BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002201
(954 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 37/82 (45%)
Query: 861 NNKKRAEEEATAHKVGGACHHSLATMQSLNTFRRTEHDRVCFGRSGIHGWGLFARRNIQE 920
N EEE A L ++T + V RS IHG GLF +RNI
Sbjct: 15 NPNDEEEEEVQLKSARRATSMDLPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDA 74
Query: 921 GEMVLEYRGEQVRRSIADLRER 942
GEMV+EY G +R D RE+
Sbjct: 75 GEMVIEYAGNVIRSIQTDKREK 96
>pdb|2DAQ|A Chain A, Solution Structure Of Second Pwwp Domain Of Whsc1l1
Protein
Length = 110
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 264 IVWAKSGKNYPYWPAIVIDPMTQAPDVV-LRSCIPDAACVMFFGHCGDVNQRDYAWVKRG 322
IVW K G NY +WPA + +P + ++ L+ + D V FFG DY WV +G
Sbjct: 14 IVWVKLG-NYRWWPAEICNPRSVPLNIQGLKHDLGDFP-VFFFG------SHDYYWVHQG 65
Query: 323 LIFPFVDFVDRFQE-QSELNDCKPSDFQMALEEA 355
+FP+V+ F E Q+ +N F+ ALEEA
Sbjct: 66 RVFPYVEGDKSFAEGQTSINKT----FKKALEEA 95
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 639 CAVCRWVEDWDYNKIIICNRCQIAVHQECYG 669
C++C E + N I+ C+ C +AVHQECYG
Sbjct: 19 CSICMDGESQNSNVILFCDMCNLAVHQECYG 49
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 639 CAVCRWVEDWDYNKIIICNRCQIAVHQECYGA 670
C++C E + N I+ C+ C +AVHQECYG
Sbjct: 28 CSICMDGESQNSNVILFCDMCNLAVHQECYGV 59
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 899 RVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERD 943
R+ R+ GWG+ A + I +G + EY GE + + AD+RE D
Sbjct: 127 RLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVREDD 171
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 899 RVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERD 943
R+ R+ GWG+ A + I +G + EY GE + + AD+RE D
Sbjct: 129 RLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADVREDD 173
>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger
Length = 87
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 729 IPSNSFVKICVICKQIH-GSCTQCCK--CSTYYHAMCASRAGYRMELHCL-EKNGRQIT- 783
IP + C +CKQ G+ QC K C T +H CA +AG M++ + E G T
Sbjct: 11 IPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTF 70
Query: 784 --KMVSYCAYHRAP 795
+ +YC H P
Sbjct: 71 SVRKTAYCDVHTPP 84
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 899 RVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERD 943
R+ R+ GWG+ + ++I G V EY GE + S AD+RE D
Sbjct: 146 RLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREED 190
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 899 RVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERD 943
R+ R+ GWG+ + ++I G V EY GE + S AD+RE D
Sbjct: 148 RLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREED 192
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 899 RVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERD 943
R+ R+ GWG+ + ++I G V EY GE + S AD+RE D
Sbjct: 147 RLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREED 191
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 466 DGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFNFELSDSERGQRKVKS 525
D G + CD C VW H +C I H D Y C C+ + N + + QR+ +
Sbjct: 38 DDGYMICCDKCSVWQHIDCMGIDRQHIPDT----YLCERCQPR-NLDKERAVLLQRRKRE 92
Query: 526 NKNNG 530
N ++G
Sbjct: 93 NMSDG 97
>pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain
Length = 153
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYA 317
DF GD+++AK K YP+WPA V + PD ++ + + FFG + A
Sbjct: 22 DFKPGDLIFAKM-KGYPHWPARV----DEVPDGAVKPPT-NKLPIFFFG------THETA 69
Query: 318 WVKRGLIFPFVDFVDRF 334
++ IFP+ + +++
Sbjct: 70 FLGPKDIFPYSENKEKY 86
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 899 RVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERD 943
R+ R+ GWG+ + ++I G V EY GE + S AD+RE D
Sbjct: 122 RLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREED 166
>pdb|2GFU|A Chain A, Nmr Solution Structure Of The Pwwp Domain Of Mismatch
Repair Protein Hmsh6
Length = 134
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 258 DFYSGDIVWAKSGKNYPYWPAIVID 282
DF GD+VWAK + YP+WP++V +
Sbjct: 22 DFSPGDLVWAKM-EGYPWWPSLVYN 45
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 451 SKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKA 507
+K +C ICK ++ S ++ CD C+ W H C I S + + EY CP C++
Sbjct: 7 TKLYC-ICKTPYDES--KFYIGCDRCQNWYHGRCVGILQSEAELI--DEYVCPQCQS 58
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 470 WVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508
