Query 002200
Match_columns 954
No_of_seqs 208 out of 1457
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ols_A Phosphoenolpyruvate syn 100.0 1.1E-41 3.7E-46 413.2 20.4 257 671-953 3-336 (794)
2 1vbg_A Pyruvate,orthophosphate 100.0 8.1E-34 2.8E-38 345.3 18.6 134 750-953 204-342 (876)
3 1kbl_A PPDK, pyruvate phosphat 100.0 2.3E-33 7.9E-38 341.3 18.1 133 750-953 200-338 (873)
4 1h6z_A Pyruvate phosphate diki 100.0 2E-33 6.7E-38 341.2 15.2 156 750-953 206-367 (913)
5 2x0s_A Pyruvate phosphate diki 100.0 1.5E-31 5.3E-36 327.9 14.6 157 750-953 206-367 (913)
6 3t05_A Pyruvate kinase, PK; te 96.0 0.011 3.9E-07 70.0 8.4 91 535-631 503-595 (606)
7 2e28_A Pyruvate kinase, PK; al 95.4 0.0074 2.5E-07 71.5 3.9 97 533-635 482-580 (587)
8 2ols_A Phosphoenolpyruvate syn 95.2 0.007 2.4E-07 74.2 2.6 98 533-637 364-466 (794)
9 1h6z_A Pyruvate phosphate diki 94.6 0.027 9.3E-07 69.7 5.6 98 533-635 424-532 (913)
10 1vbg_A Pyruvate,orthophosphate 94.4 0.015 5E-07 71.9 2.7 100 534-638 400-512 (876)
11 1kbl_A PPDK, pyruvate phosphat 93.9 0.016 5.4E-07 71.6 1.5 99 534-637 396-507 (873)
12 1zym_A Enzyme I; phosphotransf 93.0 0.064 2.2E-06 57.4 4.3 74 559-638 153-231 (258)
13 2x0s_A Pyruvate phosphate diki 92.1 0.08 2.7E-06 65.9 4.0 72 534-610 425-501 (913)
14 2wqd_A Phosphoenolpyruvate-pro 89.5 0.28 9.7E-06 58.0 5.3 75 559-638 155-233 (572)
15 2hwg_A Phosphoenolpyruvate-pro 88.8 0.28 9.5E-06 58.1 4.6 74 559-638 153-231 (575)
16 2c3v_A Alpha-amylase G-6; carb 52.0 11 0.00038 34.9 3.7 35 30-66 52-87 (102)
17 2laa_A Beta/alpha-amylase; SBD 48.4 16 0.00055 34.0 4.2 35 30-66 47-82 (104)
18 2la2_A Cecropin, papiliocin; a 24.9 19 0.00065 27.6 0.5 11 191-201 11-21 (38)
19 3lpz_A GET4 (YOR164C homolog); 24.6 5E+02 0.017 28.6 12.0 150 85-247 18-205 (336)
20 3rrw_A Thylakoid lumenal 29 kD 20.4 91 0.0031 33.5 4.8 87 147-236 6-108 (268)
21 1xqo_A 8-oxoguanine DNA glycos 20.1 2E+02 0.0068 30.7 7.2 66 167-242 27-95 (256)
No 1
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=100.00 E-value=1.1e-41 Score=413.18 Aligned_cols=257 Identities=25% Similarity=0.355 Sum_probs=197.8
Q ss_pred CceeeeCCCCC---CCccCHHHHHHHHHHccCC-CcccCCCceecChhhhHHHHhhhhH-----H---------------
Q 002200 671 GRYAITSDEFT---GELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNIN-----Q--------------- 726 (954)
Q Consensus 671 ~~~vl~l~e~~---~~~VG~KAanLg~L~~~~p-~g~~VP~GfvIPfg~fe~~L~~~~~-----~--------------- 726 (954)
+++++++++.+ ..+||||++||++|.++++ .|++||+||+||+++|++|++.+.- .
T Consensus 3 ~~~v~~~~~~~~~~~~~vGGK~anL~em~~~L~~~GlpVP~GF~Itt~a~~~fl~~~~l~~~i~~~l~~l~~~~~~~l~~ 82 (794)
T 2ols_A 3 DNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHNGLSERISAALAKLDVEDVAELAR 82 (794)
T ss_dssp -CCEEEGGGCCGGGHHHHHHHHHHHHHHHHHHGGGTCCCCCEEEECHHHHHHHHTGGGHHHHHHHHHHSCCTTSHHHHHH
T ss_pred CCEEEECCcCChhhcccCCHHHHHHHHHHHHHhhCCCCCCCEEEECHHHHHHHHHhCChHHHHHHHHHhhcccCHHHHHH
Confidence 46889998874 5889999999999986433 5799999999999999999875310 0
Q ss_pred ------------------HHHHHHH----------------HHhcCCCCCCCC------Cc-------ccHHHHHHHHHH
Q 002200 727 ------------------VQELKTE----------------MKSSGMPWPGDE------GE-------QRWEQAWMAIKK 759 (954)
Q Consensus 727 ------------------lqeL~~A----------------vRSS~~~~aeD~------g~-------~~~e~l~~AIk~ 759 (954)
.++|.++ ||||+ .+||. |+ .++++++.|||+
T Consensus 83 ~~~~ir~~I~~~~~p~~l~~~i~~a~~~l~~~~g~~~~~vaVRSSa--~~EDl~~~sfAG~~~t~l~v~g~~~l~~Aik~ 160 (794)
T 2ols_A 83 VGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSA--TAEDLPDASFAGQQETFLNINGLDNVKEAMHH 160 (794)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTSSCCCCEEEEEEE--CC-------CCSCSCEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccccccCceEEEecCC--ChhhhhhhhhhhhhhhhhcCCCHHHHHHHHHH
Confidence 1122111 23444 34552 22 258999999999
Q ss_pred HHHhcCChhhHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEecCCCCCCCCceeeeecccccccccccccCcceeE
Q 002200 760 VWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSF 837 (954)
Q Consensus 760 VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVl~T~nP~tgd~~~i~IEa~~GLGEtLVsG~~Gtpd~f 837 (954)
||||+||+||+.||+.+|++++++.|||+||+||.++ +|||+||+||.+|+++.++|+++|||||.||+|.+ +|+.|
T Consensus 161 v~aS~~s~RAi~YR~~~gi~~~~~~mAV~VQ~MV~~~~s~sGV~FT~dP~tG~~~~~~I~a~~GlGE~vV~G~~-tpd~~ 239 (794)
T 2ols_A 161 VFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAV-NPDEF 239 (794)
T ss_dssp HHHHTTCHHHHHHHHHHCC--CCCCEEEEEEECCCTTSSEEEEEESSCTTTCCCSEEEEEEEESCTHHHHHTSS-CCEEE
T ss_pred HHHhcCCHHHHHHHHHcCCChHHhCceEEEEEcccCCceeEEEEEeCCCCCCCCceEEEEeccCCCceeecCCc-CCcEE
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999997 89999
Q ss_pred EEeccCCC--CccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCcccCcccchHHH
Q 002200 838 VCKKNDLK--YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSI 915 (954)
Q Consensus 838 ~v~k~~~~--~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~plLtD~~~r~~l 915 (954)
