BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002200
(954 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F1N|A Chain A, Structure Of Cdtb, The Biologically Active Subunit Of
Cytolethal Distending Toxin
Length = 262
Score = 37.0 bits (84), Expect = 0.049, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 133 MATRQLIWNKNYNVKPREIS---KAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEG 189
+ R+LIWN + N +P+++ A D L + +SN E+ +LS V +GG
Sbjct: 75 IPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEV--FVLSPVRQGGRP 132
Query: 190 DVGQRIRDEIL----VIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFD 244
+G RI ++ I NN ++EE + ++ P + QAL I DF+
Sbjct: 133 LLGIRIGNDAFFTAHAIAMRNNDAPALVEEVYNFFRDSRDP----VHQALNWMILGDFN 187
>pdb|2OLS|A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase
From Neisseria Meningitidis
Length = 794
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 756 AIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSE 813
A+ V+AS +N+RA +H+ + ++ VQ ++ +D + V+ T + SG
Sbjct: 157 AMHHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQV 216
Query: 814 IYAEVVKGLGETLV-GAYPGRALSFVCKKNDLKY--PRVLGYPSKPIGLFIRRSIIFRSD 870
++ GLGE +V GA F K LK P +L K +G + I
Sbjct: 217 VFVTSSYGLGENVVQGAV--NPDEFYVFKPTLKAGKPAIL---RKTMGSKHIKMIFTDKA 271
Query: 871 SNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELF 930
G+ + VP ++ + + +D IT+ +A IE+ +
Sbjct: 272 EAGKSVTNV-------DVPEEDRNRFSI---TDEEITE----------LAHYALTIEKHY 311
Query: 931 GSAQDIE----GVVRDGKIYVVQTRPQ 953
G DIE G+ DGK+Y++Q RP+
Sbjct: 312 GRPMDIEWGRDGL--DGKLYILQARPE 336
>pdb|2FNA|A Chain A, Crystal Structure Of An Archaeal Aaa+ Atpase (Sso1545)
From Sulfolobus Solfataricus P2 At 2.00 A Resolution
pdb|2FNA|B Chain B, Crystal Structure Of An Archaeal Aaa+ Atpase (Sso1545)
From Sulfolobus Solfataricus P2 At 2.00 A Resolution
Length = 357
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 295 KAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEA 354
K + L + IT LG R G+ ++ + IN + NLP + +L +F E+RN +
Sbjct: 20 KEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINEL-NLPYIYLDLRKF-----EERNYIS 73
Query: 355 LLEGLLEARQEIRPLLFKHNDRLKDL 380
+ LLE ++EI L+ + LK L
Sbjct: 74 YKDFLLELQKEINKLVKRLPSLLKAL 99
>pdb|3RFZ|B Chain B, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
pdb|3RFZ|E Chain E, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
Length = 843
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 629 PTSADIAYSVVEGSELQDSSSANLKEEDG-------PSSSVALVKKQFAGRYAITSDEF- 680
P + + Y+ +LQ +KE DG P SSV L++++ RY+IT+ E+
Sbjct: 284 PFTINDIYAAGNSGDLQ----VTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYR 339
Query: 681 TGELVGAKSR--NIAYLKGKVPSW-IGIPTSVALPFGVFEKVLSDNINQVQELKTEMKSS 737
+G K R L G W I T +A + F + N+ + L +M +
Sbjct: 340 SGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQA 399
Query: 738 GMPWPGDE 745
P D
Sbjct: 400 NSTLPDDS 407
>pdb|3R2H|A Chain A, 1.7 A Resolution Structure Of As-Isolated Ftna From
Pseudomonas Aeruginosa (Ph 10.5)
pdb|3R2K|A Chain A, 1.55a Resolution Structure Of As-Isolated Ftna From
Pseudomonas Aeruginosa (Ph 7.5)
pdb|3R2L|A Chain A, 1.85a Resolution Structure Of Iron Soaked Ftna From
Pseudomonas Aeruginosa (Ph 7.5)
pdb|3R2M|A Chain A, 1.8a Resolution Structure Of Doubly Soaked Ftna From
Pseudomonas Aeruginosa (Ph 7.5)
pdb|3R2O|A Chain A, 1.95 A Resolution Structure Of As-Isolated Ftna From
Pseudomonas Aeruginosa (Ph 6.0)
pdb|3R2R|A Chain A, 1.65a Resolution Structure Of Iron Soaked Ftna From
Pseudomonas Aeruginosa (Ph 6.0)
pdb|3R2S|A Chain A, 2.1a Resolution Structure Of Doubly Soaked Ftna From
Pseudomonas Aeruginosa (Ph 6.0)
Length = 154
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 335 GFPELLQFVSEHVED--RNVEALLEG--LLEARQEIRPLLFKHNDRLKDLLFLDIALESS 390
GF +L + ++ +E+ ++ +ALL LLE +RP + ++L D+ LE
Sbjct: 36 GFSKLYERLNHEMEEETQHADALLRRILLLEGTPRMRPDDIHPGTTVPEMLEADLKLERH 95
Query: 391 VRTAIEKG 398
VR A+ KG
Sbjct: 96 VRAALAKG 103
>pdb|3OHN|A Chain A, Crystal Structure Of The Fimd Translocation Domain
pdb|3OHN|B Chain B, Crystal Structure Of The Fimd Translocation Domain
Length = 558
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 629 PTSADIAYSVVEGSELQDSSSANLKEEDG-------PSSSVALVKKQFAGRYAITSDEF- 680
P + + Y+ +LQ +KE DG P SSV L++++ RY+IT+ E+
Sbjct: 161 PFTINDIYAAGNSGDLQ----VTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYR 216
Query: 681 TGELVGAKSR--NIAYLKGKVPSW-IGIPTSVALPFGVFEKVLSDNINQVQELKTEMKSS 737
+G K R L G W I T +A + F + N+ + L +M +
Sbjct: 217 SGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQA 276
Query: 738 GMPWPGDE 745
P D
Sbjct: 277 NSTLPDDS 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,173,907
Number of Sequences: 62578
Number of extensions: 1197415
Number of successful extensions: 3039
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3038
Number of HSP's gapped (non-prelim): 10
length of query: 954
length of database: 14,973,337
effective HSP length: 108
effective length of query: 846
effective length of database: 8,214,913
effective search space: 6949816398
effective search space used: 6949816398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)