Query 002200
Match_columns 954
No_of_seqs 208 out of 1457
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 18:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06464 phosphoenolpyruvate s 100.0 4.6E-43 1E-47 425.1 23.7 256 671-954 4-334 (795)
2 PRK06241 phosphoenolpyruvate s 100.0 8.5E-43 1.8E-47 427.8 22.9 245 672-954 3-312 (871)
3 TIGR01418 PEP_synth phosphoeno 100.0 5.3E-42 1.1E-46 416.0 23.3 254 673-953 1-331 (782)
4 PF01326 PPDK_N: Pyruvate phos 100.0 2.4E-43 5.2E-48 390.1 9.1 237 682-954 3-303 (327)
5 PRK05878 pyruvate phosphate di 100.0 4.6E-35 9.9E-40 340.6 20.4 212 669-953 4-297 (530)
6 TIGR01828 pyru_phos_dikin pyru 100.0 1.7E-30 3.7E-35 316.7 20.2 134 749-953 198-337 (856)
7 COG0574 PpsA Phosphoenolpyruva 100.0 1.9E-31 4.1E-36 323.0 11.2 237 681-953 15-320 (740)
8 PRK09279 pyruvate phosphate di 100.0 2.8E-30 6.1E-35 314.1 20.4 134 749-953 204-343 (879)
9 PRK05849 hypothetical protein; 99.9 1.7E-26 3.7E-31 278.5 18.0 186 682-954 5-216 (783)
10 PLN02784 alpha-amylase 98.8 2.1E-09 4.6E-14 130.7 5.6 65 1-67 142-209 (894)
11 PLN02784 alpha-amylase 98.8 5.1E-09 1.1E-13 127.5 5.8 66 1-71 331-397 (894)
12 PRK05849 hypothetical protein; 96.6 0.023 5E-07 70.9 14.2 175 453-634 571-780 (783)
13 PRK08296 hypothetical protein; 96.4 0.0046 1E-07 74.9 6.0 95 535-636 505-601 (603)
14 PF00391 PEP-utilizers: PEP-ut 96.1 0.0059 1.3E-07 55.2 3.7 67 559-630 9-78 (80)
15 PRK06241 phosphoenolpyruvate s 95.8 0.013 2.8E-07 74.3 6.6 93 535-636 773-868 (871)
16 PRK05878 pyruvate phosphate di 94.4 0.047 1E-06 65.6 5.3 95 533-634 354-451 (530)
17 PRK05865 hypothetical protein; 94.4 0.073 1.6E-06 67.3 7.0 95 535-637 741-837 (854)
18 TIGR01418 PEP_synth phosphoeno 94.3 0.05 1.1E-06 68.3 5.5 92 533-631 358-451 (782)
19 PRK06354 pyruvate kinase; Prov 94.2 0.048 1E-06 66.3 4.9 92 535-633 488-581 (590)
20 PRK09279 pyruvate phosphate di 94.2 0.045 9.8E-07 69.2 4.6 102 534-638 399-511 (879)
21 PRK06464 phosphoenolpyruvate s 93.9 0.052 1.1E-06 68.2 4.3 97 533-636 360-461 (795)
22 TIGR01828 pyru_phos_dikin pyru 93.4 0.076 1.6E-06 67.2 4.7 101 534-637 393-504 (856)
23 PRK11377 dihydroxyacetone kina 92.9 0.17 3.7E-06 60.2 6.4 73 559-635 395-470 (473)
24 COG3848 Phosphohistidine swive 90.5 0.37 7.9E-06 46.1 4.4 96 533-636 6-104 (111)
25 PRK11177 phosphoenolpyruvate-p 89.2 0.41 8.9E-06 58.4 4.7 76 559-638 153-231 (575)
26 TIGR01417 PTS_I_fam phosphoeno 87.7 0.57 1.2E-05 57.0 4.6 75 559-638 152-230 (565)
27 PRK03955 hypothetical protein; 86.8 2.8 6.1E-05 42.0 8.0 96 533-636 6-128 (131)
28 COG1080 PtsA Phosphoenolpyruva 85.9 1.2 2.6E-05 53.8 5.9 76 559-638 154-232 (574)
29 PRK11061 fused phosphoenolpyru 85.4 1.2 2.7E-05 55.9 5.9 74 559-638 320-397 (748)
30 COG3605 PtsP Signal transducti 83.6 2.3 4.9E-05 51.5 6.6 79 555-638 323-405 (756)
31 PF03423 CBM_25: Carbohydrate 82.7 1.9 4.1E-05 39.9 4.5 35 30-65 51-86 (87)
32 COG0574 PpsA Phosphoenolpyruva 65.6 3 6.6E-05 52.5 1.6 126 493-627 305-432 (740)
33 PF02786 CPSase_L_D2: Carbamoy 50.6 30 0.00066 37.1 5.8 45 903-952 130-178 (211)
34 COG5424 Pyrroloquinoline quino 42.4 31 0.00066 38.0 4.2 25 244-269 92-117 (242)
35 PF04190 DUF410: Protein of un 38.8 1E+02 0.0023 34.0 7.8 87 156-246 53-158 (260)
36 KOG3021 Predicted kinase [Gene 34.2 37 0.0008 37.4 3.2 43 151-195 95-137 (313)
37 KOG2122 Beta-catenin-binding p 25.1 5E+02 0.011 35.9 11.3 138 375-522 373-522 (2195)
38 PF14475 Mso1_Sec1_bdg: Sec1-b 24.3 65 0.0014 26.4 2.3 20 223-242 14-33 (41)
39 PLN02316 synthase/transferase 20.5 1.3E+02 0.0028 39.9 5.1 37 31-68 203-240 (1036)
No 1
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=4.6e-43 Score=425.12 Aligned_cols=256 Identities=24% Similarity=0.380 Sum_probs=202.3
Q ss_pred CceeeeCCCCC---CCccCHHHHHHHHHHccCC-CcccCCCceecChhhhHHHHhhhh-----H------------H---
Q 002200 671 GRYAITSDEFT---GELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNI-----N------------Q--- 726 (954)
Q Consensus 671 ~~~vl~l~e~~---~~~VG~KAanLg~L~~~~p-~g~~VP~GfvIPfg~fe~~L~~~~-----~------------~--- 726 (954)
.+++++|.++. ...|||||+||++|++.++ .||+||+|||||+++|++||+.+. . .
T Consensus 4 ~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~~l~~~i~~~l~~~~~~d~~~l~~ 83 (795)
T PRK06464 4 MKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQTGLNEKIYELLDGLDVDDVDALAK 83 (795)
T ss_pred CceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhCChHHHHHHHHhhcCcCCHHHHHH
Confidence 45778888764 5789999999999998666 589999999999999999987531 0 0
Q ss_pred ------------------HHHHHH--------------HHHhcCCCCCCCC------Cc-------ccHHHHHHHHHHHH
Q 002200 727 ------------------VQELKT--------------EMKSSGMPWPGDE------GE-------QRWEQAWMAIKKVW 761 (954)
Q Consensus 727 ------------------lqeL~~--------------AvRSS~~~~aeD~------g~-------~~~e~l~~AIk~VW 761 (954)
.++|.+ +||||+ ..||. |+ .+.+++++|||+||
T Consensus 84 ~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa--~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~v~ 161 (795)
T PRK06464 84 AGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSA--TAEDLPDASFAGQQETFLNVRGIDDVLEAVKECF 161 (795)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCC--cccCCCCCCCCCccceecCCCCHHHHHHHHHHHH
Confidence 111111 245666 45663 32 24799999999999
Q ss_pred HhcCChhhHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEecCCCCCCCCceeeeecccccccccccccCcceeEEE
Q 002200 762 ASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVC 839 (954)
Q Consensus 762 ASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVl~T~nP~tgd~~~i~IEa~~GLGEtLVsG~~Gtpd~f~v 839 (954)
||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++.++++||+++||||+||+|.. +||+|.+
T Consensus 162 aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~~v 240 (795)
T PRK06464 162 ASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEFYV 240 (795)
T ss_pred HccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEEEE
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999986 8999999
Q ss_pred eccCCC--CccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCcccCcccchHHHHH
Q 002200 840 KKNDLK--YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILS 917 (954)
Q Consensus 840 ~k~~~~--~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~ 917 (954)
+|.+.. ...++ ++.++.| ...+++... | +.| ...+++++..+ ..|+|+|++ ++
T Consensus 241 ~~~~~~~~~~~i~---~~~i~~K-~~~~~~~~~--~-------~~~-~~~~~~~~~~~------~~~~L~~~~-----l~ 295 (795)
T PRK06464 241 HKPTLKAGKPAIV---RRTLGSK-KIKMVYDDG--G-------EHG-VKTVDVPEEER------NRFSLTDEE-----VL 295 (795)
T ss_pred eccccccccccee---eeecccc-ceeeeeccC--C-------CCc-eeEEeCCHHHh------hccCCCHHH-----HH
Confidence 997642 01122 4555555 222333211 1 112 23456665433 689999997 79
Q ss_pred HHHHHHHHHHHHhCCceeEEEEEEC--CEEEEEeeccCC
Q 002200 918 SIARAGCEIEELFGSAQDIEGVVRD--GKIYVVQTRPQM 954 (954)
Q Consensus 918 ~La~la~~IE~~fG~PQDIEwai~~--g~LyILQaRP~v 954 (954)
+|++++.+||++||.|||||||+++ |+|||||+||+.