.++|++.. ...+. ++.++.| ...+++.. +++ .+|.+..+++++..+ ..++|+|++
T Consensus 240 ~v~kp~l~~~~~~i~---~~~~~~k-~~~~~~~~--~~~------~g~~~~~~~~p~~~~------~~~~L~d~~----- 296 (794)
T 2ols_A 240 YVFKPTLKAGKPAIL---RKTMGSK-HIKMIFTD--KAE------AGKSVTNVDVPEEDR------NRFSITDEE----- 296 (794)
T ss_dssp EEEHHHHHTTSCCEE---EEECCCC-CEEEEECS--CCS------SSTTEEEEECCHHHH------TSCSSCHHH-----
T ss_pred EEeccccccCCccee---eeecccc-ceeEEecc--ccc------CCCeeEEEeCCHHHh------cCCCCCHHH-----
Confidence 99983210 01232 3344444 23444432 111 223345677776543 689999997
Q ss_pred HHHHHHHHHHHHHHhCCceeEEEEEECC--EEEEEeeccC
Q 002200 916 LSSIARAGCEIEELFGSAQDIEGVVRDG--KIYVVQTRPQ 953 (954)
Q Consensus 916 l~~La~la~~IE~~fG~PQDIEwai~~g--~LyILQaRP~ 953 (954)
+.+|++++..||++||.||||||+++++ +|||||+||+
T Consensus 297 ~~~L~~~~~~lE~~yg~pqDIEwai~~~~g~L~iLQaRP~ 336 (794)
T 2ols_A 297 ITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPE 336 (794)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEECCCCeEEEEEecCc
Confidence 6999999999999999999999999976 9999999996
No 2
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=100.00 E-value=8.1e-34 Score=345.30 Aligned_cols=134 Identities=20% Similarity=0.192 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCCcccccceeEEEEeeccC-----eeEEEEecCCCCCCCCceeeeecccccc
Q 002200 750 WEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-----YAFVIHTTNPSSGDSSEIYAEVVKGLGE 824 (954)
Q Consensus 750 ~e~l~~AIk~VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVl~T~nP~tgd~~~i~IEa~~GLGE 824 (954)
+++++.|||+||||+||+||+.||+.+|++++ .+|||+||+||.++ .|||+||+||.+|+++.+-..++.|+||
T Consensus 204 ~~qL~~Ai~~v~aS~~~~RAi~YR~~~gi~~~-~~~AV~VQ~MV~g~~g~~s~sGV~FT~nP~tG~~~~~g~~li~a~GE 282 (876)
T 1vbg_A 204 KKQLELAVLAVFNSWESPRAKKYRSINQITGL-RGTAVNVQCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGE 282 (876)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTTTCCCC-CCCCEEEEECCCSCSSTTCEEEEEESSCTTTCCSSCEEEEEESSCHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHhcCCCch-hCceEEEEEeccCCCCCCeeEEEEEeCCCCCCCcccceEEEEecCch
Confidence 58999999999999999999999999999998 79999999999886 8999999999999986333335778999
Q ss_pred cccccccCcceeEEEeccCCCCccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCc
Q 002200 825 TLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDR 904 (954)
Q Consensus 825 tLVsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~p 904 (954)
.||+|.+ +|+.|.+ + .+
T Consensus 283 ~VVsG~~-tPd~~~~----------l------------------------------------------~~---------- 299 (876)
T 1vbg_A 283 DVVAGIR-TPEDLDA----------M------------------------------------------KN---------- 299 (876)
T ss_dssp HHHHTSC-CCEETHH----------H------------------------------------------HH----------
T ss_pred hhhcCCc-Ccchhhh----------h------------------------------------------cc----------
Confidence 9999987 6763211 0 00
Q ss_pred ccCcccchHHHHHHHHHHHHHHHHHhCCceeEEEEEECCEEEEEeeccC
Q 002200 905 LITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 953 (954)
Q Consensus 905 lLtD~~~r~~ll~~La~la~~IE~~fG~PQDIEwai~~g~LyILQaRP~ 953 (954)
+.++ .+.+|++++..||++||.||||||++++|+|||||+||+
T Consensus 300 -~~p~-----~~~~L~~~~~~lE~hy~~pqDIEfti~~g~L~iLQ~Rp~ 342 (876)
T 1vbg_A 300 -LMPQ-----AYDELVENCNILESHYKEMQDIEFTVQENRLWMLQCRTG 342 (876)
T ss_dssp -HCHH-----HHHHHHHHHHHHHHHHCSCEEEEEEEETTEEEEEEEEEC
T ss_pred -cCHH-----HHHHHHHHHHHHHHHcCCCeEEEEEEECCEEEEEEeccc
Confidence 0112 368999999999999999999999999999999999996
No 3
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=100.00 E-value=2.3e-33 Score=341.26 Aligned_cols=133 Identities=28% Similarity=0.354 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCCcccccceeEEEEeeccC-----eeEEEEecCCCCCCCCceeee-eccccc
Q 002200 750 WEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-----YAFVIHTTNPSSGDSSEIYAE-VVKGLG 823 (954)
Q Consensus 750 ~e~l~~AIk~VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVl~T~nP~tgd~~~i~IE-a~~GLG 823 (954)
+++++.|||+||||+||+||+.||+.+|++++ .+|||+||+||.++ .|||+||+||.+|+++ ++.+ ++.|+|
T Consensus 200 ~eqL~~Aik~V~aS~~~~RAi~YR~~~gi~~~-~~~AV~VQ~MV~g~~~~~s~sGV~FT~nP~tG~~~-~~g~~li~a~G 277 (873)
T 1kbl_A 200 KDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGD-WGTAVNVQTMVFGNKGETSGTGVAFTRNPSTGEKG-IYGEYLINAQG 277 (873)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCCGG-GCCEEEEEECCCTTSSTTCEEEEEEEECTTTCCEE-EEEEEEESCCH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHcCCCch-hCceEEEEEcccCCCCCceeEEEEEecCCCCCCcc-cceEEEecCCc
Confidence 68999999999999999999999999999997 79999999999886 8999999999999875 4433 477899
Q ss_pred ccccccccCcceeEEEeccCCCCccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCC
Q 002200 824 ETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSD 903 (954)
Q Consensus 824 EtLVsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~ 903 (954)
|.||+|.+ +|+.|.+ + . .
