Query 002204
Match_columns 954
No_of_seqs 245 out of 1123
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 18:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 1E-168 3E-173 1549.2 87.7 829 96-954 27-900 (900)
2 KOG1041 Translation initiation 100.0 2E-148 4E-153 1357.6 76.7 821 99-954 42-876 (876)
3 KOG1042 Germ-line stem cell di 100.0 4E-133 9E-138 1107.4 57.4 719 107-917 87-833 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 4E-102 9E-107 896.7 43.0 419 466-914 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 1.8E-95 4E-100 849.4 48.6 438 434-911 2-447 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 2.7E-88 5.9E-93 775.1 42.9 383 480-912 2-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 5.4E-73 1.2E-77 629.9 28.2 298 595-915 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 9.6E-47 2.1E-51 434.6 29.2 285 572-911 93-401 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 7.6E-23 1.7E-27 200.0 9.9 133 312-445 1-135 (135)
10 cd02825 PAZ PAZ domain, named 99.8 4.3E-20 9.3E-25 175.0 11.2 110 311-421 1-115 (115)
11 cd02846 PAZ_argonaute_like PAZ 99.8 5.3E-19 1.1E-23 167.7 12.4 110 312-421 2-114 (114)
12 cd02845 PAZ_piwi_like PAZ doma 99.8 2.5E-18 5.5E-23 162.4 9.5 106 312-422 2-115 (117)
13 PF08699 DUF1785: Domain of un 99.5 1.8E-14 3.8E-19 115.3 3.9 51 260-311 2-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.4 3.3E-13 7.2E-18 130.4 6.1 83 337-422 27-133 (135)
15 COG1431 Argonaute homolog, imp 99.2 1.6E-09 3.5E-14 122.4 20.9 297 538-912 355-668 (685)
16 cd02843 PAZ_dicer_like PAZ dom 98.6 9.6E-08 2.1E-12 89.3 7.3 67 338-406 38-106 (122)
17 PF13032 DUF3893: Domain of un 89.7 0.67 1.4E-05 45.4 5.8 57 856-916 66-122 (138)
18 PF08459 UvrC_HhH_N: UvrC Heli 87.6 3.6 7.8E-05 41.2 9.4 104 670-809 10-120 (155)
19 PRK11617 endonuclease V; Provi 82.5 37 0.0008 36.1 14.5 39 869-914 179-217 (224)
20 TIGR00194 uvrC excinuclease AB 77.8 15 0.00031 44.8 11.0 108 672-814 382-498 (574)
21 PRK14672 uvrC excinuclease ABC 71.1 34 0.00073 42.2 11.7 109 670-813 453-565 (691)
22 KOG1924 RhoA GTPase effector D 62.2 18 0.00039 44.2 6.8 10 245-254 734-743 (1102)
23 PRK14670 uvrC excinuclease ABC 61.4 74 0.0016 38.9 12.0 107 670-808 357-468 (574)
24 PRK12306 uvrC excinuclease ABC 60.4 71 0.0015 38.5 11.6 105 671-812 366-475 (519)
25 cd06559 Endonuclease_V Endonuc 57.6 57 0.0012 34.4 9.1 33 869-908 175-207 (208)
26 PRK14667 uvrC excinuclease ABC 55.7 87 0.0019 38.2 11.4 106 670-812 360-470 (567)
27 PRK00558 uvrC excinuclease ABC 54.5 1E+02 0.0022 38.0 11.9 98 670-804 382-485 (598)
28 PRK14671 uvrC excinuclease ABC 50.6 1.1E+02 0.0024 37.8 11.4 105 670-812 414-524 (621)
29 PRK14669 uvrC excinuclease ABC 48.8 1.4E+02 0.0031 36.8 11.8 107 670-812 395-506 (624)
30 PRK14666 uvrC excinuclease ABC 48.4 1.2E+02 0.0027 37.6 11.1 100 670-804 471-571 (694)
31 PF00763 THF_DHG_CYH: Tetrahyd 46.9 83 0.0018 29.9 7.6 69 578-648 15-85 (117)
32 PRK14166 bifunctional 5,10-met 36.7 1.5E+02 0.0032 32.8 8.6 71 575-647 13-85 (282)
33 PRK14193 bifunctional 5,10-met 35.4 1.6E+02 0.0035 32.6 8.6 71 575-648 15-88 (284)
34 PRK14194 bifunctional 5,10-met 35.4 1.6E+02 0.0035 32.9 8.6 70 575-647 16-88 (301)
35 PRK14187 bifunctional 5,10-met 35.1 1.7E+02 0.0038 32.5 8.8 71 575-647 14-87 (294)
36 PRK14169 bifunctional 5,10-met 33.3 1.9E+02 0.0041 32.0 8.7 71 575-647 13-85 (282)
37 PRK14185 bifunctional 5,10-met 32.8 1.7E+02 0.0037 32.5 8.3 56 590-647 29-86 (293)
38 PRK14183 bifunctional 5,10-met 32.7 1.9E+02 0.0042 31.9 8.6 70 575-647 13-86 (281)
39 PRK14192 bifunctional 5,10-met 32.6 1.9E+02 0.004 32.1 8.6 79 575-656 15-99 (283)
40 PRK14176 bifunctional 5,10-met 31.6 2.3E+02 0.0051 31.4 9.1 72 574-647 19-93 (287)
41 PRK14171 bifunctional 5,10-met 31.5 2.2E+02 0.0047 31.7 8.8 69 576-647 15-87 (288)
42 PRK14180 bifunctional 5,10-met 31.3 2.1E+02 0.0045 31.7 8.6 71 575-647 13-86 (282)
43 PRK14668 uvrC excinuclease ABC 30.6 3E+02 0.0065 33.8 10.6 98 671-806 375-479 (577)
44 PRK14170 bifunctional 5,10-met 30.5 2.1E+02 0.0045 31.7 8.4 71 575-647 14-86 (284)
45 PRK14190 bifunctional 5,10-met 30.3 2.2E+02 0.0047 31.6 8.5 71 575-648 15-88 (284)
46 PRK14182 bifunctional 5,10-met 30.1 2.1E+02 0.0047 31.6 8.4 70 575-647 13-85 (282)
47 PRK14167 bifunctional 5,10-met 30.0 2.2E+02 0.0049 31.7 8.6 69 576-647 15-86 (297)
48 PRK14188 bifunctional 5,10-met 28.9 2.4E+02 0.0053 31.4 8.7 71 575-648 14-88 (296)
49 PRK14175 bifunctional 5,10-met 28.8 2.3E+02 0.0049 31.5 8.4 71 575-647 15-87 (286)
50 PF09373 PMBR: Pseudomurein-bi 28.6 58 0.0013 23.6 2.5 23 738-761 11-33 (33)
51 PRK14189 bifunctional 5,10-met 28.4 2.6E+02 0.0057 31.0 8.8 70 575-647 15-87 (285)
52 PRK14184 bifunctional 5,10-met 28.1 2.6E+02 0.0056 31.1 8.6 61 591-654 30-95 (286)
53 PRK14174 bifunctional 5,10-met 27.8 2.5E+02 0.0054 31.3 8.5 54 591-647 30-86 (295)
54 PF02772 S-AdoMet_synt_M: S-ad 27.6 40 0.00087 32.2 2.0 30 885-914 12-41 (120)
55 PLN02516 methylenetetrahydrofo 27.1 2.8E+02 0.0062 30.9 8.8 55 590-647 37-94 (299)
56 PRK14172 bifunctional 5,10-met 26.4 2.8E+02 0.0062 30.6 8.6 71 574-647 13-87 (278)
57 KOG3915 Transcription regulato 25.9 1.8E+02 0.004 33.7 7.0 9 128-136 184-192 (641)
58 PRK10792 bifunctional 5,10-met 25.9 2.8E+02 0.006 30.8 8.4 71 575-648 15-89 (285)
59 PRK14168 bifunctional 5,10-met 25.6 2.8E+02 0.0061 31.0 8.4 70 575-647 15-88 (297)
60 PRK14186 bifunctional 5,10-met 25.6 2.9E+02 0.0063 30.8 8.5 61 591-654 31-96 (297)
61 PF12764 Gly-rich_Ago1: Glycin 25.4 2.5E+02 0.0053 26.0 6.4 9 27-35 22-30 (104)
62 PLN02897 tetrahydrofolate dehy 25.2 2.9E+02 0.0064 31.4 8.5 56 590-647 84-141 (345)
63 KOG2792 Putative cytochrome C 25.1 2.5E+02 0.0054 30.5 7.4 76 508-586 119-201 (280)
64 PLN00034 mitogen-activated pro 25.1 2.4E+02 0.0052 31.7 8.2 10 441-450 311-320 (353)
65 PRK14179 bifunctional 5,10-met 24.4 3.4E+02 0.0073 30.2 8.7 70 575-647 14-87 (284)
66 PLN02616 tetrahydrofolate dehy 23.7 3.3E+02 0.0071 31.2 8.6 55 591-647 102-158 (364)
67 PRK14177 bifunctional 5,10-met 23.6 3.6E+02 0.0078 29.9 8.7 78 575-654 15-97 (284)
68 PF05750 Rubella_Capsid: Rubel 22.8 3.1E+02 0.0067 27.7 7.2 10 31-40 60-69 (300)
69 COG0322 UvrC Nuclease subunit 21.9 5.4E+02 0.012 31.6 10.5 106 670-812 378-486 (581)
70 PRK14178 bifunctional 5,10-met 20.7 4.3E+02 0.0094 29.2 8.6 55 591-647 25-81 (279)
71 KOG4037 Photoreceptor synaptic 20.4 2E+02 0.0043 29.1 5.3 15 113-127 75-89 (240)
72 PRK14191 bifunctional 5,10-met 20.2 4.4E+02 0.0096 29.3 8.5 62 590-653 29-94 (285)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1.4e-168 Score=1549.16 Aligned_cols=829 Identities=37% Similarity=0.601 Sum_probs=706.2
Q ss_pred CCCcccCCCCCCCCCCCCeEEEEeeEEEEEc--CCcceEEEEEEecC----CCCchHHHHHHHHHHHHHhhhcccCCCce
Q 002204 96 SSQAVGFPVRPGFGTVGRKCVVRANHFMVQL--AERDIHHYDVSITP----WVTSRKINRQIISQLINLYRLTDLGERIP 169 (954)
Q Consensus 96 ~~~~~~~p~RP~~Gt~G~~i~v~tN~f~i~~--~~~~iy~YdV~i~P----~~~~k~~~r~i~~~l~~~~~~~~~~~~~~ 169 (954)
+++...++.|||||+.|++|.|+||||+|.+ ++..+|||||+|.| +++++++++.|++++++++... +.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCce
Confidence 4455578999999999999999999999997 47789999999996 4556778889999888776443 545568
Q ss_pred eeeCCceEEecCCCCCCCceEEEEcCCCCCC-----------CCCc--------ccCCCcEEEEEEEEeeecChHHHHHH
Q 002204 170 AYDGMKSIYTAGPLPFESKEFIINLPDSDPR-----------PSSS--------TRLRERQFRVVIRLASKPDLYTLQQF 230 (954)
Q Consensus 170 ~yDG~~~lys~~~Lp~~~~~~~v~l~~~~~~-----------~~~~--------~~~~~~~~~V~Ik~~~~i~l~~L~~~ 230 (954)
||||+++|||+.+|+.+..++.|++.++.++ +.+. ...+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 9999999999999998666888877642100 0000 00246789999999999999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCCCC-ccccccccccCCCCCCcccCCceEEEeceeeeeeeccceeEEeeecccccee
Q 002204 231 LRRRHFEAPYEVIQVLAVVLRAAPSEK-HTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFY 309 (954)
Q Consensus 231 l~g~~~~~~~~~iq~Lniilr~~~~~~-~~~~Gr~Ff~~~~~~~~~l~~gle~w~G~~~Svr~~~~~l~LniDvs~~~F~ 309 (954)
|.|.....+.++||+||+|||+.++.. ++.+||+||.+......+++.|+|+|+||++|||+++++|+||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999877778899999999999987654 8889999998654445678999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecC--C-------Cccc
Q 002204 310 EPILVTEFVQNYCRDLSHPLSDEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDD--S-------ATRM 380 (954)
Q Consensus 310 ~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~--~-------G~~i 380 (954)
++++|+|+|.++.+. +.....++.++.++|+|++|.++|+ ++.|+|.||++.++++.+|..+ + |++|
T Consensus 266 ~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~lkGl~V~t~~~--~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~i 341 (900)
T PLN03202 266 QPGPVVDFLIANQNV--RDPFQIDWSKAKRMLKNLRVKVSPS--NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEI 341 (900)
T ss_pred cCCcHHHHHHHhcCc--CCccchhHHHHHHHhcCCEEEEecC--CceEEEeeccCCCCcceEEEcccCCcccccCCcceE
Confidence 999999999887521 1111234567999999999999996 4679999999999999999321 1 3579
Q ss_pred cHHHHHHHHcCCccCCC-CCCeEecCCCCCcccccccceEeccCccccccCCHHHHHHHHHhhcCChHHHHHHHHHHHHh
Q 002204 381 SVIQYFRERYNIALQFT-SLPALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQRPREREENIRMMARA 459 (954)
Q Consensus 381 Sv~~Yf~~~Y~i~L~~p-~lP~v~~g~~~k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~ 459 (954)
||+|||+++||++|+|| ++|||.+|+..+++|||||||.|+|||+++++|++.|+++||++|+.+|.+|.+.|.++++.