T Consensus 296 ~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPit 334 (795)
T PRK06464 296 ELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPET 334 (795)
T ss_pred HHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeeccc
Confidence 9999999999999999999999987 999999999973
No 2
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=8.5e-43 Score=427.78 Aligned_cols=245 Identities=27% Similarity=0.443 Sum_probs=198.6
Q ss_pred ceeeeCCCCC---CCccCHHHHHHHHHHccCCCcccCCCceecChhhhHHHHhhhhH-----------------H----H
Q 002200 672 RYAITSDEFT---GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNIN-----------------Q----V 727 (954)
Q Consensus 672 ~~vl~l~e~~---~~~VG~KAanLg~L~~~~p~g~~VP~GfvIPfg~fe~~L~~~~~-----------------~----l 727 (954)
++++++.+.. ...|||||+||++|.+ .||+||+|||||+++|++||+.+.. . .
T Consensus 3 ~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 79 (871)
T PRK06241 3 SYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQNEEFDALLDQLSALKLEDREQIGEIS 79 (871)
T ss_pred ceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhCCcHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4778887763 5789999999999999 8999999999999999999976420 0 1
Q ss_pred HHHH-----------------H-----------HHHhcCCCCCCCC------Cc-------ccHHHHHHHHHHHHHhcCC
Q 002200 728 QELK-----------------T-----------EMKSSGMPWPGDE------GE-------QRWEQAWMAIKKVWASKWN 766 (954)
Q Consensus 728 qeL~-----------------~-----------AvRSS~~~~aeD~------g~-------~~~e~l~~AIk~VWASlys 766 (954)
++++ + +||||+ .+||. |+ .+.+++++|||+||||+||
T Consensus 80 ~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa--~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~~~ 157 (871)
T PRK06241 80 AKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSA--TAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASLFT 157 (871)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCC--CccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhccC
Confidence 1111 1 356776 45663 32 2479999999999999999
Q ss_pred hhhHHHHHhcCCCcccccceeEEEEeeccCeeEEEEecCCCCCCCCceeeeecccccccccccccCcceeEEEeccCCCC
Q 002200 767 ERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKY 846 (954)
Q Consensus 767 ~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad~SGVl~T~nP~tgd~~~i~IEa~~GLGEtLVsG~~Gtpd~f~v~k~~~~~ 846 (954)
+||+.||+++|++++++.|||+||+||++++|||+||+||.+++.+.++|++++||||+||+|.+ +||+|++++ +
T Consensus 158 ~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~~--~-- 232 (871)
T PRK06241 158 ERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVRE--G-- 232 (871)
T ss_pred HHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEeC--C--
Confidence 99999999999999999999999999999999999999999999999999999999999999997 899999992 2
Q ss_pred ccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCcccCcccchHHHHHHHHHHHHHH
Q 002200 847 PRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEI 926 (954)
Q Consensus 847 ~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~~La~la~~I 926 (954)
.++ ++.++.|.. . ++... ++|+ ..+++++.. ++.|+|++++ +++|+++|.+|
T Consensus 233 -~i~---~~~i~~k~~-~-~~~~~----------~gg~-~~~~~~~~~------~~~~~L~~~~-----~~~L~~l~~~i 284 (871)
T PRK06241 233 -KII---DKTIATKKL-A-IYALK----------EGGT-ETKEIEPEQ------QKSQTLTDEQ-----ILELARLGRKI 284 (871)
T ss_pred -ceE---EEeccccce-E-EEecC----------CCce-EEEECCHHH------hcCCCCCHHH-----HHHHHHHHHHH
Confidence 232 455665521 2 22221 3443 344555432 3578999886 69999999999
Q ss_pred HHHhCCceeEEEEEECCEEEEEeeccCC
Q 002200 927 EELFGSAQDIEGVVRDGKIYVVQTRPQM 954 (954)
Q Consensus 927 E~~fG~PQDIEwai~~g~LyILQaRP~v 954 (954)
|++||.|||||||+++|+|||||+||+.
T Consensus 285 e~~~g~pqDIEw~~~~~~l~ilQaRPit 312 (871)
T PRK06241 285 EAHFGCPQDIEWCLADGTFYILQSRPIT 312 (871)
T ss_pred HHHcCCCcceEEEEECCEEEEEEcCCcc
Confidence 9999999999999999999999999973
No 3
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=5.3e-42 Score=416.01 Aligned_cols=254 Identities=25% Similarity=0.396 Sum_probs=198.3
Q ss_pred eeeeCCCCC---CCccCHHHHHHHHHHccCC-CcccCCCceecChhhhHHHHhhhhH-----------------H-----
Q 002200 673 YAITSDEFT---GELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNIN-----------------Q----- 726 (954)
Q Consensus 673 ~vl~l~e~~---~~~VG~KAanLg~L~~~~p-~g~~VP~GfvIPfg~fe~~L~~~~~-----------------~----- 726 (954)
++++|.++. ...|||||+||++|++.++ .||+||+|||||+++|++||+.+.- .
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~~l~~~i~~~l~~~~~~~~~~l~~~~ 80 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEENGIAQKIRDLLEELDVEDSEALAAAS 80 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhCChHHHHHHHHHhcCcCCHHHHHHHH
Confidence 356777663 5789999999999997332 4899999999999999999975310 0
Q ss_pred ----------------HHHHHH----------------HHHhcCCCCCCCC------Cc-------ccHHHHHHHHHHHH
Q 002200 727 ----------------VQELKT----------------EMKSSGMPWPGDE------GE-------QRWEQAWMAIKKVW 761 (954)
Q Consensus 727 ----------------lqeL~~----------------AvRSS~~~~aeD~------g~-------~~~e~l~~AIk~VW 761 (954)
.++|.+ +||||+ ..||. |+ .+.+++..|||+||
T Consensus 81 ~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa--~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v~ 158 (782)
T TIGR01418 81 AEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSA--TAEDLPDASFAGQQETYLNVTGEEEVLEHVKKCW 158 (782)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCC--CCCCCCCCCcccceeeeecCCCHHHHHHHHHHHH
Confidence 111111 245666 45663 22 24799999999999
Q ss_pred HhcCChhhHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEecCCCCCCCCceeeeecccccccccccccCcceeEEE
Q 002200 762 ASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVC 839 (954)
Q Consensus 762 ASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVl~T~nP~tgd~~~i~IEa~~GLGEtLVsG~~Gtpd~f~v 839 (954)
||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++||+++||||+||+|.. +||+|.+
T Consensus 159 aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~v 237 (782)
T TIGR01418 159 ASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYVV 237 (782)
T ss_pred HccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEEE
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999986 8999999
Q ss_pred eccCCCC--ccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCcccCcccchHHHHH
Q 002200 840 KKNDLKY--PRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILS 917 (954)
Q Consensus 840 ~k~~~~~--~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~ 917 (954)
+|.+... ..++ ++.++.| ...+++..+ | +.+....+++++..+ .+|+|+|++ ++
T Consensus 238 ~r~~~~~~~~~i~---~~~~~~k-~~~~~~~~~--g-------~~~~~~~~~~~~~~~------~~~~L~~~~-----l~ 293 (782)
T TIGR01418 238 FKPTLEQGKKAIL---ERTLGSK-KIKMVYDPD--G-------GNVETKIVEVPEEER------DAFSLSDEE-----IL 293 (782)
T ss_pred eccccccccccee---eeecccc-ceEEEEccC--C-------CCcceEEEeCCHHHh------hccCCCHHH-----HH
Confidence 9976420 0132 4555555 223333211 1 111134555555432 679999997 69
Q ss_pred HHHHHHHHHHHHhCCceeEEEEEE--CCEEEEEeeccC
Q 002200 918 SIARAGCEIEELFGSAQDIEGVVR--DGKIYVVQTRPQ 953 (954)
Q Consensus 918 ~La~la~~IE~~fG~PQDIEwai~--~g~LyILQaRP~ 953 (954)
+|++++.+||++||+|||||||++ +|+|||||+||+
T Consensus 294 ~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPi 331 (782)
T TIGR01418 294 ELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPE 331 (782)
T ss_pred HHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeecc
Confidence 999999999999999999999999 899999999996
No 4
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=2.4e-43 Score=390.05 Aligned_cols=237 Identities=33% Similarity=0.508 Sum_probs=165.1
Q ss_pred CCccCHHHHHHHHHHccCCCcccCCCceecChhhhHHHHhhhh-----HH------------------------------
Q 002200 682 GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNI-----NQ------------------------------ 726 (954)
Q Consensus 682 ~~~VG~KAanLg~L~~~~p~g~~VP~GfvIPfg~fe~~L~~~~-----~~------------------------------ 726 (954)
...||+||+||++|++ .|++||+|||||+++|++||+.+. +.