T Consensus 278 E~VV~G~~-tPd~~~~----------l----------------------------------------~--~--------- 295 (873)
T 1kbl_A 278 EDVVAGVR-TPQPITQ----------L----------------------------------------E--N--------- 295 (873)
T ss_dssp HHHHHTSS-CCEEGGG----------H----------------------------------------H--H---------
T ss_pred hhhhcCCc-Cchhhhh----------h----------------------------------------c--c---------
Confidence 99999886 6663210 0 0 0
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHhCCceeEEEEEECCEEEEEeeccC
Q 002200 904 RLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 953 (954)
Q Consensus 904 plLtD~~~r~~ll~~La~la~~IE~~fG~PQDIEwai~~g~LyILQaRP~ 953 (954)
+.+ ..+++|++++..||++||.||||||++++|+|||||+||.
T Consensus 296 --~~p-----~~~~~L~~~~~~lE~hy~~pqDIEfti~~g~L~iLQtRp~ 338 (873)
T 1kbl_A 296 --DMP-----DCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRNG 338 (873)
T ss_dssp --HCH-----HHHHHHHHHHHHHHHHHTSCEEEEEEEETTEEEEEEEEEC
T ss_pred --cCH-----HHHHHHHHHHHHHHHHcCCCeEEEEEEECCEEEEEEeccc
Confidence 011 2368999999999999999999999999999999999996
No 4
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=100.00 E-value=2e-33 Score=341.23 Aligned_cols=156 Identities=24% Similarity=0.216 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCCcccccceeEEEEeeccC-----eeEEEEecCCCCCCCCceeeee-ccccc
Q 002200 750 WEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-----YAFVIHTTNPSSGDSSEIYAEV-VKGLG 823 (954)
Q Consensus 750 ~e~l~~AIk~VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVl~T~nP~tgd~~~i~IEa-~~GLG 823 (954)
+++++.||++||||+||+||+.||+.+|++++ ..|||+||+||.++ .|||+||+||.||++. +++|+ +.|+|
T Consensus 206 ~eqL~~AI~~v~aS~~s~RAi~YR~~~gi~~~-~~mAV~VQ~MV~g~~~~~s~SGV~FT~dP~TG~~~-~~ge~li~alG 283 (913)
T 1h6z_A 206 VMQLFAAIKAVFRSWGNPRATIYRRMNNITGL-LGTAVNVQAMVFGNINDRSATGVAFSRSPSTGENF-FFGEYLVNAQG 283 (913)
T ss_dssp HHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSC-CCCCEEEEECCCSCSSTTCEEEEEESSCSSSCCSS-CEEEEEESCCT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHcCCChh-hcceEEEEEEeccCCCCcceeEEEEeCCCCCCCcc-eeeEEEEecCC
Confidence 68999999999999999999999999999985 79999999999875 7999999999999864 54443 44699
Q ss_pred ccccccccCcceeEEEeccCCCCccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCC
Q 002200 824 ETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSD 903 (954)
Q Consensus 824 EtLVsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~ 903 (954)
|.||+|.+ +|+.|++++.. .+. .+.+..+ .....+ -+..
T Consensus 284 E~VVsG~v-tPd~~~v~~~~----~~~---~~~i~~~--------------------------------~~~~~~-~~~l 322 (913)
T 1h6z_A 284 EDVVAGIR-TPQQINHSLSL----RWA---KAHGVGE--------------------------------EERRKR-YPSM 322 (913)
T ss_dssp THHHHCCS-CCEESSHHHHH----HHH---TTSSCCH--------------------------------HHHHHH-SCCH
T ss_pred chhccCCc-cCeEEEEeccc----chh---hcccchh--------------------------------hhcccC-chhh
Confidence 99999998 89988776531 010 1101000 000000 0012
Q ss_pred cccCcccchHHHHHHHHHHHHHHHHHhCCceeEEEEEECCEEEEEeeccC
Q 002200 904 RLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 953 (954)
Q Consensus 904 plLtD~~~r~~ll~~La~la~~IE~~fG~PQDIEwai~~g~LyILQaRP~ 953 (954)
+.++++ .+.+|++++.+||++||.||||||++++|+|||||+||.
T Consensus 323 ~~l~p~-----~~~eLa~~a~~lE~hyg~pqDIEwai~~G~LyILQaRP~ 367 (913)
T 1h6z_A 323 EEAMPE-----NYRLLCDVRKRLENHYRDMQDLEFTVQDGRLWLLQCRNG 367 (913)
T ss_dssp HHHSHH-----HHHHHHHHHHHHHHHHTSCEEEEEEEETTEEEEEEEEEC
T ss_pred hhcCHH-----HHHHHHHHHHHHHHHhCCCceEEEEEECCEEEEEEecCc
Confidence 233444 479999999999999999999999999999999999995
No 5
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=99.97 E-value=1.5e-31 Score=327.91 Aligned_cols=157 Identities=22% Similarity=0.206 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCCCcccccceeEEEEeeccC-----eeEEEEecCCCCCCCCceeeeecccccc
Q 002200 750 WEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD-----YAFVIHTTNPSSGDSSEIYAEVVKGLGE 824 (954)
Q Consensus 750 ~e~l~~AIk~VWASlys~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVl~T~nP~tgd~~~i~IEa~~GLGE 824 (954)
+++++.|||.||||+||+||+.||+.+|+++. +.+||.||.||.++ .|||+||+||.||++..+.+.+++||||
T Consensus 206 ~~qL~~ai~~vfaSl~t~RAi~YR~~~g~~~~-~~laV~VQ~MV~~~~~~~s~SGVmFT~dp~TG~~~~~~~~~~~glGE 284 (913)
T 2x0s_A 206 VMQLFAAIKAVFRSWGNPRATIYRRMNNITGL-LGTAVNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGE 284 (913)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTHHHHSCCCCC-CCCEEEEEECCCSCSSTTCEEEEEESSCTTTCCSSCEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHhcCCCcc-cccceEEEEeeecccCccccceEEEecCCCCCCCcEEEEEccCCcCc
Confidence 57999999999999999999999999999985 89999999999876 6899999999999998899999999999
Q ss_pred cccccccCcceeEEEeccCCCCccccCCCCcccccccceeEEEecCCCCCccccccCCCccccccCchhhHhhhcccCCc
Q 002200 825 TLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDR 904 (954)
Q Consensus 825 tLVsG~~Gtpd~f~v~k~~~~~~~Vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdys~~p 904 (954)
.||+|.+ +|+.|+.++... .+ ..+.++.+ .. ...|..