T Consensus 342 Sv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~ 421 (900)
T PLN03202 342 TVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKS 421 (900)
T ss_pred EHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999996 99999999988899999999999999999999999999999999999999999999999998
Q ss_pred ccCCCchhhhhccCeEEcCcceEEeeEEeCCCceeeccCCcccccCCCCCccccccceeecCceeeeeEEEEeCCCCCHH
Q 002204 460 NAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRD 539 (954)
Q Consensus 460 ~~~~~~~~l~~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~~ 539 (954)
++++.++.|+ +|||+|+++|++|+||+||||+|.|+++. ...|++|+||+++++|+.++.+++|+||+|.++ .
T Consensus 422 ~~~~~~~~l~-~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~---~ 494 (900)
T PLN03202 422 SNYDADPMLR-SCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR---C 494 (900)
T ss_pred hCCCCchHHH-HCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc---h
Confidence 8888889998 99999999999999999999999998743 245789999999999999999999999988643 3
Q ss_pred HHHHHHHHHHHHHhhCCccccCCCeeeccC------CChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCC-CCh-hHHHH
Q 002204 540 VAFQFCQGLVDMCNSKGMVFNLRPVIPISS------SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-SGS-YGRIK 611 (954)
Q Consensus 540 ~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~-~~~-Y~~IK 611 (954)
+++.|++.|.+.|+.+||.+..+..+.... ...+.++..++.+.++. ...++|||||||++ +.+ |+.||
T Consensus 495 ~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~qlv~vIlp~~~~~~~Y~~IK 571 (900)
T PLN03202 495 DIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKL---PGPPQFLLCILPERKNSDIYGPWK 571 (900)
T ss_pred hHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhc---cCCCeEEEEEEcCCCCcchHHHHH
Confidence 688999999999999999997654321111 11233455555554433 24699999999975 556 99999
Q ss_pred HHhhhccCceeeeeecccccccchhhHHHHHHHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCe
Q 002204 612 RVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPS 691 (954)
Q Consensus 612 ~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pS 691 (954)
++||++.||+||||...+ .++||+.|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....||
T Consensus 572 ~~~~~~~gV~TQcv~~~~---~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pS 648 (900)
T PLN03202 572 KKNLSEFGIVTQCIAPTR---VNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPS 648 (900)
T ss_pred HHHhhccCcccEEeCccc---cchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCc
Confidence 999999999999996543 47899999999999999999998875444457887778999999999999987644799
Q ss_pred EEEEEeeeCCCcccceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHhc-CCCCceEEEEecCCChhh
Q 002204 692 IAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRST-NFKPHRIIFYRDGVGERQ 770 (954)
Q Consensus 692 iaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~-~~~P~~IIiyRDGVsEgq 770 (954)
|||+|||+||+.+++|++.++.|.+++|+|++|+....+. .+++|+.++|+.|++.+ +.+|++||||||||||||
T Consensus 649 iaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~----~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ 724 (900)
T PLN03202 649 IAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDK----DDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQ 724 (900)
T ss_pred eEEEEeccCcccccceeeEEEecCCCceeeeehhcccccc----chHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHH
Confidence 9999999998789999999999999999999875433322 25899999999999875 699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeec
Q 002204 771 FSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSH 850 (954)
Q Consensus 771 ~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh 850 (954)
|.+|+++|+++|++||++++++|+|+||||||+||||||||+.+ +.+||+||||||++||||..||||||||
T Consensus 725 ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~Sh 796 (900)
T PLN03202 725 FNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCAH 796 (900)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEecc
Confidence 99999999999999999998899999999999999999999863 3689999999999999999999999999
Q ss_pred CCcccccccceEEEEecCCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhhccccCCCCCCCCCCCc
Q 002204 851 AAIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIEDETSAGGSTDGNRST 930 (954)
Q Consensus 851 ~~~qGTarPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~~~~~d~~s~~~~~~~ 930 (954)
.++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||..+.++++++++++++
T Consensus 797 ~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~ 876 (900)
T PLN03202 797 AGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGIT 876 (900)
T ss_pred cccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998543322222222221
Q ss_pred ccccccCCCCccccccCCCCeeeC
Q 002204 931 AERNLAIRPLPVIKDNVKDVMFYC 954 (954)
Q Consensus 931 ~~~~~~~~~~~~v~~~~~~~M~y~ 954 (954)
.........+..||++++++||||
T Consensus 877 ~~~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 877 SAGAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred CCCccccccccccchhhcCCeeeC
Confidence 222222345788999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-148 Score=1357.64 Aligned_cols=821 Identities=39% Similarity=0.609 Sum_probs=700.0
Q ss_pred cccCCCCCCCCCCCCeEEEEeeEEEEEc--CCcc-eEEEEEEecCCCCchHHHH-HHHHHHHHHhhhcccCCCceeeeCC
Q 002204 99 AVGFPVRPGFGTVGRKCVVRANHFMVQL--AERD-IHHYDVSITPWVTSRKINR-QIISQLINLYRLTDLGERIPAYDGM 174 (954)
Q Consensus 99 ~~~~p~RP~~Gt~G~~i~v~tN~f~i~~--~~~~-iy~YdV~i~P~~~~k~~~r-~i~~~l~~~~~~~~~~~~~~~yDG~ 174 (954)
....+.||+.|+.|+++.|.+|||.+++ ++.. ++||+|++.++..++...+ .++..+........++...++|||+
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~ 121 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQ 121 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCC
Confidence 3456679999999999999999999876 5555 9999999999988777775 4555444443323355566779999
Q ss_pred ceEEecCCCCC--CCceEEEEcCCCCCCCCCcccCCCcEEEEEEEEeeecChHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 002204 175 KSIYTAGPLPF--ESKEFIINLPDSDPRPSSSTRLRERQFRVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQVLAVVLRA 252 (954)
Q Consensus 175 ~~lys~~~Lp~--~~~~~~v~l~~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~ 252 (954)
++|||...|+. ...+|.+.+..+ .. .|+++|+++..+.+..+..++.+.....+.+++|+|++++++
T Consensus 122 ~~lyt~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~ 190 (876)
T KOG1041|consen 122 KTLYTKLELPEGVVTLDFDVISPKE---------WK--KFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLRE 190 (876)
T ss_pred ceeEeccccccccceEEEEecCCCC---------Cc--ceEEEEEecccccccCccccccCccccCchhHHHHHHHHHHh
Confidence 99999777773 333455544332 11 199999999988888888888887777889999999999999
Q ss_pred CCCCC-ccccccccccCCCCCCcccCCceEEEeceeeeeeeccceeEEeeeccccceecCccHHHHHHHHhhccCCCCCH
Q 002204 253 APSEK-HTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEPILVTEFVQNYCRDLSHPLSD 331 (954)
Q Consensus 253 ~~~~~-~~~~Gr~Ff~~~~~~~~~l~~gle~w~G~~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~l~~ 331 (954)
.++.. +..+|++||.........+++|.|+|.||++|+|+++++++||+|+++++||++.+|++++++++.-..+.+..
T Consensus 191 ~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~~~ 270 (876)
T KOG1041|consen 191 IATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAFHK 270 (876)
T ss_pred hhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCccccccc
Confidence 98876 99999999986322344589999999999999999999999999999999999999999999998322233333
Q ss_pred HHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecCC--CccccHHHHHHHHcCCccCCCCCCeEecCCCCC
Q 002204 332 EVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDS--ATRMSVIQYFRERYNIALQFTSLPALVAGSEAR 409 (954)
Q Consensus 332 ~~~~~l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~--G~~iSv~~Yf~~~Y~i~L~~p~lP~v~~g~~~k 409 (954)
.....++++|+||+|.++|++..|.|+|.+++..++.+.+|..++ +.++||+|||+++||++|+||+||||++|..++
T Consensus 271 ~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~ 350 (876)
T KOG1041|consen 271 DRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKR 350 (876)
T ss_pred ccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCC
Confidence 223348999999999999965556799999999999999994333 688999999999999999999999999999999
Q ss_pred cccccccceEeccCccccc-cCCHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCCchhhhhccCeEEcCcceEEeeEEe
Q 002204 410 PIYLPMELSRIVAGQRYAK-RLNERQVIALLRATCQRPREREENIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARIL 488 (954)
Q Consensus 410 ~~ylP~Elc~i~~gQ~~~~-kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~~fGi~i~~~~~~v~arvL 488 (954)
..|||||+|.|++||++.+ +|++.|+++|++.+++.|++|.+.|.++++..++..|++|+ +|||.|.++|+.|+||+|
T Consensus 351 ~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~-~fGi~i~~~~~~v~grvL 429 (876)
T KOG1041|consen 351 ENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLK-EFGIIVVSEPTQVEGRVL 429 (876)
T ss_pred CcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHH-hcCeEEeccccccccccc
Confidence 9999999999999999998 99999999999999999999999999999999888899999 999999999999999999
Q ss_pred CCCceeeccCCcccccCCCCCccccccceeecCceeeeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCccccCCCeeecc
Q 002204 489 PAPMLKYHETGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPIS 568 (954)
Q Consensus 489 ~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~ 568 (954)
|||.|.|+++ .....|..|.|++++++|+.|+.+..|+|++|....+... +.|+++|++.|+..||.|.. +. ..
T Consensus 430 ~~P~L~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~ 503 (876)
T KOG1041|consen 430 PPPKLKFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KW 503 (876)
T ss_pred CCceeeccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--cc
Confidence 9999999985 3345678999999999999999999999999987655555 89999999999999999975 44 22
Q ss_pred CCChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh-hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 569 SSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 569 ~~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
......++..++.+...... ..++++++||++++..+ |+.||++++...||+||||+.+++.+..+||++||+||||+
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~-~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~ 582 (876)
T KOG1041|consen 504 APTEESLEDMITEKSSMEKA-AAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINV 582 (876)
T ss_pred CcccchhHHHHHHHHhhhcc-CCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhh
Confidence 22223444444433332211 35799999999999888 99999999999999999999999999999999999999999
Q ss_pred hcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCC--CCeEEEEEeeeCCCcccceEEEEEeccCchhhhhhhh
Q 002204 648 KVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDS--SPSIAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLY 725 (954)
Q Consensus 648 KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~--~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~ 725 (954)
||||+|+.|..+....+| ..+.+|||||+||+||+++... .|||||||+|+|| +.++|.+.+++|.+++|+|+++
T Consensus 583 KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~- 659 (876)
T KOG1041|consen 583 KLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL- 659 (876)
T ss_pred ccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch-
Confidence 999999988765333333 3468999999999999998754 5999999999997 9999999999999999999987
Q ss_pred hhcCCCCCccchhhHHHHHHHHHHHhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeee
Q 002204 726 KSIQDPQRGFVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 805 (954)
Q Consensus 726 ~~~~~~~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KR 805 (954)
.+|+.++|..|+++++.+|+||||||||||||||.+|+++|+.+||+||..+.++|.|+||||||+||
T Consensus 660 ------------~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKr 727 (876)
T KOG1041|consen 660 ------------GEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQKR 727 (876)
T ss_pred ------------HHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCcccccccceEEEEecCCCCChhHHHHHHHHhhh
Q 002204 806 CRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCY 885 (954)
Q Consensus 806 h~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~Lq~lTy~LC~ 885 (954)
||||||+.+.++ +..++.+|++||||||+.||||.+||||||||.++|||+||+|||||+||++|++|+||+|||.|||
T Consensus 728 HhtR~F~~~~~~-~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~ 806 (876)
T KOG1041|consen 728 HHTRLFAAELSK-DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCF 806 (876)
T ss_pred cceeeecccCCC-CccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhh
Confidence 999999998762 3456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccchhHHHHHHHHHHhhhhccccCCCCCCCCCCC-cccccccCCCCccccccCCCCeeeC
Q 002204 886 TYARCTRSVSVVPPAYYAYLAAFRARYYIEDETSAGGSTDGNRS-TAERNLAIRPLPVIKDNVKDVMFYC 954 (954)
Q Consensus 886 ~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~~~~~d~~s~~~~~~-~~~~~~~~~~~~~v~~~~~~~M~y~ 954 (954)
+|+|||++||||+|+||||++|+|||.+.+....+.....++.+ ..........+.++|.++..+||||
T Consensus 807 ~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 807 THQRCTKPVSLPAPLYYAHEVAKRGRNNYKEHLREKNSSAIYQSIVDLDALNSEEGYKEKAGLFGTRFNA 876 (876)
T ss_pred heeeecCCCcCCchHHHHHHHHHHhhhhhhhhccccCCCcccccccccchhhhhhHHHhhhcccceEEeC
Confidence 99999999999999999999999999983211112111111111 1111122345789999999999998
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.2e-133 Score=1107.36 Aligned_cols=719 Identities=25% Similarity=0.410 Sum_probs=632.9
Q ss_pred CCCCCCCeEEEEeeEEEEEc-CCcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhcccCCCceeeeCCceEEecCCCCC
Q 002204 107 GFGTVGRKCVVRANHFMVQL-AERDIHHYDVSITPWVTSRKINRQIISQLINLYRLTDLGERIPAYDGMKSIYTAGPLPF 185 (954)
Q Consensus 107 ~~Gt~G~~i~v~tN~f~i~~-~~~~iy~YdV~i~P~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~Lp~ 185 (954)
+.|+.|.+++|.||||++.. |++.||||+|+|+|.++++++++.++ ..|.+ .+|. -.+|||. +||.+++|..