T Consensus 3 ~~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~lp 79 (327)
T PF01326_consen 3 ASLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESNGLREEIEQLLEPLDLSDREDLQAISKEIRELILSAPLP 79 (327)
T ss_dssp HHHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTCCHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEET--
T ss_pred hHHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcCChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhCCCC
Confidence 3457999999999997 789999999999999999995431 00
Q ss_pred ---HHHHHH------------HHHhcCCCCCCCC------Cc-------ccHHHHHHHHHHHHHhcCChhhHHHHHhcCC
Q 002200 727 ---VQELKT------------EMKSSGMPWPGDE------GE-------QRWEQAWMAIKKVWASKWNERAFFSTRRVKL 778 (954)
Q Consensus 727 ---lqeL~~------------AvRSS~~~~aeD~------g~-------~~~e~l~~AIk~VWASlys~RAv~yRr~~Gi 778 (954)
.++|.. +||||+ ..||. |+ ...+++++|||+||||+|++||+.||+++|+
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~aVRSSa--~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g~ 157 (327)
T PF01326_consen 80 EELVEELEAALEELGQRDQPLAVRSSA--TSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRGI 157 (327)
T ss_dssp HHHHHHHHHHHTHHHHHHHHCCCEECE---HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcccccccceEEEeccc--cccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcCC
Confidence 233332 256776 34552 21 2369999999999999999999999999999
Q ss_pred CcccccceeEEEEeeccCeeEEEEecCCCCCCCCc-eeeeecccccccccccccCcceeEEEeccCCCCccccCCCCccc
Q 002200 779 DHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSE-IYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPI 857 (954)
Q Consensus 779 ~~~~v~MAVLVQemV~ad~SGVl~T~nP~tgd~~~-i~IEa~~GLGEtLVsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~i 857 (954)
+++++.|||+||+||++++|||+||+||.+|+++. ++||+++||||+||+|.. +|++|.+++.++. +. ++.+
T Consensus 158 ~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~~~---~~---~~~~ 230 (327)
T PF01326_consen 158 PDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSDPR---IR---EREI 230 (327)
T ss_dssp TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EHHH---HH---EEE-
T ss_pred ChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCCcc---hh---hhhc
Confidence 99999999999999999999999999999999988 999999999999999997 8999999876532 21 2223
Q ss_pred ccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCcccCcccchHHHHHHHHHHHHHHHHHhCCceeEE
Q 002200 858 GLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIE 937 (954)
Q Consensus 858 g~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~~La~la~~IE~~fG~PQDIE 937 (954)
+.| ...++. ..++|+ ..++++.. +...++|++++ +++|++++.+||++||.|||||
T Consensus 231 ~~k-~~~~~~-----------~~~~~~-~~~~~~~~------~~~~~~l~~~~-----~~~L~~l~~~le~~~g~p~DIE 286 (327)
T PF01326_consen 231 GQK-SVQLVP-----------DEGGGL-EEVDVPEE------RQDSPSLSDEQ-----LQQLAELARKLEEHFGRPQDIE 286 (327)
T ss_dssp ----HCCCCC-----------CCTTTE-ECCCHHHH------CHCHHHHSHHH-----HHHHHHHHHHHHHHHTS-EEEE
T ss_pred CCc-eEEEEE-----------cCCCce-EEEeCchh------hhhhhhcCHHH-----HHHHHHHHHHHHHHcCCCeEEE
Confidence 322 111111 124453 34444432 34678888875 7999999999999999999999
Q ss_pred EEEECCEEEEEeeccCC
Q 002200 938 GVVRDGKIYVVQTRPQM 954 (954)
Q Consensus 938 wai~~g~LyILQaRP~v 954 (954)
||+++|+|||||+||++
T Consensus 287 w~~~~~~l~iLQaRPi~ 303 (327)
T PF01326_consen 287 WAIDGGQLYILQARPIT 303 (327)
T ss_dssp EEEETTEEEEEEEEE--
T ss_pred EEEECCEEEEEEecccc
Confidence 99999999999999974
No 5
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=4.6e-35 Score=340.61 Aligned_cols=212 Identities=25% Similarity=0.333 Sum_probs=166.4
Q ss_pred cCCceeeeCCCCC---CCccCHHHHHHHHHHccCCCcccCCCceecChhhhHHHHhhhhH---H--------HHHHHH--
Q 002200 669 FAGRYAITSDEFT---GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNIN---Q--------VQELKT-- 732 (954)
Q Consensus 669 ~~~~~vl~l~e~~---~~~VG~KAanLg~L~~~~p~g~~VP~GfvIPfg~fe~~L~~~~~---~--------lqeL~~-- 732 (954)
+..++++++.+.. .+++|||++||++|++ .|++||+|||||+.+|++|++.... . ++.+..
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 3567899999875 4689999999999998 7899999999999999999876531 1 111111
Q ss_pred -------------HHHhcC-CCCCC-----------------------------CC--------------C----cccHH
Q 002200 733 -------------EMKSSG-MPWPG-----------------------------DE--------------G----EQRWE 751 (954)
Q Consensus 733 -------------AvRSS~-~~~ae-----------------------------D~--------------g----~~~~e 751 (954)
++||++ .+.|+ |. | +..++
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp~~ 160 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCChHH
Confidence 244443 11111 10 0 12248
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCCCcccccceeEEEEeeccC-----eeEEEEecCCCCCCCCceeeeecccccccc
Q 002200 752 QAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-----YAFVIHTTNPSSGDSSEIYAEVVKGLGETL 826 (954)
Q Consensus 752 ~l~~AIk~VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVl~T~nP~tgd~~~i~IEa~~GLGEtL 826 (954)
++.+|||.||||+||+||+.||+++|++++. .|||+||+||.++ .|||+||+||.++++..+.+.+++|+||.|
T Consensus 161 qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~-~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe~v 239 (530)
T PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDG-GTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDV 239 (530)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCccc-CcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCHHH
Confidence 9999999999999999999999999998754 8999999999664 579999999999988777777899999999
Q ss_pred cccccCcceeEEEeccCCCCccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCccc
Q 002200 827 VGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLI 906 (954)
Q Consensus 827 VsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~plL 906 (954)
|+|.. +|+.|.+.+. ..|
T Consensus 240 VsG~~-~p~~~~~~~~-----------------------------------------------------------~~p-- 257 (530)
T PRK05878 240 VSGLV-DVAPITALRD-----------------------------------------------------------EQP-- 257 (530)
T ss_pred hcCCc-CCcchhhhcc-----------------------------------------------------------cCH--
Confidence 99876 5654322110 001
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhCCceeEEEEEECCEEEEEeeccC
Q 002200 907 TDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 953 (954)
Q Consensus 907 tD~~~r~~ll~~La~la~~IE~~fG~PQDIEwai~~g~LyILQaRP~ 953 (954)
..+++|++++.+||++||.||||||++++|+|||||+||.
T Consensus 258 -------~~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~ 297 (530)
T PRK05878 258 -------AVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSA 297 (530)
T ss_pred -------HHHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeecc
Confidence 1368999999999999999999999999999999999995
No 6
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=99.97 E-value=1.7e-30 Score=316.69 Aligned_cols=134 Identities=27% Similarity=0.343 Sum_probs=111.8
Q ss_pred cHHHHHHHHHHHHHhcCChhhHHHHHhcCCCcccccceeEEEEeeccC-----eeEEEEecCCCCCCCCceeeeec-ccc
Q 002200 749 RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-----YAFVIHTTNPSSGDSSEIYAEVV-KGL 822 (954)
Q Consensus 749 ~~e~l~~AIk~VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVl~T~nP~tgd~~~i~IEa~-~GL 822 (954)
.++++..||+.||||+||+||+.||+.+|++++ ..|||+||+||.++ .|||+||+||.++++. +++++. .|+
T Consensus 198 p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~VQ~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ 275 (856)
T TIGR01828 198 PKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNIQSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQ 275 (856)
T ss_pred CHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEEEEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCC
Confidence 478999999999999999999999999999986 89999999999664 7999999999999863 656654 489
Q ss_pred cccccccccCcceeEEEeccCCCCccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccC
Q 002200 823 GETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSS 902 (954)
Q Consensus 823 GEtLVsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~ 902 (954)
||.||+|.. +|+.|... +
T Consensus 276 ge~vVsG~~-tp~~~~~~-----------------------------------------------------~-------- 293 (856)
T TIGR01828 276 GEDVVAGIR-TPQPITAM-----------------------------------------------------E-------- 293 (856)
T ss_pred Cchhccccc-CcHHHHHh-----------------------------------------------------h--------
Confidence 999999875 44421100 0
Q ss_pred CcccCcccchHHHHHHHHHHHHHHHHHhCCceeEEEEEECCEEEEEeeccC
Q 002200 903 DRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 953 (954)
Q Consensus 903 ~plLtD~~~r~~ll~~La~la~~IE~~fG~PQDIEwai~~g~LyILQaRP~ 953 (954)
.+.++ .+++|++++.+||++||.||||||++++|+|||||+||.
T Consensus 294 --~~~p~-----~~~~L~~~a~~lE~~fg~pqDIEfai~~g~L~iLQ~RP~ 337 (856)
T TIGR01828 294 --ADMPD-----VYKELLDIAEKLEGHYRDMQDIEFTIERGKLYMLQTRNG 337 (856)
T ss_pred --hcChH-----HHHHHHHHHHHHHHHcCCcccceEEEECCEEEEEEeecC
Confidence 00111 368999999999999999999999999999999999994
No 7
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.9e-31 Score=322.96 Aligned_cols=237 Identities=26% Similarity=0.398 Sum_probs=183.3
Q ss_pred CCCccCHHHHHHHHHHccCCCcccCCCceecChhhhHHHHhhhh--------------H---H-----------------
Q 002200 681 TGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNI--------------N---Q----------------- 726 (954)
Q Consensus 681 ~~~~VG~KAanLg~L~~~~p~g~~VP~GfvIPfg~fe~~L~~~~--------------~---~----------------- 726 (954)
+..++|||++||++|.+ .|++||+||||++.+|..|++... + .