T Consensus 285 ~VV~G~v-tPd~~~~~~~~~---~~---~~~~~~~k--------------------------------~~--~~~~~~-- 321 (913)
T 2x0s_A 285 DVVAGIR-TPQQINHSLSLR---WA---KAHGVGEE--------------------------------ER--RKRYPS-- 321 (913)
T ss_dssp HHHHCSS-CCBCSSHHHHHH---HH---HTTTCCHH--------------------------------HH--HHHSCC--
T ss_pred ccccCCC-CCcccccchhhh---hh---hhcccccc--------------------------------cc--cccccc--
Confidence 9999998 898764332110 00 01111110 00 000111
Q ss_pred ccCcccchHHHHHHHHHHHHHHHHHhCCceeEEEEEECCEEEEEeeccC
Q 002200 905 LITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 953 (954)
Q Consensus 905 lLtD~~~r~~ll~~La~la~~IE~~fG~PQDIEwai~~g~LyILQaRP~ 953 (954)
.++..++..+.|++++..||+||+.||||||++++|+||+||+||.
T Consensus 322 ---~~~~~p~~~~~l~~~~~~lE~hy~~~qdiE~a~~~g~l~ilq~R~~ 367 (913)
T 2x0s_A 322 ---MEEAMPENYRLLCDVRKRLENHYRDMQDLEFTVQDGRLWLLQCRNG 367 (913)
T ss_dssp ---HHHHSHHHHHHHHHHHHHHHHHHSSCEEEEEEEETTEEEEEEEEEC
T ss_pred ---hhhhhHHHHHHHHHHHHHHHHhcCcHHHhHHHhcCCchHHHHhhhc
Confidence 1111233568899999999999999999999999999999999973
No 6
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=95.98 E-value=0.011 Score=70.04 Aligned_cols=91 Identities=8% Similarity=0.163 Sum_probs=67.0
Q ss_pred eeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecChh
Q 002200 535 ISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPN 612 (954)
Q Consensus 535 lspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~ 612 (954)
++||.+.|+++++.+.++.. ..+..+.|||++..+- ++++ ..+.||||..-. ..||.++.||++|||-+.--..
T Consensus 503 i~~G~v~G~v~vv~~~~da~-~~~~~g~ILVa~~l~P-s~~~~l~~v~GiVte~Gg-~tSHaAIlAR~lgIPaVvG~~~- 578 (606)
T 3t05_A 503 IGRGSVVGTTLVAETVKDLE-GKDLSDKVIVTNSIDE-TFVPYVEKALGLITEENG-ITSPSAIVGLEKGIPTVVGVEK- 578 (606)
T ss_dssp ESSCEEEEEEEECSSGGGGS-SSCCSSEEEEESCCCT-TTHHHHTTSSEEEESSCC-SSSHHHHHHHHTTCCEEECCTT-
T ss_pred cccceEEEEEEEECChHHHh-hcCCCCeEEEECCCCH-HHHHHHHhhEEEEecCCC-cccHHHHHHhhCCCCEEEeccc-
Confidence 68889999999999876632 2345688999987762 3333 479999998877 8999999999999997654332
Q ss_pred hhHHhhhcCCCeEEEEecc
Q 002200 613 ILADLQSNEGKMLHLKPTS 631 (954)
Q Consensus 613 ~~~~l~~l~Gk~V~l~vs~ 631 (954)
.... -.+|+.|.+....
T Consensus 579 a~~~--l~~G~~V~vDg~~ 595 (606)
T 3t05_A 579 AVKN--ISNNVLVTIDAAQ 595 (606)
T ss_dssp HHHH--SCSSCEEEEETTT
T ss_pred HHhh--CCCCCEEEEECCC
Confidence 2222 2489988886654
No 7
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=95.43 E-value=0.0074 Score=71.52 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=68.8
Q ss_pred eEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecC
Q 002200 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 610 (954)
Q Consensus 533 qvlspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d 610 (954)
..++||.+.|+++++.+.++... ....|.||+++..+= +++| ..+.||||..-. ..||.+++||++|||-+.--.
T Consensus 482 ~~~~~g~~~G~v~v~~~~~~~~~-~~~~g~ILVa~~l~P-s~~~~l~~~~Givt~~Gg-~tSHaAIlAR~lgIPaVvG~~ 558 (587)
T 2e28_A 482 QGIGRKSAFGKAVVAKTAEEARQ-KMVDGGILVTVSTDA-DMMPAIEKAAAIITEEGG-LTSHAAVVGLSLGIPVIVGVE 558 (587)
T ss_dssp EEESSCEECCBEEECSSHHHHHH-HCCTTCEEEESCCCG-GGHHHHTTCSEEEESSCC-TTSHHHHHHHHHTCCEEECCT
T ss_pred ccccCCeEEeeEEEeCCHHHHhh-cCCCCeEEEECCCCH-HHHHHHHhcEEEEEcCCC-CcCHHHHHHHHcCCCEEEecc
Confidence 44789999999999987654211 235688999987761 2333 489999998776 899999999999999765332
Q ss_pred hhhhHHhhhcCCCeEEEEeccCceE
Q 002200 611 PNILADLQSNEGKMLHLKPTSADIA 635 (954)
Q Consensus 611 ~~~~~~l~~l~Gk~V~l~vs~~~v~ 635 (954)
+....+ .+|+.|.+......+.
T Consensus 559 -~~~~~l--~~G~~v~vDg~~G~V~ 580 (587)
T 2e28_A 559 -NATTLF--KDGQEITVDGGFGAVY 580 (587)
T ss_dssp -THHHHS--CTTCBEEEETTTTEEE
T ss_pred -cHHHhC--CCCCEEEEECCCCEEE
Confidence 233333 4699998876554333
No 8
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=95.16 E-value=0.007 Score=74.22 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=56.4
Q ss_pred eEeeeeEEEEEEEEeccccccccCCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEEecC
Q 002200 533 QVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFATCFD 610 (954)
Q Consensus 533 qvlspG~A~G~L~~V~~l~~v~~~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d 610 (954)
..++||.+.|++++|.+.++.. ....+.|||++..+ -+++| ..+.||||..-. ..||.+|.||++|||-+.--.