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L----~~h~~-lig~-~~~FDG~-iLfl~~k~eq 159 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALL----YNHTD-LIGK-GYAFDGT-ILFLKEKFEQ 159 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHH----HHhHh-hhcc-ceeecce-eehhhHHHhh
Confidence 67999999999999999887 79999999999999999998876543 45543 3453 5699996 9999999865
Q ss_pred CCceEEEEcCCCCCCCCCcccCCCcEEEEEEEEeeecChHHHHHHHhhcCCCCchhHHHHHHHHHhcCC-CCCccccccc
Q 002204 186 ESKEFIINLPDSDPRPSSSTRLRERQFRVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQVLAVVLRAAP-SEKHTVVGRS 264 (954)
Q Consensus 186 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~-~~~~~~~Gr~ 264 (954)
+..+ +..+ ......++|+||+++++.. .+++.||++|+|||... .+++..+||+
T Consensus 160 ~~te----l~~k--------s~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRn 214 (845)
T KOG1042|consen 160 KQTE----LVSK--------SRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRN 214 (845)
T ss_pred hhhe----eecc--------cCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhc
Confidence 4222 1111 1566789999999987654 35789999999999854 6889999999
Q ss_pred cccCCCCCCcccC-CceEEEeceeeeeeeccceeEEeeeccccceecCccHHHHHHHHhhccCCCCCHHHHHHHHHHhcC
Q 002204 265 FFSTDLGPMGQLG-DGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEPILVTEFVQNYCRDLSHPLSDEVRLKVKKALKG 343 (954)
Q Consensus 265 Ff~~~~~~~~~l~-~gle~w~G~~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lkg 343 (954)
||++. .+.+|. ..+++|+||.+|||..+..++|+.|++|++ .+..|++|+|..+..+ ++...+++++.+-|
T Consensus 215 yynp~--~~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~~~~-----~~~~qe~~~~~~~g 286 (845)
T KOG1042|consen 215 YYDPR--AKIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSCQHN-----TQRFQETVNKNVIG 286 (845)
T ss_pred cCCCC--cccccccccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHHhhC-----HHHHHHHHHHHhcc
Confidence 99987 456675 689999999999999999999999999996 6999999999888742 34456789999999
Q ss_pred cEEEEeecCCcceEEEecccCCCCCCcEEecCCCccccHHHHHHHHcCCccCCCCCCeEecCCCC--------Ccccccc
Q 002204 344 IKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQYFRERYNIALQFTSLPALVAGSEA--------RPIYLPM 415 (954)
Q Consensus 344 l~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~~Y~i~L~~p~lP~v~~g~~~--------k~~ylP~ 415 (954)
+.|.+.| |+|+|+|+||+|+.++.++|..+|| +||+.|||+++|||+|++-+||+|+...++ ..+++.|
T Consensus 287 livLT~Y--NNktyriddvD~~~tP~stF~k~dg-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~lIP 363 (845)
T KOG1042|consen 287 LIVLTRY--NNKTYRIDDVDFSQTPLSTFKKDDG-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAMLIP 363 (845)
T ss_pred eEEEEec--CCceeeeeccccCcCccceeeecCc-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceeeeh
Confidence 9999999 7889999999999999999955555 899999999999999999999999986432 3479999
Q ss_pred cceEeccCccccccCCHHHHH------HHHHhhcCChHHHHHHHHHHHHhccCCCc--hhhhhccCeEEcCcceEEeeEE
Q 002204 416 ELSRIVAGQRYAKRLNERQVI------ALLRATCQRPREREENIRMMARANAYNED--TLVNKEFGIQVADDLTSVDARI 487 (954)
Q Consensus 416 Elc~i~~gQ~~~~kL~~~q~~------~mik~a~~~P~~R~~~I~~~~~~~~~~~~--~~l~~~fGi~i~~~~~~v~arv 487 (954)
|||+++ +|+++|++ +|.++++..|++|...+..+...+.-+.+ +.|+ .|||+++.+.++|.||+
T Consensus 364 ELc~~T-------GLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr-~Wgi~ld~~l~~v~gRi 435 (845)
T KOG1042|consen 364 ELCFLT-------GLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELR-DWGISLDSNLAEVQGRI 435 (845)
T ss_pred hhhhcc-------CCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHH-hcCcccCcchhhcccee
Confidence 999987 68998765 58889999999999999998876644332 4588 99999999999999999
Q ss_pred eCCCceeeccCCcccccCCCCCccc--cccceeecCceeeeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCccccCCCee
Q 002204 488 LPAPMLKYHETGREASVNPGFGQWN--MINKKMFNGGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVI 565 (954)
Q Consensus 488 L~~P~i~y~~~~~~~~~~p~~G~Wn--l~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~ 565 (954)
||+.+|.+++.. ....+..++|. .+..+++....+++|++++..+ +...++.|++.|.+.+..+||++..|.++
T Consensus 436 l~sEkI~~~~~~--~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r--~~~~a~~fi~~l~r~a~~mgm~i~~P~~v 511 (845)
T KOG1042|consen 436 LPSEKILFGNQK--VPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGR--NNSEAQEFINMLRRVASSMGMQIREPICV 511 (845)
T ss_pred cCccceecCCcc--cCCCcchhhhhhhcccccccccCCCcceEEEecCc--cHHHHHHHHHHHHHhccccceecCCceEE
Confidence 999999998742 22344567896 6778899999999999997654 66789999999999999999999988888
Q ss_pred eccCCChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh-hHHHHHHhhhccCceeeeeecccccccc--hhhHHHHH
Q 002204 566 PISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLN--MQYFENVA 642 (954)
Q Consensus 566 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~~--~q~~~Ni~ 642 (954)
.+.+++++.+.++|++... ..+|+|+||+|+.+++ |+.||+++|++..||||||+.+|+.+.. .+++.+|+
T Consensus 512 ~i~ddr~~tYvraiqq~v~------~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~ 585 (845)
T KOG1042|consen 512 EIKDDRPGTYVRAIQQVVG------ADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIA 585 (845)
T ss_pred EeCCCChHHHHHHHHHhcc------CCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHH
Confidence 8988889999888887664 5799999999999988 9999999999999999999999997654 46788999
Q ss_pred HHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccceEEEEEeccCchhhhh
Q 002204 643 LKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHHEEIIQ 722 (954)
Q Consensus 643 lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~ 722 (954)
|||||||||..|.++ ||+ +.+||||+||+|.+.. +..|++|+|||+| ..+++|++.+..|...+|+.+
T Consensus 586 lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d 653 (845)
T KOG1042|consen 586 LQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVGAFVASMN-NDFTRWFSRVIEQENGQELAD 653 (845)
T ss_pred HHHhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceEEEEEEeec-cchhhhhhheecccCHHHHHH
Confidence 999999999999885 787 6799999999998743 4689999999999 999999999999999999999
Q ss_pred hhhhhcCCCCCccchhhHHHHHHHHHHHhcCCCCceEEEEecCCChhhHHHHHHHHHH----HHHHHHHcccCCCCCCEE
Q 002204 723 DLYKSIQDPQRGFVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMN----AIRQACASLEEGYAPPVT 798 (954)
Q Consensus 723 ~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~----~I~~a~~~~~~~~~P~it 798 (954)
.| .-++..+|++|++.|..+|+|||+||||||+||+.++.+.|++ ++.+.++++..+++|+++
T Consensus 654 ~L-------------~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~ 720 (845)
T KOG1042|consen 654 NL-------------KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLA 720 (845)
T ss_pred HH-------------HHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEE
Confidence 99 9999999999999999999999999999999999999999999 777777888788999999
Q ss_pred EEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCcccccccceEEEEecCCCCChhHHHH
Q 002204 799 FVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENRFTADGLQV 878 (954)
Q Consensus 799 ~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~Lq~ 878 (954)
||||+||.++|||..... ...||+||||||+.||.|.++||||+||++.|||..||||+||+|++++++|.+|+
T Consensus 721 ~iVV~KrvntR~f~~~~~------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQr 794 (845)
T KOG1042|consen 721 VIVVTKRVNTRFFLQGSS------NAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQR 794 (845)
T ss_pred EEEEEeeccHHHHhhCCc------cccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHH
Confidence 999999999999997642 57899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccCCCccccchhHHHHHHHHHHhhhhccc
Q 002204 879 LTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIEDE 917 (954)
Q Consensus 879 lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~~~ 917 (954)
|||.|||+|+||.++|++||||+|||++|+....-++.+
T Consensus 795 LtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~e 833 (845)
T KOG1042|consen 795 LTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHRE 833 (845)
T ss_pred HHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999998877753
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=3.9e-102 Score=896.72 Aligned_cols=419 Identities=51% Similarity=0.860 Sum_probs=371.3
Q ss_pred hhhhhccCeEEcCcceEEeeEEeCCCceeeccCCcccccCCCCCccccccceeecCceeeeeEEEEeCCCCCH----HHH
Q 002204 466 TLVNKEFGIQVADDLTSVDARILPAPMLKYHETGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNR----DVA 541 (954)
Q Consensus 466 ~~l~~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~----~~~ 541 (954)
++|+ +|||+|+.+|++|+||+|+||.|.|+++. ....+.+|+||+++++|+.++.+++|+||++.++.+. +.+
T Consensus 1 ~~l~-~fGi~i~~~~~~v~grvL~~P~i~y~~~~--~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~ 77 (426)
T cd04657 1 PYLK-EFGISVSKEMITVPGRVLPPPKLKYGDSS--KTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADL 77 (426)
T ss_pred ChhH-hCCCEecCCeeEEeEEEcCCceeeccCCc--cccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHH
Confidence 3577 99999999999999999999999998643 2345779999999999999999999999998753222 479
Q ss_pred HHHHHHHHHHHhhCCccccCCCeeeccCCChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh-hHHHHHHhhhccCc
Q 002204 542 FQFCQGLVDMCNSKGMVFNLRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETELGI 620 (954)
Q Consensus 542 ~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~-Y~~IK~~~~~~~GI 620 (954)
+.|++.|.+.|+.+||.+. .... ...+..+..++.+.+.. ...++|||||+|+++.+ |+.||++||.+.||
T Consensus 78 ~~F~~~l~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~~~~---~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~gI 149 (426)
T cd04657 78 RNFVDQLVKTVIGAGINIT--TAIA---SVEGRVEELFAKLKQAK---GEGPQLVLVILPKKDSDIYGRIKRLADTELGI 149 (426)
T ss_pred HHHHHHHHHHHHhcCCccc--cccc---ccchhHHHHHHHHHhhc---cCCCCEEEEEEcCCCcchHHHHHHHHhhcCCc
Confidence 9999999999999999986 2211 12223333333322221 13699999999998866 99999999999999
Q ss_pred eeeeeecccccc-cchhhHHHHHHHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCC-CCCCeEEEEEee
Q 002204 621 VSQCCQPRQASR-LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGE-DSSPSIAAVVAS 698 (954)
Q Consensus 621 ~TQci~~~~~~k-~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~-~~~pSiaavVaS 698 (954)
+||||..+++.+ .+++++.||+||||+||||+||.++.. ..+++...+|||||+||+||++++ ...|||||+|||
T Consensus 150 ~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~---~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Vas 226 (426)
T cd04657 150 HTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPD---IRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVAS 226 (426)
T ss_pred ccEEEcccccccccchHHHHHHHHHHHHhcCCEeeecccc---cccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEEe
Confidence 999999999876 789999999999999999999999764 223445689999999999999875 457999999999
Q ss_pred eCCCcccceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHhcCCCCceEEEEecCCChhhHHHHHHHH
Q 002204 699 MDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHE 778 (954)
Q Consensus 699 ~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E 778 (954)
+| .++++|.+.+++|.+++|+|++| ++|++++|+.|++.||.+|++|||||||||||||.+|+++|
T Consensus 227 ~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E 292 (426)
T cd04657 227 VD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEE 292 (426)
T ss_pred cC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHH
Confidence 99 99999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCEEEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCcccccc
Q 002204 779 MNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSR 858 (954)
Q Consensus 779 ~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTar 858 (954)
+++|++||.++..+|+|+||||||+||||+|||+.+..+. ..+.+||+||||||++||+|..+||||+||.++|||||
T Consensus 293 ~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~--~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTar 370 (426)
T cd04657 293 LPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDA--DGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTAR 370 (426)
T ss_pred HHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccc--cccCCCCCCCeEEecccCCCCceeEEEeccccCccCCC
Confidence 9999999999988899999999999999999999876431 12379999999999999999999999999999999999
Q ss_pred cceEEEEecCCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhh
Q 002204 859 PTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYI 914 (954)
Q Consensus 859 PthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l 914 (954)
||||+||+||+++++|+||+|||+|||+|+||+++||||+|+||||++|+|||+||
T Consensus 371 Pt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 371 PTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999996
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.8e-95 Score=849.39 Aligned_cols=438 Identities=30% Similarity=0.456 Sum_probs=395.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHhccCCCc--hhhhhccCeEEcCcceEEeeEEeCCCceeeccCCcccccCCCCCcc
Q 002204 434 QVIALLRATCQRPREREENIRMMARANAYNED--TLVNKEFGIQVADDLTSVDARILPAPMLKYHETGREASVNPGFGQW 511 (954)
Q Consensus 434 q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~--~~l~~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~W 511 (954)
.+.+|+++++.+|.+|++.|.++++.+..+.+ +.|+ +|||+|++++++|+||+|+||.|.|+++.. ..+..|+|
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~-~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~---~~~~~~~w 77 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLK-KWGIELDSNPLKIQGRVLPPEQIIMGNVFV---YANSNADW 77 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHH-HCCeEEcCCceEEeeEEeCCCeEEeCCCcc---CCCCCCCc
Confidence 36789999999999999999999998877766 5788 999999999999999999999999987421 23457788
Q ss_pred cc--ccceeecCceeeeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCccccCCCeeeccCCChhhHHHHHHHHHHhhhcC
Q 002204 512 NM--INKKMFNGGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPISSSNPNQIEKALVDVHNRTTQQ 589 (954)
Q Consensus 512 nl--~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~ 589 (954)
+. .+.+|+.+..+++|++|++. .+.+.++.|++.|.+.++.+||.+..|.++.+...+.+++.+.|++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~W~vi~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~----- 150 (448)
T cd04658 78 KREIRNQPLYDAVNLNNWVLIYPS--RDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR----- 150 (448)
T ss_pred chhhcCCcccCCcccCeEEEEEec--CCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc-----
Confidence 64 46678999999999999875 4788999999999999999999998776666655555666666665553
Q ss_pred CCCceEEEEEeCCCCCh-hHHHHHHhhhccCceeeeeeccccccc--chhhHHHHHHHHHhhcCCcceeecccccccCCc
Q 002204 590 GKQLQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGRNTVLVDAVQKRIPL 666 (954)
Q Consensus 590 ~~~~~lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~--~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~ 666 (954)
.+++|+|||+|++..+ |..||++|+.+.||+||||..+++.+. ..+++.||++|||+||||+||.+... .
