Query 002201
Match_columns 954
No_of_seqs 626 out of 1702
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 18:48:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1080 Histone H3 (Lys4) meth 100.0 1.2E-71 2.7E-76 674.2 29.3 826 1-951 1-920 (1005)
2 KOG0956 PHD finger protein AF1 100.0 1.2E-31 2.7E-36 305.3 4.6 156 636-797 5-185 (900)
3 KOG0955 PHD finger protein BR1 100.0 1.1E-30 2.4E-35 318.2 8.9 159 635-795 218-396 (1051)
4 COG5141 PHD zinc finger-contai 100.0 5.2E-31 1.1E-35 291.4 3.2 169 626-797 182-367 (669)
5 KOG0954 PHD finger protein [Ge 100.0 2.3E-30 5.1E-35 297.4 6.8 156 635-794 270-438 (893)
6 cd05838 WHSC1_related The PWWP 99.9 3.7E-25 8.1E-30 205.0 7.6 93 259-361 1-94 (95)
7 cd05836 N_Pac_NP60 The PWWP do 99.9 4.5E-22 9.8E-27 181.2 8.2 82 259-356 1-83 (86)
8 cd05834 HDGF_related The PWWP 99.8 1.4E-21 3E-26 176.9 8.2 80 258-356 2-81 (83)
9 cd05835 Dnmt3b_related The PWW 99.8 8.9E-22 1.9E-26 179.7 6.7 86 259-358 1-86 (87)
10 cd05162 PWWP The PWWP domain, 99.8 2.5E-21 5.4E-26 176.4 9.4 86 259-357 1-86 (87)
11 KOG0957 PHD finger protein [Ge 99.8 2.3E-22 5E-27 223.5 -0.4 152 638-794 121-300 (707)
12 PF00855 PWWP: PWWP domain; I 99.8 4.4E-21 9.5E-26 173.4 5.2 86 259-358 1-86 (86)
13 cd05840 SPBC215_ISWI_like The 99.8 1.4E-20 3.1E-25 173.7 7.6 87 259-356 1-91 (93)
14 PF13832 zf-HC5HC2H_2: PHD-zin 99.8 4.6E-20 1E-24 174.9 7.8 107 680-792 2-110 (110)
15 cd05837 MSH6_like The PWWP dom 99.8 8.2E-19 1.8E-23 167.0 9.3 94 258-358 2-102 (110)
16 smart00293 PWWP domain with co 99.8 1.1E-18 2.5E-23 150.0 7.0 62 259-328 1-63 (63)
17 cd05841 BS69_related The PWWP 99.7 3.1E-18 6.7E-23 154.2 8.6 78 256-356 4-81 (83)
18 cd05839 BR140_related The PWWP 99.7 1.5E-16 3.3E-21 150.6 7.9 92 259-358 1-107 (111)
19 cd06080 MUM1_like Mutated mela 99.6 2.1E-16 4.5E-21 141.7 4.0 75 259-355 1-76 (80)
20 KOG1904 Transcription coactiva 99.3 8.5E-13 1.8E-17 152.2 6.1 90 255-359 9-98 (496)
21 PF13771 zf-HC5HC2H: PHD-like 99.3 4.1E-13 8.9E-18 122.8 2.0 86 702-793 1-90 (90)
22 smart00258 SAND SAND domain. 98.9 4.6E-10 9.9E-15 98.8 2.5 62 537-598 2-68 (73)
23 PF01342 SAND: SAND domain; I 98.9 5.2E-10 1.1E-14 101.4 0.4 66 535-600 8-79 (82)
24 KOG1079 Transcriptional repres 98.8 1.4E-09 3.1E-14 127.0 2.9 56 895-950 591-646 (739)
25 KOG4443 Putative transcription 98.7 1.9E-09 4E-14 126.0 -1.1 100 403-512 106-206 (694)
26 PF13831 PHD_2: PHD-finger; PD 98.6 5.6E-09 1.2E-13 80.3 0.0 35 651-685 2-36 (36)
27 KOG4442 Clathrin coat binding 98.5 7.6E-08 1.7E-12 113.5 5.5 56 891-946 113-168 (729)
28 PF00628 PHD: PHD-finger; Int 98.4 9.9E-08 2.1E-12 78.4 2.1 51 454-508 1-51 (51)
29 smart00249 PHD PHD zinc finger 98.0 4.3E-06 9.4E-11 66.1 3.2 47 454-505 1-47 (47)
30 KOG1082 Histone H3 (Lys9) meth 97.8 1.1E-05 2.3E-10 92.4 3.5 51 896-946 174-224 (364)
31 KOG1512 PHD Zn-finger protein 97.8 6.8E-06 1.5E-10 88.3 0.8 45 638-685 316-361 (381)
32 PF00628 PHD: PHD-finger; Int 97.6 2.1E-05 4.6E-10 64.6 1.6 45 638-685 1-49 (51)
33 smart00249 PHD PHD zinc finger 97.5 7.7E-05 1.7E-09 58.9 3.2 45 638-684 1-47 (47)
34 KOG1973 Chromatin remodeling p 97.5 5.1E-05 1.1E-09 83.8 2.1 40 465-509 227-269 (274)
35 KOG4299 PHD Zn-finger protein 97.5 8.8E-05 1.9E-09 87.7 4.0 47 637-686 254-304 (613)
36 KOG1244 Predicted transcriptio 97.4 4E-05 8.7E-10 82.1 0.6 45 638-685 283-329 (336)
37 KOG0825 PHD Zn-finger protein 97.4 9.2E-05 2E-09 88.4 3.3 48 636-686 215-265 (1134)
38 KOG4323 Polycomb-like PHD Zn-f 97.4 0.0002 4.3E-09 83.0 5.6 118 635-771 82-208 (464)
39 smart00317 SET SET (Su(var)3-9 97.1 0.00085 1.8E-08 62.4 6.0 47 900-946 2-48 (116)
40 KOG1085 Predicted methyltransf 97.0 0.00068 1.5E-08 73.5 4.5 48 899-946 257-304 (392)
41 KOG1081 Transcription factor N 96.9 0.00046 1E-08 81.3 2.6 79 258-355 135-213 (463)
42 KOG4323 Polycomb-like PHD Zn-f 96.7 0.00081 1.8E-08 78.1 2.3 69 636-706 168-241 (464)
43 COG5034 TNG2 Chromatin remodel 96.7 0.00081 1.7E-08 72.1 1.9 48 451-508 220-270 (271)
44 PF07227 DUF1423: Protein of u 95.9 0.0051 1.1E-07 71.1 3.2 89 407-511 97-195 (446)
45 PF15446 zf-PHD-like: PHD/FYVE 95.7 0.0086 1.9E-07 61.0 3.4 49 638-686 1-59 (175)
46 KOG1083 Putative transcription 95.4 0.0025 5.5E-08 78.8 -1.8 45 896-940 1176-1220(1306)
47 KOG0954 PHD finger protein [Ge 94.7 0.014 3E-07 70.4 1.7 39 465-508 283-321 (893)
48 COG2940 Proteins containing SE 94.5 0.0086 1.9E-07 71.3 -0.7 51 896-946 330-380 (480)
49 KOG1973 Chromatin remodeling p 93.2 0.036 7.9E-07 61.4 1.3 37 649-686 228-267 (274)
50 PF13831 PHD_2: PHD-finger; PD 92.2 0.041 8.9E-07 42.7 0.0 34 469-506 3-36 (36)
51 COG5034 TNG2 Chromatin remodel 90.4 0.18 3.9E-06 54.7 2.6 45 637-685 221-268 (271)
52 KOG4443 Putative transcription 89.7 0.094 2E-06 63.1 -0.2 51 636-686 18-70 (694)
53 KOG0383 Predicted helicase [Ge 89.5 0.16 3.5E-06 62.5 1.6 45 636-686 47-93 (696)
54 PF13639 zf-RING_2: Ring finge 89.3 0.071 1.5E-06 42.5 -1.1 43 454-506 2-44 (44)
55 KOG0957 PHD finger protein [Ge 89.3 0.31 6.8E-06 56.9 3.5 56 451-507 118-178 (707)
56 KOG1512 PHD Zn-finger protein 88.1 0.22 4.8E-06 54.6 1.3 80 413-507 279-362 (381)
57 KOG1084 Transcription factor T 87.7 0.22 4.8E-06 57.7 1.1 82 697-793 237-321 (375)
58 KOG0955 PHD finger protein BR1 87.7 0.34 7.3E-06 62.2 2.7 89 259-355 943-1050(1051)
59 KOG1244 Predicted transcriptio 87.5 0.3 6.5E-06 53.3 1.9 78 413-508 246-331 (336)
60 KOG1473 Nucleosome remodeling 87.2 0.74 1.6E-05 58.5 5.1 109 635-765 343-459 (1414)
61 smart00333 TUDOR Tudor domain. 86.7 1.3 2.9E-05 36.7 4.9 53 258-328 2-54 (57)
62 PF14446 Prok-RING_1: Prokaryo 86.6 0.46 1E-05 40.2 2.1 33 635-668 4-36 (54)
63 KOG1473 Nucleosome remodeling 86.1 0.6 1.3E-05 59.3 3.5 68 636-709 428-515 (1414)
64 smart00743 Agenet Tudor-like d 85.0 1.3 2.9E-05 37.6 4.2 38 258-306 2-39 (61)
65 KOG0956 PHD finger protein AF1 82.8 1.2 2.6E-05 54.2 3.9 46 455-508 8-57 (900)
66 KOG4299 PHD Zn-finger protein 82.3 0.57 1.2E-05 56.5 1.2 43 468-511 266-308 (613)
67 KOG0383 Predicted helicase [Ge 80.2 0.81 1.8E-05 56.7 1.4 51 447-506 42-92 (696)
68 KOG1141 Predicted histone meth 79.8 1.2 2.6E-05 54.9 2.7 44 898-941 799-842 (1262)
69 KOG2752 Uncharacterized conser 76.3 1.3 2.7E-05 49.7 1.4 86 399-488 48-167 (345)
70 cd04508 TUDOR Tudor domains ar 74.6 4.5 9.8E-05 32.3 3.9 48 262-326 1-48 (48)
71 PF08169 RBB1NT: RBB1NT (NUC16 73.7 14 0.00031 35.0 7.3 60 261-330 8-68 (96)
72 PF11717 Tudor-knot: RNA bindi 70.3 5.6 0.00012 33.6 3.6 54 259-325 1-54 (55)
73 PF14446 Prok-RING_1: Prokaryo 69.5 3.7 8E-05 34.9 2.3 37 735-771 5-44 (54)
74 COG5141 PHD zinc finger-contai 68.0 4.3 9.4E-05 47.8 3.2 36 468-508 208-243 (669)
75 PF15446 zf-PHD-like: PHD/FYVE 66.9 13 0.00029 38.5 6.1 54 455-508 2-60 (175)
76 KOG1245 Chromatin remodeling c 66.7 1.4 3E-05 58.8 -1.2 51 454-510 1110-1160(1404)
77 KOG4333 Nuclear DEAF-1 related 65.9 3.4 7.4E-05 48.5 1.9 65 527-591 78-146 (425)
78 PF12773 DZR: Double zinc ribb 65.7 5 0.00011 32.8 2.4 7 454-460 31-37 (50)
79 KOG1632 Uncharacterized PHD Zn 65.4 3.1 6.8E-05 47.8 1.5 49 457-509 64-114 (345)
80 PF00130 C1_1: Phorbol esters/ 64.5 5.4 0.00012 32.8 2.4 37 635-671 10-46 (53)
81 KOG0825 PHD Zn-finger protein 64.2 3.5 7.7E-05 50.9 1.6 46 455-506 218-264 (1134)
82 PF07496 zf-CW: CW-type Zinc F 62.9 3.7 8.1E-05 34.1 1.1 33 469-504 2-34 (50)
83 KOG1844 PHD Zn-finger proteins 59.7 5 0.00011 48.2 1.9 43 467-513 98-140 (508)
84 cd04718 BAH_plant_2 BAH, or Br 59.7 4.3 9.2E-05 41.3 1.1 23 663-686 2-26 (148)
85 KOG1245 Chromatin remodeling c 59.6 2.3 5E-05 56.9 -1.1 48 636-686 1108-1157(1404)
86 KOG1632 Uncharacterized PHD Zn 59.4 1.1 2.4E-05 51.5 -3.6 64 441-507 229-294 (345)
87 PF07649 C1_3: C1-like domain; 58.7 4 8.7E-05 30.1 0.5 28 638-667 2-29 (30)
88 PF11793 FANCL_C: FANCL C-term 58.0 4.9 0.00011 35.7 1.0 34 637-670 3-39 (70)
89 cd00029 C1 Protein kinase C co 57.2 6.2 0.00014 31.6 1.5 35 636-670 11-45 (50)
90 PF03107 C1_2: C1 domain; Int 57.1 8.7 0.00019 28.5 2.1 28 638-668 2-30 (30)
91 PRK14714 DNA polymerase II lar 56.0 7.4 0.00016 51.0 2.5 35 414-462 668-702 (1337)
92 PF00130 C1_1: Phorbol esters/ 55.8 11 0.00024 30.9 2.8 37 450-487 9-45 (53)
93 KOG1701 Focal adhesion adaptor 54.3 18 0.00038 42.5 4.9 67 411-484 358-427 (468)
94 PF11793 FANCL_C: FANCL C-term 53.5 5.1 0.00011 35.6 0.4 58 453-510 3-66 (70)
95 PF07649 C1_3: C1-like domain; 51.7 6.1 0.00013 29.2 0.5 27 737-763 2-30 (30)
96 PRK14890 putative Zn-ribbon RN 51.2 7.6 0.00017 33.6 1.1 13 413-425 7-19 (59)
97 PF13341 RAG2_PHD: RAG2 PHD do 50.4 6.9 0.00015 34.8 0.7 37 468-504 28-67 (78)
98 PF02318 FYVE_2: FYVE-type zin 49.8 27 0.00059 34.0 4.9 51 635-687 53-103 (118)
99 PF00301 Rubredoxin: Rubredoxi 46.3 16 0.00034 30.3 2.2 40 454-508 3-43 (47)
100 COG1198 PriA Primosomal protei 46.2 14 0.00031 46.5 2.8 55 434-508 430-484 (730)
101 PRK04023 DNA polymerase II lar 45.6 14 0.00031 47.4 2.7 18 101-118 364-381 (1121)
102 PF03833 PolC_DP2: DNA polymer 44.4 7.4 0.00016 49.1 0.0 38 412-463 654-691 (900)
103 smart00109 C1 Protein kinase C 43.9 9.8 0.00021 30.1 0.6 34 636-670 11-44 (49)
104 PF12678 zf-rbx1: RING-H2 zinc 43.9 7.7 0.00017 34.6 0.0 45 455-506 22-73 (73)
105 cd00730 rubredoxin Rubredoxin; 43.2 19 0.00042 30.2 2.2 40 454-508 3-43 (50)
106 PF15057 DUF4537: Domain of un 43.0 46 0.001 32.8 5.3 59 256-327 53-112 (124)
107 KOG2462 C2H2-type Zn-finger pr 42.5 15 0.00033 40.8 2.0 95 412-509 129-253 (279)
108 PF13901 DUF4206: Domain of un 42.3 21 0.00046 38.1 3.0 36 635-670 151-189 (202)
109 PF03107 C1_2: C1 domain; Int 41.3 13 0.00029 27.5 1.0 27 737-763 2-30 (30)
110 PF12773 DZR: Double zinc ribb 40.5 14 0.00031 30.1 1.1 38 413-459 12-50 (50)
111 PF13717 zinc_ribbon_4: zinc-r 40.0 22 0.00048 27.6 2.0 27 454-480 4-35 (36)
112 COG5194 APC11 Component of SCF 39.7 10 0.00023 34.7 0.2 29 737-765 22-65 (88)
113 PF00320 GATA: GATA zinc finge 39.6 12 0.00025 29.1 0.4 32 416-451 1-32 (36)
114 TIGR00595 priA primosomal prot 39.4 20 0.00044 43.4 2.6 53 436-508 210-262 (505)
115 PF13832 zf-HC5HC2H_2: PHD-zin 38.7 18 0.00039 34.3 1.7 30 636-669 55-86 (110)
116 PF13719 zinc_ribbon_5: zinc-r 38.7 22 0.00047 27.8 1.8 28 454-481 4-36 (37)
117 PF12861 zf-Apc11: Anaphase-pr 38.1 12 0.00027 34.7 0.4 64 438-511 20-83 (85)
118 PRK14873 primosome assembly pr 36.1 22 0.00048 44.5 2.3 51 437-508 381-431 (665)
119 cd00029 C1 Protein kinase C co 35.8 20 0.00042 28.7 1.2 35 452-487 11-45 (50)
120 PHA02929 N1R/p28-like protein; 35.6 18 0.00039 39.7 1.3 55 451-512 173-229 (238)
121 PF13901 DUF4206: Domain of un 35.6 26 0.00056 37.4 2.4 58 435-507 138-197 (202)
122 COG5243 HRD1 HRD ubiquitin lig 35.6 23 0.00051 40.8 2.1 88 447-541 282-376 (491)
123 PF07191 zinc-ribbons_6: zinc- 35.0 9.2 0.0002 34.3 -0.9 36 415-460 3-38 (70)
124 PRK14559 putative protein seri 34.9 27 0.00059 43.6 2.8 48 414-478 2-49 (645)
125 KOG1829 Uncharacterized conser 34.0 11 0.00024 46.1 -0.8 55 441-509 503-560 (580)
126 PF13639 zf-RING_2: Ring finge 33.8 15 0.00034 29.0 0.3 43 637-684 1-43 (44)
127 cd00162 RING RING-finger (Real 32.9 16 0.00034 27.8 0.2 43 455-508 2-44 (45)
128 smart00401 ZnF_GATA zinc finge 32.3 31 0.00066 29.0 1.8 35 413-452 3-38 (52)
129 PF10080 DUF2318: Predicted me 31.9 20 0.00042 34.5 0.7 34 636-669 35-68 (102)
130 cd00202 ZnF_GATA Zinc finger D 31.9 28 0.00061 29.5 1.5 34 415-452 1-34 (54)
131 KOG1044 Actin-binding LIM Zn-f 30.2 15 0.00033 44.4 -0.4 78 416-505 136-221 (670)
132 smart00109 C1 Protein kinase C 29.4 22 0.00048 28.1 0.5 34 451-486 10-43 (49)
133 KOG2041 WD40 repeat protein [G 28.6 59 0.0013 40.6 4.0 68 615-686 1096-1164(1189)
134 PF12861 zf-Apc11: Anaphase-pr 28.3 24 0.00051 32.9 0.6 51 635-686 20-79 (85)
135 KOG2462 C2H2-type Zn-finger pr 27.7 27 0.00058 38.9 1.0 70 411-480 159-253 (279)
136 PF09538 FYDLN_acid: Protein o 27.4 32 0.00069 33.4 1.3 12 454-465 28-39 (108)
137 PLN02400 cellulose synthase 26.9 52 0.0011 43.2 3.3 50 635-686 35-86 (1085)
138 KOG4628 Predicted E3 ubiquitin 26.8 41 0.00089 38.9 2.2 46 637-686 230-275 (348)
139 PLN02638 cellulose synthase A 26.5 45 0.00098 43.6 2.7 50 635-686 16-67 (1079)
140 PF05502 Dynactin_p62: Dynacti 26.4 54 0.0012 39.6 3.3 86 651-742 3-93 (483)
141 PF05641 Agenet: Agenet domain 25.8 1.1E+02 0.0023 26.9 4.2 59 259-328 1-64 (68)
142 PRK05580 primosome assembly pr 25.6 46 0.001 41.9 2.6 53 436-508 378-430 (679)
143 PF07282 OrfB_Zn_ribbon: Putat 25.6 53 0.0011 28.5 2.2 44 629-672 21-65 (69)
144 COG1198 PriA Primosomal protei 25.6 36 0.00077 43.1 1.6 25 437-461 460-484 (730)
145 PRK14714 DNA polymerase II lar 24.3 53 0.0012 43.6 2.8 42 407-461 667-718 (1337)
146 KOG2807 RNA polymerase II tran 24.1 38 0.00082 38.6 1.3 26 281-308 177-202 (378)
147 PF08846 DUF1816: Domain of un 24.1 1.1E+02 0.0023 27.5 3.8 17 353-369 32-48 (68)
148 PLN02436 cellulose synthase A 23.6 52 0.0011 43.1 2.5 50 635-686 35-86 (1094)
149 KOG1701 Focal adhesion adaptor 23.5 47 0.001 39.2 1.9 144 638-791 276-457 (468)
150 PLN02195 cellulose synthase A 23.2 56 0.0012 42.4 2.7 50 635-686 5-56 (977)
151 PF13248 zf-ribbon_3: zinc-rib 22.9 42 0.00092 24.1 0.9 10 414-423 3-12 (26)
152 PF09297 zf-NADH-PPase: NADH p 22.5 56 0.0012 24.5 1.5 27 452-478 3-29 (32)
153 TIGR00622 ssl1 transcription f 22.1 77 0.0017 31.0 2.8 16 410-425 12-27 (112)
154 COG5219 Uncharacterized conser 21.5 19 0.0004 45.9 -1.8 52 454-511 1471-1524(1525)
155 PRK03564 formate dehydrogenase 21.4 84 0.0018 35.9 3.4 14 498-511 251-264 (309)
156 PF10447 EXOSC1: Exosome compo 21.3 56 0.0012 30.2 1.6 13 257-269 67-79 (82)
157 PF14634 zf-RING_5: zinc-RING 20.9 44 0.00094 26.7 0.7 23 438-460 21-44 (44)
158 PF11781 RRN7: RNA polymerase 20.9 54 0.0012 25.6 1.2 26 637-662 9-34 (36)
159 PF07227 DUF1423: Protein of u 20.4 74 0.0016 37.9 2.7 48 638-686 130-191 (446)
160 cd02342 ZZ_UBA_plant Zinc fing 20.4 67 0.0015 26.3 1.7 33 414-449 1-34 (43)
161 COG0068 HypF Hydrogenase matur 20.4 69 0.0015 40.2 2.5 47 414-460 124-181 (750)
162 PF06906 DUF1272: Protein of u 20.3 84 0.0018 27.2 2.3 43 415-460 7-49 (57)
163 TIGR02098 MJ0042_CXXC MJ0042 f 20.2 62 0.0014 24.9 1.5 27 455-481 5-36 (38)
No 1
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.2e-71 Score=674.23 Aligned_cols=826 Identities=43% Similarity=0.715 Sum_probs=627.7
Q ss_pred Cccccccccc-CCccccccCCCCCCccccchhhhcccc--------CCC-cccccccCccccCCccccccccccccccce
Q 002201 1 MIIKRKLKSQ-MPSLKRCKLGDSANEDNENSAKRKKRK--------TNG-YYPLSLLGGEVAAGILPLSFHGILHSEKGF 70 (954)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (954)
||+||.++.+ .++|+||+.+..-+- .++|++ +|. ++|.|++ ++++++.+|- .+.+.+
T Consensus 1 ~~~~r~~~~~~~~~~rrc~~~~e~~~------~~~k~~~~~~~~~~~~~~~~~~n~~-~~~~~~~vp~------~t~~~~ 67 (1005)
T KOG1080|consen 1 MILKRILTTFGNRNLRRCKIGTEIEY------GRKKGEIIVYKKLQRASVDQPCNSV-PELLTSSVPS------LTSKEE 67 (1005)
T ss_pred CccccccccCCccchhhhccCCcccc------ccccceeEeeccccccccccccccc-ccccccCCCC------CCCCCc
Confidence 8999999997 999999999754321 344444 333 8999999 9999998883 256888
Q ss_pred eeeecccccCCCccccccccCCCCCCCCCCCccccCCCccccCCcceeccCCcccccccccccccccCCCCcchh----h
Q 002201 71 AASWCTEVSCSPGEEVLKSKGSGSAGLKKPAVEVSRPPLVRTSRGRVQVLPSRFNDSVIENWRKESKRDDCYDDE----M 146 (954)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~srgr~~~~psrf~ds~~~~w~~~~~~~~~~~~~----~ 146 (954)
..+||.+.+ +.|||||++++||||+|+++.+|+++.+.+...+.. +
T Consensus 68 ~~sv~~~t~------------------------------~~~s~~~~~~~~s~~~~~~~~~~~~~~~~ke~~~~~~~~~~ 117 (1005)
T KOG1080|consen 68 SQSVCSDTS------------------------------KKSSRGRVRAVPSRFRDSNVGTWRSSTPSKEFETEGEILKV 117 (1005)
T ss_pred ceeeeecCC------------------------------CccccCCcccccccccccccccCCcccccccccCcceeeec
Confidence 888987732 789999999999999999999999999877776662 2
Q ss_pred hhhccccccccccccccccccCCCCcccc--cccccccccccccccCCCCCcccccccccccCCcccccccccccccccc
Q 002201 147 ECKKEKFSFKTPKSYNSNVKSKSKDDKFR--YYKSCKNGTLCEEEEGDEGGFSRSFDARKYSSSKSSLTSLHEQQFIDLD 224 (954)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (954)
.++.+++..-++- ..++.+...|+- =++.++.+.+| .+. +.++.. .+....