W+ CD C++W H +C KI+ + + + +Y CP+C K
Sbjct: 22 WICCDLCEMWFHGKCVKITPARAEHI--KQYKCPSCSNK 58
>pdb|2B8A|A Chain A, High Resolution Structure Of The Hdgf Pwwp Domain
Length = 110
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 262 GDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKR 321
GD+V+AK K YP+WPA ID M P+ ++S + V FFG + A++
Sbjct: 13 GDLVFAKM-KGYPHWPA-RIDEM---PEAAVKSTA-NKYQVFFFG------THETAFLGP 60
Query: 322 GLIFPFVDFVDRF 334
+FP+ + ++F
Sbjct: 61 KDLFPYEESKEKF 73
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 451 SKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKA 507
+K +C ICK ++ S ++ CD C+ W H C I S + + EY CP C++
Sbjct: 7 TKLYC-ICKTPYDES--KFYIGCDRCQNWYHGRCVGILQSEAELI--DEYVCPQCQS 58
>pdb|1RI0|A Chain A, Nmr Structure Of The N-Terminal Hath Domain Of Human Hdgf
Length = 110
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 262 GDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKR 321
GD+V+AK K YP+WPA ID M P+ ++S + V FFG + A++
Sbjct: 23 GDLVFAKM-KGYPHWPA-RIDEM---PEAAVKSTA-NKYQVFFFG------THETAFLGP 70
Query: 322 GLIFPFVDFVDRF 334
+FP+ + ++F
Sbjct: 71 KDLFPYEESKEKF 83
>pdb|2NLU|A Chain A, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma-
Derived Growth Factor
pdb|2NLU|B Chain B, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma-
Derived Growth Factor
Length = 100
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 262 GDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKR 321
GD+V+AK K YP+WPA ID M P+ ++S + V FFG + A++
Sbjct: 13 GDLVFAKM-KGYPHWPA-RIDEM---PEAAVKSTA-NKYQVFFFG------THETAFLGP 60
Query: 322 GLIFPFVDFVDRF 334
+FP+ + ++F
Sbjct: 61 KDLFPYEESKEKF 73
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 871 TAHKVGGACHHSLATMQSLNTFRRTEHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGE 930
T GG C + F + ++ V R+ GWGL + +I++GE V EY GE
Sbjct: 73 TVCPAGGRCQNQ--------CFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGE 124
Query: 931 QV 932
+
Sbjct: 125 LI 126
>pdb|3L42|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger Containing
Protein 1
pdb|3MO8|A Chain A, Pwwp Domain Of Human Bromodomain And Phd Finger-Containing
Protein 1 In Complex With Trimethylated H3k36 Peptide
Length = 130
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 263 DIVWAKSGKNYPYWPAIVIDP 283
D+VWAK + YP +PA++IDP
Sbjct: 10 DLVWAKC-RGYPSYPALIIDP 29
>pdb|1N3J|A Chain A, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|1N3J|B Chain B, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|2G46|A Chain A, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|B Chain B, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|3KMA|A Chain A, Crystal Structure Of Vset Under Condition A
pdb|3KMA|B Chain B, Crystal Structure Of Vset Under Condition A
pdb|3KMJ|A Chain A, Crystal Structure Of Vset Under Condition B
pdb|3KMT|A Chain A, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|B Chain B, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|C Chain C, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
Length = 119
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 897 HDRVCFGRSGIHGWGLFARRNIQEGEMVLE 926
+DRV +S + G+G+FAR++ ++GE+V E
Sbjct: 3 NDRVIVKKSPLGGYGVFARKSFEKGELVEE 32
>pdb|2X35|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4W|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|C Chain C, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|E Chain E, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|G Chain G, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|A Chain A, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|C Chain C, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|E Chain E, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|G Chain G, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|I Chain I, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|K Chain K, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|M Chain M, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|O Chain O, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1
Length = 132
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 263 DIVWAKSGKNYPYWPAIVIDP 283
D+VWAK + YP +PA++IDP
Sbjct: 14 DLVWAKC-RGYPSYPALIIDP 33
>pdb|3PMI|A Chain A, Pwwp Domain Of Human Mutated Melanoma-Associated Antigen 1
