-16 117.0 17.7 134 449-648 2-135 (136)
145 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.7E-12 9.3E-17 131.7 16.3 131 669-826 8-154 (213)
146 2vyi_A SGTA protein; chaperone 99.4 9.9E-12 3.4E-16 115.5 17.6 109 441-559 5-113 (131)
147 1dce_A Protein (RAB geranylger 99.4 6.7E-13 2.3E-17 158.8 11.7 195 457-700 37-271 (567)
148 3q49_B STIP1 homology and U bo 99.4 5.8E-12 2E-16 119.6 15.7 104 445-558 6-109 (137)
149 2lni_A Stress-induced-phosphop 99.4 5.1E-12 1.8E-16 118.4 14.6 109 441-559 9-117 (133)
150 3gw4_A Uncharacterized protein 99.4 2E-11 6.7E-16 123.7 20.0 170 626-826 2-180 (203)
151 1hxi_A PEX5, peroxisome target 99.4 2.6E-12 9E-17 121.2 12.2 100 450-559 19-118 (121)
152 2c2l_A CHIP, carboxy terminus 99.4 2.2E-12 7.6E-17 140.3 13.3 195 579-822 4-199 (281)
153 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.1E-12 3.9E-17 152.9 11.5 162 628-815 246-407 (457)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 5E-12 1.7E-16 147.4 16.5 121 439-559 259-384 (457)
155 2fbn_A 70 kDa peptidylprolyl i 99.4 1.2E-11 4.2E-16 126.2 17.1 126 435-560 25-156 (198)
156 2e2e_A Formate-dependent nitri 99.3 3.9E-12 1.3E-16 127.1 12.5 126 677-826 20-148 (177)
157 4b4t_Q 26S proteasome regulato 99.3 8.8E-11 3E-15 134.1 25.4 221 450-696 6-245 (434)
158 3q49_B STIP1 homology and U bo 99.3 2.5E-11 8.5E-16 115.2 17.4 102 721-826 9-110 (137)
159 1hxi_A PEX5, peroxisome target 99.3 7.7E-12 2.6E-16 118.0 12.8 99 724-826 20-118 (121)
160 3gw4_A Uncharacterized protein 99.3 3.2E-11 1.1E-15 122.2 17.5 169 458-697 2-177 (203)
161 1elw_A TPR1-domain of HOP; HOP 99.3 4.1E-11 1.4E-15 109.3 16.3 103 447-559 3-105 (118)
162 3ro3_A PINS homolog, G-protein 99.3 3E-11 1E-15 116.3 16.2 145 666-824 8-160 (164)
163 2e2e_A Formate-dependent nitri 99.3 7.3E-12 2.5E-16 125.1 11.7 130 456-617 18-150 (177)
164 2lni_A Stress-induced-phosphop 99.3 2.8E-11 9.6E-16 113.3 14.2 117 668-808 17-133 (133)
165 2if4_A ATFKBP42; FKBP-like, al 99.3 2.7E-12 9.2E-17 143.6 8.1 123 437-559 168-297 (338)
166 4b4t_Q 26S proteasome regulato 99.3 6.3E-11 2.2E-15 135.3 19.3 217 581-825 6-248 (434)
167 2vyi_A SGTA protein; chaperone 99.3 1E-10 3.5E-15 108.6 17.3 118 719-853 10-127 (131)
168 1wao_1 Serine/threonine protei 99.3 3.9E-12 1.3E-16 149.2 9.0 105 445-559 3-107 (477)
169 3ro3_A PINS homolog, G-protein 99.3 1.4E-10 4.9E-15 111.5 18.2 151 616-791 9-161 (164)
170 1elw_A TPR1-domain of HOP; HOP 99.3 9.3E-11 3.2E-15 106.9 15.9 102 721-826 4-105 (118)
171 2dba_A Smooth muscle cell asso 99.3 3.4E-11 1.2E-15 115.2 13.1 108 445-559 25-132 (148)
172 1elr_A TPR2A-domain of HOP; HO 99.3 5E-11 1.7E-15 110.9 13.9 103 446-558 2-111 (131)
173 1ihg_A Cyclophilin 40; ppiase 99.3 7.2E-11 2.5E-15 133.8 17.8 126 721-859 223-360 (370)
174 2xev_A YBGF; tetratricopeptide 99.2 8.8E-11 3E-15 110.1 14.9 104 449-559 3-109 (129)
175 1na0_A Designed protein CTPR3; 99.2 2.5E-10 8.6E-15 105.0 17.2 103 447-559 8-110 (125)
176 1ihg_A Cyclophilin 40; ppiase 99.2 6.9E-11 2.3E-15 133.9 16.1 119 442-560 217-341 (370)
177 3mv2_B Coatomer subunit epsilo 99.2 2.8E-10 9.4E-15 124.5 19.6 188 467-702 85-288 (310)
178 4e6h_A MRNA 3'-END-processing 99.2 7.6E-09 2.6E-13 125.7 34.0 352 442-828 94-576 (679)
179 1na0_A Designed protein CTPR3; 99.2 3.5E-10 1.2E-14 104.0 17.2 115 669-807 11-125 (125)
180 2kck_A TPR repeat; tetratricop 99.2 1.7E-11 6E-16 110.9 7.9 103 447-559 5-110 (112)
181 2dba_A Smooth muscle cell asso 99.2 1.6E-10 5.5E-15 110.4 15.0 105 721-826 28-132 (148)
182 2xev_A YBGF; tetratricopeptide 99.2 3.1E-10 1.1E-14 106.3 16.6 103 724-827 5-110 (129)
183 1elr_A TPR2A-domain of HOP; HO 99.2 2.2E-10 7.4E-15 106.5 14.8 100 721-824 4-110 (131)
184 1zu2_A Mitochondrial import re 99.2 2.6E-11 8.8E-16 119.3 8.7 91 459-559 13-124 (158)
185 2if4_A ATFKBP42; FKBP-like, al 99.2 5.3E-11 1.8E-15 133.0 10.1 104 719-826 177-297 (338)
186 1zu2_A Mitochondrial import re 99.1 5.5E-11 1.9E-15 117.0 8.1 93 733-829 14-127 (158)
187 3k9i_A BH0479 protein; putativ 99.1 1.5E-10 5.2E-15 107.7 10.4 95 733-828 2-96 (117)
188 1wao_1 Serine/threonine protei 99.1 1.6E-11 5.4E-16 144.0 4.3 133 669-825 8-153 (477)
189 2kck_A TPR repeat; tetratricop 99.1 2.1E-10 7.2E-15 103.6 9.2 99 723-825 8-109 (112)
190 3k9i_A BH0479 protein; putativ 99.1 1E-10 3.5E-15 108.9 7.2 90 460-559 2-94 (117)
191 2l6j_A TPR repeat-containing p 99.1 7.5E-11 2.6E-15 107.3 6.0 95 447-551 3-103 (111)
192 2ctq_A DNAJ homolog subfamily 99.1 1.9E-11 6.6E-16 113.8 1.9 86 863-949 17-106 (112)
193 2och_A Hypothetical protein DN 99.1 6.3E-11 2.1E-15 101.5 4.8 66 864-930 6-72 (73)
194 2dn9_A DNAJ homolog subfamily 99.1 1E-10 3.5E-15 101.8 5.0 66 864-930 5-74 (79)
195 1gh6_A Large T antigen; tumor 99.0 2.7E-11 9.2E-16 112.5 1.1 65 866-931 8-74 (114)
196 2ej7_A HCG3 gene; HCG3 protein 99.0 1.6E-10 5.4E-15 101.4 5.9 67 864-931 7-78 (82)
197 1hdj_A Human HSP40, HDJ-1; mol 99.0 1.3E-10 4.3E-15 100.7 5.1 65 866-931 3-70 (77)
198 2uy1_A Cleavage stimulation fa 99.0 2.6E-07 9E-12 108.5 35.0 187 447-650 13-246 (493)
199 2lgw_A DNAJ homolog subfamily 99.0 5.5E-11 1.9E-15 108.0 2.5 65 866-931 2-71 (99)
200 2ctp_A DNAJ homolog subfamily 99.0 1.2E-10 4.1E-15 101.2 4.1 67 864-931 5-74 (78)
201 2ctr_A DNAJ homolog subfamily 99.0 1.9E-10 6.5E-15 102.3 5.3 66 864-930 5-73 (88)
202 2ctw_A DNAJ homolog subfamily 99.0 5.7E-11 2E-15 110.0 1.8 82 864-946 15-104 (109)
203 2cug_A Mkiaa0962 protein; DNAJ 99.0 1.9E-10 6.4E-15 102.3 4.1 66 864-930 15-83 (88)
204 2l6j_A TPR repeat-containing p 99.0 4.9E-10 1.7E-14 101.8 6.0 94 721-818 4-103 (111)
205 2dmx_A DNAJ homolog subfamily 99.0 3.8E-10 1.3E-14 101.3 4.8 66 864-930 7-77 (92)
206 2o37_A Protein SIS1; HSP40, J- 99.0 3.2E-10 1.1E-14 101.7 4.3 66 865-931 7-73 (92)
207 1na3_A Designed protein CTPR2; 98.9 5.4E-09 1.8E-13 91.2 12.0 86 445-540 6-91 (91)
208 2kat_A Uncharacterized protein 98.9 8.9E-09 3.1E-13 95.0 13.9 84 466-559 3-86 (115)
209 2kat_A Uncharacterized protein 98.9 7.4E-09 2.5E-13 95.5 13.0 85 739-827 3-87 (115)
210 1bq0_A DNAJ, HSP40; chaperone, 98.9 4.6E-10 1.6E-14 102.9 4.1 65 866-931 3-71 (103)
211 2yua_A Williams-beuren syndrom 98.9 6.9E-10 2.4E-14 100.9 5.0 66 864-930 15-84 (99)
212 2qsa_A DNAJ homolog DNJ-2; J-d 98.9 2E-10 6.9E-15 106.5 0.2 66 864-930 13-86 (109)
213 1wjz_A 1700030A21RIK protein; 98.9 7.9E-10 2.7E-14 99.6 3.8 65 864-929 14-88 (94)
214 2pf4_E Small T antigen; PP2A, 98.9 1.8E-10 6E-15 114.4 -1.3 66 865-931 10-77 (174)
215 3n71_A Histone lysine methyltr 98.8 2.3E-08 7.8E-13 117.1 15.5 149 447-646 308-465 (490)
216 2kc7_A BFR218_protein; tetratr 98.8 5.2E-09 1.8E-13 93.5 7.8 91 451-559 3-94 (99)
217 1na3_A Designed protein CTPR2; 98.8 3.7E-08 1.3E-12 85.8 12.8 83 721-807 9-91 (91)
218 3n71_A Histone lysine methyltr 98.8 4.9E-08 1.7E-12 114.2 17.0 139 672-822 314-464 (490)
219 3apq_A DNAJ homolog subfamily 98.8 1.7E-09 5.8E-14 112.3 3.6 65 866-931 2-70 (210)
220 2uy1_A Cleavage stimulation fa 98.8 2.1E-06 7.2E-11 100.7 30.1 309 460-819 6-380 (493)
221 2kc7_A BFR218_protein; tetratr 98.8 1.6E-08 5.5E-13 90.3 8.8 90 725-826 4-94 (99)
222 3ma5_A Tetratricopeptide repea 98.7 2.7E-08 9.1E-13 89.9 9.6 73 756-828 4-76 (100)
223 1faf_A Large T antigen; J doma 98.7 3.7E-09 1.3E-13 91.7 3.5 62 866-929 11-74 (79)
224 2l6l_A DNAJ homolog subfamily 98.7 5.1E-09 1.7E-13 103.4 4.6 66 863-929 7-82 (155)
225 3ma5_A Tetratricopeptide repea 98.7 8E-08 2.7E-12 86.8 11.5 67 493-559 8-74 (100)
226 2ys8_A RAB-related GTP-binding 98.7 7.5E-09 2.6E-13 92.3 4.0 58 865-923 26-86 (90)
227 2qwo_B Putative tyrosine-prote 98.7 8.6E-09 2.9E-13 91.4 3.6 50 866-915 33-89 (92)
228 2guz_A Mitochondrial import in 98.6 2E-08 6.7E-13 85.3 3.4 52 866-917 14-66 (71)
229 1iur_A KIAA0730 protein; DNAJ 98.6 4.4E-08 1.5E-12 86.6 5.0 53 865-917 15-72 (88)
230 3lz8_A Putative chaperone DNAJ 98.6 7.5E-09 2.6E-13 114.2 0.0 64 865-929 27-93 (329)
231 3ly7_A Transcriptional activat 98.5 1.1E-06 3.8E-11 97.8 15.9 157 473-701 185-344 (372)
232 1klx_A Cysteine rich protein B 98.5 1.3E-06 4.5E-11 84.0 13.9 110 681-822 9-126 (138)
233 1klx_A Cysteine rich protein B 98.5 1.3E-06 4.3E-11 84.1 13.7 121 630-801 9-137 (138)
234 1n4c_A Auxilin; four helix bun 98.5 3.7E-08 1.3E-12 98.3 2.1 59 866-925 117-182 (182)
235 3ag7_A Putative uncharacterize 98.5 5.9E-08 2E-12 88.9 3.0 52 865-917 40-102 (106)
236 3hho_A CO-chaperone protein HS 98.4 4.5E-08 1.5E-12 98.2 2.3 63 865-928 3-76 (174)
237 1fpo_A HSC20, chaperone protei 98.4 5.6E-08 1.9E-12 97.1 2.3 62 867-929 2-74 (171)
238 3ly7_A Transcriptional activat 98.4 3.4E-06 1.2E-10 93.9 16.4 136 448-616 196-344 (372)
239 3qwp_A SET and MYND domain-con 98.4 1.2E-06 4.1E-11 100.9 13.0 99 727-825 293-403 (429)
240 3qww_A SET and MYND domain-con 98.4 2.3E-06 7.7E-11 98.6 15.3 98 728-825 305-414 (433)
241 3bee_A Putative YFRE protein; 98.4 1E-06 3.5E-11 78.9 9.4 70 756-825 3-75 (93)
242 3u64_A Protein TP_0956; tetrat 98.4 2.1E-05 7.2E-10 84.2 20.7 86 736-825 178-272 (301)
243 3bvo_A CO-chaperone protein HS 98.3 1.3E-07 4.3E-12 97.4 2.6 62 865-927 42-114 (207)
244 3qww_A SET and MYND domain-con 98.3 2.2E-06 7.7E-11 98.6 12.4 102 453-556 303-412 (433)
245 3bee_A Putative YFRE protein; 98.3 4.1E-06 1.4E-10 75.0 11.3 66 493-558 7-75 (93)
246 3uo3_A J-type CO-chaperone JAC 98.3 1.7E-07 6E-12 94.3 2.3 65 862-927 7-79 (181)
247 2v5f_A Prolyl 4-hydroxylase su 98.3 7.3E-06 2.5E-10 74.6 12.3 78 723-800 7-87 (104)
248 3apo_A DNAJ homolog subfamily 98.3 9.2E-08 3.2E-12 118.8 -0.9 66 865-931 20-89 (780)
249 3u64_A Protein TP_0956; tetrat 98.2 2.7E-05 9.4E-10 83.3 17.5 111 610-754 146-273 (301)
250 3qwp_A SET and MYND domain-con 98.2 6.3E-06 2.2E-10 94.8 13.7 106 448-555 287-400 (429)
251 2v5f_A Prolyl 4-hydroxylase su 98.2 1E-05 3.5E-10 73.6 11.3 83 448-533 5-87 (104)
252 1pc2_A Mitochondria fission pr 98.1 1.5E-05 5.2E-10 77.4 11.5 88 463-560 13-105 (152)
253 1pc2_A Mitochondria fission pr 98.0 2.2E-05 7.5E-10 76.3 10.7 89 737-829 14-107 (152)
254 2guz_B Mitochondrial import in 97.7 2.9E-05 9.9E-10 64.0 4.6 48 868-915 6-56 (65)
255 4g26_A Pentatricopeptide repea 97.5 0.0049 1.7E-07 72.2 21.2 165 618-822 28-204 (501)
256 1nzn_A CGI-135 protein, fissio 97.3 0.0017 5.7E-08 60.9 11.5 90 461-560 14-108 (126)
257 3ffl_A Anaphase-promoting comp 97.2 0.0014 4.6E-08 64.2 9.9 102 450-552 22-148 (167)
258 1nzn_A CGI-135 protein, fissio 97.1 0.0023 7.8E-08 60.0 10.1 90 736-829 16-110 (126)
259 4g26_A Pentatricopeptide repea 97.1 0.029 1E-06 65.5 21.6 160 451-645 29-204 (501)
260 3ffl_A Anaphase-promoting comp 96.8 0.0065 2.2E-07 59.4 11.1 96 723-818 22-147 (167)
261 3txn_A 26S proteasome regulato 96.7 0.12 4.1E-06 58.2 21.7 124 671-808 103-235 (394)
262 3txn_A 26S proteasome regulato 96.5 0.2 6.7E-06 56.4 21.6 176 617-824 20-212 (394)
263 4h7y_A Dual specificity protei 96.4 0.024 8.3E-07 54.3 11.6 110 446-558 11-126 (161)
264 3o48_A Mitochondria fission 1 96.3 0.042 1.4E-06 51.6 12.5 80 722-804 41-123 (134)
265 3mkq_A Coatomer beta'-subunit; 96.2 0.18 6E-06 61.7 21.1 29 614-642 679-707 (814)
266 1y8m_A FIS1; mitochondria, unk 96.2 0.051 1.7E-06 51.7 12.2 77 723-802 41-120 (144)
267 1y8m_A FIS1; mitochondria, unk 96.2 0.035 1.2E-06 52.8 11.0 80 447-535 38-120 (144)
268 3o48_A Mitochondria fission 1 96.1 0.033 1.1E-06 52.4 10.4 79 448-535 40-121 (134)
269 3mkq_A Coatomer beta'-subunit; 96.0 0.25 8.5E-06 60.3 21.5 19 496-514 633-651 (814)
270 2ff4_A Probable regulatory pro 95.9 0.12 4E-06 58.3 16.3 99 724-822 118-234 (388)
271 4gns_B Protein CSD3, chitin bi 95.7 0.047 1.6E-06 66.4 12.5 61 616-693 337-397 (754)
272 2ff4_A Probable regulatory pro 95.6 0.15 5.2E-06 57.3 15.7 110 445-554 112-233 (388)
273 4h7y_A Dual specificity protei 95.3 0.21 7.1E-06 48.0 12.8 117 520-651 7-129 (161)
274 1qsa_A Protein (soluble lytic 95.2 4.4 0.00015 48.2 27.0 129 672-821 219-347 (618)
275 4gns_B Protein CSD3, chitin bi 94.9 0.14 4.9E-06 62.1 13.1 61 759-819 337-397 (754)
276 4b4t_P 26S proteasome regulato 94.7 2.4 8.3E-05 48.4 22.1 103 722-824 138-249 (445)
277 4b4t_P 26S proteasome regulato 94.5 2.2 7.7E-05 48.6 21.4 106 669-788 139-247 (445)
278 3kae_A CDC27, possible protein 94.5 1.9 6.6E-05 41.9 16.9 93 451-558 36-146 (242)
279 1zbp_A Hypothetical protein VP 93.5 1.4 4.6E-05 46.5 15.2 120 501-649 6-133 (273)
280 3kae_A CDC27, possible protein 93.2 1.9 6.7E-05 41.9 14.3 186 612-825 29-240 (242)
281 3mkq_B Coatomer subunit alpha; 91.7 2.7 9.4E-05 41.5 13.9 49 624-694 13-61 (177)
282 4b4t_R RPN7, 26S proteasome re 90.9 0.5 1.7E-05 53.8 8.9 101 448-555 131-237 (429)
283 3mkq_B Coatomer subunit alpha; 90.7 3.5 0.00012 40.7 13.6 50 500-554 13-62 (177)
284 4fhn_B Nucleoporin NUP120; pro 90.5 1.6 5.4E-05 56.2 14.0 188 451-646 845-1051(1139)
285 1ya0_A SMG-7 transcript varian 90.4 1.3 4.5E-05 51.3 11.9 80 449-538 153-232 (497)
286 1zbp_A Hypothetical protein VP 90.3 2.5 8.5E-05 44.6 12.6 111 587-701 5-134 (273)
287 4b4t_S RPN3, 26S proteasome re 90.2 5.3 0.00018 46.1 16.4 149 499-701 143-304 (523)
288 2wpv_A GET4, UPF0363 protein Y 89.9 24 0.00082 38.0 26.0 28 614-641 132-159 (312)
289 3lpz_A GET4 (YOR164C homolog); 89.8 25 0.00087 38.2 27.9 27 614-640 134-160 (336)
290 1ya0_A SMG-7 transcript varian 88.8 1.4 4.8E-05 51.0 10.4 79 723-805 154-232 (497)
291 4b4t_R RPN7, 26S proteasome re 88.7 2.3 7.9E-05 48.3 12.1 104 669-789 133-238 (429)
292 4b4t_S RPN3, 26S proteasome re 87.3 16 0.00055 42.1 17.8 112 445-560 178-304 (523)
293 4fhn_B Nucleoporin NUP120; pro 85.6 4.9 0.00017 51.6 13.9 169 619-810 815-988 (1139)
294 3spa_A Mtrpol, DNA-directed RN 84.6 5.9 0.0002 49.4 13.0 99 723-822 129-230 (1134)
295 1qsa_A Protein (soluble lytic 84.3 73 0.0025 37.6 26.6 163 622-822 220-410 (618)
296 3spa_A Mtrpol, DNA-directed RN 79.3 14 0.00048 46.2 13.6 98 446-555 125-230 (1134)
297 3lpz_A GET4 (YOR164C homolog); 77.2 86 0.003 34.0 23.9 34 790-823 183-217 (336)
298 2wpv_A GET4, UPF0363 protein Y 75.3 93 0.0032 33.4 24.3 122 684-824 92-219 (312)
299 3mkr_B Coatomer subunit alpha; 63.3 1.6E+02 0.0056 31.5 16.5 102 724-825 105-230 (320)
300 3t5v_B Nuclear mRNA export pro 61.3 1.7E+02 0.0057 33.1 16.5 98 462-559 140-254 (455)
301 4gq2_M Nucleoporin NUP120; bet 60.7 61 0.0021 40.5 14.0 53 622-695 816-868 (950)
302 4ady_A RPN2, 26S proteasome re 58.5 2.8E+02 0.0097 34.3 18.8 273 489-820 371-656 (963)
303 2w2u_A Hypothetical P60 katani 58.3 11 0.00038 32.2 4.6 36 442-477 13-48 (83)
304 2qx5_A Nucleoporin NIC96; mRNA 57.9 1.1E+02 0.0036 36.6 14.6 30 796-826 539-570 (661)
305 2br9_A 14-3-3E, 14-3-3 protein 57.4 1.7E+02 0.0059 29.9 21.2 50 738-787 147-201 (234)
306 1o9d_A 14-3-3-like protein C; 57.2 1.9E+02 0.0063 30.1 20.8 50 738-787 152-206 (260)
307 3uzd_A 14-3-3 protein gamma; s 57.1 1.8E+02 0.0062 30.0 20.5 32 528-559 6-37 (248)
308 2v6y_A AAA family ATPase, P60 55.0 18 0.0006 30.9 5.4 33 445-477 8-40 (83)
309 3ubw_A 14-3-3E, 14-3-3 protein 54.9 2E+02 0.0069 29.9 21.8 33 527-559 32-64 (261)
310 2qx5_A Nucleoporin NIC96; mRNA 52.2 3.3E+02 0.011 32.2 17.6 76 455-552 301-382 (661)
311 3mv2_A Coatomer subunit alpha; 51.7 1.9E+02 0.0066 31.0 13.9 101 725-825 118-239 (325)
312 2v6x_A Vacuolar protein sortin 51.1 24 0.00081 30.1 5.6 36 442-477 7-42 (85)
313 3mkr_B Coatomer subunit alpha; 51.0 2.6E+02 0.0088 30.0 18.9 121 667-791 102-230 (320)
314 4gq2_M Nucleoporin NUP120; bet 49.1 1.1E+02 0.0036 38.3 13.4 52 498-553 816-867 (950)
315 3iqu_A 14-3-3 protein sigma; s 48.7 2.4E+02 0.0081 28.9 16.1 33 527-559 9-41 (236)
316 2cpt_A SKD1 protein, vacuolar 47.0 29 0.00099 31.6 5.8 35 443-477 13-47 (117)
317 2crb_A Nuclear receptor bindin 46.4 40 0.0014 29.3 6.0 34 443-476 10-43 (97)
318 3ax2_A Mitochondrial import re 43.9 26 0.0009 29.1 4.5 32 451-482 20-51 (73)
319 4a5x_A MITD1, MIT domain-conta 42.1 36 0.0012 29.2 5.3 32 446-477 14-45 (86)
320 3re2_A Predicted protein; meni 41.6 96 0.0033 33.7 9.4 53 635-699 276-328 (472)
321 2npm_A 14-3-3 domain containin 41.6 3.2E+02 0.011 28.3 21.9 50 738-787 173-226 (260)
322 3r9m_A BRO1 domain-containing 41.2 3.9E+02 0.013 29.2 16.8 31 719-749 251-281 (376)
323 1wfd_A Hypothetical protein 15 40.4 38 0.0013 29.4 5.3 34 443-476 10-43 (93)
324 1wfd_A Hypothetical protein 15 39.7 1.2E+02 0.0043 26.1 8.5 17 538-554 27-43 (93)
325 2w2u_A Hypothetical P60 katani 39.5 1E+02 0.0034 26.1 7.7 28 799-826 25-52 (83)
326 3t5x_A PCI domain-containing p 38.7 75 0.0026 31.7 8.0 60 445-509 11-70 (203)
327 2v6y_A AAA family ATPase, P60 38.3 1.2E+02 0.004 25.6 7.9 27 800-826 18-44 (83)
328 3efz_A 14-3-3 protein; 14-3-3, 37.7 3.7E+02 0.013 28.0 17.3 50 739-788 170-226 (268)
329 2crb_A Nuclear receptor bindin 36.7 42 0.0014 29.1 4.7 29 491-519 14-42 (97)
330 2vkj_A TM1634; membrane protei 36.1 1.1E+02 0.0039 26.2 7.1 36 445-480 50-85 (106)
331 2ijq_A Hypothetical protein; s 32.0 1.6E+02 0.0056 28.2 8.7 62 763-824 36-106 (161)
332 1wy6_A Hypothetical protein ST 30.9 3.5E+02 0.012 25.6 13.0 67 579-648 90-157 (172)
333 2ijq_A Hypothetical protein; s 30.7 2.4E+02 0.0083 27.0 9.6 64 725-788 36-104 (161)
334 1om2_A Protein (mitochondrial 30.0 42 0.0014 29.4 3.7 31 451-481 23-53 (95)
335 3t5x_A PCI domain-containing p 29.9 81 0.0028 31.5 6.5 35 491-525 13-47 (203)
336 3t5v_B Nuclear mRNA export pro 29.6 1.7E+02 0.0057 33.1 9.7 97 670-776 179-282 (455)
337 4a5x_A MITD1, MIT domain-conta 29.6 1.3E+02 0.0043 25.7 6.7 27 798-824 21-47 (86)
338 2v6x_A Vacuolar protein sortin 27.7 1.7E+02 0.0057 24.6 7.2 24 802-825 22-45 (85)
339 4gq4_A Menin; tumor suppressor 26.0 2.6E+02 0.0088 31.1 9.7 73 680-787 258-331 (489)
340 2cpt_A SKD1 protein, vacuolar 25.6 94 0.0032 28.2 5.5 20 729-748 26-45 (117)
341 3u84_A Menin; MLL, JUND, ledgf 25.3 7.3E+02 0.025 27.5 14.3 170 576-777 254-425 (550)
342 3rau_A Tyrosine-protein phosph 25.2 4.7E+02 0.016 28.3 12.2 32 616-647 252-283 (363)
343 2rpa_A Katanin P60 ATPase-cont 24.2 53 0.0018 27.6 3.2 27 451-477 15-41 (78)
344 3lvg_A Clathrin heavy chain 1; 23.8 0.013 4.6E-07 66.4 -24.6 212 480-771 52-275 (624)
345 2cfu_A SDSA1; SDS-hydrolase, l 23.5 95 0.0033 37.0 6.6 51 493-543 450-500 (658)
346 2wvi_A Mitotic checkpoint seri 22.9 5.1E+02 0.017 24.8 10.8 50 739-790 78-127 (164)
347 2cfu_A SDSA1; SDS-hydrolase, l 22.7 99 0.0034 36.8 6.5 50 448-507 449-498 (658)
348 4aez_C MAD3, mitotic spindle c 22.1 2.7E+02 0.0093 28.2 8.6 62 755-822 116-179 (223)
349 3re2_A Predicted protein; meni 21.9 4.7E+02 0.016 28.5 10.5 86 445-555 232-325 (472)
350 3myv_A SUSD superfamily protei 21.5 1.8E+02 0.0062 32.6 8.2 50 506-555 169-219 (454)
351 3snx_A SUSD homolog, putative 21.4 1.8E+02 0.006 32.9 8.0 34 522-555 187-220 (460)
352 2wvi_A Mitotic checkpoint seri 21.2 3.7E+02 0.013 25.8 9.0 62 755-822 62-125 (164)
353 2vkj_A TM1634; membrane protei 21.0 3.8E+02 0.013 23.0 7.7 50 719-770 51-101 (106)
354 3ubw_A 14-3-3E, 14-3-3 protein 20.7 7.1E+02 0.024 25.7 19.4 44 493-536 32-76 (261)
355 3mv2_A Coatomer subunit alpha; 20.6 7.9E+02 0.027 26.2 18.1 117 669-791 116-239 (325)
356 4b4t_O 26S proteasome regulato 20.5 8.4E+02 0.029 26.5 14.2 117 622-750 82-198 (393)
No 1
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=8.1e-41 Score=385.91 Aligned_cols=424 Identities=20% Similarity=0.254 Sum_probs=363.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....|..+..+..+|..++..|+|++|+.+|++++..+|.+. .+|+.+|.+|+.+|++++|+..|+++++
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY----------IAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
++|++..++..+|.+|..+|++++|+..|++++.+.|.+... ......+........++..+..++..|+++ +
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 161 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE----KEAQSQLIKSDEMQRLRSQALNAFGSGDYT---A 161 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCHH---H
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHcCCHH---H
Confidence 999999999999999999999999999999999999875310 123333444445566778888999999999 8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
|+..|.+++...|.++.++..+|.+|...|++++|+..|++++...|.+.. +|..+|.+|...
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~ 224 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE-----------------AFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH-----------------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999887644 788999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
|++++|+..|++++.+.|...... ........+..+..+|.++...|++++|+.+|++++.+.|.+......
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCF--------AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHH--------HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHH--------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 999999999999999998875522 112223344556678999999999999999999999999765545577
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcc
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRT 840 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~ 840 (954)
++..+|.++..+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++++. |++.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------p~~~ 363 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-------------ENDQ 363 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------------SSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------cchH
Confidence 999999999999999999999999999999999999999999999999999999999999994 5555
Q ss_pred hhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-------HHHHHHHHHH
Q 002199 841 ISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-------QEQEIRKATK 913 (954)
Q Consensus 841 ~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-------~~e~~~~~~~ 913 (954)
..+..+..++..++.. ...++|.+||+.+.++..+++++|+++++++|||+..... ...++.++++
T Consensus 364 ~~~~~l~~~~~~~~~~-------~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~ 436 (450)
T 2y4t_A 364 QIREGLEKAQRLLKQS-------QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436 (450)
T ss_dssp HHHHHHHHHHHHHHHH-------HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc-------cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 5566777766555332 2568999999999999999999999999999999988654 4456778899
Q ss_pred HCCCCCcccccccc
Q 002199 914 ESPQNSHYGRSSDA 927 (954)
Q Consensus 914 ~l~~~~~~r~~yD~ 927 (954)
+|++ +++|+.||.
T Consensus 437 ~L~d-~~~r~~yd~ 449 (450)
T 2y4t_A 437 VLSD-PEMRKKFDD 449 (450)
T ss_dssp HSSG-GGGC-----
T ss_pred HhCC-HHHHHhccC
Confidence 9997 999999996
No 2
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=9e-33 Score=306.19 Aligned_cols=350 Identities=18% Similarity=0.235 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.++.+..+|..++..|+|++|+.+|+++++.+|.+. .+++.+|.+++.+|++++|+..|+++++++|++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY----------IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 467899999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhch---hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAA---AVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P---~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
.++..+|.++..+|++++|+..|++++.+.| .+. .+...+........++..+..+...++++ +|+.
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~A~~ 141 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK-------EAESQLVKADEMQRLRSQALDAFDGADYT---AAIT 141 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH-------HHHHHHHHHHHHHHHHHHHHHHHHccCHH---HHHH
Confidence 9999999999999999999999999999998 542 23334444445566778889999999999 8999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.+.+++...|.++.++..+|.++..+|++++|+..+++++...|.+.. .+..+|.+|...|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 142 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE-----------------AFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH-----------------HHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999987744 688999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
++|+..|++++.+.|...... ........+.....+|.+++..|++++|+..|++++...|........++.
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 276 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQDHKRCF--------AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH--------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHH--------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 999999999999999876522 222333345566678999999999999999999999999776555567788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhh
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISS 843 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~ 843 (954)
.+|.++..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+.+|++++++. |++..++
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-------------p~~~~~~ 343 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-------------ENDQQIR 343 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------TTCHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------CCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999995 4455555
Q ss_pred hhhHHHHHhhh
Q 002199 844 RDLRQACRHLS 854 (954)
Q Consensus 844 ~~L~~a~~~L~ 854 (954)
..+..++..++
T Consensus 344 ~~l~~~~~~~~ 354 (359)
T 3ieg_A 344 EGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777766553
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-32 Score=311.12 Aligned_cols=325 Identities=16% Similarity=0.177 Sum_probs=263.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|..+..+..+|..++..|++++|+..+++++..+|.+. .+|..+|.+|...|++++|+..|++++.++|
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 98 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA----------EAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc
Confidence 455667788888888888888888888888888888876 7888888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
++..++..+|.++...|++++|+..|+++++++|+. ...+..++..+...|+++ +|+.
T Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~l~~~~~~~g~~~---~A~~ 156 (388)
T 1w3b_A 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-------------------YCVRSDLGNLLKALGRLE---EAKA 156 (388)
T ss_dssp TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-------------------THHHHHHHHHHHTTSCHH---HHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHccCHH---HHHH
Confidence 888888888888888888888888888888888865 344566677777778888 7778
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.|.+++...|....++..+|.++...|++++|+..|++++.+.|.... +|..+|.++...|++
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD-----------------AYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHTTTCT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHcCCH
Confidence 888888888888888888888888888888888888888888876643 677788888888888
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
++|+..|++++.+.|.+.. .+..+|.++...|++++|+..|++++.++ |..+.++.
T Consensus 220 ~~A~~~~~~al~~~p~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~ 275 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAV--------------------VHGNLACVYYEQGLIDLAIDTYRRAIELQ----PHFPDAYC 275 (388)
T ss_dssp THHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTC----SSCHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHH
Confidence 8888888888888776533 45667888888888888888888888887 66677888
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhh
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISS 843 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~ 843 (954)
++|.++...|++++|+..|+++++++|.++.++..+|.++...|++++|+..|++++++. |+....+
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~ 342 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------------PEFAAAH 342 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-------------TTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------CCcHHHH
Confidence 888888888888888888888888888888888888888888888888888888888874 4444444
Q ss_pred hhhHHHHHhhh
Q 002199 844 RDLRQACRHLS 854 (954)
Q Consensus 844 ~~L~~a~~~L~ 854 (954)
..++.++..++
T Consensus 343 ~~l~~~~~~~g 353 (388)
T 1w3b_A 343 SNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHcC
Confidence 55555544443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-32 Score=312.69 Aligned_cols=323 Identities=18% Similarity=0.184 Sum_probs=298.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|..+.+|..+|..++..|++++|+.+|++++.++|++. .+|.++|.++...|++++|+..|+++++++
T Consensus 62 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI----------DGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3466788999999999999999999999999999999986 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|+...++..+|.++..+|++++|+..|++++...|.+ ...+..++..+...|+++ +|+
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~l~~~~~~~g~~~---~A~ 189 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------------------AVAWSNLGCVFNAQGEIW---LAI 189 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHTTTCHH---HHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCHH---HHH
Confidence 9999999999999999999999999999999999975 456778888899999998 899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
..|++++.++|..+.++..+|.++...|++++|+..|++++.+.|.+.. ++..+|.+|...|+
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-----------------VHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH-----------------HHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999997744 67889999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF 762 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~ 762 (954)
+++|+..|++++.+.|.... .+..+|.++...|++++|+.+|++++.+. |.+..++
T Consensus 253 ~~~A~~~~~~al~~~p~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~ 308 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPD--------------------AYCNLANALKEKGSVAEAEDCYNTALRLC----PTHADSL 308 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHH--------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHH
Confidence 99999999999999887643 46678999999999999999999999998 7788999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchh
Q 002199 763 CNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTIS 842 (954)
Q Consensus 763 ~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~ 842 (954)
.++|.++...|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++++. |....+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------------p~~~~a 375 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-------------PTFADA 375 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-------------TTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999994 455555
Q ss_pred hhhhHHHHH
Q 002199 843 SRDLRQACR 851 (954)
Q Consensus 843 ~~~L~~a~~ 851 (954)
+..++.++.
T Consensus 376 ~~~lg~~~~ 384 (388)
T 1w3b_A 376 YSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHHHHH
Confidence 556665543
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.1e-30 Score=303.02 Aligned_cols=326 Identities=14% Similarity=0.104 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+.++.|+.+|..++..|+|++|+.+|++++..+|+ . .+|..+|.+|+.+|++++|+..|+++++++|+
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 71 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-P----------VFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-H----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-H----------HHHHhHHHHHHHHhhHHHHHHHHHHHhccChH
Confidence 467899999999999999999999999999999994 4 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH---H-------------------------
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK---A------------------------- 576 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~---~------------------------- 576 (954)
+..+++.+|.+|..+|++++|+..|++++.+.|.................. .
T Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (514)
T 2gw1_A 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH
Confidence 999999999999999999999999999999988543222111111110000 0
Q ss_pred --------------------------------HhHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHh-----c--C--
Q 002199 577 --------------------------------QKVTEYINCSGKLLE---QKTSEAASSALERINEALS-----I--S-- 612 (954)
Q Consensus 577 --------------------------------~~~~~~l~~a~~ll~---~g~~~~a~eAL~~l~kaL~-----~--~-- 612 (954)
.....++..+..++. .++++ +|+..+.+++. + .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD---KADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHH---HHHHHHHHHHHHHHHHTTTSTT
T ss_pred HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHH---HHHHHHHHHHHHhhhhhccCcc
Confidence 003344555555555 56666 78888888887 5 3
Q ss_pred -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 613 -----SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 613 -----P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
|..+.++..+|.++...|++++|+..|++++...|. .. .+..+|.+|...|++++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~-----------------~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VN-----------------SYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HH-----------------HHHHHHHHHHTSSCCTTGG
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HH-----------------HHHHHHHHHHHCCCHHHHH
Confidence 445678888999999999999999999999988875 32 6777888888888888888
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
..|++++.+.|.+.. .+..+|.++...|++++|+.+|++++.+. |....++..+|.
T Consensus 291 ~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~ 346 (514)
T 2gw1_A 291 NYFDKALKLDSNNSS--------------------VYYHRGQMNFILQNYDQAGKDFDKAKELD----PENIFPYIQLAC 346 (514)
T ss_dssp GHHHHHHTTCTTCTH--------------------HHHHHHHHHHHTTCTTHHHHHHHHHHHTC----SSCSHHHHHHHH
T ss_pred HHHHHHhhcCcCCHH--------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhC----hhhHHHHHHHHH
Confidence 888888888876643 45567888888888888888888888877 455667888888
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
++...|++++|+..|++++.+.|.++.+++.+|.++..+|++++|+..|++++++.|..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 88888888888888888888888888888888888888888888888888888887775
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=7.1e-30 Score=300.93 Aligned_cols=333 Identities=17% Similarity=0.144 Sum_probs=267.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 439 SPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA 518 (954)
Q Consensus 439 ~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA 518 (954)
......+..++.|..+|..++..|+|++|+.+|++++..+|.+. .+|.++|.+|+.+|++++|+..|+++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----------VFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455677899999999999999999999999999999999997 99999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhH-------HHHHHHHHHHHHHHhH------------
Q 002199 519 ATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDR-------RITIEAADGLQKAQKV------------ 579 (954)
Q Consensus 519 Lel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~-------~~~~ea~~~l~~~~~~------------ 579 (954)
++++|++..+++.+|.++..+|++++|+..|+ ++.+.|+..... .....+...+......
T Consensus 86 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 86 LEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred HhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 99999999999999999999999999999996 888877643211 0111111111111000
Q ss_pred ----------------------------HHHHHHHHHHH----------HhcChHHHHHHHHHHHHHHhcCCCCHH----
Q 002199 580 ----------------------------TEYINCSGKLL----------EQKTSEAASSALERINEALSISSCSEK---- 617 (954)
Q Consensus 580 ----------------------------~~~l~~a~~ll----------~~g~~~~a~eAL~~l~kaL~~~P~~~~---- 617 (954)
...+..+...+ ..++++ +|+..|.+++...|.++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~---~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT---KSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHH---HHHHHHHHHHC--CCCHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHH---HHHHHHHHHHHHCCCcchhhHH
Confidence 00011111111 122344 889999999999999855
Q ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 618 ---LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 618 ---~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
++..+|.++...|++++|+..|++++.+.|. .. .+..+|.+|...|++++|+.+|++++
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PN-----------------SYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HH-----------------HHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-ch-----------------HHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 5777888999999999999999999999886 32 67789999999999999999999999
Q ss_pred hhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC
Q 002199 695 QVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 695 ~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
.+.|.+.. .+..+|.++...|++++|+..|++++.+. |....++..+|.++..+|+
T Consensus 304 ~~~~~~~~--------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 304 DLNPEYPP--------------------TYYHRGQMYFILQDYKNAKEDFQKAQSLN----PENVYPYIQLACLLYKQGK 359 (537)
T ss_dssp HHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCSHHHHHHHHHHHHTTC
T ss_pred ccCCCCHH--------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence 99887643 56678999999999999999999999998 6667889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 775 IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+++|+..|+++++++|.++.++..+|.++..+|++++|+..|++++++.|...
T Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 99999999999999999999999999999999999999999999999988753
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=3e-28 Score=280.64 Aligned_cols=344 Identities=12% Similarity=0.057 Sum_probs=287.6
Q ss_pred hhcccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH
Q 002199 422 KVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT 501 (954)
Q Consensus 422 k~~~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~ 501 (954)
..+...+....+.... ...|..+..|..+|..++..|++++|+.+|+++++.+|.+. .++..+|.+
T Consensus 38 ~~g~~~~A~~~~~~~l----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~ 103 (450)
T 2y4t_A 38 AAGQLADALSQFHAAV----DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT----------AARLQRGHL 103 (450)
T ss_dssp HTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH----HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----------HHHHHHHHH
Confidence 3344445544444422 23455688999999999999999999999999999999986 899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHH
Q 002199 502 RISLGRMREALEDCMMAATVDPNFL---KVYMRA------------AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT 566 (954)
Q Consensus 502 y~~lg~~eeAl~~~~kALel~P~~~---~a~~~L------------A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~ 566 (954)
|..+|++++|+..|+++++++|.+. .++..+ |.++...|++++|+..|++++.+.|.+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------- 176 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD------- 176 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 9999999999999999999999988 776555 777999999999999999999998875
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 567 IEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 567 ~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
...+..++..+...|+++ +|+..|.+++...|.++.++..+|.+|...|++++|+..|++++.+.
T Consensus 177 ------------~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 177 ------------AELRELRAECFIKEGEPR---KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp ------------HHHHHHHHHHHHHTTCGG---GGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------------hHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455778889999999999 78999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
|.+....... .....+..+..+|.++...|++++|+.+|++++.+.|.+... ....+..
T Consensus 242 p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----------------~~~~~~~ 300 (450)
T 2y4t_A 242 QDHKRCFAHY-----KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY----------------TVRSKER 300 (450)
T ss_dssp TTCHHHHHHH-----HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH----------------HHHHHHH
T ss_pred CChHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHH----------------HHHHHHH
Confidence 8764421100 001111223455999999999999999999999999875431 1235677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE-- 804 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~-- 804 (954)
+|.++...|++++|+.+|++++.+. |....+|..+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQME----PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 8999999999999999999999998 7788999999999999999999999999999999999999999996543
Q ss_pred ----------Hhc-----CHHHHHHHHHH-HHHHhhhh
Q 002199 805 ----------MIR-----DYTQAASDLQR-LVSILENQ 826 (954)
Q Consensus 805 ----------~lg-----~~eeAi~~~ek-AL~l~p~~ 826 (954)
.+| +.+++.+.|++ +++..|+.
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 344 55677788876 77776553
No 8
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=266.86 Aligned_cols=302 Identities=14% Similarity=0.095 Sum_probs=269.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+.....+..+|..++..|+|++|+.+|++++..+|.+. .++..++.+++.+|++++|+..++++++.+|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA----------SCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----------TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh----------hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence 34456788999999999999999999999999999997 78889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLG-EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG-~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
++.+++.+|.++...| ++++|+.+|++++.++|.+ ...+..++..+...|+++ +|+.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------------~~~~~~l~~~~~~~~~~~---~A~~ 146 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-------------------GPAWIAYGHSFAVESEHD---QAMA 146 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-------------------THHHHHHHHHHHHHTCHH---HHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-------------------HHHHHHHHHHHHHccCHH---HHHH
Confidence 9999999999999999 9999999999999999875 445778899999999999 8999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.+.+++...|.....+..+|.++...|++++|+..+++++...|.+.. .+..+|.+|...|++
T Consensus 147 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-----------------VMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-----------------HHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHcccH
Confidence 999999999999999999999999999999999999999999987743 678899999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
++|+.++++++.+.+....... .......+..+|.++...|++++|+.+|++++.+. |....++.
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~ 274 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVT-----------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI----PQNASTYS 274 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCT-----------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccc-----------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC----ccchHHHH
Confidence 9999999999998643221100 00012356779999999999999999999999998 67788999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhcCHH
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH-EMIRDYT 810 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly-~~lg~~e 810 (954)
.+|.++..+|++++|+.+|+++++++|+++.++..++.++ ..+|+.+
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999999999999998 5666643
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.8e-27 Score=281.97 Aligned_cols=332 Identities=13% Similarity=0.060 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH--------------------------
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR-------------------------- 498 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l-------------------------- 498 (954)
+..+..|..+|..|.+.|++++|+.+|+++++.+|.+. .++..+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----------~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY----------EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh----------HHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 45788999999999999999999999999999999875 333333
Q ss_pred ------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHH
Q 002199 499 ------------AATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT 566 (954)
Q Consensus 499 ------------A~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~ 566 (954)
+.+|...|++++|+..|+++++. |.+..++..+|.+|...|++++|+..|++++...|.+.......
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 345 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHH
Confidence 33444567777777777777776 56677777777777777777777777777777776543322211
Q ss_pred HHH----------HHHHHHHH-----hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 002199 567 IEA----------ADGLQKAQ-----KVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRK 631 (954)
Q Consensus 567 ~ea----------~~~l~~~~-----~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~ 631 (954)
... ...+.... ....+..++..+...|+++ +|+..|.+++.+.|.+..++..++.+|...|+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS---EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 111 11111111 1445667778888888888 78888888888899999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 002199 632 YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESS 711 (954)
Q Consensus 632 ~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~ 711 (954)
+++|+..|++++...|.+.. .|..+|.+|...|++++|+.+|++++.+.|.+..
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------- 476 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHL-----------------PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL--------- 476 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH---------
T ss_pred HHHHHHHHHHHHHhCccchH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------
Confidence 99999999999888876643 6778899999999999999999999988876532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--Cchh-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE--SRPF-AAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 712 ~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~--~~p~-~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
.+..+|.++...|++++|+.+|++++.+.|. ..|. ...+|..+|.+|...|++++|+..|++++++
T Consensus 477 -----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 477 -----------LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999998542 1244 3889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 789 DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 789 dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+|+++.++..+|.+|...|++++|+..|++++++.|++.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999999999999999999955543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=9.7e-28 Score=282.65 Aligned_cols=335 Identities=14% Similarity=0.121 Sum_probs=253.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|..+..|..+|.+++..|+|++|+..|++++.++|.+. .+++.+|.++..+|++++|+..|+ ++.++|
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~ 123 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS----------KALLRRASANESLGNFTDAMFDLS-VLSLNG 123 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHH-HHC---
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH----------HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCC
Confidence 456678999999999999999999999999999999987 899999999999999999988874 665555
Q ss_pred CcHHHH--------------------------------------------------------------------HHH---
Q 002199 524 NFLKVY--------------------------------------------------------------------MRA--- 532 (954)
Q Consensus 524 ~~~~a~--------------------------------------------------------------------~~L--- 532 (954)
+....+ ..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 203 (537)
T 3fp2_A 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHH
Confidence 432211 000
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHH-----------------HHHHHHHHHHh----HHHHHHHH
Q 002199 533 -----AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI-----------------EAADGLQKAQK----VTEYINCS 586 (954)
Q Consensus 533 -----A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~-----------------ea~~~l~~~~~----~~~~l~~a 586 (954)
+......|++++|+..|+++++..|.+........ ++...+.++.. ...++.++
T Consensus 204 ~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 283 (537)
T 3fp2_A 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLA 283 (537)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 11112223555555566665555554322111111 11111111110 24456667
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHH
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLAR 666 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~ 666 (954)
..+...++++ +|+..+.+++...|.++.++..+|.++...|++++|+..|++++.+.|.+..