T Consensus 118 ~~~~~k~~~s~~~----~~~~~~~~s~~~~~~~~~~ss~~~~--~~~-----------~~~s~~----------~~~~i~ 170 (1005)
T KOG1080|consen 118 NSEFEEVKVSSGS----SKLHPSKDSKVFPRKDNPDSSEVSC--IDY-----------WEASQD----------RYDEIV 170 (1005)
T ss_pred ccccCCceeccCc----cccCcccccccCCcCCCCcccccch--hhh-----------hhcccC----------ccccee
Confidence 2333332211111 111222221000 00011111222 000 001100 000111
Q ss_pred cCCCCCCccccccccccccccCCCCCCCCcCCCCCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEE
Q 002201 225 NDEKSPPEDIVEFTSEEGLLNGERKDDGLYGPEDFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMF 304 (954)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~F 304 (954)
...-+ +..-...+.+.|.+++|.+||+||++.+++.|.|||.++++..+++..++..+.+...+|+|
T Consensus 171 ~~~~~-------------p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~d~~~~~~~~v~as~~~~~~~~~~ 237 (1005)
T KOG1080|consen 171 ANDGM-------------PLKSDASSKGVYKPEEFTVGDLVWAKSGRNEPPWPAIVIDPIRQAPRGVLASCLPVAACVMF 237 (1005)
T ss_pred eccCC-------------cCcccccccccccCcccccchhhhcccccCCcccccceeehhhcchhhhhccCcchhhhhee
Confidence 11111 12224556688999999999999999988999999999999989999999999988899999
Q ss_pred ccccCCCCCCcEEEeeCCceecCccchhhhcccccCCCCChhHHHHHHHHHHHHHhhhhHhhhhhhhhccCCCCCchhhh
Q 002201 305 FGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQSELNDCKPSDFQMALEEAFLADQGFTEKLIQDINMAAGNPTYDELVL 384 (954)
Q Consensus 305 FG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~q~~~~k~k~~~f~~AleEA~~a~~g~~e~~~~~~~~~~~~~~~~~s~~ 384 (954)
|+++...+..+|+|+.+.++.+|....+.++.|+.+...+...|++++++|.+|++++.+..++++.+..++...+.+..
T Consensus 238 ~~~s~~~~~~~~~~~r~~m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1005)
T KOG1080|consen 238 FGNSGVPTERDYAWVRRGMERPFSRPVRPFQDQTELKREKARSFEQALEEAGLAEQGNWKKDVDDAHLITGDSSATDSAL 317 (1005)
T ss_pred eeccCCccccchhhhhhccccccchhhhhccccccccccCccchhHHHHHhhccccccccccccchhhhcCCCccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred hhhccccCCCCCCCccccccc-------ccccCCCCccCCCCCCCCCCCCccccccccccccccccccHHhhhcCCcccc
Q 002201 385 KWGQEATGSNQDLDYPFIDKV-------SWAKNKDKRPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGI 457 (954)
Q Consensus 385 ~~~~e~~~~~~~~~~~~~~Q~-------~~~kck~c~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpi 457 (954)
.+..+...+.+..+-....+. .+.+--.-..|.+|..........+++..-....++|..|..+......|.+
T Consensus 318 ~~~~~~~~s~~~~~~~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~k~~~~~~~s~~~~g~ 397 (1005)
T KOG1080|consen 318 SEGGPSSFSELQKLHEKGFIKSHSSVFRKSDKIHVPSTSITKSPPPIAKSAKKTKALPPAQGLLCKECSDETKSNQTCGI 397 (1005)
T ss_pred hccccccccccccccccCCccccccccCCCccccccccccccCCCCchhhccccCcccccchhhhhhhhchhhccccccc
Confidence 777777777766555555553 2233445566777776666555555555544577999999999999999999
Q ss_pred ccccccCCCCCCeeeCCCCCceeeccccccccccccccC--CCcc---------------cCCccccccccccccccccc
Q 002201 458 CKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLG--GSEY---------------YCPACKAKFNFELSDSERGQ 520 (954)
Q Consensus 458 C~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~--~~~Y---------------~Cp~Cr~k~~~~~~~~~~~~ 520 (954)
|...+++.+..+|+.|+.|+-|+|+.|+.+....+.... ...| +|+.|+-.+...
T Consensus 398 ~~~~~~~~~~~d~~~~~~c~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~-------- 469 (1005)
T KOG1080|consen 398 CKRIWHSSDSGDWVRCDGCDVWIHARCDKISSEKFKYSSSGMHNYQTLNFPQEYTALNLSYCPKCKLTFDDL-------- 469 (1005)
T ss_pred cceecccccccceeeecccccceeeccCcccccccccccccccccccccchhhhhhhhccccchhheecccc--------
Confidence 999999999999999999999999999988776643321 1122 344443332111
Q ss_pred cccccccCCCCccCCCceeeeecccceeeeccccceeeeecccCCcccccchhhhccCCCcccccccch----hhhhhHh
Q 002201 521 RKVKSNKNNGQLVLPNNVTVLCSGVEGIYYPSLHLVVCKCGFCGTEKLALSDWERHTGSKLRNWRTSVR----MLQLAEY 596 (954)
Q Consensus 521 ~k~k~~~~~~~~~~p~~~~v~c~~veG~~~~~~~gi~ckC~~c~~~~~spsefE~h~G~r~K~wk~Sir----m~~l~~~ 596 (954)
...+. | +.++-+.+.+..+.-++..+++|++|++.+++.|+.+.+ +.++-+|
T Consensus 470 --------s~~~~-~---------------~~~~~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~~~~~~~~~~~l~~~ 525 (1005)
T KOG1080|consen 470 --------STDLS-P---------------AALARVFHMLRYSVKKKKFLSEWERHTGATAKIWKDSSRVKDELLPLPKW 525 (1005)
T ss_pred --------cccCC-c---------------chheeeecccCcchhhhhcccchhhhhcccccccccccccccccccchhh
Confidence 00000 1 122355677888888889999999999999999999988 3333333
Q ss_pred h-------hcccccCCCCCCCchHHHH--HHHHHHHhhccccccccCCCCcccccCCCccCCCCceEEcCCCCccccCcc
Q 002201 597 H-------ANTVVSAKPPKRPSMKERK--QKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQEC 667 (954)
Q Consensus 597 ~-------~~~~~~~~~~~~~~~k~~k--q~l~~~l~~~~~pv~~~~~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~C 667 (954)
. .++ .....|+.+..-.+. +.++..+...+.|...+|+.+.|.+|.+.+.+..|..+.|+.|.+++|+.|
T Consensus 526 ~~~~~~~~~~~-~~~~~p~s~~~~~~~s~~~~~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~ 604 (1005)
T KOG1080|consen 526 VESRGRSIMNT-YNSEKPKSIVLMGKTSVQRMLLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRSVHSEC 604 (1005)
T ss_pred hhhcccccccc-ccccCCcchhhhccchhhhhcCcccccchhhhcCCCcccccccccccccccceeeeeccccccCCCcc
Confidence 2 222 122223333333333 445556667788999999999999999999999999999999999999999
Q ss_pred ccCccccCCCceeEecccc------------CcCCCCcccCCCceeeccccCcCCceEeCCCCCcccccccCCCCCCCCc
Q 002201 668 YGARNVQDFTSWVFEIVYT------------EGGALKPTDVDSLWVHVTCAWFQPEVSFASDEKMEPALGILCIPSNSFV 735 (954)
Q Consensus 668 yGv~~~p~~~~W~C~~C~~------------~gGaLK~t~~~g~WvHv~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~ 735 (954)
||....+....|.|+.|.. ++|||++++ .+.|+|+.||+|.|++.+.+...|+|+.++..+++..+.
T Consensus 605 ~g~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~g~al~p~d-~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~ 683 (1005)
T KOG1080|consen 605 YGNLKSYDGTSWVCDSCETLDIKRSCCLCPVKGGALKPTD-EGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFL 683 (1005)
T ss_pred cccCCCCCCCcchhhccccccCCchhhhccccCcccCCCC-ccchhhhhchhccccccCCCccCCCCcccccccCccchh
Confidence 9999998888999999995 899999998 999999999999999999999999999999999999999
Q ss_pred eeEeeeccCCCeeeecCCcCcccchhhhhhcCCeEEEEeeccCCccccceEEeCCCCCCCCCCceeeeeCCcccchhhHh
Q 002201 736 KICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGRQITKMVSYCAYHRAPNPDTFLIIHTPLGVFSAKSL 815 (954)
Q Consensus 736 ~~C~iC~~~~Ga~IqC~~C~~aFHv~CA~~aGl~me~~~~~~~g~~~~~~~~yC~~H~~~~~d~v~~~~~~~G~~s~k~~ 815 (954)
..|.+ .|.|.||..|...||.+||..+|+.++...++..+.+.+...- |..+.++.++.++++.+.+..+.+
T Consensus 684 ~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~d~~l~~~~~~~~~~~~~~ 755 (1005)
T KOG1080|consen 684 KICFI----HGSCRQCCKCETGSHAMCASRAGYIMEAVSLEEVSQQTTSYVK----EDGPGPDSVLKVNTPSGKFGAENL 755 (1005)
T ss_pred hhccc----cccccccchhhhcceehhhcCccChhhhhhhhhhhhhhhhhhh----hccCCcccceeecCccccccccch
Confidence 98888 6889999999999999999999999987766665554433322 888899999999999999999877
Q ss_pred hhccc--cCCcccccccccc--ccc--ccccccCcCCchhHHHHhhhhhhccccchhhHhhhcccccccccCchhhhhhh
Q 002201 816 AQNKK--RSGSRLISSSRTK--VEE--VTAVESTEIEPFSAARCRVFKRLNNNKKRAEEEATAHKVGGACHHSLATMQSL 889 (954)
Q Consensus 816 ~~n~k--~~~~rl~s~~R~~--lpe--~~~~e~~~~~p~~~aR~~~~~R~~~~~kr~~~~~i~~~~~g~~~~~~~~i~~~ 889 (954)
.++++ ..+.+....++.. +++ ...+...++++.+.+|++.+.|..+..++.......+...|...|......++
T Consensus 756 ~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~~~~~~~~~s~~~~~s~~~s~~~s~~~rl 835 (1005)
T KOG1080|consen 756 SQNKKSRTDGVRLVLTYKEYAPLREIKSRAEPLNRIDFSSEARCRSESRSDNSKSPLAEESESDITSGGSSHDLSAEERL 835 (1005)
T ss_pred hhhhhccccccccccccccccccccchhcccCCcccCccccccccchhhcccccccccccccccccccccccchhHHhhh
Confidence 77665 4444444444332 222 22233456788888999999988878888877777777777777777776666
Q ss_pred hhcc----------------------cccCCceEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHHHHHHhhh
Q 002201 890 NTFR----------------------RTEHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERDLCCS 947 (954)
Q Consensus 890 ~~~~----------------------~~~~~~~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~Re~~y~~~ 947 (954)
++++ +.++++|.|++|+||||||||+++|.+|||||||+||+||+.+||+||++|+.-
T Consensus 836 ~q~rl~a~~~~~~~~~~~~~~~~~~~~~rkk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~ 915 (1005)
T KOG1080|consen 836 NQFRLSASFTASFILDEAEVLRYNQLKFRKKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERM 915 (1005)
T ss_pred HHHHhhhhcccccccchHHHHHHHHHhhhhhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhcc
Confidence 6554 556788999999999999999999999999999999999999999999999985
Q ss_pred c-ccc
Q 002201 948 F-SRS 951 (954)
Q Consensus 948 ~-~~~ 951 (954)
. ++|
T Consensus 916 gi~~s 920 (1005)
T KOG1080|consen 916 GIGDS 920 (1005)
T ss_pred Ccccc
Confidence 4 443
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.97 E-value=1.2e-31 Score=305.29 Aligned_cols=156 Identities=37% Similarity=0.783 Sum_probs=141.9
Q ss_pred CCcccccCCCccCCCCceEEcC--CCCccccCccccCccccCCCceeEecccc--------------CcCCCCcccCCCc
Q 002201 636 TERCAVCRWVEDWDYNKIIICN--RCQIAVHQECYGARNVQDFTSWVFEIVYT--------------EGGALKPTDVDSL 699 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~--~C~~avH~~CyGv~~~p~~~~W~C~~C~~--------------~gGaLK~t~~~g~ 699 (954)
..-|+||-+...|.+|.||+|| .|.++|||.|||+..+|. |.|||+.|+. ++||||+|| +|-
T Consensus 5 VGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPt-GpWfCrKCesqeraarvrCeLCP~kdGALKkTD-n~G 82 (900)
T KOG0956|consen 5 VGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPT-GPWFCRKCESQERAARVRCELCPHKDGALKKTD-NGG 82 (900)
T ss_pred ccceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCC-CchhhhhhhhhhhhccceeecccCcccceeccc-CCC
Confidence 3469999999999999999998 599999999999999999 9999999987 889999998 899
Q ss_pred eeeccccCcCCceEeCCCCCcccccccCCCCCCCCceeEeeecc-------CCCeeeecC--CcCcccchhhhhhcCCeE
Q 002201 700 WVHVTCAWFQPEVSFASDEKMEPALGILCIPSNSFVKICVICKQ-------IHGSCTQCC--KCSTYYHAMCASRAGYRM 770 (954)
Q Consensus 700 WvHv~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~~~C~iC~~-------~~Ga~IqC~--~C~~aFHv~CA~~aGl~m 770 (954)
|+||+|||+||||.|.|..+||||. +..||.+||...|+||.. ..|+||+|. .|.++|||+||+.+||..
T Consensus 83 WAHVVCALYIPEVrFgNV~TMEPIi-Lq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLC 161 (900)
T KOG0956|consen 83 WAHVVCALYIPEVRFGNVHTMEPII-LQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLC 161 (900)
T ss_pred ceEEEEEeeccceeeccccccccee-eccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccce
Confidence 9999999999999999999999976 899999999999999985 379999997 699999999999999987
Q ss_pred EEEeeccCCccccceEEeCCCCCCCCC
Q 002201 771 ELHCLEKNGRQITKMVSYCAYHRAPNP 797 (954)
Q Consensus 771 e~~~~~~~g~~~~~~~~yC~~H~~~~~ 797 (954)
|- +.++.+++++..||.+|..+.+
T Consensus 162 EE---~gn~~dNVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 162 EE---EGNISDNVKYCGYCKYHFSKLK 185 (900)
T ss_pred ec---cccccccceechhHHHHHHHhh
Confidence 63 3355567899999999996543
No 3
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.96 E-value=1.1e-30 Score=318.17 Aligned_cols=159 Identities=40% Similarity=0.777 Sum_probs=147.2
Q ss_pred CCCcccccCCCccCCCCceEEcCCCCccccCccccCccccCCCceeEecccc-------------CcCCCCcccCCCcee
Q 002201 635 TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT-------------EGGALKPTDVDSLWV 701 (954)
Q Consensus 635 ~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~-------------~gGaLK~t~~~g~Wv 701 (954)
.+.+|+||.+++..+.|.+|+||+|+++|||+|||++.+|+ |.|+|+.|.. .+||||+|+ +|+|+
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipe-g~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~-dgrw~ 295 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPE-GQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTD-DGRWA 295 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCC-CcEeehhhccCcCcccceEeccCCCCcceecc-CCcee
Confidence 58899999999999999999999999999999999999999 9999999998 899999997 89999
Q ss_pred eccccCcCCceEeCCCCCcccccccCCCCCCCCceeEeeeccCC-CeeeecC--CcCcccchhhhhhcCCeEEEEeeccC
Q 002201 702 HVTCAWFQPEVSFASDEKMEPALGILCIPSNSFVKICVICKQIH-GSCTQCC--KCSTYYHAMCASRAGYRMELHCLEKN 778 (954)
Q Consensus 702 Hv~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~~~C~iC~~~~-Ga~IqC~--~C~~aFHv~CA~~aGl~me~~~~~~~ 778 (954)
|++||+|+|++.|.+...++||.+|..|++.||++.|.+|++.+ |+||||+ +|.+|||++||+.+|++|.+..+...
T Consensus 296 Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~agl~m~~~~~~~~ 375 (1051)
T KOG0955|consen 296 HVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRAGLYMKSNTVKEL 375 (1051)
T ss_pred eeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhcCceEeecccccc
Confidence 99999999999999999999999999999999999999999998 9999998 79999999999999999996544332
Q ss_pred Cc----cccceEEeCCCCCCC
Q 002201 779 GR----QITKMVSYCAYHRAP 795 (954)
Q Consensus 779 g~----~~~~~~~yC~~H~~~ 795 (954)
+. +.+...+||+.|.++
T Consensus 376 s~~~~s~~v~~~syC~~H~pp 396 (1051)
T KOG0955|consen 376 SKNGTSQSVNKISYCDKHTPP 396 (1051)
T ss_pred cccccccccceeeeccCCCCc
Confidence 21 235789999999986
No 4
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=99.96 E-value=5.2e-31 Score=291.42 Aligned_cols=169 Identities=33% Similarity=0.633 Sum_probs=148.8
Q ss_pred ccccccccC-CCCcccccCCCccCCCCceEEcCCCCccccCccccCccccCCCceeEecccc-------------CcCCC
Q 002201 626 KYEPVYAKW-TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT-------------EGGAL 691 (954)
Q Consensus 626 ~~~pv~~~~-~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~-------------~gGaL 691 (954)
.|+|+.+.. -++.|.+|...+.++.|.|++||+|.++|||+|||++.+|+ |.|+|+.|.. ..||+
T Consensus 182 ~vepi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~pe-G~WlCrkCi~~~~~i~~C~fCps~dGaF 260 (669)
T COG5141 182 HVEPIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPE-GFWLCRKCIYGEYQIRCCSFCPSSDGAF 260 (669)
T ss_pred cccccCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCc-chhhhhhhcccccceeEEEeccCCCCce
Confidence 367777655 47899999999999999999999999999999999999999 9999999988 78999
Q ss_pred CcccCCCceeeccccCcCCceEeCCCCCcccccccCCCCCCCCceeEeeeccCCCeeeecC--CcCcccchhhhhhcCCe
Q 002201 692 KPTDVDSLWVHVTCAWFQPEVSFASDEKMEPALGILCIPSNSFVKICVICKQIHGSCTQCC--KCSTYYHAMCASRAGYR 769 (954)
Q Consensus 692 K~t~~~g~WvHv~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~~~C~iC~~~~Ga~IqC~--~C~~aFHv~CA~~aGl~ 769 (954)
|.|+ +|.|+|+.||+|+|++.|.+...++||.||.+++..+|++.|.||+..+|+||||. +|.++||++||++||+.
T Consensus 261 kqT~-dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag~f 339 (669)
T COG5141 261 KQTS-DGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAGYF 339 (669)
T ss_pred eecc-CCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcchh
Confidence 9997 89999999999999999999999999999999999999999999999999999997 79999999999999998
Q ss_pred EEEEeeccCCc-cccceEEeCCCCCCCCC
Q 002201 770 MELHCLEKNGR-QITKMVSYCAYHRAPNP 797 (954)
Q Consensus 770 me~~~~~~~g~-~~~~~~~yC~~H~~~~~ 797 (954)
+.- ....+|. +...+-.||.+|.++.-
T Consensus 340 ~~~-~~s~n~~s~~id~e~~c~kh~p~gy 367 (669)
T COG5141 340 DLN-IYSHNGISYCIDHEPLCRKHYPLGY 367 (669)
T ss_pred hhh-hhcccccceeecchhhhcCCCCcch
Confidence 752 1112332 23456678999987543
No 5
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=99.96 E-value=2.3e-30 Score=297.41 Aligned_cols=156 Identities=38% Similarity=0.788 Sum_probs=144.7
Q ss_pred CCCcccccCCCccCCCCceEEcCCCCccccCccccCccccCCCceeEecccc-----------CcCCCCcccCCCceeec
Q 002201 635 TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT-----------EGGALKPTDVDSLWVHV 703 (954)
Q Consensus 635 ~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~-----------~gGaLK~t~~~g~WvHv 703 (954)
++..|+||...+.++.|+||+||.|++.||+.|||+..+|+ ++|+|+.|.. +||+||++...-+|+|+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~-gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPE-GPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecCC-CCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 67899999999999999999999999999999999999999 9999999998 99999999877799999
Q ss_pred cccCcCCceEeCCCCCcccccccCCCCCCCCceeEeeeccCCCeeeecC--CcCcccchhhhhhcCCeEEEEeeccCCcc
Q 002201 704 TCAWFQPEVSFASDEKMEPALGILCIPSNSFVKICVICKQIHGSCTQCC--KCSTYYHAMCASRAGYRMELHCLEKNGRQ 781 (954)
Q Consensus 704 ~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~~~C~iC~~~~Ga~IqC~--~C~~aFHv~CA~~aGl~me~~~~~~~g~~ 781 (954)
.||||+|||+|.+...|+||..|..|+..||.+.|.+|+.+.|+||||. .|.++||+.||+.+|+.|.+...+ .+
T Consensus 349 sCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~---~D 425 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKE---ND 425 (893)
T ss_pred eeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhhhhcCCeeeeeecc---CC
Confidence 9999999999999999999999999999999999999999999999998 799999999999999999875332 23
Q ss_pred ccceEEeCCCCCC
Q 002201 782 ITKMVSYCAYHRA 794 (954)
Q Consensus 782 ~~~~~~yC~~H~~ 794 (954)
...+..||.+|..
T Consensus 426 ~v~~~s~c~khs~ 438 (893)
T KOG0954|consen 426 EVKFKSYCSKHSD 438 (893)
T ss_pred chhheeecccccc
Confidence 4577888888875
No 6
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.91 E-value=3.7e-25 Score=204.97 Aligned_cols=93 Identities=45% Similarity=0.794 Sum_probs=79.2
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCC-CCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhccc
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCI-PDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQ 337 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~-~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~q 337 (954)
+.+||||||||+ +||||||+|++|. .+|+++....+ .+.+||+||| ++||+||.+++|+||.+++.++..+
T Consensus 1 ~~~GdlVWaK~~-g~pwWPa~V~~~~-~~p~~~~~~~~~~~~~~V~Ffg------s~~y~Wv~~~~l~pf~e~~~~~~~~ 72 (95)
T cd05838 1 PLYGDIVWAKLG-NFRWWPAIICDPR-EVPPNIQVLRHCIGEFCVMFFG------THDYYWVHRGRVFPYQEGDKGFKEQ 72 (95)
T ss_pred CCcCCEEEEECC-CCCCCCeEEcChh-hcChhHhhccCCCCeEEEEEeC------CCCEEEeccccccchhhhhhhhhhh
Confidence 468999999998 7999999999998 88886644433 6789999999 9999999999999999998888665
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhh
Q 002201 338 SELNDCKPSDFQMALEEAFLADQG 361 (954)
Q Consensus 338 ~~~~k~k~~~f~~AleEA~~a~~g 361 (954)
++. .+...|++||+||.+|.++
T Consensus 73 ~~~--~~~~~f~~AleEA~~~~~~ 94 (95)
T cd05838 73 TKS--YLAKRFRKALEEASLAFKG 94 (95)
T ss_pred hhh--hhHHHHHHHHHHHHHHhhc
Confidence 533 4556999999999998765
No 7
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.86 E-value=4.5e-22 Score=181.21 Aligned_cols=82 Identities=28% Similarity=0.553 Sum_probs=68.6
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCC-CCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhccc
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCI-PDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQ 337 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~-~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~q 337 (954)
|.+||||||||+ +||||||+|++|. ..+.+... .+.++|+||| +++|+||.+++|+||.+++++|..
T Consensus 1 f~~GDlVwaK~~-g~P~WPa~V~~~~----~~~~~~~~~~~~~~V~FFG------~~~~~wv~~~~l~pF~~~~~~~~~- 68 (86)
T cd05836 1 LKLGDLVWAKMK-GFPPWPGRIVKPP----KDLKKPRGKAKCFFVFFFG------SENHAWIKEENIKPYHEHKEEMIK- 68 (86)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEechh----hhcccccCCCCeEEEEEeC------CCCEEEECHHhCeechhhHHHHhc-
Confidence 789999999997 7999999999986 33333323 5789999999 999999999999999999999963
Q ss_pred ccCCCCChhHHHHHHHHHH
Q 002201 338 SELNDCKPSDFQMALEEAF 356 (954)
Q Consensus 338 ~~~~k~k~~~f~~AleEA~ 356 (954)
.++.+.|++||+|+.