T Consensus 151 -~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~ 223 (448)
T cd04658 151 -SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------P 223 (448)
T ss_pred -CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------C
Confidence 4799999999998766 999999999999999999999998764 56899999999999999999998643 1
Q ss_pred cCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccceEEEEEeccCchhh-hhhhhhhcCCCCCccchhhHHHHHH
Q 002204 667 VTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHHEEI-IQDLYKSIQDPQRGFVHGGMIRELL 745 (954)
Q Consensus 667 ~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~-i~~l~~~~~~~~~~~~~~~~i~~~L 745 (954)
....+|||||+||+||+++ ..||++|+|||+| .++++|++.++.|..++|+ +++| ++|++++|
T Consensus 224 ~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~l 287 (448)
T cd04658 224 FILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKKAL 287 (448)
T ss_pred CCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHHHH
Confidence 2357899999999999863 4699999999999 9999999999999999998 8888 99999999
Q ss_pred HHHHHhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCcCCCCCCCCCCCCC
Q 002204 746 IAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRSG 825 (954)
Q Consensus 746 ~~f~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~~ 825 (954)
+.|++.+|.+|++|||||||||||||.+|+++|+++|++||..+..+|+|+||||+|+||||+|||+.+.. ..+
T Consensus 288 ~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~------~~~ 361 (448)
T cd04658 288 KAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGN------NFS 361 (448)
T ss_pred HHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCC------CCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999997642 458
Q ss_pred CCCceeEeeccccCCCcccEEEeecCCcccccccceEEEEecCCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHH
Q 002204 826 NILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYL 905 (954)
Q Consensus 826 N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~ 905 (954)
||+||||||++||+|..+||||+||.++||||||+||+||+||+++++|+||+|||+|||+|+|||++||+|+|+||||+
T Consensus 362 N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~ 441 (448)
T cd04658 362 NPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHK 441 (448)
T ss_pred CCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 002204 906 AAFRAR 911 (954)
Q Consensus 906 ~a~Rar 911 (954)
+|+|+.
T Consensus 442 ~a~~~g 447 (448)
T cd04658 442 LAFLVG 447 (448)
T ss_pred HHHHhc
Confidence 999875
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=2.7e-88 Score=775.09 Aligned_cols=383 Identities=31% Similarity=0.484 Sum_probs=338.9
Q ss_pred ceEEeeEEeCCCceeeccCCcccccCCCCCccccccceeecCcee-eeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcc
Q 002204 480 LTSVDARILPAPMLKYHETGREASVNPGFGQWNMINKKMFNGGRV-EVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMV 558 (954)
Q Consensus 480 ~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i-~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~ 558 (954)
+++|+||+||||.|.|+++ |++.+++|+.++.+ ++|+||++.+ +..++|++.|.+.++++||.
T Consensus 2 ~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGMK 65 (393)
T ss_pred ceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCCc
Confidence 6789999999999999741 99999999999999 9999998853 34568999999999999999
Q ss_pred ccC-CCeeeccCC--ChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh-hHHHHHHhhhccCceeeeeecccccc--
Q 002204 559 FNL-RPVIPISSS--NPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASR-- 632 (954)
Q Consensus 559 i~~-~p~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k-- 632 (954)
+.. ++...+... +.+++.+.|+++.+ .+++|||||+|+++.+ |+.||++++.+ ||+||||..+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~ 138 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVFKNAIK------AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMR 138 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHHHHHhh------cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhcccc
Confidence 987 443323222 34455555655443 4799999999998777 99999999988 99999999999876
Q ss_pred cchhhHHHHHHHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCC-CCCCCeEEEEEeeeCCCcccceEEEE
Q 002204 633 LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPG-EDSSPSIAAVVASMDWPEVAKYRGLV 711 (954)
Q Consensus 633 ~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~-~~~~pSiaavVaS~d~~~~~~y~~~~ 711 (954)
..++++.||++|||+||||+||.|+.. .+...+|||||+||+|++++ ....||++|+|+|+| .. +.+.+.+
T Consensus 139 ~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g~~~ 210 (393)
T cd02826 139 RLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLGGFL 210 (393)
T ss_pred ccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccceEE
Confidence 678999999999999999999999753 12347899999999999875 345799999999999 65 4444567
Q ss_pred EeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHhcCC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHccc
Q 002204 712 SAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRSTNF-KPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLE 790 (954)
Q Consensus 712 ~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~~-~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~ 790 (954)
+.|..++|++++| ++|++++|+.|+++++. +|++|||||||||||||.+|+++|+++|++||. +.
T Consensus 211 ~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~ 276 (393)
T cd02826 211 YVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IE 276 (393)
T ss_pred EEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hC
Confidence 8888889999998 99999999999999999 999999999999999999999999999999999 77
Q ss_pred CCCCCCEEEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCcccccccceEEEEecCCC
Q 002204 791 EGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENR 870 (954)
Q Consensus 791 ~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~ 870 (954)
.+|+|+||||+|+||||+|||+.+.++ ..+||+||||||++||+|..+||||+||.++|||+||+||+||+||++
T Consensus 277 ~~~~p~it~Ivv~Krh~~Rff~~~~~~-----~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~ 351 (393)
T cd02826 277 ESYRPKLVIIVVQKRHNTRFFPNEKNG-----GVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKN 351 (393)
T ss_pred CCCCCCEEEEEEeccccceeccCCCCC-----CCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCC
Confidence 789999999999999999999986532 348999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhh
Q 002204 871 FTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARY 912 (954)
Q Consensus 871 ~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~ 912 (954)
+++|+||+|||+|||+|+||+++||+|+|+||||++|+|||+
T Consensus 352 ~~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 352 WSLNELEILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred CCHHHHHHHHHHHhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999984
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=5.4e-73 Score=629.86 Aligned_cols=298 Identities=45% Similarity=0.729 Sum_probs=267.6
Q ss_pred EEEEEeCCCCCh-hHHHHHHhhhccCceeeeeeccccccc--chhhHHHHHHHHHhhcCCcceeecccccccCCccCCCC
Q 002204 595 LLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRP 671 (954)
Q Consensus 595 lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~--~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~ 671 (954)
+||||+|+++.+ |..||++++.+.||+||||..+++.+. ..+++.||++|||+||||.|+.+.+. ....++ .+
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~-~~~~~~---~~ 76 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDS-PPSIDL---KN 76 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSC-SSGSSE---SE
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeeccc-cccccc---Cc
Confidence 589999997777 999999999999999999999999877 46999999999999999996444321 111111 68
Q ss_pred eEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHh
Q 002204 672 TIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRS 751 (954)
Q Consensus 672 tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~ 751 (954)
+||||+||+|++++....||++|+|+|+| .+.++|.+.++.|..++|++++| +++++++|+.|++.
T Consensus 77 ~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~~ 142 (302)
T PF02171_consen 77 TMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKKN 142 (302)
T ss_dssp EEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHHH
Confidence 99999999999877556799999999999 99999999999999999999998 99999999999999
Q ss_pred cCC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCcCCCCCCCCCCCCCCCCce
Q 002204 752 TNF-KPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRSGNILPG 830 (954)
Q Consensus 752 ~~~-~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pG 830 (954)
++. +|++|||||||||||||.+|+++|+++|++||.++..+|.|+|+||+|+||||+|||+.+.. +...||+||
T Consensus 143 ~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~-----~~~~N~~~G 217 (302)
T PF02171_consen 143 NGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGR-----DGLQNPPPG 217 (302)
T ss_dssp TTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSE-----ETTTEECTT
T ss_pred cCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccc-----cccCCCCCC
Confidence 997 99999999999999999999999999999999999889999999999999999999998764 257899999
Q ss_pred eEeeccccCCCcccEEEeecCCcccccccceEEEEecCCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHH
Q 002204 831 TVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRA 910 (954)
Q Consensus 831 TVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Ra 910 (954)
||||+.||+|..+||||+||.++|||+||+||+|||||++++.|+||+|||+|||+|+||++++|+|+|+||||++|+|+
T Consensus 218 tvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~ 297 (302)
T PF02171_consen 218 TVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRG 297 (302)
T ss_dssp EEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHH
T ss_pred eeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc
Q 002204 911 RYYIE 915 (954)
Q Consensus 911 r~~l~ 915 (954)
+.+++
T Consensus 298 ~~~~~ 302 (302)
T PF02171_consen 298 RNNLK 302 (302)
T ss_dssp HHHC-
T ss_pred HhhcC
Confidence 99863
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=9.6e-47 Score=434.65 Aligned_cols=285 Identities=22% Similarity=0.228 Sum_probs=231.1
Q ss_pred hhhHHHHHHHHHHhhhcCCCCceEEEEEeCCCC------Ch-hHHHHHHhhhccCceeeeeeccccccc--chhhHHHHH
Q 002204 572 PNQIEKALVDVHNRTTQQGKQLQLLIIILPDVS------GS-YGRIKRVCETELGIVSQCCQPRQASRL--NMQYFENVA 642 (954)
Q Consensus 572 ~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~~------~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~--~~q~~~Ni~ 642 (954)
.+.+..+++...++. ..+++++||++|++. .+ |..||+++ .+.||+||||..+++.+. ..+++.||+
T Consensus 93 ~~~~~~a~~~~~~~~---~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nia 168 (404)
T cd04659 93 AEAIIEAVDLALSES---SQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLA 168 (404)
T ss_pred hHHHHHHHHHHHHhh---cCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHH
Confidence 345555666655543 247899999999875 45 99999987 689999999999999764 578999999
Q ss_pred HHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccceEEEEEeccCchhhh-
Q 002204 643 LKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHHEEII- 721 (954)
Q Consensus 643 lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i- 721 (954)
+|||+|+||+||.|... ...+|||||+||+|+..+....+++|++ .| .+... .+..+...++.+
T Consensus 169 l~i~aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~v---f~-~~g~g---~~~~~~~~~~~~~ 233 (404)
T cd04659 169 LALYAKLGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQV---FD-SDGLG---LILRGAPIEEPTE 233 (404)
T ss_pred HHHHHhcCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEE---Ec-CCCCE---EEEecCccCCccc
Confidence 99999999999998642 2367999999999997542222344433 34 33211 222223333332
Q ss_pred ----hhhhhhcCCCCCccchhhHHHHHHHHHHHhcCC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCC
Q 002204 722 ----QDLYKSIQDPQRGFVHGGMIRELLIAFRRSTNF-KPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPP 796 (954)
Q Consensus 722 ----~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~~-~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~ 796 (954)
+++ .++++++|+.|++.++. +|+||||||||+. .++|+++|++||.++. |+
T Consensus 234 ~~~~~~~-------------~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~ 289 (404)
T cd04659 234 DRSPADL-------------KDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IK 289 (404)
T ss_pred ccCHHHH-------------HHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ce
Confidence 345 89999999999999988 9999999999994 6899999999999873 99
Q ss_pred EEEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCc--------ccccccceEEEEecC
Q 002204 797 VTFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAI--------QGTSRPTRYHVLYDE 868 (954)
Q Consensus 797 it~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~--------qGTarPthY~Vl~de 868 (954)
++||+|+||||+|||+.+..+ ...||++|||||.+ .+||||++|.+. +||++|+| |++|+
T Consensus 290 i~~I~V~k~~~~R~f~~~~~~-----~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~ 357 (404)
T cd04659 290 VDLVEVIKSGPHRLFRFGTYP-----NGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHS 357 (404)
T ss_pred EEEEEEEecCCcceEEecCCC-----CCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEcc
Confidence 999999999999999975432 12899999999964 599999999886 99999999 88899
Q ss_pred CCCChhHHHHHHHHhhhcccccCC-CccccchhHHHHHHHHHHh
Q 002204 869 NRFTADGLQVLTNNLCYTYARCTR-SVSVVPPAYYAYLAAFRAR 911 (954)
Q Consensus 869 ~~~~~d~Lq~lTy~LC~~y~r~t~-sVsiPaP~yYA~~~a~Rar 911 (954)
.+++.|+|+++||.|||+|+|++. ++++|+|+||||++|+...