T Consensus 284 ~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------- 345 (537)
T 3fp2_A 284 LTLADKENSQ---EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY--------------- 345 (537)
T ss_dssp HHTCCSSCCH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH---------------
T ss_pred HHHHHhcCHH---HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---------------
Confidence 7777788888 7888888888889988999999999999999999999999999988887643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 667 LWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTV 746 (954)
Q Consensus 667 l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~k 746 (954)
++..+|.+|...|++++|+.+|++++.+.|.+.. .+..+|.++...|++++|+.+|++
T Consensus 346 --~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 346 --PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE--------------------VPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH--------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6778899999999999999999999988887644 456689999999999999999999
Q ss_pred HHhhccCCch--hhHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 747 ALSTNIESRP--FAAICFCNRAAALQAL----------GQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 747 AL~l~~~~~p--~~a~~~~~lA~~y~~l----------g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
++.+.|.... .....++.+|.++..+ |++++|+..|+++++++|+++.+++.+|.+|..+|++++|+.
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 9999854332 2334577889999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHH
Q 002199 815 DLQRLVSILENQSAE 829 (954)
Q Consensus 815 ~~ekAL~l~p~~~~~ 829 (954)
+|++++++.|...+.
T Consensus 484 ~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 484 LFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHC--CHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 999999998766543
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=4.9e-27 Score=259.96 Aligned_cols=308 Identities=13% Similarity=0.058 Sum_probs=271.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|.....+..+|..++..|++++|+..|+++++..|.+. .++..+|.++..+|++++|+..|+++++++|
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----------AARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----------hHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 455678999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred ---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002199 524 ---NFLKVYMRA------------AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGK 588 (954)
Q Consensus 524 ---~~~~a~~~L------------A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ 588 (954)
++..++..+ |.++...|++++|+..|++++...|.+ ...+..++..
T Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 163 (359)
T 3ieg_A 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-------------------AELRELRAEC 163 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------------------hHHHHHHHHH
Confidence 888888877 799999999999999999999999875 3457788899
Q ss_pred HHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHH
Q 002199 589 LLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLW 668 (954)
Q Consensus 589 ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~ 668 (954)
+...|+++ +|+..+.+++...|.++.++..+|.++...|++++|+..++++++..|.+...... -.....+.
T Consensus 164 ~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 235 (359)
T 3ieg_A 164 FIKEGEPR---KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH-----YKQVKKLN 235 (359)
T ss_dssp HHHTTCHH---HHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-----HHHHHHHH
T ss_pred HHHCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH-----HHHHHHHH
Confidence 99999999 89999999999999999999999999999999999999999999999876442100 00011122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
....+|.++...|++++|+..|++++...|.+... ....+..+|.++...|++++|+.+|++++
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY----------------TVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH----------------HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34466999999999999999999999999876431 12346678999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
.++ |..+.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++
T Consensus 300 ~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 300 QME----PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 998 77889999999999999999999999999999999999999999988877654
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=261.23 Aligned_cols=297 Identities=11% Similarity=0.061 Sum_probs=261.3
Q ss_pred HHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 472 TQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHK 551 (954)
Q Consensus 472 ~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yek 551 (954)
...+...|.+. .++..+|.+++..|++++|+..|++++..+|.+..++..++.++..+|++++|+..+++
T Consensus 12 ~~~~~~~~~~~----------~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 81 (330)
T 3hym_B 12 PESVDGLQENL----------DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81 (330)
T ss_dssp --------CCC----------TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhhchhhH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34555566666 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 002199 552 LLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK-TSEAASSALERINEALSISSCSEKLLEMKADALYMLR 630 (954)
Q Consensus 552 aL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g-~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg 630 (954)
+++.+|.+ ...++.++..+...+ +++ +|+..+.+++...|..+.++..+|.++...|
T Consensus 82 ~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~---~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 82 LVDLYPSN-------------------PVSWFAVGCYYLMVGHKNE---HARRYLSKATTLEKTYGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHCTTS-------------------THHHHHHHHHHHHSCSCHH---HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT
T ss_pred HHHhCcCC-------------------HHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHhCCccHHHHHHHHHHHHHcc
Confidence 99999875 455788888999999 888 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 002199 631 KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILES 710 (954)
Q Consensus 631 ~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~ 710 (954)
++++|+..|+++++..|.+.. .+..+|.+|...|++++|+.+|++++.+.|.+..
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------- 194 (330)
T 3hym_B 140 EHDQAMAAYFTAAQLMKGCHL-----------------PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-------- 194 (330)
T ss_dssp CHHHHHHHHHHHHHHTTTCSH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH--------
T ss_pred CHHHHHHHHHHHHHhccccHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH--------
Confidence 999999999999999987643 5777999999999999999999999999887633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-----chhhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 711 SMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-----RPFAAICFCNRAAALQALGQIADAIADCSLA 785 (954)
Q Consensus 711 ~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-----~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekA 785 (954)
.+..+|.++...|++++|+.+|++++.+.+.. .+....++.++|.++..+|++++|+.+|+++
T Consensus 195 ------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 195 ------------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp ------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56678999999999999999999999986422 1556789999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHH
Q 002199 786 MALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQAC 850 (954)
Q Consensus 786 L~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~ 850 (954)
++++|+++.++..+|.+|..+|++++|+.+|++++++. |++...+..+..+.
T Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-------------RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-------------SCCHHHHHHHHHHH
T ss_pred HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-------------CCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999994 55555555666654
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=277.98 Aligned_cols=373 Identities=13% Similarity=-0.002 Sum_probs=277.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD-- 522 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~-- 522 (954)
+..+..+..+|.+++.+|+|++|+++|++|+++.+.... .......+.+|.++|.+|..+|++++|+.++++++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 344677889999999999999999999999987432210 00111235889999999999999999999999999873
Q ss_pred ------CCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 523 ------PNFLKVYMRAAKCHLVLG--EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 523 ------P~~~~a~~~LA~iy~~lG--~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
+..+.++..+|.++...| +|++|+.+|+++++++|++ ...+..++..++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-------------------~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-------------------PEFTSGLAIASYRLDN 187 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-------------------HHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhcC
Confidence 456889999998887765 6999999999999999986 2334455555444444
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 595 SEAASSALERINEALSISSCSEKLLEMKADALYML----RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 595 ~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l----g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
+..+.+|++.+++++.++|.++.++..+|..+..+ +++++|+.++++++.+.|.... ++
T Consensus 188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~-----------------~~ 250 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD-----------------VL 250 (472)
T ss_dssp SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH-----------------HH
T ss_pred chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH-----------------HH
Confidence 43334799999999999999999999888776654 6788999999999999987754 67
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|.+|...|++++|+..|++++++.|.+......+....... ............+......+.+++|+.+|++++.+
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK-VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-HHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 88999999999999999999999999998765332211100000 00000111112233333445688999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-HHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTK---AVSRRAAL-HEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~---al~~lA~l-y~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+ |....++..+|.+|..+|++++|+.+|+++|.++|+... +++.+|.+ +..+|++++|+.+|++++++.|+.
T Consensus 330 ~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 330 N----DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp C----TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred C----CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 8 777788999999999999999999999999999987654 45666655 457899999999999999998876
Q ss_pred HHHH-----------HhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 827 SAEK-----------AKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 827 ~~~~-----------~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
.... .....+|.+..++..|+.++..++..+++
T Consensus 406 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 406 REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5431 11134777777777888887777666655
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=4.1e-28 Score=271.44 Aligned_cols=302 Identities=13% Similarity=0.044 Sum_probs=259.5
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAED-FYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 456 ~~~~~~g~y~eAi~-~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
..+...|+|++|+. .|++++.+.|.++. ..+..++.+|.+++..|++++|+..|+++++++|.+..+++.+|.
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 106 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPL------RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 106 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTT------TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcc------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35667799999999 99999999987741 112568899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC
Q 002199 535 CHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC 614 (954)
Q Consensus 535 iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~ 614 (954)
+|..+|++++|+..|++++.++|.+ ...+..++..+...|+++ +|+..+.+++.+.|.
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELKPDN-------------------QTALMALAVSFTNESLQR---QACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHTSTT
T ss_pred HHHHCcCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCcC
Confidence 9999999999999999999999875 456788889999999999 899999999999998
Q ss_pred CHHHHH----------------HHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 615 SEKLLE----------------MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 615 ~~~~~~----------------~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
....+. .++.++ ..|++++|+..|++++.+.|.... ...+..+|.+|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~---------------~~~~~~l~~~~~ 228 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSID---------------PDVQCGLGVLFN 228 (368)
T ss_dssp TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC---------------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCccc---------------HHHHHHHHHHHH
Confidence 876664 456666 999999999999999999987310 126788999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhh
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFA 758 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~ 758 (954)
..|++++|+.+|++++.+.|.+.. .+..+|.++...|++++|+.+|++++.+. |..
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~ 284 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYL--------------------LWNKLGATLANGNQSEEAVAAYRRALELQ----PGY 284 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCc
Confidence 999999999999999999887633 56779999999999999999999999998 778
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMALDENY-----------TKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-----------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
..+++++|.+|..+|++++|+.+|++++.+.|++ ..+|..+|.+|..+|++++|...++++++.+++
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 8999999999999999999999999999999988 899999999999999999999999999988654
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.4e-27 Score=272.39 Aligned_cols=338 Identities=12% Similarity=0.034 Sum_probs=253.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN--- 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~--- 524 (954)
+..|..+|.+++..|+|++|+..|+++++.+|.+. .+|+.+|.+|..+|++++|+..|++++.+.|.
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS----------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 67899999999999999999999999999999987 89999999999999999999999999988863
Q ss_pred ----------------------------------------------------------------------------cHHH
Q 002199 525 ----------------------------------------------------------------------------FLKV 528 (954)
Q Consensus 525 ----------------------------------------------------------------------------~~~a 528 (954)
+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (514)
T 2gw1_A 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK 188 (514)
T ss_dssp GTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHH
Confidence 2777
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHh-----h--chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHH
Q 002199 529 YMRAAKCHLV---LGEIENAQHYYHKLLN-----S--AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598 (954)
Q Consensus 529 ~~~LA~iy~~---lG~~eeAl~~yekaL~-----l--~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a 598 (954)
++.+|.+++. .|++++|+..|++++. + .|.+... .......++.++..+...|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-- 254 (514)
T 2gw1_A 189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL------------KEKLAISLEHTGIFKFLKNDPL-- 254 (514)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH------------HHHHHHHHHHHHHHHHHSSCHH--
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc------------ChHHHHHHHHHHHHHHHCCCHH--
Confidence 8888988887 8999999999999999 5 4432100 0112344555566666666666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 599 SSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 599 ~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
+|+..+.+++...|. ..++..+|.++...|++++|+..+++++...|.+.. ++..+|.+|.
T Consensus 255 -~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~ 315 (514)
T 2gw1_A 255 -GAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS-----------------VYYHRGQMNF 315 (514)
T ss_dssp -HHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH-----------------HHHHHHHHHH
T ss_pred -HHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH-----------------HHHHHHHHHH
Confidence 566666666666666 666666666666666666666666666666655432 4555666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHH---------HHHHHHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEIL---------ESSMSLAGT-----VRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l---------~~~~~l~~~-----~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
..|++++|+..|++++.+.|.+......+. ......... ......+..+|.++...|++++|+.+|
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666666666555433221110 000000000 011245677899999999999999999
Q ss_pred HHHHhhccCCch--hhHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 745 TVALSTNIESRP--FAAICFCNRAAALQA---LGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 745 ~kAL~l~~~~~p--~~a~~~~~lA~~y~~---lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
++++.+.|.... ....+++.+|.++.. +|++++|+..|++++.++|+++.+++.+|.+|..+|++++|+..|+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999843321 114489999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHH
Q 002199 820 VSILENQSA 828 (954)
Q Consensus 820 L~l~p~~~~ 828 (954)
+++.|++.+
T Consensus 476 ~~~~~~~~~ 484 (514)
T 2gw1_A 476 ADLARTMEE 484 (514)
T ss_dssp HHHCSSHHH
T ss_pred HHhccccHH
Confidence 999766544
No 16
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.6e-26 Score=276.46 Aligned_cols=349 Identities=13% Similarity=0.054 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD------ 522 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~------ 522 (954)
..+..+|..++..|++++|+..|++++.. |.+. .++..++.+|...|++++|+..|++.....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 186 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSS----------ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCH----------HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccch----------hHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccc
Confidence 56788999999999999999999998766 4444 799999999999999999999998643322
Q ss_pred ----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHH---------------------------
Q 002199 523 ----------PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRI--------------------------- 565 (954)
Q Consensus 523 ----------P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~--------------------------- 565 (954)
|.+..+|+.+|.+|...|++++|+..|+++++.+|.+......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 187 NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp ----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 2348899999999999999999999999999999865322111
Q ss_pred ---------------------HHHHHHHHHHH----HhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002199 566 ---------------------TIEAADGLQKA----QKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLE 620 (954)
Q Consensus 566 ---------------------~~ea~~~l~~~----~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~ 620 (954)
..++...+.+. .....+..++..+...|+++ +|+..|++++...|.+..++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~ 343 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI---DVLAITTKILEIDPYNLDVYP 343 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTTCCTTHH
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHcCcccHHHHH
Confidence 11111111111 22455666777777788877 677778888888888877888
Q ss_pred HHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002199 621 MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSIS 700 (954)
Q Consensus 621 ~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~ 700 (954)
.++.++...|++++|+..+++++...|.+.. .|..+|.+|...|++++|+.+|++++.+.|.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 406 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAV-----------------TWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcccHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888888888877766533 67778999999999999999999998887765
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 701 DRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 701 ~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
. ..+..+|.+|...|++++|++.|++++... |.+..++..+|.+|...|++++|+.
T Consensus 407 ~--------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 407 G--------------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF----QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp H--------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred H--------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 3 356778999999999999999999999998 6678899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCc-chhhhhhHHHHHhhhhhhhh
Q 002199 781 DCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGR-TISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 781 ~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~-~~~~~~L~~a~~~L~~~e~a 859 (954)
.|++++++.|.++.+|..+|.+|...|++++|+..|++++++.|+. ...|.. ...+..+..++..++..+.+
T Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-------QSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-------CCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-------ccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999999999999999997642 123443 34556666666666555544
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=9.6e-27 Score=270.41 Aligned_cols=323 Identities=15% Similarity=0.035 Sum_probs=244.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG--RMREALEDCMMAAT 520 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg--~~eeAl~~~~kALe 520 (954)
..+..+..|..+|.+|+..|+|++|+.+|++++++.+.... ......+.++.++|.+++..| +|++|+.+|+++++
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS--PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc--ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999998654321 112223578888888887765 69999999999999
Q ss_pred cCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH----Hhc
Q 002199 521 VDPNFLKVYMRAAKCHLV---LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLL----EQK 593 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~---lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll----~~g 593 (954)
++|+++.++..+|.++.. .+++++|++.|+++++++|.+.. .+..++..+. ..+
T Consensus 167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~-------------------~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY-------------------LKVLLALKLHKMREEGE 227 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH-------------------HHHHHHHHHHHCC----
T ss_pred hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH-------------------HHHHHHHHHHHHHhhhh
Confidence 999999999999988654 57789999999999999997622 2233333332 334
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHH
Q 002199 594 TSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLI 673 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~L 673 (954)
+++ +|+..+++++.+.|..+.++..+|.+|...|++++|+..|+++++..|++.. ++..+
T Consensus 228 ~~~---~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l 287 (472)
T 4g1t_A 228 EEG---EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY-----------------LHCQI 287 (472)
T ss_dssp --C---HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHH
T ss_pred HHH---HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH-----------------HHHHH
Confidence 555 7889999999999999999999999999999999999999999999998754 55666
Q ss_pred HHHHHH-------------------cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 674 SKSYFC-------------------IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 674 g~~y~~-------------------lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
|.+|.. .+.+++|+..|++++.+.|.... .+..+|.++...
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------~~~~lg~~~~~~ 347 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR--------------------VCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC--------------------CHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh--------------------hhhhHHHHHHHh
Confidence 666643 23467899999999999887765 455689999999
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHh------------------------C
Q 002199 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAA-LQALGQIADAIADCSLAMAL------------------------D 789 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~-y~~lg~~eeAi~~~ekAL~l------------------------d 789 (954)
|++++|+.+|++++.+.+.. .....+++.+|.+ +..+|++++|+.+|++++.+ +
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTP-VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999987532 2334456677754 45789999999999998876 4
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 790 P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|.++.+|..+|.+|..+|++++|+++|++||++.|..+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 66678999999999999999999999999999966544
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.1e-26 Score=260.73 Aligned_cols=282 Identities=15% Similarity=0.045 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+..|+.+|..++..|+|++|+.+|++++..+|.+. .+|..+|.+|..+|++++|+..|+++++++|+
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 131 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDA----------EAWQFLGITQAENENEQAAIVALQRCLELQPN 131 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34566799999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
+..++..+|.+|..+|++++|+..|++++.+.|...... ..+
T Consensus 132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------------------~~~------------------- 173 (365)
T 4eqf_A 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV-------------------KNK------------------- 173 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------------------------------
T ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH-------------------hhh-------------------
Confidence 999999999999999999999999999999988642110 000
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh--hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK--NFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~--~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
.....++..+|.++...|++++|+.+|++++.+.|. +.. .+..+|.+|...|+
T Consensus 174 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 174 --------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD-----------------LQTGLGVLFHLSGE 228 (365)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHSCSSCCHH-----------------HHHHHHHHHHHHTC
T ss_pred --------ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH-----------------HHHHHHHHHHHCCC
Confidence 012334566788888888999999999999888876 322 57788889999999
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF 762 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~ 762 (954)
+++|+.+|++++.+.|.+.. .+..+|.++...|++++|+.+|++++.+. |..+.++
T Consensus 229 ~~~A~~~~~~al~~~p~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~ 284 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYS--------------------LWNRLGATLANGDRSEEAVEAYTRALEIQ----PGFIRSR 284 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHH
Confidence 99999999999888876533 56678999999999999999999999988 6778899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 763 CNRAAALQALGQIADAIADCSLAMALDEN------------YTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 763 ~~lA~~y~~lg~~eeAi~~~ekAL~ldP~------------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
+++|.+|..+|++++|+.+|++++++.|+ ...+|..++.++..+|+.+.|...+++.+..+
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 99999999999999999999999998877 36788999999999999999888877765553
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=7.8e-26 Score=247.62 Aligned_cols=286 Identities=16% Similarity=0.077 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
....++.+|..++..|+|++|+.+|+++++.+|.+. .++..+|.++...|++++|+..++++++++|.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE----------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH
Confidence 445688999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.++..+|.+|..+|++++|+..|++++...|........ .
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------------------~--------------------- 129 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV-------------------N--------------------- 129 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH-------------------H---------------------
Confidence 999999999999999999999999999998865221100 0
Q ss_pred HHHhcCCCCHHHHHHH-HH-HHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 607 EALSISSCSEKLLEMK-AD-ALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 607 kaL~~~P~~~~~~~~l-A~-~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
....|..... ..+ +. ++...|++++|+..+++++...|.+.. .+..+|.+|...|+++
T Consensus 130 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~ 189 (327)
T 3cv0_A 130 --LQADVDIDDL-NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ-----------------LHASLGVLYNLSNNYD 189 (327)
T ss_dssp -------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHH
T ss_pred --hHHHHHHHHH-HHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhccHH
Confidence 0001111111 234 34 588899999999999999999887643 6788999999999999
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHH
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCN 764 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~ 764 (954)
+|+.++++++.+.|.+.. .+..+|.++...|++++|+.+|++++.+. |....++..
T Consensus 190 ~A~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~ 245 (327)
T 3cv0_A 190 SAAANLRRAVELRPDDAQ--------------------LWNKLGATLANGNRPQEALDAYNRALDIN----PGYVRVMYN 245 (327)
T ss_dssp HHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHH
Confidence 999999999999886633 56678999999999999999999999998 777889999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 765 RAAALQALGQIADAIADCSLAMALDEN------------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 765 lA~~y~~lg~~eeAi~~~ekAL~ldP~------------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+|.++..+|++++|+..|++++.+.|. +..++..+|.++..+|++++|...+++++++.|+.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999 89999999999999999999999999999998765
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=1.2e-25 Score=251.38 Aligned_cols=288 Identities=15% Similarity=0.101 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..++.+|..++..|+|++|+.+|+++++.+|.+. .+|..+|.+|..+|++++|+..|+++++++|.+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 132 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----------EAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH
Confidence 356789999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.++..+|.+|..+|++++|+..|++++.+.|............... ............++..++++ +|+..+.
T Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~A~~~~~ 205 (368)
T 1fch_A 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG----AGLGPSKRILGSLLSDSLFL---EVKELFL 205 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------CTTHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhh----hcccHHHHHHHHHhhcccHH---HHHHHHH
Confidence 9999999999999999999999999999999764332111000000 00011111222233667777 8999999
Q ss_pred HHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 607 EALSISSC--SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 607 kaL~~~P~--~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
+++...|. .+.++..+|.++...|++++|+..|++++.+.|.+.. +|..+|.+|...|+++
T Consensus 206 ~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL-----------------LWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHH
T ss_pred HHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH-----------------HHHHHHHHHHHcCCHH
Confidence 99999999 8999999999999999999999999999999987643 6889999999999999
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-------chh
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-------RPF 757 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-------~p~ 757 (954)
+|+..|++++.+.|.... .+..+|.++...|++++|+.+|++++.+.|.. .+.
T Consensus 269 ~A~~~~~~al~~~~~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIR--------------------SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHhCCCcHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 999999999999886633 56779999999999999999999999998543 122
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
...+|..+|.+|..+|++++|...+.++++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 3889999999999999999999999887754
No 21
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=9.7e-25 Score=246.49 Aligned_cols=324 Identities=16% Similarity=0.153 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV----- 521 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel----- 521 (954)
.+..+..+|..++..|+|++|+.+|++++++.|.+. ..++.+|..+|.+|+.+|++++|+..+++++.+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999999999999998874 234578999999999999999999999999987
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC------
Q 002199 522 -DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT------ 594 (954)
Q Consensus 522 -~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~------ 594 (954)
.|....++..+|.+|..+|++++|+.+|++++.+.|..... ......+..++..+...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~~~~ 148 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------VGEARALYNLGNVYHAKGKSFGCPG 148 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------HHHHHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------cchHHHHHHHHHHHHHcCCcccccc
Confidence 35568899999999999999999999999999987753211 1124456777888888888
Q ss_pred --------------hHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 595 --------------SEAASSALERINEALSI------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 595 --------------~~~a~eAL~~l~kaL~~------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
++ +|+..+.+++.+ .|....++..+|.++..+|++++|+..+++++.+.+....
T Consensus 149 ~~~~~~~~~~a~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 222 (406)
T 3sf4_A 149 PQDVGEFPEEVRDALQ---AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--- 222 (406)
T ss_dssp ----CCCCHHHHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---
T ss_pred cchhhhhhhhHHHHHH---HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---
Confidence 77 677777777765 3344678999999999999999999999999999876422
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
......++..+|.+|...|++++|+.+|++++.+.+.... .......+..+|.++...
T Consensus 223 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~la~~~~~~ 280 (406)
T 3sf4_A 223 --------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--------------RAVEAQSCYSLGNTYTLL 280 (406)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHT
T ss_pred --------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC--------------chHHHHHHHHHHHHHHHh
Confidence 1223447889999999999999999999999987554322 222355677899999999
Q ss_pred CCHHHHHHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHh
Q 002199 735 GRYTEAVEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALD------ENYTKAVSRRAALHEMI 806 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld------P~~~~al~~lA~ly~~l 806 (954)
|++++|+.+|++++.+.+. ..+....++..+|.+|..+|++++|+.+|++++++. +....++..+|.++..+
T Consensus 281 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (406)
T 3sf4_A 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 9999999999999998642 235568899999999999999999999999999884 34478899999999999
Q ss_pred cCHHHHHHHHH
Q 002199 807 RDYTQAASDLQ 817 (954)
Q Consensus 807 g~~eeAi~~~e 817 (954)
|+...+...+.
T Consensus 361 g~~~~~~~~~~ 371 (406)
T 3sf4_A 361 GLSYSTNNSIM 371 (406)
T ss_dssp HTTSCC-----
T ss_pred hHhHHHHHHHH
Confidence 98755444433
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=9.5e-25 Score=244.95 Aligned_cols=295 Identities=13% Similarity=0.047 Sum_probs=227.3
Q ss_pred HHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002199 512 LEDCMMAATVDPNFL----KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSG 587 (954)
Q Consensus 512 l~~~~kALel~P~~~----~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~ 587 (954)
+..+.+++...+.++ ..++.+|.++...|++++|+..|++++.++|.+ ...++.++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~lg~ 107 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-------------------AEAWQFLGI 107 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-------------------HHHHHHHHH
Confidence 355566666655544 448999999999999999999999999998875 455788888
Q ss_pred HHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHH
Q 002199 588 KLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARL 667 (954)
Q Consensus 588 ~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l 667 (954)
.+...|+++ +|+..|.+++.++|.++.++..+|.+|..+|++++|+..|++++.+.|.+........ ...
T Consensus 108 ~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------~~~ 177 (365)
T 4eqf_A 108 TQAENENEQ---AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK-------GSP 177 (365)
T ss_dssp HHHHTTCHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------
T ss_pred HHHHCCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-------cch
Confidence 889999988 7888899999999999999999999999999999999999999999997654211100 001
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 668 WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 668 ~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
..+..+|.++...|++++|+.+|++++.+.|.... ...+..+|.++...|++++|+.+|+++
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID------------------PDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCC------------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC------------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 13446799999999999999999999999987322 125667899999999999999999999
Q ss_pred HhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 748 L~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+.+. |..+.+|.++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+.+|++++++.|+..
T Consensus 240 l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 240 LTVR----PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 9998 777899999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred HHHHhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 828 AEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 828 ~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
...... ........+..|+.+...++..+.
T Consensus 316 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 316 NQQQVP-HPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp ------------CHHHHHHHHHHHHHTCHHH
T ss_pred CCcccc-hhhhHHHHHHHHHHHHHHcCcHHH
Confidence 421000 011234556777777766655443
No 23
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=7e-24 Score=241.37 Aligned_cols=304 Identities=15% Similarity=0.162 Sum_probs=252.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV-- 521 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel-- 521 (954)
.+..+..+..+|..++..|+|++|+.+|++++++.|.+. ...+.+|..+|.+|+.+|++++|+..|++++++
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999874 233468999999999999999999999999998
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHH
Q 002199 522 ----DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEA 597 (954)
Q Consensus 522 ----~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~ 597 (954)
.|....++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------- 159 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL-------------------------------------- 159 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------
T ss_pred HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------------------------------------
Confidence 57778999999999999999999999999998864321
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRK-----------------YEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~-----------------~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
...|....++..+|.+|..+|+ +++|+.++++++.+.+....
T Consensus 160 ------------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~--------- 218 (411)
T 4a1s_A 160 ------------GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD--------- 218 (411)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred ------------hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC---------
Confidence 0011234567788888888888 99999999999887654321
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEA 740 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeA 740 (954)
......++..+|.+|...|++++|+.+|++++.+.+.... .......+..+|.++...|++++|
T Consensus 219 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 219 --RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD--------------RAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC--------------cHHHHHHHHHHHHHHHHCcCHHHH
Confidence 1223447889999999999999999999999887543221 122345678899999999999999
Q ss_pred HHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHH
Q 002199 741 VEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 741 i~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeA 812 (954)
+.+|++++.+.+. .......++..+|.+|..+|++++|+.+|++++.+.+. ...++..+|.+|..+|++++|
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999998742 22345789999999999999999999999999988543 356899999999999999999
Q ss_pred HHHHHHHHHHhhhhHH
Q 002199 813 ASDLQRLVSILENQSA 828 (954)
Q Consensus 813 i~~~ekAL~l~p~~~~ 828 (954)
+.+|++++++.+....
T Consensus 363 ~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 363 LKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999766543
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=4e-24 Score=243.96 Aligned_cols=257 Identities=12% Similarity=0.054 Sum_probs=230.9
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR-MREALEDCMMAAT 520 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~-~eeAl~~~~kALe 520 (954)
...|..+++|..+|..+...|++++|+.+|+++|.++|.+. .+|+++|.++..+|+ +++|+.+|+++|+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----------~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----------TVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----------HHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999997 999999999999997 9999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
++|++..+|+.+|.++..+|++++|+..|+++|.++|.+ ...|..++..+...|+++ +
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------------------~~a~~~lg~~~~~~g~~~---e 218 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------------------YHAWQHRQWVIQEFKLWD---N 218 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHHTCCT---T
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------------------HHHHHHHHHHHHHcCChH---H
Confidence 999999999999999999999999999999999999987 567889999999999999 8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHH-----HHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYM-LRKYEEA-----IQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~-lg~~eeA-----i~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg 674 (954)
|+..|+++|.++|.+..+|..+|.+|.. .|.+++| +.+|+++|.++|.+.. +|+.+|
T Consensus 219 Al~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~-----------------a~~~l~ 281 (382)
T 2h6f_A 219 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES-----------------AWNYLK 281 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH-----------------HHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH-----------------HHHHHH
Confidence 9999999999999999999999999999 5555888 5999999999998855 788999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHH
Q 002199 675 KSYFCIG--KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG---------RYTEAVEH 743 (954)
Q Consensus 675 ~~y~~lG--~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g---------~~eeAi~~ 743 (954)
.++...| ++++|+..++++ ..+|.+.. ++..+|.+|...+ .+++|+.+
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~--------------------al~~La~~~~~~~~~~~~~~~~~~~~A~~~ 340 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL-QPSHSSPY--------------------LIAFLVDIYEDMLENQCDNKEDILNKALEL 340 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH-TTTCCCHH--------------------HHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHccCccchHHHHHHHHHh-ccCCCCHH--------------------HHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999988 699999999887 77776543 4555788887763 35889999
Q ss_pred HHHH-HhhccCCchhhHHHHHHHHHHHHHh
Q 002199 744 YTVA-LSTNIESRPFAAICFCNRAAALQAL 772 (954)
Q Consensus 744 y~kA-L~l~~~~~p~~a~~~~~lA~~y~~l 772 (954)
|+++ ++++ |.....|..++.++..+
T Consensus 341 ~~~l~~~~D----P~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 341 CEILAKEKD----TIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----chhHHHHHHHHHHHHHH
Confidence 9998 8888 78888888888777654
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=1.2e-24 Score=248.32 Aligned_cols=251 Identities=9% Similarity=0.030 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhchhhhhhHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE-IENAQHYYHKLLNSAAAVCLDRRITIEAA 570 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~-~eeAl~~yekaL~l~P~~~~~~~~~~ea~ 570 (954)
..+|.++|.++..+|++++|+..|+++|+++|++..+|+.+|.++..+|+ +++|+.+|++++.++|.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----------- 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----------- 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----------
Confidence 48999999999999999999999999999999999999999999999997 999999999999999986
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 571 DGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 571 ~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
...|+.++..+...|+++ +|+..|++++.++|.+..+|..+|.++..+|++++|+..|+++|+++|.+.
T Consensus 166 --------~~a~~~~g~~~~~~g~~~---eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 166 --------YQVWHHRRVLVEWLRDPS---QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp --------HHHHHHHHHHHHHHTCCT---THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred --------HHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 567889999999999999 899999999999999999999999999999999999999999999999886
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFC-IGKLEVA-----LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHH 724 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~-lG~~eeA-----l~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~ 724 (954)
. +|+.+|.+|.. .|.+++| +.+|++++.++|.+.. +|
T Consensus 235 ~-----------------a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~--------------------a~ 277 (382)
T 2h6f_A 235 S-----------------VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES--------------------AW 277 (382)
T ss_dssp H-----------------HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH--------------------HH
T ss_pred H-----------------HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH--------------------HH
Confidence 5 78999999999 5555777 5889999999887744 56
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc---------CHHHHHHHHHHH-HHhCCCC
Q 002199 725 KSAGNEAFKSG--RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG---------QIADAIADCSLA-MALDENY 792 (954)
Q Consensus 725 ~~lG~~~~~~g--~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg---------~~eeAi~~~ekA-L~ldP~~ 792 (954)
..+|.++...| ++++|++.+.++ ..+ |....++..+|.+|..++ .+++|+.+|+++ ++++|..
T Consensus 278 ~~l~~ll~~~g~~~~~~a~~~~~~~-~~~----p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 278 NYLKGILQDRGLSKYPNLLNQLLDL-QPS----HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHHHHHTTTCGGGCHHHHHHHHHH-TTT----CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHccCccchHHHHHHHHHh-ccC----CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 77888888877 689999988887 655 778889999999998875 358999999999 8999999
Q ss_pred HHHHHHHHHHHHHh
Q 002199 793 TKAVSRRAALHEMI 806 (954)
Q Consensus 793 ~~al~~lA~ly~~l 806 (954)
...|..++.++..+
T Consensus 353 ~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 353 KEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888877654
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.7e-23 Score=220.83 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..++.|..+|..++..|+|++|+.+|+++++.+ .+. .++..+|.+|..+|++++|+..++++++++|.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI----------TYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH----------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 4567888888888888888888888888888888 655 78888888888888888888888888888876
Q ss_pred c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 525 F-------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 525 ~-------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
. +.++..+|.+|..+|++++|+..|++++.+.|
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 110 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 6 67888888888888888888888888877655
No 27
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=1.4e-23 Score=229.04 Aligned_cols=298 Identities=15% Similarity=0.122 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV----- 521 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel----- 521 (954)
.+..+...|..++..|+|++|+.+|+++++..|.+. ...+.++..+|.+|...|++++|+..+++++.+
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 77 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 467889999999999999999999999999998874 233578999999999999999999999999987
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 522 -DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 522 -~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
.|....++..+|.+|..+|++++|+..|++++.+.+... +.
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------~~----- 119 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN---------------------------------DK----- 119 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------------CH-----
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc---------------------------------Cc-----
Confidence 455688999999999999999999999999998755320 00
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRK--------------------YEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~--------------------~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
+....++..+|.++..+|+ +++|+..+++++.+.+....
T Consensus 120 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~--------- 178 (338)
T 3ro2_A 120 ------------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD--------- 178 (338)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred ------------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC---------
Confidence 0113456677888888888 89999999998887554311
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEA 740 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeA 740 (954)
.......+..+|.+|...|++++|+.++++++.+.+.... .......+..+|.++...|++++|
T Consensus 179 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 179 --RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------------KAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1222347888999999999999999999999876432211 223345778899999999999999
Q ss_pred HHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCHHHH
Q 002199 741 VEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY------TKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 741 i~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~------~~al~~lA~ly~~lg~~eeA 812 (954)
+.+|++++.+.+. ..+....++..+|.++..+|++++|+.++++++.+.+.. ..++..+|.+|..+|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999999988642 234458899999999999999999999999999886543 56889999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 002199 813 ASDLQRLVSILEN 825 (954)
Q Consensus 813 i~~~ekAL~l~p~ 825 (954)
+.+|++++++.+.
T Consensus 323 ~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 323 MHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999654
No 28
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=2e-23 Score=235.61 Aligned_cols=294 Identities=15% Similarity=0.085 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI 567 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ 567 (954)
+..+..+|.+++..|++++|+..|++++++.|.+ ..++..+|.+|..+|++++|+.+|++++.+.+....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD------ 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc------
Confidence 5788999999999999999999999999999988 468999999999999999999999999987543210
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccC----------
Q 002199 568 EAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS------EKLLEMKADALYMLRK---------- 631 (954)
Q Consensus 568 ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~------~~~~~~lA~~~~~lg~---------- 631 (954)
.......+..++..+...|+++ +|+..+.+++.+.|.. ..++..+|.+|...|+
T Consensus 83 -------~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 83 -------QLGEAKASGNLGNTLKVLGNFD---EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred -------cHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 1122456778899999999999 7888888888776532 5589999999999999
Q ss_pred ----------HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 632 ----------YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 632 ----------~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
+++|+..+++++.+.+.... .......+..+|.+|...|++++|+.++++++.+.+...
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGD-----------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988654311 122234788999999999999999999999998755433
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAI 779 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi 779 (954)
. ....+..+..+|.++...|++++|+.+|++++.+.+. ..+....++..+|.+|..+|++++|+
T Consensus 222 ~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 222 D--------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp C--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred C--------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 2 1223457788999999999999999999999988642 22344789999999999999999999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 780 ADCSLAMALDENY------TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 780 ~~~ekAL~ldP~~------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|++++.+.+.. ..++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 9999999885543 7789999999999999999999999999997654
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=2.7e-23 Score=222.35 Aligned_cols=256 Identities=14% Similarity=0.021 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-- 525 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-- 525 (954)
.+.++.+|..++..|+|++|+.+|+++++.+|.+. .++..+|.+|..+|++++|+..|+++++ .|.+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~ 71 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----------YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK 71 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----------TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh
Confidence 35677888888888888888888888888888876 6888888888888888888888888888 3322
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 526 --LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 526 --~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
..++..+|.++..+|++++|+.+|+++++++|
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~---------------------------------------------- 105 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT---------------------------------------------- 105 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc----------------------------------------------
Confidence 45588888888888888888888887766544
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
..+.++..+|.++..+|++++|+..|++++.+.|.+.. .|+.+|...+..+++
T Consensus 106 ----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 106 ----------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK-----------------VFYELGQAYYYNKEY 158 (272)
T ss_dssp ----------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH-----------------HHHHHHHHHHHTTCH
T ss_pred ----------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH-----------------HHHHHHHHHHHHHHH
Confidence 45567788899999999999999999999998877643 677888444555699
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccCCc----h
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR---YTEAVEHYTVALSTNIESR----P 756 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~---~eeAi~~y~kAL~l~~~~~----p 756 (954)
++|+..|++++++.|.+.. .+..+|.++...++ +++|+..|++++.+....+ .
T Consensus 159 ~~A~~~~~~a~~~~p~~~~--------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYI--------------------GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHH--------------------HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred HHHHHHHHHHHHhCccchH--------------------HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 9999999999998887632 45567888888888 8889999999998752211 2
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg 807 (954)
....++..+|.+|..+|++++|+.+|+++++++|+++.++-.++.+....+
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 245789999999999999999999999999999999999988877765443
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.5e-23 Score=216.88 Aligned_cols=253 Identities=19% Similarity=0.199 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAA 570 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~ 570 (954)
.+..|..+|.+++..|++++|+..|+++++++ .++.+++.+|.+|..+|++++|+..|++++.+.|....+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------- 74 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD-------- 74 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc--------
Confidence 35899999999999999999999999999999 899999999999999999999999999999987753100
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 571 DGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 571 ~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
+ +..+.++..+|.++..+|++++|+..|++++.+.|.
T Consensus 75 ------------------------~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-- 111 (258)
T 3uq3_A 75 ------------------------Y-----------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-- 111 (258)
T ss_dssp ------------------------H-----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--
T ss_pred ------------------------h-----------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--
Confidence 0 011457788899999999999999999999988763
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
+.++..+|++++|+..+++++...|. ....+..+|.+
T Consensus 112 -----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------~~~~~~~~~~~ 148 (258)
T 3uq3_A 112 -----------------------ADILTKLRNAEKELKKAEAEAYVNPE--------------------KAEEARLEGKE 148 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHCCHH--------------------HHHHHHHHHHH
T ss_pred -----------------------hHHHHHHhHHHHHHHHHHHHHHcCcc--------------------hHHHHHHHHHH
Confidence 34566778899999999999886543 23467778999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
++..|++++|+.+|++++.+. |....++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|..+|+++
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999998 6778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHH
Q 002199 811 QAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQA 849 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a 849 (954)
+|+.+|++++++.|... ..|.+...+..+..+
T Consensus 225 ~A~~~~~~a~~~~~~~~-------~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 225 SALETLDAARTKDAEVN-------NGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHH-------TTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhChhhc-------CCCchHHHHHHHHHh
Confidence 99999999999985432 135555444444443
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=8.8e-23 Score=218.30 Aligned_cols=244 Identities=15% Similarity=0.107 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..++.+|.+++..|++++|+..|+++++++|.+..+++.+|.+|..+|++++|+..|++++. .|.+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~------------- 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA------------- 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-------------
Confidence 57889999999999999999999999999999999999999999999999999999999988 3321
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
......++..+|.++..+|++++|+..|++++++.|.+..
T Consensus 70 ---------------------------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 109 (272)
T 3u4t_A 70 ---------------------------------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD- 109 (272)
T ss_dssp ---------------------------------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-
T ss_pred ---------------------------------------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH-
Confidence 0113567889999999999999999999999999997754
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
+|..+|.+|...|++++|+.+|++++.+.|.+.. .+..+|...+
T Consensus 110 ----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------------~~~~l~~~~~ 153 (272)
T 3u4t_A 110 ----------------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK--------------------VFYELGQAYY 153 (272)
T ss_dssp ----------------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH--------------------HHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH--------------------HHHHHHHHHH
Confidence 7889999999999999999999999999887643 5667885556
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ---IADAIADCSLAMALD---EN-----YTKAVSRRAA 801 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~---~eeAi~~~ekAL~ld---P~-----~~~al~~lA~ 801 (954)
..+++++|+.+|++++.+. |....+++.+|.++..+++ +++|+..|++++++. |+ ...++..+|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 229 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK----PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 6679999999999999999 6778999999999999999 999999999999886 54 3478999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 802 LHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 802 ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
+|..+|++++|+.+|+++++++|++...+
T Consensus 230 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 230 YYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 99999999999999999999977665543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=2.9e-22 Score=219.16 Aligned_cols=282 Identities=11% Similarity=-0.004 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.+.|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------- 86 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------------- 86 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---------------
Confidence 56889999999999999999999999999999999999999999999999999999988877654
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
.+..++..+|.++...|++++|+..+++++...|.....
T Consensus 87 -----------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 125 (327)
T 3cv0_A 87 -----------------------------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125 (327)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred -----------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 445566777888888888888888888888877765431
Q ss_pred hhhccCcchhhHHHHHHHHHH-HH-HHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLI-SK-SYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~L-g~-~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
.......... ......+ +. ++...|++++|+.++++++...|.+. ..+..+|.+
T Consensus 126 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------~~~~~la~~ 181 (327)
T 3cv0_A 126 GSVNLQADVD----IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA--------------------QLHASLGVL 181 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH--------------------HHHHHHHHH
T ss_pred HHHHhHHHHH----HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH--------------------HHHHHHHHH
Confidence 1110000000 0001122 44 58889999999999999999988653 256678999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
+...|++++|+.+|++++.+. |....++..+|.++...|++++|+..|++++.++|.+..+++.+|.+|..+|+++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR----PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999998 7778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 811 QAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
+|+..|++++++.|....... ..........+..++.++..++..+.+
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTG-EASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC------CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccccc-cchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999776311100 000000334455666666665555443
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.89 E-value=1.9e-22 Score=211.11 Aligned_cols=200 Identities=17% Similarity=0.145 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
|..+..+..+|..++..|++++|+..|+++|+.+|++. .+++++|.++..+|++++|+..|+++++++|+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP----------EALYWLARTQLKLGLVNPALENGKTLVARTPR 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 55667899999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 002199 525 FLKVYMRAAKCHLVL-----------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK 593 (954)
Q Consensus 525 ~~~a~~~LA~iy~~l-----------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g 593 (954)
+..+++.+|.++..+ |++++|+..|+++++++|++ ...++.++..+...|
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------------------~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------------------APLHLQRGLVYALLG 132 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------------------HHHHHHHHHHHHHcC
Confidence 999999999999999 99999999999999999986 456788999999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHH
Q 002199 594 TSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLI 673 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~L 673 (954)
+++ +|+..|++++.++ .++.++..+|.+|..+|++++|+..|++++++.|.+.. ++..+
T Consensus 133 ~~~---~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------~~~~l 191 (217)
T 2pl2_A 133 ERD---KAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD-----------------LRVRY 191 (217)
T ss_dssp CHH---HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHH
T ss_pred ChH---HHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----------------HHHHH
Confidence 999 8999999999999 99999999999999999999999999999999998754 67889
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 002199 674 SKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal 694 (954)
|.++..+|++++|+..|+++-
T Consensus 192 a~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 192 ASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTC---------------
T ss_pred HHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999998874
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=1.4e-21 Score=214.63 Aligned_cols=258 Identities=10% Similarity=0.073 Sum_probs=165.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 503 ISLGRMREALEDCMMAATVDPNF-LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 503 ~~lg~~eeAl~~~~kALel~P~~-~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
+..|+|..|+..++++...+|++ ..+.+.++++|+.+|++++|+..++.. +|.. +..
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-------------------~~a 67 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-------------------LQA 67 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-------------------HHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-------------------HHH
Confidence 34455555555555544444444 234444455555555555555444331 1111 122
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALSI--SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS 659 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~--~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~ 659 (954)
+..++..+...++++ +|+..+++++.. +|.++.+++.+|.++...|++++|+..|++ |.+..
T Consensus 68 ~~~la~~~~~~~~~~---~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~-------- 131 (291)
T 3mkr_A 68 VRMFAEYLASHSRRD---AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE-------- 131 (291)
T ss_dssp HHHHHHHHHCSTTHH---HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH--------
T ss_pred HHHHHHHHcCCCcHH---HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH--------
Confidence 223333333344444 445555555443 477777888888888888888888888877 33322
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 002199 660 VTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE 739 (954)
Q Consensus 660 ~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee 739 (954)
++..+|.+|..+|++++|+..|++++..+|+..... .... ....+...|++++
T Consensus 132 ---------~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~---------------l~~a---~~~l~~~~~~~~e 184 (291)
T 3mkr_A 132 ---------CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ---------------LATA---WVSLAAGGEKLQD 184 (291)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---------------HHHH---HHHHHHCTTHHHH
T ss_pred ---------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH---------------HHHH---HHHHHhCchHHHH
Confidence 566778888888888888888888888877652100 0001 1122334578888
Q ss_pred HHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH-HHHHHHH
Q 002199 740 AVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQ-AASDLQR 818 (954)
Q Consensus 740 Ai~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~ee-Ai~~~ek 818 (954)
|+..|++++... |.++.+++++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++.+ |..++++
T Consensus 185 A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 185 AYYIFQEMADKC----SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888888888887 66778888888888888888888888888888888888888888888888888865 4577788
Q ss_pred HHHHhhhhHHH
Q 002199 819 LVSILENQSAE 829 (954)
Q Consensus 819 AL~l~p~~~~~ 829 (954)
++++.|++...
T Consensus 261 ~~~~~P~~~~~ 271 (291)
T 3mkr_A 261 LKDAHRSHPFI 271 (291)
T ss_dssp HHHHCTTCHHH
T ss_pred HHHhCCCChHH
Confidence 88888877653
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=3.1e-21 Score=211.77 Aligned_cols=250 Identities=12% Similarity=0.015 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--chhhhhhHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS--AAAVCLDRRITIEA 569 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l--~P~~~~~~~~~~ea 569 (954)
......++.+|+.+|+++.|+..++. .+|....++..++..+...+++++|++.|++++.. +|++
T Consensus 34 ~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~---------- 100 (291)
T 3mkr_A 34 VERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN---------- 100 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC----------
Confidence 45777889999999999999998866 26667889999999999999999999999999876 4765
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
...++.++..+...|+++ +|+..+.+ |.++.++..+|.+|..+|++++|+..|+++++..|++
T Consensus 101 ---------~~~~~~la~~~~~~g~~~---~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 101 ---------TTFLLMAASIYFYDQNPD---AALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp ---------HHHHHHHHHHHHHTTCHH---HHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ---------HHHHHHHHHHHHHCCCHH---HHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 456889999999999999 67776666 8999999999999999999999999999999998865
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLIS--KSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg--~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~l 727 (954)
.. ..+..+ .++...|++++|+.+|++++...|.+. ..+..+
T Consensus 164 ~~-----------------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~--------------------~~~~~l 206 (291)
T 3mkr_A 164 TL-----------------TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL--------------------LLLNGQ 206 (291)
T ss_dssp HH-----------------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH--------------------HHHHHH
T ss_pred HH-----------------HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH--------------------HHHHHH
Confidence 21 111122 333355899999999999999988763 378999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD-AIADCSLAMALDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ee-Ai~~~ekAL~ldP~~~~al~~lA~ly~~l 806 (954)
|.++...|++++|+..|++++.++ |.++.++.++|.++..+|++.+ +..+++++++++|+++.+. .+..+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~----p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~ 278 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKD----SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKE 278 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHH
Confidence 999999999999999999999999 8889999999999999999976 5689999999999998765 456667
Q ss_pred cCHHHHHHHH
Q 002199 807 RDYTQAASDL 816 (954)
Q Consensus 807 g~~eeAi~~~ 816 (954)
+.+++|+..|
T Consensus 279 ~~fd~~~~~~ 288 (291)
T 3mkr_A 279 NDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777776655
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=8.3e-22 Score=210.49 Aligned_cols=255 Identities=13% Similarity=-0.031 Sum_probs=206.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHL 537 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~ 537 (954)
+...|+|++|+..|+++++..+.+. ...+.+++.+|.++..+|++++|+..|+++++++|.+..++..+|.+|.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTD------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccC------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3445889999999999999854321 1235899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHH
Q 002199 538 VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEK 617 (954)
Q Consensus 538 ~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~ 617 (954)
.+|++++|+.+|++++.++| .++.