T Consensus 69 ----~~k~~~F~~Av~~ie 83 (86)
T cd05836 69 ----LNKGARFQQAVDAIE 83 (86)
T ss_pred ----ccchHHHHHHHHHHH
Confidence 233458999999993
No 8
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.85 E-value=1.4e-21 Score=176.88 Aligned_cols=80 Identities=33% Similarity=0.522 Sum_probs=68.6
Q ss_pred CCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhccc
Q 002201 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQ 337 (954)
Q Consensus 258 ~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~q 337 (954)
+|.+||||||||. +||||||+|+++. .. ...++.++|+||| +++||||..++|+||.++.++|..+
T Consensus 2 ~f~~GdlVwaK~k-Gyp~WPa~I~~~~-~~------~~~~~~~~V~FfG------t~~~a~v~~~~l~pf~~~~~~~~~~ 67 (83)
T cd05834 2 QFKAGDLVFAKVK-GYPAWPARVDEPE-DW------KPPGKKYPVYFFG------THETAFLKPEDLFPYTENKKKFGKP 67 (83)
T ss_pred CCCCCCEEEEecC-CCCCCCEEEeccc-cc------CCCCCEEEEEEeC------CCCEeEECHHHceecccchhhhccc
Confidence 6999999999996 7999999999987 32 3346789999999 9999999999999999998887543
Q ss_pred ccCCCCChhHHHHHHHHHH
Q 002201 338 SELNDCKPSDFQMALEEAF 356 (954)
Q Consensus 338 ~~~~k~k~~~f~~AleEA~ 356 (954)
.+...|++||+|+.
T Consensus 68 -----~k~k~F~~Av~eie 81 (83)
T cd05834 68 -----KKRKGFNEAVWEIE 81 (83)
T ss_pred -----cchHHHHHHHHHHh
Confidence 33458999999994
No 9
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.85 E-value=8.9e-22 Score=179.71 Aligned_cols=86 Identities=27% Similarity=0.524 Sum_probs=71.5
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhcccc
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQS 338 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~q~ 338 (954)
|.+||||||||+ +||||||+|+++. ..+.. ....+.++|+||| +++|+||.+++|+||.++.++|...
T Consensus 1 f~vGDlVWaK~k-g~pwWP~~V~~~~-~~~~~---~~~~~~~~V~fFG------s~~~a~v~~~~l~pf~e~~~~f~~~- 68 (87)
T cd05835 1 FNVGDLVWGKIK-GFPWWPGRVVSIT-VTSKR---PPVVGMRWVTWFG------SGTFSEVSVDKLSPFSEFFKAFSRY- 68 (87)
T ss_pred CCCCCEEEEecC-CCCCCCeEEechh-hcccc---cCCCCeEEEEEeC------CCCEeEECHHHCcChhHhHHHHhhh-
Confidence 789999999997 7999999999987 43322 3447889999999 9999999999999999998887432
Q ss_pred cCCCCChhHHHHHHHHHHHH
Q 002201 339 ELNDCKPSDFQMALEEAFLA 358 (954)
Q Consensus 339 ~~~k~k~~~f~~AleEA~~a 358 (954)
++.+.+.|++||+||.++
T Consensus 69 --~~~k~~~f~~Ai~eA~e~ 86 (87)
T cd05835 69 --NRKKKGLYKKAIYEALEV 86 (87)
T ss_pred --hhhhhHHHHHHHHHHHHc
Confidence 333457999999999664
No 10
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=99.85 E-value=2.5e-21 Score=176.35 Aligned_cols=86 Identities=34% Similarity=0.721 Sum_probs=74.1
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhcccc
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQS 338 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~q~ 338 (954)
|.+|||||||++ +||||||+|+++. ..+..+++....+.++|+||| +++|+||..++|+||.++....
T Consensus 1 f~~GdlVwaK~~-g~pwWPa~V~~~~-~~~~~~~~~~~~~~~~V~Ffg------~~~~~wv~~~~l~pf~~~~~~~---- 68 (87)
T cd05162 1 FRPGDLVWAKMK-GYPWWPALVVDPP-KDSKKAKKKAKEGKVLVLFFG------DKTFAWVGAERLKPFTEHKESE---- 68 (87)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEcccc-ccchhhhccCCCCEEEEEEeC------CCcEEEeCccceeeccchHHhh----
Confidence 789999999997 7999999999999 778877766678899999999 9999999999999999986552
Q ss_pred cCCCCChhHHHHHHHHHHH
Q 002201 339 ELNDCKPSDFQMALEEAFL 357 (954)
Q Consensus 339 ~~~k~k~~~f~~AleEA~~ 357 (954)
.++.+...|++||+||.+
T Consensus 69 -~~~~k~~~f~~A~~eA~~ 86 (87)
T cd05162 69 -AKQSKRKGFKKAYDEALE 86 (87)
T ss_pred -ccCCccHHHHHHHHHHHh
Confidence 233445699999999953
No 11
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=99.84 E-value=2.3e-22 Score=223.52 Aligned_cols=152 Identities=28% Similarity=0.634 Sum_probs=128.6
Q ss_pred cccccCCCccCCCCceEEcCCCCccccCccccCccc---cC------CCceeEecccc------------CcCCCCcccC
Q 002201 638 RCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNV---QD------FTSWVFEIVYT------------EGGALKPTDV 696 (954)
Q Consensus 638 ~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~---p~------~~~W~C~~C~~------------~gGaLK~t~~ 696 (954)
+|+||......+-|.+|+|+.|++.||..|||+... +. ..+|||..|.. ++|++|.|++
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetDi 200 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETDI 200 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccch
Confidence 899999888888999999999999999999999832 22 15799999998 8899999985
Q ss_pred CCceeeccccCcCCceEeCCCCCcccccccCCCCCCCCc-eeEeeecc----CCCeeeecC--CcCcccchhhhhhcCCe
Q 002201 697 DSLWVHVTCAWFQPEVSFASDEKMEPALGILCIPSNSFV-KICVICKQ----IHGSCTQCC--KCSTYYHAMCASRAGYR 769 (954)
Q Consensus 697 ~g~WvHv~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~-~~C~iC~~----~~Ga~IqC~--~C~~aFHv~CA~~aGl~ 769 (954)
|+|||++|||++|+|.|++...+.+|. +..+....|. ..|..|.. ..|.||.|. -|..+|||+||+.+|+.
T Consensus 201 -grWvH~iCALYvpGVafg~~~~l~~Vt-l~em~ysk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~GlL 278 (707)
T KOG0957|consen 201 -GRWVHAICALYVPGVAFGQTHTLCGVT-LEEMDYSKFGAKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKLGLL 278 (707)
T ss_pred -hhHHHHHHHhhcCcccccccccccccc-HHHhhhhhhccchhccccchhhhhcceeeeccchhhhhhhhhhHHhhhcce
Confidence 799999999999999999999998865 4444455554 58999984 479999997 69999999999999999
Q ss_pred EEEEeeccCCccccceEEeCCCCCC
Q 002201 770 MELHCLEKNGRQITKMVSYCAYHRA 794 (954)
Q Consensus 770 me~~~~~~~g~~~~~~~~yC~~H~~ 794 (954)
++.+..++ -...+++||..|..
T Consensus 279 vea~~e~D---iAdpfya~CK~Ht~ 300 (707)
T KOG0957|consen 279 VEATDEND---IADPFYAFCKKHTN 300 (707)
T ss_pred eecccccc---chhhHHHHHHhhcc
Confidence 98654333 23468899999986
No 12
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=99.82 E-value=4.4e-21 Score=173.44 Aligned_cols=86 Identities=42% Similarity=0.773 Sum_probs=70.5
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhcccc
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQS 338 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~q~ 338 (954)
|.+|||||||++ +||||||+|+++. ..+. +....+.++|+||| +++|+||+.++|.||.++.+.+...
T Consensus 1 f~~GdlVWaK~~-g~pwWPa~V~~~~-~~~~---~~~~~~~~~V~Ffg------~~~~~wv~~~~i~~f~~~~~~~~~~- 68 (86)
T PF00855_consen 1 FRPGDLVWAKLK-GYPWWPARVCDPD-EKSK---KKRKDGHVLVRFFG------DNDYAWVKPSNIKPFSEFKEKLKKK- 68 (86)
T ss_dssp -STTEEEEEEET-TSEEEEEEEEECC-HCTS---CSSSSTEEEEEETT------TTEEEEEEGGGEEECCHHHHHHHHH-
T ss_pred CCCCCEEEEEeC-CCCCCceEEeecc-cccc---cCCCCCEEEEEecC------CCCEEEECHHHhhChhhhHHHHHHh-
Confidence 789999999997 7999999999997 4333 35557889999999 8899999999999999888777654
Q ss_pred cCCCCChhHHHHHHHHHHHH
Q 002201 339 ELNDCKPSDFQMALEEAFLA 358 (954)
Q Consensus 339 ~~~k~k~~~f~~AleEA~~a 358 (954)
.+.+...|++||+||.+|
T Consensus 69 --~~~k~~~~~~Ai~eA~~~ 86 (86)
T PF00855_consen 69 --KKKKRKSFRKAIEEAEEA 86 (86)
T ss_dssp --HHHHSHHHHHHHHHHHHH
T ss_pred --hccchHHHHHHHHHHHhC
Confidence 122336899999999654
No 13
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.82 E-value=1.4e-20 Score=173.70 Aligned_cols=87 Identities=33% Similarity=0.545 Sum_probs=71.9
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhc--c-CCCCeEEEEEccccCCCCCCcEEEeeCCceecCcc-chhhh
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLR--S-CIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVD-FVDRF 334 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~--~-~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e-~~d~f 334 (954)
|.+||||||||+ +||||||+|+++. .+|..+++ . ...+.++|+||| +++|+||.+.+|+||.+ ..+.|
T Consensus 1 f~~GDlVwaK~~-GyPwWPA~V~~~~-~~p~~~l~~~~~~~~~~~~V~FFg------~~~~~Wv~~~~l~pl~~~~~~~~ 72 (93)
T cd05840 1 FQPGDRVLAKVK-GFPAWPAIVVPEE-MLPDSVLKGKKKKNKRTYPVMFFP------DGDYYWVPNKDLKPLTEEKIAKF 72 (93)
T ss_pred CCCCCEEEEeCC-CCCCCCEEECChH-HCCHHHHhcccCCCCCeEEEEEeC------CCcEEEEChhhcccCCHHHHHHH
Confidence 789999999997 7999999999999 89999873 3 347889999999 99999999999999994 46666
Q ss_pred cccccCCCCChhHHHHHHHHHH
Q 002201 335 QEQSELNDCKPSDFQMALEEAF 356 (954)
Q Consensus 335 ~~q~~~~k~k~~~f~~AleEA~ 356 (954)
..... .+...+.+|.+.|.
T Consensus 73 l~~~~---~k~k~l~~ay~~A~ 91 (93)
T cd05840 73 LKKPK---RKDKELIKAYKAAK 91 (93)
T ss_pred hhcCC---CCCHHHHHHHHHhc
Confidence 55333 23357888888883
No 14
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.80 E-value=4.6e-20 Score=174.86 Aligned_cols=107 Identities=41% Similarity=0.794 Sum_probs=97.3
Q ss_pred eEeccccCcCCCCcccCCCceeeccccCcCCceEeCCCCCcccccccCCCCCCCCceeEeeeccCCCeeeecCC--cCcc
Q 002201 680 VFEIVYTEGGALKPTDVDSLWVHVTCAWFQPEVSFASDEKMEPALGILCIPSNSFVKICVICKQIHGSCTQCCK--CSTY 757 (954)
Q Consensus 680 ~C~~C~~~gGaLK~t~~~g~WvHv~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~~~C~iC~~~~Ga~IqC~~--C~~a 757 (954)
.|..|...+||||+|. ++.|||++||+|+|++.|.+...++|+. +..++.++++..|.||++..|++|+|.. |.++
T Consensus 2 ~C~lC~~~~Galk~t~-~~~WvHv~Cal~~~~~~~~~~~~~~~v~-~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~ 79 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTS-DGQWVHVLCALWIPEVIFNNGESMEPVD-ISNIPPSRFKLKCSICGKSGGACIKCSHPGCSTA 79 (110)
T ss_pred ccEeCCCCCCcccCcc-CCcEEEeEccceeCccEEeechhcCccc-ceeecchhcCCcCcCCCCCCceeEEcCCCCCCcC
Confidence 3777888999999997 8999999999999999999999999988 9999999999999999999999999985 9999
Q ss_pred cchhhhhhcCCeEEEEeeccCCccccceEEeCCCC
Q 002201 758 YHAMCASRAGYRMELHCLEKNGRQITKMVSYCAYH 792 (954)
Q Consensus 758 FHv~CA~~aGl~me~~~~~~~g~~~~~~~~yC~~H 792 (954)
||++||+.+|+.+++...+. ...+++||+.|
T Consensus 80 fH~~CA~~~g~~~~~~~~~~----~~~~~~~C~~H 110 (110)
T PF13832_consen 80 FHPTCARKAGLYFEIENEED----NVQFIAYCPKH 110 (110)
T ss_pred CCHHHHHHCCCeEEeeecCC----CceEEEECCCC
Confidence 99999999999998764332 46789999998
No 15
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=99.77 E-value=8.2e-19 Score=166.95 Aligned_cols=94 Identities=24% Similarity=0.383 Sum_probs=68.1
Q ss_pred CCCCCCEEEEecCCCCCcccEEEeCCCCCCChhh---hccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhh
Q 002201 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVV---LRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRF 334 (954)
Q Consensus 258 ~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v---~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f 334 (954)
.|.+||||||||+ +||||||+|+++. .++..+ .....++.|+|+||| ++++||||+.++|+||.+..+..
T Consensus 2 ~~~~GdlVWaK~~-g~PwWPa~V~~~~-~~~~~~~~~~~~~~~~~~~V~FFG-----~~~~~aWv~~~~l~pf~~~~~~~ 74 (110)
T cd05837 2 KYQVGDLVWAKVS-GYPWWPCMVCSDP-LLGTYTKTKRNKRKPRQYHVQFFG-----DNPERAWISEKSLKPFKGSKQFE 74 (110)
T ss_pred CCCCCCEEEEeCC-CCCCCCEEEeccc-ccchhhhhhhccCCCCeEEEEEcC-----CCCCEEEecHHHccccCCchhhh
Confidence 5899999999997 7999999999766 666665 334457889999999 55699999999999999885332
Q ss_pred ----cccccCCCCChhHHHHHHHHHHHH
Q 002201 335 ----QEQSELNDCKPSDFQMALEEAFLA 358 (954)
Q Consensus 335 ----~~q~~~~k~k~~~f~~AleEA~~a 358 (954)
......+....+.+++|..+|..|
T Consensus 75 ~~~~~~~~~~K~~~~~~~~~a~~~~~~~ 102 (110)
T cd05837 75 SEKGEKFKVRKPNIKKARQKADIAIMQA 102 (110)
T ss_pred hhhhhhhhccCCcchhHHHHHHHHHHHH
Confidence 111112222223566666666554
No 16
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=99.75 E-value=1.1e-18 Score=149.98 Aligned_cols=62 Identities=39% Similarity=0.957 Sum_probs=55.5
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhc-cCCCCeEEEEEccccCCCCCCcEEEeeCCceecCc
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLR-SCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFV 328 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~-~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~ 328 (954)
|.+||||||||+ +||||||+|+++. .+++.+++ ....+.++|+||| +++||||...+|+||.
T Consensus 1 f~~GdlVwaK~~-G~p~WPa~V~~~~-~~~~~~~~~~~~~~~~~V~Ffg------~~~~awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKMK-GFPWWPALVVSPK-ETPDNIRKRKRFENLYPVLFFG------DKDTAWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEECC-CCCCCCeEEcCcc-cCChhHhhccCCCCEEEEEEeC------CCCEEEECccceeeCC
Confidence 789999999997 7999999999999 77877765 4448899999999 9999999999999984
No 17
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.75 E-value=3.1e-18 Score=154.23 Aligned_cols=78 Identities=31% Similarity=0.530 Sum_probs=65.1
Q ss_pred CCCCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhc
Q 002201 256 PEDFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQ 335 (954)
Q Consensus 256 ~~~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~ 335 (954)
-..+.+||||||||. |||||||+|+++. .+.+.|+||| .++++|||...+|+||.++++++
T Consensus 4 ~pc~~p~dLVwAK~k-Gyp~WPAkV~~~~------------~~~~~V~FFG-----~t~~~a~v~~~~i~~~~~~~~~~- 64 (83)
T cd05841 4 EPCRPPHELVWAKLK-GFPYWPAKVMRVE------------DNQVDVRFFG-----GQHDRAWIPSNNIQPISTEIPQQ- 64 (83)
T ss_pred cccCCCCCEEEEeCC-CCCCCCEEEeecC------------CCeEEEEEcC-----CCCCeEEEehHHeeehhhhhhhh-
Confidence 356889999999996 6999999999875 2569999999 89999999999999999886544
Q ss_pred ccccCCCCChhHHHHHHHHHH
Q 002201 336 EQSELNDCKPSDFQMALEEAF 356 (954)
Q Consensus 336 ~q~~~~k~k~~~f~~AleEA~ 356 (954)
..+.+...|++||+||.
T Consensus 65 ----~~~~k~~~f~~A~~Eie 81 (83)
T cd05841 65 ----LVKKRSRGFNKAMDELE 81 (83)
T ss_pred ----ccccccHHHHHHHHHHH
Confidence 22333458999999993
No 18
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.66 E-value=1.5e-16 Score=150.58 Aligned_cols=92 Identities=25% Similarity=0.498 Sum_probs=68.5
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCCh--------hhh-------ccCCCCeEEEEEccccCCCCCCcEEEeeCCc
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPD--------VVL-------RSCIPDAACVMFFGHCGDVNQRDYAWVKRGL 323 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~--------~v~-------~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~ 323 (954)
+.+||||||||. +||||||+|+||.+..+. .++ .......++|.||+ ++++|+||++..
T Consensus 1 ~~pg~lVwaK~~-g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd-----~~~s~~Wv~~~~ 74 (111)
T cd05839 1 LEPLTLVWAKCR-GYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFD-----NKRTWQWLPGDK 74 (111)
T ss_pred CCCcCEeeeeec-CCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEec-----CCCcceecCHHH
Confidence 468999999995 799999999999854432 121 22235679999999 568999999999
Q ss_pred eecCccchhhhcccccCCCCChhHHHHHHHHHHHH
Q 002201 324 IFPFVDFVDRFQEQSELNDCKPSDFQMALEEAFLA 358 (954)
Q Consensus 324 i~Pf~e~~d~f~~q~~~~k~k~~~f~~AleEA~~a 358 (954)
|.||.+. +.+ ...++..+++...++||+.|+..
T Consensus 75 l~pl~~~-~~~-D~~kl~~~rk~~~rk~~~~Ay~~ 107 (111)
T cd05839 75 LEPLGVD-ETL-DKLKLKEGRKPSIRKAVQKAYDD 107 (111)
T ss_pred Ccccccc-hhh-hhhhhhhccCHHHHHHHHHHHHH
Confidence 9999976 222 22345566667788888888654
No 19
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.62 E-value=2.1e-16 Score=141.66 Aligned_cols=75 Identities=27% Similarity=0.462 Sum_probs=61.4
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCC-cEEEeeCCceecCccchhhhccc
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQR-DYAWVKRGLIFPFVDFVDRFQEQ 337 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~-dyaWv~~~~i~Pf~e~~d~f~~q 337 (954)
|.+|||||||+. +||||||+|.++. .. .+.+.|+||| ++ +++|+..+.|+||.++.+..++|
T Consensus 1 f~~gdlVWaK~~-g~P~WPa~I~~~~-~~---------~~k~~V~FfG------~~~~~a~~~~~~l~p~~~~~~~~ek~ 63 (80)
T cd06080 1 FEKNDLVWAKIQ-GYPWWPAVIKSIS-RK---------KQKARVNFIG------DNMQSEKKGIRVVKRWLKHFDCTEKQ 63 (80)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEeeec-CC---------CCEEEEEEeC------CCCceeccchhhcccccccHHHHHHH
Confidence 789999999997 7999999999876 21 5679999999 88 99999999999999998888776
Q ss_pred ccCCCCChhHHHHHHHHH
Q 002201 338 SELNDCKPSDFQMALEEA 355 (954)
Q Consensus 338 ~~~~k~k~~~f~~AleEA 355 (954)
...++ .+++++.|
T Consensus 64 ~~~~k-----~ke~~~~a 76 (80)
T cd06080 64 KLTNK-----AKESYEQA 76 (80)
T ss_pred HHHHH-----HHHHHHHH
Confidence 65554 33555444
No 20
>KOG1904 consensus Transcription coactivator [Transcription]
Probab=99.34 E-value=8.5e-13 Score=152.25 Aligned_cols=90 Identities=28% Similarity=0.452 Sum_probs=73.5
Q ss_pred CCCCCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhh
Q 002201 255 GPEDFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRF 334 (954)
Q Consensus 255 ~~~~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f 334 (954)
.+..|.+||||||||+ +||.|||+|.++. ....+. .+..|.|+||| |+++|||.+..|+||+.+.++|
T Consensus 9 ~~~~~~~GDLV~AKlk-gyp~WParI~~~~----~~~~kp-~pkky~V~FfG------T~e~Afl~p~dlqpy~~~k~~~ 76 (496)
T KOG1904|consen 9 AAGNFKCGDLVFAKLK-GYPPWPARIRNGP----DGAVKP-PPKKYTVFFFG------TKETAFLKPKDLQPYMLNKEKL 76 (496)
T ss_pred ccCCCCCCceeeeccc-CCCCCcccccCcc----cccccC-CCceeEEEEec------cCcccccchhhccchhhhhhhc
Confidence 3568999999999997 7999999999775 555555 56679999999 9999999999999999998888
Q ss_pred cccccCCCCChhHHHHHHHHHHHHH
Q 002201 335 QEQSELNDCKPSDFQMALEEAFLAD 359 (954)
Q Consensus 335 ~~q~~~~k~k~~~f~~AleEA~~a~ 359 (954)
.. .+.... ..|++||+++..|.
T Consensus 77 g~-~~k~~~--k~F~~av~eI~~a~ 98 (496)
T KOG1904|consen 77 GK-PNKRVW--KGFIEAVEEIREAF 98 (496)
T ss_pred cc-chhhhh--HHHHHHHHHHHHHh
Confidence 43 222211 48999999996553
No 21
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.32 E-value=4.1e-13 Score=122.78 Aligned_cols=86 Identities=30% Similarity=0.544 Sum_probs=76.2
Q ss_pred eccccCcCCceEeCCCCC--cccccccCCCCCCCCceeEeeeccCCCeeeecC--CcCcccchhhhhhcCCeEEEEeecc
Q 002201 702 HVTCAWFQPEVSFASDEK--MEPALGILCIPSNSFVKICVICKQIHGSCTQCC--KCSTYYHAMCASRAGYRMELHCLEK 777 (954)
Q Consensus 702 Hv~CAlw~Pev~f~~~~~--~~pv~gi~~i~~~~~~~~C~iC~~~~Ga~IqC~--~C~~aFHv~CA~~aGl~me~~~~~~ 777 (954)
|+.||+|.|++.+.+... +.++.++..+...++++.|.+|++..|++|+|. .|.+.||+.||+.+|+.+++..
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~--- 77 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEFDE--- 77 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEEcc---
Confidence 899999999999998863 667888999999999999999999889999997 6999999999999999998752
Q ss_pred CCccccceEEeCCCCC
Q 002201 778 NGRQITKMVSYCAYHR 793 (954)
Q Consensus 778 ~g~~~~~~~~yC~~H~ 793 (954)
+...+.+||+.|+
T Consensus 78 ---~~~~~~~~C~~H~ 90 (90)
T PF13771_consen 78 ---DNGKFRIFCPKHS 90 (90)
T ss_pred ---CCCceEEEChhcC
Confidence 2347899999995
No 22
>smart00258 SAND SAND domain.
Probab=98.92 E-value=4.6e-10 Score=98.80 Aligned_cols=62 Identities=24% Similarity=0.450 Sum_probs=54.6
Q ss_pred ceeeeecccceeeecccc--ceeeeecccCCcccccchhhhccCC-Ccccccccchh--hhhhHhhh
Q 002201 537 NVTVLCSGVEGIYYPSLH--LVVCKCGFCGTEKLALSDWERHTGS-KLRNWRTSVRM--LQLAEYHA 598 (954)
Q Consensus 537 ~~~v~c~~veG~~~~~~~--gi~ckC~~c~~~~~spsefE~h~G~-r~K~wk~Sirm--~~l~~~~~ 598 (954)
.|||+||+++|+||.+++ |+.++||+++++-+||+|||.++|. ++|+|+.|||+ .+|..++.