pdb|3PMI|B Chain B, Pwwp Domain Of Human Mutated Melanoma-Associated Antigen 1
pdb|3PMI|C Chain C, Pwwp Domain Of Human Mutated Melanoma-Associated Antigen 1
pdb|3PMI|D Chain D, Pwwp Domain Of Human Mutated Melanoma-Associated Antigen 1
Length = 134
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 256 PEDFYSGDIVWAKSGKNYPYWPAIV 280
P F G +VW K K YP+WPA+V
Sbjct: 2 PRSFEVGXLVWHKH-KKYPFWPAVV 25
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 471 VRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPAC 505
+ CD CK W H C + H D+ Y+CP C
Sbjct: 53 IECDICKDWFHGSCVGVEEHHAVDI--DLYHCPNC 85
>pdb|3EAE|A Chain A, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
pdb|3EAE|B Chain B, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
Length = 93
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 256 PEDFYSGDIVWAKSGKNYPYWPAIVID 282
P F GD+V+AK K YP+WPA + D
Sbjct: 2 PHAFKPGDLVFAKM-KGYPHWPARIDD 27
>pdb|3QBY|A Chain A, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|B Chain B, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|C Chain C, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QJ6|A Chain A, The Crystal Structure Of Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2 In Complex With
H3k79me3 Peptide
Length = 94
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 256 PEDFYSGDIVWAKSGKNYPYWPAIVID 282
P F GD+V+AK K YP+WPA + D
Sbjct: 3 PHAFKPGDLVFAKM-KGYPHWPARIDD 28
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 451 SKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKA 507
+K +C ICK + S ++ CD C+ W H C I S + + EY CP C++
Sbjct: 7 TKLYC-ICKTPEDES--KFYIGCDRCQNWYHGRCVGILQSEAELI--DEYVCPQCQS 58
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 470 WVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPAC 505
W+ CD C+ W H C + F+ +++CP C
Sbjct: 58 WIGCDSCQTWYHFLCSGL--EQFEYYLYEKFFCPKC 91
>pdb|2M16|A Chain A, P75/ledgf Pwwp Domain
Length = 97
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYA 317
DF GD+++AK K YP+WPA V + PD ++ + + FFG + A
Sbjct: 8 DFKPGDLIFAKM-KGYPHWPARV----DEVPDGAVKPPT-NKLPIFFFG------THETA 55
Query: 318 WVKRGLIFPFVDFVDRF 334
++ IFP+ + +++
Sbjct: 56 FLGPKDIFPYSENKEKY 72
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human
Bptf In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 451 SKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKA 507
+K +C ICK ++ S ++ CD C+ W H C I S + + EY CP C++
Sbjct: 7 TKLYC-ICKTPYDESK--FYIGCDRCQNWYHGRCVGILQSEAELI--DEYVCPQCQS 58
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 471 VRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFNFELSDSERGQRK 522
+ CD C+ W H C + D+ Y+CP C+ + RG K
Sbjct: 21 IECDMCQDWFHGSCVGVEEEKAADI--DLYHCPNCEVLHGPSIMKKRRGSSK 70
>pdb|1N27|A Chain A, Solution Structure Of The Pwwp Domain Of Mouse Hepatoma-
Derived Growth Factor, Related Protein 3
Length = 96
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYA 317
++ +GD+V+AK K YP+WPA ID + + + P + FFG + A
Sbjct: 8 EYKAGDLVFAKM-KGYPHWPA-RIDELPEGAVKPPANKYP----IFFFG------THETA 55
Query: 318 WVKRGLIFPFVDFVDRFQEQSE 339
++ +FP+ ++ D+F + ++
Sbjct: 56 FLGPKDLFPYKEYKDKFGKSNK 77
>pdb|2L89|A Chain A, Solution Structure Of Pdp1 Pwwp Domain Reveals Its Unique
Binding Sites For Methylated H4k20 And Dna
Length = 108
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 262 GDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKR 321
GD + K+ YP+WPA+++ + S V+FF D N +AWVKR
Sbjct: 9 GDRILVKA-PGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP---DFN---FAWVKR 61
Query: 322 GLIFPFVD 329
+ P +D
Sbjct: 62 NSVKPLLD 69
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 471 VRCDGCKVWVHAECDKISSSHFKDL--GGSEYYCPAC 505
+ CD C+ W H +C IS + + L G +Y CP C
Sbjct: 31 ICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,217,928
Number of Sequences: 62578
Number of extensions: 1222374
Number of successful extensions: 2229
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2189
Number of HSP's gapped (non-prelim): 69
length of query: 954
length of database: 14,973,337
effective HSP length: 108
effective length of query: 846
effective length of database: 8,214,913
effective search space: 6949816398
effective search space used: 6949816398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)