T Consensus 358 ~~~~~~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 358 GNTDLEQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLLK 401 (404)
T ss_pred CCCCHHHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHHh
Confidence 889999999999999999999988 9999999999999998764
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=7.6e-23 Score=199.98 Aligned_cols=133 Identities=36% Similarity=0.577 Sum_probs=108.7
Q ss_pred ccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecCCCccccHHHHHHHHcC
Q 002204 312 ILVTEFVQNYCRDLSHPLSDEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQYFRERYN 391 (954)
Q Consensus 312 ~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~~Y~ 391 (954)
++|+|++.++.+... ........++.+.|+|++|.++|+++.+.|+|.+|+++.+++.+|.+.+|+.+||+|||+++||
T Consensus 1 ~~vld~~~~~~~~~~-~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g~~itv~eYf~~~Y~ 79 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQ-RNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDGKEITVAEYFKEKYN 79 (135)
T ss_dssp HHHHHHHHHHCTCSS-HHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTSEEEEHHHHHHHTCT
T ss_pred CcHHHHHHHHHhhhc-ccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCCceEEhHHHHHhhhh
Confidence 478999998873211 1112234459999999999999986667799999999999999996556999999999999999
Q ss_pred CccCCCCCCeEecCCCCC--cccccccceEeccCccccccCCHHHHHHHHHhhcCC
Q 002204 392 IALQFTSLPALVAGSEAR--PIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQR 445 (954)
Q Consensus 392 i~L~~p~lP~v~~g~~~k--~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~ 445 (954)
++|+||+||||+++...+ .+|||||||.|+|+|++.+++.+.+++.|++.+|.+
T Consensus 80 i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 80 IRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp ---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred cccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 999999999999998777 999999999999999999999999999999999863
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.82 E-value=4.3e-20 Score=175.03 Aligned_cols=110 Identities=28% Similarity=0.411 Sum_probs=96.5
Q ss_pred CccHHHHHHHHhh--ccCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecCCCccccHHHHHHH
Q 002204 311 PILVTEFVQNYCR--DLSHPLSDEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQYFRE 388 (954)
Q Consensus 311 ~~~l~d~i~~~~~--~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~ 388 (954)
+++|+|+++++++ +..+++.+.++.++.++|+|++|.++|++.++.|+|.+|++.++++. |.+.+|+.+||+|||++
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~dYf~~ 79 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDGKEITFADYFKE 79 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCCCEEEHHHHHHH
Confidence 3689999999983 33456677788899999999999999976567799999999999888 75667889999999999
Q ss_pred HcCCccCCCCCCeEecCCC---CCcccccccceEec
Q 002204 389 RYNIALQFTSLPALVAGSE---ARPIYLPMELSRIV 421 (954)
Q Consensus 389 ~Y~i~L~~p~lP~v~~g~~---~k~~ylP~Elc~i~ 421 (954)
+||++|+||+||||++|.. .+.+|||||||.|+
T Consensus 80 kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 80 RYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred HcCCcccCCCCCEEEecCcccCCCceEEchheEEeC
Confidence 9999999999999999987 67899999999874
No 11
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.79 E-value=5.3e-19 Score=167.73 Aligned_cols=110 Identities=45% Similarity=0.697 Sum_probs=94.3
Q ss_pred ccHHHHHHHHhhcc-CCCCCHHHHHHHHHHhcCcEEEEeecCC-cceEEEecccCCCCCCcEEecCCC-ccccHHHHHHH
Q 002204 312 ILVTEFVQNYCRDL-SHPLSDEVRLKVKKALKGIKVVLTHREY-NNSHKITGISSQPMSQLMFTDDSA-TRMSVIQYFRE 388 (954)
Q Consensus 312 ~~l~d~i~~~~~~~-~~~l~~~~~~~l~~~Lkgl~V~~~~~~~-~r~~~I~~i~~~~a~~~~F~~~~G-~~iSv~~Yf~~ 388 (954)
++|+|++.++++.. ...+.+.++.++.++|+|++|.++|.++ .|.|+|.||++.++.+.+|.+++| +.+||+|||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~ 81 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKE 81 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHH
Confidence 68999999998421 1235567888999999999999999752 456999999999998999954454 58999999999
Q ss_pred HcCCccCCCCCCeEecCCCCCcccccccceEec
Q 002204 389 RYNIALQFTSLPALVAGSEARPIYLPMELSRIV 421 (954)
Q Consensus 389 ~Y~i~L~~p~lP~v~~g~~~k~~ylP~Elc~i~ 421 (954)
+||++|+||+||||++|++.+++|+|||+|.|+
T Consensus 82 ~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 82 KYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 999999999999999999888999999999984
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.75 E-value=2.5e-18 Score=162.43 Aligned_cols=106 Identities=24% Similarity=0.391 Sum_probs=89.9
Q ss_pred ccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecCCCccccHHHHHHHHcC
Q 002204 312 ILVTEFVQNYCRDLSHPLSDEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQYFRERYN 391 (954)
Q Consensus 312 ~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~~Y~ 391 (954)
.+++|++.++++... ....+.++.+.|+|+.|.+.| +++.|+|.+|+++.++.++|...+|..+||+|||+++||
T Consensus 2 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~V~t~y--n~k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~Yy~~kY~ 76 (117)
T cd02845 2 TTVLDRMHKLYRQET---DERFREECEKELIGSIVLTRY--NNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYN 76 (117)
T ss_pred eeHHHHHHHHHHhcc---cHHHHHHHHHHcCCCEEEEee--CCeEEEEeEecCCCCccccCcCCCCCeeeHHHHHHHHcC
Confidence 468899988874211 125678899999999999999 467899999999999999995555568899999999999
Q ss_pred CccCCCCCCeEecCCC--------CCcccccccceEecc
Q 002204 392 IALQFTSLPALVAGSE--------ARPIYLPMELSRIVA 422 (954)
Q Consensus 392 i~L~~p~lP~v~~g~~--------~k~~ylP~Elc~i~~ 422 (954)
+.|+||+||||+++.+ .+.+|||||||.+++
T Consensus 77 i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltg 115 (117)
T cd02845 77 IEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTG 115 (117)
T ss_pred CccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhcC
Confidence 9999999999999863 347999999999873
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.49 E-value=1.8e-14 Score=115.31 Aligned_cols=51 Identities=61% Similarity=1.066 Sum_probs=41.8
Q ss_pred ccccccccCCCCCCcccCCceEEEeceeeeeeeccceeEEeeeccccceecC
Q 002204 260 VVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEP 311 (954)
Q Consensus 260 ~~Gr~Ff~~~~~~~~~l~~gle~w~G~~~Svr~~~~~l~LniDvs~~~F~~~ 311 (954)
.+||+||+++.+ ..+|++|+|+|+|||+||||+.++|+||||+++++||++
T Consensus 2 ~vgrsFF~~~~~-~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGG-PVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCC-CccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 589999998743 378999999999999999999999999999999999975
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.39 E-value=3.3e-13 Score=130.40 Aligned_cols=83 Identities=25% Similarity=0.361 Sum_probs=69.0
Q ss_pred HHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecCCC-ccccHHHHHHHHcCCccCCCCCCeEecCC---------
Q 002204 337 VKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDSA-TRMSVIQYFRERYNIALQFTSLPALVAGS--------- 406 (954)
Q Consensus 337 l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~G-~~iSv~~Yf~~~Y~i~L~~p~lP~v~~g~--------- 406 (954)
..+.|+|+.|.++| +++.|+|.+|+ +.+++++|..++| ..+||+|||+++||++|+||+||||+++.
T Consensus 27 ~~~~l~g~~V~t~h--n~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL~ 103 (135)
T cd02844 27 CACDLKGSVVTAPH--NGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLLH 103 (135)
T ss_pred cHHHhcCCEEEEcC--CCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceecc
Confidence 46789999999999 46779999999 9999999943344 56899999999999999999999998751
Q ss_pred -----C------C---CcccccccceEecc
Q 002204 407 -----E------A---RPIYLPMELSRIVA 422 (954)
Q Consensus 407 -----~------~---k~~ylP~Elc~i~~ 422 (954)
+ . ..++||||||.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 104 NRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred cccccccccccccccceEEEeChHHhcccc
Confidence 0 1 14699999998763
No 15
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.6e-09 Score=122.39 Aligned_cols=297 Identities=17% Similarity=0.200 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHhhCC-ccccC-CCeeeccCCChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh-hHHHHHHh
Q 002204 538 RDVAFQFCQGLVDMCNSKG-MVFNL-RPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVC 614 (954)
Q Consensus 538 ~~~~~~f~~~L~~~~~~~G-~~i~~-~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~-Y~~IK~~~ 614 (954)
...+..+.+.|....+..+ +...- -+-+.+.+.++. ....|..+.+++ ....++..-+-++.. |+.+|+
T Consensus 355 ~~rlk~~~kkv~~~fkn~n~i~~k~eg~~l~~a~~r~~-~kddl~~iIkei-----d~ee~~k~e~ykdd~~YailKr-- 426 (685)
T COG1431 355 LTRLKSTIKKVVYGFKNSNGIDWKVEGLTLHVAGKRPK-MKDDLTKIIKEI-----DVEELKKQEMYKDDVKYAILKR-- 426 (685)
T ss_pred hhHHHHHHHHHHHHHHhccchhhhcccceeeecccchh-hhccchhhhhhh-----hhhhhccccccccchHHHHHHh--
Confidence 3467788888888888776 43311 122223222221 112333333332 111233333444445 999998
Q ss_pred hhccCceeeeeecccccccchhhHHHHHHHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCeEEE
Q 002204 615 ETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAA 694 (954)
Q Consensus 615 ~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pSiaa 694 (954)
.+.-|++|.+...+..+.-.-++.|++.|+-||-+|+++.+.+. .-| -+-|+|+||+.-.-+ ...+.|
T Consensus 427 -ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~---~gp-----vDaivGlDvsr~~~g---n~tV~g 494 (685)
T COG1431 427 -LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG---LGP-----VDAIVGLDVSRVSEG---NWTVEG 494 (685)
T ss_pred -hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc---CCC-----ccceeeeeeeEEeeC---CeEEee
Confidence 45679999999999887777899999999999999999987543 122 258999999987633 234444
Q ss_pred EEeeeCCC--cccceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHHH---hcC-CCCceEEEEecCCCh
Q 002204 695 VVASMDWP--EVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRR---STN-FKPHRIIFYRDGVGE 768 (954)
Q Consensus 695 vVaS~d~~--~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~---~~~-~~P~~IIiyRDGVsE 768 (954)
+..-.| . ...+|.-.... .. ++.+ +..-.|.. +.+ ..-.+|++.|||-
T Consensus 495 ct~~f~-seg~l~eyy~t~tp------a~----------------GErl-~~~g~yle~~~~~gfe~~n~iV~lRDG~-- 548 (685)
T COG1431 495 CTSCFV-SEGGLEEYYHTVTP------AL----------------GERL-ETSGRYLEKMNWRGFESRNLIVTLRDGK-- 548 (685)
T ss_pred eeEEEe-ccCceEEeeecccC------Cc----------------cchh-hhHHHHHHHHHhhhhhccCeeEEEecCc--
Confidence 333333 2 22233222111 11 1111 11111111 112 3446799999994
Q ss_pred hhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeecc------ccCCCc
Q 002204 769 RQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTE------ICHPTE 842 (954)
Q Consensus 769 gq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~------It~p~~ 842 (954)
+...|++++++.=..++ -.++++.+ ++.+-+||..+.. .+ |--+-.+ ++.|.