T Consensus 2 ~lpV~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~~g~~Lr~L~~ 68 (73)
T smart00258 2 ELPVTCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRCGGSSLRTLME 68 (73)
T ss_pred ccceeeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchheeECCccHHHHHH
Confidence 479999999999999999 7999999999988999999999998 99999999994 34544443
No 23
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=98.85 E-value=5.2e-10 Score=101.38 Aligned_cols=66 Identities=26% Similarity=0.490 Sum_probs=55.6
Q ss_pred CCceeeeecccceeeecccc---ceeeeecccCCcccccchhhhccCC-Ccccccccch--hhhhhHhhhcc
Q 002201 535 PNNVTVLCSGVEGIYYPSLH---LVVCKCGFCGTEKLALSDWERHTGS-KLRNWRTSVR--MLQLAEYHANT 600 (954)
Q Consensus 535 p~~~~v~c~~veG~~~~~~~---gi~ckC~~c~~~~~spsefE~h~G~-r~K~wk~Sir--m~~l~~~~~~~ 600 (954)
...|+|+||.++|+|+++++ |+..+|+++++..+||+|||+++|. ++|+|+.||| ..+|+.|+..+
T Consensus 8 ~~~lpVtCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr~~g~~L~~li~~~ 79 (82)
T PF01342_consen 8 DPELPVTCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIRCGGEPLGKLIEKG 79 (82)
T ss_dssp CSEEEEEETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSEETTEEHHHHHHTT
T ss_pred CCeEeeEeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEEECCEEHHHHHhhC
Confidence 67899999999999999888 7889999999888999999999999 9999999999 45777776543
No 24
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=98.82 E-value=1.4e-09 Score=127.02 Aligned_cols=56 Identities=30% Similarity=0.548 Sum_probs=54.0
Q ss_pred ccCCceEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHHHHHHhhhccc
Q 002201 895 TEHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERDLCCSFSR 950 (954)
Q Consensus 895 ~~~~~~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~Re~~y~~~~~~ 950 (954)
...++|.++.|.|-|||||+++++.+++||+||+||+|+++|||+|++.|+.+||+
T Consensus 591 ~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cS 646 (739)
T KOG1079|consen 591 GEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCS 646 (739)
T ss_pred hhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccce
Confidence 56789999999999999999999999999999999999999999999999999987
No 25
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.70 E-value=1.9e-09 Score=125.97 Aligned_cols=100 Identities=28% Similarity=0.611 Sum_probs=83.5
Q ss_pred cccccccCCCCccCCCCCCCCCCCCccccccccccccccccccHHhhhcCCccccccccccCCCCCCeeeCCCCCceeec
Q 002201 403 DKVSWAKNKDKRPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHA 482 (954)
Q Consensus 403 ~Q~~~~kck~c~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~ 482 (954)
-+.-|. |+.|..|.+|+..+++-+ ..|..+++.|.+|.. +.|||+|.++|.+++...|++|+.|++|+|+
T Consensus 106 ~sg~~~-ckk~~~c~qc~~~lpg~s-----~~~~~~~~~~~~c~s----~~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~ 175 (694)
T KOG4443|consen 106 PSGPWL-CKKCTRCRQCDSTLPGLS-----LDLQEGYLQCAPCAS----LSYCPVCLIVYQDSESLPMVCCSICQRWSHG 175 (694)
T ss_pred cCcccc-cHHHHhhhhccccccccc-----hhhhccCcccccccc----cccCchHHHhhhhccchhhHHHHHhcccccC
Confidence 334565 999999999999999822 268888999999974 7899999999999999999999999999999
Q ss_pred ccccccccccccc-CCCcccCCccccccccc
Q 002201 483 ECDKISSSHFKDL-GGSEYYCPACKAKFNFE 512 (954)
Q Consensus 483 ~Cd~~~~~~~e~~-~~~~Y~Cp~Cr~k~~~~ 512 (954)
.|+++.++.+... -+..|.|..||...-.+
T Consensus 176 ~c~~~sdd~~~q~~vD~~~~CS~CR~es~qv 206 (694)
T KOG4443|consen 176 GCDGISDDKYMQAQVDLQYKCSTCRGESYQV 206 (694)
T ss_pred CCCccchHHHHHHhhhhhcccceeehhhhhh
Confidence 9999999865432 34689999999554443
No 26
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=98.63 E-value=5.6e-09 Score=80.34 Aligned_cols=35 Identities=37% Similarity=0.918 Sum_probs=21.8
Q ss_pred CceEEcCCCCccccCccccCccccCCCceeEeccc
Q 002201 651 NKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVY 685 (954)
Q Consensus 651 ~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~ 685 (954)
|+||+|++|+++||+.|||+..+++...|+|+.|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 79999999999999999999999985589999995
No 27
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=7.6e-08 Score=113.53 Aligned_cols=56 Identities=25% Similarity=0.393 Sum_probs=53.4
Q ss_pred hcccccCCceEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHHHHHHhh
Q 002201 891 TFRRTEHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERDLCC 946 (954)
Q Consensus 891 ~~~~~~~~~~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~Re~~y~~ 946 (954)
+|.+.++-.|.|+++..+||||.|.++|++|+||+||+||||...+..+|.+.|.+
T Consensus 113 RFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~ 168 (729)
T KOG4442|consen 113 RFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAK 168 (729)
T ss_pred hhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHh
Confidence 46688899999999999999999999999999999999999999999999999987
No 28
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.42 E-value=9.9e-08 Score=78.36 Aligned_cols=51 Identities=31% Similarity=0.935 Sum_probs=41.2
Q ss_pred ccccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccccc
Q 002201 454 FCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 454 yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
+|++|++ .++..+||+|+.|++|+|..|.++......... ..|+|+.|+.+
T Consensus 1 ~C~vC~~---~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~-~~w~C~~C~~~ 51 (51)
T PF00628_consen 1 YCPVCGQ---SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPS-GDWYCPNCRPK 51 (51)
T ss_dssp EBTTTTS---SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHS-SSBSSHHHHHC
T ss_pred eCcCCCC---cCCCCCeEEcCCCChhhCcccCCCChhhccCCC-CcEECcCCcCc
Confidence 5899998 455678999999999999999998887444332 38999999853
No 29
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=97.82 E-value=1.1e-05 Score=92.42 Aligned_cols=51 Identities=27% Similarity=0.305 Sum_probs=45.5
Q ss_pred cCCceEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHHHHHHhh
Q 002201 896 EHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERDLCC 946 (954)
Q Consensus 896 ~~~~~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~Re~~y~~ 946 (954)
...+|+|+|+...||||++.++|++|+||+||+||+++..++++|-..|+.
T Consensus 174 ~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~ 224 (364)
T KOG1082|consen 174 LQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREY 224 (364)
T ss_pred cccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccc
Confidence 456899999999999999999999999999999999999999988544433
No 31
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.77 E-value=6.8e-06 Score=88.25 Aligned_cols=45 Identities=18% Similarity=0.513 Sum_probs=38.6
Q ss_pred cccccCCCccCCCCceEEcCCCCccccCccccCccccCCCceeEe-ccc
Q 002201 638 RCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFE-IVY 685 (954)
Q Consensus 638 ~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~-~C~ 685 (954)
.|.||+.... ++.+++||.|.+-+|..|.|+..+|. |.|.|+ .|.
T Consensus 316 lC~IC~~P~~--E~E~~FCD~CDRG~HT~CVGL~~lP~-G~WICD~~C~ 361 (381)
T KOG1512|consen 316 LCRICLGPVI--ESEHLFCDVCDRGPHTLCVGLQDLPR-GEWICDMRCR 361 (381)
T ss_pred hhhccCCccc--chheeccccccCCCCccccccccccC-ccchhhhHHH
Confidence 4888887554 36899999999999999999999999 999999 343
No 32
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.64 E-value=2.1e-05 Score=64.56 Aligned_cols=45 Identities=29% Similarity=0.573 Sum_probs=38.1
Q ss_pred cccccCCCccCCCCceEEcCCCCccccCccccCccc----cCCCceeEeccc
Q 002201 638 RCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNV----QDFTSWVFEIVY 685 (954)
Q Consensus 638 ~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~----p~~~~W~C~~C~ 685 (954)
+|.||+. ..+.+.+|+|+.|+..||..|+++... +. +.|+|..|+
T Consensus 1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~-~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPS-GDWYCPNCR 49 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHS-SSBSSHHHH
T ss_pred eCcCCCC--cCCCCCeEEcCCCChhhCcccCCCChhhccCCC-CcEECcCCc
Confidence 4889998 455689999999999999999999854 23 589999986
No 33
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.46 E-value=5.1e-05 Score=83.76 Aligned_cols=40 Identities=33% Similarity=0.860 Sum_probs=35.1
Q ss_pred CCCCCeeeCCC--CC-ceeeccccccccccccccCCCcccCCcccccc
Q 002201 465 SDGGSWVRCDG--CK-VWVHAECDKISSSHFKDLGGSEYYCPACKAKF 509 (954)
Q Consensus 465 ~d~~~~VqCd~--C~-~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k~ 509 (954)
..+++||.||+ |. .|||..|+++... |...++||.|+...
T Consensus 227 vsyg~Mi~CDn~~C~~eWFH~~CVGL~~~-----PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 227 VSYGKMIGCDNPGCPIEWFHFTCVGLKTK-----PKGKWYCPRCKAEN 269 (274)
T ss_pred cccccccccCCCCCCcceEEEeccccccC-----CCCcccchhhhhhh
Confidence 45688999998 99 9999999999875 77789999999765
No 35
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.45 E-value=8.8e-05 Score=87.69 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=41.9
Q ss_pred CcccccCCCccCCCCceEEcCCCCccccCccccCc----cccCCCceeEecccc
Q 002201 637 ERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAR----NVQDFTSWVFEIVYT 686 (954)
Q Consensus 637 ~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~----~~p~~~~W~C~~C~~ 686 (954)
++|+-|...+.. +++|+||+|..+||+.|+-++ .+|. +.|+|..|..
T Consensus 254 ~fCsaCn~~~~F--~~~i~CD~Cp~sFH~~CLePPl~~eniP~-g~W~C~ec~~ 304 (613)
T KOG4299|consen 254 DFCSACNGSGLF--NDIICCDGCPRSFHQTCLEPPLEPENIPP-GSWFCPECKI 304 (613)
T ss_pred HHHHHhCCcccc--ccceeecCCchHHHHhhcCCCCCcccCCC-CccccCCCee
Confidence 489999997765 899999999999999999998 3566 8999999998
No 36
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.42 E-value=4e-05 Score=82.14 Aligned_cols=45 Identities=22% Similarity=0.667 Sum_probs=38.1
Q ss_pred cccccCCCccCCCCceEEcCCCCccccCccccCccc--cCCCceeEeccc
Q 002201 638 RCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNV--QDFTSWVFEIVY 685 (954)
Q Consensus 638 ~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~--p~~~~W~C~~C~ 685 (954)
-|+||+..+ ++++||+||.|.+-+|.+|+.++.+ |+ |+|.|..|.
T Consensus 283 ~csicgtse--nddqllfcddcdrgyhmyclsppm~eppe-gswsc~KOG 329 (336)
T KOG1244|consen 283 YCSICGTSE--NDDQLLFCDDCDRGYHMYCLSPPMVEPPE-GSWSCHLCL 329 (336)
T ss_pred eeccccCcC--CCceeEeecccCCceeeEecCCCcCCCCC-CchhHHHHH
Confidence 488888754 4579999999999999999999853 56 999999995
No 37
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.40 E-value=9.2e-05 Score=88.37 Aligned_cols=48 Identities=15% Similarity=0.446 Sum_probs=41.3
Q ss_pred CCcccccCCCccCCCCceEEcCCCCcc-ccCccccCcc--ccCCCceeEecccc
Q 002201 636 TERCAVCRWVEDWDYNKIIICNRCQIA-VHQECYGARN--VQDFTSWVFEIVYT 686 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~C~~a-vH~~CyGv~~--~p~~~~W~C~~C~~ 686 (954)
.-.|.||+..+.+ +.||.|+.|+.. +|.+|+.... +|- +.|+|..|..
T Consensus 215 ~~~C~IC~~~DpE--dVLLLCDsCN~~~YH~YCLDPdl~eiP~-~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVHDPE--DVLLLCDSCNKVYYHVYCLDPDLSESPV-NEWYCTNCSL 265 (1134)
T ss_pred cccceeeccCChH--HhheeecccccceeeccccCcccccccc-cceecCcchh
Confidence 4579999987654 699999999999 9999998864 666 9999999987
No 38
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.37 E-value=0.0002 Score=83.04 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=81.7
Q ss_pred CCCcccccCCCccCCCCceEEcCCCCccccCccccCccccCCCceeEecccc-----CcCCCCcccCCCceeeccccCcC
Q 002201 635 TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT-----EGGALKPTDVDSLWVHVTCAWFQ 709 (954)
Q Consensus 635 ~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~-----~gGaLK~t~~~g~WvHv~CAlw~ 709 (954)
....|.||........+.+..|++|...+||.|...... ..+.|.+..|.. .|+++|.. .-+|
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~-~~~~~~~~~c~~~~~~~~g~a~K~g----~~a~------- 149 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFP-SLDIGESTECVFPIFSQEGGALKKG----RLAR------- 149 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcC-cCCcccccccccccccccccccccc----cccc-------
Confidence 456799999887777889999999999999999765544 337899998988 88888865 3555
Q ss_pred CceEeCCCCCcccccccCCCCCCCCceeEeeeccC----CCeeeecCCcCcccchhhhhhcCCeEE
Q 002201 710 PEVSFASDEKMEPALGILCIPSNSFVKICVICKQI----HGSCTQCCKCSTYYHAMCASRAGYRME 771 (954)
Q Consensus 710 Pev~f~~~~~~~pv~gi~~i~~~~~~~~C~iC~~~----~Ga~IqC~~C~~aFHv~CA~~aGl~me 771 (954)
|-+.+..... +.+... .....|+||..- .-.++||.+|.++||-.|.+..--.++
T Consensus 150 ~~l~y~~~~l-----~wD~~~--~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l 208 (464)
T KOG4323|consen 150 PSLPYPEASL-----DWDSGH--KVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDEL 208 (464)
T ss_pred ccccCccccc-----ccCccc--cccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhh
Confidence 2222221100 011111 112349999841 227999999999999999987655443
No 39
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.12 E-value=0.00085 Score=62.41 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=41.6
Q ss_pred eEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHHHHHHhh
Q 002201 900 VCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERDLCC 946 (954)
Q Consensus 900 ~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~Re~~y~~ 946 (954)
+++.++..+|+||||+++|++|++|+||.|.++...++..+...|..
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~ 48 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDT 48 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHh
Confidence 56778889999999999999999999999999999999888765544
No 40
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.99 E-value=0.00068 Score=73.52 Aligned_cols=48 Identities=29% Similarity=0.420 Sum_probs=41.7
Q ss_pred ceEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHHHHHHhh
Q 002201 899 RVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERDLCC 946 (954)
Q Consensus 899 ~~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~Re~~y~~ 946 (954)
.+.+.--..+|.|+.|+.++..|+||+||+|.+|.-.+|..||++|-.
T Consensus 257 gl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~ 304 (392)
T KOG1085|consen 257 GLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYAN 304 (392)
T ss_pred ceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhcc
Confidence 344443444999999999999999999999999999999999999965
No 41
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=96.91 E-value=0.00046 Score=81.34 Aligned_cols=79 Identities=30% Similarity=0.604 Sum_probs=54.3
Q ss_pred CCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCccchhhhccc
Q 002201 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDFVDRFQEQ 337 (954)
Q Consensus 258 ~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~~d~f~~q 337 (954)
.+.+||+||-++| .|||||+.|+.+. .++ +...+. .|+||| . |+|+...++++|....+++..
T Consensus 135 ~~~~~~~vw~~vg-~~~~~~c~vc~~~-~~~---~~~~~~---~~~f~~------~--~~~~~~~~~~~~~g~~~~~l~- 197 (463)
T KOG1081|consen 135 KREVGDLVWSKVG-EYPWWPCMVCHDP-LLP---KGMKHD---HVNFFG------C--YAWTHEKRVFPYEGQSSKLIP- 197 (463)
T ss_pred cccceeEEeEEcC-cccccccceecCc-ccc---hhhccc---cceecc------c--hhhHHHhhhhhccchHHHhhh-
Confidence 7889999999999 8999999998776 555 222222 899999 4 999999999999333333322
Q ss_pred ccCCCCChhHHHHHHHHH
Q 002201 338 SELNDCKPSDFQMALEEA 355 (954)
Q Consensus 338 ~~~~k~k~~~f~~AleEA 355 (954)
......+...+++.++
T Consensus 198 --~~~~~~s~~~~~~~~~ 213 (463)
T KOG1081|consen 198 --HSKKPASTMSEKIKEA 213 (463)
T ss_pred --hccccchhhhhhhhcc
Confidence 1222223455555554
No 42
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.68 E-value=0.00081 Score=78.14 Aligned_cols=69 Identities=19% Similarity=0.416 Sum_probs=52.7
Q ss_pred CCcccccCCCccCCCCceEEcCCCCccccCccccCccccC-----CCceeEeccccCcCCCCcccCCCceeecccc
Q 002201 636 TERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQD-----FTSWVFEIVYTEGGALKPTDVDSLWVHVTCA 706 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~-----~~~W~C~~C~~~gGaLK~t~~~g~WvHv~CA 706 (954)
+..|+||+.+.....|.||+|++|+.-||+.|.-....+. +..|+|..|.+.-.-+.++ .+.||-++-.
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~--t~~~~dv~~l 241 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRL--TLRWADVLHL 241 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcccc--ccccccccch
Confidence 4469999988888888999999999999999997764432 3679999998744444444 3677765443
No 43
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.66 E-value=0.00081 Score=72.11 Aligned_cols=48 Identities=38% Similarity=1.020 Sum_probs=38.4
Q ss_pred cCCccccccccccCCCCCCeeeCC--CCC-ceeeccccccccccccccCCCcccCCccccc
Q 002201 451 SKHFCGICKKVWNHSDGGSWVRCD--GCK-VWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 451 kg~yCpiC~k~y~~~d~~~~VqCd--~C~-~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
.-.|| +|+++ .+++||.|| .|+ -|||.+|+++... |+..|+||.|+..
T Consensus 220 e~lYC-fCqqv----SyGqMVaCDn~nCkrEWFH~~CVGLk~p-----PKG~WYC~eCk~~ 270 (271)
T COG5034 220 EELYC-FCQQV----SYGQMVACDNANCKREWFHLECVGLKEP-----PKGKWYCPECKKA 270 (271)
T ss_pred ceeEE-Eeccc----ccccceecCCCCCchhheeccccccCCC-----CCCcEeCHHhHhc
Confidence 34466 78764 357899999 577 6999999998875 8899999999853
No 44
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=95.92 E-value=0.0051 Score=71.09 Aligned_cols=89 Identities=26% Similarity=0.700 Sum_probs=57.4
Q ss_pred cccCCCCccCCCCCCCCCCCCccccccccccccccccccHHhhhcCCccccccccccCC-CCCCeeeCCCCCceeecccc
Q 002201 407 WAKNKDKRPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKKVWNHS-DGGSWVRCDGCKVWVHAECD 485 (954)
Q Consensus 407 ~~kck~c~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpiC~k~y~~~-d~~~~VqCd~C~~WvH~~Cd 485 (954)
+++|++- .|.+.+|-......- =..+-.+|..|. |+||.| |+.+ ++-.||.||.|.+|-|.+|-
T Consensus 97 ~~rCrN~----aC~s~LP~ddc~C~i--C~~~~gFC~~C~--------C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCA 161 (446)
T PF07227_consen 97 YKRCRNL----ACRSQLPVDDCDCKI--CCSEPGFCRRCM--------CCICSK-FDDNKNTCSWIGCDVCGHWCHLDCA 161 (446)
T ss_pred HHhcCCH----HhhccCCccccCcch--hcCCCCccccCC--------ccccCC-cccCCCCeeEEeccCCCceehhhhh
Confidence 3556664 666677643211100 012567999995 999998 5544 45789999999999999996
Q ss_pred ccccccc------cc---cCCCcccCCcccccccc
Q 002201 486 KISSSHF------KD---LGGSEYYCPACKAKFNF 511 (954)
Q Consensus 486 ~~~~~~~------e~---~~~~~Y~Cp~Cr~k~~~ 511 (954)
+....+ .. ..+..|+|-.|......
T Consensus 162 -Lr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~seL 195 (446)
T PF07227_consen 162 -LRHELIGTGPSVKGSIGTLDMQFHCRACGKTSEL 195 (446)
T ss_pred -cccccccCCccCCCCCccCceEEEccCCCChhhH
Confidence 222111 11 13568999999866633
No 45
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=95.70 E-value=0.0086 Score=61.04 Aligned_cols=49 Identities=18% Similarity=0.561 Sum_probs=37.2
Q ss_pred cccccCC-CccCCCCceEEcCCCCccccCccccCccccC-----C--Cc--eeEecccc
Q 002201 638 RCAVCRW-VEDWDYNKIIICNRCQIAVHQECYGARNVQD-----F--TS--WVFEIVYT 686 (954)
Q Consensus 638 ~C~VC~~-~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~-----~--~~--W~C~~C~~ 686 (954)
.|.+|+. +++.+.+.||+|.+|..+||+.|+|.....+ + +. --|++|.-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig 59 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG 59 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC
Confidence 4899976 4566778999999999999999999974322 1 23 45888865
No 46
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=95.40 E-value=0.0025 Score=78.80 Aligned_cols=45 Identities=27% Similarity=0.492 Sum_probs=41.5
Q ss_pred cCCceEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHH
Q 002201 896 EHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLR 940 (954)
Q Consensus 896 ~~~~~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~R 940 (954)
.-..|.+++..-.||||.|+++|++|+||+||+||||...++..|
T Consensus 1176 ~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~ 1220 (1306)
T KOG1083|consen 1176 ECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPR 1220 (1306)
T ss_pred cCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhccc
Confidence 357899999999999999999999999999999999998887776
No 47
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=94.74 E-value=0.014 Score=70.45 Aligned_cols=39 Identities=26% Similarity=0.618 Sum_probs=33.0
Q ss_pred CCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccccc
Q 002201 465 SDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 465 ~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
++..+||-||.|+--||..|-+|... +...|.|..|.-.
T Consensus 283 e~~neMVfCd~Cn~cVHqaCyGIle~-----p~gpWlCr~Calg 321 (893)
T KOG0954|consen 283 EEANEMVFCDKCNICVHQACYGILEV-----PEGPWLCRTCALG 321 (893)
T ss_pred cccceeEEeccchhHHHHhhhceeec-----CCCCeeehhcccc
Confidence 34568999999999999999887664 7789999999844
No 48
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=94.48 E-value=0.0086 Score=71.25 Aligned_cols=51 Identities=35% Similarity=0.614 Sum_probs=46.5
Q ss_pred cCCceEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHHHHHHhh
Q 002201 896 EHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRERDLCC 946 (954)
Q Consensus 896 ~~~~~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~Re~~y~~ 946 (954)
......+..+.++|||+||++.|++|+||+||.|+++++.++..|+..|+.
T Consensus 330 ~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~ 380 (480)
T COG2940 330 RREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDL 380 (480)
T ss_pred ccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccc
Confidence 355677899999999999999999999999999999999999999988843
No 49
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=93.21 E-value=0.036 Score=61.44 Aligned_cols=37 Identities=24% Similarity=0.548 Sum_probs=33.5
Q ss_pred CCCceEEcCC--CC-ccccCccccCccccCCCceeEecccc
Q 002201 649 DYNKIIICNR--CQ-IAVHQECYGARNVQDFTSWVFEIVYT 686 (954)
Q Consensus 649 ~~~~Li~C~~--C~-~avH~~CyGv~~~p~~~~W~C~~C~~ 686 (954)
.++.+|-||+ |. -=||..|.|+...|. |.|+|..|..