T Consensus 364 ~~~~~g~~~G~v~~~~~~~~~~--~~~~g~ILv~~~~~-p~~~~~~~~~~givt~~Gg-~tSHaAivar~~giP~vvg~~ 439 (794)
T 2ols_A 364 RAIGQKVGQGKVRLIKDASEMD--SVEAGDVLVTDMTD-PDWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVGCG 439 (794)
T ss_dssp BC--CCCCCBCBC----------------CEEEESCCC-GGGSHHHHTCSEEEESSCC-TTCHHHHHTTC---CEEECCT
T ss_pred cccCCCcceEEEEEecCHHHHH--hcCCCeEEEECCCC-HHHHHHHhhCcEEEEcCCC-cccHHHHHHhHCCCCEEEcCc
Confidence 3468999999998887766532 23456799998875 25555 489999998766 899999999999999765332
Q ss_pred hhhhHHhhhcCCCeEEE---EeccCceEEE
Q 002200 611 PNILADLQSNEGKMLHL---KPTSADIAYS 637 (954)
Q Consensus 611 ~~~~~~l~~l~Gk~V~l---~vs~~~v~i~ 637 (954)
. ....+ .+|+.|.+ ..+...|...
T Consensus 440 ~-~~~~~--~~G~~v~v~c~Dg~~G~v~~g 466 (794)
T 2ols_A 440 N-ATELL--KNGQEVTVSCAEGDTGFIYAG 466 (794)
T ss_dssp T-HHHHS--CSSCCEECCCC--CCCBCEEC
T ss_pred c-hhhcc--cCCCEEEEEecCCCcceEEeC
Confidence 1 23322 46999998 6655445443
No 9
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=94.56 E-value=0.027 Score=69.69 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=63.8
Q ss_pred eEeeeeEEEEEEEEeccccccccC-CCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEE-e
Q 002200 533 QVISPVEVFGYVAVVDELLAVQDK-SYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFAT-C 608 (954)
Q Consensus 533 qvlspG~A~G~L~~V~~l~~v~~~-~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~-~ 608 (954)
...+||.|.|++++ ..++.... ...+|.|||.+..+ -++++ ..+.||||..-. ..||.+|.||++|||-+. |
T Consensus 424 ~~aspG~a~G~v~~--~~~~a~~~~~~ge~~ILV~~~t~-P~d~~~m~~a~GIvT~~GG-~TSHaAIvAR~lGiPaVvG~ 499 (913)
T 1h6z_A 424 LAASPGAAVGQVVF--DAESAKEWSGRGKKVIMVRLETS-PEDLAGMDAACGILTARGG-MTSHAAVVARGMGKCCVSGC 499 (913)
T ss_dssp EEEESCEEEEEEES--SHHHHHSTTTTSCCEEEEESSCC-GGGCTTTTTSSEEEESSCC-TTCHHHHHHHHTTCCEEECC
T ss_pred eecCCceEEEEEEE--CHHHHHHHHhcCCCEEEEECCCC-HHHHHhHHhceEEEEcCCC-cccHHHHHHHhcCCCEEECC
Confidence 34799999999764 22222211 22457799987765 35666 378999998877 889999999999999765 5
Q ss_pred cChhhhH-------HhhhcCCCeEEEEeccCceE
Q 002200 609 FDPNILA-------DLQSNEGKMLHLKPTSADIA 635 (954)
Q Consensus 609 ~d~~~~~-------~l~~l~Gk~V~l~vs~~~v~ 635 (954)
.+.. ++ .-.-.+|..|.+..+...|.
T Consensus 500 ~~~~-~d~~~~~~~~~~l~~Gd~VtvDG~~G~V~ 532 (913)
T 1h6z_A 500 GDMV-IRGKSFKLNGSVFREGDYITIDGSKGLIY 532 (913)
T ss_dssp TTCE-ESSSCEEETTEEESSCEEEEETTSEEESC
T ss_pred cccc-cccceeccCceEecCCCEEEEECCCCEEE
Confidence 5431 11 11224677777755443333
No 10
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=94.36 E-value=0.015 Score=71.93 Aligned_cols=100 Identities=22% Similarity=0.319 Sum_probs=65.7
Q ss_pred EeeeeEEEEEEEEecccccccc-CCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEE-ec
Q 002200 534 VISPVEVFGYVAVVDELLAVQD-KSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFAT-CF 609 (954)
Q Consensus 534 vlspG~A~G~L~~V~~l~~v~~-~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~-~~ 609 (954)
..+||.+.|++++ ..++... ....+|.|||.+..+ -+++| ..+.||||..-. ..||.+|.||++|||-+. |.
T Consensus 400 ~as~G~a~G~vv~--~~~~~~~~~~~g~~~ILV~~~t~-P~~~~~~~~a~GivT~~GG-~tSHaAIvAR~lGiP~VvG~~ 475 (876)
T 1vbg_A 400 PASPGAAVGQVVF--TAEDAEAWHSQGKAAILVRAETS-PEDVGGMHAAVGILTERGG-MTSHAAVVARGWGKCCVSGCS 475 (876)
T ss_dssp EEECSEEEEEEES--SHHHHHHHHHTTCCEEEEESCCC-TTSHHHHHHSSEEEESSCC-TTSHHHHHHHHTTCCEEECCT
T ss_pred ccCCCeEEEEEEE--CHHHHHHHhhccCCEEEEEcCCC-HHHHHhHhhccEEEECCCC-CccHHHHHHhHcCCCEEEcCC
Confidence 4699999999754 2222111 112467899998766 34455 258899998776 899999999999999865 55
Q ss_pred ChhhhH--------Hhh-hcCCCeEEEEeccCceEEEE
Q 002200 610 DPNILA--------DLQ-SNEGKMLHLKPTSADIAYSV 638 (954)
Q Consensus 610 d~~~~~--------~l~-~l~Gk~V~l~vs~~~v~i~~ 638 (954)
+.. ++ ... -.+|..|.+.-+...|.+.+
T Consensus 476 ~~~-~~~~~~~~~~~~~~l~~G~~vtvDG~~G~V~~g~ 512 (876)
T 1vbg_A 476 GIR-VNDAEKLVTIGGHVLREGEWLSLNGSTGEVILGK 512 (876)
T ss_dssp TEE-EEGGGTEEEETTEEEETTCEEEEETTTTEEEESC
T ss_pred Cce-eccccceEEeCCeeecCCCEEEEECCCCEEEECC
Confidence 421 11 011 24799998877665555543
No 11
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=93.85 E-value=0.016 Score=71.65 Aligned_cols=99 Identities=21% Similarity=0.256 Sum_probs=64.9
Q ss_pred EeeeeEEEEEEEEecccccccc-CCCCCCeEEEEecCCCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEE-ec
Q 002200 534 VISPVEVFGYVAVVDELLAVQD-KSYDRPTILLARRVKGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFAT-CF 609 (954)
Q Consensus 534 vlspG~A~G~L~~V~~l~~v~~-~~~~~p~Ill~~~v~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~-~~ 609 (954)
..+||.+.|++++ ..++... ....+|.|||.+..+ -+++| ..+.||||..-. ..||.+|.||++|||-+. |.