T Consensus 15 ~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~ 91 (740)
T COG0574 15 DVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKENGLADKILKILSALDLNDNVELEFRSELIRPLIMPTPL 91 (740)
T ss_pred hhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhccchHHHHHHHhcCCCcchhHHHHHHHHHHHhhhccCCC
Confidence 46899999999999999 789999999999999999998541 0 0
Q ss_pred ----HHHHHH---------------HHHhcCCCCCCCC------Cc-------ccHHHHHHHHHHHHHhcCChhhHHHHH
Q 002200 727 ----VQELKT---------------EMKSSGMPWPGDE------GE-------QRWEQAWMAIKKVWASKWNERAFFSTR 774 (954)
Q Consensus 727 ----lqeL~~---------------AvRSS~~~~aeD~------g~-------~~~e~l~~AIk~VWASlys~RAv~yRr 774 (954)
.+++.+ ++|||+ .++|. |+ ...++++.+|++||||+||+||+.||.
T Consensus 92 p~~l~~ei~~al~~~~~~~~~~~~~avrss~--taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~aSl~~~RAi~Yr~ 169 (740)
T COG0574 92 PEDLSAEIAEALEELTGYGDSDADVAVRSSA--TAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWASLFVDRAIAYRY 169 (740)
T ss_pred ChHHHHHHHHHHHHhccccccceeEEEeecc--ccccCCcccccccccccCCcCCHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 111111 234455 23332 22 357999999999999999999999999
Q ss_pred hcCCCcccccceeEEEEeeccC--eeEEEEecCCCCCCCCceeeeecccccccccccccCcceeEEEeccCCCCccccCC
Q 002200 775 RVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGY 852 (954)
Q Consensus 775 ~~Gi~~~~v~MAVLVQemV~ad--~SGVl~T~nP~tgd~~~i~IEa~~GLGEtLVsG~~Gtpd~f~v~k~~~~~~~Vl~~ 852 (954)
.+|+++..+.|||+||+||.++ .|||+||+||.+|....+.+++.+||||.+|+|.+ +|+.|.+.|... +
T Consensus 170 ~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~~k~~~----~--- 241 (740)
T COG0574 170 HNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYVSKDTL----V--- 241 (740)
T ss_pred HcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEEeccch----h---
Confidence 9999999999999999999999 99999999999999999999999999999999998 999999999753 0
Q ss_pred CCcccccccceeEEEecCCCCCccccccCCCc-cccccCchhhHhhhcccCCcccCcccchHHHHHHHHHHHHHHHHHhC
Q 002200 853 PSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGL-YDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFG 931 (954)
Q Consensus 853 ~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl-~~svp~~~~~~~~vdys~~plLtD~~~r~~ll~~La~la~~IE~~fG 931 (954)
++..+.+ ...+++..+. +.+. .+...++.. ......++|.+ +.+|++++.+||.+|+
T Consensus 242 -~~~~~~~-~~~~i~~~~~---------~e~~~~~~~ev~~~------~~~~~~l~~~~-----i~~la~~~~~ie~~~~ 299 (740)
T COG0574 242 -EKALPSK-LIKLIYDADK---------LEGHRARIEEIEDE------FTDAFSLSDEE-----IKRLAKLAIKIEKHYG 299 (740)
T ss_pred -hhhhhHH-HHHHHHHhhc---------ccceeeeeccCChH------HhhhhhccHHH-----HHHHHHHHHHHHHhhC
Confidence 1222221 1122222110 1110 112222221 12456777775 6999999999999999
Q ss_pred CceeEEEEEECCEEEEEeeccC
Q 002200 932 SAQDIEGVVRDGKIYVVQTRPQ 953 (954)
Q Consensus 932 ~PQDIEwai~~g~LyILQaRP~ 953 (954)
.||||||++++ ++||+|+||.
T Consensus 300 ~p~diEw~id~-~~~ilq~rP~ 320 (740)
T COG0574 300 RPMDIEWAIDG-KLYILQARPE 320 (740)
T ss_pred CchhhhhhhcC-ceEEEEecCc
Confidence 99999999998 8999999995
No 8
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=99.97 E-value=2.8e-30 Score=314.12 Aligned_cols=134 Identities=30% Similarity=0.424 Sum_probs=113.1
Q ss_pred cHHHHHHHHHHHHHhcCChhhHHHHHhcCCCcccccceeEEEEeeccC-----eeEEEEecCCCCCCCCceeeee-cccc
Q 002200 749 RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-----YAFVIHTTNPSSGDSSEIYAEV-VKGL 822 (954)
Q Consensus 749 ~~e~l~~AIk~VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVl~T~nP~tgd~~~i~IEa-~~GL 822 (954)
.+++++.||+.||+|+||+||+.||+.+|++++ ..|||+||+||.++ .|||+||+||.||++ .+++++ +.|+
T Consensus 204 p~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~g~AV~VQ~MV~gn~~~~s~SGV~FTrdP~TG~~-~~~Ge~l~~aq 281 (879)
T PRK09279 204 PYEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-WGTAVNVQAMVFGNMGEDSGTGVAFTRNPSTGEK-KLYGEFLINAQ 281 (879)
T ss_pred hHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-cCceEEEEeccccCCCCCcceEEEEeCCCCCCCC-ceeEEEecCCC
Confidence 478999999999999999999999999999986 89999999999766 699999999999987 456665 5799
Q ss_pred cccccccccCcceeEEEeccCCCCccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccC
Q 002200 823 GETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSS 902 (954)
Q Consensus 823 GEtLVsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~ 902 (954)
||.||+|.. +|+.|. . + +
T Consensus 282 GedVVsG~~-tp~~~~---------------~---------------------l-----------------~-------- 299 (879)
T PRK09279 282 GEDVVAGIR-TPQPIP---------------S---------------------L-----------------E-------- 299 (879)
T ss_pred ChhhhcCcc-CcchhH---------------H---------------------H-----------------h--------
Confidence 999999876 554320 0 0 0
Q ss_pred CcccCcccchHHHHHHHHHHHHHHHHHhCCceeEEEEEECCEEEEEeeccC
Q 002200 903 DRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 953 (954)
Q Consensus 903 ~plLtD~~~r~~ll~~La~la~~IE~~fG~PQDIEwai~~g~LyILQaRP~ 953 (954)
. ..+ ..+++|++++.+||++||.||||||++++|+|||||+||.
T Consensus 300 -~-~~p-----~~~~~L~~~~~~LE~~f~~pqDIEftie~g~L~iLQtRp~ 343 (879)
T PRK09279 300 -E-AMP-----EVYAELVDIAKKLEKHYRDMQDIEFTIERGKLYMLQTRNG 343 (879)
T ss_pred -h-cCh-----HHHHHHHHHHHHHHHHhCCCeeeEEEEECCEEEEEEeCCc
Confidence 0 001 1368999999999999999999999999999999999994
No 9
>PRK05849 hypothetical protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=278.53 Aligned_cols=186 Identities=21% Similarity=0.229 Sum_probs=142.6
Q ss_pred CCccCHHHHHHHHHHccCCCcccCCCceecChhhhHHHHhhhhHHHHHHHH-------HHHhcCCCCCCCC------Cc-
Q 002200 682 GELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQVQELKT-------EMKSSGMPWPGDE------GE- 747 (954)
Q Consensus 682 ~~~VG~KAanLg~L~~~~p~g~~VP~GfvIPfg~fe~~L~~~~~~lqeL~~-------AvRSS~~~~aeD~------g~- 747 (954)
.-.+|+||++|+.|++++ .+++||+++++|...|.+..+.. ++.|.. +||||+ ..||. |+
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~~~~~~---~~~i~~~~~~~~laVRSSa--~~ED~~~~S~AGq~ 78 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLSNKDKV---LEEIQNSFPADKLIVRSSS--RSEDSSSSSNAGAF 78 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhccCHHHH---HHHHHHhcCCCeEEEECCC--cccCCCcCccccCc
Confidence 456899999999999866 48999999999998776544433 233332 689998 45663 22
Q ss_pred --------ccHHHHHHHHHHHHHhcCChhhHHHHHhcCCCcccccceeEEEEeec-cCeeEEEEecCCCCCCCCceeeee
Q 002200 748 --------QRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIIN-ADYAFVIHTTNPSSGDSSEIYAEV 818 (954)
Q Consensus 748 --------~~~e~l~~AIk~VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~-ad~SGVl~T~nP~tgd~~~i~IEa 818 (954)
...+++..||++||||+++ ++ .|+|+||+||. +.+|||+||+||.+|++. .++|.