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CVGL~~~Pk-gkWyC~~C~~ 267 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCVGLKTKPK-GKWYCPRCKA 267 (274)
T ss_pred ccccccccCCCCCCcceEEEeccccccCCC-Ccccchhhhh
Confidence 3589999997 99 889999999999998 8899999974
No 50
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=92.23 E-value=0.041 Score=42.66 Aligned_cols=34 Identities=32% Similarity=0.826 Sum_probs=18.5
Q ss_pred CeeeCCCCCceeeccccccccccccccCCCcccCCccc
Q 002201 469 SWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACK 506 (954)
Q Consensus 469 ~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr 506 (954)
.||+|+.|...||..|-++.... ...+++|-.|+
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~~----~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEVP----DGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS------SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCcccCC----CCCcEECCcCC
Confidence 58999999999999999887751 12259998874
No 51
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=90.40 E-value=0.18 Score=54.70 Aligned_cols=45 Identities=24% Similarity=0.641 Sum_probs=37.5
Q ss_pred CcccccCCCccCCCCceEEcC--CCCcc-ccCccccCccccCCCceeEeccc
Q 002201 637 ERCAVCRWVEDWDYNKIIICN--RCQIA-VHQECYGARNVQDFTSWVFEIVY 685 (954)
Q Consensus 637 ~~C~VC~~~e~~~~~~Li~C~--~C~~a-vH~~CyGv~~~p~~~~W~C~~C~ 685 (954)
..=+-|+.+. +++||-|| .|.+- ||..|.|+...|. |.|+|..|+
T Consensus 221 ~lYCfCqqvS---yGqMVaCDn~nCkrEWFH~~CVGLk~pPK-G~WYC~eCk 268 (271)
T COG5034 221 ELYCFCQQVS---YGQMVACDNANCKREWFHLECVGLKEPPK-GKWYCPECK 268 (271)
T ss_pred eeEEEecccc---cccceecCCCCCchhheeccccccCCCCC-CcEeCHHhH
Confidence 3445677763 58999998 58764 8999999999999 999999996
No 52
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=89.66 E-value=0.094 Score=63.09 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=41.4
Q ss_pred CCcccccCCCccCCCCceEEcCCCCccccCccccCccc--cCCCceeEecccc
Q 002201 636 TERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNV--QDFTSWVFEIVYT 686 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~--p~~~~W~C~~C~~ 686 (954)
-..|-||...+..-.+.|+.|..|+..+|.+|...... .-++.|.|..|+.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 45799999888888889999999999999999975421 1136699999988
No 53
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=89.47 E-value=0.16 Score=62.51 Aligned_cols=45 Identities=18% Similarity=0.587 Sum_probs=38.3
Q ss_pred CCcccccCCCccCCCCceEEcCCCCccccCccccCccc--cCCCceeEecccc
Q 002201 636 TERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNV--QDFTSWVFEIVYT 686 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~--p~~~~W~C~~C~~ 686 (954)
.+.|.||.++ +.+|+|+.|..+||..|.+.+.. |. +.|+|.+|..
T Consensus 47 ~e~c~ic~~~-----g~~l~c~tC~~s~h~~cl~~pl~~~p~-~~~~c~Rc~~ 93 (696)
T KOG0383|consen 47 QEACRICADG-----GELLWCDTCPASFHASCLGPPLTPQPN-GEFICPRCFC 93 (696)
T ss_pred hhhhhhhcCC-----CcEEEeccccHHHHHHccCCCCCcCCc-cceeeeeecc
Confidence 4579999997 68999999999999999999855 44 4499999954
No 54
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=89.31 E-value=0.071 Score=42.52 Aligned_cols=43 Identities=28% Similarity=0.580 Sum_probs=30.2
Q ss_pred ccccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccc
Q 002201 454 FCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACK 506 (954)
Q Consensus 454 yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr 506 (954)
-|+||...+.+ +..++... |.+.||.+|...-- ...+.||.||
T Consensus 2 ~C~IC~~~~~~--~~~~~~l~-C~H~fh~~Ci~~~~-------~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED--GEKVVKLP-CGHVFHRSCIKEWL-------KRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT--TSCEEEET-TSEEEEHHHHHHHH-------HHSSB-TTTH
T ss_pred CCcCCChhhcC--CCeEEEcc-CCCeeCHHHHHHHH-------HhCCcCCccC
Confidence 48999988875 34466666 99999999953222 1236999997
No 55
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=89.29 E-value=0.31 Score=56.91 Aligned_cols=56 Identities=25% Similarity=0.617 Sum_probs=39.0
Q ss_pred cCCccccccccccCCCCCCeeeCCCCCceeecccccccccc-c----cccCCCcccCCcccc
Q 002201 451 SKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSH-F----KDLGGSEYYCPACKA 507 (954)
Q Consensus 451 kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~-~----e~~~~~~Y~Cp~Cr~ 507 (954)
+.+.|.+|.--- ..|-.+.||||.|..-||-.|-+..+.. + .......|+|-.|+-
T Consensus 118 k~~iCcVClg~r-s~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~ 178 (707)
T KOG0957|consen 118 KAVICCVCLGQR-SVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLY 178 (707)
T ss_pred cceEEEEeecCc-cccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhc
Confidence 334677885322 2345789999999999999999877432 1 112347899999983
No 56
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.13 E-value=0.22 Score=54.57 Aligned_cols=80 Identities=20% Similarity=0.427 Sum_probs=51.9
Q ss_pred CccCCCCCCCCCCC---CccccccccccccccccccHHhhhcCCccccccccccCCCCCCeeeCCCCCceeecccccccc
Q 002201 413 KRPCDGCGMTLPSK---SAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISS 489 (954)
Q Consensus 413 c~~C~~CG~~~~~~---~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~ 489 (954)
-.+|..|..+.+-- +...+....-.-++-|..| ..|-||++. ....+|+-||.|+|=+|.=|+++..
T Consensus 279 ~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C-------~lC~IC~~P---~~E~E~~FCD~CDRG~HT~CVGL~~ 348 (381)
T KOG1512|consen 279 WIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSC-------ELCRICLGP---VIESEHLFCDVCDRGPHTLCVGLQD 348 (381)
T ss_pred ceeecccccCCCCcchhcCHHHHhHHhhcchhhccc-------HhhhccCCc---ccchheeccccccCCCCcccccccc
Confidence 34566666554421 1111111221234578888 358888874 3445799999999999999998765
Q ss_pred ccccccCCCcccCC-cccc
Q 002201 490 SHFKDLGGSEYYCP-ACKA 507 (954)
Q Consensus 490 ~~~e~~~~~~Y~Cp-~Cr~ 507 (954)
++...++|- .|+.
T Consensus 349 -----lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 349 -----LPRGEWICDMRCRE 362 (381)
T ss_pred -----ccCccchhhhHHHH
Confidence 488899998 4553
No 57
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=87.70 E-value=0.22 Score=57.65 Aligned_cols=82 Identities=21% Similarity=0.394 Sum_probs=59.1
Q ss_pred CCceeeccccCcCCceEeCCCCCcccccccCCCCCCCCceeEeeeccCCCeeeecC--CcCcccchhhhhhcCC-eEEEE
Q 002201 697 DSLWVHVTCAWFQPEVSFASDEKMEPALGILCIPSNSFVKICVICKQIHGSCTQCC--KCSTYYHAMCASRAGY-RMELH 773 (954)
Q Consensus 697 ~g~WvHv~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~~~C~iC~~~~Ga~IqC~--~C~~aFHv~CA~~aGl-~me~~ 773 (954)
...|+|+.|++|.|.+.+.....+..+...- ... +.+.|..|.+. |+.+.|. .|...+|.+|+..+-. ..+
T Consensus 237 ~~~~~h~~c~~~~~~~~~~q~~~l~~~~~~v--~r~-~~~~c~~c~k~-ga~~~c~~~~~~~~~h~~c~~~~~~~~~~-- 310 (375)
T KOG1084|consen 237 FELWYHRYCALWAPNVHESQGGQLTNVDNAV--IRF-PSLQCILCQKP-GATLKCVQASLLSNAHFPCARAKNGIPLD-- 310 (375)
T ss_pred hhHHHHHHHHhcCCcceeccCccccCchhhh--hcc-cchhcccccCC-CCchhhhhhhhhcccCcccccCcccccch--
Confidence 4689999999999999998886666543221 111 23789999975 6667664 6899999999966543 221
Q ss_pred eeccCCccccceEEeCCCCC
Q 002201 774 CLEKNGRQITKMVSYCAYHR 793 (954)
Q Consensus 774 ~~~~~g~~~~~~~~yC~~H~ 793 (954)
....++|+.|+
T Consensus 311 ---------~~r~v~~~~h~ 321 (375)
T KOG1084|consen 311 ---------YDRKVSCPRHR 321 (375)
T ss_pred ---------hhhhccCCCCC
Confidence 13467999998
No 58
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=87.70 E-value=0.34 Score=62.18 Aligned_cols=89 Identities=22% Similarity=0.471 Sum_probs=62.6
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhh------------------c-cCCCCeEEEEEccccCCCCCCcEEEe
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVL------------------R-SCIPDAACVMFFGHCGDVNQRDYAWV 319 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~------------------~-~~~~~~~~V~FFG~s~~~~s~dyaWv 319 (954)
+..=++||||+. +|||.|+.|++|....+.++. . ...+..++|.||. +.+.+.|+
T Consensus 943 l~~~~~~~akc~-g~~s~~~l~l~p~~~~~~~~~~g~~~~p~~dv~~l~eq~~~~~~~~l~~~L~~~-----n~~~~~~~ 1016 (1051)
T KOG0955|consen 943 LEELKLVWAKCR-GYPSYPALILDPKMPREGNFHNGPDPAPPTDVLALPEQRTNKAPETLFLVLFFD-----NKRCWQWL 1016 (1051)
T ss_pred eeehhceeehhc-CCccchhhhcccccccccCccCCCCCCCCcccccchHHHhcccChhheEEEeec-----cccccccc
Confidence 566679999996 699999999999865444431 1 1124568999999 89999999
Q ss_pred eCCceecCccchhhhcccccCCCCChhHHHHHHHHH
Q 002201 320 KRGLIFPFVDFVDRFQEQSELNDCKPSDFQMALEEA 355 (954)
Q Consensus 320 ~~~~i~Pf~e~~d~f~~q~~~~k~k~~~f~~AleEA 355 (954)
.+..+.+.- .+....+.++-..++..-++++.+|
T Consensus 1017 ~~s~~~~l~--~~~~~d~~~~~~~~~~~~r~~~~~~ 1050 (1051)
T KOG0955|consen 1017 PRSKVLELG--VDSTSDKIKMLEGRNIEIRKSVQIA 1050 (1051)
T ss_pred CCCCccccc--chhhhhhhhhccCCChhhhcccccc
Confidence 999877763 3344444445555555666666654
No 59
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=87.52 E-value=0.3 Score=53.30 Aligned_cols=78 Identities=22% Similarity=0.456 Sum_probs=54.0
Q ss_pred CccCCCCCCCCCCC--------CccccccccccccccccccHHhhhcCCccccccccccCCCCCCeeeCCCCCceeeccc
Q 002201 413 KRPCDGCGMTLPSK--------SAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAEC 484 (954)
Q Consensus 413 c~~C~~CG~~~~~~--------~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~C 484 (954)
=+.|.+||..-+-. ......++| .|..| .||.||+-.-++ .+++.||.|+|=+|.=|
T Consensus 246 lvscsdcgrsghpsclqft~nm~~avk~yrw-----qciec-------k~csicgtsend---dqllfcddcdrgyhmyc 310 (336)
T KOG1244|consen 246 LVSCSDCGRSGHPSCLQFTANMIAAVKTYRW-----QCIEC-------KYCSICGTSEND---DQLLFCDDCDRGYHMYC 310 (336)
T ss_pred hcchhhcCCCCCcchhhhhHHHHHHHHhhee-----eeeec-------ceeccccCcCCC---ceeEeecccCCceeeEe
Confidence 35799999764432 222234555 58888 589999864432 45999999999999999
Q ss_pred cccccccccccCCCcccCCccccc
Q 002201 485 DKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 485 d~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
-.++-. .-+...|.|..|-..
T Consensus 311 lsppm~---eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 311 LSPPMV---EPPEGSWSCHLCLEE 331 (336)
T ss_pred cCCCcC---CCCCCchhHHHHHHH
Confidence 754442 235678999988643
No 60
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=87.19 E-value=0.74 Score=58.53 Aligned_cols=109 Identities=19% Similarity=0.393 Sum_probs=70.5
Q ss_pred CCCcccccCCCccCCCCceEEcCCCCccccCccccCcc--ccCCCceeEecccc--CcCCCCcccCCCceeeccccCcCC
Q 002201 635 TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARN--VQDFTSWVFEIVYT--EGGALKPTDVDSLWVHVTCAWFQP 710 (954)
Q Consensus 635 ~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~--~p~~~~W~C~~C~~--~gGaLK~t~~~g~WvHv~CAlw~P 710 (954)
-++.|-+|.+. +.+++|..|++.||.+|.-.+. +|. ..|-|..|.. ..|+.. |.+-..
T Consensus 343 ~ddhcrf~~d~-----~~~lc~Et~prvvhlEcv~hP~~~~~s-~~~e~evc~~hkvngvvd------------~vl~~~ 404 (1414)
T KOG1473|consen 343 YDDHCRFCHDL-----GDLLCCETCPRVVHLECVFHPRFAVPS-AFWECEVCNIHKVNGVVD------------CVLPPS 404 (1414)
T ss_pred ecccccccCcc-----cceeecccCCceEEeeecCCccccCCC-ccchhhhhhhhccCcccc------------cccChh
Confidence 47899999986 7999999999999999987774 455 7899999975 222221 221110
Q ss_pred ceEeCCCCCcccccccCCCCCCCC--ceeEeeeccCCCeeeecCC-cCcccch-hhhhh
Q 002201 711 EVSFASDEKMEPALGILCIPSNSF--VKICVICKQIHGSCTQCCK-CSTYYHA-MCASR 765 (954)
Q Consensus 711 ev~f~~~~~~~pv~gi~~i~~~~~--~~~C~iC~~~~Ga~IqC~~-C~~aFHv-~CA~~ 765 (954)
.-.+...-.| .|.+...+..| .-.|.||+. .+..+.|.. |++.||. .|.-+
T Consensus 405 --K~~~~iR~~~-iG~dr~gr~ywfi~rrl~Ie~~-det~l~yysT~pqly~ll~cLd~ 459 (1414)
T KOG1473|consen 405 --KNVDSIRHTP-IGRDRYGRKYWFISRRLRIEGM-DETLLWYYSTCPQLYHLLRCLDR 459 (1414)
T ss_pred --hcccceeccC-CCcCccccchhceeeeeEEecC-CCcEEEEecCcHHHHHHHHHhch
Confidence 0001111122 23333333333 247999997 478888875 9999999 78754
No 61
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=86.66 E-value=1.3 Score=36.75 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=43.5
Q ss_pred CCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCc
Q 002201 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFV 328 (954)
Q Consensus 258 ~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~ 328 (954)
.|.+|++|=|+. ..--|.+|+|+... + .+.+.|.|.+ ..+..||+...|.+..
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~---~--------~~~~~V~f~D------~G~~~~v~~~~l~~l~ 54 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVD---G--------EQLYEVFFID------YGNEEVVPPSDLRPLP 54 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEEC---C--------CCEEEEEEEC------CCccEEEeHHHeecCC
Confidence 588999999999 24789999998765 1 1468999998 7888999999888764
No 62
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=86.64 E-value=0.46 Score=40.20 Aligned_cols=33 Identities=27% Similarity=0.757 Sum_probs=27.9
Q ss_pred CCCcccccCCCccCCCCceEEcCCCCccccCccc
Q 002201 635 TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECY 668 (954)
Q Consensus 635 ~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~Cy 668 (954)
....|.+|++.-. +.++++.|..|+..+|..||
T Consensus 4 ~~~~C~~Cg~~~~-~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 4 EGCKCPVCGKKFK-DGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred cCccChhhCCccc-CCCCEEECCCCCCcccHHHH
Confidence 3468999998643 34799999999999999999
No 63
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=86.10 E-value=0.6 Score=59.31 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=49.0
Q ss_pred CCcccccCCCccCCCCceEEcCC-CCccccC-ccccCc----cccCCCceeEecccc------------CcCCCCc--cc
Q 002201 636 TERCAVCRWVEDWDYNKIIICNR-CQIAVHQ-ECYGAR----NVQDFTSWVFEIVYT------------EGGALKP--TD 695 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~-C~~avH~-~CyGv~----~~p~~~~W~C~~C~~------------~gGaLK~--t~ 695 (954)
...|-||+.. +.+++|.. |..++|. .|++-. .+++ +.|+|+.|.. ..|+.-- -.
T Consensus 428 ~rrl~Ie~~d-----et~l~yysT~pqly~ll~cLd~~~~e~~L~d-~i~~~~ee~~rqM~lT~~ltne~R~~~~f~~~~ 501 (1414)
T KOG1473|consen 428 SRRLRIEGMD-----ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCD-GIWERREEIIRQMGLTEELTNELRGAVDFGEDP 501 (1414)
T ss_pred eeeeEEecCC-----CcEEEEecCcHHHHHHHHHhchHHHHHhhcc-chhhhHHHHHHhccchhhhhhhhhcccccccCC
Confidence 4589999965 68999986 9999998 999954 4567 9999999987 1121111 01
Q ss_pred CCCceeeccccCcC
Q 002201 696 VDSLWVHVTCAWFQ 709 (954)
Q Consensus 696 ~~g~WvHv~CAlw~ 709 (954)
....++|-.|++.+
T Consensus 502 h~r~~l~~~c~~~l 515 (1414)
T KOG1473|consen 502 HGRLFLGRDCAVLL 515 (1414)
T ss_pred CcceeeecchhhHH
Confidence 13588998898543
No 64
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=85.02 E-value=1.3 Score=37.56 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=29.2
Q ss_pred CCCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEcc
Q 002201 258 DFYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFG 306 (954)
Q Consensus 258 ~f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG 306 (954)
.|.+||+|-|+....--||+|+|+.-. + .+.+.|.|.+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~---~--------~~~~~V~~~~ 39 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVL---G--------DGKYLVRYLT 39 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEEC---C--------CCEEEEEECC
Confidence 589999999999113779999998544 1 3468998877
No 65
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=82.80 E-value=1.2 Score=54.19 Aligned_cols=46 Identities=30% Similarity=0.858 Sum_probs=34.5
Q ss_pred ccccc--ccccCCCCCCeeeCC--CCCceeeccccccccccccccCCCcccCCccccc
Q 002201 455 CGICK--KVWNHSDGGSWVRCD--GCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 455 CpiC~--k~y~~~d~~~~VqCd--~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
|.+|. +-|.+ ..+|-|| .|...||..|-+|-.- +...|+|-.|...
T Consensus 8 CCVCSDErGWae---NPLVYCDG~nCsVAVHQaCYGIvqV-----PtGpWfCrKCesq 57 (900)
T KOG0956|consen 8 CCVCSDERGWAE---NPLVYCDGHNCSVAVHQACYGIVQV-----PTGPWFCRKCESQ 57 (900)
T ss_pred eeeecCcCCCcc---CceeeecCCCceeeeehhcceeEec-----CCCchhhhhhhhh
Confidence 67883 22322 3589999 7999999999877554 7788999999743
No 66
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.34 E-value=0.57 Score=56.48 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=35.4
Q ss_pred CCeeeCCCCCceeeccccccccccccccCCCcccCCcccccccc
Q 002201 468 GSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFNF 511 (954)
Q Consensus 468 ~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k~~~ 511 (954)
-+.|+||+|.+-||..|..+... .+.++...++|+.|.-+...
T Consensus 266 ~~~i~CD~Cp~sFH~~CLePPl~-~eniP~g~W~C~ec~~k~~i 308 (613)
T KOG4299|consen 266 NDIICCDGCPRSFHQTCLEPPLE-PENIPPGSWFCPECKIKSVI 308 (613)
T ss_pred ccceeecCCchHHHHhhcCCCCC-cccCCCCccccCCCeeeeec
Confidence 34799999999999999987633 56788899999999866543
No 67
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=80.15 E-value=0.81 Score=56.65 Aligned_cols=51 Identities=31% Similarity=0.646 Sum_probs=40.2
Q ss_pred HhhhcCCccccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccc
Q 002201 447 KLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACK 506 (954)
Q Consensus 447 ~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr 506 (954)
.....-++|.||. +++..+.||.|..|+|+.|.+.... ..+...+.|+.|.
T Consensus 42 ~~~~~~e~c~ic~------~~g~~l~c~tC~~s~h~~cl~~pl~---~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 42 WDDAEQEACRICA------DGGELLWCDTCPASFHASCLGPPLT---PQPNGEFICPRCF 92 (696)
T ss_pred cchhhhhhhhhhc------CCCcEEEeccccHHHHHHccCCCCC---cCCccceeeeeec
Confidence 4556677888995 6788999999999999999876664 3344559999993
No 68
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=79.83 E-value=1.2 Score=54.95 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=40.5
Q ss_pred CceEEEecCccCceeeeccccCCCCeEEEecceecCHHHHHHHH
Q 002201 898 DRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLRE 941 (954)
Q Consensus 898 ~~~~v~~S~ihG~Glfa~~~i~~g~~ViEY~GEvI~~~~ad~Re 941 (954)
-++.++++..+|||+++.++|.+|.||+=|.|-++....+|.-|
T Consensus 799 vRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks~ 842 (1262)
T KOG1141|consen 799 VRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQISDKSE 842 (1262)
T ss_pred eEeeeccccccccceEeeeecCCceEEEEecchhhhhhhchhhh
Confidence 46888888889999999999999999999999999999998764
No 69
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=76.31 E-value=1.3 Score=49.66 Aligned_cols=86 Identities=16% Similarity=0.382 Sum_probs=53.8
Q ss_pred cccccccccccCCCC-------ccCCCCCCCCCCCCccccccccccccccccccHH--------------------hhh-
Q 002201 399 YPFIDKVSWAKNKDK-------RPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAK--------------------LMK- 450 (954)
Q Consensus 399 ~~~~~Q~~~~kck~c-------~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~--------------------l~~- 450 (954)
-+...|++|- |.+| .+|..|..+-+.+ .-....|-.--+.|+=|.. +|+
T Consensus 48 Gy~~rQ~l~s-ClTC~P~~~~agvC~~C~~~CH~~--H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNh 124 (345)
T KOG2752|consen 48 GYKKRQALFS-CLTCTPAPEMAGVCYACSLSCHDG--HELVELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNH 124 (345)
T ss_pred CcccccceeE-eecccCChhhceeEEEeeeeecCC--ceeeeccccCCcccccccccccccccccccccccccchhhhhh
Confidence 3466788885 7666 4677777666654 1111223323344543211 222
Q ss_pred --cCCccccccccccCC---CCCCeeeCCCCCceee-ccccccc
Q 002201 451 --SKHFCGICKKVWNHS---DGGSWVRCDGCKVWVH-AECDKIS 488 (954)
Q Consensus 451 --kg~yCpiC~k~y~~~---d~~~~VqCd~C~~WvH-~~Cd~~~ 488 (954)
+|.|| .|...|.+. .++.|+||-.|.-||| -.|-..+
T Consensus 125 NfqG~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 125 NFQGLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred hhcceeE-EecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 67788 899999883 2478999999999999 5555433
No 70
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=74.65 E-value=4.5 Score=32.34 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=35.2
Q ss_pred CCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceec
Q 002201 262 GDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFP 326 (954)
Q Consensus 262 GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~P 326 (954)
|++|-|+....--|.+|+|.... ..+.+.|+|.+ -.+...|+...|.|
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~-----------~~~~~~V~f~D------yG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSIL-----------SDGKVEVFFVD------YGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEEC-----------CCCcEEEEEEc------CCCcEEEeHHHcCC
Confidence 78999998424789999998654 14568999988 66667777666543
No 71
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=73.69 E-value=14 Score=35.05 Aligned_cols=60 Identities=27% Similarity=0.301 Sum_probs=35.3
Q ss_pred CCCEEEEec-CCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecCccc
Q 002201 261 SGDIVWAKS-GKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPFVDF 330 (954)
Q Consensus 261 ~GDlVWAK~-g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf~e~ 330 (954)
+|-+|=... .++-.|.||.|+.|.. .+.+. - ....++|+=|- +.-|+=|.++.|..|...
T Consensus 8 lGkVV~V~~~~~k~~W~PALVVsPsc--~ddv~-V-kKD~~lVRSFk------D~KfysV~rkd~~e~~~~ 68 (96)
T PF08169_consen 8 LGKVVCVESTKKKTSWFPALVVSPSC--NDDVT-V-KKDQCLVRSFK------DGKFYSVARKDVREFDID 68 (96)
T ss_dssp TTSEEEEE-SS-SS-EEEEEEE--SS---SS------TT-EEEEESS------S--EEEE-TTTEE---ST
T ss_pred cCcEEEEEcCCCCCceeeEEEEcCCc--cceee-e-ccceEEEEEec------cCceEEEEhhhhhhcccc
Confidence 689999887 3367899999999973 33342 1 25679999999 788888999999888644
No 72
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=70.35 E-value=5.6 Score=33.55 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=38.2
Q ss_pred CCCCCEEEEecCCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCcee
Q 002201 259 FYSGDIVWAKSGKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIF 325 (954)
Q Consensus 259 f~~GDlVWAK~g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~ 325 (954)
|.+|+.||++.+ .--|.+|.|++-. . ....-.|.|.|.|+. .+-=.||+.++|.