T Consensus 396 ~as~G~a~G~vv~--~~~~a~~~~~~g~~~ILV~~~t~-P~~~~~~~~a~GivT~~GG-~tSHaAIvAR~lGiP~VvG~~ 471 (873)
T 1kbl_A 396 PASPGAAAGKVYF--TADEAKAAHEKGERVILVRLETS-PEDIEGMHAAEGILTVRGG-MTSHAAVVARGMGTCCVSGCG 471 (873)
T ss_dssp EEECSEEEEEEES--SHHHHHHHHHTTCCEEEEESSCC-GGGHHHHHHCSEEEESSCC-TTSHHHHHHHHHTCEEEECCT
T ss_pred cccCceEEEEEEE--cHHHHHHhhccCCCEEEEECCCC-HHHHHHHHhccEEEecCCC-CccHHHHHHhHcCCCEEEcCC
Confidence 4699999999854 2222111 112457899997765 34454 258899998776 899999999999999865 55
Q ss_pred ChhhhH--------Hhh-hcCCCeEEEEeccCceEEE
Q 002200 610 DPNILA--------DLQ-SNEGKMLHLKPTSADIAYS 637 (954)
Q Consensus 610 d~~~~~--------~l~-~l~Gk~V~l~vs~~~v~i~ 637 (954)
+.. ++ ... -.+|..|.+.-+...|.+.
T Consensus 472 ~~~-i~~~~~~~~~~~~~l~~G~~vtvDG~~G~V~~g 507 (873)
T 1kbl_A 472 EIK-INEEAKTFELGGHTFAEGDYISLDGSTGKIYKG 507 (873)
T ss_dssp TCE-EETTTTEEEETTEEEETTCEEEEETTTCEEEES
T ss_pred Cce-ecccccEEEeCCeeecCCCEEEEECCCCEEEEC
Confidence 421 11 011 2468888887666545443
No 12
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=92.99 E-value=0.064 Score=57.43 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=52.2
Q ss_pred CCCeEEEEecCCCCCCCC----CCcEEEEcCCCCCcchhhhhhcccCCcceEE-ecChhhhHHhhhcCCCeEEEEeccCc
Q 002200 559 DRPTILLARRVKGEEEIP----DGTVAVLTADMPDVLSHVSVRARNCKVCFAT-CFDPNILADLQSNEGKMLHLKPTSAD 633 (954)
Q Consensus 559 ~~p~Ill~~~v~G~EeIp----~~VaGVit~~~~d~LSHv~VrARn~gVp~a~-~~d~~~~~~l~~l~Gk~V~l~vs~~~ 633 (954)
..|.|||++..+ -++++ ..|.||||..-. ..||.++.||.+|||-+. |.+ ....+ .+|+.|.+......
T Consensus 153 ~~~~ILVa~~l~-Ps~~~~l~~~~~~givt~~Gg-~tSH~AIlAR~lgIPavvg~~~--~~~~~--~~G~~v~vDg~~G~ 226 (258)
T 1zym_A 153 QDEVILVAADLT-PSETAQLNLKKVLGFITDAGG-RTSHTSIMARSLELPAIVGTGS--VTSQV--KNDDYLILDAVNNQ 226 (258)
T ss_dssp CSCEEEECSCCC-HHHHHHSCGGGEEEEECSCCC-SSSHHHHHHHHHTCCEECCCSC--HHHHC--CTTCEEEECCSSCC
T ss_pred CCCeEEEECCCC-HHHHHhhchhhcEEEEEcCCC-cccHHHHHHHHcCCCEEEechh--HHHhC--CCCCEEEEECCCCe
Confidence 457888886654 12222 269999997665 899999999999999755 333 23333 47999998877766
Q ss_pred eEEEE
Q 002200 634 IAYSV 638 (954)
Q Consensus 634 v~i~~ 638 (954)
|.+.+
T Consensus 227 v~~~p 231 (258)
T 1zym_A 227 VYVNP 231 (258)
T ss_dssp EEESC
T ss_pred EEECc
Confidence 66644
No 13
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=92.06 E-value=0.08 Score=65.89 Aligned_cols=72 Identities=25% Similarity=0.352 Sum_probs=52.6
Q ss_pred EeeeeEEEEEEEEe-ccccccccCCCCCCeEEEEecC-CCCCCCC--CCcEEEEcCCCCCcchhhhhhcccCCcceEE-e
Q 002200 534 VISPVEVFGYVAVV-DELLAVQDKSYDRPTILLARRV-KGEEEIP--DGTVAVLTADMPDVLSHVSVRARNCKVCFAT-C 608 (954)
Q Consensus 534 vlspG~A~G~L~~V-~~l~~v~~~~~~~p~Ill~~~v-~G~EeIp--~~VaGVit~~~~d~LSHv~VrARn~gVp~a~-~ 608 (954)
..+||.|+|++++. ++..+.. ...++.|||.+.. | +++| --..||||..=+ .-||.+|.||.+|||-+. |
T Consensus 425 ~aspG~a~G~v~~~~~~~~~~~--~~~~g~ILV~~~T~P--d~~p~M~~a~gIvT~~GG-~TSHAAIvAR~LGIPaVVG~ 499 (913)
T 2x0s_A 425 AASPGAAVGQVVFDAESAKEWS--GRGKKVIMVRLETSP--EDLAGMDAACGILTARGG-MTSHAAVVARGMGKCCVSGC 499 (913)
T ss_dssp EEESSEEEEEEESSHHHHHHHT--TTTCCEEEEESSCCT--TSHHHHTTSSEEEESSCC-TTCHHHHHHHTTTCCEEECC
T ss_pred ccCCccceeeEEechhHHHHHh--hCCCceEEEcCCCCH--HHHHHHHHHHHHHHHccC-CCChHHHHHHHcCCCeecCc
Confidence 46999999998763 3332222 2245678888754 5 6777 368899998876 789999999999999854 5
Q ss_pred cC
Q 002200 609 FD 610 (954)
Q Consensus 609 ~d 610 (954)
.+
T Consensus 500 ~~ 501 (913)
T 2x0s_A 500 GD 501 (913)
T ss_dssp TT
T ss_pred ch
Confidence 55
No 14
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=89.52 E-value=0.28 Score=58.03 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=52.8
Q ss_pred CCCeEEEEecCCCCCCCC--C--CcEEEEcCCCCCcchhhhhhcccCCcceEEecChhhhHHhhhcCCCeEEEEeccCce
Q 002200 559 DRPTILLARRVKGEEEIP--D--GTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADI 634 (954)