T Consensus 549 -----l~~~E~aavkeyg~elg----sn~ev~~i-~knNp~vf~~e~~-------i~----g~f~~~~~s~~h~~~~~y- 606 (685)
T COG1431 549 -----LVAGEIAAVKEYGGELG----SNPEVNRI-LKNNPWVFAIEGE-------IW----GAFVRLDGSTVHLCCSPY- 606 (685)
T ss_pred -----cchHHHHHHHHHhhhcC----CChhhhee-cccCCeEEEecce-------ee----eEEEecCCcccccccCCC-
Confidence 55678877776555542 33455554 4466669987542 11 3333322 22222
Q ss_pred ccEEEeecCCcccccccceEEEEecCCCCChhHHHHHHHHhhhcccccCCC--ccccchhHHHHHHHHHHhh
Q 002204 843 FDFYLNSHAAIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRS--VSVVPPAYYAYLAAFRARY 912 (954)
Q Consensus 843 ~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~s--VsiPaP~yYA~~~a~Rar~ 912 (954)
.....||-+|.. |-.-+-.+.-|-|- |.|.|+-|.+..... .+||||++|||++.+.++.
T Consensus 607 -------npv~~gT~~pi~--~r~~~g~l~~e~i~-lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~ 668 (685)
T COG1431 607 -------NPVRRGTPRPIA--LRRRDGKLDGELIG-LVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARY 668 (685)
T ss_pred -------CceecCCCcccc--cccccCccchhhHH-HHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhc
Confidence 235568888876 33334445556665 999999999888777 9999999999999988885
No 16
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.60 E-value=9.6e-08 Score=89.29 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=57.5
Q ss_pred HHHhcCcEEEEeecCCc--ceEEEecccCCCCCCcEEecCCCccccHHHHHHHHcCCccCCCCCCeEecCC
Q 002204 338 KKALKGIKVVLTHREYN--NSHKITGISSQPMSQLMFTDDSATRMSVIQYFRERYNIALQFTSLPALVAGS 406 (954)
Q Consensus 338 ~~~Lkgl~V~~~~~~~~--r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~~Y~i~L~~p~lP~v~~g~ 406 (954)
.+.+.|..|.+.|++.. ++|+|.+|.++.++.++| ..++ .+|++|||+++||+.|++++||+|.++.
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F-~~~~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKF-PGPE-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCC-CCCC-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 46689999999996321 679999999999999999 3333 6999999999999999999999999974
No 17
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=89.74 E-value=0.67 Score=45.44 Aligned_cols=57 Identities=18% Similarity=0.094 Sum_probs=47.4
Q ss_pred ccccceEEEEecCCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhhcc
Q 002204 856 TSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIED 916 (954)
Q Consensus 856 TarPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~~ 916 (954)
.....=.+|+.-...-++++|-.|||.||+++.-+...+.+|.|+++|.++ +.|+-.
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~----~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQA----KEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHH----HHHccc
Confidence 344555777776666789999999999999999999999999999999884 677654
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=87.63 E-value=3.6 Score=41.15 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=54.4
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCccc-ceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHH
Q 002204 670 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVA-KYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAF 748 (954)
Q Consensus 670 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~-~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 748 (954)
-|.-|-++|+||-.. .-.|+++|.-.| .... +.+=.+.+... +-.+|+ ++|.|.|..+
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------~~M~Evl~RR 68 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDDY--------------AAMREVLTRR 68 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHHH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCC--CCCcHH--------------HHHHHHHHHH
Confidence 457899999999853 457888888666 3322 22223333321 112454 5566777666
Q ss_pred HHh----cCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeee--cccc
Q 002204 749 RRS----TNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR--CRTR 809 (954)
Q Consensus 749 ~~~----~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KR--h~tR 809 (954)
++. ...+|+-||| || +.||+. +.+++++++ +.. +-+|-..|+ |.|+
T Consensus 69 ~~~~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~l--gl~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 69 FKRLKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKEL--GLN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp HCCCHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCT--T------EEEEESSSSE---
T ss_pred HhcccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHc--CCC--eEEEEEEeccccccc
Confidence 643 2369999999 88 567764 566778776 333 445555554 5555
No 19
>PRK11617 endonuclease V; Provisional
Probab=82.52 E-value=37 Score=36.13 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhh
Q 002204 869 NRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYI 914 (954)
Q Consensus 869 ~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l 914 (954)
.+++.|+--.++-.+|- --++|.|+..||.+|.+.+...
T Consensus 179 h~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 179 HRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 46889999999988873 3479999999999998877643
No 20
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=77.81 E-value=15 Score=44.85 Aligned_cols=108 Identities=25% Similarity=0.248 Sum_probs=63.8
Q ss_pred eEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc--eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHH
Q 002204 672 TIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK--YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFR 749 (954)
Q Consensus 672 tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~--y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~ 749 (954)
.-|-++|++|-.. .-.|+++|--.| ....+ |. .+.+.. .+-.+|+ .+|.|.|...+
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~i~~--~~~~dDy--------------a~m~Evl~RR~ 439 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFED-GKPLKASYR-RYNINS--ITGGDDY--------------AAMREVLRRRY 439 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeC-CccChhhCC-eeecCC--CCCCCHH--------------HHHHHHHHHHH
Confidence 6788999999863 357888888766 43322 22 122221 1112443 45566665554
Q ss_pred Hhc----C-CCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEee--ecccccCcCC
Q 002204 750 RST----N-FKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK--RCRTRLFPAE 814 (954)
Q Consensus 750 ~~~----~-~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~K--Rh~tRff~~~ 814 (954)
+.- . .+|+-||| || +.||+.. ..+++.+++ ....|.+|-..| ||.+++|..+
T Consensus 440 ~r~~~~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg--~~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 440 SSIQKKNNLPLPDLILI--DG-GKGQLNA--------ALEVLKSLG--VVNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--CCCCCcEEEEEecCCCceEEEeCC
Confidence 331 1 48999888 88 6788754 445666653 212356777777 7777887643
No 21
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=71.11 E-value=34 Score=42.19 Aligned_cols=109 Identities=25% Similarity=0.344 Sum_probs=66.0
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc-eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHH
Q 002204 670 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK-YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAF 748 (954)
Q Consensus 670 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 748 (954)
-|..|-++|++|-.. .-.|+++|.-.| ....+ .+=.+.+.... .-++|+ .+|.|.|...
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~-G~p~k~~YR~f~ik~~~-~~~DD~--------------asM~Evl~RR 512 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKN-GAPDTKNYRLFNLRAHD-TRIDDF--------------ASMREAIARR 512 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEEC-CccChhhCCeeeccCCC-CCCchH--------------HHHHHHHHHH
Confidence 468999999999863 357888888777 43322 11122222110 113454 5566777666
Q ss_pred HHhc---CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCcC
Q 002204 749 RRST---NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPA 813 (954)
Q Consensus 749 ~~~~---~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~ 813 (954)
++.. ..+|+-||| || +.||+. +.++++.+++ . .|.+|-..||.-.-|+|.
T Consensus 513 ~~r~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elg--l--~i~vigLaKr~e~i~~~~ 565 (691)
T PRK14672 513 YTHTPEGYTLPDLILV--DG-GIGHVS--------AAQHVLDALG--L--SIPLVGLAKRAEELFIPN 565 (691)
T ss_pred hhcccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEecccEEEeCC
Confidence 5542 258999988 87 567765 4556666663 2 467888889765544443
No 22
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=62.23 E-value=18 Score=44.24 Aligned_cols=10 Identities=10% Similarity=0.497 Sum_probs=5.5
Q ss_pred HHHHHHhcCC
Q 002204 245 VLAVVLRAAP 254 (954)
Q Consensus 245 ~Lniilr~~~ 254 (954)
+|.-++++++
T Consensus 734 ~iqnLik~lP 743 (1102)
T KOG1924|consen 734 MIQNLIKHLP 743 (1102)
T ss_pred HHHHHHHhCC
Confidence 4555556655
No 23
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=61.39 E-value=74 Score=38.85 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=62.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc-eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHH
Q 002204 670 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK-YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAF 748 (954)
Q Consensus 670 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 748 (954)
.|.-|-++|+||-.. .-.|+++|--.| ....+ .+=.+.+........+|+ .+|.|.|...
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~ik~~~~~~~DD~--------------a~M~Evl~RR 417 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKM-GKPFKDGYRVYKINSLLKGEIDDF--------------KAIKEVISRR 417 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeeccCCCCCCCCHH--------------HHHHHHHHHH
Confidence 356899999999863 347888888776 43322 111222221100002443 5556666555
Q ss_pred HHhc----CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeeccc
Q 002204 749 RRST----NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRT 808 (954)
Q Consensus 749 ~~~~----~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~t 808 (954)
++.- +.+|+-||| || +.||+. +..+++.++ +....|.+|-..|+.-+
T Consensus 418 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~~l--g~~~~i~v~gLaK~~e~ 468 (574)
T PRK14670 418 YSKLINEQLELPNLILI--DG-GKGQLN--------AAYSILKGL--KIENKVKVCALAKKEET 468 (574)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHc--CCCCCceEEEEecCCeE
Confidence 5431 258999988 88 677875 445666666 33223778888886533
No 24
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=60.42 E-value=71 Score=38.50 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=61.7
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc-eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHH
Q 002204 671 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK-YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFR 749 (954)
Q Consensus 671 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~ 749 (954)
|.-|-++|+||-.. .-.|+++|--.| ....+ .+=.+.+.. .+-.+|+ .+|.|.|...+
T Consensus 366 p~rIE~fDiSh~~G----~~~V~smVvf~~-G~p~k~~YR~f~Ik~--~~~~dDy--------------~~m~Evl~RR~ 424 (519)
T PRK12306 366 PNVIECFDISHLSG----TSTVGSMVQFRN-GKPDKKNYRRFKIKT--VEGIDDF--------------ASIAEVVRRRY 424 (519)
T ss_pred CCeEEEEECCccCC----CCceEEEEEEeC-CccChhhcCeeecCC--CCCCCHH--------------HHHHHHHHHHH
Confidence 45789999999753 357888888766 33321 111222321 1112443 45566665554
Q ss_pred Hhc----CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCc
Q 002204 750 RST----NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFP 812 (954)
Q Consensus 750 ~~~----~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~ 812 (954)
+.. +.+|+-||| || +-||+.. ..+++.++ +. .|.+|-..|+. .++|.
T Consensus 425 ~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~~l~el--g~--~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 425 SRLLEENSELPDLIVI--DG-GKGQLSS--------AFKELRKL--GL--KIPLISIAKRE-EEIYV 475 (519)
T ss_pred hhcccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHc--CC--CCcEEEEEcCc-eEEEe
Confidence 431 248998888 88 6778754 45666666 33 46788888876 44443
No 25
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=57.58 E-value=57 Score=34.39 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=27.5
Q ss_pred CCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHH
Q 002204 869 NRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAF 908 (954)
Q Consensus 869 ~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~ 908 (954)
.+++.|+--+++-.+| +.-++|.|+..||+++.
T Consensus 175 h~i~l~~A~~~v~~~~-------~~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 175 HRIDLETAVELVLKCC-------KGYRLPEPTRLADLLSR 207 (208)
T ss_pred CCcCHHHHHHHHHHHc-------cCCCCCcHHHHHHHHhc
Confidence 4678898889888876 44789999999999874
No 26
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=55.65 E-value=87 Score=38.20 Aligned_cols=106 Identities=23% Similarity=0.240 Sum_probs=63.3
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc-eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHH
Q 002204 670 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK-YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAF 748 (954)
Q Consensus 670 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 748 (954)
.|.-|-++|++|-.. .-.|+++|.-.| ....+ .+=.+.+... +-.+|+ .+|.|.|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWED-GSMNKKEYRRYKIKTV--DGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 356899999999753 357888888777 43322 1112223211 113454 5566666655
Q ss_pred HHhc----CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCc
Q 002204 749 RRST----NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFP 812 (954)
Q Consensus 749 ~~~~----~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~ 812 (954)
++.. +.+|+-||| || +.||+. +..+++.+++ . .|.+|-..|+. .++|.
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl~--------aa~~~l~~lg--~--~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQLS--------VGIEVRDRLG--L--NIKVFSLAKKE-EILYT 470 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEecC-cEEEc
Confidence 5442 248999988 88 667775 4456666663 2 36678788865 33443
No 27
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=54.51 E-value=1e+02 Score=37.96 Aligned_cols=98 Identities=24% Similarity=0.286 Sum_probs=58.1
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc--eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHH
Q 002204 670 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK--YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIA 747 (954)
Q Consensus 670 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~--y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~ 747 (954)
.|.-|-++|+||-.. .-.|+++|--.| ....+ |. .+.+... +-.+|+ .+|.|.|..