T Consensus 79 ~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~~----~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~-~~iey 142 (783)
T PRK05849 79 LSILNVNADSKDQLLKAIEKVIASYGT-----------SK----DDEILVQPMLEDIVLSGVAMSRDPESGAPY-YVINY 142 (783)
T ss_pred eeEecCCCCcHHHHHHHHHHHHHhhCC-----------CC----CCeEEEEeCccCCCceEEEEECCCCCCCCc-eEEEE
Confidence 2346999999999999776 22 38999999998 699999999999999875 45555
Q ss_pred -cccccccccccccCcceeEEEeccCCCCccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhh
Q 002200 819 -VKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVV 897 (954)
Q Consensus 819 -~~GLGEtLVsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~ 897 (954)
++|+||.||+|.. +|..+.+.+.+
T Consensus 143 ~~~G~ge~VVsG~~-t~~~~~~~~~~------------------------------------------------------ 167 (783)
T PRK05849 143 DESGSTDSVTSGSG-GSATTVYHYRD------------------------------------------------------ 167 (783)
T ss_pred cCCCCCcceecccC-CCCceeeeccc------------------------------------------------------
Confidence 4899999999885 55543332210
Q ss_pred hcccCCcccCcccchHHHHHHHHHHHHHHHHHhCC-ceeEEEEE-ECCEEEEEeeccCC
Q 002200 898 LDYSSDRLITDGHFQQSILSSIARAGCEIEELFGS-AQDIEGVV-RDGKIYVVQTRPQM 954 (954)
Q Consensus 898 vdys~~plLtD~~~r~~ll~~La~la~~IE~~fG~-PQDIEwai-~~g~LyILQaRP~v 954 (954)
.++++++ .+++|++++++||++||. |||||||+ .+|+|||||+||+.
T Consensus 168 -----~~~l~p~-----~~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~lLQ~RPi~ 216 (783)
T PRK05849 168 -----ALVFKPP-----RLKKLIELIRELEALFGCDFLDIEFAIDEKEELYILQVRPIT 216 (783)
T ss_pred -----cccCCHH-----HHHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEEEEccCCC
Confidence 0122223 368999999999999986 99999999 58999999999963
No 10
>PLN02784 alpha-amylase
Probab=98.85 E-value=2.1e-09 Score=130.70 Aligned_cols=65 Identities=34% Similarity=0.595 Sum_probs=60.9
Q ss_pred CCCCcccc-cccccccccccCCCCCCceeeEEEEEecccccccceEEEec--CCceeecCCCceEEEccc
Q 002200 1 MPAGSVSL-SGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQS--GGNWIKNKGSDFYVDFSY 67 (954)
Q Consensus 1 ~p~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--~~~w~~~~~~d~~~~~~~ 67 (954)
+||||+.. ++||||||+..+..+..+++| ++|++. +.|.||+|||++ +|+|||++|+||+|+|..
T Consensus 142 ~PpgS~~~~~~A~eT~f~~~s~~~~~~~v~-iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~ 209 (894)
T PLN02784 142 RPPGSIAIKDYAIETPLKKSSEGDSFYEVT-IDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVD 209 (894)
T ss_pred CCCCcEEecCeEEeccccccccCCcceeEE-EEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEeccc
Confidence 58999998 899999999999999999987 899988 899999999998 899999999999999975
No 11
>PLN02784 alpha-amylase
Probab=98.78 E-value=5.1e-09 Score=127.47 Aligned_cols=66 Identities=24% Similarity=0.425 Sum_probs=57.5
Q ss_pred CCCCcccccccccccccccCCCCCCceeeEEEEEecccccccceEEEec-CCceeecCCCceEEEccccccc
Q 002200 1 MPAGSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQS-GGNWIKNKGSDFYVDFSYESKQ 71 (954)
Q Consensus 1 ~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~w~~~~~~d~~~~~~~~~~~ 71 (954)
+|+||+..++||||||...++.+.+++. +++ ++.+.||+|||++ +|+|||++|+||||+|...++.
T Consensus 331 ~P~~sv~~~kA~eT~~~~~~~~~~~~~~--~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~ 397 (894)
T PLN02784 331 PPETSLFKNKALQTMLQQKDDGNGSSGL--FSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL 397 (894)
T ss_pred CCCcceecccccccccccccCCCcceEE--Eec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence 4789999999999999999988877775 555 6799999999998 8999999999999999875443
No 12
>PRK05849 hypothetical protein; Provisional
Probab=96.60 E-value=0.023 Score=70.93 Aligned_cols=175 Identities=14% Similarity=0.070 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHH--hhHHHH----HHhhcchHHHHhhhcCccchhhccccHHHHhhchhHH----HHHHHHhhhHH
Q 002200 453 ALFAKSVLDRTRLALA--SKADWY----QKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAA----LSLLLNRLDPV 522 (954)
Q Consensus 453 Al~~kA~ldR~r~~~~--~~~d~~----~~~~q~~a~~lG~~lg~e~~~v~~FtEe~IRas~~f~----lS~ll~~L~~~ 522 (954)
...++.+++++|..++ +++-.. ....-.....+|..+|+++.-+--++-+.|++...-. ....+..+-..
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 3557888888888887 333222 2233333446888889887777777777777422110 11222211111
Q ss_pred HHHH--------------cC---------CCCceEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCC-CCCCC-CC
Q 002200 523 LRKT--------------AS---------LGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVK-GEEEI-PD 577 (954)
Q Consensus 523 lr~~--------------a~---------~~~wqvlspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~-G~EeI-p~ 577 (954)
.++. .+ ...=..++||.+.|.++++..-. . ......|||+..++ |-.-+ ..
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~---~-~~~~G~Ilv~~~tdPg~~~lf~~ 726 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDN---D-DDLEGKIVCIENADPGYDWLFTK 726 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChh---h-cCCCCCEEEeCCCCccchHHHhh
Confidence 1110 00 00012379999999999987642 1 11234699998876 22222 12
Q ss_pred CcEEEEcCCCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEEEeccCce
Q 002200 578 GTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 634 (954)
Q Consensus 578 ~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l~vs~~~v 634 (954)
+++||||..-. ..||.+++||.+|||-+.--.....+.+ .+|+.|.+......|
T Consensus 727 ~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v 780 (783)
T PRK05849 727 GIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRI 780 (783)
T ss_pred heeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEE
Confidence 69999998876 8999999999999999654332112322 368888887765444
No 13
>PRK08296 hypothetical protein; Provisional
Probab=96.36 E-value=0.0046 Score=74.91 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=70.2
Q ss_pred eeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChh
Q 002200 535 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 612 (954)
Q Consensus 535 lspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~ 612 (954)
++||.+.|.+++|.+..+.. ....+.|||+...+ -+.+| ..+.||||..-. .+||.++.||+.|||-+..-..
T Consensus 505 ~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~td-P~~~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv~~- 579 (603)
T PRK08296 505 ASPGVVEGPARVIRSADELS--EVQEGEILVCPVTS-PSWAPIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGTGN- 579 (603)
T ss_pred cCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCC-HHHHHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcCcc-
Confidence 58999999999998866543 23457899998776 22343 479999998766 8999999999999998766542
Q ss_pred hhHHhhhcCCCeEEEEeccCceEE
Q 002200 613 ILADLQSNEGKMLHLKPTSADIAY 636 (954)
Q Consensus 613 ~~~~l~~l~Gk~V~l~vs~~~v~i 636 (954)
... +-.+|..|.+..+.+.|.+
T Consensus 580 at~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 580 ATK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred Hhh--hcCCCCEEEEECCCCEEEE
Confidence 111 2247999998887755544
No 14
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=96.07 E-value=0.0059 Score=55.23 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCCeEEEEecCCCCCCCC---CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEEEec
Q 002200 559 DRPTILLARRVKGEEEIP---DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPT 630 (954)
Q Consensus 559 ~~p~Ill~~~v~G~EeIp---~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l~vs 630 (954)
.+++||+++...-. +++ ..+.||||..-. ++||.+++||.+|||.+..-.. .... -.+|.+|.+..+
T Consensus 9 ~~~~IlV~~~~~p~-~~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~-~~~~--i~~g~~v~lDg~ 78 (80)
T PF00391_consen 9 PEGVILVAEELTPS-DLALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGD-ATEA--IKDGDWVTLDGN 78 (80)
T ss_dssp TSTEEEEESS--TT-CHHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTT-HHHH--SCTTEEEEEETT
T ss_pred CCCEEEEECCCCHH-HHhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeecc-Hhhc--cCCCCEEEEECC
Confidence 45789999887633 333 489999998876 8999999999999999887762 2222 236888887544
No 15
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.83 E-value=0.013 Score=74.26 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=69.2
Q ss_pred eeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChh
Q 002200 535 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 612 (954)
Q Consensus 535 lspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~ 612 (954)
+++|.+.|.++++.+..+. ....+.|||+...++ ...| ..+.||||..-+ .+||.+|.||..|||-++.-..