Q Consensus 559 ~~p~Ill~~~v~G~EeIp--~--~VaGVit~~~~d~LSHv~VrARn~gVp~a~~~d~~~~~~l~~l~Gk~V~l~vs~~~v 634 (954)
.+|.|||++..+ -++++ + .+.||||..-. ..||.+|.||++|||-+.--. +....+ .+|..|.+.-+...|
T Consensus 155 ~~~~ILVa~~l~-P~~~~~l~~~~~~Givt~~Gg-~tSHaAIvAR~lgIPaVvg~~-~~~~~~--~~G~~v~vDg~~G~V 229 (572)
T 2wqd_A 155 DESVVIVGNDLT-PSDTAQLNKEFVQGFATNIGG-RTSASAIMSRSLEIPAIVGTK-SITQEV--KQGDMIIVDGLNGDV 229 (572)
T ss_dssp SCCEEEEESCCC-HHHHTTCCTTTEEEEEESSCC-TTSHHHHHHHHTTCCEEECCS-SHHHHC--CTTCEEEEETTTTEE
T ss_pred CCCEEEEEcCCC-HHHHHhhChhceeEEEEcCCC-cccHHHHHHHHcCCCEEEech-hHHhhC--CCCCEEEEECCCCEE
Confidence 468899987665 13333 1 49999998766 899999999999999755332 223322 479999988776556
Q ss_pred EEEE
Q 002200 635 AYSV 638 (954)
Q Consensus 635 ~i~~ 638 (954)
.+.+
T Consensus 230 ~~~p 233 (572)
T 2wqd_A 230 IVNP 233 (572)
T ss_dssp EESC
T ss_pred EeCC
Confidence 5544
No 15
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=88.82 E-value=0.28 Score=58.12 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCCeEEEEecCCCCCCCC----CCcEEEEcCCCCCcchhhhhhcccCCcceEE-ecChhhhHHhhhcCCCeEEEEeccCc
Q 002200 559 DRPTILLARRVKGEEEIP----DGTVAVLTADMPDVLSHVSVRARNCKVCFAT-CFDPNILADLQSNEGKMLHLKPTSAD 633 (954)
Q Consensus 559 ~~p~Ill~~~v~G~EeIp----~~VaGVit~~~~d~LSHv~VrARn~gVp~a~-~~d~~~~~~l~~l~Gk~V~l~vs~~~ 633 (954)
.+|.|||++..+ -++++ ..+.||||..-. ..||.+|.||++|||-+. |.+ ....+ .+|..|.+.-+...
T Consensus 153 ~~~~ILVa~~l~-Ps~~~~l~~~~~~Givt~~Gg-~tSHaAIvAR~lgIPaVvG~~~--~~~~~--~~G~~v~vDg~~G~ 226 (575)
T 2hwg_A 153 QDEVILVAADLT-PSETAQLNLKKVLGFITDAGG-RTSHTSIMARSLELPAIVGTGS--VTSQV--KNDDYLILDAVNNQ 226 (575)
T ss_dssp CSCEEEEESCCC-HHHHHTCCTTTEEEEEESSCC-TTSHHHHHHHHTTCCEEECCSC--HHHHC--CTTCEEEEETTTTE
T ss_pred CCCEEEEEcCCC-HHHHHHhCccceeEEEEcCCC-cccHHHHHHHHCCCCEEEcchh--HHhhC--CCCCEEEEECCCCE
Confidence 568899987665 12232 159999998766 899999999999999755 444 23322 47999999877655
Q ss_pred eEEEE
Q 002200 634 IAYSV 638 (954)
Q Consensus 634 v~i~~ 638 (954)
|.+.+
T Consensus 227 V~~~p 231 (575)
T 2hwg_A 227 VYVNP 231 (575)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 65544
No 16
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=51.98 E-value=11 Score=34.95 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=28.1
Q ss_pred EEEEEecccccccceEEEecC-CceeecCCCceEEEcc
Q 002200 30 SIEIEIEEEGYVGMPFVLQSG-GNWIKNKGSDFYVDFS 66 (954)
Q Consensus 30 ~~~~~~~~~~~~g~~~v~~~~-~~w~~~~~~d~~~~~~ 66 (954)
+.+|+++.. ..+.||+++| ++|-+|+|.||.+.-.
T Consensus 52 ~~TI~~~~~--~~l~~~F~dG~~~WDNN~g~Ny~~~~g 87 (102)
T 2c3v_A 52 KVTIEAEEG--SQLRAAFNNGSGQWDNNQGRDYDFSSG 87 (102)
T ss_dssp EEEECCCTT--CEEEEEEECSSSCEECGGGTCEEEESE
T ss_pred EEEEecCCC--ceEEEEEeCCCcccccCCCcceEECCC
Confidence 477777654 5789999987 5899999999999643
No 17
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=48.38 E-value=16 Score=33.95 Aligned_cols=35 Identities=17% Similarity=0.416 Sum_probs=28.3
Q ss_pred EEEEEecccccccceEEEecCC-ceeecCCCceEEEcc
Q 002200 30 SIEIEIEEEGYVGMPFVLQSGG-NWIKNKGSDFYVDFS 66 (954)
Q Consensus 30 ~~~~~~~~~~~~g~~~v~~~~~-~w~~~~~~d~~~~~~ 66 (954)
+.+|+++.. ..+.|++++|. +|-+|++.||.++.-
T Consensus 47 ~~TI~l~~g--~~~~~~F~dG~~~WDNn~g~Nyt~~~g 82 (104)
T 2laa_A 47 KITVDIGSA--SQLEAAFNDGNNNWDSNNTKNYSFSTG 82 (104)
T ss_dssp EEEEECTTC--SCEEEEEECSSSCEESTTTSCEEECSE
T ss_pred EEEEECCCC--CEEEEEEeCCCCcCcCCCCccEEecCC
Confidence 478888764 46788888874 899999999999774
No 18
>2la2_A Cecropin, papiliocin; antimicrobial peptide, cecropin-like peptide, AN inflammatory activity, antimicrobial protein; NMR {Papilio xuthus}
Probab=24.87 E-value=19 Score=27.61 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=9.2
Q ss_pred CchhhHHHHHH
Q 002200 191 VGQRIRDEILV 201 (954)
Q Consensus 191 ~gq~iRd~IL~ 201 (954)
+||+|||.|..