T Consensus 1 ~~vG~~v~~~~~-~~~~y~A~I~~~r-~-------~~~~~~YyVHY~g~n----kR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYK-DGQWYEAKILDIR-E-------KNGEPEYYVHYQGWN----KRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEET-TTEEEEEEEEEEE-E-------CTTCEEEEEEETTST----GCC-EEEETTTEE
T ss_pred CCcCCEEEEEEC-CCcEEEEEEEEEE-e-------cCCCEEEEEEcCCCC----CCceeeecHHHcc
Confidence 678999999994 4789999999765 1 111246999999943 4445799988874
No 73
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.54 E-value=3.7 Score=34.90 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=31.9
Q ss_pred ceeEeeeccC---CCeeeecCCcCcccchhhhhhcCCeEE
Q 002201 735 VKICVICKQI---HGSCTQCCKCSTYYHAMCASRAGYRME 771 (954)
Q Consensus 735 ~~~C~iC~~~---~Ga~IqC~~C~~aFHv~CA~~aGl~me 771 (954)
...|.+|+.. ++..+.|..|.+.||-.|....|-.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEe
Confidence 3569999964 678999999999999999999888764
No 74
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=68.03 E-value=4.3 Score=47.84 Aligned_cols=36 Identities=31% Similarity=0.633 Sum_probs=30.4
Q ss_pred CCeeeCCCCCceeeccccccccccccccCCCcccCCccccc
Q 002201 468 GSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 468 ~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
.-.|-||+|+--||.+|-+|... +...+.|-.|--.
T Consensus 208 naiVfCdgC~i~VHq~CYGI~f~-----peG~WlCrkCi~~ 243 (669)
T COG5141 208 NAIVFCDGCEICVHQSCYGIQFL-----PEGFWLCRKCIYG 243 (669)
T ss_pred ceEEEecCcchhhhhhcccceec-----Ccchhhhhhhccc
Confidence 56999999999999999887664 7778999999733
No 75
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=66.92 E-value=13 Score=38.51 Aligned_cols=54 Identities=24% Similarity=0.505 Sum_probs=34.0
Q ss_pred cccccccccCCCCCCeeeCCCCCceeeccccccccc--c-cccc--CCCcccCCccccc
Q 002201 455 CGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSS--H-FKDL--GGSEYYCPACKAK 508 (954)
Q Consensus 455 CpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~--~-~e~~--~~~~Y~Cp~Cr~k 508 (954)
|-.|.-...+..-+.||-|.+|---+|-.|.+.-+. + +... ....-.|-.|-..
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 444443333344578999999999999999976553 3 2222 2344567777543
No 76
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=66.68 E-value=1.4 Score=58.84 Aligned_cols=51 Identities=22% Similarity=0.634 Sum_probs=39.7
Q ss_pred ccccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccccccc
Q 002201 454 FCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFN 510 (954)
Q Consensus 454 yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k~~ 510 (954)
.|.+|.+.-. ...|+-|+.|..|+|.-|.+..-. ..+..++.||.|+....
T Consensus 1110 ~c~~cr~k~~---~~~m~lc~~c~~~~h~~C~rp~~~---~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1110 LCKVCRRKKQ---DEKMLLCDECLSGFHLFCLRPALS---SVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhccc---chhhhhhHhhhhhHHHHhhhhhhc---cCCcCCccCCccchhhh
Confidence 4666665332 357999999999999999876654 45678899999998774
No 77
>KOG4333 consensus Nuclear DEAF-1 related transcriptional regulator (suppressin) and related SAND domain proteins [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=65.90 E-value=3.4 Score=48.53 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=57.0
Q ss_pred cCCCCccCCCceeeeecccceeeecccc---ceeeeecccCCcccccchhhhccCC-Ccccccccchhh
Q 002201 527 KNNGQLVLPNNVTVLCSGVEGIYYPSLH---LVVCKCGFCGTEKLALSDWERHTGS-KLRNWRTSVRML 591 (954)
Q Consensus 527 ~~~~~~~~p~~~~v~c~~veG~~~~~~~---gi~ckC~~c~~~~~spsefE~h~G~-r~K~wk~Sirm~ 591 (954)
..+.....+--++++||...|.++..++ ||.-+|+.-+++-++|-+|-.++|- +-|.|+.+|++.
T Consensus 78 ~a~~~~~~~~~~~~tcG~~~~~l~~~~f~cPgi~~~cv~~~~~litPk~f~~l~~k~~~kDwk~~Ir~~ 146 (425)
T KOG4333|consen 78 EANADPEGRIVYPATCGASKGNLHTKLFACPGISVKCVEVGNELITPKQFTTLGGKSKQKDWKGAIRVS 146 (425)
T ss_pred CccCCccceeeeccccccccceeEEeeeecCCcccceeeecceeeCcccccccccccccccchhheeec
Confidence 3445666667788999999999999999 9999999999988999999999998 999999999953
No 78
>PF12773 DZR: Double zinc ribbon
Probab=65.68 E-value=5 Score=32.76 Aligned_cols=7 Identities=29% Similarity=0.861 Sum_probs=3.4
Q ss_pred ccccccc
Q 002201 454 FCGICKK 460 (954)
Q Consensus 454 yCpiC~k 460 (954)
+||.|+.
T Consensus 31 ~C~~Cg~ 37 (50)
T PF12773_consen 31 ICPNCGA 37 (50)
T ss_pred CCcCCcC
Confidence 4555544
No 79
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=65.40 E-value=3.1 Score=47.85 Aligned_cols=49 Identities=27% Similarity=0.523 Sum_probs=36.3
Q ss_pred cccccccCCCCCCeeeCCCCCceeeccc--cccccccccccCCCcccCCcccccc
Q 002201 457 ICKKVWNHSDGGSWVRCDGCKVWVHAEC--DKISSSHFKDLGGSEYYCPACKAKF 509 (954)
Q Consensus 457 iC~k~y~~~d~~~~VqCd~C~~WvH~~C--d~~~~~~~e~~~~~~Y~Cp~Cr~k~ 509 (954)
.|.+.+++++ .|++|+.|..|.|.+| .+++.... .....|+|..|....
T Consensus 64 ~~~~~~~p~~--~~~~cd~C~~~~~~ec~~v~~~~~e~--p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 64 KCYKPCDPDD--LMEQCDLCEDWYHGECWEVGTAEKEA--PKEDPKVCDECKEAQ 114 (345)
T ss_pred hcccccCchh--hhhccccccccccccccccCchhhcC--Cccccccccccchhh
Confidence 4444444332 7999999999999999 88877533 356789999998554
No 80
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=64.46 E-value=5.4 Score=32.82 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCCcccccCCCccCCCCceEEcCCCCccccCccccCc
Q 002201 635 TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAR 671 (954)
Q Consensus 635 ~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~ 671 (954)
....|++|...-......-+.|..|++.+|..|....
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 3568999998642234678999999999999998554
No 81
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=64.23 E-value=3.5 Score=50.93 Aligned_cols=46 Identities=30% Similarity=0.684 Sum_probs=32.7
Q ss_pred cccccccccCCCCCCeeeCCCCCce-eeccccccccccccccCCCcccCCccc
Q 002201 455 CGICKKVWNHSDGGSWVRCDGCKVW-VHAECDKISSSHFKDLGGSEYYCPACK 506 (954)
Q Consensus 455 CpiC~k~y~~~d~~~~VqCd~C~~W-vH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr 506 (954)
|-||. .++...-||.||.|+.- +|.-|-...-. + .+...|+|+.|.
T Consensus 218 C~IC~---~~DpEdVLLLCDsCN~~~YH~YCLDPdl~--e-iP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 218 CDICT---VHDPEDVLLLCDSCNKVYYHVYCLDPDLS--E-SPVNEWYCTNCS 264 (1134)
T ss_pred ceeec---cCChHHhheeecccccceeeccccCcccc--c-ccccceecCcch
Confidence 44554 34444679999999977 99999755432 2 256789999995
No 82
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=62.86 E-value=3.7 Score=34.09 Aligned_cols=33 Identities=27% Similarity=0.853 Sum_probs=16.3
Q ss_pred CeeeCCCCCceeeccccccccccccccCCCcccCCc
Q 002201 469 SWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPA 504 (954)
Q Consensus 469 ~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~ 504 (954)
.|||||.|.+|=.+. ...... .+.+++ .++|..
T Consensus 2 ~WVQCd~C~KWR~lp-~~~~~~-~~~~~d-~W~C~~ 34 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP-EEVDPI-REELPD-PWYCSM 34 (50)
T ss_dssp EEEE-TTT--EEEE--CCHHCT-SCCSST-T--GGG
T ss_pred eEEECCCCCceeeCC-hhhCcc-cccCCC-eEEcCC
Confidence 499999999998877 322221 123444 788865
No 83
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=59.74 E-value=5 Score=48.16 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=35.0
Q ss_pred CCCeeeCCCCCceeeccccccccccccccCCCcccCCcccccccccc
Q 002201 467 GGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFNFEL 513 (954)
Q Consensus 467 ~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k~~~~~ 513 (954)
++.|+||+.|.+|.|.-|.++....- ...|.|..|+.......
T Consensus 98 ~g~~i~c~~c~~Wqh~~C~g~~~~~~----p~~y~c~~c~~~~~~~~ 140 (508)
T KOG1844|consen 98 EGLMIQCDWCGRWQHKICCGSFKSTK----PDKYVCEICTPRNKEVE 140 (508)
T ss_pred CceeeCCcccCcccCceeeeecCCCC----chhceeeeeccccccch
Confidence 67899999999999999998777521 46899999997665543
No 84
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=59.69 E-value=4.3 Score=41.31 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.7
Q ss_pred ccCccccCc--cccCCCceeEecccc
Q 002201 663 VHQECYGAR--NVQDFTSWVFEIVYT 686 (954)
Q Consensus 663 vH~~CyGv~--~~p~~~~W~C~~C~~ 686 (954)
+|..|+.++ .+|+ |.|+|..|..
T Consensus 2 ~H~~CL~Ppl~~~P~-g~W~Cp~C~~ 26 (148)
T cd04718 2 FHLCCLRPPLKEVPE-GDWICPFCEV 26 (148)
T ss_pred cccccCCCCCCCCCC-CCcCCCCCcC
Confidence 799999987 5788 9999999998
No 85
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=59.63 E-value=2.3 Score=56.86 Aligned_cols=48 Identities=23% Similarity=0.571 Sum_probs=40.5
Q ss_pred CCcccccCCCccCCCCceEEcCCCCccccCccccCc--cccCCCceeEecccc
Q 002201 636 TERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAR--NVQDFTSWVFEIVYT 686 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~--~~p~~~~W~C~~C~~ 686 (954)
...|-||...... ..++.|+.|...||..|.-+. .+|. +.|+|..|.-
T Consensus 1108 ~~~c~~cr~k~~~--~~m~lc~~c~~~~h~~C~rp~~~~~~~-~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQD--EKMLLCDECLSGFHLFCLRPALSSVPP-GDWMCPSCRK 1157 (1404)
T ss_pred hhhhhhhhhcccc--hhhhhhHhhhhhHHHHhhhhhhccCCc-CCccCCccch
Confidence 3579999986543 589999999999999999876 4566 8999999987
No 86
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=59.42 E-value=1.1 Score=51.54 Aligned_cols=64 Identities=25% Similarity=0.518 Sum_probs=44.3
Q ss_pred cccccHHhhhcCCccccccccccCCCCCCeeeCCCCCceeeccccccccccc--cccCCCcccCCcccc
Q 002201 441 FCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHF--KDLGGSEYYCPACKA 507 (954)
Q Consensus 441 lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~--e~~~~~~Y~Cp~Cr~ 507 (954)
+|..++.-+ .+.+|..|+-.+..+ .-|++|+.|..|+|..|..+..... .......|+|+.|..
T Consensus 229 ~~~~~~~~~-~~~~~~~cg~~~~~~--~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~ 294 (345)
T KOG1632|consen 229 VDESEAPDY-SKLICDPCGLSDANK--KFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTV 294 (345)
T ss_pred CCccccccc-ccccccccCcchHHH--HHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceee
Confidence 444444332 345677777666544 5699999999999999998877532 222236699999986
No 87
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=58.67 E-value=4 Score=30.12 Aligned_cols=28 Identities=32% Similarity=0.768 Sum_probs=12.4
Q ss_pred cccccCCCccCCCCceEEcCCCCccccCcc
Q 002201 638 RCAVCRWVEDWDYNKIIICNRCQIAVHQEC 667 (954)
Q Consensus 638 ~C~VC~~~e~~~~~~Li~C~~C~~avH~~C 667 (954)
.|.+|+..... +....|..|+..+|..|
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S----EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC--CceEECccCCCccChhc
Confidence 58999886542 47999999999999988
No 88
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=57.98 E-value=4.9 Score=35.71 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=13.7
Q ss_pred CcccccCCCcc-CCCCceEEcC--CCCccccCccccC
Q 002201 637 ERCAVCRWVED-WDYNKIIICN--RCQIAVHQECYGA 670 (954)
Q Consensus 637 ~~C~VC~~~e~-~~~~~Li~C~--~C~~avH~~CyGv 670 (954)
..|.||..... .+.-..+.|+ .|+..||..|+-.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 46999998754 3334578998 8999999999854
No 89
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=57.15 E-value=6.2 Score=31.64 Aligned_cols=35 Identities=23% Similarity=0.522 Sum_probs=26.3
Q ss_pred CCcccccCCCccCCCCceEEcCCCCccccCccccC
Q 002201 636 TERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGA 670 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv 670 (954)
...|.+|...-..-...-+.|..|++.+|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 45799998753221246778999999999999754
No 90
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=57.12 E-value=8.7 Score=28.50 Aligned_cols=28 Identities=32% Similarity=0.745 Sum_probs=22.6
Q ss_pred cccccCCCccCCCCc-eEEcCCCCccccCccc
Q 002201 638 RCAVCRWVEDWDYNK-IIICNRCQIAVHQECY 668 (954)
Q Consensus 638 ~C~VC~~~e~~~~~~-Li~C~~C~~avH~~Cy 668 (954)
.|.||+.... +. ...|+.|...+|..|.
T Consensus 2 ~C~~C~~~~~---~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKID---GFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcC---CCEeEEeCCCCCeEcCccC
Confidence 5999977544 33 9999999999999883
No 91
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=56.03 E-value=7.4 Score=51.01 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=22.5
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccHHhhhcCCccccccccc
Q 002201 414 RPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKKVW 462 (954)
Q Consensus 414 ~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpiC~k~y 462 (954)
+.|..||.-++. .+|..|+.....-..||-|+.-.
T Consensus 668 rkCPkCG~~t~~--------------~fCP~CGs~te~vy~CPsCGaev 702 (1337)
T PRK14714 668 RRCPSCGTETYE--------------NRCPDCGTHTEPVYVCPDCGAEV 702 (1337)
T ss_pred EECCCCCCcccc--------------ccCcccCCcCCCceeCccCCCcc
Confidence 558899986542 27777876654444577776543
No 92
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=55.78 E-value=11 Score=30.93 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=26.7
Q ss_pred hcCCccccccccccCCCCCCeeeCCCCCceeecccccc
Q 002201 450 KSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKI 487 (954)
Q Consensus 450 ~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~ 487 (954)
.+..+|-+|++..-. ....-+.|..|...+|.+|...
T Consensus 9 ~~~~~C~~C~~~i~g-~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWG-LGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECS-SSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCC-CCCCeEEECCCCChHhhhhhhh
Confidence 345678888776633 5567899999999999999743
No 93
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=54.33 E-value=18 Score=42.49 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=41.9
Q ss_pred CCCccCCCCCCCCCCCCccccccccccccccccccHHhhhcC--CccccccccccCCCCCC-eeeCCCCCceeeccc
Q 002201 411 KDKRPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSK--HFCGICKKVWNHSDGGS-WVRCDGCKVWVHAEC 484 (954)
Q Consensus 411 k~c~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg--~yCpiC~k~y~~~d~~~-~VqCd~C~~WvH~~C 484 (954)
..|-+|..|-.++.+- +-. . =..|...|-.|+ +++ --|-+|++..-+.++.+ .|.=..=+|-||.+|
T Consensus 358 p~CF~Cv~C~r~ldgi-pFt-v--d~~n~v~Cv~df---h~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv~C 427 (468)
T KOG1701|consen 358 PGCFTCVVCARCLDGI-PFT-V--DSQNNVYCVPDF---HKKFAPRCSVCGNPILPRDGKDETVRVVAMDRDFHVNC 427 (468)
T ss_pred CCceEEEEeccccCCc-ccc-c--cCCCceeeehhh---hhhcCcchhhccCCccCCCCCcceEEEEEccccccccc
Confidence 3566666666666542 111 1 123788899986 333 35999999888887743 444444568888888
No 94
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=53.46 E-value=5.1 Score=35.58 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=21.5
Q ss_pred CccccccccccCCCCCCeeeCC--CCCceeeccccccccccccc----cCCCcccCCccccccc
Q 002201 453 HFCGICKKVWNHSDGGSWVRCD--GCKVWVHAECDKISSSHFKD----LGGSEYYCPACKAKFN 510 (954)
Q Consensus 453 ~yCpiC~k~y~~~d~~~~VqCd--~C~~WvH~~Cd~~~~~~~e~----~~~~~Y~Cp~Cr~k~~ 510 (954)
.-|+||.....+++....+-|+ .|..-+|..|-..--...+. +....=.||.|+....
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 3599998765544445678998 99999999996321111111 1122336999997653
No 95
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=51.74 E-value=6.1 Score=29.16 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=12.6
Q ss_pred eEeeeccCCC--eeeecCCcCcccchhhh
Q 002201 737 ICVICKQIHG--SCTQCCKCSTYYHAMCA 763 (954)
Q Consensus 737 ~C~iC~~~~G--a~IqC~~C~~aFHv~CA 763 (954)
.|.+|+.... ..-.|..|.-.+|..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 4888987643 67899999999999997
No 96
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=51.24 E-value=7.6 Score=33.59 Aligned_cols=13 Identities=23% Similarity=0.866 Sum_probs=9.7
Q ss_pred CccCCCCCCCCCC
Q 002201 413 KRPCDGCGMTLPS 425 (954)
Q Consensus 413 c~~C~~CG~~~~~ 425 (954)
-.+|.+||..+..
T Consensus 7 ~~~CtSCg~~i~~ 19 (59)
T PRK14890 7 PPKCTSCGIEIAP 19 (59)
T ss_pred CccccCCCCcccC
Confidence 3468899988875
No 97
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=50.38 E-value=6.9 Score=34.80 Aligned_cols=37 Identities=24% Similarity=0.641 Sum_probs=21.6
Q ss_pred CCeeeCCCCC-ceeeccccccccccccc--cCCCcccCCc
Q 002201 468 GSWVRCDGCK-VWVHAECDKISSSHFKD--LGGSEYYCPA 504 (954)
Q Consensus 468 ~~~VqCd~C~-~WvH~~Cd~~~~~~~e~--~~~~~Y~Cp~ 504 (954)
..||-|..=. +|||+.|..++...+-. +.+..|+|-.
T Consensus 28 PAMI~cs~~~GHWvhaqCm~LsE~~L~~LSq~n~KYfC~d 67 (78)
T PF13341_consen 28 PAMIFCSRGGGHWVHAQCMDLSETMLIQLSQENTKYFCND 67 (78)
T ss_dssp --EEEE-STT-EEEETGGGT--HHHHHHHHHSSS-B--TT
T ss_pred ceEEEEeCCCceEeEeecccchHHHHHHHccCCceEEEhh
Confidence 3588887544 99999999998876433 3578899964
No 98
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=49.82 E-value=27 Score=33.97 Aligned_cols=51 Identities=18% Similarity=0.403 Sum_probs=36.7
Q ss_pred CCCcccccCCCccCCCCceEEcCCCCccccCccccCccccCCCceeEeccccC
Q 002201 635 TTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYTE 687 (954)
Q Consensus 635 ~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~~ 687 (954)
....|..|...-..-.|.-..|..|...|=..|-+. .+....|+|..|...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHHH
Confidence 466899998754344455689999999999999665 222278999999863
No 99
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=46.30 E-value=16 Score=30.29 Aligned_cols=40 Identities=30% Similarity=0.741 Sum_probs=22.0
Q ss_pred ccccccccccCCCCCCeeeCCCCCceeeccccccccc-cccccCCCcccCCccccc
Q 002201 454 FCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSS-HFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 454 yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~-~~e~~~~~~Y~Cp~Cr~k 508 (954)
.|.+|+-+|+...+... .+|..+ .++.|+ .+|.||.|...
T Consensus 3 ~C~~CgyvYd~~~Gd~~--------------~~i~pGt~F~~Lp-~~w~CP~C~a~ 43 (47)
T PF00301_consen 3 QCPVCGYVYDPEKGDPE--------------NGIPPGTPFEDLP-DDWVCPVCGAP 43 (47)
T ss_dssp EETTTSBEEETTTBBGG--------------GTB-TT--GGGS--TT-B-TTTSSB
T ss_pred CCCCCCEEEcCCcCCcc--------------cCcCCCCCHHHCC-CCCcCcCCCCc
Confidence 38888888887754110 123332 256664 47999999854
No 100
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=46.20 E-value=14 Score=46.51 Aligned_cols=55 Identities=22% Similarity=0.532 Sum_probs=41.3
Q ss_pred ccccccccccccHHhhhcCCccccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccccc
Q 002201 434 STTGDQLFCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 434 ~w~~~~~lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
+-...+++|..|+...+ ||-|.-.+.-+....-+.|+.|.+- ......||.|.+.
T Consensus 430 RGys~~l~C~~Cg~v~~----Cp~Cd~~lt~H~~~~~L~CH~Cg~~----------------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 430 RGYAPLLLCRDCGYIAE----CPNCDSPLTLHKATGQLRCHYCGYQ----------------EPIPQSCPECGSE 484 (730)
T ss_pred CCccceeecccCCCccc----CCCCCcceEEecCCCeeEeCCCCCC----------------CCCCCCCCCCCCC
Confidence 33446789999976666 9999887776667788999998741 3456889999866
No 101
>PRK04023 DNA polymerase II large subunit; Validated
Probab=45.60 E-value=14 Score=47.39 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=12.7
Q ss_pred CccccCCCccccCCccee
Q 002201 101 AVEVSRPPLVRTSRGRVQ 118 (954)
Q Consensus 101 ~~~~~~~~~~~~srgr~~ 118 (954)
++..--+|.||--.|-|.
T Consensus 364 PvdsIegPtVrL~nGdV~ 381 (1121)
T PRK04023 364 PVDSIEGPTVRLKNGDVV 381 (1121)
T ss_pred ccccCcCCeEEecCCCEE
Confidence 334456899998888765
No 102
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=44.40 E-value=7.4 Score=49.06 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCccCCCCCCCCCCCCccccccccccccccccccHHhhhcCCcccccccccc
Q 002201 412 DKRPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKKVWN 463 (954)
Q Consensus 412 ~c~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpiC~k~y~ 463 (954)
.-+.|.+||..+. +..|..|+.....-.+||.|+....
T Consensus 654 ~~r~Cp~Cg~~t~--------------~~~Cp~CG~~T~~~~~Cp~C~~~~~ 691 (900)
T PF03833_consen 654 GRRRCPKCGKETF--------------YNRCPECGSHTEPVYVCPDCGIEVE 691 (900)
T ss_dssp ----------------------------------------------------
T ss_pred ecccCcccCCcch--------------hhcCcccCCccccceeccccccccC
Confidence 4577999998863 4679999988888888999987554
No 103
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=43.86 E-value=9.8 Score=30.15 Aligned_cols=34 Identities=24% Similarity=0.566 Sum_probs=25.6
Q ss_pred CCcccccCCCccCCCCceEEcCCCCccccCccccC
Q 002201 636 TERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGA 670 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv 670 (954)
...|.+|...-. ....-+.|..|++.+|..|...
T Consensus 11 ~~~C~~C~~~i~-~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIW-GSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccC-cCCCCcCCCCCCchHHHHHHhh
Confidence 457999988633 2224678999999999999754
No 104
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=43.85 E-value=7.7 Score=34.62 Aligned_cols=45 Identities=20% Similarity=0.472 Sum_probs=25.4
Q ss_pred cccccccccCCC-------CCCeeeCCCCCceeeccccccccccccccCCCcccCCccc
Q 002201 455 CGICKKVWNHSD-------GGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACK 506 (954)
Q Consensus 455 CpiC~k~y~~~d-------~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr 506 (954)
|+||...+.+.. ..-.+.=..|.+.||..|.. ..-...-.||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~-------~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS-------QWLKQNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH-------HHHTTSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH-------HHHhcCCcCCCCC
Confidence 666666663321 12233445699999999952 2112223999997
No 105
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=43.22 E-value=19 Score=30.16 Aligned_cols=40 Identities=30% Similarity=0.762 Sum_probs=24.7
Q ss_pred ccccccccccCCCCCCeeeCCCCCceeecccccccccc-ccccCCCcccCCccccc
Q 002201 454 FCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSH-FKDLGGSEYYCPACKAK 508 (954)
Q Consensus 454 yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~-~e~~~~~~Y~Cp~Cr~k 508 (954)
.|.+|+-+|+++.+..- .++..+. +++|++ +|.||.|...