T Consensus 89 ~~~~~~~A~~~~~~al~~~~--------------------------------------------------------~~~~ 112 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDP--------------------------------------------------------TYNY 112 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--------------------------------------------------------TCTH
T ss_pred HccCHHHHHHHHHHHHhcCc--------------------------------------------------------cccH
Confidence 99999999999988877655 3456
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG 697 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~ 697 (954)
++..+|.+|..+|++++|+..|++++++.|.+.. .+..+ .++...|++++|+..+++++...
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----------------~~~~~-~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF-----------------RSLWL-YLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHH-HHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH-----------------HHHHH-HHHHHhcCHHHHHHHHHHHHhcC
Confidence 7788888999999999999999999988887632 12222 23466789999999999998887
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHH
Q 002199 698 SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD 777 (954)
Q Consensus 698 p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ee 777 (954)
|.... ...++..+...+++++|+..+.+++...+...+....++..+|.+|..+|++++
T Consensus 175 ~~~~~---------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 175 DKEQW---------------------GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp CCCST---------------------HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcchH---------------------HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 76643 123566777888899999999999888754445668899999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 778 AIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 778 Ai~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
|+..|++++.++|.+... .+.++..+|++++|+..|
T Consensus 234 A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 234 ATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 999999999999977543 477889999999999887
No 37
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.2e-19 Score=210.94 Aligned_cols=308 Identities=11% Similarity=-0.019 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYK----NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS----LGRMREALEDCMM 517 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~----~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~----lg~~eeAl~~~~k 517 (954)
..+++++.+|..|+. .+++++|+.+|+++++. .+. .+++.+|.+|.. .+++++|+..|++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~----------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYT----------PAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH----------HHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCH----------HHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 356788889999888 89999999999999886 333 788999999998 8999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--
Q 002199 518 AATVDPNFLKVYMRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE-- 591 (954)
Q Consensus 518 ALel~P~~~~a~~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~-- 591 (954)
+++. .++.+++.||.+|.. .+++++|+.+|++++.... ...++.++..+..
T Consensus 105 a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---------------------~~a~~~Lg~~y~~g~ 161 (490)
T 2xm6_A 105 AALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR---------------------DSGQQSMGDAYFEGD 161 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---------------------HHHHHHHHHHHHHTS
T ss_pred HHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---------------------HHHHHHHHHHHHcCC
Confidence 8875 578889999999988 8899999999999877532 2334455555554
Q ss_pred --hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHH
Q 002199 592 --QKTSEAASSALERINEALSISSCSEKLLEMKADALYM----LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLA 665 (954)
Q Consensus 592 --~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~----lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~ 665 (954)
.++++ +|+..|++++.. .++.++..+|.+|.. .+++++|+.+|+++++.....
T Consensus 162 g~~~d~~---~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---------------- 220 (490)
T 2xm6_A 162 GVTRDYV---MAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDEL---------------- 220 (490)
T ss_dssp SSCCCHH---HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH----------------
T ss_pred CCCCCHH---HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHH----------------
Confidence 34444 566666666554 356666666666666 666666666666665543211
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcchhhHHH-------------HHHHHHHH---HHHHHHHHH
Q 002199 666 RLWRWRLISKSYFC----IGKLEVALDLLQKLEQVGSISDRYGSEIL-------------ESSMSLAG---TVRALLHHK 725 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~----lG~~eeAl~~l~kal~l~p~~~~~~~~~l-------------~~~~~l~~---~~~~~~~~~ 725 (954)
+++.+|.+|.. .+++++|+.+|++++...+ ......+- .....+.. ......++.
T Consensus 221 ---a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~ 295 (490)
T 2xm6_A 221 ---GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQY 295 (490)
T ss_dssp ---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHH
T ss_pred ---HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44555666654 5566666666666554321 00000000 00000000 000123455
Q ss_pred HHHHHHHHc-----CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHH
Q 002199 726 SAGNEAFKS-----GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG---QIADAIADCSLAMALDENYTKAVS 797 (954)
Q Consensus 726 ~lG~~~~~~-----g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg---~~eeAi~~~ekAL~ldP~~~~al~ 797 (954)
.+|.+|... +++++|+.+|+++++.. .+.+++++|.+|...| ++++|+.+|+++++. .++.+++
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 367 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence 566666665 66666666666666543 3455666666666644 566666666666665 4566666
Q ss_pred HHHHHHHH----hcCHHHHHHHHHHHHHH
Q 002199 798 RRAALHEM----IRDYTQAASDLQRLVSI 822 (954)
Q Consensus 798 ~lA~ly~~----lg~~eeAi~~~ekAL~l 822 (954)
.+|.+|.. .+++++|+.+|+++++.
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 66666666 66666666666666654
No 38
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.9e-19 Score=211.64 Aligned_cols=310 Identities=12% Similarity=0.004 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 002199 447 TCEMWRLRGNQAYK----NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS----LGRMREALEDCMMA 518 (954)
Q Consensus 447 ~ae~l~~~G~~~~~----~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~----lg~~eeAl~~~~kA 518 (954)
.+.+++.+|..|+. .+++++|+.+|+++++.. +. .+++++|.+|.. .+++++|+..|+++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 141 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LP----------QAQQNLGVMYHEGNGVKVDKAESVKWFRLA 141 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH----------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH----------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 46789999999999 999999999999998863 43 789999999999 89999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhh------------HHHHHHHHHHHHHHH---hH
Q 002199 519 ATVDPNFLKVYMRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLD------------RRITIEAADGLQKAQ---KV 579 (954)
Q Consensus 519 Lel~P~~~~a~~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~------------~~~~~ea~~~l~~~~---~~ 579 (954)
++. .++.+++.+|.+|.. .+++++|+.+|+++++........ .....++...+.++. ..
T Consensus 142 ~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 219 (490)
T 2xm6_A 142 AEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDE 219 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 876 578999999999998 889999999999998863211000 001111111111111 12
Q ss_pred HHHHHHHHHHHH----hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHhchhhhhhhh
Q 002199 580 TEYINCSGKLLE----QKTSEAASSALERINEALSISSCSEKLLEMKADALYM----LRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 580 ~~~l~~a~~ll~----~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~----lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
..++.++..+.. .++++ +|+..|.+++.. .++.+++.+|.+|.. .+++++|+.+|+++++.....
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~---~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~-- 292 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYT---QSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD-- 292 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHH---HHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH--
T ss_pred HHHHHHHHHHHcCCCCCCCHH---HHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH--
Confidence 334444444443 34444 566666666543 345566666666666 666666666666665543211
Q ss_pred hhhhccCcchhhHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 652 SVLADNGSVTYSLARLWRWRLISKSYFCI-----GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-----G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
+++.+|.+|... +++++|+.+|+++++..+ ..++..
T Consensus 293 -----------------a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~----------------------~~a~~~ 333 (490)
T 2xm6_A 293 -----------------GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD----------------------ATAQAN 333 (490)
T ss_dssp -----------------HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC----------------------HHHHHH
T ss_pred -----------------HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC----------------------HHHHHH
Confidence 455666666666 677777777777665421 245677
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 727 AGNEAFKSG---RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 727 lG~~~~~~g---~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
+|.+|...| ++++|+.+|++++... ++.+++++|.+|.. .+++++|+.+|+++++. .++.+++.+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L 405 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQL 405 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 899998866 8999999999999864 57899999999999 89999999999999986 469999999
Q ss_pred HHHHHH----hcCHHHHHHHHHHHHHHhh
Q 002199 800 AALHEM----IRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 800 A~ly~~----lg~~eeAi~~~ekAL~l~p 824 (954)
|.+|.. .+++++|+.+|++++++.|
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999 8999999999999999973
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=2.3e-21 Score=202.81 Aligned_cols=196 Identities=16% Similarity=0.128 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.+++.+|.+++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------------- 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------------- 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------
Confidence 8999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHhHHHHHHHHHHHHHh-----------cChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 002199 573 LQKAQKVTEYINCSGKLLEQ-----------KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEH 641 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~-----------g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ek 641 (954)
...++.++..+... |+++ +|+..|++++.++|.++.++..+|.++..+|++++|+..|++
T Consensus 73 ------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~---~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 73 ------LGGYMVLSEAYVALYRQAEDRERGKGYLE---QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp ------HHHHHHHHHHHHHHHHTCSSHHHHHHHHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhhhhhhhhcccccCHH---HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44566777777777 8888 899999999999999999999999999999999999999999
Q ss_pred hchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHH
Q 002199 642 TLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL 721 (954)
Q Consensus 642 aL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~ 721 (954)
+++++ .+.. +++.+|.+|..+|++++|+..|+++++++|.+..
T Consensus 144 al~~~-~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------- 186 (217)
T 2pl2_A 144 ALALE-DTPE-----------------IRSALAELYLSMGRLDEALAQYAKALEQAPKDLD------------------- 186 (217)
T ss_dssp HHHHC-CCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH-------------------
T ss_pred HHhcc-cchH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-------------------
Confidence 99998 5533 6789999999999999999999999999998754
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.+..+|.++...|++++|+..|+++-
T Consensus 187 -~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 187 -LRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -HHHHHHHHHTC---------------
T ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 56678999999999999999998864
No 40
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=3.2e-20 Score=220.41 Aligned_cols=185 Identities=11% Similarity=0.015 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHhch-hhhhhhhhhhhccCcchhhH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYM-------LRKYE-------EAIQLCEHTLP-VAEKNFASVLADNGSVTYSL 664 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~-------lg~~e-------eAi~~~ekaL~-l~p~~~~~~~~~~~~~~~~~ 664 (954)
.++..|++++...|.++.+|+.+|.++.. .|+++ +|+..|++++. +.|++..
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------------- 322 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------------- 322 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH-------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH-------------
Confidence 67789999999999999999999999987 79987 99999999997 7887644
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
.|..++.++...|++++|...|++++.+.|.+.. ..|...|..+.+.|++++|+..|
T Consensus 323 ----l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------------~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 323 ----LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-------------------LVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch-------------------HHHHHHHHHHHHhcCHHHHHHHH
Confidence 6888999999999999999999999998776521 25667788888899999999999
Q ss_pred HHHHhhccCCchhhHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 745 TVALSTNIESRPFAAICFCNRAAA-LQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 745 ~kAL~l~~~~~p~~a~~~~~lA~~-y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
++|+... |....++...+.+ +...|++++|+..|+++++..|+++.+|..++.++..+|++++|...|++++...
T Consensus 380 ~~Al~~~----~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 380 KKAREDA----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTCT----TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhcc----CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9999986 4445555555544 4468999999999999999999999999999999999999999999999999884
Q ss_pred h
Q 002199 824 E 824 (954)
Q Consensus 824 p 824 (954)
|
T Consensus 456 ~ 456 (530)
T 2ooe_A 456 S 456 (530)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=3.9e-20 Score=201.54 Aligned_cols=259 Identities=17% Similarity=0.193 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~e 568 (954)
..+...|.+++..|++++|+..|++++++.|.+ ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 76 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 76 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------
Confidence 567889999999999999999999999999998 4788899999999999999999999998753210
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 569 a~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
...|....++..+|.++..+|++++|+..+++++.+.+.
T Consensus 77 -----------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 77 -----------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115 (338)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 001122456788999999999999999999999998875
Q ss_pred hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhCCCCcchhhHHH
Q 002199 649 NFASVLADNGSVTYSLARLWRWRLISKSYFCIGK--------------------LEVALDLLQKLEQVGSISDRYGSEIL 708 (954)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~--------------------~eeAl~~l~kal~l~p~~~~~~~~~l 708 (954)
... ......++..+|.+|...|+ +++|+.++++++.+.+.
T Consensus 116 ~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~--------- 175 (338)
T 3ro2_A 116 LND-----------KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA--------- 175 (338)
T ss_dssp TTC-----------HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred hcC-----------chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh---------
Confidence 422 12234478899999999999 99999999888765221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 709 ESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAM 786 (954)
Q Consensus 709 ~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL 786 (954)
..........+..+|.++...|++++|+.+|++++.+.+. ..+....++.++|.++..+|++++|+.++++++
T Consensus 176 -----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 176 -----LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp -----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1112334557788999999999999999999999988642 234556699999999999999999999999999
Q ss_pred HhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 787 ALDENY------TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 787 ~ldP~~------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+.+.. ..++..+|.++..+|++++|+.+|++++++.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 887655 7889999999999999999999999999997654
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=1e-19 Score=195.81 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=64.3
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 725 KSAGNEAFK----SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 725 ~~lG~~~~~----~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
..+|.++.. .+++++|+.+|++++... .+.+++++|.+|.. .+++++|+.+|++++++.| +.++
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~ 221 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGC 221 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHH
Confidence 345555555 566666666666666543 24566667777777 6777777777777776654 6667
Q ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHHHhhhhHHHHH
Q 002199 797 SRRAALHEM----IRDYTQAASDLQRLVSILENQSAEKA 831 (954)
Q Consensus 797 ~~lA~ly~~----lg~~eeAi~~~ekAL~l~p~~~~~~~ 831 (954)
+.+|.+|.. .+++++|+.+|++++++.|.+.....
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777776 77777777777777777666655543
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=1.9e-20 Score=212.90 Aligned_cols=261 Identities=18% Similarity=0.184 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL----KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT 566 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~----~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~ 566 (954)
.+..+..+|.+++..|++++|+..|++++++.|++. .++..+|.+|..+|++++|+.+|++++.+....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------- 119 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------- 119 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------
Confidence 357788999999999999999999999999999986 589999999999999999999999998752210
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 567 IEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 567 ~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
...|....++..+|.+|..+|++++|+.+|++++.+.
T Consensus 120 -------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 120 -------------------------------------------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp -------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 0112234678889999999999999999999999986
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCCCcchhhHHHH
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK-----------------LEVALDLLQKLEQVGSISDRYGSEILE 709 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~-----------------~eeAl~~l~kal~l~p~~~~~~~~~l~ 709 (954)
+.... ......++..+|.+|...|+ +++|+.++++++.+.+..
T Consensus 157 ~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--------- 216 (411)
T 4a1s_A 157 RQLGD-----------RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--------- 216 (411)
T ss_dssp HHHTC-----------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHhhc-----------hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc---------
Confidence 54311 11223478899999999999 999999999887653211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 710 ~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
.........+..+|.+++..|++++|+.+|++++.+.+. .......++.++|.+|..+|++++|+.+|++++.
T Consensus 217 -----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 217 -----GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 112334567888999999999999999999999998742 2234456999999999999999999999999999
Q ss_pred hCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 788 LDENY------TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 788 ldP~~------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+.+.. ..++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 87754 7889999999999999999999999999997754
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=1.9e-19 Score=193.75 Aligned_cols=230 Identities=12% Similarity=0.041 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhhHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLDRRITIE 568 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~~~~~~e 568 (954)
.+++.+|.+|...|++++|+..|+++++ |.++.+++.+|.+|.. .+++++|+.+|++++++..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----------- 73 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY----------- 73 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC-----------
Confidence 8999999999999999999999999999 7889999999999999 9999999999999998742
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHH
Q 002199 569 AADGLQKAQKVTEYINCSGKLLE----QKTSEAASSALERINEALSISSCSEKLLEMKADALYM----LRKYEEAIQLCE 640 (954)
Q Consensus 569 a~~~l~~~~~~~~~l~~a~~ll~----~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~----lg~~eeAi~~~e 640 (954)
...++.++..+.. .++++ +|+..|++++... ++.++..+|.+|.. .+++++|+.+|+
T Consensus 74 ----------~~a~~~lg~~~~~g~~~~~~~~---~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 74 ----------SNGCHLLGNLYYSGQGVSQNTN---KALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp ----------HHHHHHHHHHHHHTSSSCCCHH---HHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhCCCCcccCHH---HHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 4557788888888 88888 8999999999874 89999999999999 999999999999
Q ss_pred HhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 002199 641 HTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC----IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG 716 (954)
Q Consensus 641 kaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~----lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~ 716 (954)
++++..+.. +++.+|.+|.. .+++++|+.+|+++++..+
T Consensus 139 ~a~~~~~~~-------------------a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~------------------ 181 (273)
T 1ouv_A 139 KACDLNDGD-------------------GCTILGSLYDAGRGTPKDLKKALASYDKACDLKD------------------ 181 (273)
T ss_dssp HHHHTTCHH-------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------------------
T ss_pred HHHhcCcHH-------------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------------------
Confidence 999876422 67889999999 9999999999999987632
Q ss_pred HHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHh
Q 002199 717 TVRALLHHKSAGNEAFK----SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMAL 788 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~----~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~l 788 (954)
...+..+|.+|.. .+++++|+.+|++++... + ..+++++|.+|.. .+++++|+.+|++++++
T Consensus 182 ----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 182 ----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp ----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 2467889999999 999999999999999986 3 6789999999999 99999999999999999
Q ss_pred CCCCHHHHH
Q 002199 789 DENYTKAVS 797 (954)
Q Consensus 789 dP~~~~al~ 797 (954)
.|..+..++
T Consensus 252 ~~~~a~~~l 260 (273)
T 1ouv_A 252 GAKGACDIL 260 (273)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 987655443
No 45
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=2e-21 Score=238.35 Aligned_cols=272 Identities=16% Similarity=0.048 Sum_probs=207.4
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
.++|+++.+++.+| ...|++++|++.|++++...
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~------------------------------------------- 421 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGA------------------------------------------- 421 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC--------------------------------------------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhc-------------------------------------------
Confidence 45777777777666 67788888888887776320
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+......+|.+..+++.+|.+|+.+|++++|+..|+++++++|++.. +|+.+|.+|..
T Consensus 422 -----~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~ 479 (681)
T 2pzi_A 422 -----LDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR-----------------LVWYRAVAELL 479 (681)
T ss_dssp -----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH-----------------HHHHHHHHHHH
T ss_pred -----ccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH-----------------HHHHHHHHHHH
Confidence 11223567888899999999999999999999999999999998855 78899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
+|++++|+..|+++++++|.+.. .+.++|.++...|++++ +.+|++|++++ |.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~--------------------~~~~lg~~~~~~g~~~~-~~~~~~al~~~----P~~~ 534 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELA--------------------PKLALAATAELAGNTDE-HKFYQTVWSTN----DGVI 534 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSH--------------------HHHHHHHHHHHHTCCCT-TCHHHHHHHHC----TTCH
T ss_pred cCCHHHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHHcCChHH-HHHHHHHHHhC----CchH
Confidence 99999999999999999998855 56779999999999999 99999999999 7888
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhhhhHHHHHhhcCCCC
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA-ASDLQRLVSILENQSAEKAKQSRSPG 838 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA-i~~~ekAL~l~p~~~~~~~~~~~~P~ 838 (954)
.+|+++|.+|..+|++++|+.+|+++++++|++..+++++|.++...++.++| ...++++++..+.... ..|.
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~------~~~~ 608 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP------TEPR 608 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT------TSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC------CcHH
Confidence 99999999999999999999999999999999999999999999888876655 6667766666443210 0122
Q ss_pred cchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCH--HHHHHHHHHHHHhhCCC
Q 002199 839 RTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTA--ADIKKAYRKAALKHHPD 897 (954)
Q Consensus 839 ~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~--~eIkkAYrklAl~~HPD 897 (954)
.......+..+. + ........+||++||++..... .+|+++||++|..-+++
T Consensus 609 ~~~l~~~ll~~~--l-----~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~ 662 (681)
T 2pzi_A 609 VLQIRALVLGGA--L-----DWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ 662 (681)
T ss_dssp HHHHHHHHHHHH--H-----HHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHH--H-----HHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh
Confidence 211111111111 1 1123345569999999766655 67999999999966655
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=4.8e-20 Score=185.99 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=162.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKL 693 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ka 693 (954)
+++.+|+.+|.+|..+|++++|+..|+++++++|++.. +|..+|.+|..+|++++|+..+.++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE-----------------TLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999998855 7889999999999999999999999
Q ss_pred HhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc
Q 002199 694 EQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG 773 (954)
Q Consensus 694 l~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg 773 (954)
+...|.... .+..+|..+...++++.|+..+.+++.+. |....++..+|.+|..+|
T Consensus 66 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~a~~~~~~a~~~~----~~~~~~~~~lg~~~~~~g 121 (184)
T 3vtx_A 66 VVLDTTSAE--------------------AYYILGSANFMIDEKQAAIDALQRAIALN----TVYADAYYKLGLVYDSMG 121 (184)
T ss_dssp HHHCCCCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTT
T ss_pred HhcCchhHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHhC
Confidence 999887744 45668999999999999999999999999 778899999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 774 ~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
++++|+..|+++++++|.++.+++.+|.+|..+|++++|+.+|+++++++|++..+
T Consensus 122 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 122 EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999886543
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=1.8e-20 Score=196.14 Aligned_cols=220 Identities=15% Similarity=0.154 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAA 570 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~ 570 (954)
.+..|+.+|.+++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|++++.+.|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------- 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS------------- 88 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------
Confidence 3688999999999999999999999999999999999999999999999999999999988877544
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 571 DGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 571 ~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
....++..+|.++..+|++++|+..++++++..|.+.
T Consensus 89 -------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 89 -------------------------------------------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp -------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred -------------------------------------------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 4455677788888888888888888888888877653
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
. .+..+|.+|...|++++|+.++++++.+.|.+.. .+..+|.+
T Consensus 126 ~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------~~~~l~~~ 168 (243)
T 2q7f_A 126 D-----------------LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE--------------------ARFQFGMC 168 (243)
T ss_dssp H-----------------HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHH
T ss_pred H-----------------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH--------------------HHHHHHHH
Confidence 3 5677888888888888888888888887775532 45567888
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg 807 (954)
+...|++++|+.+|++++... |....++..+|.+|..+|++++|+..|+++++++|++..++..++.+....+
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQD----PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHcCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 888888888888888888887 6667788889999999999999999999999999999888888877665544
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.84 E-value=4.2e-20 Score=193.37 Aligned_cols=209 Identities=14% Similarity=0.081 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.-.+..|+.+|..++..|+|++|+.+|+++++..|.+. .++..+|.++...|++++|+..|+++++++|.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 89 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----------IPYINFANLLSSVNELERALAFYDKALELDSS 89 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34567899999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
+..++..+|.++..+|++++|+..|++++++.|.+ ...+..++..++..|+++ +|+..
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~~~~---~A~~~ 147 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------------------GDLFYMLGTVLVKLEQPK---LALPY 147 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------------------HHHHHHHHHHHHHTSCHH---HHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhccHH---HHHHH
Confidence 99999999999999999999999999999998865 344677888899999999 89999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
+.+++...|.++.++..+|.++...|++++|+..+++++...|.+.. .+..+|.+|...|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 148 LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD-----------------AFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCTT
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH-----------------HHHHHHHHHHHccCHH
Confidence 99999999999999999999999999999999999999999887643 6788999999999999
Q ss_pred HHHHHHHHHHhhCCCCcc
Q 002199 685 VALDLLQKLEQVGSISDR 702 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~ 702 (954)
+|+.+|++++.+.|.+..
T Consensus 211 ~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 211 KALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccCcchHH
Confidence 999999999999998755
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=9.8e-20 Score=183.69 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
+.+..|..+|..++.+|+|++|+.+|+++|+++|++. .+|..+|.+|..+|++++|+..+.+++...|+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----------ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 4567899999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
..++..+|.++...++++.|+..+.+++.+.|.+ ...+..++..+...|+++ +|+..|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------------------~~~~~~lg~~~~~~g~~~---~A~~~~ 130 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------------------ADAYYKLGLVYDSMGEHD---KAIEAY 130 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------------------hHHHHHHHHHHHHhCCch---hHHHHH
Confidence 9999999999999999999999999999999976 455778899999999999 899999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
++++.++|.++.++..+|.+|..+|++++|+..|+++|+++|++
T Consensus 131 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 131 EKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999999999999999999976
No 50
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=3.8e-19 Score=201.52 Aligned_cols=332 Identities=11% Similarity=-0.004 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH--HHHHHHcCCHHHHH----------
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR--AATRISLGRMREAL---------- 512 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l--A~~y~~lg~~eeAl---------- 512 (954)
++...........+...+++++|+.+++++.+..+... .......|+.+ ....+.++.+..+.
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~-----~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~ 83 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQME-----EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL 83 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHhhcCcccccccccccch
Confidence 44556666777788999999999999999877654421 01112233332 22233344444444
Q ss_pred -HHHHHHHhcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 002199 513 -EDCMMAATVDPNFLK------VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINC 585 (954)
Q Consensus 513 -~~~~kALel~P~~~~------a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~ 585 (954)
..+++ ++..|.... .++.+|.++...|++++|+.+|++++.+...... .......+..+
T Consensus 84 ~~~~~~-i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~a~~~~~l 149 (383)
T 3ulq_A 84 SDLLLE-IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-------------RIEKAEFFFKM 149 (383)
T ss_dssp HHHHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-------------HHHHHHHHHHH
T ss_pred hhHHHH-HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-------------HHHHHHHHHHH
Confidence 44444 333333333 3445999999999999999999999997432210 01124567888
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 586 SGKLLEQKTSEAASSALERINEALSISS-------CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 586 a~~ll~~g~~~~a~eAL~~l~kaL~~~P-------~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
|..+...|+++ +|+..+.+++.+.+ ....++..+|.+|..+|++++|+..|++++++.+....
T Consensus 150 g~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 219 (383)
T 3ulq_A 150 SESYYYMKQTY---FSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ------- 219 (383)
T ss_dssp HHHHHHTTCHH---HHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHcCCHH---HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-------
Confidence 99999999999 78888888888743 23568899999999999999999999999999875521
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
......++..+|.+|..+|++++|+.+|++++.+.+.... ......++..+|.++...|+++
T Consensus 220 ----~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~ 281 (383)
T 3ulq_A 220 ----PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--------------LPSLPQAYFLITQIHYKLGKID 281 (383)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------GGGHHHHHHHHHHHHHHTTCHH
T ss_pred ----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--------------chhHHHHHHHHHHHHHHCCCHH
Confidence 1222347889999999999999999999999985321111 0122456788999999999999
Q ss_pred HHHHHHHHHHhhccC-CchhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 739 EAVEHYTVALSTNIE-SRPFAAICFCNRAAALQALGQ---IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 739 eAi~~y~kAL~l~~~-~~p~~a~~~~~lA~~y~~lg~---~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
+|+.+|++++.+.+. ..+.....+..+|.+|...|+ +.+|+..++++ ...|....++..+|.+|..+|++++|+.
T Consensus 282 ~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 282 KAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999998532 114444457789999999999 88888888876 3345567789999999999999999999
Q ss_pred HHHHHHHHhh
Q 002199 815 DLQRLVSILE 824 (954)
Q Consensus 815 ~~ekAL~l~p 824 (954)
+|++++++..
T Consensus 361 ~~~~al~~~~ 370 (383)
T 3ulq_A 361 YFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999843
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=4.1e-19 Score=189.46 Aligned_cols=232 Identities=10% Similarity=-0.031 Sum_probs=194.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|..+..+..+|..++..|++++|+.+|++++.++|.+. .+|..+|.+|..+|++++|+..|+++++++
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----------EVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH----------HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|.+..++..+|.+|..+|++++|+..|++++++.|.+.. ...........++++ +|+
T Consensus 108 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------------------~~~~~~~~~~~~~~~---~A~ 164 (275)
T 1xnf_A 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--------------------RSLWLYLAEQKLDEK---QAK 164 (275)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHCHH---HHH
T ss_pred ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHhcCHH---HHH
Confidence 999999999999999999999999999999999997621 111112224557777 788
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
..+.+++...|.+...+. ++.+++..+++++|+..+++++...|.... .....++.+|.+|...|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE-------------HLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-------------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc-------------cccHHHHHHHHHHHHcCC
Confidence 899899998888766554 788888999999999999999998875421 112368899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
+++|+.+|++++.+.|.+.. ..+.++...+++++|++.|
T Consensus 231 ~~~A~~~~~~al~~~p~~~~-----------------------~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHNFV-----------------------EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCCTTCH-----------------------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCchhHH-----------------------HHHHHHHHHHHHHhhHHHH
Confidence 99999999999999986643 1356677888899998887
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=1.1e-19 Score=213.23 Aligned_cols=218 Identities=14% Similarity=0.073 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 002199 507 RMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEI-ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINC 585 (954)
Q Consensus 507 ~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~-eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~ 585 (954)
.+++|+..+..++...|..+.+++.+|.+|..+|+| ++|+.+|+++++++|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p---------------------------- 134 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP---------------------------- 134 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT----------------------------
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC----------------------------
Confidence 356677777777777777777888888888878877 777777777666443
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHH
Q 002199 586 SGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLA 665 (954)
Q Consensus 586 a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~ 665 (954)
.++.++..+|.+|..+|++++|+..|++++++.|+. .
T Consensus 135 ----------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~-------------- 171 (474)
T 4abn_A 135 ----------------------------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-V-------------- 171 (474)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH-H--------------
T ss_pred ----------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH-H--------------
Confidence 445566777777777778888888887777777652 2
Q ss_pred HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Q 002199 666 RLWRWRLISKSYFCI---------GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-- 734 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~l---------G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-- 734 (954)
++..+|.+|..+ |++++|+.+|+++++++|.+.. .+..+|.+|...
T Consensus 172 ---~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------------~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 172 ---SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR--------------------SWYILGNAYLSLYF 228 (474)
T ss_dssp ---HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHHHH
Confidence 567778888888 9999999999999999997744 567789999998
Q ss_pred ------CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 735 ------GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 735 ------g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
|++++|+.+|++++.++|. .+..+.+|+++|.+|..+|++++|+..|+++++++|++..++..++.++..+|+
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999821 018899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 002199 809 YTQAASDLQRL 819 (954)
Q Consensus 809 ~eeAi~~~ekA 819 (954)
+++|+..+.++
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 99999887654
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=4.8e-19 Score=187.15 Aligned_cols=209 Identities=15% Similarity=0.015 Sum_probs=193.0
Q ss_pred HHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 445 QET-CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 445 ~~~-ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
|.. +..|..+|..++..|++++|+.+|++++...|.+. .++..+|.+|...|++++|+..|+++++++|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----------DAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 444 89999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLN--SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~--l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
.+..++..+|.+|..+|++++|+.+|++++. ..|.. ...+..++..++..|+++ +|
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------------~~~~~~la~~~~~~g~~~---~A 160 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-------------------SRVFENLGLVSLQMKKPA---QA 160 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH-------------------HHHHHHHHHHHHHTTCHH---HH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc-------------------HHHHHHHHHHHHHcCCHH---HH
Confidence 9999999999999999999999999999999 55543 445677888899999999 88
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
+..+.+++...|.++.++..+|.++..+|++++|+..+++++...|.+.. .+..++.++...|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g 223 (252)
T 2ho1_A 161 KEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR-----------------SLLLGIRLAKVFE 223 (252)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHH-----------------HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-----------------HHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999886643 5778899999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcc
Q 002199 682 KLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~ 702 (954)
++++|+.++++++.+.|.+..
T Consensus 224 ~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 224 DRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CHHHHHHHHHHHHHHCTTSHH
T ss_pred CHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999988754
No 54
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=4.5e-18 Score=201.85 Aligned_cols=347 Identities=12% Similarity=0.051 Sum_probs=256.6
Q ss_pred ccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHH-HHH
Q 002199 425 NKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAA-TRI 503 (954)
Q Consensus 425 ~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~-~y~ 503 (954)
....+...+... ....|.....|...|..+.+.|++++|+..|++++...|+ . .+|..++. ++.
T Consensus 27 ~~~~a~~~~e~a----l~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~----------~lw~~~~~~~~~ 91 (530)
T 2ooe_A 27 PIDKARKTYERL----VAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-I----------DLWKCYLSYVRE 91 (530)
T ss_dssp CHHHHHHHHHHH----HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-H----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h----------HHHHHHHHHHHH
Confidence 344444455543 2344677889999999999999999999999999999994 3 56766664 334
Q ss_pred HcCCHHHHHH----HHHHHHhc---CCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhchhhhhhHH---
Q 002199 504 SLGRMREALE----DCMMAATV---DPNFLKVYMRAAKCHLV---------LGEIENAQHYYHKLLNSAAAVCLDRR--- 564 (954)
Q Consensus 504 ~lg~~eeAl~----~~~kALel---~P~~~~a~~~LA~iy~~---------lG~~eeAl~~yekaL~l~P~~~~~~~--- 564 (954)
..|++++|.+ .|++++.. +|....+|...+..... .|++++|+..|++++. .|.......
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~ 170 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRD 170 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHH
Confidence 5677766655 66666653 56667777777776655 6788888888888887 343211000
Q ss_pred ----------------------HHHHHH----------------------------------------------------
Q 002199 565 ----------------------ITIEAA---------------------------------------------------- 570 (954)
Q Consensus 565 ----------------------~~~ea~---------------------------------------------------- 570 (954)
....+.
T Consensus 171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~ 250 (530)
T 2ooe_A 171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQ 250 (530)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCS
T ss_pred HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcc
Confidence 000000
Q ss_pred --------HHHHHHH-----hHHHHHHHHHHHHH-------hcChHHH----HHHHHHHHHHHh-cCCCCHHHHHHHHHH
Q 002199 571 --------DGLQKAQ-----KVTEYINCSGKLLE-------QKTSEAA----SSALERINEALS-ISSCSEKLLEMKADA 625 (954)
Q Consensus 571 --------~~l~~~~-----~~~~~l~~a~~ll~-------~g~~~~a----~eAL~~l~kaL~-~~P~~~~~~~~lA~~ 625 (954)
..+.++. ....|+..+..+.. .|+++.+ .+|+..|++++. +.|.+..++..+|.+
T Consensus 251 ~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 251 TLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 0000000 02234444444443 4665422 268999999997 899999999999999
Q ss_pred HHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhh
Q 002199 626 LYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGS 705 (954)
Q Consensus 626 ~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~ 705 (954)
+...|++++|+.+|++++++.|.+.. .+|..++.++.+.|++++|+..|+++++..|....
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~--- 391 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDIDPT----------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH--- 391 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSSCHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH---
T ss_pred HHhcCCHHHHHHHHHHHhCccccCch----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH---
Confidence 99999999999999999999886521 16788899999999999999999999998765432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 706 EILESSMSLAGTVRALLHHKSAGNE-AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 706 ~~l~~~~~l~~~~~~~~~~~~lG~~-~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
.+...+.+ +...|++++|+.+|+++++.. |.++.+|..++.++..+|++++|...|++
T Consensus 392 -----------------~~~~~a~~~~~~~~~~~~A~~~~e~al~~~----p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 392 -----------------VYVTAALMEYYCSKDKSVAFKIFELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp -----------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHcCChhHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 11122322 346899999999999999998 77789999999999999999999999999
Q ss_pred HHHhCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 785 AMALDENYTK----AVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 785 AL~ldP~~~~----al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++...|.++. .|...+......|+.+.+...++++++..|++.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 9998765543 787888888899999999999999999998643
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=1.4e-18 Score=183.59 Aligned_cols=208 Identities=15% Similarity=0.057 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
+.+|+.+|.+++..|++++|+..|+++++++|.+..+++.+|.+|...|++++|+..|++++.+.|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--------------
Confidence 578888899999999999999999999998888888888899999888888888888888766543
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhch--hhhhh
Q 002199 572 GLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLP--VAEKN 649 (954)
Q Consensus 572 ~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~--l~p~~ 649 (954)
.+..++..+|.++...|++++|+.++++++. ..|.+
T Consensus 103 ------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 140 (252)
T 2ho1_A 103 ------------------------------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER 140 (252)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH
T ss_pred ------------------------------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc
Confidence 3455667778888888888888888888887 44433
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~ 729 (954)
.. ++..+|.+|...|++++|+.+|++++...|.+.. .+..+|.
T Consensus 141 ~~-----------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------------~~~~la~ 183 (252)
T 2ho1_A 141 SR-----------------VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS--------------------VALEMAD 183 (252)
T ss_dssp HH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--------------------HHHHHHH
T ss_pred HH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH--------------------HHHHHHH
Confidence 21 4556666666667766666666666665554321 2344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 730 ~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
++...|++++|+.+|++++... |....++..++.++..+|++++|+.++++++++.|+++.++
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGG----GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5666666666666666665555 34445555556666666666666666666666666555543
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=1.1e-18 Score=179.67 Aligned_cols=210 Identities=13% Similarity=0.042 Sum_probs=192.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|..+..|..+|..++..|++++|+.+|+++++..|.+. .++..+|.++..+|++++|+..++++++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 73 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----------LAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 467788999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 524 NFLKVYMRAAKCHLVL-GEIENAQHYYHKLLN--SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~l-G~~eeAl~~yekaL~--l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
.+..++..+|.++... |++++|+..|++++. ..|.. ...++.++..+...|+++ +
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~---~ 131 (225)
T 2vq2_A 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP-------------------YIANLNKGICSAKQGQFG---L 131 (225)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH-------------------HHHHHHHHHHHHHTTCHH---H
T ss_pred CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch-------------------HHHHHHHHHHHHHcCCHH---H
Confidence 9999999999999999 999999999999999 44432 345778888999999999 8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhh-hhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAE-KNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p-~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
|+..+.+++...|.++.++..+|.++...|++++|+..+++++...| .+.. .+..++.++..
T Consensus 132 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 194 (225)
T 2vq2_A 132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD-----------------DLLLGWKIAKA 194 (225)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-----------------HHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999988 6543 45678889999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcc
Q 002199 680 IGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
.|+++.|..+++.++...|.+..
T Consensus 195 ~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 195 LGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCcHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999888755
No 57
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=4.3e-18 Score=191.65 Aligned_cols=304 Identities=14% Similarity=0.072 Sum_probs=236.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
....++.+..+|..++..|++++|+.++++++...|... ......++..+|.++...|++++|+..+++++.+.|
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 84 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 84 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 344577888999999999999999999999999987653 112355788999999999999999999999998865
Q ss_pred Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHH
Q 002199 524 NF------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEA 597 (954)
Q Consensus 524 ~~------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~ 597 (954)
.. ..++..+|.++..+|++++|+..|++++.+.+.. +..
T Consensus 85 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---------------------------------~~~-- 129 (373)
T 1hz4_A 85 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ---------------------------------HLE-- 129 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------------------TCT--
T ss_pred hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---------------------------------ccc--
Confidence 33 3457889999999999999999999998864321 000
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
..|....++..+|.++...|++++|+.++++++.+.+.... .. ....+..+|.++
T Consensus 130 -------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~-~~~~~~~la~~~ 184 (373)
T 1hz4_A 130 -------------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP-----------QQ-QLQCLAMLIQCS 184 (373)
T ss_dssp -------------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG-----------GG-GHHHHHHHHHHH
T ss_pred -------------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc-----------HH-HHHHHHHHHHHH
Confidence 01223456778999999999999999999999998775321 00 123677899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...|++++|+.++++++.+.+...... . ........++.++...|++++|+.++++++...+.....
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHS-D------------WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCH-H------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcch-h------------HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 999999999999999998754322100 0 001112234566889999999999999998876543333
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
....+..+|.++...|++++|+..+++++...+. ...++..+|.++..+|++++|...|++++.+.+.
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 4456789999999999999999999999887532 2358889999999999999999999999999654
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=193.49 Aligned_cols=282 Identities=12% Similarity=0.012 Sum_probs=183.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|..+..+..+|..++..|+|++|+.+|++++++..... +......+.++..+|.+|..+|++++|+..+++++
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456688999999999999999999999999999999621100 00011235899999999999999999999999999
Q ss_pred hc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002199 520 TV--------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE 591 (954)
Q Consensus 520 el--------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~ 591 (954)
.+ .|....++..+|.+|..+|++++|+.+|++++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--------------------------------- 143 (311)
T 3nf1_A 97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK--------------------------------- 143 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---------------------------------
Confidence 88 4667889999999999999999999999998875211
Q ss_pred hcChHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 592 QKTSEAASSALERINEAL-SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 592 ~g~~~~a~eAL~~l~kaL-~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
.. ...|....++..+|.++...|++++|+.++++++.+...... .........+
T Consensus 144 ----------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~ 198 (311)
T 3nf1_A 144 ----------------VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG---------PDDPNVAKTK 198 (311)
T ss_dssp ----------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC---------TTCHHHHHHH
T ss_pred ----------------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC---------CCCHHHHHHH
Confidence 00 012234567888999999999999999999999988432100 0001112367
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|.+|...|++++|+.+|++++.+.+....... .............+...+..+...+.+.+|+..+.+++..
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV-----DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-----CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 88999999999999999999999875321100000 0000000111222333444444555555555555555554
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP 790 (954)
. |..+.++..+|.+|..+|++++|+.+|++++++.|
T Consensus 274 ~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 274 S----PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp C----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred C----chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 4 55555555556666666666666666655555544
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.5e-18 Score=189.54 Aligned_cols=279 Identities=13% Similarity=-0.018 Sum_probs=206.6
Q ss_pred hhHHHHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH-------cCC
Q 002199 443 AFQETCEMWRLRGNQAYKN----NNL----TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS-------LGR 507 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~----g~y----~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~-------lg~ 507 (954)
..+.....|......-... ++. .+|+..|+++|..+|.++ .+|+++|.++.. +|+
T Consensus 3 ~~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~----------~~w~~~~~~~~~~~~~l~~~g~ 72 (308)
T 2ond_A 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----------DIWYEAAQYLEQSSKLLAEKGD 72 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHhchhhhhccc
Confidence 3445555666555443332 233 789999999999999997 999999999874 588
Q ss_pred H-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhH
Q 002199 508 M-------REALEDCMMAAT-VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKV 579 (954)
Q Consensus 508 ~-------eeAl~~~~kALe-l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~ 579 (954)
+ ++|+..|++|++ ++|++..+|..+|.++..+|++++|+..|++++++.|.+..
T Consensus 73 ~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------ 134 (308)
T 2ond_A 73 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT------------------ 134 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH------------------
T ss_pred hhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc------------------
Confidence 6 999999999999 79999999999999999999999999999999999886410
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM-LRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~-lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
..++..+..+...|+++ +|+..|.+++...|....++...+.+... .|++++|+.+|+++++..|.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~---~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 204 (308)
T 2ond_A 135 LVYIQYMKFARRAEGIK---SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE------- 204 (308)
T ss_dssp HHHHHHHHHHHHHHCHH---HHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH-------
T ss_pred HHHHHHHHHHHHhcCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------
Confidence 14666677777777877 77888888888888887777666555443 68888888888888888887643
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
.|..++.++..+|++++|+.+|++++...+..+... ...+...+..+...|+++
T Consensus 205 ----------~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~----------------~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 205 ----------YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS----------------GEIWARFLAFESNIGDLA 258 (308)
T ss_dssp ----------HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC----------------HHHHHHHHHHHHHHSCHH
T ss_pred ----------HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH----------------HHHHHHHHHHHHHcCCHH
Confidence 567788888888888888888888888532111100 123455677777788888
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ 801 (954)
+|+.+++++++..|+...... ++.+ ..-.+.+.++|.++.++..+|.
T Consensus 259 ~a~~~~~~a~~~~p~~~~~~~-----~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 259 SILKVEKRRFTAFREEYEGKE-----TALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHHHHHHHHHHHTTTTTSSCH-----HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred HHHHHHHHHHHHcccccccch-----HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 888888888888864322210 1111 1112566778888888776663
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=2.5e-19 Score=219.84 Aligned_cols=178 Identities=23% Similarity=0.232 Sum_probs=167.7
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 611 ~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
..|+++.++.++|.+|..+|++++|+..|+++|+++|++.. +|+.+|.+|..+|++++|+.+|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~-----------------a~~nLg~~l~~~g~~~eA~~~~ 66 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-----------------AHSNLASVLQQQGKLQEALMHY 66 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 46889999999999999999999999999999999998855 7899999999999999999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHH
Q 002199 691 QKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQ 770 (954)
Q Consensus 691 ~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~ 770 (954)
+++++++|++.. ++.++|.+|..+|++++|+++|++|++++ |..+.+|+++|.+|.
T Consensus 67 ~~Al~l~P~~~~--------------------a~~nLg~~l~~~g~~~~A~~~~~kAl~l~----P~~~~a~~~Lg~~~~ 122 (723)
T 4gyw_A 67 KEAIRISPTFAD--------------------AYSNMGNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASIHK 122 (723)
T ss_dssp HHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 999999997743 67889999999999999999999999999 888999999999999
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 771 ALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 771 ~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
.+|++++|+..|++|++++|+++.++.++|.+|..+|++++|++.|++++++.|+..+.
T Consensus 123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~ 181 (723)
T 4gyw_A 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhh
Confidence 99999999999999999999999999999999999999999999999999999887553
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=4.1e-19 Score=208.50 Aligned_cols=215 Identities=10% Similarity=0.035 Sum_probs=191.7
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM-REALEDCMMAATVDPNFLKVYMRAAKCHLVLGE 541 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~-eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~ 541 (954)
.+++|+..+.+++...|.+. .+|+.+|.+|..+|+| ++|+..|+++++++|++..+|+.+|.+|..+|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a----------~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEA----------QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCH----------HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCchhH----------HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 37778888888888888776 9999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---------cChHHHHHHHHHHHHHHhcC
Q 002199 542 IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ---------KTSEAASSALERINEALSIS 612 (954)
Q Consensus 542 ~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~---------g~~~~a~eAL~~l~kaL~~~ 612 (954)
+++|+.+|+++++++|+ ...+..++..+... ++++ +|+..|++++.++
T Consensus 153 ~~~A~~~~~~al~~~p~--------------------~~~~~~lg~~~~~~~~~~~~~~~g~~~---~A~~~~~~al~~~ 209 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKN--------------------KVSLQNLSMVLRQLQTDSGDEHSRHVM---DSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHHHHTTCCC--------------------HHHHHHHHHHHTTCCCSCHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCC--------------------HHHHHHHHHHHHHhccCChhhhhhhHH---HHHHHHHHHHHhC
Confidence 99999999999999986 23466677777777 7777 8999999999999
Q ss_pred CCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHhchhhh---hhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 613 SCSEKLLEMKADALYML--------RKYEEAIQLCEHTLPVAE---KNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 613 P~~~~~~~~lA~~~~~l--------g~~eeAi~~~ekaL~l~p---~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
|.++.++..+|.+|..+ |++++|+..|++++++.| .+.. +|+.+|.+|..+|
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----------------~~~~lg~~~~~~g 272 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD-----------------LHLNRATLHKYEE 272 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH-----------------HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH-----------------HHHHHHHHHHHcC
Confidence 99999999999999999 999999999999999998 5543 7889999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
++++|+..|+++++++|.+.. ++..++.++...|++++|+..+.+.
T Consensus 273 ~~~~A~~~~~~al~l~p~~~~--------------------a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 273 SYGEALEGFSQAAALDPAWPE--------------------PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998743 4556788888888888888766543
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.81 E-value=1.5e-18 Score=202.46 Aligned_cols=301 Identities=12% Similarity=-0.041 Sum_probs=216.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCcHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM---REALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~---eeAl~~~~kALel~P~~~~a 528 (954)
..+|..+++.|++++|+..|+++++.. +. .+++.+|.+|+..|++ ++|+..|+++++. ++.+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~~----------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A 71 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--YS----------EAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRA 71 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CC----------TGGGTCC-------------------------------C
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--CH----------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHH
Confidence 457899999999999999999998874 43 6788999999999999 9999999999977 6789
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHhhchhhhhhHHHHHHH-------------HHHHH---HHHhHHHHHHHHH
Q 002199 529 YMRAAKCHLVLG-----EIENAQHYYHKLLNSAAAVCLDRRITIEA-------------ADGLQ---KAQKVTEYINCSG 587 (954)
Q Consensus 529 ~~~LA~iy~~lG-----~~eeAl~~yekaL~l~P~~~~~~~~~~ea-------------~~~l~---~~~~~~~~l~~a~ 587 (954)
++.+|.++...+ ++++|+.+|++++...+... ...+... ...+. .......++.++.
T Consensus 72 ~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A--~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~ 149 (452)
T 3e4b_A 72 QARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNT--LIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVL 149 (452)
T ss_dssp HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999777776 88999999999998654331 1111111 11111 1223556777888
Q ss_pred HHHHhcChHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 588 KLLEQKTSEAAS-SALERINEALSISSCSEKLLEMKADALYMLR---KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 588 ~ll~~g~~~~a~-eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg---~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
.+...+.++.+. .+..++..+...+|. +++.+|.+|...| ++++|+.+|+++++..+....
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~------------ 214 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ------------ 214 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH------------
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH------------
Confidence 888877666433 344445555555554 8999999999999 999999999999999876632
Q ss_pred HHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHcCC
Q 002199 664 LARLWRWRLISKSYFCI----GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE-A--FKSGR 736 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~l----G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~-~--~~~g~ 736 (954)
.++.+|.+|... +++++|+.+|+++. |.+.. ++.++|.+ + ...++
T Consensus 215 -----~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~--------------------a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 215 -----RVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA--------------------SWVSLAQLLYDFPELGD 266 (452)
T ss_dssp -----HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH--------------------HHHHHHHHHHHSGGGCC
T ss_pred -----HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH--------------------HHHHHHHHHHhCCCCCC
Confidence 457899999765 79999999999997 44433 56678887 4 46899
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hc
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG-----QIADAIADCSLAMALDENYTKAVSRRAALHEM----IR 807 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg-----~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~----lg 807 (954)
+++|+.+|++++... ++.+++++|.+|. .| ++++|+.+|++++ +.++.+++.+|.+|.. ..
T Consensus 267 ~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~ 336 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKV 336 (452)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSC
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCc
Confidence 999999999998654 7889999999998 66 9999999999998 8999999999999987 45
Q ss_pred CHHHHHHHHHHHHHH
Q 002199 808 DYTQAASDLQRLVSI 822 (954)
Q Consensus 808 ~~eeAi~~~ekAL~l 822 (954)
++++|+.+|+++.+.