T Consensus 773 ~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~p-~~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~~- 846 (871)
T PRK06241 773 VSSGVVEGRARVILNPEDA---DLEKGDILVTAFTDP-GWTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVEN- 846 (871)
T ss_pred cCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCCH-HHHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEcccc-
Confidence 6899999999998876553 234567999988875 2333 379999988776 9999999999999998764432
Q ss_pred hhHHhhh-cCCCeEEEEeccCceEE
Q 002200 613 ILADLQS-NEGKMLHLKPTSADIAY 636 (954)
Q Consensus 613 ~~~~l~~-l~Gk~V~l~vs~~~v~i 636 (954)
. .+. .+|..|.+......|.+
T Consensus 847 ~---~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 847 A---TKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred H---HhhcCCCCEEEEECCCCEEEE
Confidence 2 333 37999999877655544
No 16
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=94.45 E-value=0.047 Score=65.61 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=65.1
Q ss_pred eEeeeeEEEEEEEE-eccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEec
Q 002200 533 QVISPVEVFGYVAV-VDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCF 609 (954)
Q Consensus 533 qvlspG~A~G~L~~-V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~ 609 (954)
...+||.+.|+++. .++..+.. ....+.|||+...+ -++++ ..+.||||..-. ..||.++.||++|||-+..-
T Consensus 354 ~~as~G~a~G~V~~~~~~~~~~~--~~~~g~ILV~~~t~-P~~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~VvG~ 429 (530)
T PRK05878 354 LPACPGVVSGTAYTDVDEALDAA--DRGEPVILVRDHTR-PDDVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVAVVGC 429 (530)
T ss_pred eeccCceEEEEEEECHHHHHHHh--hccCCEEEEECCCC-HHHHhhhHhheEEEEccCC-ccchHHHHHHHcCCCEEEcc
Confidence 45799999999864 22222211 12346788887765 23344 369999998876 89999999999999998754
Q ss_pred ChhhhHHhhhcCCCeEEEEeccCce
Q 002200 610 DPNILADLQSNEGKMLHLKPTSADI 634 (954)
Q Consensus 610 d~~~~~~l~~l~Gk~V~l~vs~~~v 634 (954)
... ...+ .+|..|.+......|
T Consensus 430 ~~~-~~~~--~~G~~VtvDg~~G~V 451 (530)
T PRK05878 430 GAG-VAAA--LAGKEITVDGYEGEV 451 (530)
T ss_pred cch-hhcc--CCCCEEEEECCCCEE
Confidence 422 2223 469999988766443
No 17
>PRK05865 hypothetical protein; Provisional
Probab=94.35 E-value=0.073 Score=67.26 Aligned_cols=95 Identities=18% Similarity=0.083 Sum_probs=68.9
Q ss_pred eeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChh
Q 002200 535 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 612 (954)
Q Consensus 535 lspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~ 612 (954)
++||.+.|.++++.. .+ ......+.|||++..+ -+.+| ..+.||||..-. .+||.++.||..|||-+.+-..
T Consensus 741 ~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~td-p~~~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~~- 814 (854)
T PRK05865 741 VCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTD-VGYTAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQG- 814 (854)
T ss_pred ccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCC-HHHHHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEcccc-
Confidence 588899999999972 22 1233457899998766 12233 379999998766 8999999999999999876542
Q ss_pred hhHHhhhcCCCeEEEEeccCceEEE
Q 002200 613 ILADLQSNEGKMLHLKPTSADIAYS 637 (954)
Q Consensus 613 ~~~~l~~l~Gk~V~l~vs~~~v~i~ 637 (954)
... +-.+|+.|.+..+...|.+-
T Consensus 815 at~--~l~dG~~V~vDg~~G~V~~l 837 (854)
T PRK05865 815 ATR--FLPPGALVEVDGATGEIHVV 837 (854)
T ss_pred Hhh--cCCCCCEEEEECCCcEEEEe
Confidence 122 12389999998887666663
No 18
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=94.34 E-value=0.05 Score=68.31 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=68.5
Q ss_pred eEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecC
Q 002200 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 610 (954)
Q Consensus 533 qvlspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d 610 (954)
..++||.+.|.++++.+..+.. ....+.|||++...- +++| ..+.||||..-. ..||.++.||++|||-+..-.
T Consensus 358 ~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p-~~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg~~ 433 (782)
T TIGR01418 358 RAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDP-DWEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVGTG 433 (782)
T ss_pred cccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEccc
Confidence 3479999999999998877653 234567999877652 3344 389999998776 899999999999999765433
Q ss_pred hhhhHHhhhcCCCeEEEEecc
Q 002200 611 PNILADLQSNEGKMLHLKPTS 631 (954)
Q Consensus 611 ~~~~~~l~~l~Gk~V~l~vs~ 631 (954)
+....+ .+|..|.+....
T Consensus 434 -~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 434 -DATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred -chhhcc--cCCCEEEEEcCC
Confidence 222222 369999988876
No 19
>PRK06354 pyruvate kinase; Provisional
Probab=94.24 E-value=0.048 Score=66.33 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=68.1
Q ss_pred eeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChh
Q 002200 535 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 612 (954)
Q Consensus 535 lspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~ 612 (954)
.+||.+.|.++++....+. .....+.|||++..+- +.+| ..+.||||..-. ..||.++.||.+|||-+..-...
T Consensus 488 as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~~~ 563 (590)
T PRK06354 488 IGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVKNA 563 (590)
T ss_pred cccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEeccch
Confidence 4789999999998876553 2345678999988763 3444 489999998766 89999999999999998765422
Q ss_pred hhHHhhhcCCCeEEEEeccCc
Q 002200 613 ILADLQSNEGKMLHLKPTSAD 633 (954)
Q Consensus 613 ~~~~l~~l~Gk~V~l~vs~~~ 633 (954)
.. .-.+|..|.+......
T Consensus 564 -~~--~l~~G~~v~vDg~~G~ 581 (590)
T PRK06354 564 -TS--LIKDGQIITVDAARGV 581 (590)
T ss_pred -hh--ccCCCCEEEEECCCCE
Confidence 22 2246999888776533
No 20
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=94.16 E-value=0.045 Score=69.19 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=67.4
Q ss_pred EeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecCh
Q 002200 534 VISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDP 611 (954)
Q Consensus 534 vlspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~ 611 (954)
..+||.|+|.+++...-..-. ....++.|||..... -++++ ..+.||||..-. ..||.+|.||++|+|-++.-..
T Consensus 399 ~aspGaa~G~v~~~~~~a~~~-~~~~~~~ILV~~et~-P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG~~~ 475 (879)
T PRK09279 399 PASPGAATGKIVFTADEAEAL-AARGEKVILVRPETS-PEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVGAGA 475 (879)
T ss_pred ccCCCeEEEEEEEChHHHHHh-hccCCCEEEEECCCC-HHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEeccCc
Confidence 369999999997743322111 112456788887655 35565 368899998776 8999999999999999664332
Q ss_pred hhhH---------HhhhcCCCeEEEEeccCceEEEE
Q 002200 612 NILA---------DLQSNEGKMLHLKPTSADIAYSV 638 (954)
Q Consensus 612 ~~~~---------~l~~l~Gk~V~l~vs~~~v~i~~ 638 (954)
..++ .-.-.+|..|.+..+...|...+
T Consensus 476 ~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~ 511 (879)
T PRK09279 476 LRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGE 511 (879)
T ss_pred ceEecccCEEEECCEEecCCCEEEEECCCCEEEECC
Confidence 1111 11224688998888775555543
No 21
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=93.86 E-value=0.052 Score=68.24 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=67.3
Q ss_pred eEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecC
Q 002200 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 610 (954)
Q Consensus 533 qvlspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d 610 (954)
..++||.+.|.++++.+..+... ...+.|||++... -++++ ..+.||||..-. ..||.++.||++|||-+.=-.
T Consensus 360 ~~~~~G~~~G~v~v~~~~~~~~~--~~~g~ILV~~~~~-p~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg~~ 435 (795)
T PRK06464 360 RAIGPGIGSGKVRVILDISEMDK--VQPGDVLVTDMTD-PDWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVGTG 435 (795)
T ss_pred cccCCCceeeEEEEeCCHHHHHh--cCCCeEEEECCCC-HHHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEccC
Confidence 34689999999999988766542 3456799887765 23444 379999998776 899999999999999743221
Q ss_pred hhhhHHhhhcCCCeEEE---EeccCceEE
Q 002200 611 PNILADLQSNEGKMLHL---KPTSADIAY 636 (954)
Q Consensus 611 ~~~~~~l~~l~Gk~V~l---~vs~~~v~i 636 (954)
+....+ .+|..|.+ ......+..
T Consensus 436 -~~~~~l--~~G~~v~v~~~Dg~~G~v~~ 461 (795)
T PRK06464 436 -NATEVL--KDGQEVTVSCAEGDTGYVYE 461 (795)
T ss_pred -ccccee--cCCCEEEEEeccCCCcEEEe
Confidence 222222 36999988 554433433
No 22
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=93.45 E-value=0.076 Score=67.22 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=67.3
Q ss_pred EeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecCh
Q 002200 534 VISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDP 611 (954)
Q Consensus 534 vlspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~ 611 (954)
..+||.+.|++++...-.... ....++.|||..... -++++ ..+.||||..-. ..||.++.||++|||-++.-..
T Consensus 393 ~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~-P~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG~~~ 469 (856)
T TIGR01828 393 PASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETS-PEDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSGCEE 469 (856)
T ss_pred ccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCC-HHHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEcccc
Confidence 469999999998763322111 112456788887765 23454 368999998877 8999999999999999765432
Q ss_pred hhhH---------HhhhcCCCeEEEEeccCceEEE
Q 002200 612 NILA---------DLQSNEGKMLHLKPTSADIAYS 637 (954)
Q Consensus 612 ~~~~---------~l~~l~Gk~V~l~vs~~~v~i~ 637 (954)
..++ .-.-.+|..|.+..+...|...
T Consensus 470 ~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g 504 (856)
T TIGR01828 470 LKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLG 504 (856)
T ss_pred cccccccceeeeCCeEecCCCEEEEECCCCEEEEC
Confidence 2111 1122468888888776555543
No 23
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=92.93 E-value=0.17 Score=60.17 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCCeEEEEecCCCCC--CCC-CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEEEeccCceE
Q 002200 559 DRPTILLARRVKGEE--EIP-DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIA 635 (954)
Q Consensus 559 ~~p~Ill~~~v~G~E--eIp-~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l~vs~~~v~ 635 (954)
+.|.|||++...=-+ .++ .+|.||+|..-. ..||.+++||.+|||-+.=-.. .+. .-.+|..|-+......+.