T Consensus 3 ~C~~CgyiYd~~~Gd~~--------------~~i~pGt~f~~Lp~-~w~CP~C~a~ 43 (50)
T cd00730 3 ECRICGYIYDPAEGDPD--------------EGIPPGTPFEDLPD-DWVCPVCGAG 43 (50)
T ss_pred CCCCCCeEECCCCCCcc--------------cCcCCCCCHhHCCC-CCCCCCCCCc
Confidence 38888888887654110 1233322 555554 8999999854
No 106
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=43.04 E-value=46 Score=32.84 Aligned_cols=59 Identities=24% Similarity=0.229 Sum_probs=38.9
Q ss_pred CCCCCCCCEEEEec-CCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCCcEEEeeCCceecC
Q 002201 256 PEDFYSGDIVWAKS-GKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQRDYAWVKRGLIFPF 327 (954)
Q Consensus 256 ~~~f~~GDlVWAK~-g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~dyaWv~~~~i~Pf 327 (954)
...+.+||-|.|+- ..++.|=||.|+.-. +.- ......+.|.||. +..++++.+.++.-
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~----~~~--~~~~~~~~V~f~n-------g~~~~vp~~~~~~I 112 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGP----ERR--ASEDKEYTVRFYN-------GKTAKVPRGEVIWI 112 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECc----ccc--ccCCceEEEEEEC-------CCCCccchhhEEEC
Confidence 34688999999998 226999999998422 111 2235679999999 22445555444433
No 107
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=42.49 E-value=15 Score=40.79 Aligned_cols=95 Identities=23% Similarity=0.550 Sum_probs=47.7
Q ss_pred CCccCCCCCCCCCCCCc-cccccccc-----cccccccccHHhhhc-------------CCccccccccccC--------
Q 002201 412 DKRPCDGCGMTLPSKSA-KKIKASTT-----GDQLFCRTCAKLMKS-------------KHFCGICKKVWNH-------- 464 (954)
Q Consensus 412 ~c~~C~~CG~~~~~~~~-~k~~~~w~-----~~~~lC~~C~~l~~k-------------g~yCpiC~k~y~~-------- 464 (954)
..-.|..||...+-.+- ++ -.+.| ---.-|..|.+.|.+ ..-|+||+|.+..
T Consensus 129 ~r~~c~eCgk~ysT~snLsr-HkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHi 207 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSR-HKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHI 207 (279)
T ss_pred Cceeccccccccccccccch-hhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhccc
Confidence 45569999977654210 11 00111 012457777665432 3357777777653
Q ss_pred --CCCCCeeeCCCCCceeecccccccccccccc-CCCcccCCcccccc
Q 002201 465 --SDGGSWVRCDGCKVWVHAECDKISSSHFKDL-GGSEYYCPACKAKF 509 (954)
Q Consensus 465 --~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~-~~~~Y~Cp~Cr~k~ 509 (954)
+.++.=..|..|.|-|=.. -++- .++... ....|.|+.|.+.+
T Consensus 208 RTHTGEKPF~C~hC~kAFADR-SNLR-AHmQTHS~~K~~qC~~C~KsF 253 (279)
T KOG2462|consen 208 RTHTGEKPFSCPHCGKAFADR-SNLR-AHMQTHSDVKKHQCPRCGKSF 253 (279)
T ss_pred ccccCCCCccCCcccchhcch-HHHH-HHHHhhcCCccccCcchhhHH
Confidence 2344556677776665322 0000 112211 23578888887665
No 108
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=42.26 E-value=21 Score=38.07 Aligned_cols=36 Identities=17% Similarity=0.636 Sum_probs=30.3
Q ss_pred CCCcccccCCCc---cCCCCceEEcCCCCccccCccccC
Q 002201 635 TTERCAVCRWVE---DWDYNKIIICNRCQIAVHQECYGA 670 (954)
Q Consensus 635 ~~~~C~VC~~~e---~~~~~~Li~C~~C~~avH~~CyGv 670 (954)
....|.+|.+.+ +++.+..+.|..|+..+|..|+.-
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC
Confidence 457899998765 567778999999999999999973
No 109
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=41.32 E-value=13 Score=27.49 Aligned_cols=27 Identities=30% Similarity=0.800 Sum_probs=22.1
Q ss_pred eEeeeccC-CCe-eeecCCcCcccchhhh
Q 002201 737 ICVICKQI-HGS-CTQCCKCSTYYHAMCA 763 (954)
Q Consensus 737 ~C~iC~~~-~Ga-~IqC~~C~~aFHv~CA 763 (954)
.|.+|++. .|. .-.|..|...+|+.||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 48889864 555 7799999999999997
No 110
>PF12773 DZR: Double zinc ribbon
Probab=40.51 E-value=14 Score=30.07 Aligned_cols=38 Identities=26% Similarity=0.704 Sum_probs=25.7
Q ss_pred CccCCCCCCCCCCCCccccccccccccccccccHHhhh-cCCcccccc
Q 002201 413 KRPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMK-SKHFCGICK 459 (954)
Q Consensus 413 c~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~-kg~yCpiC~ 459 (954)
-..|..||+.++. -.....+|..|..... ...||+.|+
T Consensus 12 ~~fC~~CG~~l~~---------~~~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 12 AKFCPHCGTPLPP---------PDQSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred ccCChhhcCChhh---------ccCCCCCCcCCcCCCcCCcCccCccc
Confidence 4568888988871 1124568999977655 455888875
No 111
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=39.99 E-value=22 Score=27.61 Aligned_cols=27 Identities=30% Similarity=0.628 Sum_probs=20.1
Q ss_pred ccccccccccCCCC-----CCeeeCCCCCcee
Q 002201 454 FCGICKKVWNHSDG-----GSWVRCDGCKVWV 480 (954)
Q Consensus 454 yCpiC~k~y~~~d~-----~~~VqCd~C~~Wv 480 (954)
-||-|+..|.-+|. +-.|+|..|..-+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 48888888877753 5688998888644
No 112
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=39.70 E-value=10 Score=34.66 Aligned_cols=29 Identities=34% Similarity=1.054 Sum_probs=20.9
Q ss_pred eEeeeccC-CCeeeecC--------------CcCcccchhhhhh
Q 002201 737 ICVICKQI-HGSCTQCC--------------KCSTYYHAMCASR 765 (954)
Q Consensus 737 ~C~iC~~~-~Ga~IqC~--------------~C~~aFHv~CA~~ 765 (954)
.|.||+.. .|.|++|. .|..+||..|..+
T Consensus 22 ~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~r 65 (88)
T COG5194 22 VCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYR 65 (88)
T ss_pred hhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHH
Confidence 47777643 56666662 4899999999855
No 113
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=39.56 E-value=12 Score=29.07 Aligned_cols=32 Identities=25% Similarity=0.724 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCccccccccccccccccccHHhhhc
Q 002201 416 CDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKS 451 (954)
Q Consensus 416 C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~k 451 (954)
|.+||++... .+.+ ...++.+||+.|+..+++
T Consensus 1 C~~C~tt~t~-~WR~---~~~g~~~LCn~Cg~~~kk 32 (36)
T PF00320_consen 1 CSNCGTTETP-QWRR---GPNGNRTLCNACGLYYKK 32 (36)
T ss_dssp -TTT--ST-S-SEEE---ETTSEE-EEHHHHHHHHH
T ss_pred CcCCcCCCCc-hhhc---CCCCCCHHHHHHHHHHHH
Confidence 7889988643 2222 222456699999877764
No 114
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.41 E-value=20 Score=43.40 Aligned_cols=53 Identities=23% Similarity=0.559 Sum_probs=0.0
Q ss_pred ccccccccccHHhhhcCCccccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccccc
Q 002201 436 TGDQLFCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 436 ~~~~~lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
...+.+|..|+.... ||.|+-...-+.....+.|+.|. ........||.|.+.
T Consensus 210 ya~~~~C~~Cg~~~~----C~~C~~~l~~h~~~~~l~Ch~Cg----------------~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 210 YSKNLLCRSCGYILC----CPNCDVSLTYHKKEGKLRCHYCG----------------YQEPIPKTCPQCGSE 262 (505)
T ss_pred CCCeeEhhhCcCccC----CCCCCCceEEecCCCeEEcCCCc----------------CcCCCCCCCCCCCCC
No 115
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=38.73 E-value=18 Score=34.30 Aligned_cols=30 Identities=27% Similarity=0.657 Sum_probs=25.6
Q ss_pred CCcccccCCCccCCCCceEEcCC--CCccccCcccc
Q 002201 636 TERCAVCRWVEDWDYNKIIICNR--CQIAVHQECYG 669 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~--C~~avH~~CyG 669 (954)
...|.+|+.. .+..+.|.. |..+||..|.-
T Consensus 55 ~~~C~iC~~~----~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKS----GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCC----CceeEEcCCCCCCcCCCHHHHH
Confidence 4589999986 378999986 99999999963
No 116
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=38.70 E-value=22 Score=27.76 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=21.1
Q ss_pred ccccccccccCCCC-----CCeeeCCCCCceee
Q 002201 454 FCGICKKVWNHSDG-----GSWVRCDGCKVWVH 481 (954)
Q Consensus 454 yCpiC~k~y~~~d~-----~~~VqCd~C~~WvH 481 (954)
-||-|+..|.-++. +.+|.|..|..-++
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 38888888877653 56899999986554
No 117
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=38.09 E-value=12 Score=34.67 Aligned_cols=64 Identities=25% Similarity=0.452 Sum_probs=35.4
Q ss_pred ccccccccHHhhhcCCccccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCcccccccc
Q 002201 438 DQLFCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFNF 511 (954)
Q Consensus 438 ~~~lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k~~~ 511 (954)
+--.|.-|...++ ..||.|.- +.|+-..|-+ .|.+-||..|...=-. . +...-.||.||.....
T Consensus 20 ~dd~CgICr~~fd--g~Cp~Ck~---Pgd~Cplv~g-~C~H~FH~hCI~kWl~---~-~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFD--GCCPDCKF---PGDDCPLVWG-KCSHNFHMHCILKWLS---T-QSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccc--cCCCCccC---CCCCCceeec-cCccHHHHHHHHHHHc---c-ccCCCCCCCcCCeeee
Confidence 3445555554444 33555543 1222334444 4999999999632111 1 1224599999976643
No 118
>PRK14873 primosome assembly protein PriA; Provisional
Probab=36.09 E-value=22 Score=44.51 Aligned_cols=51 Identities=24% Similarity=0.609 Sum_probs=35.5
Q ss_pred cccccccccHHhhhcCCccccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccccc
Q 002201 437 GDQLFCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 437 ~~~~lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
..+.+|..|..... ||-|+-...-+.....+.|+.|.. + . ..+.||.|.+.
T Consensus 381 ap~l~C~~Cg~~~~----C~~C~~~L~~h~~~~~l~Ch~CG~--~--------------~-~p~~Cp~Cgs~ 431 (665)
T PRK14873 381 VPSLACARCRTPAR----CRHCTGPLGLPSAGGTPRCRWCGR--A--------------A-PDWRCPRCGSD 431 (665)
T ss_pred CCeeEhhhCcCeeE----CCCCCCceeEecCCCeeECCCCcC--C--------------C-cCccCCCCcCC
Confidence 36788999976665 999986544444456899999873 0 1 25789999754
No 119
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=35.75 E-value=20 Score=28.72 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=24.7
Q ss_pred CCccccccccccCCCCCCeeeCCCCCceeecccccc
Q 002201 452 KHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKI 487 (954)
Q Consensus 452 g~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~ 487 (954)
..+|-+|++....- ....+.|+.|..-+|..|...
T Consensus 11 ~~~C~~C~~~i~~~-~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGL-FKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhcc-ccceeEcCCCCCchhhhhhcc
Confidence 45566676654321 356789999999999999643
No 120
>PHA02929 N1R/p28-like protein; Provisional
Probab=35.60 E-value=18 Score=39.69 Aligned_cols=55 Identities=20% Similarity=0.365 Sum_probs=34.8
Q ss_pred cCCccccccccccCCCCC--CeeeCCCCCceeeccccccccccccccCCCcccCCccccccccc
Q 002201 451 SKHFCGICKKVWNHSDGG--SWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFNFE 512 (954)
Q Consensus 451 kg~yCpiC~k~y~~~d~~--~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k~~~~ 512 (954)
+..-|+||...+...... ....=..|.+.||.+|...-- ...-.||.||.....+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl-------~~~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWK-------KEKNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHH-------hcCCCCCCCCCEeeEE
Confidence 345799998865433211 123335799999999964321 2234899999877544
No 121
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=35.60 E-value=26 Score=37.38 Aligned_cols=58 Identities=26% Similarity=0.554 Sum_probs=41.4
Q ss_pred cccccccccccHHhhhcCCcccccccc--ccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCcccc
Q 002201 435 TTGDQLFCRTCAKLMKSKHFCGICKKV--WNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKA 507 (954)
Q Consensus 435 w~~~~~lC~~C~~l~~kg~yCpiC~k~--y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~ 507 (954)
|..+-.-|..|. .+|..|.+|... .-+-+...-++|..|.--+|.+|-.. =.||.|..
T Consensus 138 ~~~HV~~C~lC~---~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------------~~CpkC~R 197 (202)
T PF13901_consen 138 AEKHVYSCELCQ---QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------------KSCPKCAR 197 (202)
T ss_pred HHHHHHHhHHHH---hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------------CCCCCcHh
Confidence 444555899996 679999999742 11122357899999999999999531 23999974
No 122
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=35.59 E-value=23 Score=40.79 Aligned_cols=88 Identities=20% Similarity=0.341 Sum_probs=49.4
Q ss_pred HhhhcCCcccccccc-ccCCCCCCeeeC------CCCCceeeccccccccccccccCCCcccCCcccccccccccccccc
Q 002201 447 KLMKSKHFCGICKKV-WNHSDGGSWVRC------DGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKFNFELSDSERG 519 (954)
Q Consensus 447 ~l~~kg~yCpiC~k~-y~~~d~~~~VqC------d~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k~~~~~~~~~~~ 519 (954)
|+-+..+.|.||.-- .+++...-|-.= --|.+-+|.+|-+ .+-.-.-.||.||..--...+.--..
T Consensus 282 ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLk-------nW~ERqQTCPICr~p~ifd~~~~~~~ 354 (491)
T COG5243 282 QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLK-------NWLERQQTCPICRRPVIFDQSSPTPA 354 (491)
T ss_pred hhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHH-------HHHHhccCCCcccCccccccCCCCcC
Confidence 345677789999765 333321111111 1467789999943 33334578999996633322211113
Q ss_pred ccccccccCCCCccCCCceeee
Q 002201 520 QRKVKSNKNNGQLVLPNNVTVL 541 (954)
Q Consensus 520 ~~k~k~~~~~~~~~~p~~~~v~ 541 (954)
.+.+.....++|...|++.+.+
T Consensus 355 s~~v~nt~I~tq~~~~dnt~~~ 376 (491)
T COG5243 355 SPNVRNTQIATQVPNPDNTPTT 376 (491)
T ss_pred CcccccceecccCCCCCCCCcc
Confidence 3444444557788888877664
No 123
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=34.97 E-value=9.2 Score=34.25 Aligned_cols=36 Identities=31% Similarity=0.733 Sum_probs=22.5
Q ss_pred cCCCCCCCCCCCCccccccccccccccccccHHhhhcCCccccccc
Q 002201 415 PCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKK 460 (954)
Q Consensus 415 ~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpiC~k 460 (954)
.|+.|...+ .|.+....|..|.+.+.+--+||-|++
T Consensus 3 ~CP~C~~~L----------~~~~~~~~C~~C~~~~~~~a~CPdC~~ 38 (70)
T PF07191_consen 3 TCPKCQQEL----------EWQGGHYHCEACQKDYKKEAFCPDCGQ 38 (70)
T ss_dssp B-SSS-SBE----------EEETTEEEETTT--EEEEEEE-TTT-S
T ss_pred cCCCCCCcc----------EEeCCEEECccccccceecccCCCccc
Confidence 466776664 466677888888888888888888865
No 124
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=34.87 E-value=27 Score=43.58 Aligned_cols=48 Identities=21% Similarity=0.565 Sum_probs=30.5
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccccHHhhhcCCccccccccccCCCCCCeeeCCCCCc
Q 002201 414 RPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKV 478 (954)
Q Consensus 414 ~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~ 478 (954)
..|..||...+. +..+|..|+..... ..||-|+.... ...-.|..|..
T Consensus 2 ~~Cp~Cg~~n~~------------~akFC~~CG~~l~~-~~Cp~CG~~~~----~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFENPN------------NNRFCQKCGTSLTH-KPCPQCGTEVP----VDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCcCCC------------CCccccccCCCCCC-CcCCCCCCCCC----cccccccccCC
Confidence 468888887664 44578888655432 46888876433 23457777773
No 125
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=33.98 E-value=11 Score=46.11 Aligned_cols=55 Identities=24% Similarity=0.669 Sum_probs=37.9
Q ss_pred cccccHHhhhcCCccccccc---cccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCcccccc
Q 002201 441 FCRTCAKLMKSKHFCGICKK---VWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAKF 509 (954)
Q Consensus 441 lC~~C~~l~~kg~yCpiC~k---~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k~ 509 (954)
-|..|. .+|..|.+|.. +|.-. ...-..|+.|..|+|.+|-.-.. -.||.|-...
T Consensus 503 ~C~lC~---~~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r~s----------~~CPrC~R~q 560 (580)
T KOG1829|consen 503 ECDLCT---GKGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRRKS----------PCCPRCERRQ 560 (580)
T ss_pred hchhhc---cCeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhccC----------CCCCchHHHH
Confidence 388885 67889999943 12211 23468999999999999953322 2299996444
No 126
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=33.77 E-value=15 Score=29.03 Aligned_cols=43 Identities=14% Similarity=0.320 Sum_probs=27.1
Q ss_pred CcccccCCCccCCCCceEEcCCCCccccCccccCccccCCCceeEecc
Q 002201 637 ERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIV 684 (954)
Q Consensus 637 ~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C 684 (954)
+.|.||.+.-..+ +.++... |+-.||..|+..-.... -.|..|
T Consensus 1 d~C~IC~~~~~~~-~~~~~l~-C~H~fh~~Ci~~~~~~~---~~CP~C 43 (44)
T PF13639_consen 1 DECPICLEEFEDG-EKVVKLP-CGHVFHRSCIKEWLKRN---NSCPVC 43 (44)
T ss_dssp -CETTTTCBHHTT-SCEEEET-TSEEEEHHHHHHHHHHS---SB-TTT
T ss_pred CCCcCCChhhcCC-CeEEEcc-CCCeeCHHHHHHHHHhC---CcCCcc
Confidence 4699999875443 4555555 99999999975432221 256555
No 127
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=32.92 E-value=16 Score=27.77 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=28.3
Q ss_pred cccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccccc
Q 002201 455 CGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 455 CpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
|+||...+ ..-+.-..|.+-+|..|...... .....||.|+..
T Consensus 2 C~iC~~~~-----~~~~~~~~C~H~~c~~C~~~~~~------~~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEF-----REPVVLLPCGHVFCRSCIDKWLK------SGKNTCPLCRTP 44 (45)
T ss_pred CCcCchhh-----hCceEecCCCChhcHHHHHHHHH------hCcCCCCCCCCc
Confidence 78887765 22344556999999999642211 145779999853
No 128
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=32.34 E-value=31 Score=29.00 Aligned_cols=35 Identities=26% Similarity=0.606 Sum_probs=22.3
Q ss_pred CccCCCCCCCCCCCCccccccccc-cccccccccHHhhhcC
Q 002201 413 KRPCDGCGMTLPSKSAKKIKASTT-GDQLFCRTCAKLMKSK 452 (954)
Q Consensus 413 c~~C~~CG~~~~~~~~~k~~~~w~-~~~~lC~~C~~l~~kg 452 (954)
-..|.+||++..- .| ..+. +..+||+.|...+.+.
T Consensus 3 ~~~C~~C~~~~T~-~W----R~g~~g~~~LCnaCgl~~~k~ 38 (52)
T smart00401 3 GRSCSNCGTTETP-LW----RRGPSGNKTLCNACGLYYKKH 38 (52)
T ss_pred CCCcCCCCCCCCC-cc----ccCCCCCCcEeecccHHHHHc
Confidence 3579999977642 12 1223 3459999998777643
No 129
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=31.94 E-value=20 Score=34.47 Aligned_cols=34 Identities=15% Similarity=0.512 Sum_probs=29.4
Q ss_pred CCcccccCCCccCCCCceEEcCCCCccccCcccc
Q 002201 636 TERCAVCRWVEDWDYNKIIICNRCQIAVHQECYG 669 (954)
Q Consensus 636 ~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyG 669 (954)
.+.|.||+..+....+..|.|..|+..++..=.|
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EEeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 5689999888777888999999999999877666
No 130
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=31.87 E-value=28 Score=29.53 Aligned_cols=34 Identities=24% Similarity=0.651 Sum_probs=22.4
Q ss_pred cCCCCCCCCCCCCccccccccccccccccccHHhhhcC
Q 002201 415 PCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSK 452 (954)
Q Consensus 415 ~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg 452 (954)
+|.+||++..- .|.+ ...+..+||+.|..-+.+.
T Consensus 1 ~C~~C~~~~Tp-~WR~---g~~~~~~LCNaCgl~~~k~ 34 (54)
T cd00202 1 ACSNCGTTTTP-LWRR---GPSGGSTLCNACGLYWKKH 34 (54)
T ss_pred CCCCCCCCCCc-cccc---CCCCcchHHHHHHHHHHhc
Confidence 58999987542 2222 1125689999998777654
No 131
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=30.22 E-value=15 Score=44.42 Aligned_cols=78 Identities=26% Similarity=0.637 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC----CccccccccccccccccccHHhhh----cCCccccccccccCCCCCCeeeCCCCCceeecccccc
Q 002201 416 CDGCGMTLPSK----SAKKIKASTTGDQLFCRTCAKLMK----SKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKI 487 (954)
Q Consensus 416 C~~CG~~~~~~----~~~k~~~~w~~~~~lC~~C~~l~~----kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~ 487 (954)
|..||..+..+ ..-+ +||...+.|..|....+ .+.-=|.|.+.|+.--+ |.|..|.++|-..=...
T Consensus 136 cagc~~~lk~gq~llald~---qwhv~cfkc~~c~~vL~gey~skdg~pyce~dy~~~fg---vkc~~c~~fisgkvLqa 209 (670)
T KOG1044|consen 136 CAGCGEELKNGQALLALDK---QWHVSCFKCKSCSAVLNGEYMSKDGVPYCEKDYQAKFG---VKCEECEKFISGKVLQA 209 (670)
T ss_pred ccchhhhhhccceeeeecc---ceeeeeeehhhhcccccceeeccCCCcchhhhhhhhcC---eehHHhhhhhhhhhhhc
Q ss_pred ccccccccCCCcccCCcc
Q 002201 488 SSSHFKDLGGSEYYCPAC 505 (954)
Q Consensus 488 ~~~~~e~~~~~~Y~Cp~C 505 (954)
.+.+|. -.|..|
T Consensus 210 g~kh~H------PtCARC 221 (670)
T KOG1044|consen 210 GDKHFH------PTCARC 221 (670)
T ss_pred cCcccC------cchhhh
No 132
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=29.44 E-value=22 Score=28.08 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=24.1
Q ss_pred cCCccccccccccCCCCCCeeeCCCCCceeeccccc
Q 002201 451 SKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDK 486 (954)
Q Consensus 451 kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~ 486 (954)
...+|-+|++...... ..+.|..|+.-+|..|..