T Consensus 337 d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 337 YPQKALDHLLTAARN 351 (452)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=8.3e-19 Score=190.14 Aligned_cols=266 Identities=14% Similarity=0.044 Sum_probs=195.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhh
Q 002199 490 PLVLCYSNRAATRISLGRMREALEDCMMAATV--------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCL 561 (954)
Q Consensus 490 ~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~ 561 (954)
..+.++..+|.++...|++++|+..|++++++ .|....++..+|.+|..+|++++|+.+|++++.+...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--- 101 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK--- 101 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Confidence 46789999999999999999999999999995 6777889999999999999999999999998875211
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 002199 562 DRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEAL-SISSCSEKLLEMKADALYMLRKYEEAIQLCE 640 (954)
Q Consensus 562 ~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL-~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~e 640 (954)
.. ...|....++..+|.++..+|++++|+.+++
T Consensus 102 ----------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 135 (311)
T 3nf1_A 102 ----------------------------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135 (311)
T ss_dssp ----------------------------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----------------------------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 00 1123345678889999999999999999999
Q ss_pred HhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHH
Q 002199 641 HTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRA 720 (954)
Q Consensus 641 kaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~ 720 (954)
+++++...... ........++..+|.+|...|++++|+.+|++++.+...... ......
T Consensus 136 ~a~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~~~~ 194 (311)
T 3nf1_A 136 RALEIREKVLG---------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG------------PDDPNV 194 (311)
T ss_dssp HHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC------------TTCHHH
T ss_pred HHHHHHHHhcC---------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC------------CCCHHH
Confidence 99988632200 000112347889999999999999999999999886211000 001123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-----ch------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-----RP------FAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-----~p------~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
...+..+|.++...|++++|+.+|++++.+.+.. .+ .....+..++..+...+.+.+|+..+.+++...
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 274 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS 274 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC
Confidence 4567789999999999999999999999874210 01 134445555666667778888899999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 790 P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
|..+.++..+|.+|..+|++++|+.+|++++++.|.
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999653
No 64
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=7.5e-18 Score=173.48 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
.+.++..+|.+++..|++++|+..|+++++++|.+..++..+|.++..+|++++|+..|++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 71 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34555556666666666666666666666666655556666666666666655555555555443
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.81 E-value=5.2e-18 Score=177.36 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVP-LSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P-~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
++.|+.+|..++..|+|++|+.+|+++++++| .+. .+++++|.++..+|++++|+..|+++++++|++.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----------VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 37899999999999999999999999999998 665 7888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.+++.+|.+|..+|++++|+..|++++++.|.+.... .
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------------------------------------~--- 114 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE---------------------------------------K--- 114 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH---------------------------------------H---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH---------------------------------------H---
Confidence 9999999999999999999999999999988652100 0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh--hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 607 EALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK--NFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 607 kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~--~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
....++..+|.++..+|++++|+..|++++++.|. +.. +|+.+|.+|+..|
T Consensus 115 -------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~l~~~~~~~~ 167 (228)
T 4i17_A 115 -------LYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD-----------------ALYSLGVLFYNNG 167 (228)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH-----------------HHHHHHHHHHHHH
Confidence 00125777888888899999999999999988887 533 6677787776544
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.80 E-value=6.7e-19 Score=216.04 Aligned_cols=178 Identities=15% Similarity=0.185 Sum_probs=168.5
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...|+.+++|..+|..+.++|+|++|+.+|++||+++|++. .+|+++|.+|..+|++++|+..|++||++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----------~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----------AAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35688999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
+|+++.+|+++|.+|..+|++++|++.|+++++++|++ ...+.+++..+...|+++ +|
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------------------~~a~~~Lg~~~~~~g~~~---eA 130 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------------------ADAHSNLASIHKDSGNIP---EA 130 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCHH---HH
Confidence 99999999999999999999999999999999999986 566889999999999999 89
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
+..|+++++++|+++.++..+|.+|..+|++++|++.+++++++.|+...
T Consensus 131 i~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~ 180 (723)
T 4gyw_A 131 IASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE 180 (723)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHh
Confidence 99999999999999999999999999999999999999999999887643
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=2.5e-18 Score=179.76 Aligned_cols=205 Identities=13% Similarity=0.061 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhcc
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISS-CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADN 657 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P-~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~ 657 (954)
...++..|..++..|+++ +|+..|.+++.+.| .+..+++.+|.++..+|++++|+..|++++.+.|.+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------ 77 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYA---VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN------ 77 (228)
T ss_dssp HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH------
T ss_pred HHHHHHHHHHHHHccCHH---HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH------
Confidence 356777888888888888 78888888888887 77778888888888888888888888888888876643
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
+|+.+|.+|..+|++++|+..|++++.+.|.+... ....+..+..+|.++...|++
T Consensus 78 -----------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------~~~~~~~~~~~g~~~~~~~~~ 133 (228)
T 4i17_A 78 -----------AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI-------------EKLYAIYYLKEGQKFQQAGNI 133 (228)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-------------HHHHHHHHHHHhHHHHHhccH
Confidence 67778888888888888888888888888766431 123346677888888888888
Q ss_pred HHHHHHHHHHHhhccCCchh--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 738 TEAVEHYTVALSTNIESRPF--AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 738 eeAi~~y~kAL~l~~~~~p~--~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
++|+.+|++++.++ |. .+.+++++|.+|..+|+ ..++++..+.+.....+ .+......+.|++|+.+
T Consensus 134 ~~A~~~~~~al~~~----p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~ 202 (228)
T 4i17_A 134 EKAEENYKHATDVT----SKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDY 202 (228)
T ss_dssp HHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHH
Confidence 88888888888887 67 77888888888876553 34566666766664433 44556667778999999
Q ss_pred HHHHHHHhhhhH
Q 002199 816 LQRLVSILENQS 827 (954)
Q Consensus 816 ~ekAL~l~p~~~ 827 (954)
|++++++.|++.
T Consensus 203 ~~~a~~l~p~~~ 214 (228)
T 4i17_A 203 LGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHhhcCCCCH
Confidence 999999965543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=4.8e-18 Score=192.48 Aligned_cols=256 Identities=13% Similarity=0.022 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP------ 523 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P------ 523 (954)
.++.+|..++..|+|++|+.+|++|+.+..... .....+.+++++|.+|..+|++++|+..+++|+++.+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVK----DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 455599999999999999999999999844322 0123568999999999999999999999999999843
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 524 -NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 524 -~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
....++..+|.+|..+|++++|+.+|++++.+.+... +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------~~------- 220 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---------------------------------QP------- 220 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------------CH-------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---------------------------------Ch-------
Confidence 3356899999999999999999999999998755320 00
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
+....++..+|.+|..+|++++|+.++++++.+.+..... . ....++..+|.+|..+|+
T Consensus 221 ----------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---------~--~~~~~~~~l~~~~~~~g~ 279 (383)
T 3ulq_A 221 ----------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL---------P--SLPQAYFLITQIHYKLGK 279 (383)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG---------G--GHHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc---------h--hHHHHHHHHHHHHHHCCC
Confidence 0123467889999999999999999999999975432110 0 112368899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccCCchhhH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR---YTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~---~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
+++|+.++++++.+.+.... ......+..+|.++...|+ +.+|+.+++++ . ..+...
T Consensus 280 ~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~----~~~~~~ 339 (383)
T 3ulq_A 280 IDKAHEYHSKGMAYSQKAGD---------------VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M----LYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c----CHHHHH
Confidence 99999999999886432111 0111224568999999999 78888888776 2 226778
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDE 790 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP 790 (954)
.++..+|.+|..+|++++|+.+|++++.+..
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998754
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=9.6e-18 Score=179.46 Aligned_cols=213 Identities=13% Similarity=0.044 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..++.+|.+++..|+|++|+..|+++++.+|.+ ..+++.+|.+|..+|++++|+..|++++.+.|.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~---------- 85 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID---------- 85 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC----------
Confidence 899999999999999999999999999999998 8999999999999999999999999999988753
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------ccCHHHHHHHHHH
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM--------LRKYEEAIQLCEH 641 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~--------lg~~eeAi~~~ek 641 (954)
|..+.+++.+|.+++. +|++++|+..|++
T Consensus 86 -------------------------------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~ 122 (261)
T 3qky_A 86 -------------------------------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL 122 (261)
T ss_dssp -------------------------------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred -------------------------------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 2335567888899988 9999999999999
Q ss_pred hchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHH
Q 002199 642 TLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL 721 (954)
Q Consensus 642 aL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~ 721 (954)
++...|++.. ++..+.. +..+. ....
T Consensus 123 ~l~~~p~~~~-----------------~~~a~~~--------------~~~~~-----------------------~~~~ 148 (261)
T 3qky_A 123 FIDRYPNHEL-----------------VDDATQK--------------IRELR-----------------------AKLA 148 (261)
T ss_dssp HHHHCTTCTT-----------------HHHHHHH--------------HHHHH-----------------------HHHH
T ss_pred HHHHCcCchh-----------------HHHHHHH--------------HHHHH-----------------------HHHH
Confidence 9999887632 1111111 11110 0112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCCC
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL----------GQIADAIADCSLAMALDEN 791 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l----------g~~eeAi~~~ekAL~ldP~ 791 (954)
..+..+|.+|+..|+|++|+..|++++...|.. +....+++.+|.+|..+ |++++|+..|+++++..|+
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDT-PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 235678999999999999999999999998654 45788999999999987 9999999999999999999
Q ss_pred CH---HHHHHHHHHHHHhcCHHHHH
Q 002199 792 YT---KAVSRRAALHEMIRDYTQAA 813 (954)
Q Consensus 792 ~~---~al~~lA~ly~~lg~~eeAi 813 (954)
++ .++..++.++..+++++++.
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 84 56666777777777766544
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=7.4e-18 Score=184.47 Aligned_cols=258 Identities=10% Similarity=0.010 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002199 466 EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL---GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEI 542 (954)
Q Consensus 466 eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l---g~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~ 542 (954)
+|.+++.+|-+..+... ..+ .++.. +++++|+..|.++ |.+|..+|++
T Consensus 3 ~a~~~~~~a~k~~~~~~----------~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~ 53 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSS----------GFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKEL 53 (292)
T ss_dssp CHHHHHHHHHHHSSCCC----------THH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCT
T ss_pred cHHHHHHHHHHHhCcCC----------Ccc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCH
Confidence 57788888888877642 122 12232 2599999999887 6678899999
Q ss_pred HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002199 543 ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMK 622 (954)
Q Consensus 543 eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~l 622 (954)
++|+.+|++++.+.+.. ++.. ....++..+
T Consensus 54 ~~A~~~~~~al~~~~~~---------------------------------~~~~-----------------~~a~~~~~l 83 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKA---------------------------------GNED-----------------EAGNTYVEA 83 (292)
T ss_dssp HHHHHHHHHHHHHHHHT---------------------------------TCHH-----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---------------------------------CCHH-----------------HHHHHHHHH
Confidence 99999999998864421 1111 113467889
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCc
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI-GKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-G~~eeAl~~l~kal~l~p~~~ 701 (954)
|.+|..+|++++|+.+|++++.+.+.... ......++..+|.+|... |++++|+.+|++++.+.|...
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----------FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999875421 111233678999999996 999999999999999866432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch---hhHHHHHHHHHHHHHhcCHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP---FAAICFCNRAAALQALGQIADA 778 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p---~~a~~~~~lA~~y~~lg~~eeA 778 (954)
. .......+.++|.++...|+|++|+.+|++++.+.|.... ....++.++|.++..+|++++|
T Consensus 153 ~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 153 S--------------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp C--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred C--------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2 1112345778999999999999999999999999875432 2345889999999999999999
Q ss_pred HHHHHHHHHhCCCCHHH-----HHHHHHHHH--HhcCHHHHHHHHHHHHHHhhhhH
Q 002199 779 IADCSLAMALDENYTKA-----VSRRAALHE--MIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 779 i~~~ekAL~ldP~~~~a-----l~~lA~ly~--~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+.+|++++.++|.+..+ +..++.++. ..+++++|+..|++++.++|...
T Consensus 219 ~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 99999999999987654 444555554 45789999999999999977553
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=6.1e-17 Score=183.30 Aligned_cols=330 Identities=15% Similarity=0.069 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH--HHHcCCHHHHH---------HHHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT--RISLGRMREAL---------EDCM 516 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~--y~~lg~~eeAl---------~~~~ 516 (954)
.......=..+..++++++|+.+++++....+... .......|+.+-.. .+.++.+..+. ..++
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~-----~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQME-----EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBC-----CCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 33333334456889999999999998876543321 11112333333222 11222222222 3333
Q ss_pred HHHhcC-C--Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002199 517 MAATVD-P--NF--LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE 591 (954)
Q Consensus 517 kALel~-P--~~--~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~ 591 (954)
++-... + .. ...++.+|..+...|++++|+..|++++.+.+.... .......+..+|..+..
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~a~~~~~lg~~y~~ 153 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-------------DIEKAEFHFKVAEAYYH 153 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-------------HHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-------------hHHHHHHHHHHHHHHHH
Confidence 322211 1 11 236778999999999999999999999997653211 11235567888999999
Q ss_pred hcChHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhH
Q 002199 592 QKTSEAASSALERINEALSISSC-------SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSL 664 (954)
Q Consensus 592 ~g~~~~a~eAL~~l~kaL~~~P~-------~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~ 664 (954)
.|+++ .|+..+.+++.+.+. ...++..+|.+|..+|++++|+..|++++++.+.... ..
T Consensus 154 ~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----------~~ 219 (378)
T 3q15_A 154 MKQTH---VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-----------DR 219 (378)
T ss_dssp TTCHH---HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HH
T ss_pred cCCcH---HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-----------HH
Confidence 99999 788888888876432 2567889999999999999999999999998764311 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
....++..+|.+|..+|++++|+.+|++++.+.... .......++..+|.++...|++++|+.+|
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------CChhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 223478899999999999999999999998842210 01112456788999999999999999999
Q ss_pred HHHHhhccCC-chhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 745 TVALSTNIES-RPFAAICFCNRAAALQALGQ---IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 745 ~kAL~l~~~~-~p~~a~~~~~lA~~y~~lg~---~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
++++.+.+.. .+.....+..++.++...++ +.+|+..+++. ...|....++..+|.+|..+|++++|+.+|++++
T Consensus 285 ~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999986432 24445567888888988888 88888888872 2334556788899999999999999999999999
Q ss_pred HHhhh
Q 002199 821 SILEN 825 (954)
Q Consensus 821 ~l~p~ 825 (954)
++...
T Consensus 364 ~~~~~ 368 (378)
T 3q15_A 364 KAQED 368 (378)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98543
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=2.7e-17 Score=175.95 Aligned_cols=208 Identities=13% Similarity=0.089 Sum_probs=170.5
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALD 688 (954)
Q Consensus 609 L~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~ 688 (954)
..+.|.++..++.+|..++..|+|++|+..|++++...|.+... ..+++.+|.+|+.+|++++|+.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--------------~~a~~~lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA--------------ADAQFYLARAYYQNKEYLLAAS 73 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH--------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch--------------HHHHHHHHHHHHHhCcHHHHHH
Confidence 34678899999999999999999999999999999999876210 1268899999999999999999
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 689 LLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK--------SGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 689 ~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~--------~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
.|++++.+.|.++.. ..++..+|.+++. .|++++|+..|++++...|.+ +....
T Consensus 74 ~~~~~l~~~p~~~~~-----------------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~ 135 (261)
T 3qky_A 74 EYERFIQIYQIDPRV-----------------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-ELVDD 135 (261)
T ss_dssp HHHHHHHHCTTCTTH-----------------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-TTHHH
T ss_pred HHHHHHHHCCCCchh-----------------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc-hhHHH
Confidence 999999999977541 2457779999999 999999999999999999654 23333
Q ss_pred HH--------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----------cCHHHHH
Q 002199 761 CF--------------CNRAAALQALGQIADAIADCSLAMALDEN---YTKAVSRRAALHEMI----------RDYTQAA 813 (954)
Q Consensus 761 ~~--------------~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---~~~al~~lA~ly~~l----------g~~eeAi 813 (954)
++ +.+|.+|..+|++++|+..|++++...|+ .+.+++.+|.+|..+ |++++|+
T Consensus 136 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~ 215 (261)
T 3qky_A 136 ATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAV 215 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence 33 88999999999999999999999999998 578999999999987 9999999
Q ss_pred HHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 814 SDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 814 ~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
..|+++++.+|+.... ..+...+..+...++.++.
T Consensus 216 ~~~~~~~~~~p~~~~~----------~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 216 ELYERLLQIFPDSPLL----------RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHCTTCTHH----------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCChHH----------HHHHHHHHHHHHHHHHhhh
Confidence 9999999997764332 1223455555555554433
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.4e-16 Score=175.38 Aligned_cols=230 Identities=13% Similarity=0.040 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVL-------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 509 eeAl~~~~kALel~P~~~~a~~~LA~iy~~l-------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
++|+..|++++.++|.++.+|+.+|.++... |++..+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~------------------------------------ 76 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA------------------------------------ 76 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHH------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhc------------------------------------
Confidence 7899999999999999999999999998754 443211
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALS-ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~-~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
.+.++ +|+..|++++. +.|.+..+|..+|.++...|++++|+..|++++.+.|.+..
T Consensus 77 ----------~~~~~---~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------- 134 (308)
T 2ond_A 77 ----------KLFSD---EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------- 134 (308)
T ss_dssp ----------HHHHH---HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---------
T ss_pred ----------ccchH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---------
Confidence 01112 56666777777 57888889999999999999999999999999999886532
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHH
Q 002199 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF-KSGRYTE 739 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~-~~g~~ee 739 (954)
.+|..+|.++...|++++|+..|+++++..|.... .+...+.... ..|++++
T Consensus 135 -------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--------------------~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 135 -------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH--------------------VYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp -------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH--------------------HHHHHHHHHHHTSCCHHH
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH--------------------HHHHHHHHHHHHcCCHHH
Confidence 15778899999999999999999999998886533 1222333322 2699999
Q ss_pred HHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 740 AVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL---DEN-YTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 740 Ai~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l---dP~-~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
|+..|++++.+. |..+.+|..+|.++..+|++++|+..|++++.. .|+ ...+|..++..+...|++++|...
T Consensus 188 A~~~~~~al~~~----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 188 AFKIFELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998 678899999999999999999999999999995 554 788999999999999999999999
Q ss_pred HHHHHHHhhhhH
Q 002199 816 LQRLVSILENQS 827 (954)
Q Consensus 816 ~ekAL~l~p~~~ 827 (954)
++++++++|++.
T Consensus 264 ~~~a~~~~p~~~ 275 (308)
T 2ond_A 264 EKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHccccc
Confidence 999999999865
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=6.8e-17 Score=182.93 Aligned_cols=257 Identities=10% Similarity=0.006 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN-- 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~-- 524 (954)
....++.+|..++..|+|++|+.+|++|+.+.+... .....+.+++++|.+|..+|++++|+..+++|+++.+.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 175 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS----DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP 175 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC----ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC
Confidence 344678899999999999999999999999865432 12345789999999999999999999999999987542
Q ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 525 -----FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 525 -----~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
...++..+|.+|..+|++++|+.+|++++.+.+.. ++.
T Consensus 176 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------------------------~~~---- 218 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---------------------------------QND---- 218 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------------------TCH----
T ss_pred CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---------------------------------CCH----
Confidence 35688999999999999999999999998864321 000
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+....++..+|.+|..+|++++|+.++++++.+.+.... +.. ..++..+|.+|..
T Consensus 219 -------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~-~~~~~~la~~~~~ 273 (378)
T 3q15_A 219 -------------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-----------DLL-PKVLFGLSWTLCK 273 (378)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-----------GGH-HHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-----------hhH-HHHHHHHHHHHHH
Confidence 012346788999999999999999999999996543211 011 2378899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccCCch
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR---YTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~---~eeAi~~y~kAL~l~~~~~p 756 (954)
+|++++|+.++++++.+.+....... ...+..++.++...++ +.+|+.++++.- ..+
T Consensus 274 ~g~~~~A~~~~~~al~~~~~~~~~~~---------------~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-----~~~ 333 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHITARSHKFY---------------KELFLFLQAVYKETVDERKIHDLLSYFEKKN-----LHA 333 (378)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTCCSCH---------------HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-----CHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHH---------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-----Chh
Confidence 99999999999999998765433111 0123446777888888 888888887731 226
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
....++..+|.+|..+|++++|+.+|++++++.
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999998764
No 75
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=2.5e-17 Score=192.07 Aligned_cols=312 Identities=13% Similarity=-0.010 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-----CHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNL---TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-----RMREALEDCMM 517 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y---~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-----~~eeAl~~~~k 517 (954)
..+++++.+|..|+..|++ ++|+..|+++++. ++ .+++++|.++...+ ++++|+..|++
T Consensus 33 g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~----------~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~ 99 (452)
T 3e4b_A 33 GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SP----------RAQARLGRLLAAKPGATEAEHHEAESLLKK 99 (452)
T ss_dssp TCCTGGGTCC-----------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CH----------HHHHHHHHHHHhCCCCCCcCHHHHHHHHHH
Confidence 4566788899999999988 9999999999977 33 67899999777766 88999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh-hhhhHHH--------------HHHHHHHHHHH--HhHH
Q 002199 518 AATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA-VCLDRRI--------------TIEAADGLQKA--QKVT 580 (954)
Q Consensus 518 ALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~-~~~~~~~--------------~~ea~~~l~~~--~~~~ 580 (954)
+++.. ++.+++.||.+|...+...++...++......+. +...... ...+...+..+ ....
T Consensus 100 Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~ 177 (452)
T 3e4b_A 100 AFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI 177 (452)
T ss_dssp HHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT
T ss_pred HHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH
Confidence 99854 4458999999999887765544444333332211 1111100 01111111111 1244
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHhchhhhhhhhhhhhc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML----RKYEEAIQLCEHTLPVAEKNFASVLAD 656 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l----g~~eeAi~~~ekaL~l~p~~~~~~~~~ 656 (954)
.++.++..+...|...+..+|+..|+++....|.....++.+|.+|... +++++|+.+|+++. |.+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~----- 249 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA----- 249 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH-----
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH-----
Confidence 6788888888888665666999999999999999999999999999776 79999999999998 55543
Q ss_pred cCcchhhHHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 657 NGSVTYSLARLWRWRLISKS-Y--FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK 733 (954)
Q Consensus 657 ~~~~~~~~~~l~a~~~Lg~~-y--~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~ 733 (954)
+++.||.+ | ...+++++|+.+|+++.... + ..++..+|.+|.
T Consensus 250 ------------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~--------------------~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 250 ------------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--Q--------------------PRAELLLGKLYY- 294 (452)
T ss_dssp ------------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--C--------------------HHHHHHHHHHHH-
T ss_pred ------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--C--------------------HHHHHHHHHHHH-
Confidence 67889998 4 57899999999999998653 1 246777899988
Q ss_pred cC-----CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 734 SG-----RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 734 ~g-----~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
.| ++++|+.+|++|+ +.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+.+|.+|.
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS 365 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHh-------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence 55 9999999999998 2367899999999887 4499999999999987 467889999999998
Q ss_pred H----hcCHHHHHHHHHHHHHHhh
Q 002199 805 M----IRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 805 ~----lg~~eeAi~~~ekAL~l~p 824 (954)
. ..++.+|+.+|+++.+.-+
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred hCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 5699999999999988743
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=6.4e-17 Score=176.95 Aligned_cols=243 Identities=14% Similarity=-0.003 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHH
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN------FLKVYMRAAKCH 536 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~------~~~a~~~LA~iy 536 (954)
+|++|+.+|.++ |.+|..+|+|++|+..|.+++++.+. ...++..+|.+|
T Consensus 32 ~~~~A~~~~~~a------------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~ 87 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF 87 (292)
T ss_dssp HHHHHHHHHHHH------------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 478888777765 44567889999999999999988532 267899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCH
Q 002199 537 LVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSE 616 (954)
Q Consensus 537 ~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~ 616 (954)
..+|++++|+.+|++++.+.|.. +++.. ..
T Consensus 88 ~~~g~~~~A~~~~~~Al~l~~~~---------------------------------g~~~~-----------------~a 117 (292)
T 1qqe_A 88 KSGGNSVNAVDSLENAIQIFTHR---------------------------------GQFRR-----------------GA 117 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT---------------------------------TCHHH-----------------HH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHc---------------------------------CCHHH-----------------HH
Confidence 99999999999999999875531 22221 12
Q ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 617 KLLEMKADALYML-RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 617 ~~~~~lA~~~~~l-g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
.++..+|.+|... |++++|+.+|++++++.|.... .......+..+|.+|..+|++++|+.+|++++.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-----------VALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-----------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567899999996 9999999999999999886421 011122578899999999999999999999999
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch-hhHHHHHHHHHHHH--Hh
Q 002199 696 VGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP-FAAICFCNRAAALQ--AL 772 (954)
Q Consensus 696 l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p-~~a~~~~~lA~~y~--~l 772 (954)
+.|....... .....+..+|.++...|++++|+.+|++++.++|.... .....+..++.++. ..
T Consensus 187 ~~~~~~~~~~-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 187 SSMGNRLSQW-------------SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp TTSSCTTTGG-------------GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHhcCCcccH-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9887654210 11235677899999999999999999999999864322 22334556666664 45
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 773 GQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 773 g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+++++|+..|++++.++|.+...+..+-..+
T Consensus 254 ~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp TTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 7899999999999999998776666555444
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=6.3e-17 Score=167.87 Aligned_cols=172 Identities=13% Similarity=0.027 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHH----------------HHHHHHHcCCHHH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSN----------------RAATRISLGRMRE 510 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~----------------lA~~y~~lg~~ee 510 (954)
.++.+..+|..++..|+|++|+.+|++++.++|++. .+|+. +|.+|..+|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT----------EMYYWTNVDKNSEISSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH----------HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----------HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHH
Confidence 356789999999999999999999999999999986 78888 9999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002199 511 ALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLL 590 (954)
Q Consensus 511 Al~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll 590 (954)
|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++ ...++.++..++
T Consensus 73 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------------------~~a~~~lg~~~~ 133 (208)
T 3urz_A 73 AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------------------LAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 455677777776
Q ss_pred HhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 591 EQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 591 ~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
..+... ...++..+.+++...| ....++.+|.++..+|+|++|+..|++++++.|+.
T Consensus 134 ~~~~~~-~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQE-KKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHH-HHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHH-HHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 655432 1245666666654333 23467788999999999999999999999999965
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=3.3e-16 Score=155.55 Aligned_cols=171 Identities=17% Similarity=0.145 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 615 ~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
...++..+|.++...|++++|+..+++++...|.+.. .+..+|.++...|++++|+.++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD-----------------VALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567888999999999999999999999999886633 67889999999999999999999999
Q ss_pred hhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC
Q 002199 695 QVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 695 ~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
...|.... .+..+|.++...|++++|+.+|++++... |....++..+|.++..+|+
T Consensus 70 ~~~~~~~~--------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 70 ADAPDNVK--------------------VATVLGLTYVQVQKYDLAVPLLIKVAEAN----PINFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HHCTTCHH--------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC
T ss_pred hcCCCCHH--------------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcC----cHhHHHHHHHHHHHHHcCc
Confidence 99876533 45678999999999999999999999998 6778899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 775 IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+++|+..+++++.+.|.++.++..+|.++..+|++++|+.+|++++++.|++
T Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 126 FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999999999997764
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.72 E-value=3.8e-17 Score=200.35 Aligned_cols=188 Identities=9% Similarity=-0.051 Sum_probs=167.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGI--------NSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDC 515 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL--------~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~ 515 (954)
.|....+++..| +..|++++|+..|++++ +.+|.+. .+++.+|.+|+.+|++++|+..|
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~----------~~~~~~a~~~~~~g~~~~A~~~~ 456 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV----------ELPLMEVRALLDLGDVAKATRKL 456 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS----------HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch----------hHHHHHHHHHHhcCCHHHHHHHH
Confidence 344555566655 88999999999999999 8999987 89999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 516 MMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 516 ~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
+++++++|++..+|+.+|.+|..+|++++|+..|+++++++|++ ...++.++..+...|++
T Consensus 457 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------------------~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 457 DDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-------------------LAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------------------SHHHHHHHHHHHHHTCC
T ss_pred HHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------hHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999999999999999999999986 56678899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 596 EAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
+ + +..|++++.++|.++.+++.+|.+|..+|++++|+..|+++++++|.+.. +|+.+|.
T Consensus 518 ~---~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-----------------a~~~~~~ 576 (681)
T 2pzi_A 518 D---E-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTT-----------------ARLTSAV 576 (681)
T ss_dssp C---T-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHH-----------------HHHHHHH
T ss_pred H---H-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHH-----------------HHHHHHH
Confidence 9 7 88999999999999999999999999999999999999999999998755 7888999
Q ss_pred HHHHcCCHH
Q 002199 676 SYFCIGKLE 684 (954)
Q Consensus 676 ~y~~lG~~e 684 (954)
+|+..++++
T Consensus 577 ~~~~~~~~~ 585 (681)
T 2pzi_A 577 TLLSGRSTS 585 (681)
T ss_dssp HTC------
T ss_pred HHHccCCCC
Confidence 988766633
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.71 E-value=4.9e-16 Score=154.26 Aligned_cols=173 Identities=13% Similarity=0.035 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
..+..+..+|..++..|++++|+.+|++++...|.+. .++..+|.++...|++++|+..+++++++.|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----------DVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4577899999999999999999999999999999886 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
..++..+|.++...|++++|+..|++++...|.+ ...++.++..+...|+++ +|+..+
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~~~~---~A~~~~ 133 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-------------------FNVRFRLGVALDNLGRFD---EAIDSF 133 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-------------------HHHHHHHHHHHHHcCcHH---HHHHHH
Confidence 9999999999999999999999999999998865 345677888899999999 889999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
.+++...|.++.++..+|.++...|++++|+..+++++++.|.+.
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999999999999999999999999999998764
No 81
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=5.4e-15 Score=184.90 Aligned_cols=299 Identities=15% Similarity=0.127 Sum_probs=208.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-Cc---ccccCCc--------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPL-SE---TAGCCIK--------PLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~-~~---~~~~~~~--------~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
.|..+...|.|++|..+|+++-...-. +. ..+.+.+ ....+|+++|.++...|++++|+..|.+|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 488999999999999888775311100 00 0000000 12478999999999999999999999886
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
+++.+|.++|.++..+|+|++|+++|..+.+..++...+. .++..|.+.+++++
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--------------------~LafaYAKl~rlee---- 1185 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--------------------ELIFALAKTNRLAE---- 1185 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--------------------HHHHHHHhhcCHHH----
Confidence 7888999999999999999999999999988765432111 24444445555542
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
++.| + ..++. ..+..+|..+...|+|++|+.+|.++- .|..++.+|..+|
T Consensus 1186 le~f---I-~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~-------------------------ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1186 LEEF---I-NGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS-------------------------NFGRLASTLVHLG 1235 (1630)
T ss_pred HHHH---H-hCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh-------------------------HHHHHHHHHHHhC
Confidence 2222 1 13333 445568888888888888888887751 3566788888888
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHH-----HHHHH-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESS-----MSLAG-----TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~-----~~l~~-----~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
++++|++.++++... ..+..+...+ ..+.. .......+..++..|...|.|++||.+|+++|.++
T Consensus 1236 e~q~AIEaarKA~n~-----~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1236 EYQAAVDGARKANST-----RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred CHHHHHHHHHHhCCH-----HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 888888888877332 1111000000 01111 11122345567888999999999999999999998
Q ss_pred cCCchhhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 752 IESRPFAAICFCNRAAALQA--LGQIADAIADCSLAMALDE-----NYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 752 ~~~~p~~a~~~~~lA~~y~~--lg~~eeAi~~~ekAL~ldP-----~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
+.+...+..+|.+|.+ -++..++++.|...+.+.| ..+..|..+..+|.+-|+|+.|+..+-...
T Consensus 1311 ----raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1311 ----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred ----hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 7888889888888875 4588999999999888877 788899999999999999999997655443
No 82
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.69 E-value=3.6e-15 Score=164.20 Aligned_cols=243 Identities=9% Similarity=0.004 Sum_probs=161.1
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002199 456 NQAYKNNNL-TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG--RMREALEDCMMAATVDPNFLKVYMRA 532 (954)
Q Consensus 456 ~~~~~~g~y-~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg--~~eeAl~~~~kALel~P~~~~a~~~L 532 (954)
...++.|.+ ++|+.++.++|.++|.+. .+|+.++.++..++ ++++++..+.++|.++|++..+|..+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~----------taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R 109 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHY----------TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYR 109 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHH----------HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 344556666 589999999999999998 99999999999999 99999999999999999999999999
Q ss_pred HHHH----HHc---CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 533 AKCH----LVL---GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 533 A~iy----~~l---G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
+.++ ..+ +++++++..+.++++.+|.
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk----------------------------------------------- 142 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPK----------------------------------------------- 142 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-----------------------------------------------
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-----------------------------------------------
Confidence 9998 666 5666666666666665554
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC-
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYE--EAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK- 682 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~e--eAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~- 682 (954)
+..+|..++.++..++.++ ++++.+.++++.+|.+.. +|..++.++...+.
T Consensus 143 ---------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s-----------------AW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 143 ---------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS-----------------AWSHRFFLLFSKKHL 196 (306)
T ss_dssp ---------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHSSGGG
T ss_pred ---------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHhcccc
Confidence 4444444455555555444 555555555555555544 44444555554444
Q ss_pred -----HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhccCCch
Q 002199 683 -----LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE-AVEHYTVALSTNIESRP 756 (954)
Q Consensus 683 -----~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee-Ai~~y~kAL~l~~~~~p 756 (954)
++++++++.+++.++|.+.. +|..++.++...|+... +..++.+++.+.. ..+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~n~S--------------------aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~ 255 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQNPS--------------------TWNYLLGIHERFDRSITQLEEFSLQFVDLEK-DQV 255 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCHH--------------------HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-TEE
T ss_pred chhhhHHHHHHHHHHHHHhCCCCcc--------------------HHHHHHHHHHhcCCChHHHHHHHHHHHhccC-CCC
Confidence 55555555555555555533 34444445555554333 3334444444431 125
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMA-LDENYTKAVSRRAAL 802 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~-ldP~~~~al~~lA~l 802 (954)
....++..+|.+|.++|+.++|++.|+.+++ +||-....|..++..
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 5666777777777777777777777777775 677777776666543
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.69 E-value=2.2e-15 Score=157.93 Aligned_cols=191 Identities=9% Similarity=-0.009 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
++.++.+|..++..|+|++|+..|++++...|.++ ....+++.+|.+|+.+|++++|+..|+++++++|++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 56789999999999999999999999999999864 12368999999999999999999999999999998754
Q ss_pred ---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002199 528 ---VYMRAAKCHLV------------------LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCS 586 (954)
Q Consensus 528 ---a~~~LA~iy~~------------------lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a 586 (954)
+++.+|.++.. +|++++|+..|+++++..|+..........+...... .....+.++
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~--~~~~~~~~a 154 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR--LAKYEYSVA 154 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 89999999987 5799999999999999999875443222221111111 123346778
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSCSE---KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~---~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
..++..|++. +|+..|++++...|.++ .++..+|.++..+|++++|+..++.++...|++.
T Consensus 155 ~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 155 EYYTERGAWV---AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHTCHH---HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHcCcHH---HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 8899999999 89999999999999886 6899999999999999999999999988888664
No 84
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.69 E-value=2.7e-15 Score=165.29 Aligned_cols=231 Identities=9% Similarity=0.005 Sum_probs=197.8
Q ss_pred HHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh
Q 002199 502 RISLGRM-REALEDCMMAATVDPNFLKVYMRAAKCHLVLG--EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK 578 (954)
Q Consensus 502 y~~lg~~-eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG--~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~ 578 (954)
.+..|.+ ++|+..+.++|.++|++..+|..++.++..++ ++++++..+..+|.++|.+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~------------------- 102 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN------------------- 102 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-------------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-------------------
Confidence 3444444 68999999999999999999999999999999 9999999999999999976
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHhchhhhhhhh
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADAL----YML---RKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~----~~l---g~~eeAi~~~ekaL~l~p~~~~ 651 (954)
...| ..++.++ ..+ +++++++.++.+++..+|+++.
T Consensus 103 y~aW-------------------------------------~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~ 145 (306)
T 3dra_A 103 YQIW-------------------------------------NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH 145 (306)
T ss_dssp CHHH-------------------------------------HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH
T ss_pred HHHH-------------------------------------HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH
Confidence 2222 2222222 333 6789999999999999999976
Q ss_pred hhhhccCcchhhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 652 SVLADNGSVTYSLARLWRWRLISKSYFCIG--KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG--~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~ 729 (954)
+|..++.++..++ +..+++.++.+++..+|.+.. +|..++.
T Consensus 146 -----------------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s--------------------AW~~R~~ 188 (306)
T 3dra_A 146 -----------------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS--------------------AWSHRFF 188 (306)
T ss_dssp -----------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH--------------------HHHHHHH
T ss_pred -----------------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH--------------------HHHHHHH
Confidence 7888888888777 488999999999999999999 5666778
Q ss_pred HHHHcCC------HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhC---CCCHHHHHHH
Q 002199 730 EAFKSGR------YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD-AIADCSLAMALD---ENYTKAVSRR 799 (954)
Q Consensus 730 ~~~~~g~------~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ee-Ai~~~ekAL~ld---P~~~~al~~l 799 (954)
++...+. +++++++++++|.++ |.+..+|++++.++...|+..+ ...++.+++.++ |..+.++..+
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~----p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKC----PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 8888787 999999999999999 8889999999999999998555 556888888877 8899999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH-HhhhhHHH
Q 002199 800 AALHEMIRDYTQAASDLQRLVS-ILENQSAE 829 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~-l~p~~~~~ 829 (954)
|.+|.++|+.++|+++|+.+.+ ++|-....
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999997 89877653
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=1.4e-16 Score=156.57 Aligned_cols=147 Identities=14% Similarity=0.035 Sum_probs=128.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002199 621 MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSIS 700 (954)
Q Consensus 621 ~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~ 700 (954)
.||.++...|++++|+..+++++...|.+.. .++.+|.+|+..|++++|+.+|+++++++|.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~-----------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~ 64 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI-----------------KGFYFAKLYYEAKEYDLAKKYICTYINVQERD 64 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHT-----------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4688888899999999999999999987754 67889999999999999999999999999987
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 701 DRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 701 ~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
.. ++..+|.++...|++++|+.+|+++++++ |.++.+++++|.+|..+|++++|+.
T Consensus 65 ~~--------------------a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 65 PK--------------------AHRFLGLLYELEENTDKAVECYRRSVELN----PTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HH--------------------HHHHHHHHHHHcCchHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHH
Confidence 54 67789999999999999999999999999 7888999999999999999988776
Q ss_pred H-HHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 781 D-CSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 781 ~-~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
. +++|++++|+++.++..++.++...|+
T Consensus 121 ~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 121 YWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 5 589999999999999999999988775
No 86
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.68 E-value=6.2e-16 Score=147.49 Aligned_cols=108 Identities=28% Similarity=0.442 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|+.+++++.+|+.+++.|+|++|+.+|+++|+++|.+. .+|+++|.+|+.+|++++|+.+|+++|+++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 77 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----------ILYSNRAACLTKLMEFQRALDDCDTCIRLD 77 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHhhHHHhhccHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|+++.+|+.+|.+|..+|++++|+..|+++++++|++.
T Consensus 78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999999999999999999873
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.68 E-value=3.1e-15 Score=156.88 Aligned_cols=207 Identities=12% Similarity=-0.053 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~e 568 (954)
+..++.+|..++..|+|++|+..|++++...|.. ..+++.+|.+|..+|++++|+..|+++++..|++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------- 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------- 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-------
Confidence 3789999999999999999999999999998876 478999999999999999999999999998886421
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 569 a~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
.+.+++.+|.++..++.. + +
T Consensus 77 ----------------------------------------------~~~a~~~~g~~~~~~~~~--~---~--------- 96 (225)
T 2yhc_A 77 ----------------------------------------------IDYVMYMRGLTNMALDDS--A---L--------- 96 (225)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHC-----------------
T ss_pred ----------------------------------------------HHHHHHHHHHHHHhhhhh--h---h---------
Confidence 112344444444443321 0 0
Q ss_pred hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 649 NFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG 728 (954)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG 728 (954)
..+..++.++...|++++|+..|++++...|.+...... ...++
T Consensus 97 -------------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a-----------------~~~l~ 140 (225)
T 2yhc_A 97 -------------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA-----------------TKRLV 140 (225)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH-----------------HHHHH
T ss_pred -------------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH-----------------HHHHH
Confidence 012234555555666677777777777766665441100 00000
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 002199 729 NEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT---KAVSRRAALHEM 805 (954)
Q Consensus 729 ~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~---~al~~lA~ly~~ 805 (954)
.+. .........+|.+|...|++++|+..|+++++..|+++ .+++.+|.+|..
T Consensus 141 ~~~------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 141 FLK------------------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp HHH------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHH------------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 000 01112234566677777777777777777777777664 567777777777
Q ss_pred hcCHHHHHHHHHHHHHHhhh
Q 002199 806 IRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 806 lg~~eeAi~~~ekAL~l~p~ 825 (954)
+|++++|+..+++++...|+
T Consensus 197 ~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 197 MQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp TTCHHHHHHHHHHHHHCCSC
T ss_pred cCCcHHHHHHHHHHHhhCCC
Confidence 77777777777766666443
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.5e-15 Score=157.41 Aligned_cols=186 Identities=12% Similarity=0.001 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 615 ~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
++..++.+|..++..|++++|+..|++++.++|++........... ........++.+|.+|...|++++|+..|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDK-NSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcc-hhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556777888888888888888888888888887754110000000 000000012339999999999999999999999
Q ss_pred hhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC
Q 002199 695 QVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 695 ~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
+++|.+.. .+..+|.+++..|++++|+.+|++++.++ |.++.+++++|.+|..+++
T Consensus 82 ~~~p~~~~--------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 82 QKAPNNVD--------------------CLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHCTTCHH--------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHhH
Confidence 99998744 67789999999999999999999999999 7889999999999987764
Q ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 775 --IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 775 --~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
...++..+.+++...| ...+++.+|.++..+|+|++|+.+|++++++.|+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5667778888765433 23478899999999999999999999999997753
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.67 E-value=2.1e-14 Score=161.30 Aligned_cols=260 Identities=13% Similarity=-0.025 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFL-----KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT 566 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~-----~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~ 566 (954)
..++..+|.+++..|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------ 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------ 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC------
Confidence 57888999999999999999999999999887542 3678899999999999999999999998755320
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 567 IEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 567 ~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
... ....++..+|.++...|++++|+..+++++.+.
T Consensus 88 ---------------------------~~~-----------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 88 ---------------------------VWH-----------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 123 (373)
T ss_dssp ---------------------------CHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------cHH-----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 000 012356788999999999999999999999987
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
+..... ......+.+..+|.+|...|++++|+.++++++.+.+...... .+..+..
T Consensus 124 ~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~ 179 (373)
T 1hz4_A 124 NEQHLE---------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ---------------QLQCLAM 179 (373)
T ss_dssp HHTTCT---------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG---------------GHHHHHH
T ss_pred HHhccc---------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH---------------HHHHHHH
Confidence 643210 0011223677899999999999999999999999877643211 1235667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCCc-hhhHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIESR-PFAAIC--FCNRAAALQALGQIADAIADCSLAMALDENY----TKAVSRR 799 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~~~-p~~a~~--~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~----~~al~~l 799 (954)
+|.++...|++++|+.++++++.+.+... +..... ...++.++...|++++|+..+++++...|.. ..++..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 89999999999999999999998743211 111122 2245566889999999999999999877653 3467889
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
|.++...|++++|+..+++++.+.+.
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998664
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=6.9e-16 Score=164.09 Aligned_cols=175 Identities=15% Similarity=0.041 Sum_probs=139.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHH
Q 002199 459 YKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV--------DPNFLKVYM 530 (954)
Q Consensus 459 ~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--------~P~~~~a~~ 530 (954)
...|++++|+.+|++|+++..... +......+.++..+|.+|..+|++++|+..|++++++ .|....++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 346788888888888888542110 0001234689999999999999999999999999988 466788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHh
Q 002199 531 RAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610 (954)
Q Consensus 531 ~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~ 610 (954)
.+|.+|..+|++++|+.+|++++.+....... ........+..++..+...|+++ +|+..+.+++.
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 155 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-----------FHPDVAKQLNNLALLCQNQGKAE---EVEYYYRRALE 155 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHHTTTCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC-----------CChHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHH
Confidence 99999999999999999999999873211000 00112556788899999999999 78888888888
Q ss_pred c--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 611 I--------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 611 ~--------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
+ .|....++..+|.++..+|++++|+.++++++.+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 7 67778899999999999999999999999999987654
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.67 E-value=9e-17 Score=157.99 Aligned_cols=147 Identities=9% Similarity=-0.050 Sum_probs=131.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA 532 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L 532 (954)
.+|..+..+|++++|+..|++++...|.++ ..++.+|.+|+.+|+|++|++.|+++|+++|+++.+|+.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~----------~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 71 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS----------IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFL 71 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH----------TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 368888899999999999999999999876 7899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH-HHHHHhc
Q 002199 533 AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER-INEALSI 611 (954)
Q Consensus 533 A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~-l~kaL~~ 611 (954)
|.+|..+|++++|+..|+++++++|.+ ...++.++..+...++++ +|+.. +++++++
T Consensus 72 g~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~~~~~---~aa~~~~~~al~l 129 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYRRSVELNPTQ-------------------KDLVLKIAELLCKNDVTD---GRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHHCSSS---SHHHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCChH---HHHHHHHHHHHHh
Confidence 999999999999999999999999986 566888999999999987 45554 5899999
Q ss_pred CCCCHHHHHHHHHHHHHccC
Q 002199 612 SSCSEKLLEMKADALYMLRK 631 (954)
Q Consensus 612 ~P~~~~~~~~lA~~~~~lg~ 631 (954)
+|.++.++..++.++...|+
T Consensus 130 ~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 130 FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp STTCHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999988875
No 92
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=1.4e-14 Score=181.33 Aligned_cols=313 Identities=10% Similarity=-0.011 Sum_probs=168.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~ 530 (954)
.-.....|...|.+.+|+++|++++ +.|..-. .......+..+..+....++..+.+..+.+.+ .-
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs----~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d---------~~ 1053 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIV-LDNSVFS----EHRNLQNLLILTAIKADRTRVMEYINRLDNYD---------AP 1053 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHH-cCCCccc----ccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc---------HH
Confidence 3445667789999999999999999 5555110 01112333444455554555555555444332 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhchhh--hh-hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 531 RAAKCHLVLGEIENAQHYYHKLLNSAAAV--CL-DRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 531 ~LA~iy~~lG~~eeAl~~yekaL~l~P~~--~~-~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
.+|.++..+|.|++|...|+++-...-.. .. ......++.....+......|+.+|..+...|+++ +|+..|.+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~k---EAIdsYiK 1130 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVK---EAIDSYIK 1130 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHH---HHHHHHHh
Confidence 37899999999999999999974221100 00 01112222222233333455666666666666666 45555544
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhh-----hhccCcchh-----hHHHHHHHHHHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASV-----LADNGSVTY-----SLARLWRWRLISKSY 677 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~-----~~~~~~~~~-----~~~~l~a~~~Lg~~y 677 (954)
+ +++..+..+|.++..+|+|++|+++|..+++..+...... ......... .......|..+|..+
T Consensus 1131 A-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1131 A-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRC 1205 (1630)
T ss_pred c-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 5566666666666666666666666666665543320000 000000000 000001233344444
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...|+|++|+.+|.++ ..|..+|.+|.+.|++++|++.+++|.
T Consensus 1206 e~eg~YeeA~~~Y~kA----------------------------~ny~rLA~tLvkLge~q~AIEaarKA~--------- 1248 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV----------------------------SNFGRLASTLVHLGEYQAAVDGARKAN--------- 1248 (1630)
T ss_pred HhcCCHHHHHHHHHhh----------------------------hHHHHHHHHHHHhCCHHHHHHHHHHhC---------
Confidence 4444444444444443 123334555555555555555555541
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+..+|...+.++...|+|..|..+... +.. +++.+..++..|...|.|++|+..|+++|.+.+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 124455555555555555555554432 322 34455688889999999999999999999996544
No 93
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.66 E-value=1.6e-15 Score=167.02 Aligned_cols=243 Identities=15% Similarity=0.032 Sum_probs=182.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS-LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV 538 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~-lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~ 538 (954)
..|+|.+|+.+++++.+..+... +. .+++++|+..|.++ |.+|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~--------------------~~~~~~~~~A~~~~~~a--------------~~~~~~ 48 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF--------------------MKWKPDYDSAASEYAKA--------------AVAFKN 48 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS--------------------SSCSCCHHHHHHHHHHH--------------HHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc--------------------cCCCCCHHHHHHHHHHH--------------HHHHHH
Confidence 46789999999999998876421 11 48899999988876 678889
Q ss_pred cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHH
Q 002199 539 LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKL 618 (954)
Q Consensus 539 lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~ 618 (954)
+|++++|+.+|.+++.+.+.. ++.. . ...+
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~---------------------------------~~~~---~--------------~a~~ 78 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANN---------------------------------RSLF---H--------------AAKA 78 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT---------------------------------TCHH---H--------------HHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHc---------------------------------CCHH---H--------------HHHH
Confidence 999999999999998864421 1111 1 1235
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 619 ~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
+..+|.+|..+|++++|+.+|++++.+.+.... ......++..+|.+|.. |++++|+.+|++++.+.+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-----------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999988754311 11122367889999998 999999999999998755
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc--hhhHHHHHHHHHHHHHhcCHH
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR--PFAAICFCNRAAALQALGQIA 776 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~--p~~a~~~~~lA~~y~~lg~~e 776 (954)
.... .......+.++|.+|...|+|++|+.+|++++.+.+... +....++.++|.++..+|+++
T Consensus 147 ~~~~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 147 NEER--------------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hCCC--------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 3322 112345678899999999999999999999999875332 234568899999999999999
Q ss_pred HHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCHHHHHH
Q 002199 777 DAIADCSLAMALDENYTK-----AVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 777 eAi~~~ekAL~ldP~~~~-----al~~lA~ly~~lg~~eeAi~ 814 (954)
+|+.+|++++ ++|.+.. .+..++.++ ..++.+.+..