T Consensus 395 ~~~~ILVA~dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~~-~~~--~~~~G~~vilDG~~G~v~ 470 (473)
T PRK11377 395 NSPTILLAENIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQGE-KLY--AIQPEETLTLDVKTQRLN 470 (473)
T ss_pred CCCEEEEECCCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcchh-hHh--hccCCCEEEEECCCCEEE
Confidence 568899985443000 011 279999998776 8899999999999997543221 222 224688888877664443
No 24
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=90.45 E-value=0.37 Score=46.14 Aligned_cols=96 Identities=18% Similarity=0.250 Sum_probs=68.8
Q ss_pred eEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC---CCcEEEEcCCCCCcchhhhhhcccCCcceEEec
Q 002200 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP---DGTVAVLTADMPDVLSHVSVRARNCKVCFATCF 609 (954)
Q Consensus 533 qvlspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp---~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~ 609 (954)
|.|-.|.+.|+.++-++-.+...+ +.+-.||++...+ .|+= ....||||.+.. .-||-+|-+++.|||.+.=.
T Consensus 6 qgIg~gsv~G~~~vA~~~~~~~~k-~~~g~iLv~~std--~d~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 6 QGIGRGSVSGRAVVADSGKEAEQK-FEEGVILVTPSTD--ADFVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred eeecccceeeEEEEccCHhHhhCC-cccCcEEEeccCC--hhhHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEe
Confidence 567788899999888876654322 3456799999988 4443 278999999988 99999999999999998754
Q ss_pred ChhhhHHhhhcCCCeEEEEeccCceEE
Q 002200 610 DPNILADLQSNEGKMLHLKPTSADIAY 636 (954)
Q Consensus 610 d~~~~~~l~~l~Gk~V~l~vs~~~v~i 636 (954)
+.. .+.+ .+|..|.+..+- |+.+
T Consensus 82 ~~a-t~~i--~dG~~vTvD~~r-G~VY 104 (111)
T COG3848 82 KKA-TQLI--RDGAIVTVDAQR-GVVY 104 (111)
T ss_pred cch-hhhc--cCCCEEEEeccc-ceEE
Confidence 422 2211 367777766543 4444
No 25
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=89.23 E-value=0.41 Score=58.37 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=53.9
Q ss_pred CCCeEEEEecCCCCC--CCC-CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEEEeccCceE
Q 002200 559 DRPTILLARRVKGEE--EIP-DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIA 635 (954)
Q Consensus 559 ~~p~Ill~~~v~G~E--eIp-~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l~vs~~~v~ 635 (954)
..|.|||++...-.+ .++ ..|.||||..-. ..||.+++||++|||-+..-. +....+ .+|+.|.+......+.
T Consensus 153 ~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~~--~~G~~vilDg~~G~v~ 228 (575)
T PRK11177 153 QEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQV--KNGDYLILDAVNNQIY 228 (575)
T ss_pred CCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhhc--cCCCEEEEECCCCEEE
Confidence 457788887766222 111 379999998776 889999999999999765443 222222 3699999988776666
Q ss_pred EEE
Q 002200 636 YSV 638 (954)
Q Consensus 636 i~~ 638 (954)
+.+
T Consensus 229 ~~P 231 (575)
T PRK11177 229 VNP 231 (575)
T ss_pred ECC
Confidence 655
No 26
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=87.67 E-value=0.57 Score=57.03 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=53.4
Q ss_pred CCCeEEEEecCCCCCCCC----CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEEEeccCce
Q 002200 559 DRPTILLARRVKGEEEIP----DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 634 (954)
Q Consensus 559 ~~p~Ill~~~v~G~EeIp----~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l~vs~~~v 634 (954)
..|.|||++...= +++. .++.||+|..-. ..||.++.||++|||-+..-. +.... -.+|..|.+....+.+
T Consensus 152 ~~~~IlVa~~l~P-s~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~-~~~~~--~~~G~~v~vDg~~G~v 226 (565)
T TIGR01417 152 QDEVILVAEDLTP-SETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTK-SVTSQ--VKNGDTVIIDGVKGIV 226 (565)
T ss_pred CCCeEEEecCCCH-HHHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcch-hHHhh--CCCCCEEEEECCCCEE
Confidence 4577888876541 2332 369999998765 889999999999999766543 22222 2369999998887666
Q ss_pred EEEE
Q 002200 635 AYSV 638 (954)
Q Consensus 635 ~i~~ 638 (954)
.+.+
T Consensus 227 ~~~P 230 (565)
T TIGR01417 227 IFNP 230 (565)
T ss_pred EeCC
Confidence 6654
No 27
>PRK03955 hypothetical protein; Reviewed
Probab=86.84 E-value=2.8 Score=41.97 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=62.9
Q ss_pred eEeeeeEEEEEEEEeccccc----cccCC----------CC---CCeEEEEecCCCCCCCC----------CCcEEEEcC
Q 002200 533 QVISPVEVFGYVAVVDELLA----VQDKS----------YD---RPTILLARRVKGEEEIP----------DGTVAVLTA 585 (954)
Q Consensus 533 qvlspG~A~G~L~~V~~l~~----v~~~~----------~~---~p~Ill~~~v~G~EeIp----------~~VaGVit~ 585 (954)
..+++|.+.|++.+.++--. +.+.+ +. .-.||++....|---=+ -.=+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 46899999999988775221 11111 00 23588888877651100 012678887
Q ss_pred CCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEEEeccCceEE
Q 002200 586 DMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAY 636 (954)
Q Consensus 586 ~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l~vs~~~v~i 636 (954)
+.-+.|||-++.| +||.+...+ .+.|+ +|.+|++..+...+.+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEVEI 128 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEEEE
Confidence 7766999999999 999998666 33333 8999998765544443
No 28
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=85.94 E-value=1.2 Score=53.80 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=54.8
Q ss_pred CCCeEEEEecCCCCCCCC---CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEEEeccCceE
Q 002200 559 DRPTILLARRVKGEEEIP---DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIA 635 (954)
Q Consensus 559 ~~p~Ill~~~v~G~EeIp---~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l~vs~~~v~ 635 (954)
++|.|++++..+=-+-.. ..|.|++|..-+ .-||.++.||..+||-+.-.... ...++ +|+.|-+....+.+.
T Consensus 154 ~~~~IlvA~dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~-~~~v~--~g~~viiDg~~G~vi 229 (574)
T COG1080 154 DEEVILVAEDLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAA-TLAVK--DGDTLILDGINGEVI 229 (574)
T ss_pred CCCeEEEECCCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHH-hhccc--CCCEEEEECCCCeEE
Confidence 467899884433000000 169999998776 78999999999999998777643 33333 899999988887777
Q ss_pred EEE
Q 002200 636 YSV 638 (954)
Q Consensus 636 i~~ 638 (954)
+.+
T Consensus 230 ~nP 232 (574)
T COG1080 230 VNP 232 (574)
T ss_pred ECc
Confidence 765
No 29
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=85.42 E-value=1.2 Score=55.93 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCCCCCCC----CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEEEeccCce
Q 002200 559 DRPTILLARRVKGEEEIP----DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 634 (954)
Q Consensus 559 ~~p~Ill~~~v~G~EeIp----~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l~vs~~~v 634 (954)
..|.|||++...- .+++ .+|+||+|..-. .-||.+++||++|||.+.=-+ .... ...|..|.+....+.+
T Consensus 320 ~~~~Ilva~~l~p-s~~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~v 393 (748)
T PRK11061 320 PERFILVADELTA-TLLAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGEL 393 (748)
T ss_pred CCCEEEEECCCCH-HHHHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCEE
Confidence 4577888866551 3333 279999998876 889999999999999754222 2222 2359999998877667
Q ss_pred EEEE
Q 002200 635 AYSV 638 (954)
Q Consensus 635 ~i~~ 638 (954)
.+.+
T Consensus 394 ~vnP 397 (748)
T PRK11061 394 LVDP 397 (748)
T ss_pred EeCC
Confidence 6765
No 30
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=83.60 E-value=2.3 Score=51.52 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=53.1
Q ss_pred cCCCCCCeEEEEecCCCCC--CCC-CCcEEEEcCCCCCcchhhhhhcccCCcceEEe-cChhhhHHhhhcCCCeEEEEec
Q 002200 555 DKSYDRPTILLARRVKGEE--EIP-DGTVAVLTADMPDVLSHVSVRARNCKVCFATC-FDPNILADLQSNEGKMLHLKPT 630 (954)
Q Consensus 555 ~~~~~~p~Ill~~~v~G~E--eIp-~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~-~d~~~~~~l~~l~Gk~V~l~vs 630 (954)
...+.++.|+|++..+--+ |.| +..+||+..+-. .-||++|.||.+|||.+-= -+- .....+|..+-+.--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~a~~i----~~~~~n~~~~IVDG~ 397 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMGAAGI----VPSVLNGDALIVDGY 397 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceeccccCc----chhhhcCCcEEEECC
Confidence 3456678899998765322 455 479999998765 7899999999999998754 331 123356666555444
Q ss_pred cCceEEEE
Q 002200 631 SADIAYSV 638 (954)
Q Consensus 631 ~~~v~i~~ 638 (954)
...+-+++
T Consensus 398 ~gev~l~P 405 (756)
T COG3605 398 RGEVHLRP 405 (756)
T ss_pred cceEEeCC
Confidence 44455544
No 31
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=82.74 E-value=1.9 Score=39.94 Aligned_cols=35 Identities=31% Similarity=0.773 Sum_probs=25.7
Q ss_pred EEEEEecccccccceEEEecC-CceeecCCCceEEEc
Q 002200 30 SIEIEIEEEGYVGMPFVLQSG-GNWIKNKGSDFYVDF 65 (954)
Q Consensus 30 ~~~~~~~~~~~~g~~~v~~~~-~~w~~~~~~d~~~~~ 65 (954)
+.+|++|++.. .|.||+++| +.|=+|+|.||++++
T Consensus 51 ~~tv~vP~~a~-~~dfvF~dg~~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 51 KATVDVPEDAY-VMDFVFNDGAGNWDNNNGANYHFPV 86 (87)
T ss_dssp EEEEE--TTTS-EEEEEEE-SSS-EESTTTS-EEEES
T ss_pred EEEEEEcCCce-EEEEEEcCCCCcEeCCCCccEEEEc
Confidence 37888888877 599999987 699999999999986
No 32
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=65.62 E-value=3 Score=52.49 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=78.8
Q ss_pred chhhccccHHHHhhchhHHHHHHHHhhhHHHHHHcCCCCceEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCC
Q 002200 493 KWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGE 572 (954)
Q Consensus 493 ~~~v~~FtEe~IRas~~f~lS~ll~~L~~~lr~~a~~~~wqvlspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~ 572 (954)
+|.++- .+-.+|+.+.-..+.+-...++ ...-..++. .+||.+.|.++++.+..+. ......+||+......