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~i~~~--~~~dDy--------------a~m~Evl~R 439 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFED-GGPDKSEYR-RYNIKGV--TGGDDY--------------AAMREVLTR 439 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEEC-CccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHH
Confidence 356899999999753 457888888666 33221 22 1222211 112443 556666655
Q ss_pred HHHh----cCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEee
Q 002204 748 FRRS----TNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK 804 (954)
Q Consensus 748 f~~~----~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~K 804 (954)
.++. .+.+|+-||| || +.||+.. ..+++.+++ . .|.+|-..|
T Consensus 440 R~~~~~~~~~~~PDLili--DG-GkgQl~~--------a~~~l~~lg--~--~i~v~glaK 485 (598)
T PRK00558 440 RYSRLLKEFGPLPDLILI--DG-GKGQLNA--------AKEVLEELG--L--DIPVVGLAK 485 (598)
T ss_pred HhhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHCC--C--CCcEEEEEe
Confidence 5543 2358999998 88 6788754 445666663 2 355666666
No 28
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=50.61 E-value=1.1e+02 Score=37.75 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=62.7
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc--eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHH
Q 002204 670 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK--YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIA 747 (954)
Q Consensus 670 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~--y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~ 747 (954)
.|.-|-++|++|-.. .-.|+++|--.| ....+ |. .+.+... +-.+|+ .+|.|.|..
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~ik~~--~~~dDy--------------~~m~Evl~R 471 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVD-GKPKKSDYR-KFKLRSF--EGSDDY--------------AAMREVVTR 471 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHH
Confidence 356889999999863 357888888766 43322 22 1222211 113454 555666665
Q ss_pred HHHhc----CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCc
Q 002204 748 FRRST----NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFP 812 (954)
Q Consensus 748 f~~~~----~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~ 812 (954)
.++.. +.+|+-||| || +.||+. +..+++.+++ . .|.+|-..||. .++|.
T Consensus 472 R~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~~lg--~--~i~viglaK~~-e~i~~ 524 (621)
T PRK14671 472 RYSGSLAEELPLPDLIVI--DG-GKGQVN--------SAWKVLQELG--L--SVPVIGLAKRL-EEIFT 524 (621)
T ss_pred HhhccccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEecc-cEEEe
Confidence 55431 258999998 88 677875 4456666663 2 46788888844 44544
No 29
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=48.81 E-value=1.4e+02 Score=36.84 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=61.8
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc-eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHH
Q 002204 670 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK-YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAF 748 (954)
Q Consensus 670 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 748 (954)
.|.-|-++|++|-.. .-.|+++|--.| ....+ .+=.+.+.. .+-.+|+ .+|.|.|...
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~Ik~--~~~~DDy--------------a~M~Evl~RR 453 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWED-GKMKKSDYRKFIIKT--VVGVDDF--------------ASMREVVTRR 453 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 356899999999753 357888887666 33322 111122211 1112444 4556666555
Q ss_pred HHh---cC-CCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCc
Q 002204 749 RRS---TN-FKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFP 812 (954)
Q Consensus 749 ~~~---~~-~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~ 812 (954)
++. .+ .+|+-||| || +.||+. +.++++.+++ .. .|.+|-..|+... +|.
T Consensus 454 ~~r~~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elg--l~-~i~vigLaK~~e~-i~~ 506 (624)
T PRK14669 454 YSRLQEEKQPMPGLVLI--DG-GLGQLH--------AAAEALEAIG--IT-DQPLASIAKREEI-IYV 506 (624)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--CC-CCcEEEEecCCeE-EEC
Confidence 543 12 48999988 88 677875 4456666663 22 2667778887644 443
No 30
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=48.44 E-value=1.2e+02 Score=37.59 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=58.7
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc-eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHH
Q 002204 670 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK-YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAF 748 (954)
Q Consensus 670 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 748 (954)
.|.-|-++|++|-+. .-.++++|--.| ....+ .+=.+.+-.. + .+|+ .+|.|.|...
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~-G~p~k~~YR~f~i~~~--~-~dD~--------------~~m~ev~~RR 528 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFED-GKPARDAYRTYAFEDG--E-GDDY--------------GTLAAWAGRR 528 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEEC-CccChhhCCeeeCCCC--C-CChH--------------HHHHHHHHHH
Confidence 456889999999863 356788887666 43322 1111222211 1 1444 4556666555
Q ss_pred HHhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEee
Q 002204 749 RRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK 804 (954)
Q Consensus 749 ~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~K 804 (954)
++....+|+-||| || +.||+.. ..+++.+++- .-.|.+|-..|
T Consensus 529 ~~~~~~~PDLili--DG-G~gQl~a--------a~~~l~e~g~--~~~~~v~~laK 571 (694)
T PRK14666 529 VESGPPWPDLLLV--DG-GRGQLAA--------VVRALEEAGM--GGLFAVASIAK 571 (694)
T ss_pred hcCCCCCCCEEEE--cC-CHHHHHH--------HHHHHHHcCC--CCCccEEEEec
Confidence 5443358998888 87 6778754 4566666532 21366777777
No 31
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=46.87 E-value=83 Score=29.85 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=40.4
Q ss_pred HHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHhh
Q 002204 578 ALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK 648 (954)
Q Consensus 578 ~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~K 648 (954)
.+++..+....++..|.|+++.+.+.... |...|...+.++||.+..+.... ....+-+.....++|.-
T Consensus 15 ~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 15 ELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 33333333333345688888888776655 99999888899999999887632 12344566677777743
No 32
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.75 E-value=1.5e+02 Score=32.81 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..++...++..|.|+++...++.++ |...|...+.+.||.+..+....- ....-+.+...++|.
T Consensus 13 i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 13 IKEELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNEN--TTQNELLALINTLNH 85 (282)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 33344444443333345688888877776655 999998889999999998866421 112235566777774
No 33
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.44 E-value=1.6e+02 Score=32.56 Aligned_cols=71 Identities=24% Similarity=0.225 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHhh
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINVK 648 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~K 648 (954)
+.+.+++..+....++..|.|+++..-++.++ |...|...+.+.||.+..+... ++ ...-+.+...++|.-
T Consensus 15 i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---t~~el~~~I~~lN~D 88 (284)
T PRK14193 15 IKADLAERVAALKEKGITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADA---TQEELNAVIDELNAD 88 (284)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCC
Confidence 33444443333332334688888877776655 9999998999999999887654 22 122345666777744
No 34
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.39 E-value=1.6e+02 Score=32.91 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..+++..++..|.|+++..-++.+. |...|...+.+.||.+-.+... .+ ...-+.+...++|.
T Consensus 16 i~~~lk~~i~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---t~~~l~~~I~~lN~ 88 (301)
T PRK14194 16 VLAQVREDVRTLKAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADT---SQARLLALIAELNA 88 (301)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcC
Confidence 33444444444333345688988888777665 9999998899999999877653 22 22334566667764
No 35
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.10 E-value=1.7e+02 Score=32.50 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..+.+..+ +..|.|+++..-++.++ |...|...+.+.||.+..+....- ....-+..+..++|.
T Consensus 14 i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~e~~l~~~I~~lN~ 87 (294)
T PRK14187 14 ITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPST--ISESSLIEKINELNN 87 (294)
T ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 334444444433322 34688888877776655 999998899999999988866421 122335567777774
No 36
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.33 E-value=1.9e+02 Score=32.04 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..+....++..|.|+++...++.++ |...|...+.+.||.+..+....- ....-+.+...++|.
T Consensus 13 i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 85 (282)
T PRK14169 13 ILADLKQTVAKLAQQDVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEA--TTQADLLAKVAELNH 85 (282)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 33344444443332345688888887776655 999999899999999988765421 112234567777775
No 37
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.83 E-value=1.7e+02 Score=32.54 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=39.5
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 590 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 590 ~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
+..|.|+++...++.++ |...|...+.+.||.+..+....- ....-+.++..++|.
T Consensus 29 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 86 (293)
T PRK14185 29 GKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESD--VTEEELLAKVRELNQ 86 (293)
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 35688888888776655 999998899999999988765321 112234466667774
No 38
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.72 E-value=1.9e+02 Score=31.94 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhc-CCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQ-QGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~-~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.|++..+.... ++..|.|.++...++.++ |.+.|...+.+.||.+..+... ++ ...-+.+...++|.
T Consensus 13 i~~~l~~~v~~l~~~~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~ 86 (281)
T PRK14183 13 IKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTI---SQKEILETIAMMNN 86 (281)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhC
Confidence 33444444443322 234688888888776655 9999998999999999887653 22 22235567777773
No 39
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.58 E-value=1.9e+02 Score=32.12 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHhh--
Q 002204 575 IEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINVK-- 648 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~K-- 648 (954)
+.+.+++..++...+ +..|.|.++..-++..+ |..+|...+.+.||.+..+... .+. ..-+..++.++|..
T Consensus 15 i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~---~~~l~~~i~~Ln~d~~ 91 (283)
T PRK14192 15 IEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETT---TEQLLAKIEELNANPD 91 (283)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCC---HHHHHHHHHHHhCCCC
Confidence 334444433333222 34688888888776665 9999999999999999888763 222 33366788888865
Q ss_pred cCCcceee
Q 002204 649 VGGRNTVL 656 (954)
Q Consensus 649 lGG~n~~l 656 (954)
+-|+|..+
T Consensus 92 v~Gi~Vql 99 (283)
T PRK14192 92 VHGILLQH 99 (283)
T ss_pred CCEEEEeC
Confidence 67877654
No 40
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.65 E-value=2.3e+02 Score=31.39 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 574 QIEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 574 ~~~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
.+.+.|++..+....+ +..|.|+++..-++..+ |...|...+.+.||.+-.+....- ....-+.+...++|.
T Consensus 19 ~i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~LN~ 93 (287)
T PRK14176 19 KIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPAD--TTQEELLELIDSLNK 93 (287)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 3344444444433322 34688888888776665 999999899999999987765321 123335567778874
No 41
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.49 E-value=2.2e+02 Score=31.67 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 576 EKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 576 ~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
.+.+++..+++..+ +..|.|+++..-+...+ |...|...+.+.||.+..+... ++ ...-+.+...++|.
T Consensus 15 ~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~LN~ 87 (288)
T PRK14171 15 LADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTI---HTNDLISKINELNL 87 (288)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcC
Confidence 33344433333322 35688888877776655 9999888889999999887653 22 22335566667763
No 42
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.33 E-value=2.1e+02 Score=31.74 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..+++..+ +..|.|+++...++.++ |...|...+.+.||.+..+....- ....-+.++..++|.
T Consensus 13 i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 86 (282)
T PRK14180 13 LKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEH--TTESELLELIDQLNN 86 (282)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 333444434333222 34688888877776655 999998889999999988765421 112334567778873
No 43
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=30.61 E-value=3e+02 Score=33.79 Aligned_cols=98 Identities=24% Similarity=0.279 Sum_probs=58.0
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc-eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHH
Q 002204 671 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK-YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFR 749 (954)
Q Consensus 671 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~ 749 (954)
|.-|-++|++|-.. .-.|+++|--.| ....+ .+=.+.+.. -.+|+ .+|.|.|...+
T Consensus 375 p~rIE~fDiSh~~G----~~~V~s~Vvf~~-G~~~k~~YR~f~i~~----~~dD~--------------~~m~Evl~RR~ 431 (577)
T PRK14668 375 PERIEGFDVSHAQG----RAVVGSNVCFVD-GSAETADYRRKKLTE----RNDDY--------------ANMRELVRWRA 431 (577)
T ss_pred CCEEEEEECCccCC----CCceEEEEEEEC-CccCHHHcCeecCCC----CCChH--------------HHHHHHHHHHH
Confidence 46889999999753 357888888766 43322 111222322 13454 44455554444
Q ss_pred Hhc------CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeec
Q 002204 750 RST------NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRC 806 (954)
Q Consensus 750 ~~~------~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh 806 (954)
+.- +.+|+-||| || +-||+. +..+++.+++ . .|.+|-..|+.
T Consensus 432 ~r~~~~~~~~~~PDLili--DG-G~gQl~--------aa~~~l~elg--~--~i~v~glaK~~ 479 (577)
T PRK14668 432 ERAVEGRDDRPDPDLLLI--DG-GDGQLG--------AARDALAETG--W--DVPAIALAKAE 479 (577)
T ss_pred HhhhccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEcCC
Confidence 331 258999988 87 567765 4456666663 2 46677777854
No 44
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.53 E-value=2.1e+02 Score=31.72 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..++++.++..|.|+++..-++..+ |...|...+.++||.+-.+....- ....-+.+...++|.
T Consensus 14 i~~~ik~~i~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 86 (284)
T PRK14170 14 IQEKVTREVAELVKEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPEN--VTEEKLLSVVEELNE 86 (284)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 33444444444333345688888877776655 999998889999999988765421 112224456677764
No 45
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.30 E-value=2.2e+02 Score=31.60 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHhh
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINVK 648 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~K 648 (954)
+.+.+++..++...++..|.|+++...++.++ |.+.|...+.+.||.+..+... ++ ...-+.....++|.-
T Consensus 15 i~~~l~~~v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D 88 (284)
T PRK14190 15 KREQLKEEVVKLKEQGIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADI---TEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCC
Confidence 33444444443332345688888877766655 9999988899999999887654 22 122355667777754
No 46
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.14 E-value=2.1e+02 Score=31.60 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..++...++..|.|+++..-++..+ |...|...+.+.||.+-.+... .+ ...-+.+...++|.