T Consensus 213 ~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 213 AAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999999 9997643 334444444 4566544433
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.66 E-value=1.6e-15 Score=161.25 Aligned_cols=247 Identities=14% Similarity=0.010 Sum_probs=165.3
Q ss_pred HcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH
Q 002199 504 SLGRMREALEDCMMAATV--------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK 575 (954)
Q Consensus 504 ~lg~~eeAl~~~~kALel--------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~ 575 (954)
..|++++|+..|++++++ .|..+.++..+|.+|..+|++++|+.+|++++.+...... -..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~ 81 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-----------KDH 81 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------TTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-----------Ccc
Confidence 457777788888777774 3667889999999999999999999999999987421000 000
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhh
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINEALSI--------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAE 647 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~--------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p 647 (954)
......+..++..+...|+++ +|+..+.+++.+ .|....++..+|.++..+|++++|+.++++++.+..
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYK---EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHH---HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 112456788899999999999 788888888877 466788999999999999999999999999999832
Q ss_pred hhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002199 648 KNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727 (954)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~l 727 (954)
.... ........++..+|.+|..+|++++|+.+|++++.+.+....... .......+..+
T Consensus 159 ~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~ 218 (283)
T 3edt_B 159 TRLG---------PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV-----------NGDNKPIWMHA 218 (283)
T ss_dssp HHSC---------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC-----------CSSCCCHHHHH
T ss_pred HhcC---------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHH
Confidence 2100 000111237889999999999999999999999986321100000 00000112223
Q ss_pred HHHHHHcCC------HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 728 GNEAFKSGR------YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 728 G~~~~~~g~------~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
+..+...+. +..++.++..+. ...|....++..+|.+|..+|++++|+.+|++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 219 EEREESKDKRRDSAPYGEYGSWYKACK----VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHTTCCCCC------------CCC----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333232 222322222222 223677777888888888888888888888887765
No 95
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.63 E-value=4e-15 Score=163.86 Aligned_cols=176 Identities=13% Similarity=0.033 Sum_probs=145.3
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
|.+|...|++++|+..|.+++.+.+.... .......+..+|.+|..+|++++|+.+|++++.+.+....
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 111 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRS-----------LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT 111 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 67889999999999999999999875421 1122346788999999999999999999999987543222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC--chhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 703 YGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES--RPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 703 ~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~--~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
....+..+.++|.+|.. |++++|+.+|++|+.+.+.. ......++.++|.+|..+|+|++|+.
T Consensus 112 --------------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 112 --------------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp --------------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 12334577889999998 99999999999999987532 23447899999999999999999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 781 DCSLAMALDENY------TKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 781 ~~ekAL~ldP~~------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+|++++.+.|.. ..+++.+|.++..+|++++|+.+|++++ +.|.
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 999999986543 3578889999999999999999999999 8664
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.61 E-value=8.3e-15 Score=139.65 Aligned_cols=106 Identities=30% Similarity=0.501 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
..+..+.++|..+++.|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+..|+++|+++|+++.+|+.
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 345678889999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+|.+|..+|++++|+.+|+++++++|++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 999999999999999999999999665544
No 97
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.61 E-value=2.1e-13 Score=151.17 Aligned_cols=164 Identities=10% Similarity=0.031 Sum_probs=146.7
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCC
Q 002199 456 NQAYKNNNLT-EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR----------MREALEDCMMAATVDPN 524 (954)
Q Consensus 456 ~~~~~~g~y~-eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~----------~eeAl~~~~kALel~P~ 524 (954)
....+.|+|+ +|+.++.++|.++|++. .+|+.++.++..++. +++++..+..+|..+|+
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~y----------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPDFA----------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTTCH----------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhH----------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 3445678887 79999999999999998 999999999998887 78999999999999999
Q ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh-HHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGE--IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS-EAASSA 601 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~--~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~-~~a~eA 601 (954)
+..+|..++.++..+++ +++++.++.++++++|.+ ...|..++..+...+.+ + ++
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------------------y~AW~~R~~vl~~l~~~~~---ee 164 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------------------FHCWDYRRFVAAQAAVAPA---EE 164 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCCHH---HH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhCcCHH---HH
Confidence 99999999999999995 999999999999999987 45566667666666663 5 79
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHhchhhhhhhh
Q 002199 602 LERINEALSISSCSEKLLEMKADALYML--------------RKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~l--------------g~~eeAi~~~ekaL~l~p~~~~ 651 (954)
++++.+++..+|.+..+|..++.++..+ +.++++++++.++|.++|.+..
T Consensus 165 l~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S 228 (331)
T 3dss_A 165 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 228 (331)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999988 5699999999999999999865
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=3.7e-15 Score=149.89 Aligned_cols=168 Identities=11% Similarity=0.069 Sum_probs=140.3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 613 SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK 692 (954)
Q Consensus 613 P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~k 692 (954)
|.....++.+|.+++..|++++|+..|+++++.+|++.. +++.+|.+|...|++++|+..|++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~~~~~g~~~~A~~~~~~ 65 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD-----------------VKLAKADCLLETKQFELAQELLAT 65 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH-----------------HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334456788999999999999999999999999998855 788999999999999999999999
Q ss_pred HHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH
Q 002199 693 LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE-AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 693 al~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~-~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~ 771 (954)
++...| ++... ...+.+ +...+...+|+..|++++.++ |.++.+++++|.++..
T Consensus 66 a~~~~p-~~~~~--------------------~~~~~~~~~~~~~~~~a~~~~~~al~~~----P~~~~~~~~la~~~~~ 120 (176)
T 2r5s_A 66 IPLEYQ-DNSYK--------------------SLIAKLELHQQAAESPELKRLEQELAAN----PDNFELACELAVQYNQ 120 (176)
T ss_dssp CCGGGC-CHHHH--------------------HHHHHHHHHHHHTSCHHHHHHHHHHHHS----TTCHHHHHHHHHHHHH
T ss_pred hhhccC-ChHHH--------------------HHHHHHHHHhhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 999888 53210 001111 112223346899999999999 7889999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 772 LGQIADAIADCSLAMALDENY--TKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~~--~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+|++++|+..|+++++++|+. ..++..+|.++..+|++++|+..|+++|..
T Consensus 121 ~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 121 VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999999999999999986 669999999999999999999999999864
No 99
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.60 E-value=2.3e-13 Score=150.94 Aligned_cols=237 Identities=13% Similarity=0.083 Sum_probs=187.5
Q ss_pred HcCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHH
Q 002199 504 SLGRMR-EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEY 582 (954)
Q Consensus 504 ~lg~~e-eAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~ 582 (954)
..|.+. +|+..+.++|.++|++..+|..++.++..++.. ..|+. .
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~~~~~-------------------~--- 86 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE------------KSPEE-------------------S--- 86 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------SCHHH-------------------H---
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------ccchh-------------------h---
Confidence 445554 799999999999999999999999998876542 11110 0
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRK--YEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~--~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
...+. +++..+..++..+|.+..+|..++.++..+++ +++++.++.++++.+|.++.
T Consensus 87 ---------~~~l~---~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~--------- 145 (331)
T 3dss_A 87 ---------AALVK---AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH--------- 145 (331)
T ss_dssp ---------HHHHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred ---------hHHHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH---------
Confidence 00011 67778888888999999999999999999884 89999999999999998865
Q ss_pred hhhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Q 002199 661 TYSLARLWRWRLISKSYFCIGK-LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS----- 734 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~-~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~----- 734 (954)
+|...+.++...|. ++++++++.+++..+|.+.. +|..++.++...
T Consensus 146 --------AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S--------------------AW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 146 --------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--------------------SWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp --------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH--------------------HHHHHHHHHHHHSCCC-
T ss_pred --------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH--------------------HHHHHHHHHHHhhhccc
Confidence 78888888888888 68999999999999988865 455566665555
Q ss_pred ---------CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHhCCCCHH
Q 002199 735 ---------GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL-----------GQIADAIADCSLAMALDENYTK 794 (954)
Q Consensus 735 ---------g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l-----------g~~eeAi~~~ekAL~ldP~~~~ 794 (954)
+.++++++++.+++.++ |.+..+|+.+..++... +.+++++..+.++++++|++..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~----P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 56899999999999999 77888887665555544 5689999999999999999977
Q ss_pred HHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhhhH
Q 002199 795 AVSRRAALHE---MIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 795 al~~lA~ly~---~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
.+..++.+.. ..+..++....|.++++++|-..
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 7666655433 35788999999999999976543
No 100
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=1.1e-14 Score=158.63 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..++.+|..++..|+|++|+.+|+++|..+|.+. .+|+++|.+|+.+|++++|+.+|+++++++|++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----------VYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 467899999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.+++.+|.+|..+|++++|+..|+++++++|++........ ....... ++.....
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~----------------~~~~~~~---------~~~~~~~ 127 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI----------------PSALRIA---------KKKRWNS 127 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH----------------HHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH----------------HHHHHHH---------HHHHHHH
Confidence 99999999999999999999999999999997532211000 0000000 1111111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc-CCHHH
Q 002199 607 EALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI-GKLEV 685 (954)
Q Consensus 607 kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-G~~ee 685 (954)
......|.+..+...++.++ .|++++|++.+++++++.|.+.. ....++.++... +.+++
T Consensus 128 ~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~~~~~~~ 188 (281)
T 2c2l_A 128 IEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGH-----------------IRAQQACIEAKHDKYMAD 188 (281)
T ss_dssp HHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHH-----------------HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhh-----------------hhhHHHHHHHHHHHHHHH
Confidence 22235566777777776654 79999999999999999987643 223344455544 77889
Q ss_pred HHHHHHHHHhh
Q 002199 686 ALDLLQKLEQV 696 (954)
Q Consensus 686 Al~~l~kal~l 696 (954)
|...|.++...
T Consensus 189 a~~~f~~a~~~ 199 (281)
T 2c2l_A 189 MDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHSSCT
T ss_pred HHHHHHhhhcc
Confidence 99999888663
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.59 E-value=1.2e-14 Score=158.68 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=155.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 612 SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQ 691 (954)
Q Consensus 612 ~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ 691 (954)
-|.+...++.+|..+...|++++|+..|++++..+|++.. +++.+|.+|...|++++|+..|+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE-----------------IGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh-----------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 3888999999999999999999999999999999998855 78899999999999999999999
Q ss_pred HHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH
Q 002199 692 KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 692 kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~ 771 (954)
+++..+|... ..+...+..+...++..+|+..|++++..+ |.+..+++++|.+|..
T Consensus 176 ~~~~~~p~~~--------------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~----P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 176 TIPLQDQDTR--------------------YQGLVAQIELLXQAADTPEIQQLQQQVAEN----PEDAALATQLALQLHQ 231 (287)
T ss_dssp TSCGGGCSHH--------------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred hCchhhcchH--------------------HHHHHHHHHHHhhcccCccHHHHHHHHhcC----CccHHHHHHHHHHHHH
Confidence 9999888321 123345666778889999999999999999 8889999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 772 LGQIADAIADCSLAMALDENY--TKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~~--~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.|++++|+..|.+++.++|++ ..++..++.++..+|+.++|+..|++++..
T Consensus 232 ~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 232 VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 999999999999999999999 899999999999999999999999999875
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.59 E-value=3.6e-14 Score=154.93 Aligned_cols=166 Identities=12% Similarity=0.044 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..++.+|..++..|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++..+|+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------------- 184 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------------- 184 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-------------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-------------
Confidence 7899999999999999999999999999999999999999999999999999999999999998853
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
....+..+..+...+... .|+..|++++..+|.++.+++.+|.+|...|++++|+..|+++++.+|.+...
T Consensus 185 ------~~~~~~~~~~l~~~~~~~---~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 185 ------RYQGLVAQIELLXQAADT---PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp ------HHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred ------HHHHHHHHHHHHhhcccC---ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 222344455566667777 68888999999999999999999999999999999999999999999976221
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
.++..++.+|..+|+.++|+..|++++.
T Consensus 256 ---------------~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 ---------------QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---------------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 1678899999999999999999999875
No 103
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.58 E-value=1e-15 Score=174.33 Aligned_cols=270 Identities=12% Similarity=0.085 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
.+.|..+|..+.+.|++++|++.|.++ .++ ..|...+.++..+|+|++|+.+++.+++..++ +.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~----------~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~ 95 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP----------SSYMEVVQAANTSGNWEELVKYLQMARKKARE-SY 95 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCH----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-ch
Confidence 369999999999999999999999774 233 67888999999999999999999999986444 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
+...++.+|.++|++.++.+.++. |. ...+...+..+...|.|+ +|+.+|.+
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~~-----pn--------------------~~a~~~IGd~~~~~g~ye---eA~~~Y~~ 147 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFING-----PN--------------------NAHIQQVGDRCYDEKMYD---AAKLLYNN 147 (449)
T ss_dssp -------------CHHHHTTTTTC-----C------------------------------------CTT---THHHHHHH
T ss_pred hHHHHHHHHHHhCCHHHHHHHHcC-----Cc--------------------HHHHHHHHHHHHHcCCHH---HHHHHHHH
Confidence 788899999999999998887752 32 236888899999999999 67777776
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
+ ..+..+|.++..+|+|++|++.++++. +| ..|.....++...|+++.|.
T Consensus 148 a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~--------------------~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 148 V--------SNFGRLASTLVHLGEYQAAVDGARKAN--ST--------------------RTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp T--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH--------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred h--------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc--------------------hhHHHHHHHHHHcCcHHHHH
Confidence 5 368899999999999999999999993 22 15777888999999999997
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
.+..... ..| . .+..+...|.+.|++++|+.+|++++.++ +....++..+|.
T Consensus 198 ~~~l~L~-~~a---d--------------------~l~~lv~~Yek~G~~eEai~lLe~aL~le----~ah~~~ftel~i 249 (449)
T 1b89_A 198 MCGLHIV-VHA---D--------------------ELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAI 249 (449)
T ss_dssp HTTTTTT-TCH---H--------------------HHHHHHHHHHHTTCHHHHHHHHHHHTTST----TCCHHHHHHHHH
T ss_pred HHHHHHH-hCH---h--------------------hHHHHHHHHHHCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHH
Confidence 6665421 221 1 12236778899999999999999999998 777888888988
Q ss_pred HHHH--hcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 768 ALQA--LGQIADAIADCSLAMALDE-----NYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 768 ~y~~--lg~~eeAi~~~ekAL~ldP-----~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
+|.+ .++..++++.|...+.+.| .++..|..+..+|...++|+.|+..+-..
T Consensus 250 l~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 250 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 8875 5689999999988888877 78889999999999999999999866443
No 104
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.57 E-value=1.4e-15 Score=170.09 Aligned_cols=200 Identities=17% Similarity=0.150 Sum_probs=163.9
Q ss_pred HHHHHHHH----HHhcCCCCHHHHHHHHHHHH------------HccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 600 SALERINE----ALSISSCSEKLLEMKADALY------------MLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 600 eAL~~l~k----aL~~~P~~~~~~~~lA~~~~------------~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
+|+..+.. ++.+.|.. ++..+|.... .++++++|+..|++++...|....
T Consensus 83 ~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~------------ 148 (336)
T 1p5q_A 83 RAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST------------ 148 (336)
T ss_dssp HHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH------------
T ss_pred HHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH------------
Confidence 66777777 77788876 4445554432 566777888888888877776543
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 664 LARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~ 743 (954)
++..+|.+|+..|++++|+.+|++++.+.|........ .........+..+.++|.+|+..|+|++|+.+
T Consensus 149 -----~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~-----~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 149 -----IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE-----EAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp -----HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChH-----HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78899999999999999999999999999987532111 11112233456788999999999999999999
Q ss_pred HHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHH
Q 002199 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA-ASDLQRLVSI 822 (954)
Q Consensus 744 y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA-i~~~ekAL~l 822 (954)
|++++.++ |.+..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 219 ~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 219 CNKALELD----SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 778999999999999999999999999999999999999999999999999999999 6688888877
Q ss_pred hhhhH
Q 002199 823 LENQS 827 (954)
Q Consensus 823 ~p~~~ 827 (954)
.+...
T Consensus 295 ~~~~~ 299 (336)
T 1p5q_A 295 LAEEE 299 (336)
T ss_dssp HHHHH
T ss_pred hhhcc
Confidence 66544
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.56 E-value=1.2e-14 Score=146.17 Aligned_cols=165 Identities=11% Similarity=-0.056 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
.+.+..+|..++..|++++|+..|+++++.+|++. .+++.+|.++..+|++++|+..|++++.++| ++.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----------~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----------DVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----------HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence 45678999999999999999999999999999997 9999999999999999999999999999999 887
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 528 VYMRAAKCHL-VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 528 a~~~LA~iy~-~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.+..++.+.. ..+...+|+..|+++++++|++ ...++.++..+...|+++ +|+..|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~-------------------~~~~~~la~~~~~~g~~~---~A~~~~~ 132 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDN-------------------FELACELAVQYNQVGRDE---EALELLW 132 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcccHH---HHHHHHH
Confidence 7776665543 3344556899999999999986 566888999999999999 8999999
Q ss_pred HHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 607 EALSISSCS--EKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 607 kaL~~~P~~--~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
+++..+|.. +.++..+|.++..+|++++|+..|+++|..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999875 669999999999999999999999988753
No 106
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.55 E-value=4.5e-14 Score=134.55 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..++.+.++..+|+.++++|+|++|+.+|++||+++|.+. .+|.++|.+|+.+|+|++|+.+|+++|+++
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~----------~~~~nlg~~~~~~~~~~~A~~~~~~al~~~ 72 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI----------TFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHhHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999999999999997 899999999999999999999999999998
Q ss_pred CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 523 PNF-------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 523 P~~-------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
|++ ..+|.++|.++..+|++++|+++|+++|...|+
T Consensus 73 ~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 73 RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 865 468999999999999999999999999998875
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.55 E-value=3.9e-14 Score=139.79 Aligned_cols=110 Identities=14% Similarity=0.062 Sum_probs=106.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|+.+++|+.+|..+++.|+|++|+.+|++++.++|.++ .+|+++|.+|..+|+|++|+..|++++
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~----------~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV----------DYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4456799999999999999999999999999999999999997 999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+++|+++.+|+.+|.+|..+|++++|+..|++++++.|+.
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999875
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.55 E-value=7.8e-14 Score=166.86 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=130.5
Q ss_pred ccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHH
Q 002199 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEIL 708 (954)
Q Consensus 629 lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l 708 (954)
.|++++|+..|++++++.|.+.. +|+.+|.+|...|++++|+.+|+++++++|.+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------ 58 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFV-----------------AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE------ 58 (568)
T ss_dssp -------------------CCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH------
T ss_pred CccHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence 47899999999999999997754 7889999999999999999999999999987643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 709 ESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 709 ~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
.+..+|.++...|++++|+.+|++++.++ |.+..+++++|.+|..+|++++|+..|++++++
T Consensus 59 --------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 59 --------------AVARLGRVRWTQQRHAEAAVLLQQASDAA----PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56779999999999999999999999999 778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHhhhhHH
Q 002199 789 DENYTKAVSRRAALHEMI---RDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 789 dP~~~~al~~lA~ly~~l---g~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+|++..++..+|.++..+ |++++|+..|++++++.|....
T Consensus 121 ~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 121 LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 999999999999999999 9999999999999999887543
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.54 E-value=5.4e-14 Score=168.27 Aligned_cols=159 Identities=8% Similarity=0.004 Sum_probs=132.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002199 461 NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLG 540 (954)
Q Consensus 461 ~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG 540 (954)
.|++++|+.+|+++++.+|.+. .+|+++|.+|..+|++++|+..|+++++++|++..+++.+|.+|..+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF----------VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp -------------------CCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 4789999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002199 541 EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLE 620 (954)
Q Consensus 541 ~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~ 620 (954)
++++|+.+|+++++++|.+ ...++.++..+...|+++ +|+..|++++.++|.+..++.
T Consensus 72 ~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~ 129 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEH-------------------PGIALWLGHALEDAGQAE---AAAAAYTRAHQLLPEEPYITA 129 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999975 456788899999999999 889999999999999999999
Q ss_pred HHHHHHHHc---cCHHHHHHHHHHhchhhhhhhh
Q 002199 621 MKADALYML---RKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 621 ~lA~~~~~l---g~~eeAi~~~ekaL~l~p~~~~ 651 (954)
.+|.++..+ |++++|+..|+++++..|....
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 999999999 9999999999999999997644
No 110
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.54 E-value=6.6e-14 Score=138.03 Aligned_cols=118 Identities=13% Similarity=0.021 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC--CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC--IKPLVLCYSNRAATRISLGRMREALEDCMMAATV- 521 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~--~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel- 521 (954)
...+..+..+|+.++..|+|++|+..|++||+++|+++..... ....+.+|.++|.++..+|+|++|+.+|++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999995321100 0012459999999999999999999999999999
Q ss_pred ------CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 522 ------DPNFLKVY----MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 522 ------~P~~~~a~----~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
+|++..+| +++|.++..+|++++|+.+|+++++++|++...
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999987543
No 111
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-13 Score=130.08 Aligned_cols=103 Identities=30% Similarity=0.425 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
|..++.|..+|..++..|+|++|+.+|+++|+++|.+. .+|.++|.+|+.+|++++|+..|+++++++|+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----------RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 35688999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
+..+++.+|.++..+|++++|+..|+++++++|
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999994
No 112
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.53 E-value=2.7e-13 Score=147.86 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 615 ~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
....+...+..++..|+|++|+..+.++++..+.... ....+..++.+|.++...|++++|+.+|++++
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-----------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-----------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-----------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3445667788999999999999999999987664321 11122345678999999999999999999999
Q ss_pred hhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---ccCCchhhHHHHHHHHHHHHH
Q 002199 695 QVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST---NIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 695 ~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l---~~~~~p~~a~~~~~lA~~y~~ 771 (954)
.+.+...... ..+.++..+|.+|...|+|++|+.+|++|+.+ .+........+++++|.+|..
T Consensus 143 ~~~~~~~~~~--------------~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 143 NQQLTGIDVY--------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp TTCCCSSCTT--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 8766543311 12457788999999999999999999999955 332222244799999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhhh
Q 002199 772 LGQIADAIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQA-ASDLQRLVSILEN 825 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeA-i~~~ekAL~l~p~ 825 (954)
+|+|++|+.+|++++.+.+. ...+++.+|.+|..+|++++| ..+|++++.+...
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999988543 278999999999999999999 8889999999654
No 113
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.53 E-value=1.6e-12 Score=144.77 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMAATVDP 523 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kALel~P 523 (954)
++..+++..+.......+..++|+.++.++|.++|++. .+|+.++.++..++ .+++++..+.++|..+|
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y----------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP 120 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY----------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL 120 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence 44455555555555556666899999999999999998 99999999999999 59999999999999999
Q ss_pred CcHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH-----
Q 002199 524 NFLKVYMRAAKCHLVL-G-EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE----- 596 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~l-G-~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~----- 596 (954)
++..+|..++.++..+ + +++++++.+.++|+++|.+ ...|..+...+...+.++
T Consensus 121 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------------------y~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 121 KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------------------YHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------------------HHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhccccccchh
Confidence 9999999999999998 8 9999999999999999987 333444444444433332
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-------HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHH
Q 002199 597 AASSALERINEALSISSCSEKLLEMKADALYMLRK-------YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWR 669 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~-------~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a 669 (954)
...++++.+.+++..+|.+..++..++.++..+++ ++++++++.++|.++|.+.. +
T Consensus 182 ~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S-----------------a 244 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS-----------------A 244 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH-----------------H
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH-----------------H
Confidence 23378999999999999999999999999999987 79999999999999999865 6
Q ss_pred HHHHHHHHHHcCCH
Q 002199 670 WRLISKSYFCIGKL 683 (954)
Q Consensus 670 ~~~Lg~~y~~lG~~ 683 (954)
|+.+..++...|..
T Consensus 245 W~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 245 WNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCC
Confidence 76666677666653
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.52 E-value=9.9e-15 Score=144.06 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..++.+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 4578889999999999999999999999999 888999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..+|++++|+.+|++++++.|+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999997654
No 115
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.52 E-value=9.9e-14 Score=136.79 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC--------chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES--------RPFAAICFCNRAAALQALGQIADAIADCSLAMAL- 788 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~--------~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l- 788 (954)
+..+..+.++|+.++..|+|++|+..|++||.++|.. .|.++.+|+++|.++..+|+|++|+.+|++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3456678889999999999999999999999999762 1345669999999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 789 ------DENYTKAV----SRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 789 ------dP~~~~al----~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+|++..+| +++|.++..+|++++|+.+|++++++.|++
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999 999999999999999999999999997654
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.51 E-value=1.2e-12 Score=145.78 Aligned_cols=235 Identities=12% Similarity=0.023 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE-IENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~-~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
.++..+..+....+..++|+..+.++|.++|++..+|..++.++..++. +++++..+.++|..
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---------------- 118 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---------------- 118 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------------
Confidence 3344444444445556789999999999999999999999999999884 77666666665554
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHhchhhhhh
Q 002199 572 GLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML-R-KYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 572 ~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l-g-~~eeAi~~~ekaL~l~p~~ 649 (954)
+|.+..+|..++.++..+ + ++++++.++.+++..+|.+
T Consensus 119 ----------------------------------------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN 158 (349)
T 3q7a_A 119 ----------------------------------------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN 158 (349)
T ss_dssp ----------------------------------------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC
T ss_pred ----------------------------------------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Confidence 555666777777777776 6 7778888888888888777
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE--------VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL 721 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e--------eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~ 721 (954)
+. +|..++.++...+.++ ++++++.++++.+|.+..
T Consensus 159 y~-----------------AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S------------------- 202 (349)
T 3q7a_A 159 YH-----------------TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS------------------- 202 (349)
T ss_dssp HH-----------------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH-------------------
T ss_pred HH-----------------HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH-------------------
Confidence 54 6666777776666666 999999999999998855
Q ss_pred HHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCH-------------------
Q 002199 722 LHHKSAGNEAFKSGR-------YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQI------------------- 775 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~-------~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~------------------- 775 (954)
+|..++.++...+. ++++++++.++|.++ |.+..+|+++..++...|+-
T Consensus 203 -AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~----P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 203 -AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI----PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp -HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred -HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 67778888888876 799999999999999 88889999988888887753
Q ss_pred -HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhh
Q 002199 776 -ADAIADCSLAMALD------ENYTKAVSRRAALHEMIRDYTQAASDLQRLV-SILE 824 (954)
Q Consensus 776 -eeAi~~~ekAL~ld------P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL-~l~p 824 (954)
.+-...+...+... +..+.++..++.+|...|+.++|++.|+.+. +.+|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 33444444433332 5678999999999999999999999999987 5544
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.51 E-value=5.6e-13 Score=144.05 Aligned_cols=228 Identities=11% Similarity=-0.012 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA-------AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRI 565 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L-------A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~ 565 (954)
.-++..|.-+ .-+++..|++.|.++++++|+...+|..+ +.++..++++.+++..+.+.+.+.|......
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~-- 84 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR-- 84 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE--
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh--
Confidence 4455666665 58999999999999999999999999999 8999999999999999999999988642110
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHhc
Q 002199 566 TIEAADGLQKAQKVTEYINCSGKLLE-QKTSEAASSALERINEALSIS-SCSEKLLEMKADALYMLRKYEEAIQLCEHTL 643 (954)
Q Consensus 566 ~~ea~~~l~~~~~~~~~l~~a~~ll~-~g~~~~a~eAL~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL 643 (954)
+. .|-|.+ |... -.-..++..+|.+|...|+|++|++.|..++
T Consensus 85 ------------------------~~~~g~y~~-----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~ 129 (282)
T 4f3v_A 85 ------------------------IAIGGLYGD-----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP 129 (282)
T ss_dssp ------------------------EECCTTTCC-----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC
T ss_pred ------------------------hccCCcccc-----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00 010000 0000 0125677888999999999999999999998
Q ss_pred hhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 002199 644 PVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLH 723 (954)
Q Consensus 644 ~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~ 723 (954)
...|... .++.+|.+++..+++++|+.+|+++....+ . .....+
T Consensus 130 ~~~p~~~------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d---~---------------~~~~~a 173 (282)
T 4f3v_A 130 VAGSEHL------------------VAWMKAVVYGAAERWTDVIDQVKSAGKWPD---K---------------FLAGAA 173 (282)
T ss_dssp CTTCHHH------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC---H---------------HHHHHH
T ss_pred hcCCchH------------------HHHHHHHHHHHcCCHHHHHHHHHHhhccCC---c---------------ccHHHH
Confidence 8877552 356677788888888888877775543210 0 011124
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF-AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVS 797 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~-~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~ 797 (954)
++.+|.++...|++++|+.+|++++... ..|. ...+++++|.++..+|+.++|+..|++++..+|+ ..+..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 4556666666666666666666665321 1022 4456666666666666666666666666666665 44443
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.51 E-value=4.5e-13 Score=129.60 Aligned_cols=113 Identities=23% Similarity=0.241 Sum_probs=106.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|.....++.+|..++..|+|++|+.+|++++..+|.+. .+|+.+|.+|..+|++++|+..|++++
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----------RYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455688999999999999999999999999999999999997 899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
.++|+++.+++.+|.+|..+|++++|+..|++++.+.|.+...
T Consensus 80 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 80 LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 9999999999999999999999999999999999999976433
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.50 E-value=7.9e-13 Score=144.12 Aligned_cols=182 Identities=12% Similarity=0.057 Sum_probs=147.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 619 ~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
+...+..++..|+|++|+..+++++...+.... ....+..+..+|.++...+++++|+.+|++++.+.+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~ 146 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-----------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH-----------HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChH-----------HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence 344578889999999999999999986654322 011122344589999999999999999999999766
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---CCchhhHHHHHHHHHHHHHhcCH
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI---ESRPFAAICFCNRAAALQALGQI 775 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~---~~~p~~a~~~~~lA~~y~~lg~~ 775 (954)
...... ..+..+..+|.+|...|+|++|+.+|++++.... ...+..+.+++++|.+|..+|+|
T Consensus 147 ~~~~~~--------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 147 TGIDVY--------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp CCSCTT--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 544411 2344678899999999999999999999996432 34467788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhh
Q 002199 776 ADAIADCSLAMALDENY------TKAVSRRAALHEMIR-DYTQAASDLQRLVSILEN 825 (954)
Q Consensus 776 eeAi~~~ekAL~ldP~~------~~al~~lA~ly~~lg-~~eeAi~~~ekAL~l~p~ 825 (954)
++|+.++++++++.+.. +.+++.+|.+|..+| ++++|+.+|++++.+...
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999886443 889999999999999 579999999999999653
No 120
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.8e-13 Score=126.72 Aligned_cols=121 Identities=26% Similarity=0.351 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+..|+++++++|+++.+++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4567889999999999999999999999999 778899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRH 852 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~ 852 (954)
.++..+|++++|+.+|++++++.|+... .|.+...+..+..+...
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVNN-------GSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHT-------TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccCC-------chhHHHHHHHHHHHHHh
Confidence 9999999999999999999999865432 46666666666666543
No 121
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.50 E-value=1.7e-13 Score=135.33 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS--------VPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~--------~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~ 514 (954)
+....+..+..+|+.++..|+|++|+.+|+++|.+ .|.++.........+.+|+++|.||+.+|+|++|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34567889999999999999999999999999999 2222100000011248999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 515 ~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|+++|+++|+++.+|+++|.+|..+|++++|+..|++++.++|.+.
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999999999999999999999863
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.50 E-value=1e-12 Score=136.62 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=152.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++..... +++.||.+|..
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~-------------------a~~~lg~~y~~ 62 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGD-------------------ALALLAQLKIR 62 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHH-------------------HHHHHHHHTTS
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-------------------HHHHHHHHHHc
Confidence 577888888765 689999999999999999999999999998764321 68899999998
Q ss_pred cC----CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Q 002199 680 IG----KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK----SGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 680 lG----~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~----~g~~eeAi~~y~kAL~l~ 751 (954)
+ ++++|+.+|+++.... + ..++.++|.+|.. .+++++|+.+|++++...
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g--~--------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG--S--------------------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS 119 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT--C--------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred -CCCCCCHHHHHHHHHHHHHCC--C--------------------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence 7 9999999999997642 2 2367779999988 899999999999999887
Q ss_pred cCCch--hhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-c-----CHHHHHHHHHHH
Q 002199 752 IESRP--FAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHEMI-R-----DYTQAASDLQRL 819 (954)
Q Consensus 752 ~~~~p--~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l-g-----~~eeAi~~~ekA 819 (954)
+ ..+.++++||.+|.. .+++++|+.+|++++++ |.++.+++.+|.+|..- | ++++|+.+|+++
T Consensus 120 ----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 120 ----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp ----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred ----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 4 458999999999999 88999999999999998 77888999999999875 3 899999999999
Q ss_pred HHHh
Q 002199 820 VSIL 823 (954)
Q Consensus 820 L~l~ 823 (954)
++.-
T Consensus 195 ~~~g 198 (212)
T 3rjv_A 195 CLEG 198 (212)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9883
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.49 E-value=4.2e-13 Score=131.46 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=103.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|.....++.+|..++..|+|++|+.+|++++.++|.+. .+|+++|.+|..+|++++|+..|++++.++
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----------RFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4588899999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|+++.+++.+|.+|..+|++++|+..|++++++.|+++
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 99999999999999999999999999999999998754
No 124
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=4.8e-13 Score=132.14 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------cCC------chhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN--------IES------RPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~--------~~~------~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
..+..+..+|..++..|+|++|+.+|.+++.+. |.. .|....+|+++|.+|..+|+|++|+.+|++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 445678889999999999999999999999981 111 277889999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhh
Q 002199 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSME 857 (954)
Q Consensus 785 AL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e 857 (954)
+|.++|.++.+|+.+|.+|..+|++++|+.+|++++++.|++.. .+...|..+...+....
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~------------~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS------------VVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH------------HHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999776542 22355666666554443
No 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=6.2e-13 Score=131.60 Aligned_cols=109 Identities=26% Similarity=0.380 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...+..+..|+.+|..++..|+|++|+.+|+++|+++|.+. .+|+++|.+|+.+|++++|+.+|++++++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP----------IYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
+|++..+|+.+|.+|..+|++++|+.+|+++++++|++.
T Consensus 75 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999999999999999999999864
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=6.2e-14 Score=167.74 Aligned_cols=200 Identities=13% Similarity=0.061 Sum_probs=179.8
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHhchhhhhhhhh
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRK----------YEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~----------~eeAi~~~ekaL~l~p~~~~~ 652 (954)
+.........+++.+ +|+..+.+++.++|.+..+|..++.++..+++ +++|+..+++++..+|+++.
T Consensus 32 ~~~~~~~~~~~~~~e--eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~- 108 (567)
T 1dce_A 32 TQAVFQKRQAGELDE--SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG- 108 (567)
T ss_dssp HHHHHHHHHTTCCSH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-
T ss_pred HHHHHHHHHcCCCCH--HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH-
Confidence 344445556677764 88999999999999999999999999999999 99999999999999999976
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIG--KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG--~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
+|+.++.++...+ ++++|++++.++++++|.+.. +|..++.+
T Consensus 109 ----------------aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~--------------------aW~~R~~~ 152 (567)
T 1dce_A 109 ----------------TWHHRCWLLSRLPEPNWARELELCARFLEADERNFH--------------------CWDYRRFV 152 (567)
T ss_dssp ----------------HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcccccHHHHHHHHHHHHhhcccccc--------------------HHHHHHHH
Confidence 8899999999999 779999999999999998865 67778999
Q ss_pred HHHcC-CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHhCCCCHHH
Q 002199 731 AFKSG-RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL--------------GQIADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 731 ~~~~g-~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l--------------g~~eeAi~~~ekAL~ldP~~~~a 795 (954)
+...+ .+++|++++.++|+.+ |.+..+|++++.++..+ +.+++|++++.+||.++|++..+
T Consensus 153 l~~l~~~~~~el~~~~~~I~~~----p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~sa 228 (567)
T 1dce_A 153 AAQAAVAPAEELAFTDSLITRN----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 228 (567)
T ss_dssp HHHTCCCHHHHHHHHHTTTTTT----CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHH
T ss_pred HHHcCCChHHHHHHHHHHHHHC----CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccH
Confidence 99999 9999999999999999 88899999999999986 67899999999999999999999
Q ss_pred HHHHHHHHHHhcCHHH------------HHHHHHHHHHHhhh
Q 002199 796 VSRRAALHEMIRDYTQ------------AASDLQRLVSILEN 825 (954)
Q Consensus 796 l~~lA~ly~~lg~~ee------------Ai~~~ekAL~l~p~ 825 (954)
|+.++.++...+++++ |+.+|.+++.+.|.
T Consensus 229 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 229 WFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp HHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred HHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 9999999999999777 66778888887765
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.48 E-value=1.2e-13 Score=135.38 Aligned_cols=102 Identities=21% Similarity=0.189 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
...+..+|..++..|+|++|+..|++++.++ |.++.+|+++|.+|..+|++++|+..|++++.++|+++.+++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4467789999999999999999999999999 788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..+|++++|+.+|++++++.|++
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999997654
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.47 E-value=2.9e-12 Score=139.61 Aligned_cols=189 Identities=12% Similarity=0.015 Sum_probs=149.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.+.....+..++..++..|+|++|+..|.++++..+.... .......++.+|.++...|++++|+..+++++++.+
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE----FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3566778889999999999999999999999998876431 122345677899999999999999999999998765
Q ss_pred Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHH
Q 002199 524 NF------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEA 597 (954)
Q Consensus 524 ~~------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~ 597 (954)
.. ..++..+|.+|..+|++++|+.+|++++.+..... ....
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--------------------------------~~~~- 193 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--------------------------------DNEE- 193 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--------------------------------CCHH-
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--------------------------------cccc-
Confidence 43 67899999999999999999999999986422100 0000
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
....++.++|.+|..+|+|++|+.++++++.+.+.... ......+++.+|.+|
T Consensus 194 ----------------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-----------~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 194 ----------------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-----------MALIGQLYYQRGECL 246 (293)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-----------CSSHHHHHHHHHHHH
T ss_pred ----------------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-----------HHHHHHHHHHHHHHH
Confidence 01247889999999999999999999999998754211 011123688999999
Q ss_pred HHcCCHHHH-HHHHHHHHhh
Q 002199 678 FCIGKLEVA-LDLLQKLEQV 696 (954)
Q Consensus 678 ~~lG~~eeA-l~~l~kal~l 696 (954)
..+|++++| ..+|++++.+
T Consensus 247 ~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 247 RKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHH
Confidence 999999999 8889999875
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.47 E-value=1.2e-13 Score=141.80 Aligned_cols=151 Identities=13% Similarity=-0.016 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
..+..++.+|..++..|+|++|+.+|++++ .| +. .+|+++|.+|..+|++++|+..|+++++++|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 70 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS----------RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 70 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 355678899999999999999999999996 33 33 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
..+++.+|.+|..+|++++|+..|++++++.|.+.... +.
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------------------------------~~ 110 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID----------------------------------------YK 110 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE----------------------------------------CG
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHH----------------------------------------HH
Confidence 99999999999999999999999999999988652110 01
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
...+...|..+.+++.+|.++..+|++++|+..|++++.+.|..
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 11223456667888999999999999999999999999998865
No 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=1.9e-12 Score=120.72 Aligned_cols=133 Identities=25% Similarity=0.331 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
+|+.+|.++...|++++|+..+++++...|.+.. .+..+|.++...|++++|+.+|++++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE--------------------AWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh--------------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5778999999999999999999999998776532 45668999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
... |....++..+|.++...|++++|+..+++++.+.|.+..+++.+|.++...|++++|+..|++++.+.|+
T Consensus 63 ~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 63 ELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHC----CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 998 6678899999999999999999999999999999999999999999999999999999999999998664
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.46 E-value=9.5e-13 Score=147.12 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=124.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC-----CchHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC-----IKPLVLCYSNRAATRISLGRMREALED 514 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~-----~~~la~~~~~lA~~y~~lg~~eeAl~~ 514 (954)
.....|..+..|..+|..++..|+|++|+.+|+++|.+.|.+...... ....+.+|+++|.||+.+|+|++|+.+
T Consensus 139 a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345578899999999999999999999999999999999997310000 001248999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 515 ~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
|+++|+++|+++.+++++|.+|..+|++++|+.+|+++++++|.
T Consensus 219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------------------------------------ 262 (336)
T 1p5q_A 219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN------------------------------------ 262 (336)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------------------------------------
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------------------------------
Confidence 99999999999999999999999999999999999998886654
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHhchhhh
Q 002199 595 SEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEA-IQLCEHTLPVAE 647 (954)
Q Consensus 595 ~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeA-i~~~ekaL~l~p 647 (954)
+..++..++.++..+|++++| ...|.+++....
T Consensus 263 --------------------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 263 --------------------NKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667777788888888777 456666665433
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.46 E-value=2.1e-13 Score=147.39 Aligned_cols=204 Identities=11% Similarity=-0.031 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH-------HHHHHHcCCHHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR-------AATRISLGRMREALEDCMMA 518 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l-------A~~y~~lg~~eeAl~~~~kA 518 (954)
+....++..|.-+ ..+++..|+.+|.+++.++|... .+|..+ +.++..++++.+++..++++
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~----------Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~ 73 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESAC----------DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS 73 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhh----------HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777776 68999999999999999999997 999999 89999999999999999999
Q ss_pred HhcCCCcH---------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHH
Q 002199 519 ATVDPNFL---------------------KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQ 577 (954)
Q Consensus 519 Lel~P~~~---------------------~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~ 577 (954)
+.+.|... .+++.+|.++...|+|++|.+.|..++...|..
T Consensus 74 l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~------------------ 135 (282)
T 4f3v_A 74 VQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH------------------ 135 (282)
T ss_dssp TTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH------------------
T ss_pred hcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch------------------
Confidence 99887643 344558899999999999999999998888864
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC-C-HHHHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhh
Q 002199 578 KVTEYINCSGKLLEQKTSEAASSALERINEALSISSC-S-EKLLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASV 653 (954)
Q Consensus 578 ~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~-~-~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~ 653 (954)
+ ..+.++..++..++|+ +|+..|..++...+. . ..+++++|.++..+|++++|+..|++++... |...
T Consensus 136 -~-~~~~~a~l~~~~~r~~---dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~--- 207 (282)
T 4f3v_A 136 -L-VAWMKAVVYGAAERWT---DVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA--- 207 (282)
T ss_dssp -H-HHHHHHHHHHHTTCHH---HHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH---
T ss_pred -H-HHHHHHHHHHHcCCHH---HHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc---
Confidence 3 5678888999999999 677777777664322 1 4589999999999999999999999998543 3211
Q ss_pred hhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 654 LADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 654 ~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
..+++.+|.++..+|+.++|...|++++..+|.
T Consensus 208 -------------~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 208 -------------RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 126788999999999999999999999999997
No 133
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.45 E-value=7.8e-14 Score=158.90 Aligned_cols=281 Identities=11% Similarity=0.019 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
.....+...+..+...|+|++|+.+|+.+++..++ + .+...++.+|.++|++.++.+.++. |+.
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~----------~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~ 122 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S----------YVETELIFALAKTNRLAELEEFING-----PNN 122 (449)
T ss_dssp -------------------------------------------------------------CHHHHTTTTTC-----C--
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c----------hhHHHHHHHHHHhCCHHHHHHHHcC-----CcH
Confidence 35568889999999999999999999999986544 3 6788999999999999998877752 543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
.+|..+|..+...|+|++|+.+|.++ ..+..++..+...|+++ +|++.+
T Consensus 123 -~a~~~IGd~~~~~g~yeeA~~~Y~~a---------------------------~n~~~LA~~L~~Lg~yq---~AVea~ 171 (449)
T 1b89_A 123 -AHIQQVGDRCYDEKMYDAAKLLYNNV---------------------------SNFGRLASTLVHLGEYQ---AAVDGA 171 (449)
T ss_dssp ---------------CTTTHHHHHHHT---------------------------TCHHHHHHHHHTTTCHH---HHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHh---------------------------hhHHHHHHHHHHhccHH---HHHHHH
Confidence 59999999999999999999999976 23788899999999999 677878
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEV 685 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ee 685 (954)
.++ .++..|.....++...|+++.|..+... |...|+.. ..+...|...|++++
T Consensus 172 ~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l--------------------~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 172 RKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL--------------------EELINYYQDRGYFEE 225 (449)
T ss_dssp HHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHH--------------------HHHHHHHHHTTCHHH
T ss_pred HHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhH--------------------HHHHHHHHHCCCHHH
Confidence 887 4788999999999999999999877765 44666542 236778999999999
Q ss_pred HHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhccCCch-----hh
Q 002199 686 ALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA--FKSGRYTEAVEHYTVALSTNIESRP-----FA 758 (954)
Q Consensus 686 Al~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~--~~~g~~eeAi~~y~kAL~l~~~~~p-----~~ 758 (954)
|+.++++++.+++.+.. .+..+|.+| ++-++..++++.|...+.+. + ..
T Consensus 226 ai~lLe~aL~le~ah~~--------------------~ftel~il~~ky~p~k~~ehl~~~~~~ini~----k~~~~~~~ 281 (449)
T 1b89_A 226 LITMLEAALGLERAHMG--------------------MFTELAILYSKFKPQKMREHLELFWSRVNIP----KVLRAAEQ 281 (449)
T ss_dssp HHHHHHHHTTSTTCCHH--------------------HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH----HHHHHHHT
T ss_pred HHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc----HHHHHHHH
Confidence 99999999999876633 333344444 45567778888887776665 5 66
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhh
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMAL------------DENYTKAVSRRAALHEMIRDYTQAASDLQRLV--SILE 824 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l------------dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL--~l~p 824 (954)
+.+|..+..+|...++|+.|+...-..... .+.+.+.++.....|. +....++.++..++ .+++
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~ 359 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH 359 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc
Confidence 778999999999999999998866554322 4677888888777776 66677788888888 6655
Q ss_pred h
Q 002199 825 N 825 (954)
Q Consensus 825 ~ 825 (954)
.
T Consensus 360 ~ 360 (449)
T 1b89_A 360 T 360 (449)
T ss_dssp H
T ss_pred H
Confidence 4
No 134
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.44 E-value=8.5e-13 Score=125.63 Aligned_cols=103 Identities=24% Similarity=0.345 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY------ 792 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~------ 792 (954)
..+.++.++|+.++..|+|++|+.+|++||.++ |.++.+|+++|.+|..+|++++|+.+|+++|+++|++
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 446678899999999999999999999999999 7889999999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 793 -TKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 793 -~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
..+++.+|.++..+|++++|+.+|+++|++.|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 468999999999999999999999999998654
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.44 E-value=6.9e-12 Score=130.27 Aligned_cols=175 Identities=16% Similarity=0.027 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----C
Q 002199 466 EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLG----E 541 (954)
Q Consensus 466 eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG----~ 541 (954)
+|+..|+++.+. .++ .+++++|.+|...+++++|+..|+++++. .++.+++.||.+|.. + +
T Consensus 4 eA~~~~~~aa~~--g~~----------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDR----------RAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--TCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--CCH----------HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC
Confidence 567777777765 343 77778888888888888888888887764 467778888887776 5 6
Q ss_pred HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002199 542 IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEM 621 (954)
Q Consensus 542 ~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~ 621 (954)
+++|+.+|+++++ +.++.+++.
T Consensus 69 ~~~A~~~~~~A~~----------------------------------------------------------~g~~~a~~~ 90 (212)
T 3rjv_A 69 YPQARQLAEKAVE----------------------------------------------------------AGSKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHH----------------------------------------------------------TTCHHHHHH
T ss_pred HHHHHHHHHHHHH----------------------------------------------------------CCCHHHHHH
Confidence 7777777766643 235566777
Q ss_pred HHHHHHH----ccCHHHHHHHHHHhchhhhh--hhhhhhhccCcchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 002199 622 KADALYM----LRKYEEAIQLCEHTLPVAEK--NFASVLADNGSVTYSLARLWRWRLISKSYFC----IGKLEVALDLLQ 691 (954)
Q Consensus 622 lA~~~~~----lg~~eeAi~~~ekaL~l~p~--~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~----lG~~eeAl~~l~ 691 (954)
+|.+|.. .+++++|+.+|+++++..+. ... +++.||.+|.. .+++++|+.+|+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~-----------------a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD-----------------AQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH-----------------HHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH-----------------HHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7877776 77888888888888887762 111 56777887777 667777777777
Q ss_pred HHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhc
Q 002199 692 KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-G-----RYTEAVEHYTVALSTN 751 (954)
Q Consensus 692 kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-g-----~~eeAi~~y~kAL~l~ 751 (954)
+++.+ +.+.. ++.++|.+|..- + ++++|+.+|++|+...