T Consensus 11 vGq~iRd~ii~ 21 (38)
T 2la2_A 11 VGRNVRDGIIK 21 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 69999999863
No 19
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=24.60 E-value=5e+02 Score=28.61 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=82.7
Q ss_pred HHHHHHHhhhh----hhh---hhHHHHHH------HHHHHHHHH----HHcCchhhHHHHHHHhhhccceeeecCCCCCC
Q 002200 85 ALLEKIAGLEI----EAQ---KSFMHRFN------IAADLIQEA----KEAGELGFAGILVWMRFMATRQLIWNKNYNVK 147 (954)
Q Consensus 85 ~~~~~i~~~e~----~~~---~slmhR~n------~~~~~~~~~----~~~g~~~~a~i~~w~r~~a~r~L~w~~nyn~~ 147 (954)
.+=.+|.+-+- ||+ ||+..||- -|-|||-.. ...|+.+.|+=++=|= ++=+...+++
T Consensus 18 rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~ll------vevy~~~~~~ 91 (336)
T 3lpz_A 18 RLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLL------VDTFRQAGQR 91 (336)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHTCC
T ss_pred HHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHH------HHHHHHcCCC
Confidence 34455555443 453 89999994 444554432 2345544333222111 1112234555
Q ss_pred hhhhHHHHHHHHHHHHHHHccCchhHHHHHHHHhhccCCCCCCCchh-hHHH--------------HHHHHhcCCCCc--
Q 002200 148 PREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQR-IRDE--------------ILVIQRNNNCKG-- 210 (954)
Q Consensus 148 pr~~~~~q~~~t~~~~~~~~~~~~~r~~~R~~l~t~~rgg~g~~gq~-iRd~--------------IL~i~r~n~~kg-- 210 (954)
+-+ ..-+||...+...-.+.|.-..+++-++.=--.-|+...|+- +..- -.|.+. +..+
T Consensus 92 ~~~--~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il--g~~~s~ 167 (336)
T 3lpz_A 92 VDG--ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL--GTKESP 167 (336)
T ss_dssp CCH--HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT--SCTTHH
T ss_pred CCH--HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh--cCCchH
Confidence 543 455666666665545677777777776654444343344532 2211 122222 3332
Q ss_pred ----chHHHHHhhhcCCCCCchHHHHHHHHHHHhhCCChhh
Q 002200 211 ----GMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISA 247 (954)
Q Consensus 211 ----~~~e~WHQkLhnnttpddv~ICea~l~~l~s~~~~~~ 247 (954)
-|+-||.++-- .+=.|..|++|.|-||-.+ |+..
T Consensus 168 ~~~a~mL~ew~~~~~--~~e~dlfiaRaVL~yL~l~-n~~~ 205 (336)
T 3lpz_A 168 EVLARMEYEWYKQDE--SHTAPLYCARAVLPYLLVA-NVRA 205 (336)
T ss_dssp HHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhC-CHHH
Confidence 39999988754 4445889999999999998 7754
No 20
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana}
Probab=20.37 E-value=91 Score=33.50 Aligned_cols=87 Identities=22% Similarity=0.298 Sum_probs=62.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHccCc-hhHHHHHHHHhhcc-------CCCCCCCchhhHHHHH-HHHhcCCCCcc--hHHH
Q 002200 147 KPREISKAQDRLTDLLQNVYISNP-ECREIVRMILSTVG-------RGGEGDVGQRIRDEIL-VIQRNNNCKGG--MMEE 215 (954)
Q Consensus 147 ~pr~~~~~q~~~t~~~~~~~~~~~-~~r~~~R~~l~t~~-------rgg~g~~gq~iRd~IL-~i~r~n~~kg~--~~e~ 215 (954)
|-|+=+.++.-+-..+.++...+| ....++||...--+ +||- +| .||-..- .---|++...+ ++|+
T Consensus 6 ~~~~~~~~~~iV~~~v~~~~~~~~~~a~~llRLafHDc~Ty~~~~~~gGc--DG-SIll~~E~~~~~N~gL~~~~~~l~~ 82 (268)
T 3rrw_A 6 QRRQRSEFQSKIKILLSTTIKAKPELVPSLLKLALNDAMTYDKATKSGGA--NG-SIRFSSELSRAENEGLSDGLSLIEE 82 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCBTTTTBCSS--SS-GGGSHHHHTSGGGTTCHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHhhcCcCCCCCCCCC--Ce-eeeehhhccCcccccHHHHHHHHHH
Confidence 456778888888899999888777 57899999998888 8887 88 8886421 11223344333 8999
Q ss_pred HHhhhcC-----CCCCchHHHHHHHH
Q 002200 216 WHQKLHN-----NTSPDDVIICQALI 236 (954)
Q Consensus 216 WHQkLhn-----nttpddv~ICea~l 236 (954)
.++|++. ..|--|++.--+--
T Consensus 83 iK~~~e~~cpg~~VS~ADliaLAa~~ 108 (268)
T 3rrw_A 83 VKKEIDSISKGGPISYADIIQLAGQS 108 (268)
T ss_dssp HHHHHHTTCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHH
Confidence 9999974 66777877654443
No 21
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=20.10 E-value=2e+02 Score=30.73 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=40.9
Q ss_pred ccCchhHHHHHHHHhhccCCCCCCCchhhHHHHHHHHhcCCC--Cc-chHHHHHhhhcCCCCCchHHHHHHHHHHHhhC
Q 002200 167 ISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNC--KG-GMMEEWHQKLHNNTSPDDVIICQALIDYIKSD 242 (954)
Q Consensus 167 ~~~~~~r~~~R~~l~t~~rgg~g~~gq~iRd~IL~i~r~n~~--kg-~~~e~WHQkLhnnttpddv~ICea~l~~l~s~ 242 (954)
..||||+-+-+|.=+ +| .|.-++--|+|=.=-.-- || -|-.+--+-.-+| +|.| ||++|+.||.+.
T Consensus 27 e~DpQy~av~~L~~~---~~----~~~f~~Lvi~NaLvSYQLsgkGEe~W~~Fs~yfs~~-~~~~--l~~~~~~Fl~~s 95 (256)
T 1xqo_A 27 RRDPQYRAVCNVVKR---HG----ETVGSRLAMLNALISYRLTGKGEEHWEYFGKYFSQL-EVID--LCRDFLKYIETS 95 (256)
T ss_dssp TTSHHHHHHHHHHHH---HC----HHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHTS-CCSS--HHHHHHHHHHHC
T ss_pred hhCHHHHHHHHHHHh---cC----chHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcC-Chhh--HHHHHHHHHhcC
Confidence 369999999999876 33 466666555544433322 22 1222222333334 5777 999999999976
Done!