T Consensus 10 ~~~~C~~C~~~i~~~~--~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 10 KPTKCCVCRKSIWGSF--QGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCCccccccccCcCC--CCcCCCCCCchHHHHHHh
Confidence 3456777766543222 478999999999999964
No 133
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=28.65 E-value=59 Score=40.62 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhccccccccCCCCcccccCCCccCCCCceEEcCCCCccccCccccCc-cccCCCceeEecccc
Q 002201 615 RKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAR-NVQDFTSWVFEIVYT 686 (954)
Q Consensus 615 ~kq~l~~~l~~~~~pv~~~~~~~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~-~~p~~~~W~C~~C~~ 686 (954)
..++|.-.+=.++.|+..+.....|.+|+..-+ .--++|..|+..| +-|.... .+.+..-|+|..|.+
T Consensus 1096 ~ye~La~~iFsk~~p~d~~~~~vdc~~cg~~i~---~~~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH 1164 (1189)
T KOG2041|consen 1096 EYENLAFRIFSKNPPVDPNSAKVDCSVCGAKID---PYDLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKH 1164 (1189)
T ss_pred HHHHHHHHHhccCCCCCCCccceeeeecCCcCC---ccCCCChhhcCcC-ceeeccCCccccceEEEcccccc
Confidence 344555555567788888777888999987543 2346899999988 6676443 233446799999975
No 134
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=28.30 E-value=24 Score=32.87 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=30.3
Q ss_pred CCCcccccCCCcc---------CCCCceEEcCCCCccccCccccCccccCCCceeEecccc
Q 002201 635 TTERCAVCRWVED---------WDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT 686 (954)
Q Consensus 635 ~~~~C~VC~~~e~---------~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~ 686 (954)
+++.|.||+...+ .++-.|+.+ .|+-+||..|.-.=.......=.|..|+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCC
Confidence 3677777766432 122345554 49999999997432222113347888864
No 135
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=27.69 E-value=27 Score=38.94 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=47.5
Q ss_pred CCCccCCCCCCCCCCCCccccccccccccccccccHHhhh---------------cCCccccccccccCC----------
Q 002201 411 KDKRPCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMK---------------SKHFCGICKKVWNHS---------- 465 (954)
Q Consensus 411 k~c~~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~---------------kg~yCpiC~k~y~~~---------- 465 (954)
+.-..|..||...-.=+.-+|--+.|.-...|.-|++.+. |-..||.|+|++-|-
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTH 238 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTH 238 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhh
Confidence 3445589999765443344444455555778999998776 334699999999763
Q ss_pred CCCCeeeCCCCCcee
Q 002201 466 DGGSWVRCDGCKVWV 480 (954)
Q Consensus 466 d~~~~VqCd~C~~Wv 480 (954)
.+..--+|..|.+-|
T Consensus 239 S~~K~~qC~~C~KsF 253 (279)
T KOG2462|consen 239 SDVKKHQCPRCGKSF 253 (279)
T ss_pred cCCccccCcchhhHH
Confidence 123467999998755
No 136
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.44 E-value=32 Score=33.37 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=8.5
Q ss_pred ccccccccccCC
Q 002201 454 FCGICKKVWNHS 465 (954)
Q Consensus 454 yCpiC~k~y~~~ 465 (954)
.||.|+..|...
T Consensus 28 vCP~CG~~~~~~ 39 (108)
T PF09538_consen 28 VCPKCGTEFPPE 39 (108)
T ss_pred cCCCCCCccCcc
Confidence 477787777655
No 137
>PLN02400 cellulose synthase
Probab=26.88 E-value=52 Score=43.16 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=39.6
Q ss_pred CCCcccccCCCc--cCCCCceEEcCCCCccccCccccCccccCCCceeEecccc
Q 002201 635 TTERCAVCRWVE--DWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT 686 (954)
Q Consensus 635 ~~~~C~VC~~~e--~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~ 686 (954)
+...|.||++.- ..+.+..+-|..|.-.|-..||- -+..+ |.=.|..|++
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERke-Gnq~CPQCkT 86 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKD-GTQCCPQCKT 86 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh-eeccc-CCccCcccCC
Confidence 567999999853 34556789999999999999993 23334 8889999998
No 138
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.76 E-value=41 Score=38.90 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=30.1
Q ss_pred CcccccCCCccCCCCceEEcCCCCccccCccccCccccCCCceeEecccc
Q 002201 637 ERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT 686 (954)
Q Consensus 637 ~~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~ 686 (954)
+.|+||.+....+ ++|.. =-|.-.||..|...=... ..-+|..|+.
T Consensus 230 ~~CaIClEdY~~G-dklRi-LPC~H~FH~~CIDpWL~~--~r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKG-DKLRI-LPCSHKFHVNCIDPWLTQ--TRTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccC-CeeeE-ecCCCchhhccchhhHhh--cCccCCCCCC
Confidence 4899999865433 34443 579999999997322111 1225888876
No 139
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=26.46 E-value=45 Score=43.64 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=39.5
Q ss_pred CCCcccccCCCc--cCCCCceEEcCCCCccccCccccCccccCCCceeEecccc
Q 002201 635 TTERCAVCRWVE--DWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT 686 (954)
Q Consensus 635 ~~~~C~VC~~~e--~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~ 686 (954)
+...|.||++.- ..+.+..+-|..|.-.|-..|| .-+..+ |.=.|..|++
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~e-G~q~CPqCkt 67 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKD-GNQSCPQCKT 67 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhc-CCccCCccCC
Confidence 466899999853 3355678999999999999999 333344 8889999998
No 140
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=26.42 E-value=54 Score=39.64 Aligned_cols=86 Identities=10% Similarity=0.244 Sum_probs=47.0
Q ss_pred CceEEcCCCCccccCccccCccccCCCceeEecccc-CcCCCCcccCCCceee---ccccCcCCceEeCCCC-Ccccccc
Q 002201 651 NKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT-EGGALKPTDVDSLWVH---VTCAWFQPEVSFASDE-KMEPALG 725 (954)
Q Consensus 651 ~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~-~gGaLK~t~~~g~WvH---v~CAlw~Pev~f~~~~-~~~pv~g 725 (954)
..|++|..|...-...|.. .++..|||..|.. .-.+..+. .+..+. ..|......+.+.... ...+...
T Consensus 3 ~~L~fC~~C~~irc~~c~~----~Ei~~~yCp~CL~~~p~~e~~~--~~nrC~r~Cf~CP~C~~~L~~~~~~~~~~~~~~ 76 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVS----EEIDSYYCPNCLFEVPSSEARS--EKNRCSRNCFDCPICFSPLSVRASDTPPSPPDP 76 (483)
T ss_pred ccceecccccccCChhhcc----cccceeECccccccCChhhhee--ccceeccccccCCCCCCcceeEecccccccccc
Confidence 4789999999988888863 3457899999987 11111111 112221 2343333322222111 1122233
Q ss_pred cCCCCCCCCceeEeeec
Q 002201 726 ILCIPSNSFVKICVICK 742 (954)
Q Consensus 726 i~~i~~~~~~~~C~iC~ 742 (954)
........+-+.|.+|+
T Consensus 77 ~~~~~~~~~~l~C~~C~ 93 (483)
T PF05502_consen 77 SSDSGGKPYYLSCSYCR 93 (483)
T ss_pred cccCCCCCEEEECCCce
Confidence 34455566778999998
No 141
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=25.82 E-value=1.1e+02 Score=26.86 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=34.1
Q ss_pred CCCCCEEEEec---CCCCCcccEEEeCCCCCCChhhhccCCCCeEEEEEccccCCCCCC--cEEEeeCCceecCc
Q 002201 259 FYSGDIVWAKS---GKNYPYWPAIVIDPMTQAPDVVLRSCIPDAACVMFFGHCGDVNQR--DYAWVKRGLIFPFV 328 (954)
Q Consensus 259 f~~GDlVWAK~---g~~yPwWPa~V~dp~~~~p~~v~~~~~~~~~~V~FFG~s~~~~s~--dyaWv~~~~i~Pf~ 328 (954)
|..||.|=.+. |-+--|+||.|+... ..+.+.|.|-......... -.-||....|.|--
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~-----------~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~p 64 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKEN-----------GDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCP 64 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEE-----------TT-EEEEEETT-SS--------EEEEEGGGEEE--
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeC-----------CCcEEEEEECCcccccccccccEEEechheEECcC
Confidence 67788887776 223569999998654 1116999998766554333 48899999988864
No 142
>PRK05580 primosome assembly protein PriA; Validated
Probab=25.59 E-value=46 Score=41.85 Aligned_cols=53 Identities=23% Similarity=0.508 Sum_probs=0.0
Q ss_pred ccccccccccHHhhhcCCccccccccccCCCCCCeeeCCCCCceeeccccccccccccccCCCcccCCccccc
Q 002201 436 TGDQLFCRTCAKLMKSKHFCGICKKVWNHSDGGSWVRCDGCKVWVHAECDKISSSHFKDLGGSEYYCPACKAK 508 (954)
Q Consensus 436 ~~~~~lC~~C~~l~~kg~yCpiC~k~y~~~d~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~~~~~Y~Cp~Cr~k 508 (954)
+..+.+|..|..... ||.|+-...-+.....+.|+.|. ........||.|.+.
T Consensus 378 y~~~~~C~~Cg~~~~----C~~C~~~l~~h~~~~~l~Ch~Cg----------------~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 378 YAPFLLCRDCGWVAE----CPHCDASLTLHRFQRRLRCHHCG----------------YQEPIPKACPECGST 430 (679)
T ss_pred CCCceEhhhCcCccC----CCCCCCceeEECCCCeEECCCCc----------------CCCCCCCCCCCCcCC
No 143
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.57 E-value=53 Score=28.54 Aligned_cols=44 Identities=20% Similarity=0.514 Sum_probs=33.2
Q ss_pred cccccCCCCcccccCCCccC-CCCceEEcCCCCccccCccccCcc
Q 002201 629 PVYAKWTTERCAVCRWVEDW-DYNKIIICNRCQIAVHQECYGARN 672 (954)
Q Consensus 629 pv~~~~~~~~C~VC~~~e~~-~~~~Li~C~~C~~avH~~CyGv~~ 672 (954)
.|.+..++..|..|+..... ..+....|..|+..+|.+--+..+
T Consensus 21 ~v~~~~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA~N 65 (69)
T PF07282_consen 21 EVDEAYTSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAARN 65 (69)
T ss_pred EECCCCCccCccCcccccccccccceEEcCCCCCEECcHHHHHHH
Confidence 34444578899999987655 467899999999999887655443
No 144
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.56 E-value=36 Score=43.12 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.0
Q ss_pred cccccccccHHhhhcCCcccccccc
Q 002201 437 GDQLFCRTCAKLMKSKHFCGICKKV 461 (954)
Q Consensus 437 ~~~~lC~~C~~l~~kg~yCpiC~k~ 461 (954)
.+.+.|+.|+.+...-..||-|+.-
T Consensus 460 ~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 460 TGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 4789999999888888889999753
No 145
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.31 E-value=53 Score=43.60 Aligned_cols=42 Identities=17% Similarity=0.402 Sum_probs=29.0
Q ss_pred cccCCCCc------cCCCCCCCCCCCCccccccccccccccccccHHhhhcC----Ccccccccc
Q 002201 407 WAKNKDKR------PCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSK----HFCGICKKV 461 (954)
Q Consensus 407 ~~kck~c~------~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg----~yCpiC~k~ 461 (954)
+.+|..|- .|..||..+.- ...|..|....... ..||.|+.-
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~-------------vy~CPsCGaev~~des~a~~CP~CGtp 718 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP-------------VYVCPDCGAEVPPDESGRVECPRCDVE 718 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC-------------ceeCccCCCccCCCccccccCCCCCCc
Confidence 34588877 59999988621 23899998765433 279988753
No 146
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=24.09 E-value=38 Score=38.62 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=15.3
Q ss_pred eCCCCCCChhhhccCCCCeEEEEEcccc
Q 002201 281 IDPMTQAPDVVLRSCIPDAACVMFFGHC 308 (954)
Q Consensus 281 ~dp~~~~p~~v~~~~~~~~~~V~FFG~s 308 (954)
+||. ++-+.+.+..+.. +-|.+.|-|
T Consensus 177 ~DPg-di~~tI~~lk~~k-IRvsvIgLs 202 (378)
T KOG2807|consen 177 CDPG-DIYETIDKLKAYK-IRVSVIGLS 202 (378)
T ss_pred cCcc-cHHHHHHHHHhhC-eEEEEEeec
Confidence 5666 5556555554443 677777733
No 147
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=24.07 E-value=1.1e+02 Score=27.54 Aligned_cols=17 Identities=41% Similarity=0.434 Sum_probs=11.6
Q ss_pred HHHHHHHhhhhHhhhhh
Q 002201 353 EEAFLADQGFTEKLIQD 369 (954)
Q Consensus 353 eEA~~a~~g~~e~~~~~ 369 (954)
+||..|..||.|.+..+
T Consensus 32 ~eA~~~~~gyieDL~~E 48 (68)
T PF08846_consen 32 EEAEAALPGYIEDLESE 48 (68)
T ss_pred HHHHHHhccHHHHHHhh
Confidence 46777788887776543
No 148
>PLN02436 cellulose synthase A
Probab=23.64 E-value=52 Score=43.07 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=39.5
Q ss_pred CCCcccccCCCc--cCCCCceEEcCCCCccccCccccCccccCCCceeEecccc
Q 002201 635 TTERCAVCRWVE--DWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT 686 (954)
Q Consensus 635 ~~~~C~VC~~~e--~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~ 686 (954)
+...|.||++.- ..+.+..+-|..|+-.|-..||- .+..+ +.=.|..|++
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~e-g~~~Cpqckt 86 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERRE-GNQACPQCKT 86 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhc-CCccCcccCC
Confidence 456899999853 44556789999999999999993 23334 8889999987
No 149
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=23.50 E-value=47 Score=39.16 Aligned_cols=144 Identities=18% Similarity=0.284 Sum_probs=76.0
Q ss_pred cccccCCCccCCCCceEEcCCCCccccCccccCcc-----------ccCCCceeEecccc--------------------
Q 002201 638 RCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARN-----------VQDFTSWVFEIVYT-------------------- 686 (954)
Q Consensus 638 ~C~VC~~~e~~~~~~Li~C~~C~~avH~~CyGv~~-----------~p~~~~W~C~~C~~-------------------- 686 (954)
.|.-|...-. +.-.-|.-=+..||-.|.--.. ..+ +.-+|..|-.
T Consensus 276 iC~~C~K~V~---g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~-~k~~CE~cyq~tlekC~~Cg~~I~d~iLrA 351 (468)
T KOG1701|consen 276 ICAFCHKTVS---GQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVD-GKPYCEGCYQDTLEKCNKCGEPIMDRILRA 351 (468)
T ss_pred hhhhcCCccc---CcchHHHHhhhhhcccceehHhhhhhhccccccccC-CcccchHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 7888877543 3333444444556666652211 112 5567777765
Q ss_pred CcCCCCcccCCCceeeccccCcCCceEeCCCCCcccccccCCCCCCCCceeEeeeccC----CC--eeeecCCcCcccch
Q 002201 687 EGGALKPTDVDSLWVHVTCAWFQPEVSFASDEKMEPALGILCIPSNSFVKICVICKQI----HG--SCTQCCKCSTYYHA 760 (954)
Q Consensus 687 ~gGaLK~t~~~g~WvHv~CAlw~Pev~f~~~~~~~pv~gi~~i~~~~~~~~C~iC~~~----~G--a~IqC~~C~~aFHv 760 (954)
.|+++- .+-|..++|+.-+-.+.|.-...- -|..|.... ..|.-+|++|+.. .| ..|+=.-=.+.||+
T Consensus 352 ~GkayH----p~CF~Cv~C~r~ldgipFtvd~~n-~v~Cv~dfh-~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv 425 (468)
T KOG1701|consen 352 LGKAYH----PGCFTCVVCARCLDGIPFTVDSQN-NVYCVPDFH-KKFAPRCSVCGNPILPRDGKDETVRVVAMDRDFHV 425 (468)
T ss_pred cccccC----CCceEEEEeccccCCccccccCCC-ceeeehhhh-hhcCcchhhccCCccCCCCCcceEEEEEccccccc
Confidence 222222 245666777777777766543221 122333332 3456689999953 11 12222123578999
Q ss_pred hhhhhcCCeEEEEe-eccCCccccceEEeCCC
Q 002201 761 MCASRAGYRMELHC-LEKNGRQITKMVSYCAY 791 (954)
Q Consensus 761 ~CA~~aGl~me~~~-~~~~g~~~~~~~~yC~~ 791 (954)
.|-+-...-|.+.. .+..|=+...-.++|..
T Consensus 426 ~CY~CEDCg~~LS~e~e~qgCyPld~HllCk~ 457 (468)
T KOG1701|consen 426 NCYKCEDCGLLLSSEEEGQGCYPLDGHLLCKT 457 (468)
T ss_pred cceehhhcCccccccCCCCcceeccCceeech
Confidence 99877666666542 23333344555677754
No 150
>PLN02195 cellulose synthase A
Probab=23.23 E-value=56 Score=42.43 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=39.2
Q ss_pred CCCcccccCCCc--cCCCCceEEcCCCCccccCccccCccccCCCceeEecccc
Q 002201 635 TTERCAVCRWVE--DWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVFEIVYT 686 (954)
Q Consensus 635 ~~~~C~VC~~~e--~~~~~~Li~C~~C~~avH~~CyGv~~~p~~~~W~C~~C~~ 686 (954)
+...|.||++.- ..+.+..+-|..|+-.|-..||- -+..+ |.=.|..|++
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~e-g~q~CpqCkt 56 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKE-GRKVCLRCGG 56 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhc-CCccCCccCC
Confidence 456899999833 33456789999999999999993 33334 8889999998
No 151
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=22.91 E-value=42 Score=24.09 Aligned_cols=10 Identities=30% Similarity=0.860 Sum_probs=5.7
Q ss_pred ccCCCCCCCC
Q 002201 414 RPCDGCGMTL 423 (954)
Q Consensus 414 ~~C~~CG~~~ 423 (954)
+.|..||...
T Consensus 3 ~~Cp~Cg~~~ 12 (26)
T PF13248_consen 3 MFCPNCGAEI 12 (26)
T ss_pred CCCcccCCcC
Confidence 3466666644
No 152
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.45 E-value=56 Score=24.50 Aligned_cols=27 Identities=33% Similarity=0.708 Sum_probs=15.3
Q ss_pred CCccccccccccCCCCCCeeeCCCCCc
Q 002201 452 KHFCGICKKVWNHSDGGSWVRCDGCKV 478 (954)
Q Consensus 452 g~yCpiC~k~y~~~d~~~~VqCd~C~~ 478 (954)
-.||+.|+..-.....+-..+|..|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 467888887766666667778887764
No 153
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.06 E-value=77 Score=31.03 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=12.4
Q ss_pred CCCCccCCCCCCCCCC
Q 002201 410 NKDKRPCDGCGMTLPS 425 (954)
Q Consensus 410 ck~c~~C~~CG~~~~~ 425 (954)
|.-...|..||.++-.
T Consensus 12 C~LP~~CpiCgLtLVs 27 (112)
T TIGR00622 12 CELPVECPICGLTLIL 27 (112)
T ss_pred cCCCCcCCcCCCEEec
Confidence 6677889999988743
No 154
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.47 E-value=19 Score=45.91 Aligned_cols=52 Identities=31% Similarity=0.678 Sum_probs=37.5
Q ss_pred ccccccccccCCC-CCCeeeCCCCCceeecccccccccccccc-CCCcccCCcccccccc
Q 002201 454 FCGICKKVWNHSD-GGSWVRCDGCKVWVHAECDKISSSHFKDL-GGSEYYCPACKAKFNF 511 (954)
Q Consensus 454 yCpiC~k~y~~~d-~~~~VqCd~C~~WvH~~Cd~~~~~~~e~~-~~~~Y~Cp~Cr~k~~~ 511 (954)
=|+||-.+.+..| .-.--.|..|+.-+|+.|- |+=. ....-.||.||..+.+
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CL------yKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCL------YKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHH------HHHHHhcCCCCCCcccccccc
Confidence 4899988877433 2355689999999999995 2211 3456899999977654
No 155
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.39 E-value=84 Score=35.90 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=9.5
Q ss_pred CcccCCcccccccc
Q 002201 498 SEYYCPACKAKFNF 511 (954)
Q Consensus 498 ~~Y~Cp~Cr~k~~~ 511 (954)
..+.|..|+.-.+.
T Consensus 251 r~e~C~~C~~YlK~ 264 (309)
T PRK03564 251 KAESCGDCGTYLKI 264 (309)
T ss_pred Eeeeccccccccee
Confidence 34788888865533
No 156
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=21.31 E-value=56 Score=30.20 Aligned_cols=13 Identities=46% Similarity=0.675 Sum_probs=9.7
Q ss_pred CCCCCCCEEEEec
Q 002201 257 EDFYSGDIVWAKS 269 (954)
Q Consensus 257 ~~f~~GDlVWAK~ 269 (954)
+.|.+||||=||+
T Consensus 67 ~~FrpGDIVrA~V 79 (82)
T PF10447_consen 67 DCFRPGDIVRARV 79 (82)
T ss_dssp GT--SSSEEEEEE
T ss_pred hccCCCCEEEEEE
Confidence 4799999999996
No 157
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=20.91 E-value=44 Score=26.68 Aligned_cols=23 Identities=39% Similarity=0.966 Sum_probs=18.4
Q ss_pred ccccccccHHhhh-cCCccccccc
Q 002201 438 DQLFCRTCAKLMK-SKHFCGICKK 460 (954)
Q Consensus 438 ~~~lC~~C~~l~~-kg~yCpiC~k 460 (954)
..++|..|..... ....||+|++
T Consensus 21 gH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 21 GHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4679999988777 5667999975
No 158
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=20.91 E-value=54 Score=25.62 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=19.3
Q ss_pred CcccccCCCccCCCCceEEcCCCCcc
Q 002201 637 ERCAVCRWVEDWDYNKIIICNRCQIA 662 (954)
Q Consensus 637 ~~C~VC~~~e~~~~~~Li~C~~C~~a 662 (954)
..|.+|+..-...++...+|+.|+-.
T Consensus 9 ~~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CcCCCCCCeEeEccCCEEEhhhCceE
Confidence 45999988755566778888888753
No 159
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=20.45 E-value=74 Score=37.91 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=32.4
Q ss_pred cccccCCCccC-CCCceEEcCCCCccccCccccCccc-------------cCCCceeEecccc
Q 002201 638 RCAVCRWVEDW-DYNKIIICNRCQIAVHQECYGARNV-------------QDFTSWVFEIVYT 686 (954)
Q Consensus 638 ~C~VC~~~e~~-~~~~Li~C~~C~~avH~~CyGv~~~-------------p~~~~W~C~~C~~ 686 (954)
.|.||...+.. +.-..|.||-|+-..|.+|---... .+ ..++|..|-.
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d-~~f~C~~C~~ 191 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLD-MQFHCRACGK 191 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCc-eEEEccCCCC
Confidence 47888775433 2335889999999999999632210 12 5799999965
No 160
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=20.39 E-value=67 Score=26.30 Aligned_cols=33 Identities=30% Similarity=0.668 Sum_probs=21.2
Q ss_pred ccCCCCCC-CCCCCCccccccccccccccccccHHhh
Q 002201 414 RPCDGCGM-TLPSKSAKKIKASTTGDQLFCRTCAKLM 449 (954)
Q Consensus 414 ~~C~~CG~-~~~~~~~~k~~~~w~~~~~lC~~C~~l~ 449 (954)
+.|+.||. ...|.-.+. .-..+|-||..|+...
T Consensus 1 I~CDgCg~~PI~G~RykC---~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 1 IQCDGCGVLPITGPRYKS---KVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCCcccccceEe---CCCCCCccHHHHhhhh
Confidence 36999995 444533333 3346888999997554
No 161
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.35 E-value=69 Score=40.20 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=26.6
Q ss_pred ccCCCCCCCCCC--CCccccccccccccccccccHHhhh---------cCCccccccc
Q 002201 414 RPCDGCGMTLPS--KSAKKIKASTTGDQLFCRTCAKLMK---------SKHFCGICKK 460 (954)
Q Consensus 414 ~~C~~CG~~~~~--~~~~k~~~~w~~~~~lC~~C~~l~~---------kg~yCpiC~k 460 (954)
..|.+||-|..= ..+=-+.+....++.||..|-+.|+ +...||.|+=
T Consensus 124 ~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CGP 181 (750)
T COG0068 124 INCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCGP 181 (750)
T ss_pred cccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccCC
Confidence 368999966531 0011112223347888888876654 3446777765
No 162
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.28 E-value=84 Score=27.17 Aligned_cols=43 Identities=28% Similarity=0.621 Sum_probs=29.6
Q ss_pred cCCCCCCCCCCCCccccccccccccccccccHHhhhcCCccccccc
Q 002201 415 PCDGCGMTLPSKSAKKIKASTTGDQLFCRTCAKLMKSKHFCGICKK 460 (954)
Q Consensus 415 ~C~~CG~~~~~~~~~k~~~~w~~~~~lC~~C~~l~~kg~yCpiC~k 460 (954)
-|..|+..++..+..-.-. ..+.++|..|....- .+.||-|+-
T Consensus 7 nCE~C~~dLp~~s~~A~IC--SfECTFC~~C~e~~l-~~~CPNCgG 49 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYIC--SFECTFCADCAETML-NGVCPNCGG 49 (57)
T ss_pred CccccCCCCCCCCCcceEE--eEeCcccHHHHHHHh-cCcCcCCCC
Confidence 4888898888754222111 247899999987664 577999974
No 163
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=20.25 E-value=62 Score=24.88 Aligned_cols=27 Identities=33% Similarity=0.618 Sum_probs=16.4
Q ss_pred cccccccccCCC-----CCCeeeCCCCCceee
Q 002201 455 CGICKKVWNHSD-----GGSWVRCDGCKVWVH 481 (954)
Q Consensus 455 CpiC~k~y~~~d-----~~~~VqCd~C~~WvH 481 (954)
||-|+..|.-++ .+..|.|..|..-+.
T Consensus 5 CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 5 CPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred CCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 777777665442 234677777775443
Done!