T Consensus 154 ~A~~~-~~~~~--------------------a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGY--------------------AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTH--------------------HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHH--------------------HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77665 22211 344566666543 2 6677777777766654
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.44 E-value=4.5e-12 Score=123.89 Aligned_cols=109 Identities=23% Similarity=0.361 Sum_probs=103.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
.......+..|..+|..++..|+|++|+.+|++++...|.+. .++.++|.++..+|++++|+..++++++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 75 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----------IYYGNRSLAYLRTECYGYALGDATRAIE 75 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++|.+..+++.+|.++..+|++++|+.+|++++.+.|.+
T Consensus 76 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999998864
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.43 E-value=6.5e-12 Score=122.77 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 666 RLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYT 745 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~ 745 (954)
....+..+|.+++..|++++|+..|++++.+.|.+.. .+..+|.++...|++++|+.+|+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------------~~~~~a~~~~~~~~~~~A~~~~~ 71 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI--------------------YYGNRSLAYLRTECYGYALGDAT 71 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 3447889999999999999999999999999887633 56678999999999999999999
Q ss_pred HHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 746 VALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR--AALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 746 kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l--A~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
+++.++ |....+++++|.++..+|++++|+.+|++++.++|.+..++..+ +..+...|++++|+..++++..+.
T Consensus 72 ~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 72 RAIELD----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999998 77789999999999999999999999999999999999888554 555889999999999999998886
Q ss_pred hh
Q 002199 824 EN 825 (954)
Q Consensus 824 p~ 825 (954)
+.
T Consensus 148 ~~ 149 (166)
T 1a17_A 148 DS 149 (166)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 138
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=4.2e-12 Score=138.87 Aligned_cols=249 Identities=13% Similarity=0.098 Sum_probs=180.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNF-LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK 578 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~-~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~ 578 (954)
.-++.+|+|..++....+ +.|.. ....+.+.++|+.+|++.... .-.|.
T Consensus 21 kn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~~-------------------- 70 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSKL-------------------- 70 (310)
T ss_dssp HHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSSTT--------------------
T ss_pred HHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC-------CCCHH--------------------
Confidence 345678999999986543 33332 456777889999999987421 11110
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhh--hhhhhhhhc
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAE--KNFASVLAD 656 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p--~~~~~~~~~ 656 (954)
...+.....++. + .|+..+++.+...+.....+..+|.++...|++++|+..+.+.|...| .+.+
T Consensus 71 -~~a~~~la~~~~-~------~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~le----- 137 (310)
T 3mv2_B 71 -GKVLDLYVQFLD-T------KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTE----- 137 (310)
T ss_dssp -HHHHHHHHHHHT-T------TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHH-----
T ss_pred -HHHHHHHHHHhc-c------cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHH-----
Confidence 001111112222 1 267778888777666677778999999999999999999999988876 3433
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Q 002199 657 NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG- 735 (954)
Q Consensus 657 ~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g- 735 (954)
++..++.+|+.+|+++.|.+.++++.+.+|+... ....+......+.+.+..|
T Consensus 138 ------------a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~--------------~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 138 ------------LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS--------------GDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp ------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH--------------HHHHHHHHHHHHHHHHHHTC
T ss_pred ------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc--------------cchHHHHHHHHHHHHHHhCC
Confidence 5678899999999999999999999887762000 0001122223354456556
Q ss_pred -CHHHHHHHHHHHHhhccCCchh--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHH
Q 002199 736 -RYTEAVEHYTVALSTNIESRPF--AAICFCNRAAALQALGQIADAIADCSLAMAL----------DENYTKAVSRRAAL 802 (954)
Q Consensus 736 -~~eeAi~~y~kAL~l~~~~~p~--~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l----------dP~~~~al~~lA~l 802 (954)
++.+|+..|+++.... |. ....+++ +++.+|++++|...++.++++ +|+++.++.+++.+
T Consensus 192 ~~~q~A~~~f~El~~~~----p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTF----PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp STTTHHHHHHHHHHTTS----CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC----CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 9999999999988776 43 3344444 899999999999999988876 58899999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 803 HEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 803 y~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
...+|+ +|.++++++.++.|++
T Consensus 265 ~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 265 ALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHhCh--HHHHHHHHHHHhCCCC
Confidence 999998 8999999999994443
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.42 E-value=3.3e-12 Score=126.31 Aligned_cols=104 Identities=35% Similarity=0.402 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 720 ~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.+..+..+|.+++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|++++.++|+++.+|+.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35577889999999999999999999999999 77899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|.+|..+|++++|+.+|++++++.|++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 9999999999999999999999966543
No 140
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=1.9e-10 Score=139.68 Aligned_cols=343 Identities=6% Similarity=-0.062 Sum_probs=236.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR---MREALEDCMMAA 519 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~---~eeAl~~~~kAL 519 (954)
..|.....|..+.......+.+..|...|++++...|... .+|...+...+..++ ++.+...|+++|
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~----------~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA----------NIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 3456778888888888888999999999999999999987 888888888888888 999999999999
Q ss_pred hcCC--CcHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHhh----chhhhhhHHHHHH-----------------
Q 002199 520 TVDP--NFLKVYMRAAKCHLVLGEI----EN----AQHYYHKLLNS----AAAVCLDRRITIE----------------- 568 (954)
Q Consensus 520 el~P--~~~~a~~~LA~iy~~lG~~----ee----Al~~yekaL~l----~P~~~~~~~~~~e----------------- 568 (954)
...| ..+..|..........++. ++ ....|++|+.. ++..........+
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 8883 4566666655544444433 22 33666666653 2211100000000
Q ss_pred --HHHHHHHHHh-------------------------------HHHHHHHHHHHH-------------------------
Q 002199 569 --AADGLQKAQK-------------------------------VTEYINCSGKLL------------------------- 590 (954)
Q Consensus 569 --a~~~l~~~~~-------------------------------~~~~l~~a~~ll------------------------- 590 (954)
+...+.++.. ....+..+...+
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 0000000000 000000001100
Q ss_pred ---------------------HhcCh---H---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHh
Q 002199 591 ---------------------EQKTS---E---AASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAI-QLCEHT 642 (954)
Q Consensus 591 ---------------------~~g~~---~---~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi-~~~eka 642 (954)
...+. + ........|++++...|..+.+|+..|..+...|+.++|+ .+|+++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 00000 0 0113456799999999999999999999999999999997 999999
Q ss_pred chhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------CCCcchhhHHHHHH
Q 002199 643 LPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG-----------SISDRYGSEILESS 711 (954)
Q Consensus 643 L~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~-----------p~~~~~~~~~l~~~ 711 (954)
+...|.+.. .|+.++.++...|+++.|...|++++... |.... ..
T Consensus 371 i~~~P~s~~-----------------Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~-------~~ 426 (679)
T 4e6h_A 371 QQCIPNSAV-----------------LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES-------AI 426 (679)
T ss_dssp HHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH-------HH
T ss_pred HHhCCCCHH-----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh-------hh
Confidence 999887632 56778889999999999999999998752 21100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 002199 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG-QIADAIADCSLAMALDE 790 (954)
Q Consensus 712 ~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg-~~eeAi~~~ekAL~ldP 790 (954)
..+ .......|...+....+.+..+.|...|.+|+...+ +....+|...|.+....+ +++.|...|+.+|+..|
T Consensus 427 ~~~--~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 427 NQL--KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred hhh--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 000 111233566677777888999999999999998731 334556666677776665 48999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 791 NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 791 ~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+.+..+...+......|+.+.|...|++++...|
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999998999999999999999999999999876
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.41 E-value=2.8e-12 Score=123.99 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
...+..+|..++..|+|++|+.+|++++.++ |.++.+|+.+|.+|..+|++++|+..|++++.++|+++.+++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4467789999999999999999999999999 788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
.+|..+|++++|+.+|++++++.|++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999977543
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.41 E-value=3.5e-12 Score=138.97 Aligned_cols=189 Identities=11% Similarity=-0.003 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
......+...+..++..|+|++|+.+|++++...+..+. .......+..+|.++...+++++|+..|++++.+.+.
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE----FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChH----HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 455667777889999999999999999999998776541 1112345667999999999999999999999997543
Q ss_pred c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHH
Q 002199 525 F------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598 (954)
Q Consensus 525 ~------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a 598 (954)
. ..++..+|.+|..+|++++|+.+|+++++......
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------- 189 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-------------------------------------- 189 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS--------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--------------------------------------
Confidence 2 45799999999999999999999999987422100
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 599 SSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 599 ~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
...+....++.++|.+|..+|+|++|+.++++++++.+.... ......+++.+|.+|.
T Consensus 190 -----------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 190 -----------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-----------MALIGQLYYQRGECLR 247 (293)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-----------CTTHHHHHHHHHHHHH
T ss_pred -----------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHHH
Confidence 001123457889999999999999999999999999875422 1111237889999999
Q ss_pred HcC-CHHHHHHHHHHHHhhC
Q 002199 679 CIG-KLEVALDLLQKLEQVG 697 (954)
Q Consensus 679 ~lG-~~eeAl~~l~kal~l~ 697 (954)
.+| .+++|+.+|++++.+.
T Consensus 248 ~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 248 KLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHH
Confidence 999 5799999999998763
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.41 E-value=8.3e-13 Score=135.00 Aligned_cols=177 Identities=10% Similarity=0.055 Sum_probs=125.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 620 EMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 620 ~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
...+.....+++++.|.+.+.......+.. ...+..+|.+++..|++++|+.+|++++.+.|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 70 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQS-----------------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH 70 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 344556667777887777776555444333 226788999999999999999999999999887
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHH
Q 002199 700 SDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAI 779 (954)
Q Consensus 700 ~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi 779 (954)
++......+.. .........+.++|.+++..|+|++|+.+|++++.++ |....+++++|.+|..+|++++|+
T Consensus 71 ~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 71 TEEWDDQILLD----KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID----KNNVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp CTTCCCHHHHH----HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhHHH----HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcccHHHHH
Confidence 65322110000 0111124677889999999999999999999999998 778899999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHHH
Q 002199 780 ADCSLAMALDENYTKAVSRRAALHEMIRDYTQAA-SDLQRLVS 821 (954)
Q Consensus 780 ~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi-~~~ekAL~ 821 (954)
.+|++++.++|++..++..++.++..++++.++. ..|.+++.
T Consensus 143 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 143 ENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998888 45555544
No 144
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.41 E-value=6.4e-12 Score=117.04 Aligned_cols=134 Identities=25% Similarity=0.376 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a 528 (954)
++|..+|..++..|++++|+.+|++++...|.+. .++..+|.++...|++++|+..+++++.+.|....+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch----------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 4677888888888888888888888888888775 778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEA 608 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ka 608 (954)
++.+|.++...|++++|+..|++++...|
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------------------------- 100 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDP--------------------------------------------------- 100 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT---------------------------------------------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------------------------------------------------
Confidence 88888888888888888888877766544
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 609 L~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
....++..+|.++...|++++|+..+++++...|.
T Consensus 101 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 101 -----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp -----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred -----CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 34445666777777777777777777777777664
No 145
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=2.7e-12 Score=131.69 Aligned_cols=131 Identities=14% Similarity=0.039 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.++.+|.+++..|++++|+..|++++ .| . ...+..+|.++...|++++|+.+|++++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~--------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-H--------------------SRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C--------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57789999999999999999999984 22 1 2367789999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCHHHH
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT----------------KAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~----------------~al~~lA~ly~~lg~~eeA 812 (954)
.++ |....+++++|.+|..+|++++|+..|++++++.|.+. .+++.+|.+|..+|++++|
T Consensus 65 ~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 65 NRD----KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhC----ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 998 77889999999999999999999999999999888766 9999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 002199 813 ASDLQRLVSILENQ 826 (954)
Q Consensus 813 i~~~ekAL~l~p~~ 826 (954)
+.+|++++++.|+.
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 99999999997654
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.39 E-value=9.9e-12 Score=115.53 Aligned_cols=109 Identities=28% Similarity=0.413 Sum_probs=103.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....+..+..+..+|..++..|+|++|+.+|++++...|.+. .++..+|.++..+|++++|+..+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----------VYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++|.+..+++.+|.++..+|++++|+..|++++.+.|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999875
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=6.7e-13 Score=158.80 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=171.5
Q ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCc
Q 002199 457 QAYKNNNL-TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR----------MREALEDCMMAATVDPNF 525 (954)
Q Consensus 457 ~~~~~g~y-~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~----------~eeAl~~~~kALel~P~~ 525 (954)
...+.|+| ++|+..|+++|.++|++. .+|+.++.++..+++ +++|++.++++++.+|++
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~----------taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~ 106 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFA----------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhH----------HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 34456665 577999999999999998 999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-ChHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLG--EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK-TSEAASSAL 602 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG--~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g-~~~~a~eAL 602 (954)
..+|..++.++..++ ++++|++.+.++++++|.+ ...|..++..+...+ .++ +++
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------------------~~aW~~R~~~l~~l~~~~~---~el 164 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------------------FHCWDYRRFVAAQAAVAPA---EEL 164 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTCCCHH---HHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------------------ccHHHHHHHHHHHcCCChH---HHH
Confidence 999999999999999 7799999999999999987 556777777777777 666 899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHH
Q 002199 603 ERINEALSISSCSEKLLEMKADALYML--------------RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLW 668 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~l--------------g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~ 668 (954)
+++.++++.+|.+..+|..++.++..+ +.+++|++++.+++.++|.+..
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s----------------- 227 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS----------------- 227 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH-----------------
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc-----------------
Confidence 999999999999999999999999986 6789999999999999998865
Q ss_pred HHHHHHHHHHHcCCHHH------------HHHHHHHHHhhCCCC
Q 002199 669 RWRLISKSYFCIGKLEV------------ALDLLQKLEQVGSIS 700 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~ee------------Al~~l~kal~l~p~~ 700 (954)
+|+.++.++...+++++ |+.+|.+++.+.|..
T Consensus 228 aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 228 AWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 78888999988888766 566677777776653
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.38 E-value=5.8e-12 Score=119.60 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+..|..+|..++..|+|++|+.+|++++.++|.+. .+|+++|.+++.+|++++|+..|+++++++|+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----------VYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 34578899999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
++.+++.+|.+|..+|++++|+..|++++.+.|+
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999999999999999987
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.38 E-value=5.1e-12 Score=118.43 Aligned_cols=109 Identities=27% Similarity=0.419 Sum_probs=103.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....+....+|+.+|..++..|+|++|+.+|++++...|.+. .++.++|.+|..+|++++|+..|+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA----------KLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH----------HHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----------HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344567788999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++|.+..+++.+|.++..+|++++|+.+|++++.++|.+
T Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999875
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.38 E-value=2e-11 Score=123.71 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=131.0
Q ss_pred HHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhh
Q 002199 626 LYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGS 705 (954)
Q Consensus 626 ~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~ 705 (954)
++..|++++|+..++.+.. +|.. ...++..+|.+|...|++++|+.++++++.+......
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 61 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPAT----------------ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--- 61 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTT----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---
T ss_pred ccccccHHHHHHHHHHhcC-ChHH----------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---
Confidence 4568999999995544422 2211 1236888999999999999999999999886433221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---CCchhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 706 EILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI---ESRPFAAICFCNRAAALQALGQIADAIADC 782 (954)
Q Consensus 706 ~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~---~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ 782 (954)
....+..+..+|.++...|++++|+.+|++++.+.. +.......++.++|.++..+|++++|+.++
T Consensus 62 -----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 62 -----------HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 223456788899999999999999999999999832 222367889999999999999999999999
Q ss_pred HHHHHhCC--CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 783 SLAMALDE--NY----TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 783 ekAL~ldP--~~----~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
++++.+.+ .+ ..++..+|.++..+|++++|+.+|++++++....
T Consensus 131 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 131 EKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 99997632 12 3457899999999999999999999999996543
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.37 E-value=2.6e-12 Score=121.19 Aligned_cols=100 Identities=19% Similarity=0.041 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.++.+|..++..|++++|+..|+++++.+|.+. .+|+.+|.++..+|++++|+..|+++++++|++..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 88 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE----------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 468899999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+.+|.+|..+|++++|+..|+++++++|.+
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999864
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.37 E-value=2.2e-12 Score=140.25 Aligned_cols=195 Identities=9% Similarity=0.079 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
...+..+|..++..|+++ +|+..|.+++..+|.++.++..+|.+|..+|++++|+..|++++++.|.+..
T Consensus 4 a~~~~~~g~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 73 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYP---EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK------- 73 (281)
T ss_dssp HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH-------
T ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-------
Confidence 345778899999999999 8999999999999999999999999999999999999999999999998754
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
+++.+|.+|..+|++++|+..|++++.++|.+.......+.... ...
T Consensus 74 ----------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-----------------------~~~ 120 (281)
T 2c2l_A 74 ----------AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-----------------------RIA 120 (281)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-----------------------HHH
T ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-----------------------HHH
Confidence 78899999999999999999999999998866432211111110 011
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMI-RDYTQAASDLQ 817 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l-g~~eeAi~~~e 817 (954)
++..+........ +....+...++.++ .|++++|+..++++++++|.+......++.++... +.+++|...|.
T Consensus 121 ~~~~~~~~~~~~~----~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 121 KKKRWNSIEERRI----HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp HHHHHHHHHHTCC----CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222233 33444455555544 79999999999999999999998888888887776 77889999998
Q ss_pred HHHHH
Q 002199 818 RLVSI 822 (954)
Q Consensus 818 kAL~l 822 (954)
++.+.
T Consensus 195 ~a~~~ 199 (281)
T 2c2l_A 195 QVDEK 199 (281)
T ss_dssp HSSCT
T ss_pred hhhcc
Confidence 88664
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.37 E-value=1.1e-12 Score=152.87 Aligned_cols=162 Identities=17% Similarity=0.091 Sum_probs=132.8
Q ss_pred HccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHH
Q 002199 628 MLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEI 707 (954)
Q Consensus 628 ~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~ 707 (954)
.++++++|+..|+.++...|.... .|..+|.+|+..|+|++|+..|++++.+.|.+.......
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~-----------------~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~ 308 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAA-----------------IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKE 308 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHH-----------------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHH
Confidence 455667777777777777766533 788999999999999999999999999998875321110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 708 LESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 708 l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
........+..+.++|.+|+.+++|++|+.+|+++|.++ |.+..+|+++|.+|..+|++++|+.+|+++++
T Consensus 309 -----~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 309 -----SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD----SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111223345678899999999999999999999999999 77899999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 788 LDENYTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 788 ldP~~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
++|++..++..++.++..++++++|...
T Consensus 380 l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 380 VNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.36 E-value=5e-12 Score=147.40 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=104.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccccc-----CCchHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 439 SPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGC-----CIKPLVLCYSNRAATRISLGRMREALE 513 (954)
Q Consensus 439 ~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~-----~~~~la~~~~~lA~~y~~lg~~eeAl~ 513 (954)
......|..+..|+.+|+.+++.|+|.+|+.+|++||+++|.+..... .....+.+|+++|.||+.+|+|++|+.
T Consensus 259 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344567889999999999999999999999999999999998731000 000124899999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 514 ~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+|+++|+++|++..+|+++|.+|..+|++++|+.+|+++++++|.+
T Consensus 339 ~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999976
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.36 E-value=1.2e-11 Score=126.19 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=109.2
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC------CchHHHHHHHHHHHHHHcCCH
Q 002199 435 QRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC------IKPLVLCYSNRAATRISLGRM 508 (954)
Q Consensus 435 ~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~------~~~la~~~~~lA~~y~~lg~~ 508 (954)
+.+.+.....+..+..+..+|..++..|+|++|+.+|.+++.+.|.++..... ......+|.++|.+|+.+|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 104 (198)
T 2fbn_A 25 SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 104 (198)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34555666778889999999999999999999999999999999887511000 000137999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 509 eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
++|+.+|+++++++|.+..+++.+|.+|..+|++++|+..|++++.++|.+.
T Consensus 105 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 105 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 9999999999999999999999999999999999999999999999999763
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.35 E-value=3.9e-12 Score=127.06 Aligned_cols=126 Identities=21% Similarity=0.152 Sum_probs=111.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
+...|++++|+..|++++...|.+.. .+..+|.+++..|++++|+.+|++++.++ |
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~--------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p 75 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSE--------------------QWALLGEYYLWQNDYSNSLLAYRQALQLR----G 75 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----C
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C
Confidence 45688999999999999999987643 56779999999999999999999999999 6
Q ss_pred hhHHHHHHHHHH-HHHhcCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 757 FAAICFCNRAAA-LQALGQI--ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 757 ~~a~~~~~lA~~-y~~lg~~--eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+..++..+|.+ +...|++ ++|+..|++++.++|.+..+++.+|.+|..+|++++|+..|++++++.|.+
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 678899999999 8899999 999999999999999999999999999999999999999999999996653
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=8.8e-11 Score=134.09 Aligned_cols=221 Identities=10% Similarity=-0.019 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCC-------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI-------KPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~-------~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
.....|..+...|+|++|++.|.++++..|......... .....++.++|.+|..+|++++|++.+.+++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999998865321111 1134678999999999999999999999999876
Q ss_pred CCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH
Q 002199 523 PNFL------KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596 (954)
Q Consensus 523 P~~~------~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~ 596 (954)
+... .++..++.++...|++++|+.++++++...+...... .....+..++..+...|+|.
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF-------------LKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS-------------SHHHHHHHHHHHHHHHTCHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH-------------HHHHHHHHHHHHHHHccChH
Confidence 6542 3455678888899999999999999998765431111 12445678899999999999
Q ss_pred HHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 597 AASSALERINEALSI------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
+|+..+.+++.. .+....++..++.+|..+|+|++|..+|++++.+.+.... ........+
T Consensus 153 ---~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~ 219 (434)
T 4b4t_Q 153 ---DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC----------PTQTVAELD 219 (434)
T ss_dssp ---HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----------CHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC----------chHHHHHHH
Confidence 566666666553 2344778999999999999999999999999988765421 111122356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l 696 (954)
..+|.++...+++.+|..+|.+++..
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 77899999999999999999999875
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.35 E-value=2.5e-11 Score=115.16 Aligned_cols=102 Identities=31% Similarity=0.437 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..+..+|..++..|+|++|+.+|++++.++ |..+.+++++|.++..+|++++|+..|++++.++|+++.+++.+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3467789999999999999999999999999 778899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..+|++++|+.+|++++++.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 99999999999999999999998873
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.33 E-value=7.7e-12 Score=117.99 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+..+|..++..|++++|+..|++++.++ |.++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhh
Q 002199 804 EMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
..+|++++|+..|++++++.|+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999997764
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.32 E-value=3.2e-11 Score=122.17 Aligned_cols=169 Identities=12% Similarity=-0.000 Sum_probs=129.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCcHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT------VDPNFLKVYMR 531 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe------l~P~~~~a~~~ 531 (954)
++..|+|++|+..++.... +|.. .+.++..+|.++..+|++++|+..+++++. ..|....++..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 71 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPAT---------ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQ 71 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTT---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC-ChHH---------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4678999999996655433 4432 258999999999999999999999999999 44556789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI 611 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~ 611 (954)
+|.+|..+|++++|+.+|++++.+.... ++
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------~~----------------- 101 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASL---------------------------------PE----------------- 101 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHS---------------------------------CC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc---------------------------------Cc-----------------
Confidence 9999999999999999999988852210 00
Q ss_pred CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 612 SS-CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 612 ~P-~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
.| ....++..+|.++..+|++++|+..+++++.+.+.... .......+..+|.++...|++++|+.++
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-----------QVAIACAFRGLGDLAQQEKNLLEAQQHW 170 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 00 12346788999999999999999999999988654321 1223346788999999999999999999
Q ss_pred HHHHhhC
Q 002199 691 QKLEQVG 697 (954)
Q Consensus 691 ~kal~l~ 697 (954)
++++.+.
T Consensus 171 ~~al~~~ 177 (203)
T 3gw4_A 171 LRARDIF 177 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=4.1e-11 Score=109.33 Aligned_cols=103 Identities=27% Similarity=0.380 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..+..+|..++..|+|++|+.+|++++...|.+. .++..+|.++..+|++++|+..++++++++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 567899999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.+++.+|.++..+|++++|+..|+++++++|.+
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999976
No 162
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.31 E-value=3e-11 Score=116.28 Aligned_cols=145 Identities=13% Similarity=0.088 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 666 RLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYT 745 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~ 745 (954)
..+++..+|.+|...|++++|+.++++++.+.+.... ....+..+..+|.++...|++++|+.+|+
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------------KAAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--------------chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3457889999999999999999999999886442211 22234567889999999999999999999
Q ss_pred HHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002199 746 VALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE------NYTKAVSRRAALHEMIRDYTQAASDLQ 817 (954)
Q Consensus 746 kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP------~~~~al~~lA~ly~~lg~~eeAi~~~e 817 (954)
+++.+.+. ..+....++.++|.++..+|++++|+.++++++.+.+ ....++..+|.++..+|++++|+.+++
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99988532 2344578899999999999999999999999998742 236788999999999999999999999
Q ss_pred HHHHHhh
Q 002199 818 RLVSILE 824 (954)
Q Consensus 818 kAL~l~p 824 (954)
+++++..
T Consensus 154 ~a~~~~~ 160 (164)
T 3ro3_A 154 KHLEISR 160 (164)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999854
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.31 E-value=7.3e-12 Score=125.12 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=104.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
..++..|+|++|+..|++++..+|.+. .+|+.+|.+|+..|++++|+..|+++++++|.++.+++.+|.+
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNS----------EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 335678899999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred -HHHcCCH--HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC
Q 002199 536 -HLVLGEI--ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612 (954)
Q Consensus 536 -y~~lG~~--eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~ 612 (954)
+...|++ ++|+..|++++.++|.+ ...++.++..++..|+++ +|+..|.+++.+.
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~ 145 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDSNE-------------------ITALMLLASDAFMQANYA---QAIELWQKVMDLN 145 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHTC
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHcccHH---HHHHHHHHHHhhC
Confidence 8899998 99999999998887764 334556666666677766 6666667777777
Q ss_pred CCCHH
Q 002199 613 SCSEK 617 (954)
Q Consensus 613 P~~~~ 617 (954)
|.+..
T Consensus 146 p~~~~ 150 (177)
T 2e2e_A 146 SPRIN 150 (177)
T ss_dssp CTTSC
T ss_pred CCCcc
Confidence 66543
No 164
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.29 E-value=2.8e-11 Score=113.33 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 668 WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 668 ~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
.+|+.+|.+++..|++++|+.+|++++...|.+. ..+..+|.++...|++++|+.+|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--------------------KLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH--------------------HHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--------------------HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3678889999999999999999999998877653 25667888999999999999999999
Q ss_pred HhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 748 L~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
+.+. |....+++++|.++..+|++++|+.+|++++.++|.+..++..++.++..+|+
T Consensus 77 ~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 77 IQLE----PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhC----CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9988 66788899999999999999999999999999999999999999999888764
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.29 E-value=2.7e-12 Score=143.61 Aligned_cols=123 Identities=22% Similarity=0.219 Sum_probs=100.0
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCC-------chHHHHHHHHHHHHHHcCCHH
Q 002199 437 TVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI-------KPLVLCYSNRAATRISLGRMR 509 (954)
Q Consensus 437 ~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~-------~~la~~~~~lA~~y~~lg~~e 509 (954)
+.......+..+..++.+|+.++..|+|++|+.+|+++|.+.|.+....... .....+|+++|.||+.+|+|+
T Consensus 168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 4445566788899999999999999999999999999999999753000000 000138999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 510 eAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+|+.+|+++|+++|++..+|+++|.+|..+|++++|+.+|+++++++|.+
T Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 248 EAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999988864
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=6.3e-11 Score=135.31 Aligned_cols=217 Identities=12% Similarity=0.029 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHhc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSE-----------------KLLEMKADALYMLRKYEEAIQLCEHTL 643 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~-----------------~~~~~lA~~~~~lg~~eeAi~~~ekaL 643 (954)
..+..+..+...|+|. +|++.|.+++...|... .++..+|.+|...|++++|++++.+++
T Consensus 6 ~~l~~a~~l~~~~~y~---eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYN---EAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHHHHHTCHH---HHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3567788889999999 89999999999877542 368899999999999999999999999
Q ss_pred hhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 002199 644 PVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLH 723 (954)
Q Consensus 644 ~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~ 723 (954)
...+.... ..........++.++...|++++|+.++++++...+..... ...+..
T Consensus 83 ~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~~~ 137 (434)
T 4b4t_Q 83 EYMMQFAK-----------SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--------------FLKHSL 137 (434)
T ss_dssp HHHHTSCH-----------HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--------------SSHHHH
T ss_pred HHHHHccc-----------hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--------------HHHHHH
Confidence 88764321 11111245678889999999999999999998764322221 112345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CC----HH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE---NY----TK 794 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP---~~----~~ 794 (954)
+..+|.++...|+|.+|+.++++++.... .+.+....++..++.+|..+|++++|...+++++.+.+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 67799999999999999999999987632 34577889999999999999999999999999987742 22 35
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.+..+|.++...++|++|..+|.++++..+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 6777899999999999999999999988654
No 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.28 E-value=1e-10 Score=108.56 Aligned_cols=118 Identities=30% Similarity=0.443 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
.....+..+|..++..|++++|+.+|++++... |....++..+|.++..+|++++|+..+++++.++|.++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 445677889999999999999999999999998 6778899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhh
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHL 853 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L 853 (954)
+|.++..+|++++|+.+|++++++.|+ +...+..+..++..+
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~-------------~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD-------------NETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc-------------chHHHHHHHHHHHHH
Confidence 999999999999999999999999554 444455666665544
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.28 E-value=3.9e-12 Score=149.16 Aligned_cols=105 Identities=24% Similarity=0.379 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
++.+..+..+|..++..|+|++|+.+|++||+++|.+. .+|.++|.+|..+|++++|+..|+++++++|+
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 72 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----------IYYGNRSLAYLRTECYGYALGDATRAIELDKK 72 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 56677888999999999999999999999999999986 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++.+++.+|.+|..+|++++|+..|+++++++|.+
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999887753
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.27 E-value=1.4e-10 Score=111.48 Aligned_cols=151 Identities=16% Similarity=0.164 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
..++..+|.++...|++++|+..+++++.+.+.... ......++..+|.+|...|++++|+.++++++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------KAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999875422 222334788899999999999999999999988
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhc
Q 002199 696 VGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALG 773 (954)
Q Consensus 696 l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg 773 (954)
+.+.... .......+..+|.++...|++++|+.+|++++.+.+ ...+....++..+|.++..+|
T Consensus 78 ~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 78 LARQLKD--------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp HHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCC--------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 6543322 122345677899999999999999999999998743 233566889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 002199 774 QIADAIADCSLAMALDEN 791 (954)
Q Consensus 774 ~~eeAi~~~ekAL~ldP~ 791 (954)
++++|+.++++++++...
T Consensus 144 ~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 144 NHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987543
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.27 E-value=9.3e-11 Score=106.89 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..+..+|..++..|++++|+.+|++++... |....++..+|.++..+|++++|+..+++++.++|.++.+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4567789999999999999999999999998 677889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.++..+|++++|+..|++++++.|.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999995544
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.4e-11 Score=115.20 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+..++.+|..++..|+|++|+.+|+++++..|.+. ....+|.++|.+|+.+|++++|+..|+++++++|+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-------DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 44578899999999999999999999999999999861 12389999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+..+++.+|.+|..+|++++|+.+|++++.++|.+
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999975
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.26 E-value=5e-11 Score=110.88 Aligned_cols=103 Identities=23% Similarity=0.292 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
+.+..+..+|..++..|+|++|+.+|++++...|.+. .++.++|.+|..+|++++|+..|++++.+.|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----------TYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----------HHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 4678899999999999999999999999999999986 899999999999999999999999999998877
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 526 -------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 526 -------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
..+++.+|.+|..+|++++|+.+|++++.+.|+
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999874
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.26 E-value=7.2e-11 Score=133.75 Aligned_cols=126 Identities=25% Similarity=0.344 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC------------CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE------------SRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~------------~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
+..+..+|..++..|+|++|+..|++|+.+.+. ..|....+|+++|.+|..+|++++|+.+|+++|++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 456778999999999999999999999983221 22788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 789 DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 789 dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
+|+++.+++.+|.+|..+|++++|+.+|++++++.| ++..++..+..++..++..+++
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-------------~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-------------EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999954 4445556777777766655544
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.25 E-value=8.8e-11 Score=110.09 Aligned_cols=104 Identities=10% Similarity=-0.016 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF--- 525 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~--- 525 (954)
+.++.+|..++..|+|++|+..|++++...|.+. ....+++.+|.+++.+|++++|+..|++++.++|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGV-------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 4578899999999999999999999999999875 123689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+.+++.+|.+|..+|++++|+..|++++...|+.
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999999999999999999976
No 175
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.24 E-value=2.5e-10 Score=104.96 Aligned_cols=103 Identities=24% Similarity=0.382 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..|..+|..++..|++++|+.+|++++...|.+. .++..+|.++...|++++|+..+++++.+.|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 367899999999999999999999999999999886 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.+++.+|.++..+|++++|+..|++++.+.|.+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999875
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.24 E-value=6.9e-11 Score=133.94 Aligned_cols=119 Identities=22% Similarity=0.200 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc------cccCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSET------AGCCIKPLVLCYSNRAATRISLGRMREALEDC 515 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~------~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~ 515 (954)
......+..|..+|..++..|+|++|+.+|++||++.+.... ........+.+|.++|.+|+.+|+|++|+.+|
T Consensus 217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 344567788999999999999999999999999994322100 00000112489999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 516 MMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 516 ~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
+++|+++|++..+++.+|.+|..+|++++|+.+|+++++++|.+.
T Consensus 297 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 297 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999999763
No 177
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=2.8e-10 Score=124.52 Aligned_cols=188 Identities=14% Similarity=0.037 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHH
Q 002199 467 AEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP--NFLKVYMRAAKCHLVLGEIEN 544 (954)
Q Consensus 467 Ai~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P--~~~~a~~~LA~iy~~lG~~ee 544 (954)
|+..|++.+...+... ..+..+|.++...|++++|+..+.+.|..+| ....++..++.+++.+|+.+.
T Consensus 85 a~~~l~~l~~~~~~~~----------~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP----------YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTSCCCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCCCc----------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 8888888887754444 5678999999999999999999999999997 899999999999999999999
Q ss_pred HHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHhcCCC--CHHHHH
Q 002199 545 AQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK--TSEAASSALERINEALSISSC--SEKLLE 620 (954)
Q Consensus 545 Al~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g--~~~~a~eAL~~l~kaL~~~P~--~~~~~~ 620 (954)
|.+.++++.+.+|+.... -..+...+..++..+..| ++. +|+..|+++....|. ...+++
T Consensus 155 A~k~l~~~~~~~~d~~~~-------------~d~~l~~Laea~v~l~~g~~~~q---~A~~~f~El~~~~p~~~~~~lLl 218 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSG-------------DNEMILNLAESYIKFATNKETAT---SNFYYYEELSQTFPTWKTQLGLL 218 (310)
T ss_dssp HHHHHHHHHHHSCHHHHH-------------HHHHHHHHHHHHHHHHHTCSTTT---HHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccc-------------chHHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhCCCcccHHHHH
Confidence 999999999988830000 001223444454455555 777 789999999888886 333444
Q ss_pred HHHHHHHHccCHHHHHHHHHHhchhhh----------hhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 621 MKADALYMLRKYEEAIQLCEHTLPVAE----------KNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 621 ~lA~~~~~lg~~eeAi~~~ekaL~l~p----------~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
. +++.+|++++|...++.+++..| ++.. ++.++..+...+|+ +|.+++
T Consensus 219 n---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~-----------------~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 219 N---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT-----------------FLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp H---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH-----------------HHHHHHHHHHHTTC--TTHHHH
T ss_pred H---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH-----------------HHHHHHHHHHHhCh--HHHHHH
Confidence 3 89999999999999998888754 3433 45567777778887 899999
Q ss_pred HHHHhhCCCCcc
Q 002199 691 QKLEQVGSISDR 702 (954)
Q Consensus 691 ~kal~l~p~~~~ 702 (954)
+++.+..|.++-
T Consensus 277 ~qL~~~~P~hp~ 288 (310)
T 3mv2_B 277 NQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHTTCCCHH
T ss_pred HHHHHhCCCChH
Confidence 999999998865
No 178
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.22 E-value=7.6e-09 Score=125.71 Aligned_cols=352 Identities=9% Similarity=0.067 Sum_probs=233.5
Q ss_pred hhhHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH----HHH---
Q 002199 442 AAFQETCEMWRLRGNQAYKNNN---LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM----REA--- 511 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~---y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~----eeA--- 511 (954)
...|.....|.......++.++ ++.+..+|++||...|..+. +.+|..........++. +++
T Consensus 94 ~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s--------v~LW~~Yl~f~~~~~~~~~~~~~~r~~ 165 (679)
T 4e6h_A 94 DRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND--------LSLWLSYITYVRKKNDIITGGEEARNI 165 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC--------HHHHHHHHHHHHHHSCSTTTHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHHHHhcccccccchhHHH
Confidence 3445556778888888888888 99999999999999942111 25666666555555543 333
Q ss_pred -HHHHHHHHh---c-CCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhchhhhhh---------------
Q 002199 512 -LEDCMMAAT---V-DPNFLKVYMRAAKCHL---------VLGEIENAQHYYHKLLNSAAAVCLD--------------- 562 (954)
Q Consensus 512 -l~~~~kALe---l-~P~~~~a~~~LA~iy~---------~lG~~eeAl~~yekaL~l~P~~~~~--------------- 562 (954)
.+.|++||. . ++....+|........ ..++++.+...|+++|.+ |.....
T Consensus 166 vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~ 244 (679)
T 4e6h_A 166 VIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQ 244 (679)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCc
Confidence 467777776 3 6666666655554432 234567788888888763 311000
Q ss_pred ---HHHHHHHHH-------H------------------------------------------------------------
Q 002199 563 ---RRITIEAAD-------G------------------------------------------------------------ 572 (954)
Q Consensus 563 ---~~~~~ea~~-------~------------------------------------------------------------ 572 (954)
...+.+... .
T Consensus 245 ~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~ 324 (679)
T 4e6h_A 245 LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLH 324 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 000000000 0
Q ss_pred -------HHHHHh-----HHHHHHHHHHHHHhcChHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 002199 573 -------LQKAQK-----VTEYINCSGKLLEQKTSEAASSAL-ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLC 639 (954)
Q Consensus 573 -------l~~~~~-----~~~~l~~a~~ll~~g~~~~a~eAL-~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ 639 (954)
+.++.. ...|+..+..+...++.+ +|+ ..|.+++...|.+..+++.++.+....|++++|..+|
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~---~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS---TVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCT---THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 000000 122333334444455555 676 8899999999999999999999999999999999999
Q ss_pred HHhchhhhhhhhhhhhccC-----cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 002199 640 EHTLPVAEKNFASVLADNG-----SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSL 714 (954)
Q Consensus 640 ekaL~l~p~~~~~~~~~~~-----~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l 714 (954)
++++...+........... ...........|...+.+..+.|..+.|...|.+|++..|....
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~------------ 469 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP------------ 469 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT------------
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh------------
Confidence 9999875422210000000 00000111125667778888899999999999999886221111
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--
Q 002199 715 AGTVRALLHHKSAGNEAFKSG-RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN-- 791 (954)
Q Consensus 715 ~~~~~~~~~~~~lG~~~~~~g-~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~-- 791 (954)
..+...+.+.+..+ +++.|...|+.+++.. |..+.++...+......|+.+.|...|++|+...|+
T Consensus 470 -------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~----p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 470 -------DIYLENAYIEYHISKDTKTACKVLELGLKYF----ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp -------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred -------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 12223444555554 5999999999999998 667778888888888999999999999999999883
Q ss_pred -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 792 -YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 792 -~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
....|......-...|+.+.+...++++++..|++..
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 5677777788888999999999999999999887543
No 179
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.22 E-value=3.5e-10 Score=103.99 Aligned_cols=115 Identities=25% Similarity=0.363 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.|+.+|.++...|++++|+..|++++...|.+.. .+..+|.++...|++++|+.+|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------------AWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH--------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6778899999999999999999999988775532 45668899999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg 807 (954)
.+. |....++..+|.++..+|++++|+..|++++.++|.+..++..++.++..+|
T Consensus 71 ~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 71 ELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 988 6677889999999999999999999999999999999999999999887764
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.21 E-value=1.7e-11 Score=110.87 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN-- 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~-- 524 (954)
.+..+..+|..++..|++++|+.+|+++++..|.+. .++.++|.++..+|++++|+..|+++++++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES----------KYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence 456688899999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhchhh
Q 002199 525 FLKVYMRAAKCHLVL-GEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 ~~~a~~~LA~iy~~l-G~~eeAl~~yekaL~l~P~~ 559 (954)
+..+++.+|.++..+ |++++|++++++++...|..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 99999999999999988854
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.6e-10 Score=110.40 Aligned_cols=105 Identities=33% Similarity=0.365 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..+..+|..++..|+|++|+.+|++++.+.|.. +....++.++|.+|..+|++++|+.+|++++.++|.++.+++.+|
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3467778999999999999999999999998421 223899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..+|++++|+.+|++++++.|++
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999995544
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.21 E-value=3.1e-10 Score=106.25 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY---TKAVSRRA 800 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~---~~al~~lA 800 (954)
++.+|..++..|+|++|+..|++++...|.+ +....+++.+|.++..+|++++|+..|++++.++|++ +.+++.+|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 5568999999999999999999999998643 4445899999999999999999999999999999999 89999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
.+|..+|++++|+..|++++++.|+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 999999999999999999999976554
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.20 E-value=2.2e-10 Score=106.51 Aligned_cols=100 Identities=22% Similarity=0.275 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------H
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-------T 793 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-------~ 793 (954)
...+..+|..++..|++++|+.+|++++... |..+.+++++|.++..+|++++|+.+|++++.+.|.+ .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 4567789999999999999999999999998 6778999999999999999999999999999998877 9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
.+++.+|.+|..+|++++|+.+|++++++.|
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999854
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.20 E-value=2.6e-11 Score=119.32 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=84.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCcHHH
Q 002199 459 YKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM----------REALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 459 ~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~----------eeAl~~~~kALel~P~~~~a 528 (954)
-+.+.|++|+..|+++++++|.+. .+|.++|.++..++++ ++|+..|++||+++|++..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~a----------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A 82 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDA----------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence 355679999999999999999997 9999999999999875 59999999999999999999
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhhchhh
Q 002199 529 YMRAAKCHLVLG-----------EIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 529 ~~~LA~iy~~lG-----------~~eeAl~~yekaL~l~P~~ 559 (954)
|+.+|.+|..+| ++++|+.+|++|++++|++
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 999999999885 8999999999999999975
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.16 E-value=5.3e-11 Score=133.05 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH-----------------HHHHHHHHHHHHhcCHHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA-----------------ICFCNRAAALQALGQIADAIAD 781 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a-----------------~~~~~lA~~y~~lg~~eeAi~~ 781 (954)
..+..+..+|..++..|+|++|+.+|++|+.+. |... .+|+++|.+|..+|+|++|+.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345567789999999999999999999999998 4444 4899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 782 CSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 782 ~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
|+++|+++|+++.+|+++|.+|..+|++++|+.+|++++++.|++
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999996654
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.14 E-value=5.5e-11 Score=116.98 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=85.6
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQI----------ADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~----------eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
+.+.|++|+..|+++++++ |.++.+|+++|.++..++++ ++|+..|++||+++|++..+|+++|.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 4577999999999999999 88999999999999999875 599999999999999999999999999
Q ss_pred HHHhc-----------CHHHHHHHHHHHHHHhhhhHHH
Q 002199 803 HEMIR-----------DYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 803 y~~lg-----------~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
|..+| ++++|+.+|++|+++.|++..+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 99885 8999999999999997766544
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.13 E-value=1.5e-10 Score=107.71 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=83.3
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
..|++++|+.+|++++.+.+. .|....+++++|.+|..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 368999999999999998311 1889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHH
Q 002199 813 ASDLQRLVSILENQSA 828 (954)
Q Consensus 813 i~~~ekAL~l~p~~~~ 828 (954)
+..|++++++.|++..
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 9999999999766543
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.13 E-value=1.6e-11 Score=144.02 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.+..+|.+++..|++++|+.+|+++++++|.+. ..+.++|.+|..+|+|++|+.+|++|+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~--------------------~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--------------------IYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH--------------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--------------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455678899999999999999999999988763 367789999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCHHHHHHHHH---------
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL--HEMIRDYTQAASDLQ--------- 817 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l--y~~lg~~eeAi~~~e--------- 817 (954)
+++ |..+.+++++|.+|..+|++++|+..|+++++++|++..++..++.+ +..+|++++|+..++
T Consensus 68 ~l~----p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 143 (477)
T 1wao_1 68 ELD----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 143 (477)
T ss_dssp HSC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCC
T ss_pred HhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhh
Confidence 998 77899999999999999999999999999999999999999999988 899999999999999
Q ss_pred --HHHHHhhh
Q 002199 818 --RLVSILEN 825 (954)
Q Consensus 818 --kAL~l~p~ 825 (954)
+++.+.|.
T Consensus 144 ~~~al~~~~~ 153 (477)
T 1wao_1 144 DIESMTIEDE 153 (477)
T ss_dssp TTSSCCCCTT
T ss_pred hhhhcccccc
Confidence 66666554
No 189
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.09 E-value=2.1e-10 Score=103.62 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN--YTKAVSRRA 800 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~--~~~al~~lA 800 (954)
.+..+|.+++..|++++|+.+|++++.+. |....+++++|.++..+|++++|+..|+++++++|. +..+++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34568999999999999999999999998 667889999999999999999999999999999999 999999999
Q ss_pred HHHHHh-cCHHHHHHHHHHHHHHhhh
Q 002199 801 ALHEMI-RDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 801 ~ly~~l-g~~eeAi~~~ekAL~l~p~ 825 (954)
.++..+ |++++|+++|++++...|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 999999 9999999999999998553
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.09 E-value=1e-10 Score=108.89 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=81.2
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002199 460 KNNNLTEAEDFYTQGINS---VPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCH 536 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~---~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy 536 (954)
..|++++|+.+|+++|++ +|.+. .+++++|.+|+.+|++++|+..|+++++++|+++.+++.+|.+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~----------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLA----------ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 468999999999999999 46654 89999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhchhh
Q 002199 537 LVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 537 ~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
..+|++++|+..|++++...|.+
T Consensus 72 ~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999998875
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.09 E-value=7.5e-11 Score=107.27 Aligned_cols=95 Identities=23% Similarity=0.296 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF- 525 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~- 525 (954)
.++.|..+|..++..|+|++|+..|++++.++|.+. .+|+++|.+|+.+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP----------VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc
Confidence 467899999999999999999999999999999987 899999999999999999999999999999998
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 526 -----LKVYMRAAKCHLVLGEIENAQHYYHK 551 (954)
Q Consensus 526 -----~~a~~~LA~iy~~lG~~eeAl~~yek 551 (954)
..+++.+|.++..+|++++|+..|++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 99999999999999999888877654
No 192
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.9e-11 Score=113.80 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=70.1
Q ss_pred CCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCCCCCCCCCC
Q 002199 863 GEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGYACRSSRRQ 938 (954)
Q Consensus 863 ~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~~~~~~~~ 938 (954)
....+||++|||.++++..+|+++||+++++||||++.. ...+..|.++|++|++ +..|+.||.+|........+
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d-~~~R~~YD~~~~~~~~~~~~ 95 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTN-EESRARYDHWRRSQMSMPFQ 95 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHTCSSCHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhhhhccCCCHH
Confidence 346899999999999999999999999999999999874 3456778899999986 88999999998655555555
Q ss_pred cccccccccCC
Q 002199 939 SRQDNWKTYGN 949 (954)
Q Consensus 939 ~~~~~~~~~~~ 949 (954)
.|......+..
T Consensus 96 ~w~~~~~~~~~ 106 (112)
T 2ctq_A 96 QWEALNDSVKT 106 (112)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHHHhhccC
Confidence 67665555444
No 193
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.08 E-value=6.3e-11 Score=101.54 Aligned_cols=66 Identities=35% Similarity=0.508 Sum_probs=59.2
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-hhHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-YDQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+..+.+++++|++ |..|+.||.+|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSD-EKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTS-HHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCC-HHHHHHHHhcCC
Confidence 35789999999999999999999999999999999875 3667889999999986 889999999883
No 194
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=101.83 Aligned_cols=66 Identities=32% Similarity=0.472 Sum_probs=58.7
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+..|.+++++|++ +..|+.||.+|.
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~YD~~g~ 74 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD-EVKRKQYDAYGS 74 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHS-HHHHHHHHHSCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHhccC
Confidence 35789999999999999999999999999999999874 2456788899999986 889999999984
No 195
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.05 E-value=2.7e-11 Score=112.53 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=60.3
Q ss_pred cchhhhhccccCCCH--HHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTA--ADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~--~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+||++|||.+.++. .+||++||+++++|||||+.....+.+|.+|+++|++ +..|+.||.+|..
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d-~~~R~~~~~~~~~ 74 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED-GVKYAHQPDFGGF 74 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHH-HHHSCCSSCCSCC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCC-HHHHHHhhhcccc
Confidence 579999999999999 9999999999999999999988889999999999986 8999999988754
No 196
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.6e-10 Score=101.42 Aligned_cols=67 Identities=34% Similarity=0.500 Sum_probs=59.1
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
...+||++|||.++++..+|+++||+++++||||++... ..+..|.+++++|++ |..|+.||.+|..