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~p- 376 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDP- 376 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCH-
Confidence 455554 5667788887666666555555 111112222 8999999999998887665 2223467888876652
Q ss_pred CCCC-C-CcEEEEcCCCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEE
Q 002200 573 EEIP-D-GTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHL 627 (954)
Q Consensus 573 EeIp-~-~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l 627 (954)
+.+| + .-.||+|..-. ..||-+|.||.+|+|-+.=-......-....+|..+.+
T Consensus 377 d~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~~~~~~~~~~~~~~~i~~~ 432 (740)
T COG0574 377 DWVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGTGSATKILKTLKDGTIVTL 432 (740)
T ss_pred HHhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcCchhhhhhhhcccceEEEe
Confidence 4444 2 45577776666 99999999999999986544433231112234544444
No 33
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=50.58 E-value=30 Score=37.08 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=37.8
Q ss_pred CcccCcccchHHHHHHHHHHHHHHHHHhC--CceeEEEEEE--CCEEEEEeecc
Q 002200 903 DRLITDGHFQQSILSSIARAGCEIEELFG--SAQDIEGVVR--DGKIYVVQTRP 952 (954)
Q Consensus 903 ~plLtD~~~r~~ll~~La~la~~IE~~fG--~PQDIEwai~--~g~LyILQaRP 952 (954)
.+.|+++. .++|.+.+.+|-+.+| .+--|||+++ ++++|++...|
T Consensus 130 ~~~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNp 178 (211)
T PF02786_consen 130 AQTLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNP 178 (211)
T ss_dssp -SSS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEES
T ss_pred ccccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccC
Confidence 35666664 6999999999999988 5999999999 79999999988
No 34
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=42.38 E-value=31 Score=37.95 Aligned_cols=25 Identities=24% Similarity=0.619 Sum_probs=22.6
Q ss_pred ChhhHHHHHhhC-CCChHhhhcCCCcc
Q 002200 244 DISAYWKTLNDN-GITKERLLSYDRAI 269 (954)
Q Consensus 244 ~~~~yw~~l~~~-g~t~e~l~s~dr~i 269 (954)
|.-++|..+-+. |+|+|++.|++ |.
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-pl 117 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-PL 117 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-CC
Confidence 677899999999 99999999998 54
No 35
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.81 E-value=1e+02 Score=34.05 Aligned_cols=87 Identities=20% Similarity=0.374 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHhcCC---------CCcc---------hHHHH
Q 002200 156 DRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQ-RIRDEILVIQRNNN---------CKGG---------MMEEW 216 (954)
Q Consensus 156 ~~~t~~~~~~~~~~~~~r~~~R~~l~t~~rgg~g~~gq-~iRd~IL~i~r~n~---------~kg~---------~~e~W 216 (954)
+|+++.+...-.+.|+...+++.++.=- +.|+...|+ ++..-|=.+.-+.+ +.|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6888888877788999999999888766 777777887 55544433332211 1222 67788
Q ss_pred HhhhcCCCCCchHHHHHHHHHHHhhCCChh
Q 002200 217 HQKLHNNTSPDDVIICQALIDYIKSDFDIS 246 (954)
Q Consensus 217 HQkLhnnttpddv~ICea~l~~l~s~~~~~ 246 (954)
-+| ...+-.|..|++|.|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 566667999999999999988 544
No 36
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=34.20 E-value=37 Score=37.43 Aligned_cols=43 Identities=33% Similarity=0.500 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHccCchhHHHHHHHHhhccCCCCCCCchhh
Q 002200 151 ISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRI 195 (954)
Q Consensus 151 ~~~~q~~~t~~~~~~~~~~~~~r~~~R~~l~t~~rgg~g~~gq~i 195 (954)
+++-|..|...||+.+..+-..++..|--..||||||+ .|.+|
T Consensus 95 lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~ 137 (313)
T KOG3021|consen 95 LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQI 137 (313)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--ccccc
Confidence 45667899999999999999999988888999999998 55554
No 37
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=25.14 E-value=5e+02 Score=35.94 Aligned_cols=138 Identities=21% Similarity=0.190 Sum_probs=80.4
Q ss_pred CCchhhhHHHHHHHHHH---HHHHHhhchhhhcCChhhHHHHHHHHHhhhccCCCCcHH-----HHHHHHHHHhhhhcCC
Q 002200 375 DRLKDLLFLDIALESSV---RTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNED-----LIYCLKGWSNALSMSK 446 (954)
Q Consensus 375 ~~~rd~~~lD~ale~~~---r~~~e~~~~~~~~~~~~~~~~~l~l~l~nl~ls~~~n~e-----l~~~l~~W~~~~~~~~ 446 (954)
+.|-.|-|=|++=..++ |+.+|..+-.+.. ++||++-+++-+||||.+-.|.|.- ++-....-.-+..
T Consensus 373 MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s-~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~--- 448 (2195)
T KOG2122|consen 373 MALTNLTFGDVANKATLCSQRGFMEAVVAQLIS-APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR--- 448 (2195)
T ss_pred HHhhccccccccchhhhhhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH---
Confidence 33444556666633332 6667777666654 4899999999999999999987762 2221111111111
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhHHHHHH--hhcchHHHHhhhcCcc--chhhccccHHHHhhchhHHHHHHHHhhhHH
Q 002200 447 SKSDNWALFAKSVLDRTRLALASKADWYQK--VLQPSAEYLGTLLSVD--KWAVDIFTEEMIRAGSAAALSLLLNRLDPV 522 (954)
Q Consensus 447 ~~~~~wAl~~kA~ldR~r~~~~~~~d~~~~--~~q~~a~~lG~~lg~e--~~~v~~FtEe~IRas~~f~lS~ll~~L~~~ 522 (954)
.. ++ -.|||+|--.=.+-+..++.=.. ..+..-.+|-+.|.++ -+...+.-- =++++-.+|.++..=.++
T Consensus 449 ~~-kE--sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEs---aGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 449 NK-KE--STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIES---AGGILRNVSSLIATCEDY 522 (2195)
T ss_pred hc-cc--chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhc---CccHHHHHHhHhhccchH
Confidence 11 11 24788888777666654443333 2456667888888888 444432211 245666777776555444
No 38
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=24.26 E-value=65 Score=26.36 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.5
Q ss_pred CCCCchHHHHHHHHHHHhhC
Q 002200 223 NTSPDDVIICQALIDYIKSD 242 (954)
Q Consensus 223 nttpddv~ICea~l~~l~s~ 242 (954)
.-|+||-.||.++.+|-.+.
T Consensus 14 GdteddT~v~r~l~~yY~~k 33 (41)
T PF14475_consen 14 GDTEDDTHVHRVLRKYYTEK 33 (41)
T ss_pred CCCcchhHHHHHHHHHHHHc
Confidence 46899999999999998765
No 39
>PLN02316 synthase/transferase
Probab=20.48 E-value=1.3e+02 Score=39.87 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=31.9
Q ss_pred EEEEecccccccceEEEecCC-ceeecCCCceEEEcccc
Q 002200 31 IEIEIEEEGYVGMPFVLQSGG-NWIKNKGSDFYVDFSYE 68 (954)
Q Consensus 31 ~~~~~~~~~~~g~~~v~~~~~-~w~~~~~~d~~~~~~~~ 68 (954)
.++.+|+..++ |-||+-+|+ .|=||++.||++++...
T Consensus 203 ~~v~Vp~~A~~-ldfVf~~g~~~yDNN~~~Df~~~V~~~ 240 (1036)
T PLN02316 203 CKLHIPKEAYK-MDFVFFNGQNVYDNNDHKDFCVEIEGG 240 (1036)
T ss_pred EEEecCccceE-EEEEEeCCccccccCCCCceEEEeCCC
Confidence 67888888888 999999885 59999999999999753
Done!