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD-AKKRDIYDRYGSG 78 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSS-TTHHHHHHHTCCC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHcCcc
Confidence 357899999999999999999999999999999998754 245678899999986 8999999999843
No 197
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.04 E-value=1.3e-10 Score=100.73 Aligned_cols=65 Identities=34% Similarity=0.529 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+||.+|||.++++..+|+++||+++++||||++... ..+..+.+++++|++ |..|+.||.+|..
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d-~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSD-PRKREIFDRYGEE 70 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHTCGG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCC-HHHHHHHHHHccc
Confidence 5799999999999999999999999999999998755 345677889999986 8999999999843
No 198
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=2.6e-07 Score=108.49 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---C
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR-MREALEDCMMAATV---D 522 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~-~eeAl~~~~kALel---~ 522 (954)
.+...+..+...+-.|+++.|..+|++++...|. . .+|..........+. .+.....|+.|+.. +
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps-~----------~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d 81 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYN-L----------DLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY 81 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCC-H----------HHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCC-H----------HHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC
Confidence 4566677777777779999999999999999984 2 677777777777663 34566778888864 7
Q ss_pred CCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHH------------------------
Q 002199 523 PNFLKVYMRAAKCHL----VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ------------------------ 574 (954)
Q Consensus 523 P~~~~a~~~LA~iy~----~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~------------------------ 574 (954)
|.....|......+. ..++.+.+...|+++|.. |....+. +......+.
T Consensus 82 ~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~--lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~ 158 (493)
T 2uy1_A 82 WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSE--LWKDFENFELELNKITGKKIVGDTLPIFQSSFQ 158 (493)
T ss_dssp TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHH--HHHHHHHHHHHhccccHHHHHHHHhHHHHHHHH
Confidence 888888888777654 356788999999999985 5322111 111001000
Q ss_pred ---HHHh------HHHHHHHHHHHHHhcC---hHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 002199 575 ---KAQK------VTEYINCSGKLLEQKT---SEA---ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLC 639 (954)
Q Consensus 575 ---~~~~------~~~~l~~a~~ll~~g~---~~~---a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ 639 (954)
.... ...|... ..+..++ ..+ ...+...|++++...|..+.+|+..+..+...|+.++|..+|
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0000 0011111 1111121 111 224667899999999999999999999999999999999999
Q ss_pred HHhchhhhhhh
Q 002199 640 EHTLPVAEKNF 650 (954)
Q Consensus 640 ekaL~l~p~~~ 650 (954)
++++.. |.+.
T Consensus 237 erAi~~-P~~~ 246 (493)
T 2uy1_A 237 ERGIEM-SDGM 246 (493)
T ss_dssp HHHHHH-CCSS
T ss_pred HHHHhC-CCcH
Confidence 999999 8763
No 199
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.03 E-value=5.5e-11 Score=107.98 Aligned_cols=65 Identities=38% Similarity=0.567 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+||++|||.++++..+|+++||+++++||||++... ..+..|.+++++|++ +..|+.||.+|..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d-~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSD-KHKREIYDRYGRE 71 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhCcc
Confidence 4799999999999999999999999999999998753 345778899999986 8899999998844
No 200
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=101.17 Aligned_cols=67 Identities=34% Similarity=0.495 Sum_probs=58.8
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
...+||++|||.++++..+|+++||+++++||||++...+ .+..+.+++++|++ +..|+.||.+|..
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSN-PEKRKQYDQFGSG 74 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTCSC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCC-HHHHHHHHHcCcc
Confidence 3578999999999999999999999999999999997654 44577889999986 8899999999843
No 201
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.9e-10 Score=102.27 Aligned_cols=66 Identities=35% Similarity=0.481 Sum_probs=58.5
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++.... .+..|.+++++|.+ +..|+.||.+|.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSD-ANRRKEYDTLGH 73 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHS-SHHHHHHHHTCH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCC-HHHHHHHHHhCc
Confidence 3578999999999999999999999999999999998654 45677889999986 999999999884
No 202
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.01 E-value=5.7e-11 Score=110.01 Aligned_cols=82 Identities=30% Similarity=0.421 Sum_probs=66.2
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCCCC----CCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGYAC----RSS 935 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~~----~~~ 935 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+..|.+|+++|++ +..|+.||.+|..+ ...
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d-~~~R~~YD~~g~~~~~~~~~~ 93 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD-ATKRNIYDKYGSLGLYVAEQF 93 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcC-HHHHHHHHHhccccccccccc
Confidence 35789999999999999999999999999999999875 2455678899999986 89999999998551 122
Q ss_pred CCCcccccccc
Q 002199 936 RRQSRQDNWKT 946 (954)
Q Consensus 936 ~~~~~~~~~~~ 946 (954)
....|.++|..
T Consensus 94 ~~~~~~~~~~~ 104 (109)
T 2ctw_A 94 GEENVNTYFVS 104 (109)
T ss_dssp CTTHHHHHHHS
T ss_pred CCcchHHHhhc
Confidence 34456666654
No 203
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=98.99 E-value=1.9e-10 Score=102.32 Aligned_cols=66 Identities=38% Similarity=0.498 Sum_probs=58.6
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++... ..+..+.+++++|.+ |..|+.||.+|.
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~g~ 83 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSN-EEKRTNYDHYGS 83 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHS-HHHHHHHHHHTT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCC-HHHHHHHHHcCC
Confidence 367899999999999999999999999999999998754 445678889999986 889999999984
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.9e-10 Score=101.79 Aligned_cols=94 Identities=24% Similarity=0.395 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY------TK 794 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~------~~ 794 (954)
+..+..+|.+++..|+|++|+.+|++++.++ |..+.+++++|.++..+|++++|+..|+++++++|++ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4567789999999999999999999999999 7778999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
+++.+|.++..+|++++|+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999998888776654
No 205
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.8e-10 Score=101.28 Aligned_cols=66 Identities=36% Similarity=0.505 Sum_probs=58.4
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||+.... ..+..|.+++++|.+ +..|+.||.+|.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD-SKKRSLYDRAGC 77 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHCS
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhCc
Confidence 356899999999999999999999999999999998753 345678899999986 889999999884
No 206
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=98.96 E-value=3.2e-10 Score=101.71 Aligned_cols=66 Identities=36% Similarity=0.535 Sum_probs=59.5
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCC-ChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRS-EYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~-~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..+||++|||.++++..+|+++||+++++||||++. ....+..|.++|++|++ +..|+.||.+|..
T Consensus 7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~~~~ 73 (92)
T 2o37_A 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILND-PQKREIYDQYGLE 73 (92)
T ss_dssp CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTS-HHHHHHHHHHCHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHHHCHH
Confidence 578999999999999999999999999999999985 44567889999999986 8899999998854
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.95 E-value=5.4e-09 Score=91.24 Aligned_cols=86 Identities=23% Similarity=0.336 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+..+..+|..++..|+|++|+.+|++++...|.+. .+++++|.++..+|++++|+..|+++++++|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35678899999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcC
Q 002199 525 FLKVYMRAAKCHLVLG 540 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG 540 (954)
+..++..+|.++..+|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998765
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.94 E-value=8.9e-09 Score=94.96 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002199 466 EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENA 545 (954)
Q Consensus 466 eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeA 545 (954)
+|+..|+++++.+|.+. .+++++|.+|+.+|++++|+..|+++++++|.+..+++.+|.+|..+|++++|
T Consensus 3 ~a~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 3 AITERLEAMLAQGTDNM----------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CHHHHHHHHHTTTCCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 68999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhh
Q 002199 546 QHYYHKLLNSAAAV 559 (954)
Q Consensus 546 l~~yekaL~l~P~~ 559 (954)
+..|++++.+.|..
T Consensus 73 ~~~~~~al~~~~~~ 86 (115)
T 2kat_A 73 RQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc
Confidence 99999999998854
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.94 E-value=7.4e-09 Score=95.52 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
+|+..|++++..+ |.++.+++++|.+|..+|++++|+..|++++.++|.+..+++.+|.+|..+|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5889999999998 778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhH
Q 002199 819 LVSILENQS 827 (954)
Q Consensus 819 AL~l~p~~~ 827 (954)
++++.|...
T Consensus 79 al~~~~~~~ 87 (115)
T 2kat_A 79 GLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHT
T ss_pred HHHhccccc
Confidence 999988653
No 210
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=98.92 E-value=4.6e-10 Score=102.91 Aligned_cols=65 Identities=35% Similarity=0.566 Sum_probs=57.0
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+||++|||.++++..+|+++||+++++||||++.. . .....|.+++++|++ |..|+.||.+|..
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD-SQKRAAYDQYGHA 71 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTC-SHHHHHTTTSTTT
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHhhh
Confidence 579999999999999999999999999999999874 3 344567788999986 8999999999966
No 211
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.9e-10 Score=100.92 Aligned_cols=66 Identities=27% Similarity=0.314 Sum_probs=57.8
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+.+|.++|++|++ +..|+.||.+..
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~YD~~l~ 84 (99)
T 2yua_A 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGS-ATLRRKYDRGLL 84 (99)
T ss_dssp CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTS-HHHHHHHHHTCC
T ss_pred CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhcc
Confidence 36789999999999999999999999999999999864 3456778899999986 889999998653
No 212
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=98.88 E-value=2e-10 Score=106.47 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=58.5
Q ss_pred CCcchhhhhccccCC-CHHHHHHHHHHHHHhhCCCCCCC-------hhHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASD-TAADIKKAYRKAALKHHPDKRSE-------YDQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a-~~~eIkkAYrklAl~~HPDK~~~-------~~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.+++ +..+|+++||+++++||||+... ......+.+|+++|++ |..|+.||.+|.
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d-~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD-DEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhcc
Confidence 367899999999999 99999999999999999999876 2345678899999986 889999999884
No 213
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=98.87 E-value=7.9e-10 Score=99.61 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=56.8
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----------hhHHHHHHHHHHHCCCCCcccccccccC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----------YDQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----------~~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+..|.++|++|++ +..|+.||.+.
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~l 88 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN-EETKKKYDLQR 88 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSS-SSHHHHHHHHS
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHc
Confidence 35789999999999999999999999999999999763 1345678899999987 89999999866
No 214
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=98.86 E-value=1.8e-10 Score=114.36 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=57.8
Q ss_pred CcchhhhhccccCCC--HHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDT--AADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~--~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..+||++|||+++++ ..+||+|||++++++|||++.......++.+|+++|++ |..|+.||.+|..
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsd-p~kR~~YD~~G~~ 77 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED-GVKYAHQPDFGGF 77 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHH-HHHHHTSCGGGGC
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCC-HHHHHHHhccCCc
Confidence 357999999999998 59999999999999999999888888999999999986 8899999999953
No 215
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.84 E-value=2.3e-08 Score=117.05 Aligned_cols=149 Identities=12% Similarity=-0.015 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV----- 521 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel----- 521 (954)
.+......+..+..+|+|++|+.+|+++|++....- +..+...+..+.++|.+|..+|+|++|+..++++|++
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~l--g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l 385 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVF--ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY 385 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTB--CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 344456667778899999999999999999754432 2334457899999999999999999999999999986
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHH
Q 002199 522 ---DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598 (954)
Q Consensus 522 ---~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a 598 (954)
+|..+..+.+||.+|..+|+|++|+.+|++|+.+..
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~----------------------------------------- 424 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL----------------------------------------- 424 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 345577899999999999999999999999988521
Q ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 599 SSALERINEALS-ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 599 ~eAL~~l~kaL~-~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
+.+. ..|....++.+++.++..++.|++|...|.++.+..
T Consensus 425 --------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 425 --------VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp --------HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1211 123335566788999999999999999999986654
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.83 E-value=5.2e-09 Score=93.53 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVL-CYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~-~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.+.+|..++..|+|++|+..|+++++.+|.+. . +|+++|.+|+.+|++++|+..|+++++++|++..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGK----------DEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 35789999999999999999999999999986 7 999999999999999999999999999999998887
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.. +.+.+|+..|++++..+|++
T Consensus 73 ~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 73 AR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred HH--------HHHHHHHHHHHHHhccCccc
Confidence 54 67888999999988888764
No 217
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.83 E-value=3.7e-08 Score=85.83 Aligned_cols=83 Identities=28% Similarity=0.318 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
...+..+|.+++..+++++|+.+|++++.+. |....+++++|.++..+|++++|+.+|+++++++|.++.++..+|
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567788999999999999999999999998 677889999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 002199 801 ALHEMIR 807 (954)
Q Consensus 801 ~ly~~lg 807 (954)
.++..+|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998765
No 218
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.81 E-value=4.9e-08 Score=114.24 Aligned_cols=139 Identities=10% Similarity=-0.052 Sum_probs=114.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
..+..+..+|+|++|+.+|++++.+....... ..+..+..+.++|.+|..+|+|++|+.+|+++|.+.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~------------~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~ 381 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFAD------------TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY 381 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCT------------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34556778999999999999999864322110 122345678889999999999999999999999873
Q ss_pred ----cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 752 ----IESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL-----DENY---TKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 752 ----~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l-----dP~~---~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
+.++|..+..+++||.+|..+|+|++|+.+|++|+++ .|++ ...+..++.++..++.|++|...|+++
T Consensus 382 ~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566999999999999999999999999999999976 4555 556678899999999999999999998
Q ss_pred HHH
Q 002199 820 VSI 822 (954)
Q Consensus 820 L~l 822 (954)
.+-
T Consensus 462 ~~~ 464 (490)
T 3n71_A 462 REA 464 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 219
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.79 E-value=1.7e-09 Score=112.29 Aligned_cols=65 Identities=31% Similarity=0.522 Sum_probs=57.5
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||++||+++++||||++.. . .....+.+||++|++ |..|+.||.+|..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~-~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD-EDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTS-HHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHhccc
Confidence 479999999999999999999999999999999853 2 345678899999986 8999999999965
No 220
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.78 E-value=2.1e-06 Score=100.75 Aligned_cols=309 Identities=12% Similarity=-0.077 Sum_probs=182.0
Q ss_pred HcC-CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002199 460 KNN-NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV 538 (954)
Q Consensus 460 ~~g-~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~ 538 (954)
+.| ++..|...|++++...|. ++++.+...|+++|...| ....|.........
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~-------------------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~ 59 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS-------------------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRK 59 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC-------------------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence 345 377788888888877653 779999999999999988 77788877777766
Q ss_pred cCC-HHHHHHHHHHHHhh---chhhhhhHHHHHHHHH----HHHHHHhHHHHHHHHHH---------------HHHhcCh
Q 002199 539 LGE-IENAQHYYHKLLNS---AAAVCLDRRITIEAAD----GLQKAQKVTEYINCSGK---------------LLEQKTS 595 (954)
Q Consensus 539 lG~-~eeAl~~yekaL~l---~P~~~~~~~~~~ea~~----~l~~~~~~~~~l~~a~~---------------ll~~g~~ 595 (954)
.+. .+.....|+.++.. +|.....-........ ..+....+...+..+.. +......
T Consensus 60 ~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~ 139 (493)
T 2uy1_A 60 VSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNK 139 (493)
T ss_dssp HC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred hCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhcc
Confidence 663 45567788888874 3322111000110000 01111122222222211 0000000
Q ss_pred H-----------HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC---------HHHHHHHHHHhchhhhhhhhhhh
Q 002199 596 E-----------AASSALERINEALSISS-CSEKLLEMKADALYMLRK---------YEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 596 ~-----------~a~eAL~~l~kaL~~~P-~~~~~~~~lA~~~~~lg~---------~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
. ....|...|..+....+ .+...|..... +..++ ...+...|++++...|....
T Consensus 140 ~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~--~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~--- 214 (493)
T 2uy1_A 140 ITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLID--LEMENGMKLGGRPHESRMHFIHNYILDSFYYAEE--- 214 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH---
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHH--HHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHH---
Confidence 0 00012222232222211 12233333222 22222 34466788888887775532
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH---------HHHHHH----------
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE---------SSMSLA---------- 715 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~---------~~~~l~---------- 715 (954)
.|+..+..+...|+.+.|...|++++.. |........... .+....
T Consensus 215 --------------lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 215 --------------VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---------
T ss_pred --------------HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhh
Confidence 5778888899999999999999999999 876543211111 000000
Q ss_pred -HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCH
Q 002199 716 -GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG-QIADAIADCSLAMALDENYT 793 (954)
Q Consensus 716 -~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg-~~eeAi~~~ekAL~ldP~~~ 793 (954)
........|...+..+.+.+..+.|...|.+| . .| +....+|...|.+....+ +.+.|...|+.+++..|+.+
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~---~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NE---GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TS---CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CC---CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 00111234555666666778899999999999 3 32 224556777777777777 59999999999999889888
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
..+...+.....+|+.+.|...|+++
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888899999999888886
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.77 E-value=1.6e-08 Score=90.29 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI-CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~-~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
..+|..++..|++++|+..|++++.++ |.... +++++|.+|..+|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 357889999999999999999999998 67778 99999999999999999999999999999999988754
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhh
Q 002199 804 EMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+.+.+|+..|++++.+.|.+
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCC
T ss_pred ---HHHHHHHHHHHHHhccCccc
Confidence 77888999999999887754
No 222
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.75 E-value=2.7e-08 Score=89.94 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
|.++.+++++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|...+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 7889999999999999999999999999999999999999999999999999999999999999999876543
No 223
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=98.74 E-value=3.7e-09 Score=91.70 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=54.3
Q ss_pred cchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccC
Q 002199 866 LDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 866 ~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
.++|++|||.++ ++..+||++||+++++||||++.....+.+|.++|++|.+ +..|.. |.||
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~-~~~r~~-~~~g 74 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKT-EVYNLR-MNLG 74 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHH-HHHHHT-TCCS
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhh-HHHHHH-HhcC
Confidence 468999999999 9999999999999999999999888889999999999976 545544 5566
No 224
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=5.1e-09 Score=103.36 Aligned_cols=66 Identities=33% Similarity=0.373 Sum_probs=57.9
Q ss_pred CCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----------hHHHHHHHHHHHCCCCCcccccccccC
Q 002199 863 GEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----------DQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 863 ~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----------~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
....+||++|||+++++..+||++||+++++|||||.... .....+.+|+++|++ |..|+.||..+
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~d-p~~R~~Yd~~~ 82 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN-EETKREYDLQR 82 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSS-HHHHCHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHc
Confidence 3467999999999999999999999999999999998654 345678899999986 88999999754
No 225
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.71 E-value=8e-08 Score=86.77 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.+++.+|.+|+.+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999987753
No 226
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=7.5e-09 Score=92.26 Aligned_cols=58 Identities=28% Similarity=0.334 Sum_probs=48.5
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccc
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGR 923 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~ 923 (954)
..+||++|||.++++..+||++||+++++|||||+...+ .+..|.++|++|.+ +..|+
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d-~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLK-NIKSG 86 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHH-HHCCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCC-ccccc
Confidence 578999999999999999999999999999999996554 45567778888875 54443
No 227
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=98.67 E-value=8.6e-09 Score=91.40 Aligned_cols=50 Identities=30% Similarity=0.274 Sum_probs=42.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-------HHHHHHHHHHHC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-------QEQEIRKATKES 915 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-------~~e~~~~~~~~l 915 (954)
.++|++|||.+.+++.+||+|||++|++|||||+.+.. .+.++.++|++|
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL 89 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEF 89 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999986532 345666777766
No 228
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.59 E-value=2e-08 Score=85.30 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=48.0
Q ss_pred cchhhhhcccc-CCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCC
Q 002199 866 LDFYLILGVKA-SDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQ 917 (954)
Q Consensus 866 ~dyYkiLgv~~-~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~ 917 (954)
.++|++|||.+ +++..+|+++||+++++||||++.......++.+++++|.+
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~ 66 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEK 66 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhh
Confidence 47899999998 79999999999999999999998888888999999999865
No 229
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=98.56 E-value=4.4e-08 Score=86.55 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=46.1
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQ 917 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~ 917 (954)
..++|++|||.++++..+||++||+++++||||++... ..+.+|.++|++|.+
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999998763 445677888998865
No 230
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.56 E-value=7.5e-09 Score=114.22 Aligned_cols=64 Identities=33% Similarity=0.434 Sum_probs=0.0
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
..|||++|||.++++..+||+|||+++++||||++.... .+.++.+||++|++ +..|+.||.|+
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d-~~~R~~YD~~~ 93 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKD-EQRRAEYDQLW 93 (329)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhh-hhhhcccchhh
Confidence 468999999999999999999999999999999987543 45678889999997 99999999984
No 231
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.52 E-value=1.1e-06 Score=97.77 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=115.4
Q ss_pred HHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 473 QGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR---MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYY 549 (954)
Q Consensus 473 kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~---~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~y 549 (954)
++...-|.+.. +.-++.+|..++..+. +.+|+.+|++|++++|+++.+|..++.+|...
T Consensus 185 r~~~~~p~~~~--------Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~---------- 246 (372)
T 3ly7_A 185 TLQKILPHRGA--------LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR---------- 246 (372)
T ss_dssp HHHHHSCSSGG--------GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----------
T ss_pred HHhccCCCCHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------
Confidence 34455666653 2566677777777654 58999999999999999999999999998811
Q ss_pred HHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002199 550 HKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML 629 (954)
Q Consensus 550 ekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l 629 (954)
.. ..|.. .. .. .....++.. ..++...|.++.++..++.++...
T Consensus 247 -~~--~~~~~---~~-----------------~~------------~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 247 -HS--QHPLD---EK-----------------QL------------AALNTEIDN-IVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp -HH--HSCCC---HH-----------------HH------------HHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred -hc--cCCCc---hh-----------------hH------------HHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhC
Confidence 00 00100 00 00 000022221 134567799999999999999999
Q ss_pred cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 630 g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
|++++|+..+++++.++|.. .+|..+|.++...|++++|++.|.+|+.++|..+
T Consensus 291 gd~d~A~~~l~rAl~Ln~s~------------------~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMSW------------------LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCCH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CCHHHHHHHHHHHHhcCCCH------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999998642 1577899999999999999999999999999654
No 232
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.49 E-value=1.3e-06 Score=83.97 Aligned_cols=110 Identities=11% Similarity=-0.006 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
+++++|+.+|+++.+..... +. +|.+|...+.+++|+.+|+++.... ++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~----------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g------~~~ 58 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF----------------------GC--LSLVSNSQINKQKLFQYLSKACELN------SGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT----------------------HH--HHHHTCTTSCHHHHHHHHHHHHHTT------CHH
T ss_pred cCHHHHHHHHHHHHcCCCHh----------------------hh--HHHHHHcCCCHHHHHHHHHHHHcCC------CHH
Confidence 46889999999998865321 22 7888988899999999999999864 678
Q ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Q 002199 761 CFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHEM----IRDYTQAASDLQRLVSI 822 (954)
Q Consensus 761 ~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~----lg~~eeAi~~~ekAL~l 822 (954)
+++++|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.++
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999999999 89999999999999987 689999999999999 99999999999999988
No 233
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.49 E-value=1.3e-06 Score=84.09 Aligned_cols=121 Identities=15% Similarity=-0.003 Sum_probs=100.7
Q ss_pred cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH
Q 002199 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE 709 (954)
Q Consensus 630 g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~ 709 (954)
+++++|+.+|+++.+..... ++ +|.+|...+.+++|+.+|+++.+...
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~-------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~----------- 56 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF-------------------GC--LSLVSNSQINKQKLFQYLSKACELNS----------- 56 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-------------------HH--HHHHTCTTSCHHHHHHHHHHHHHTTC-----------
T ss_pred cCHHHHHHHHHHHHcCCCHh-------------------hh--HHHHHHcCCCHHHHHHHHHHHHcCCC-----------
Confidence 47899999999998876432 34 89999999999999999999987521
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHH
Q 002199 710 SSMSLAGTVRALLHHKSAGNEAFK----SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIAD 781 (954)
Q Consensus 710 ~~~~l~~~~~~~~~~~~lG~~~~~----~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~ 781 (954)
..++.++|.+|.. .+++++|+.+|++|.+.. ++.++++||.+|.. .+++++|+.+
T Consensus 57 -----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 119 (138)
T 1klx_A 57 -----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKT 119 (138)
T ss_dssp -----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -----------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC------CHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 3467789999999 899999999999999864 67899999999999 8999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHH
Q 002199 782 CSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 782 ~ekAL~ldP~~~~al~~lA~ 801 (954)
|+++.+. .++.+...++.
T Consensus 120 ~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 120 FEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHT--TCHHHHHHC--
T ss_pred HHHHHHC--CCHHHHHHHhh
Confidence 9999987 45666666553
No 234
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=98.46 E-value=3.7e-08 Score=98.34 Aligned_cols=59 Identities=27% Similarity=0.228 Sum_probs=51.3
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-------HHHHHHHHHHHCCCCCcccccc
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-------QEQEIRKATKESPQNSHYGRSS 925 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-------~~e~~~~~~~~l~~~~~~r~~y 925 (954)
.+||++|||.+.++..+||++||+++++|||||+.... .+.+|.+||++|++ +..|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD-~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN-QGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHH-HHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCC-HHhhhhC
Confidence 68999999999999999999999999999999986543 45678889999986 7777766
No 235
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=98.45 E-value=5.9e-08 Score=88.89 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=44.3
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-----------hhHHHHHHHHHHHCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-----------YDQEQEIRKATKESPQ 917 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-----------~~~~e~~~~~~~~l~~ 917 (954)
..|||.+||+.. ++..+||+|||+++++|||||+.. ...+.++.++|++|++
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd 102 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 478999999996 999999999999999999999753 2345677888999876
No 236
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=98.45 E-value=4.5e-08 Score=98.18 Aligned_cols=63 Identities=13% Similarity=0.211 Sum_probs=54.7
Q ss_pred CcchhhhhccccCCC--HHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCccccccccc
Q 002199 865 PLDFYLILGVKASDT--AADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSSDAY 928 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~--~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~yD~~ 928 (954)
..+||.+|||++.++ ..+|+++||+++++|||||..... ....+.++|++|++ |..|+.||..
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~d-p~~R~~Yd~~ 76 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKD-PLRRAEYLLS 76 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHH
Confidence 578999999999987 899999999999999999976442 34678899999986 9999999964
No 237
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=98.43 E-value=5.6e-08 Score=97.13 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=54.9
Q ss_pred chhhhhccccCC--CHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccccccC
Q 002199 867 DFYLILGVKASD--TAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 867 dyYkiLgv~~~a--~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
+||.+|||++.+ +..+|+++||+++++||||+..... ....+.++|++|++ |..|+.||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~d-p~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH-PLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHh
Confidence 799999999999 9999999999999999999986542 45678899999986 89999999764
No 238
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.41 E-value=3.4e-06 Score=93.85 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH-------HHHHH-HHH
Q 002199 448 CEMWRLRGNQAYKNNN---LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM-------REALE-DCM 516 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~---y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~-------eeAl~-~~~ 516 (954)
+-.++.+|..++..+. +.+|+.+|++||+++|+.. .+|..++.+|+....+ ..++. .+.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a----------~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT----------YARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 4556788888887654 5899999999999999997 8888888888632211 11111 111
Q ss_pred --HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 517 --MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 517 --kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
.++..+|..+.++..+|.++...|++++|+..+++++.++|. +..+..++..+...|+
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--------------------~~a~~llG~~~~~~G~ 325 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--------------------WLNYVLLGKVYEMKGM 325 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHTTC
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------------------HHHHHHHHHHHHHCCC
Confidence 234667888999999998888889999999999998888753 2223444445555555
Q ss_pred hHHHHHHHHHHHHHHhcCCCCH
Q 002199 595 SEAASSALERINEALSISSCSE 616 (954)
Q Consensus 595 ~~~a~eAL~~l~kaL~~~P~~~ 616 (954)
++ +|++.|.+|+.++|..+
T Consensus 326 ~~---eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 326 NR---EAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HH---HHHHHHHHHHHHSCSHH
T ss_pred HH---HHHHHHHHHHhcCCCcC
Confidence 55 45555555555555443
No 239
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.40 E-value=1.2e-06 Score=100.95 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=85.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc----cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHH
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTN----IESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL--------DENYTK 794 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~----~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--------dP~~~~ 794 (954)
....+..+|+|++|+..|++++.+. ...+|..+.++.++|.+|..+|+|++|+.+++++|++ +|....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3445678899999999999999873 2445888999999999999999999999999999976 344466
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.+++||.+|..+|++++|+..|++|+++...
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999643
No 240
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.40 E-value=2.3e-06 Score=98.59 Aligned_cols=98 Identities=10% Similarity=0.024 Sum_probs=84.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcc----CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHH
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNI----ESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL--------DENYTKA 795 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~----~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--------dP~~~~a 795 (954)
+......|+|++|+.+|+++|.+.. ..+|..+.++.++|.+|..+|+|++|+.+|+++|++ +|+....
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 3344457899999999999998732 345888999999999999999999999999999976 3445678
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 796 VSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 796 l~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+.+||.+|..+|+|++|+..|++|+++...
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999543
No 241
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.39 E-value=1e-06 Score=78.93 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 756 PFAAICFCNRAAALQALGQ---IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~---~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
|.++.++..+|.+++..++ .++|...++++|+++|+++.+++.+|.+++..|+|++|+.+|+++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7788999999999987766 799999999999999999999999999999999999999999999999665
No 242
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.37 E-value=2.1e-05 Score=84.20 Aligned_cols=86 Identities=13% Similarity=0.000 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHhhccCCchh--hHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-h
Q 002199 736 RYTEAVEHYTVALSTNIESRPF--AAICFCNRAAALQAL-----GQIADAIADCSLAMALDENY-TKAVSRRAALHEM-I 806 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~--~a~~~~~lA~~y~~l-----g~~eeAi~~~ekAL~ldP~~-~~al~~lA~ly~~-l 806 (954)
....|...+++|++++ |. ...+|..+|.+|... |+.++|..+|++||+++|+. +.+++.+|..+.. +
T Consensus 178 ~l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 3678999999999999 55 677999999999996 99999999999999999975 9999999999988 5
Q ss_pred cCHHHHHHHHHHHHHHhhh
Q 002199 807 RDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 807 g~~eeAi~~~ekAL~l~p~ 825 (954)
|++++|..++++++.+.|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999664
No 243
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=98.34 E-value=1.3e-07 Score=97.36 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=53.5
Q ss_pred CcchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccccc
Q 002199 865 PLDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 865 ~~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
..+||.+|||++. ++..+|+++||+++++||||++.... ....|.++|++|++ |..|+.||.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsd-p~~R~~Yd~ 114 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA-PLSRGLYLL 114 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHH
Confidence 5789999999986 68899999999999999999986432 23578899999987 899999984
No 244
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.31 E-value=2.2e-06 Score=98.61 Aligned_cols=102 Identities=7% Similarity=-0.033 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV--------DPN 524 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--------~P~ 524 (954)
..+......|+|++|+.+|+++|++....- +..+...+..+.++|.+|..+|+|++|+.+++++|++ +|+
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~l--g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVF--EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTB--CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCcc--ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 334444567899999999999999754321 2233457899999999999999999999999999986 355
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
.+..+.+||.+|..+|+|++|+.+|++|+++.
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999863
No 245
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.30 E-value=4.1e-06 Score=74.97 Aligned_cols=66 Identities=18% Similarity=0.080 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 493 LCYSNRAATRISLGR---MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~---~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
.++..+|.+++..++ .++|...++++|+++|+++.+++.+|.+++..|+|++|+.+|+++++.+|.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 899999999987776 799999999999999999999999999999999999999999999999997
No 246
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=98.30 E-value=1.7e-07 Score=94.26 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=56.9
Q ss_pred cCCCcchhhhh------cccc-CCCHHHHHHHHHHHHHhhCCCCCC-ChhHHHHHHHHHHHCCCCCcccccccc
Q 002199 862 KGEPLDFYLIL------GVKA-SDTAADIKKAYRKAALKHHPDKRS-EYDQEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 862 ~~~~~dyYkiL------gv~~-~a~~~eIkkAYrklAl~~HPDK~~-~~~~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
.....+||.+| |+.+ +++..+|+++||+++++||||++. .......+.++|++|++ |..|+.||.
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~d-p~~R~~Yd~ 79 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKD-PLRRSQYML 79 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHS-HHHHHHHHH
T ss_pred CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcC-hHHHHHHHH
Confidence 34567999999 4654 899999999999999999999987 55677889999999987 999999997
No 247
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.26 E-value=7.3e-06 Score=74.62 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC---chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIES---RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~---~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
..+.+|..++..++|..|+.+|++|+...+.. ......++.++|.++.++|++++|+..+++++.++|++..++.++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 35678999999999999999999999875322 246789999999999999999999999999999999999988877
Q ss_pred H
Q 002199 800 A 800 (954)
Q Consensus 800 A 800 (954)
+
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 6
No 248
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.26 E-value=9.2e-08 Score=118.83 Aligned_cols=66 Identities=30% Similarity=0.510 Sum_probs=39.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..+||+|||+++++|||||+.. . .....+.+||++|++ |..|+.||.+|..
T Consensus 20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~-~~~r~~yd~~~~~ 89 (780)
T 3apo_A 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD-EDLRKKYDKYGEK 89 (780)
T ss_dssp ---CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHS-HHHHHHHTTC---
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcC-hHHHHHHHhhccc
Confidence 5789999999999999999999999999999999853 2 344577789999986 8999999999965
No 249
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.23 E-value=2.7e-05 Score=83.33 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=84.8
Q ss_pred hcCCCCHHHHHHHHHHHHH---c--c------CHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 610 SISSCSEKLLEMKADALYM---L--R------KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 610 ~~~P~~~~~~~~lA~~~~~---l--g------~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
..+|.+++++++.|.+... . | ...+|...++++++++|..... -+|..+|.+|.
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G---------------sA~~~LG~lY~ 210 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG---------------AVWNVLTKFYA 210 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH---------------HHHHHHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC---------------HHHHHHHHHHH
Confidence 4578899999998887654 1 2 4578999999999999974221 16788999998
Q ss_pred Hc-----CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcc
Q 002199 679 CI-----GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK-SGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 679 ~l-----G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~-~g~~eeAi~~y~kAL~l~~ 752 (954)
.. |+.++|..+|++++++.|.... ..+...|..++. .+++++|..++++|+...|
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~LnP~~~i-------------------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRYCSAHDP-------------------DHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHHCCTTCS-------------------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred hCCCccCCCHHHHHHHHHHHHHhCCCCCc-------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 85 8999999999999999885422 234456777776 4889999999999988876
Q ss_pred CC
Q 002199 753 ES 754 (954)
Q Consensus 753 ~~ 754 (954)
..
T Consensus 272 ~~ 273 (301)
T 3u64_A 272 ES 273 (301)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 250
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.23 E-value=6.3e-06 Score=94.84 Aligned_cols=106 Identities=13% Similarity=-0.043 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV------ 521 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel------ 521 (954)
+..+......+..+|+|++|+..|+++|++....- +..+...+..+.++|.+|..+|+|++|+.+++++|++
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l--g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERL--PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC--CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC--CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence 34444555667889999999999999998754321 2334457899999999999999999999999999986
Q ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 522 --DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 522 --~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
+|..+..+++||.+|..+|++++|+.+|++|+++
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455778999999999999999999999999986
No 251
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.18 E-value=1e-05 Score=73.60 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
++..+.+|..++..++|..|+..|++|++..+.... .......++..+|.+|+++|+++.|+..+++++.++|++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 456789999999999999999999999997543210 12235689999999999999999999999999999999998
Q ss_pred HHHHHH
Q 002199 528 VYMRAA 533 (954)
Q Consensus 528 a~~~LA 533 (954)
++.+++
T Consensus 82 ~~~n~~ 87 (104)
T 2v5f_A 82 ANGNLK 87 (104)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 887776
No 252
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=1.5e-05 Score=77.42 Aligned_cols=88 Identities=15% Similarity=0.034 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHH
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG---RMREALEDCMMAATVD-P-NFLKVYMRAAKCHL 537 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg---~~eeAl~~~~kALel~-P-~~~~a~~~LA~iy~ 537 (954)
....+.+.|.+.+..++.+. .+.+++|.++.+.. +.++++..++.+++.+ | ....++|.||..|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~----------~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~ 82 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSK----------STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 82 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCH----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcH----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence 34567788888888888665 99999999999988 6779999999999999 7 66899999999999
Q ss_pred HcCCHHHHHHHHHHHHhhchhhh
Q 002199 538 VLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 538 ~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
++|+|++|+.+++++|+++|++.
T Consensus 83 kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HccCHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999999999873
No 253
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.03 E-value=2.2e-05 Score=76.30 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG---QIADAIADCSLAMALD-E-NYTKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg---~~eeAi~~~ekAL~ld-P-~~~~al~~lA~ly~~lg~~ee 811 (954)
...+.+.|.+.+..+ +....+.+++|+++.+.. ++.+++..++.+++.+ | ...+++|.+|..|+++|+|++
T Consensus 14 l~~~~~~y~~e~~~~----~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 455667777777766 567899999999999988 7779999999999998 7 578999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 002199 812 AASDLQRLVSILENQSAE 829 (954)
Q Consensus 812 Ai~~~ekAL~l~p~~~~~ 829 (954)
|+++++++|++.|++.+.
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 999999999996665443
No 254
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=97.71 E-value=2.9e-05 Score=64.04 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=43.9
Q ss_pred hhhhhccccC---CCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHC
Q 002199 868 FYLILGVKAS---DTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES 915 (954)
Q Consensus 868 yYkiLgv~~~---a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l 915 (954)
-|+||||.+. ++..+|+++||+|...+||||+-.+-....+.+|.+.+
T Consensus 6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l 56 (65)
T 2guz_B 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERL 56 (65)
T ss_dssp HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 4899999999 89999999999999999999998888888888887776
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.48 E-value=0.0049 Score=72.16 Aligned_cols=165 Identities=11% Similarity=0.044 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC---------CHHHH
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG---------KLEVA 686 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG---------~~eeA 686 (954)
++..+-..+.+.|++++|+.+|+++.... |+. ..|..+-.++...+ .+++|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~------------------~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQ------------------YHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH------------------HHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH------------------hHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 44555678889999999999999987642 221 13334434444333 37889
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHH
Q 002199 687 LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRA 766 (954)
Q Consensus 687 l~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA 766 (954)
..+|++.....-.. . ...|..+-..|.+.|++++|+++|++...... .-+...|..+-
T Consensus 90 ~~lf~~M~~~G~~P-d------------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~---~Pd~~tyn~lI 147 (501)
T 4g26_A 90 FDIFKQMIVDKVVP-N------------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGI---QPRLRSYGPAL 147 (501)
T ss_dssp HHHHHHHHHTTCCC-C------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC---CCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-C------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCccceehHHH
Confidence 99998876542111 1 23456677888999999999999999887642 23567788888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 767 AALQALGQIADAIADCSLAMALD-ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 767 ~~y~~lg~~eeAi~~~ekAL~ld-P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
..|.+.|++++|+..|+...+.. .-+...|..+-.+|.+.|+.++|.+.|++..+.
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753 225678889999999999999999999987654
No 256
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.31 E-value=0.0017 Score=60.88 Aligned_cols=90 Identities=13% Similarity=-0.004 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHH
Q 002199 461 NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMRE---ALEDCMMAATVD-P-NFLKVYMRAAKC 535 (954)
Q Consensus 461 ~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~ee---Al~~~~kALel~-P-~~~~a~~~LA~i 535 (954)
......+...|.+.+...+... .+-+++|.++.+..+... +|..++..+..+ | .....++.||..
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~----------~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSK----------STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCH----------HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcH----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3445567778888888776554 899999999999887776 999999999987 5 567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
++++|+|.+|+.+++.+|+..|++.
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999873
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.19 E-value=0.0014 Score=64.22 Aligned_cols=102 Identities=11% Similarity=-0.022 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------C
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD------P 523 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~------P 523 (954)
+++.....++..|.|+.|+-....++.+...++.. ......+.++..+|.+++..++|..|+..|++||.+. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~-~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPEL-FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTS-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccc-ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46777888999999999999999988775443310 0122346799999999999999999999999997642 1
Q ss_pred -------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 524 -------------------NFLKVYMRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 524 -------------------~~~~a~~~LA~iy~~lG~~eeAl~~yeka 552 (954)
...+..+.+|.||..++++++|+..++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11368899999999999999999998764
No 258
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.10 E-value=0.0023 Score=59.96 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCHH
Q 002199 736 RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD---AIADCSLAMALD-E-NYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ee---Ai~~~ekAL~ld-P-~~~~al~~lA~ly~~lg~~e 810 (954)
....+...|.+++..+ +....+.+++|+++.+..+... +|..++..+..+ | ..-+.+|.+|..++++|+|+
T Consensus 16 ~l~~~~~~y~~e~~~~----~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 3445666777777665 5677888899999988776555 999999988876 5 56788999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHH
Q 002199 811 QAASDLQRLVSILENQSAE 829 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~~ 829 (954)
+|+.+++.+|++.|++.++
T Consensus 92 ~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCHHH
Confidence 9999999999996665443
No 259
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.06 E-value=0.029 Score=65.55 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=120.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcccccCCchHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSV--PLSETAGCCIKPLVLCYSNRAATRISLG---------RMREALEDCMMAA 519 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~--P~~~~~~~~~~~la~~~~~lA~~y~~lg---------~~eeAl~~~~kAL 519 (954)
+...=..+.+.|++++|+.+|+++.+.. |+. ..|..+-.++...+ ..++|++.|+...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~-----------~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQ-----------YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH-----------HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-----------hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 3444467789999999999999998763 332 56666655555443 3688999998877
Q ss_pred hcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 520 TVD--PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS--AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 520 el~--P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l--~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
... | +..+|..+-..|.+.|++++|+..|++.... .|+ ...+-.+...+...|+.
T Consensus 98 ~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--------------------~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 98 VDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--------------------LRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--------------------HHHHHHHHHHHHHTTCH
T ss_pred HhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------------------cceehHHHHHHHHCCCH
Confidence 653 4 4568889999999999999999999998764 343 33455566677788888
Q ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 596 EAASSALERINEALSIS-SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
+ +|+..+.+..... .-+...|..+-.+|...|++++|..++++..+.
T Consensus 157 ~---~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 157 D---KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp H---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 8 6777777776543 225667888899999999999999999987654
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.84 E-value=0.0065 Score=59.41 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---C--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------C-
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNI---E--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALD------E- 790 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~---~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld------P- 790 (954)
.+......++..+.|+.|+-....++.+.. + .+...+.++..+|.+++..++|..|+..|++||.+. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345567778899999999999999887742 1 123567789999999999999999999999997542 1
Q ss_pred ------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 791 ------------------NYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 791 ------------------~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
...+..|.+|.||..++++++|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1236889999999999999999998764
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.69 E-value=0.12 Score=58.16 Aligned_cols=124 Identities=11% Similarity=-0.090 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|.+|+..|+|.+|+..+.+.++.-..... ....+..+.....+|...+++.++...|.+|...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--------------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDD--------------KNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC--------------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--------------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 36788999999999999998887764322111 1123445556778889999999999999998766
Q ss_pred cc---CCchhhHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcC
Q 002199 751 NI---ESRPFAAICFCNRAAALQ-ALGQIADAIADCSLAMALD-----ENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 751 ~~---~~~p~~a~~~~~lA~~y~-~lg~~eeAi~~~ekAL~ld-----P~~~~al~~lA~ly~~lg~ 808 (954)
.. .++...+.+...-|.+++ ..++|.+|..+|-.++.-. |....++..++.+.+..++
T Consensus 169 ~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 169 ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 31 122356777777888888 8999999999998887432 1122344445555555555
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.47 E-value=0.2 Score=56.36 Aligned_cols=176 Identities=15% Similarity=0.051 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 617 KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 617 ~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l 696 (954)
.+.+.+|.+|...|++++-..++......-+.-.. .++.+..+..+..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--------------------------------ak~~k~v~~l~~~ 67 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISK--------------------------------AKAAKLVRSLVDM 67 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCH--------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch--------------------------------HHHHHHHHHHHHH
Confidence 45678899999999999988888776554332111 0111222222221
Q ss_pred C---CCCcchhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHH
Q 002199 697 G---SISDRYGSEILESSMSLAGTVRAL----LHHKSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAA 767 (954)
Q Consensus 697 ~---p~~~~~~~~~l~~~~~l~~~~~~~----~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~ 767 (954)
. |........+...++.+....+.. ..-..+|..|+..|+|.+|+..+.+.+.... ++......++.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~ 147 (394)
T 3txn_A 68 FLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESK 147 (394)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 1 222221222222223332222111 1223689999999999999999999887532 234567788888999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhh
Q 002199 768 ALQALGQIADAIADCSLAMALD---ENY----TKAVSRRAALHE-MIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ld---P~~----~~al~~lA~ly~-~lg~~eeAi~~~ekAL~l~p 824 (954)
+|..++++.++...+.+|.... +.+ +.....-|.+++ ..++|..|..+|-.+++-+.
T Consensus 148 ~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 148 TYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 9999999999999999987553 122 233444578888 89999999999998876554
No 263
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.42 E-value=0.024 Score=54.34 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNL------TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y------~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
...+.|.......-+.|+. ++-++.|++|+...|... ...-...+.+|...|.. ...++.++|.+.|+.++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 3456676666666777888 888999999999988753 12233457777777755 67799999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
.+...++.+|+..|..-.++|+...|...+.+++.+.|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999885
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.33 E-value=0.042 Score=51.62 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRY---TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~---eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
...++.|..+.+..+. .++|..++..+...| ...-.+++.+|..++++|+|++|.++++.+|++.|++.+|...
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~---~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3455677777777654 478999999888762 3578899999999999999999999999999999999888766
Q ss_pred HHHHHH
Q 002199 799 RAALHE 804 (954)
Q Consensus 799 lA~ly~ 804 (954)
...+-.
T Consensus 118 k~~Ie~ 123 (134)
T 3o48_A 118 KSMVED 123 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 265
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.19 E-value=0.18 Score=61.70 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHh
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEHT 642 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~eka 642 (954)
.+...|..+|+.++..++++.|+.+|.++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556666666666666666666665554
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.15 E-value=0.051 Score=51.71 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRY---TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~---eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
..++.|+.+...... .++|.+++..+...| ...-.+++.+|..++++|+|.+|.++++.+|+++|++.+|....
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~---~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC---STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 455677777776654 468888888888663 25778899999999999999999999999999999998876554
Q ss_pred HHH
Q 002199 800 AAL 802 (954)
Q Consensus 800 A~l 802 (954)
..+
T Consensus 118 ~~I 120 (144)
T 1y8m_A 118 SMV 120 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.15 E-value=0.035 Score=52.83 Aligned_cols=80 Identities=11% Similarity=-0.077 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 447 TCEMWRLRGNQAYKNNNL---TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y---~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
..++.++.|..+.+..+- .++|.+++..+...|... -.+++.+|..++++|+|.+|+.+++.+|++.|
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~---------RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---------RECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch---------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 456677888888887654 479999999999888654 38999999999999999999999999999999
Q ss_pred CcHHHHHHHHHH
Q 002199 524 NFLKVYMRAAKC 535 (954)
Q Consensus 524 ~~~~a~~~LA~i 535 (954)
++..+......+
T Consensus 109 ~n~QA~~Lk~~I 120 (144)
T 1y8m_A 109 NNKQVGALKSMV 120 (144)
T ss_dssp CCHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 998776554433
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.10 E-value=0.033 Score=52.38 Aligned_cols=79 Identities=10% Similarity=-0.108 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 448 CEMWRLRGNQAYKNNN---LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~---y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
..+.++.|..+.+..+ ..++|.+++..++..|... -.+++.+|..++++|+|++|+.+++.+|++.|+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~---------Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---------RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4567778888887764 4579999999998887543 389999999999999999999999999999999
Q ss_pred cHHHHHHHHHH
Q 002199 525 FLKVYMRAAKC 535 (954)
Q Consensus 525 ~~~a~~~LA~i 535 (954)
+..|......+
T Consensus 111 N~QA~~Lk~~I 121 (134)
T 3o48_A 111 NKQVGALKSMV 121 (134)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 98776655443
No 269
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.25 Score=60.33 Aligned_cols=19 Identities=21% Similarity=-0.031 Sum_probs=9.6
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 002199 496 SNRAATRISLGRMREALED 514 (954)
Q Consensus 496 ~~lA~~y~~lg~~eeAl~~ 514 (954)
...+..+...|.+++|++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~ 651 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNI 651 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHheec
Confidence 3444445555555555543
No 270
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.93 E-value=0.12 Score=58.30 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-------c-----------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIES-------R-----------PFAAICFCNRAAALQALGQIADAIADCSLA 785 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-------~-----------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekA 785 (954)
+...|......++.+.|+..+.+|+.+.... . .....+...++.++...|++.+|+..+..+
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344555667899999999999999884211 0 112234556778888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 786 MALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 786 L~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+..+|-+..++..+-.+|...|+..+|+..|+++.+.
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988776
No 271
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.047 Score=66.37 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKL 693 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ka 693 (954)
..++...++.++..|+|+-|+.+.++++...|..+. .|+.|+.+|..+|+|+.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~-----------------tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE-----------------SWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH-----------------HHHHHHHHHHHhccHHHHHHHHhcC
Confidence 346777788899999999999999999999998876 8999999999999999999988876
No 272
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.64 E-value=0.15 Score=57.33 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccccc----CCch--------HHHHHHHHHHHHHHcCCHHHHH
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGC----CIKP--------LVLCYSNRAATRISLGRMREAL 512 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~----~~~~--------la~~~~~lA~~y~~lg~~eeAl 512 (954)
-...+.+...|......|+...|+..|.+|+.+.....-.+. |... ...++..++.+++..|++.+|+
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 344556667777777889999999999999998754432211 1111 3456667888899999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 513 EDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 513 ~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
..+..++..+|-+-.+|..+-.+|...|+..+|+..|+++..
T Consensus 192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998755
No 273
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.35 E-value=0.21 Score=47.96 Aligned_cols=117 Identities=6% Similarity=-0.118 Sum_probs=87.1
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEI------ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK 593 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~------eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g 593 (954)
-+.|++++.|+.....+...|+. +.-++.|++|+..-|... .+ ...+. +.-|+..|.. ...+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~--------~wrrY--I~LWIrYA~~-~ei~ 74 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YG--------QNESF--ARIQVRFAEL-KAIQ 74 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GT--------TCHHH--HHHHHHHHHH-HHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cc--------cHHHH--HHHHHHHHHH-HHhc
Confidence 46799999999999999999999 889999999999777532 11 11111 1223333322 3446
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 594 TSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
+.+ +|-+.|+.++.+....+.+|.+.|+.-.++|+...|..++.+++.+.|...+
T Consensus 75 D~d---~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 75 EPD---DARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp CGG---GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred CHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 666 6777888888778788999999999999999999999999999999987643
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.21 E-value=4.4 Score=48.20 Aligned_cols=129 Identities=10% Similarity=-0.030 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
.++...+...+.+.|...+.........+.. ........++..++..+...++..++.++....
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~----------------~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~ 282 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNED----------------QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH----------------HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHH----------------HHHHHHHHHHHHHHHcCCChHHHHHHHhccccC
Confidence 3444455566888998888876543322211 111122234444555554667777777765433
Q ss_pred cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 752 IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 752 ~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
..... ...++...+..+++..|..+|...-.-......+.|.+|.++..+|+.++|...|+++..
T Consensus 283 ----~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 283 ----QSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp ----CCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----CChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 11111 223333345679999999999775443335688899999999999999999999999875
No 275
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.14 Score=62.13 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
..++..-+..++..|+|+-|+...++|+...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456666777888999999999999999999999999999999999999999999877654
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=2.4 Score=48.37 Aligned_cols=103 Identities=12% Similarity=0.014 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCC----
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTN--IESRPFAAICFCNRAAALQALGQIADAIADCSLAMA---LDENY---- 792 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~--~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~---ldP~~---- 792 (954)
.....++.++...|+|.+|...+.....-. ..+......++.....+|+..+++..|...+.++.. -.+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 334568999999999999999999876432 122345677888889999999999999999998742 12333
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 793 TKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 793 ~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
...+...|.++...++|.+|..+|..++....
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 34566779999999999999999999987643
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=2.2 Score=48.65 Aligned_cols=106 Identities=11% Similarity=-0.031 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
....|+.+|...|++.+|...+.....-.-.. ......+..+.....+++..++|.+|...+.++.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--------------~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGS--------------MEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678999999999999999999875321111 1122345566677888999999999999999975
Q ss_pred hh---ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 749 ST---NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 749 ~l---~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
.. .+..+.....++...|.++...++|.+|..+|..++..
T Consensus 205 ~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 205 KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 32 22222356678888899999999999999999988754
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.48 E-value=1.9 Score=41.91 Aligned_cols=93 Identities=14% Similarity=0.004 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c-------
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT--V------- 521 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe--l------- 521 (954)
-..++..++-.|+|..|+-++.. .+. +...+..+.||..+++|..|+..++..|+ +
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~------lNT---------~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d 100 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK------LNT---------CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD 100 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT------CCB---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred HhhhhhhhhhcchHhHHHHHHHh------cch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence 35678889999999998876542 222 37788899999999999999999999993 2
Q ss_pred --------CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 522 --------DPNFL-KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 522 --------~P~~~-~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
+|.+- -.+..+|.++.+.|.-+||+.+|.......|-
T Consensus 101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 23333 34667899999999999999999999988773
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.48 E-value=1.4 Score=46.52 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=86.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHH
Q 002199 501 TRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVT 580 (954)
Q Consensus 501 ~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~ 580 (954)
.+++.|..++|++.+...|+.+|.+......+..++.-.|+++.|..-++.+.+++|.....-. .+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~-------~yr~l---- 74 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS-------QLRHL---- 74 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH-------HHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH-------HHHHH----
Confidence 4577899999999999999999999999999999999999999999999999999997521110 00000
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALS--------ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~--------~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
+.|...=.+.+. ..|.........+......|+.++|..+-.++++..|..
T Consensus 75 ------------------I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 75 ------------------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ------------------HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ------------------HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 001110011111 112223344556777778899999999999999887654
No 280
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.20 E-value=1.9 Score=41.90 Aligned_cols=186 Identities=13% Similarity=0.049 Sum_probs=107.4
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 612 SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQ 691 (954)
Q Consensus 612 ~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ 691 (954)
-|..++....++..++..|+|..|+-++...-... +.+.-+.+|..+.+|..|+..++
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT~T----------------------s~YYk~LCy~klKdYkkA~~~le 86 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHKLNTCT----------------------SKYYESLCYKKKKDYKKAIKSLE 86 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHTCCBHH----------------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHhcchHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777888999999999999988776532211 33456789999999999999999
Q ss_pred HHHh--hC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHH---
Q 002199 692 KLEQ--VG--SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCN--- 764 (954)
Q Consensus 692 kal~--l~--p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~--- 764 (954)
+.+. ++ |+..... ... +......-.-+..+|.++.+.|+-++||.+|.......+--.|..-.++.|
T Consensus 87 ~il~~kvd~d~~~d~~~----~~f--fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp 160 (242)
T 3kae_A 87 SILEGKVERDPDVDARI----QEM--FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVP 160 (242)
T ss_dssp HHHTTCSBCCCCCCHHH----HTT--SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCC
T ss_pred HHHhcccccCccccccc----cee--eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCC
Confidence 9994 33 2221110 000 000011112345579999999999999999999887763221211111111
Q ss_pred ----------HHHHHHHhcCHHHHHHH--------HHHHHHhCCCCHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 765 ----------RAAALQALGQIADAIAD--------CSLAMALDENYTKA-VSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 765 ----------lA~~y~~lg~~eeAi~~--------~ekAL~ldP~~~~a-l~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
++.--.+...+...+.. .++-...-|..... ....|.-|+.+|-.++...+|..+-+.+|.
T Consensus 161 ~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 161 QKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp CCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 00000000111111111 22222233543322 234567889999999999999999888663
No 281
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.73 E-value=2.7 Score=41.47 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=39.9
Q ss_pred HHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 624 DALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 624 ~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
.+.+..|+++.|.++.+.+ + +.. .|..||...+..|+++-|..+|+++-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~--~~~-----------------~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---N--DSI-----------------TWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---C--CHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh---C--CHH-----------------HHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4567899999999988765 1 111 58899999999999999999999874
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.86 E-value=0.5 Score=53.81 Aligned_cols=101 Identities=9% Similarity=0.008 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD---PN 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~---P~ 524 (954)
..++..+|..|++.|+++.|+++|.++........ ..+.++..+..+++..++|..+...+.++..+. ++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence 34678899999999999999999999998765542 457889999999999999999999999987652 22
Q ss_pred c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 525 F---LKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 525 ~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
. .......|.++...++|.+|...|-.++.-
T Consensus 204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1 234556678888899999999999887654
No 283
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.71 E-value=3.5 Score=40.67 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=43.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
...+..|+++.|.+.++.. +....|..||...+..|+++-|..+|.++-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3446899999999988765 5678999999999999999999999998644
No 284
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.52 E-value=1.6 Score=56.18 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=107.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccc-------------ccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETA-------------GCCIKPLVLCYSNRAATRISLGRMREALEDCMM 517 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~-------------~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~k 517 (954)
-+.+|..++..|++++|..+|.+|-......... ......+...|+.....+.+.+.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4889999999999999999999874322111000 001112356778888899999999999999999
Q ss_pred HHhcCC-CcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002199 518 AATVDP-NFL----KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ 592 (954)
Q Consensus 518 ALel~P-~~~----~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~ 592 (954)
||+..+ +.. ..|.++-..++.+|+|++|...+... |+....+..+......+-....+...+. +--.
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~----pd~~~r~~cLr~LV~~lce~~~~~~L~~----lpf~ 996 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL----STTPLKKSCLLDFVNQLTKQGKINQLLN----YSMP 996 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH----HHSSSCHHHHHHHHHHHHHHCCHHHHHH----HTTT
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHhCCChhhhhC----CCCc
Confidence 998754 332 25778889999999999997766432 3322222222222222221111111111 1113
Q ss_pred cChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHhchhh
Q 002199 593 KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAI-QLCEHTLPVA 646 (954)
Q Consensus 593 g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi-~~~ekaL~l~ 646 (954)
|..++..+.|..-.+....-...+.+|..|=-.++..|+|..|. ..|+++.++.
T Consensus 997 gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B 997 TLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhh
Confidence 44444444444332222111122345555555666777776554 4566666554
No 285
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.43 E-value=1.3 Score=51.28 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a 528 (954)
..+..+|+.......+..|..+|.+|+.+.|.+. ..|..+|.+....|+.-+|+-+|.++|....-++.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G----------~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a 222 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----------QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC----------chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhH
Confidence 3667889999889999999999999999999998 899999999999999999999999999887778888
Q ss_pred HHHHHHHHHH
Q 002199 529 YMRAAKCHLV 538 (954)
Q Consensus 529 ~~~LA~iy~~ 538 (954)
..++..++..
T Consensus 223 ~~nL~~~f~~ 232 (497)
T 1ya0_A 223 STNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776654
No 286
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.27 E-value=2.5 Score=44.55 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=81.3
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc------
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV------ 660 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~------ 660 (954)
..++..+..+ +++..+...++..|.+......+.++|.-.|+|+.|...++.+.+++|............+
T Consensus 5 ~~ll~~g~L~---~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 5 KNALSEGQLQ---QALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHTTTTCHH---HHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHH---HHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH
Confidence 3456677777 7888889999999999999999999999999999999999999999997654332211111
Q ss_pred -------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 661 -------------TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 661 -------------~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
..+.. -.....-+......|+.++|...-.++++..|...
T Consensus 82 ~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 00000 11233345666678899999998888888776554
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.17 E-value=5.3 Score=46.06 Aligned_cols=149 Identities=9% Similarity=-0.029 Sum_probs=62.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHH
Q 002199 499 AATRISLGRMREALEDCMMAAT-----------VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI 567 (954)
Q Consensus 499 A~~y~~lg~~eeAl~~~~kALe-----------l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ 567 (954)
-..++..++|++|.++....+. +|+-..++|+..+.++...|+..+..........+.|..
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L-------- 214 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM-------- 214 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHH--------
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH--------
Confidence 3345677889998888776651 234456777777777777777766655544444332210
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 568 EAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEA-LSISSC-SEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 568 ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ka-L~~~P~-~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
+..++.+ +..++. ...++..+-+.|+..+.|++|..+..++.
T Consensus 215 ----------------------------------l~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-- 258 (523)
T 4b4t_S 215 ----------------------------------MKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-- 258 (523)
T ss_dssp ----------------------------------HHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--
T ss_pred ----------------------------------HHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--
Confidence 1111111 122222 25577788889999999999999999885
Q ss_pred hhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 646 AEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 646 ~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
.|.... ......+ .++.+|.++...++|.+|.+++..|+...|.+.
T Consensus 259 fP~~~~--------sn~q~~r--Y~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 259 YPHTDV--------SSSLEAR--YFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp SCTTTS--------CHHHHHH--HHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred CCcccC--------CHHHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 232210 0111222 467789999999999999999999999877654
No 288
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.88 E-value=24 Score=38.00 Aligned_cols=28 Identities=14% Similarity=-0.151 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEH 641 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~ek 641 (954)
.++.++..+|..|...+++.+|..+|-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 5789999999999999999998887753
No 289
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.79 E-value=25 Score=38.15 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHH
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCE 640 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~e 640 (954)
.++.++..+|..|+..+++.+|...|-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 578899999999999999999888773
No 290
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.79 E-value=1.4 Score=51.02 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
.+..+|++..-...+..|..+|.+|+.+. |.....|+.||.+....|+.-+|+-+|-+++.....++.+..++..+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~----P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV----PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC----CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 34568999999999999999999999999 88899999999999999999999999999998877788888888877
Q ss_pred HHH
Q 002199 803 HEM 805 (954)
Q Consensus 803 y~~ 805 (954)
+..
T Consensus 230 f~~ 232 (497)
T 1ya0_A 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 291
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.69 E-value=2.3 Score=48.27 Aligned_cols=104 Identities=13% Similarity=-0.056 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
++..+|..|+..|+++.|++.|.++......... .+..+.....+++..++|..|..++.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-----------------kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-----------------KIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-----------------HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3567899999999999999999998775444332 23445556777888999999999999997
Q ss_pred hhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 749 STNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 749 ~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
.+.. .+......+....|.+++..++|.+|...|-.++.-.
T Consensus 196 ~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 196 SMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 6632 2223344566667888889999999999998887653
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.32 E-value=16 Score=42.08 Aligned_cols=112 Identities=8% Similarity=-0.025 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAE----------DFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi----------~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~ 514 (954)
.-.+..|+..+..+-..|+....+ ..+-.+++..--.. .....+.++..+-..|+..+.|++|...
T Consensus 178 ~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~----D~~~qa~l~nllLRnYL~~~~y~qA~~l 253 (523)
T 4b4t_S 178 LINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH----DNETKAMLINLILRDFLNNGEVDSASDF 253 (523)
T ss_dssp -------------------------CHHHHHHHHTHHHHHHHHCCSCS----SSCHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc----CcchhHHHHHHHHHHHHccCcHHHHHHH
Confidence 335566666666666666665532 23333333321111 1234578888999999999999999999
Q ss_pred HHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 515 CMMAATVDP-----NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 515 ~~kALel~P-----~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
..++.-... .....++.+|+++...++|.+|.+++..|+...|...
T Consensus 254 vsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 254 ISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 999853211 1256778899999999999999999999999887553
No 293
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.63 E-value=4.9 Score=51.57 Aligned_cols=169 Identities=11% Similarity=0.016 Sum_probs=99.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 619 ~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
...+...+...+.++-|.++.. ..|.+. +..+.+|.+|+..|++++|..+|+++..-..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~----~~~~~~-----------------~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~ 873 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIG----WLNSDP-----------------IAVYLKALIYLKSKEAVKAVRCFKTTSLVLY 873 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHH----HSCCCH-----------------HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCT
T ss_pred HHHHHHHHHHhhhHHHHHHHhh----hccCCc-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 3345556777777766654332 222221 2457899999999999999999998743221
Q ss_pred CCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh-hHHHHHHHHHHHHHhc
Q 002199 699 ISDRYGSEILESSMSLAGT----VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF-AAICFCNRAAALQALG 773 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~----~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~-~a~~~~~lA~~y~~lg 773 (954)
...... ..+.....+... ......|.....++.+.+.++.+++....||+.....++. ....|.++=..++.++
T Consensus 874 ~~~~l~-~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 874 SHTSQF-AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp TCCCSC-SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhh-hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC
Confidence 111101 101111111000 0011235556777888899999999999999876544333 3447888888899999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 774 ~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
+|++|...+...=. ...-...+..+-......+..+
T Consensus 953 ~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 953 KFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCChh
Confidence 99999877754321 1223445555555455544433
No 294
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=84.56 E-value=5.9 Score=49.41 Aligned_cols=99 Identities=4% Similarity=-0.104 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL--DENYTKAVSRRA 800 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--dP~~~~al~~lA 800 (954)
.+..+-..|.+.|+.++|...|............-+...|..+-..|.+.|++++|+..|++..+. .| +...|..+-
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI 207 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHH
Confidence 466678889999999999999987653310001336778999999999999999999999998765 35 577788888
Q ss_pred HHHHHhcC-HHHHHHHHHHHHHH
Q 002199 801 ALHEMIRD-YTQAASDLQRLVSI 822 (954)
Q Consensus 801 ~ly~~lg~-~eeAi~~~ekAL~l 822 (954)
.++.+.|+ .++|.+.|++..+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 88999998 47888888877654
No 295
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.29 E-value=73 Score=37.65 Aligned_cols=163 Identities=13% Similarity=-0.067 Sum_probs=96.3
Q ss_pred HHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 622 lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
.+...+...+.+.|...+........-+ .....+.+..++..+...+...++...+.+...... +.
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~-------------~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~ 285 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLN-------------EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-ST 285 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCC-------------HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCC-------------HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-Ch
Confidence 3444445557788888776654321111 011112333445444555535566666666543221 11
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIAD 781 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~ 781 (954)
. +..+ ..+ ..++.+++..|..+|...-... .......+.+|.++..+|+.++|...
T Consensus 286 ~------------------~~e~-~~r-~Alr~~d~~~a~~~~~~l~~~~----~~~~r~~YW~~ra~~~~g~~~~a~~~ 341 (618)
T 1qsa_A 286 S------------------LIER-RVR-MALGTGDRRGLNTWLARLPMEA----KEKDEWRYWQADLLLERGREAEAKEI 341 (618)
T ss_dssp H------------------HHHH-HHH-HHHHHTCHHHHHHHHHHSCTTG----GGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred H------------------HHHH-HHH-HHHHCCCHHHHHHHHHHccccc----cccHhHHHHHHHHHHHcCCHHHHHHH
Confidence 1 0111 123 3456799999999997653322 35677788899999999999999999
Q ss_pred HHHHHHhC-----------------------CCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 782 CSLAMALD-----------------------ENY-----TKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 782 ~ekAL~ld-----------------------P~~-----~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
|+++..-. +.. ....+.++..++.+|....|...+..++..
T Consensus 342 ~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 342 LHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 98876421 000 112355677788889988888888777654
No 296
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=79.27 E-value=14 Score=46.19 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGIN-----SVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~-----~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
..-..|..+-..|.+.|+.++|..+|.+..+ ..|+- ..|..+-..|.+.|+.++|++.|+...+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv-----------vTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL-----------DMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH-----------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH-----------hHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3445678888899999999999999977543 34553 7999999999999999999999999887
Q ss_pred c--CCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhh
Q 002199 521 V--DPNFLKVYMRAAKCHLVLGEI-ENAQHYYHKLLNS 555 (954)
Q Consensus 521 l--~P~~~~a~~~LA~iy~~lG~~-eeAl~~yekaL~l 555 (954)
. .| +...|..+-.++.+.|+. ++|.+.|++....
T Consensus 194 ~G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 194 AGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TTCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 5 46 456777788889999985 7888999888764
No 297
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.20 E-value=86 Score=33.97 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHh
Q 002199 790 ENYTKAVSRRAAL-HEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 790 P~~~~al~~lA~l-y~~lg~~eeAi~~~ekAL~l~ 823 (954)
|.....+..+|.+ |+.+++...|...+...++..
T Consensus 183 ~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 183 SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5566666777654 688999999999888888765
No 298
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.29 E-value=93 Score=33.37 Aligned_cols=122 Identities=9% Similarity=0.036 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhh
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTV-----RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFA 758 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~-----~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~ 758 (954)
++.+.-+.+++...|.........+..++.+.... .....+..+|..|...+++.+|..+|-.. + ..+
T Consensus 92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~----~~s 164 (312)
T 2wpv_A 92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---T----HDS 164 (312)
T ss_dssp HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---C----HHH
T ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---C----Ccc
Confidence 34455555555554544443444444444443322 12344555677777777777766666311 1 112
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhh
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA-LHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~-ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+..+..+-.-+.... -.-.|.....+..+|. .|.-+++...|...|....+..+
T Consensus 165 ~~~~a~~l~~w~~~~------------~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~ 219 (312)
T 2wpv_A 165 MIKYVDLLWDWLCQV------------DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFI 219 (312)
T ss_dssp HHHHHHHHHHHHHHT------------TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc------------CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 222221111111110 0012333455555554 46788999999999998887754
No 299
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=63.27 E-value=1.6e+02 Score=31.49 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcc----CCchhhHHH--------HHHHHHHHH-HhcC-----HHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNI----ESRPFAAIC--------FCNRAAALQ-ALGQ-----IADAIADCSLA 785 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~----~~~p~~a~~--------~~~lA~~y~-~lg~-----~eeAi~~~ekA 785 (954)
....|..++..|++++|+..|+.+|..-+ ++......+ .|.+|.... .... .++..+.++.+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence 34578999999999999999999988653 121112222 122221111 1111 12222333332
Q ss_pred H-----HhCCCCHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 786 M-----ALDENYTKAVSRRA-ALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 786 L-----~ldP~~~~al~~lA-~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
. .+.|.+...-++.| .+.++.++|..|...-+++|++.|.
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2 22344433333333 4568899999999999999999654
No 300
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=61.28 E-value=1.7e+02 Score=33.13 Aligned_cols=98 Identities=9% Similarity=0.015 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCccccc-CC---ch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CC--Cc
Q 002199 462 NNLTEAEDFYTQGINSVPLSETAGC-CI---KP--LVLCYSNRAATRISLGRMREALEDCMMAATV--------DP--NF 525 (954)
Q Consensus 462 g~y~eAi~~y~kAL~~~P~~~~~~~-~~---~~--la~~~~~lA~~y~~lg~~eeAl~~~~kALel--------~P--~~ 525 (954)
...++|.....++...+-.+-.... .. +. ...+..++-.+|+++++...|...++..-.. .| ..
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3567888888999888655432111 11 22 2334445668999999999888877544222 22 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-chhh
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNS-AAAV 559 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l-~P~~ 559 (954)
+..+|.+|++++..++|.+|.+.+..|+.. .|..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 567889999999999999999999999998 7754
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.68 E-value=61 Score=40.48 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=37.6
Q ss_pred HHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 622 lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
+...+...+.++-|.+ .+...|.+. +.-|.+|.+|+..|++++|..+|+++-.
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~-----------------~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDP-----------------IAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSH-----------------HHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 5566677787776543 333333332 2457899999999999999999998753
No 302
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=58.48 E-value=2.8e+02 Score=34.33 Aligned_cols=273 Identities=12% Similarity=-0.001 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhch-------h
Q 002199 489 KPLVLCYSNRAATRISLGRMREALEDCMMAAT---VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA-------A 558 (954)
Q Consensus 489 ~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe---l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P-------~ 558 (954)
+.....-...+.-.+..|+.++++..+.+.|- -...+.++-..+|.=+...|...+++.++...|.... .
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~ 450 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDV 450 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHH
T ss_pred chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcccccccccc
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHccCHHHHH
Q 002199 559 VCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEK--LLEMKADALYMLRKYEEAI 636 (954)
Q Consensus 559 ~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~--~~~~lA~~~~~lg~~eeAi 636 (954)
...+....+.++..++..++-+ +++.+...+..+..... +-+.+|.++.-.|+-+...
T Consensus 451 ----------------~~ir~gAaLGLGla~~GS~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~ 510 (963)
T 4ady_A 451 ----------------DVLLHGASLGIGLAAMGSANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIH 510 (963)
T ss_dssp ----------------HHHHHHHHHHHHHHSTTCCCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHH
Q ss_pred HHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 002199 637 QLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG 716 (954)
Q Consensus 637 ~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~ 716 (954)
.++..+.....+... ....+|..+...|+.+.+-..++.+.....
T Consensus 511 ~LL~~~~e~~~e~vr-----------------R~aalgLGll~~g~~e~~~~li~~L~~~~d------------------ 555 (963)
T 4ady_A 511 DMFTYSQETQHGNIT-----------------RGLAVGLALINYGRQELADDLITKMLASDE------------------ 555 (963)
T ss_dssp HHHHHHHHCSCHHHH-----------------HHHHHHHHHHTTTCGGGGHHHHHHHHHCSC------------------
T ss_pred HHHHHHhccCcHHHH-----------------HHHHHHHHhhhCCChHHHHHHHHHHHhCCC------------------
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
......+...+|..|...|+...--..+..+..-. .....-..-+|..+...|+.+.+.+.+.........+...-
T Consensus 556 p~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~----~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 556 SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS----NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC----cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHH
Q ss_pred HHHHHHHHHhcCH-HHHHHHHHHHH
Q 002199 797 SRRAALHEMIRDY-TQAASDLQRLV 820 (954)
Q Consensus 797 ~~lA~ly~~lg~~-eeAi~~~ekAL 820 (954)
..+|.-....|+- .+|+..+.++.
T Consensus 632 AalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 632 TAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHc
No 303
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=58.32 E-value=11 Score=32.19 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS 477 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~ 477 (954)
....+.+-.+..+|...-+.|+|.+|+.+|.++|+.
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344566778888999999999999999999887764
No 304
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.89 E-value=1.1e+02 Score=36.58 Aligned_cols=30 Identities=7% Similarity=0.215 Sum_probs=20.4
Q ss_pred HHHHHHHH--HHhcCHHHHHHHHHHHHHHhhhh
Q 002199 796 VSRRAALH--EMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 796 l~~lA~ly--~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+..+..++ +..|+|++|+..+++ +.+.|-+
T Consensus 539 Ll~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 539 LLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 34444444 788999999998887 5576644
No 305
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=57.37 E-value=1.7e+02 Score=29.86 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhc----cCCchhhHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 002199 738 TEAVEHYTVALSTN----IESRPFAAICFCNRAAALQA-LGQIADAIADCSLAMA 787 (954)
Q Consensus 738 eeAi~~y~kAL~l~----~~~~p~~a~~~~~lA~~y~~-lg~~eeAi~~~ekAL~ 787 (954)
+.|...|+.|+.+. |..+|....+..|.+..|+. +++.++|+...++|+.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666542 22335555555566655554 6888888887777664
No 306
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=57.21 E-value=1.9e+02 Score=30.14 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhc----cCCchhhHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 002199 738 TEAVEHYTVALSTN----IESRPFAAICFCNRAAALQA-LGQIADAIADCSLAMA 787 (954)
Q Consensus 738 eeAi~~y~kAL~l~----~~~~p~~a~~~~~lA~~y~~-lg~~eeAi~~~ekAL~ 787 (954)
+.|...|+.|+.+. |..+|....+..|.+..|+. +++.++|+...++|+.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45566666666542 22335555556666655554 6888888888887764
No 307
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=57.13 E-value=1.8e+02 Score=29.99 Aligned_cols=32 Identities=3% Similarity=0.010 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
-+..+|.+..+.++|++.+.+.+++...++..
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eL 37 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPL 37 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcC
Confidence 45566777788888888888888887776643
No 308
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=54.98 E-value=18 Score=30.88 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS 477 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~ 477 (954)
...+-.+..+|...-+.|+|.+|+.+|..+|+.
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456677888889999999999999999887763
No 309
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=54.89 E-value=2e+02 Score=29.85 Aligned_cols=33 Identities=9% Similarity=-0.004 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.-+..+|.+..+.++|++.+++.+++.+.++..
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eL 64 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVEL 64 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC
Confidence 455667777888888888888888888776643
No 310
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=52.24 E-value=3.3e+02 Score=32.25 Aligned_cols=76 Identities=9% Similarity=-0.082 Sum_probs=37.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 455 G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
-..++-.|+|+.|+.++-+. .+- -.+|+.+|..++ |-... -...+..+|. ...++++.
T Consensus 301 f~vLlLtgqFE~AI~~L~~~---~~v-----------dAVH~AIaL~~~--gLL~~----~~~lls~~~~--~~~lN~ar 358 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF---SEM-----------DAVHLAIGLASL--KLFKI----DSSTRLTKKP--KRDIRFAN 358 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT---CHH-----------HHHHHHHHHHHT--TC-----------------------CHHH
T ss_pred HHHHHHHhhHHHHHHHHHhc---Cch-----------hHHHHHHHHHHc--CCccC----CCcccccCCC--cccccHHH
Confidence 34566789999999987754 111 146666665553 33332 2333444443 22333443
Q ss_pred HH------HHcCCHHHHHHHHHHH
Q 002199 535 CH------LVLGEIENAQHYYHKL 552 (954)
Q Consensus 535 iy------~~lG~~eeAl~~yeka 552 (954)
+. +...+..+|+++|--+
T Consensus 359 LI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 359 ILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHH
Confidence 33 4568889999988655
No 311
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.68 E-value=1.9e+02 Score=31.02 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcc----CCchhhHHH--HHHHHHHHH-----HhcCH----HHHHHHHHHHH---
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNI----ESRPFAAIC--FCNRAAALQ-----ALGQI----ADAIADCSLAM--- 786 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~----~~~p~~a~~--~~~lA~~y~-----~lg~~----eeAi~~~ekAL--- 786 (954)
...|..++..|++++|+..|+.+|..-+ ++......+ +..++.-|. .+.+- ++..+.++.+.
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT 197 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFT 197 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhc
Confidence 3468889999999999999999987632 222222222 111111111 11000 11112222221
Q ss_pred --HhCCCCHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 787 --ALDENYTKAVSRRA-ALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 787 --~ldP~~~~al~~lA-~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.+.|.+...-++.| .+.++.++|..|...-+++|++.|.
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 22343333222333 4568899999999999999999664
No 312
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=51.10 E-value=24 Score=30.09 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS 477 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~ 477 (954)
......+..+..+|...-..|+|++|+.+|..+++.
T Consensus 7 ~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 7 GDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345567778888898888999999999999887763
No 313
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=51.02 E-value=2.6e+02 Score=29.96 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC-----HHHH
Q 002199 667 LWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA-FKSGR-----YTEA 740 (954)
Q Consensus 667 l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~-~~~g~-----~eeA 740 (954)
+...+..|.-+...|++++|+..|+.++...|-..-........+..+....+ .| -+|... ..... .++.
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icr---eY-ilal~iEl~Rr~l~~~~~~~~ 177 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICR---EY-IVGLSMETERKKLPKETLEQQ 177 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHH---HH-HHHHHHHHHHTTSCCCSHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHhcccCCchhH
Confidence 33455678889999999999999999998765332111111122211111111 11 122111 11111 1232
Q ss_pred HHHHHHHHhh-ccCCchhhHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 741 VEHYTVALST-NIESRPFAAI-CFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 741 i~~y~kAL~l-~~~~~p~~a~-~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
...++-|.-. .....|.+.. ++..--...++.++|..|..+.++.|++.|.
T Consensus 178 kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 178 KRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2222222111 1122243333 3333335667889999999999999999875
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.08 E-value=1.1e+02 Score=38.30 Aligned_cols=52 Identities=8% Similarity=-0.136 Sum_probs=40.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 498 RAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553 (954)
Q Consensus 498 lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL 553 (954)
+...++..+.++-|. ..+..-|.++..-|.+|++|+..|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444556677776543 3556678888888999999999999999999999874
No 315
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=48.67 E-value=2.4e+02 Score=28.87 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.-+..+|.+..+.++|++.+.+.+++.+.++..
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eL 41 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEEL 41 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC
Confidence 455667788888888888888888888776643
No 316
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=46.98 E-value=29 Score=31.63 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS 477 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~ 477 (954)
...+.+..+..+|...-..|+|++|+.+|..||++
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567777888888888999999999999877653
No 317
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=46.38 E-value=40 Score=29.25 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGIN 476 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~ 476 (954)
.....+..+-.++..+.+.|+|++||++..+|..
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445677888999999999999999999887654
No 318
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.88 E-value=26 Score=29.10 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSE 482 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~ 482 (954)
-..+|..+...|++++|+.+|-+||..+|.-.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 36789999999999999999999999999853
No 319
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=42.12 E-value=36 Score=29.18 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS 477 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~ 477 (954)
..+..+...|..+-..|+|++|+.+|..+|+.
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666788888889999999999999887753
No 320
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=41.61 E-value=96 Score=33.72 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=38.3
Q ss_pred HHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 635 AIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 635 Ai~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
++.+|.+++......+.. ..++.|..+|..|++.+++.+|+..+-.+-.....
T Consensus 276 ~l~L~~~AI~sa~~yY~n------------~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 276 AEELFKEAITVAKREYSD------------HHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHHHHHSTT------------CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc------------CCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 677777777766554321 11346778899999999999999999988765433
No 321
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=41.57 E-value=3.2e+02 Score=28.33 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhc---cCCchhhHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 002199 738 TEAVEHYTVALSTN---IESRPFAAICFCNRAAALQA-LGQIADAIADCSLAMA 787 (954)
Q Consensus 738 eeAi~~y~kAL~l~---~~~~p~~a~~~~~lA~~y~~-lg~~eeAi~~~ekAL~ 787 (954)
+.|...|+.|+.+. |..+|....+..|.+..|+. +++.++|+...++|+.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666777766553 12234444555555555554 6888888888777764
No 322
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=41.19 E-value=3.9e+02 Score=29.17 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALS 749 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~ 749 (954)
-.+.+++..|..+...+++.+||..++.|..
T Consensus 251 ~~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~ 281 (376)
T 3r9m_A 251 YTAYAYCYHGETLLASDKCGEAIRSLQEAEK 281 (376)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3445555666666667777777777766654
No 323
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=40.37 E-value=38 Score=29.42 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGIN 476 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~ 476 (954)
...+.+..+..+|...-..|+|++|+.+|..+|+
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445677788888888899999999999887665
No 324
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=39.74 E-value=1.2e+02 Score=26.08 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=8.6
Q ss_pred HcCCHHHHHHHHHHHHh
Q 002199 538 VLGEIENAQHYYHKLLN 554 (954)
Q Consensus 538 ~lG~~eeAl~~yekaL~ 554 (954)
..|+|++|+.+|..+++
T Consensus 27 ~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 27 AESRYQQALVCYQEGID 43 (93)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 34555555555555444
No 325
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.47 E-value=1e+02 Score=26.14 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.|.-....|+|++|+.+|..+++.+-..
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3344466789999999998888886443
No 326
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=38.70 E-value=75 Score=31.74 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHH
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMR 509 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~e 509 (954)
.+.+.-++.+|..++.+++|.+|.+.+.+|+...|... ....-.++..+--+.+-+|++.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~-----~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS-----QKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH-----HHHHHHHHHHHHHHHHHcCCCC
Confidence 45677889999999999999999999999999999764 2233445555555666677753
No 327
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=38.25 E-value=1.2e+02 Score=25.64 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=19.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
|.-.-..|+|++|+.+|..+++.+-..
T Consensus 18 Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 334456789999999999888886443
No 328
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=37.69 E-value=3.7e+02 Score=27.96 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhc------cCCchhhHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHh
Q 002199 739 EAVEHYTVALSTN------IESRPFAAICFCNRAAALQ-ALGQIADAIADCSLAMAL 788 (954)
Q Consensus 739 eAi~~y~kAL~l~------~~~~p~~a~~~~~lA~~y~-~lg~~eeAi~~~ekAL~l 788 (954)
.|...|+.|+.+. |..+|....+..|.+..|+ -+++.++|+...++|+.-
T Consensus 170 ~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 170 QAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445555554432 2223555555666666655 578999999988888765
No 329
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.73 E-value=42 Score=29.09 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
++..+..+|..++..|+|++||++.++|.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 46777788888888888888888877764
No 330
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=36.09 E-value=1.1e+02 Score=26.20 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPL 480 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~ 480 (954)
...+..+...|..+|+.++|.+|..+|+++..+..+
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten 85 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNLSDN 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccC
Confidence 367888999999999999999999999999977554
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.99 E-value=1.6e+02 Score=28.20 Aligned_cols=62 Identities=10% Similarity=-0.054 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHH-H--HHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 763 CNRAAALQALGQIADAIADCSLAMALDENY------TKAVSR-R--AALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 763 ~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~------~~al~~-l--A~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+..|..++..|+|-+|-+.++.+....+.. ...+++ + |..+...|+...|...+.+++..+.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344566667788888888888877665443 344444 4 3455677999999999999998753
No 332
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=30.90 E-value=3.5e+02 Score=25.57 Aligned_cols=67 Identities=24% Similarity=0.155 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 579 VTEYINCSGKLL-EQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 579 ~~~~l~~a~~ll-~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
...+..+|..++ .+|.-+. --..+...+...+-++.++..+|.+|.++|+..+|-+++.+|-+..-.
T Consensus 90 ~se~vd~ALd~lv~~~KkDq---Ldki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDK---LEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHH---HHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhH---HHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 455666666555 5555552 222333434556667999999999999999999999999998776543
No 333
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.70 E-value=2.4e+02 Score=27.01 Aligned_cols=64 Identities=8% Similarity=0.022 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCC--chh--hHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIES--RPF--AAICF-CNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~--~p~--~a~~~-~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
+..|..++..|+|=+|-+.++.+....+.. ... ...+. ...|..+...|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346788899999999999999998876432 122 23333 34455666789999999999999874
No 334
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=30.03 E-value=42 Score=29.39 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~ 481 (954)
-..+|..++..|+++.|+.+|-+||..+|.-
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 3678999999999999999999999999874
No 335
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=29.90 E-value=81 Score=31.50 Aligned_cols=35 Identities=11% Similarity=-0.154 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
.+..++.+|.+++..++|.+|.+.+..|+...|..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 56788899999999999999999999999988765
No 336
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.61 E-value=1.7e+02 Score=33.14 Aligned_cols=97 Identities=8% Similarity=0.050 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 670 WRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS 749 (954)
Q Consensus 670 ~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~ 749 (954)
...+-.+|+++++...+...++..-......+.. .....+.+.-++.+|..++.+++|.+|.+++..|+.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~----------~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFN----------EYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGG----------GSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChh----------hCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3445689999999999998887654432210110 112334556677899999999999999999999999
Q ss_pred h-ccCC------chhhHHHHHHHHHHHHHhcCHH
Q 002199 750 T-NIES------RPFAAICFCNRAAALQALGQIA 776 (954)
Q Consensus 750 l-~~~~------~p~~a~~~~~lA~~y~~lg~~e 776 (954)
. .|.. ......++..+--+-+-+|++.
T Consensus 249 ~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P 282 (455)
T 3t5v_B 249 SLLNLPLTNQAITRNGTRILNYMIPTGLILGKMV 282 (455)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred hcCCccccchhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 8 7543 1223334444555555667653
No 337
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.60 E-value=1.3e+02 Score=25.71 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 798 RRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 798 ~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
..|.-+...|+|++|+.+|..+++++-
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334444667888888888888887753
No 338
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.68 E-value=1.7e+02 Score=24.62 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=17.2
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 802 LHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 802 ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
-....|+|++|+..|..+++++-.
T Consensus 22 ~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 22 DLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345568888888888888877543
No 339
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=26.04 E-value=2.6e+02 Score=31.11 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-CCchhh
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI-ESRPFA 758 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-~~~p~~ 758 (954)
+.+|.-|+-.+-.+.++.|.+... .++..|.+|+.... ......
T Consensus 258 l~~YPmALgnLgDLEei~pt~grp-----------------------------------~~~~Lf~~AI~~ar~~Y~~~h 302 (489)
T 4gq4_A 258 LERYPMALGNLADLEELEPTPGRP-----------------------------------DPLTLYHKGIASAKTYYRDEH 302 (489)
T ss_dssp TTTCHHHHHHHHHHHHHSCCTTSC-----------------------------------CHHHHHHHHHHHHHHHSTTCC
T ss_pred hhhcchhhhcccCHhhcCCCCCCC-----------------------------------CHHHHHHHHHHHHHHhcccCc
Confidence 556888888888888888766441 23345555554321 001234
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
...|..+|-.+++.++|.+|++.+..+-.
T Consensus 303 vYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 303 IYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 55677778888888999999988887754
No 340
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=25.62 E-value=94 Score=28.18 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=10.5
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 002199 729 NEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 729 ~~~~~~g~~eeAi~~y~kAL 748 (954)
...-..++|++|+.+|..|+
T Consensus 26 ve~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 26 AQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 33344556666665555544
No 341
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.32 E-value=7.3e+02 Score=27.54 Aligned_cols=170 Identities=10% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHhchhhhhhhhhh
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYE--EAIQLCEHTLPVAEKNFASV 653 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~e--eAi~~~ekaL~l~p~~~~~~ 653 (954)
.+...-.-.+.+.++..|... ..+.++.+||++-...--.. .++.+|.+++......+.
T Consensus 254 ~el~~LQq~LLWlLyd~GhL~-----------------rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~-- 314 (550)
T 3u84_A 254 LELLQLQQKLLWLLYDLGHLE-----------------RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYR-- 314 (550)
T ss_dssp HHHHHHHHHHHHHHHHTTTTT-----------------TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHST--
T ss_pred HHHHHHHHHHHHHHHhccchh-----------------hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhc--
Q ss_pred hhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 654 LADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK 733 (954)
Q Consensus 654 ~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~ 733 (954)
-..++.|..+|-.|++.+++.+|+..+-.+-........ ..+..+-...+.....++.-..........
T Consensus 315 ----------n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY-~reDeEIYKEf~eIAneliP~~~k~~a~~~ 383 (550)
T 3u84_A 315 ----------DEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNY-CREDEEIYKEFFEVANDVIPNLLKEAASLL 383 (550)
T ss_dssp ----------TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-CGGGHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ----------cCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCC-CcchHHHHHHHHHHHHHhhhHHHHHhhhhc
Q ss_pred cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHH
Q 002199 734 SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD 777 (954)
Q Consensus 734 ~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ee 777 (954)
..-..++-+.=+-.... .+.-.++.++.+|-..|-..-+|+|
T Consensus 384 ~~G~~~~~~~~~~~~~~--~siL~Dp~cfA~LLrFYDgIC~WEE 425 (550)
T 3u84_A 384 EAGEERPGEQSQGTQSQ--GSALQDPECFAHLLRFYDGICKWEE 425 (550)
T ss_dssp HTC-----------------CGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccchhH--HHHhcChHHHHHHHHHhhcceeccc
No 342
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=25.16 E-value=4.7e+02 Score=28.34 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhh
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAE 647 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p 647 (954)
..+++..|......+++-+||..++.+.+.-.
T Consensus 252 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~ 283 (363)
T 3rau_A 252 AVAHLHMGKQAEEQQKFGERVAYFQSALDKLN 283 (363)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHH
Confidence 34567778888888999999999988877643
No 343
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.24 E-value=53 Score=27.63 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINS 477 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~ 477 (954)
...+|+.|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 356789999999999999999998874
No 344
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=23.83 E-value=0.013 Score=66.38 Aligned_cols=212 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 480 LSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 480 ~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+.+ .+|..+|.+++..++..+||+.|-+| +++..|...-.+..+.|+|++=+.++..+-+.-.+.
T Consensus 52 n~p----------~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~ 116 (624)
T 3lvg_A 52 NEP----------AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 116 (624)
T ss_dssp CCC----------CCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST
T ss_pred CCc----------cHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Q ss_pred hhhHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002199 560 CLDRRITIEAADGLQKAQK------------VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALY 627 (954)
Q Consensus 560 ~~~~~~~~ea~~~l~~~~~------------~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~ 627 (954)
..+. +..-.+.+..+ ....-..|..++..+.|+ +-++-=.+..-+..||.++.
T Consensus 117 ~IDt----eLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYe-----------AAKilys~isN~akLAstLV 181 (624)
T 3lvg_A 117 YVET----ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD-----------AAKLLYNNVSNFGRLASTLV 181 (624)
T ss_dssp TTTH----HHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCST-----------TSSTTGGGSCCCTTTSSSSS
T ss_pred ccHH----HHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHH-----------HHHHHHHhCccHHHHHHHHH
Q ss_pred HccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHH
Q 002199 628 MLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEI 707 (954)
Q Consensus 628 ~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~ 707 (954)
.+|+|..|++..++|-... .|-....+....+++.-|-.+--..+-....-+.
T Consensus 182 ~L~~yq~AVdaArKAns~k----------------------tWKeV~~ACvd~~EfrLAqicGLniIvhadeL~e----- 234 (624)
T 3lvg_A 182 HLGEYQAAVDGARKANSTR----------------------TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEE----- 234 (624)
T ss_dssp SCSGGGSSTTTTTTCCSSC----------------------SHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSG-----
T ss_pred HHHHHHHHHHHHHhcCChh----------------------HHHHHHHHHhCchHHHHHHHhcchhcccHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH
Q 002199 708 LESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 708 l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~ 771 (954)
+-..|...|.|++-|..++.++.+. .-....+..||.+|.+
T Consensus 235 -------------------lv~~YE~~G~f~ELIsLlEaglglE----rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 235 -------------------LINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSK 275 (624)
T ss_dssp -------------------GGSSSSTTCCCTTSTTTHHHHTTST----TCCHHHHHHHHHHHHS
T ss_pred -------------------HHHHHHhCCCHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHh
No 345
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.47 E-value=95 Score=36.97 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIE 543 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~e 543 (954)
.....+|...+..|+|.-|.+.+..++..+|++..+...+|.+|.++|.-.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 456667788888889999999999998889998888888888888776433
No 346
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.93 E-value=5.1e+02 Score=24.81 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP 790 (954)
.+.+.|......... ...+..|...|..+...|++.+|...|...|....
T Consensus 78 ~p~~if~~L~~~~IG--~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIG--VSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp CHHHHHHHHHHTTSS--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCcc--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 366667666655432 46778888888899999999999999999988763
No 347
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.70 E-value=99 Score=36.81 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR 507 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~ 507 (954)
++....+|..++..|+|.-|.++...++..+|++. .+...+|.+|.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~----------~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----------AARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----------HHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999997 788888888877664
No 348
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.11 E-value=2.7e+02 Score=28.17 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMA--LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~--ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
++....+|...+.. .+++...|.-... +.-..+..|...|..+...|++.+|...|+..++.
T Consensus 116 D~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 116 DVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 35566666655542 2466666766654 34667888899999999999999999999999987
No 349
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.92 E-value=4.7e+02 Score=28.52 Aligned_cols=86 Identities=12% Similarity=-0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 445 QETCEMWRLRGNQAYKNN---NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g---~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
.+.+.....+=..+|..| +|.-|+-.+-..-++.|.... ..++..|.+|+..
T Consensus 232 ~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr-------------------------~~~l~L~~~AI~s 286 (472)
T 3re2_A 232 IQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGR-------------------------PPAEELFKEAITV 286 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTS-------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCC-------------------------CCHHHHHHHHHHH
Confidence 344444445556666665 577788888777777777531 1144555555543
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 522 -----DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 522 -----~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
.......|..+|-++++.+++.+|+..+-.+-..
T Consensus 287 a~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 287 AKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 2345667888899999999999999999887664
No 350
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.52 E-value=1.8e+02 Score=32.63 Aligned_cols=50 Identities=14% Similarity=0.016 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 506 GRMREALEDCMMAA-TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 506 g~~eeAl~~~~kAL-el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
.++++|+..+...- .-.++...++..+|++|+.+++|++|+.+.++++..
T Consensus 169 ~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 169 ETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 34455555443211 123556778889999999999999999999999875
No 351
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.37 E-value=1.8e+02 Score=32.86 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
.++...++..+|++|+.+++|++|+.+.++++..
T Consensus 187 r~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 187 KPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3556778888999999999999999999998875
No 352
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.25 E-value=3.7e+02 Score=25.76 Aligned_cols=62 Identities=10% Similarity=0.006 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMA--LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~--ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
++....+|...+... .++...|..... +.-..+..|...|..+...|++.+|.+.|+..++.
T Consensus 62 D~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 62 DPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 366666666666442 346666666554 44667888999999999999999999999999987
No 353
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=21.01 E-value=3.8e+02 Score=22.99 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHH-HHHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF-CNRAAALQ 770 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~-~~lA~~y~ 770 (954)
..+..+...|.-+++.++|.+|+..|+++..+.. + |..-.++ +.++.|-.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te-n-~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD-N-EEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc-C-HHHHHHHHHHHHHHHH
Confidence 3445556678889999999999999999986641 2 3333333 55565543
No 354
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=20.72 E-value=7.1e+02 Score=25.71 Aligned_cols=44 Identities=14% Similarity=-0.011 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNF-LKVYMRAAKCH 536 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-~~a~~~LA~iy 536 (954)
.-+..+|.+..+.++|++.++..++++++++.. ..=...|..+|
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAY 76 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 76 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 456677888899999999999999999988754 34444555554
No 355
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.58 E-value=7.9e+02 Score=26.21 Aligned_cols=117 Identities=9% Similarity=-0.021 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---cCCHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA---FK---SGRYTEAVE 742 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~---~~---~g~~eeAi~ 742 (954)
..+..|.-+...|++++|+..|+.++...|-..-........+..+....++ | -+|... .+ ..+....++
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrE---Y-ilal~iEl~Rr~l~~~~~kR~lE 191 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETARE---Y-ILGLSIELERRSLKEGNTVRMLE 191 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHH---H-HHHHHHHHHHHTCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHhcCcccHHHHHH
Confidence 4456788899999999999999999886543221111111111111111111 1 111111 11 122222222
Q ss_pred HHHHHHhhccCCchhhH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 743 HYTVALSTNIESRPFAA-ICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 743 ~y~kAL~l~~~~~p~~a-~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
+--- +.. ....|... .++..--...++.++|..|....++.|++.|.
T Consensus 192 LAAY-FT~-c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 192 LAAY-FTK-AKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHH-GGG-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHH-hcc-CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 1100 111 11223333 33333345667899999999999999999986
No 356
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.51 E-value=8.4e+02 Score=26.48 Aligned_cols=117 Identities=16% Similarity=0.055 Sum_probs=67.4
Q ss_pred HHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 622 lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
+..+.....+.++|++.++++...-..................+.++....++..|+..++.+.|..+++++-.......
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 34456677889999999987754322111000000001111123344667789999999999999999998865311100
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
.... .-....+...+..+...++|..+...+-.++..
T Consensus 162 ~~~~------------~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 162 SIPL------------RITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp CSSS------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccH------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 0000 011233445677778889998887777666653
Done!