T Consensus 13 i~~~ik~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---t~~~l~~~I~~lN~ 85 (282)
T PRK14182 13 VKGEVATEVRALAARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATT---TQAELLALIARLNA 85 (282)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhC
Confidence 33344443443333345688888888776665 9999988899999999877653 22 22335566677764
No 47
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.98 E-value=2.2e+02 Score=31.70 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 576 EKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 576 ~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
.+.|++..++...++..|.|+++..-++..+ |...|...+.+.||.+-.+... ++ ...-+.+...++|.
T Consensus 15 ~~~l~~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~ 86 (297)
T PRK14167 15 RDDLTDAIETLEDAGVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDA---PAEELYDTIDELNA 86 (297)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhC
Confidence 3334433333332345688888877776655 9999988999999999877654 22 12335566777774
No 48
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.93 E-value=2.4e+02 Score=31.43 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHhh
Q 002204 575 IEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINVK 648 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~K 648 (954)
+.+.+++..++...+ +..|.|+++..-++..+ |...|...+.+.||.+-.+... .+. ..-+.+++.++|.-
T Consensus 14 i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~---~~el~~~i~~lN~d 88 (296)
T PRK14188 14 VRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTS---QAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCC---HHHHHHHHHHHhCC
Confidence 334444444433222 34688888888776665 9999988899999998777543 322 22345677777754
No 49
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.76 E-value=2.3e+02 Score=31.51 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..+....++..|.|+++..-++..+ |...|...+.+.||.+-.+....- ....-+.+...++|.
T Consensus 15 i~~~~~~~v~~l~~~g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 15 YRQGLQDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEET--ATEEEVLNELNRLNN 87 (286)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 33344443333332335688888877776655 999998899999999988765421 122334466677763
No 50
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=28.59 E-value=58 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHhcCCCCceEEE
Q 002204 738 GGMIRELLIAFRRSTNFKPHRIIF 761 (954)
Q Consensus 738 ~~~i~~~L~~f~~~~~~~P~~IIi 761 (954)
.+|. .++..|.+.||++|..|-|
T Consensus 11 ~d~a-~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 11 LDMA-SRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHH-HHHHHHHHHcCCCCCeeeC
Confidence 3444 5889999999999998743
No 51
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.36 E-value=2.6e+02 Score=30.96 Aligned_cols=70 Identities=19% Similarity=0.101 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.|++..++...++..|.|.++...++..+ |...|...+.+.||.+-.+... ++ ...-+..+..++|.
T Consensus 15 i~~~lk~~i~~l~~~g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~ 87 (285)
T PRK14189 15 LRAEAAQRAAALTARGHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADL---SEAELLARIDELNR 87 (285)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcC
Confidence 33444444443332335688888887776655 9999988899999998777653 22 22334566667764
No 52
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.13 E-value=2.6e+02 Score=31.06 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=42.2
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh--hcCCcce
Q 002204 591 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV--KVGGRNT 654 (954)
Q Consensus 591 ~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~--KlGG~n~ 654 (954)
..|.|+++..-++.++ |...|...+.+.||.+..+... .+ ...-+.+...++|. ..-|+-.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlv 95 (286)
T PRK14184 30 RAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADT---TQEELEDLIAELNARPDIDGILL 95 (286)
T ss_pred CCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCcCceEEE
Confidence 4688888877776655 9999988899999999887653 22 22335567778874 3345443
No 53
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.83 E-value=2.5e+02 Score=31.32 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=39.4
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 591 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 591 ~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
..|.|+++...++.++ |.+.|...+.+.||.+-.+... .+ ...-+.+...++|.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~ 86 (295)
T PRK14174 30 KVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADT---TEEHLLKKIEDLNN 86 (295)
T ss_pred CCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhC
Confidence 4688888888776665 9999998999999999877654 22 22334566777774
No 54
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=27.61 E-value=40 Score=32.22 Aligned_cols=30 Identities=20% Similarity=0.011 Sum_probs=22.5
Q ss_pred hcccccCCCccccchhHHHHHHHHHHhhhh
Q 002204 885 YTYARCTRSVSVVPPAYYAYLAAFRARYYI 914 (954)
Q Consensus 885 ~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l 914 (954)
|.|+-.-.+-=+|.|+++||++++|....-
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~R 41 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEVR 41 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHHH
Confidence 456655667779999999999999886543
No 55
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=27.11 E-value=2.8e+02 Score=30.94 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=38.9
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 590 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 590 ~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
+..|.|+++..-++..+ |...|...+.+.||.+-.+... .+. ..-+.....++|.
T Consensus 37 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s---~~el~~~I~~lN~ 94 (299)
T PLN02516 37 GKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENIS---EAELISKVHELNA 94 (299)
T ss_pred CCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCC---HHHHHHHHHHHhC
Confidence 34688888877776655 9999988899999998887653 332 2334566667764
No 56
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.43 E-value=2.8e+02 Score=30.61 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhhhcCC-CCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 574 QIEKALVDVHNRTTQQG-KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 574 ~~~~~L~~~~~~~~~~~-~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
.+.+.|++..++...++ ..|.|.++...++.++ |...|...+.+.||.+..+... .+. ..-+.+...++|.
T Consensus 13 ~i~~~lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~---~~el~~~I~~lN~ 87 (278)
T PRK14172 13 KIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESIS---EEDLINEIEELNK 87 (278)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCC---HHHHHHHHHHHhC
Confidence 33444444444433222 3478888887776665 9999988889999999877653 221 2234566677774
No 57
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=25.91 E-value=1.8e+02 Score=33.72 Aligned_cols=9 Identities=0% Similarity=0.349 Sum_probs=4.3
Q ss_pred CcceEEEEE
Q 002204 128 ERDIHHYDV 136 (954)
Q Consensus 128 ~~~iy~YdV 136 (954)
..++--|+|
T Consensus 184 G~kVAsF~i 192 (641)
T KOG3915|consen 184 GAKVASFTI 192 (641)
T ss_pred CceeeEEEe
Confidence 444444554
No 58
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.87 E-value=2.8e+02 Score=30.81 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHhh
Q 002204 575 IEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINVK 648 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~K 648 (954)
+.+.|++..++...+ +..|.|+++..-++..+ |...|...+.+.||.+..+... ++ ...-+.....++|.-
T Consensus 15 i~~~lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~d 89 (285)
T PRK10792 15 VRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETT---SEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCC
Confidence 334444444433222 24578888877766655 9999988899999998888664 22 223345666777754
No 59
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.62 E-value=2.8e+02 Score=30.97 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..++...+ +..|.|+++..-++..+ |...|...+.+.||.+-.+... ++ ...-+.....++|.
T Consensus 15 i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---t~~el~~~I~~lN~ 88 (297)
T PRK14168 15 ILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDI---TEEELLALIDKYNN 88 (297)
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhC
Confidence 333444433333322 34688888877776655 9999998999999998776542 22 22334456777764
No 60
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.60 E-value=2.9e+02 Score=30.85 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=42.4
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHhh--cCCcce
Q 002204 591 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINVK--VGGRNT 654 (954)
Q Consensus 591 ~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~K--lGG~n~ 654 (954)
..|.|+++...++..+ |...|...+.+.||.+-.+... .+ ...-+.++..++|.- .-|+-.
T Consensus 31 ~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIiv 96 (297)
T PRK14186 31 RPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADT---SQAEVEALIAQLNQDERVDGILL 96 (297)
T ss_pred CCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEE
Confidence 4678888877776655 9999988899999999887663 32 233355677788753 345543
No 61
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=25.45 E-value=2.5e+02 Score=25.97 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=4.7
Q ss_pred CCCCCCCCC
Q 002204 27 QRGTDRGSH 35 (954)
Q Consensus 27 ~~~~~~~~~ 35 (954)
++++|||++
T Consensus 22 ~yGggrgg~ 30 (104)
T PF12764_consen 22 GYGGGRGGG 30 (104)
T ss_pred CCCCCCCCC
Confidence 445555554
No 62
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.20 E-value=2.9e+02 Score=31.43 Aligned_cols=56 Identities=23% Similarity=0.170 Sum_probs=39.2
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 590 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 590 ~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
+..|.|+++.+-++.+. |...|...+.+.||.+..+....- ....-+..+..++|.
T Consensus 84 g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~--~te~ell~~I~~lN~ 141 (345)
T PLN02897 84 GKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPED--CTEGQILSALRKFNE 141 (345)
T ss_pred CCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 35688888888776665 999998899999999988765421 112224467777763
No 63
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=25.11 E-value=2.5e+02 Score=30.54 Aligned_cols=76 Identities=9% Similarity=0.172 Sum_probs=43.1
Q ss_pred CCccccc---cceeecCceeeeeEEEEeC----CCCCHHHHHHHHHHHHHHHhhCCccccCCCeeeccCCChhhHHHHHH
Q 002204 508 FGQWNMI---NKKMFNGGRVEVWTCVNFS----TRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPISSSNPNQIEKALV 580 (954)
Q Consensus 508 ~G~Wnl~---~~kf~~~~~i~~W~vv~~~----~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~L~ 580 (954)
.|.|+|. ++.+-+.-=+-+|.+++|. .++-.++++.+...+-..-...|+..- |-+|.++ ..++....+.
T Consensus 119 GGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~-PlFIsvD--PeRD~~~~~~ 195 (280)
T KOG2792|consen 119 GGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPV-PLFISVD--PERDSVEVVA 195 (280)
T ss_pred CCceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCcc-ceEEEeC--cccCCHHHHH
Confidence 4677753 2333333335689999984 335567777777777666667777654 2233332 2233344555
Q ss_pred HHHHhh
Q 002204 581 DVHNRT 586 (954)
Q Consensus 581 ~~~~~~ 586 (954)
+..+++
T Consensus 196 eY~~eF 201 (280)
T KOG2792|consen 196 EYVSEF 201 (280)
T ss_pred HHHHhc
Confidence 555554
No 64
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=25.07 E-value=2.4e+02 Score=31.72 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=6.1
Q ss_pred hhcCChHHHH
Q 002204 441 ATCQRPRERE 450 (954)
Q Consensus 441 ~a~~~P~~R~ 450 (954)
.-...|.+|.
T Consensus 311 ~l~~~P~~Rp 320 (353)
T PLN00034 311 CLQREPAKRW 320 (353)
T ss_pred HccCChhhCc
Confidence 3445777775
No 65
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.44 E-value=3.4e+02 Score=30.15 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecc-cccccchhhHHHHHHHHHh
Q 002204 575 IEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPR-QASRLNMQYFENVALKINV 647 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~-~~~k~~~q~~~Ni~lKiN~ 647 (954)
+.+.+++..++...+ +..|.|+++..-++..+ |...|...+.+.||.+-.+... ++ ...-+.++..++|.
T Consensus 14 i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~ 87 (284)
T PRK14179 14 MQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETI---SQEELLDLIERYNQ 87 (284)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhC
Confidence 334444444443322 34688888887776665 9999988888999998776553 22 23345567778874
No 66
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=23.73 E-value=3.3e+02 Score=31.25 Aligned_cols=55 Identities=22% Similarity=0.120 Sum_probs=38.2
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 591 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 591 ~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
..|.|+++..-++.++ |...|...+.+.||.+..+.... ....+-+.++..++|.
T Consensus 102 ~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe--~~te~ell~~I~~LN~ 158 (364)
T PLN02616 102 VVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPE--DSTEQEVLKFISGFNN 158 (364)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHcC
Confidence 4688888888776665 99999888999999987775421 1122234566667763
No 67
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.62 E-value=3.6e+02 Score=29.92 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhcC-CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh--hc
Q 002204 575 IEKALVDVHNRTTQQ-GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV--KV 649 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~-~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~--Kl 649 (954)
+.+.+++..++...+ +..|.|+++..-++.++ |...|...+.+.||.+..+....- ....-+.+...++|. ..
T Consensus 15 i~~~lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~s~~el~~~I~~lN~D~~V 92 (284)
T PRK14177 15 IRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQ--TTTEELLGVIDKLNLDPNV 92 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCCCC
Confidence 334444433433322 23588888877776655 999998888999999988865321 123345567778875 44
Q ss_pred CCcce
Q 002204 650 GGRNT 654 (954)
Q Consensus 650 GG~n~ 654 (954)
-|+-.
T Consensus 93 ~GIlv 97 (284)
T PRK14177 93 DGILL 97 (284)
T ss_pred CeEEE
Confidence 55543
No 68
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=22.84 E-value=3.1e+02 Score=27.74 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=6.5
Q ss_pred CCCCCCCCCC
Q 002204 31 DRGSHYGSGA 40 (954)
Q Consensus 31 ~~~~~~~~~~ 40 (954)
.|+||++|+.
T Consensus 60 rrrrgnrgrg 69 (300)
T PF05750_consen 60 RRRRGNRGRG 69 (300)
T ss_pred cccccccCcc
Confidence 6667776664
No 69
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=21.89 E-value=5.4e+02 Score=31.59 Aligned_cols=106 Identities=24% Similarity=0.291 Sum_probs=58.2
Q ss_pred CCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccc-eEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHH-HH
Q 002204 670 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAK-YRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELL-IA 747 (954)
Q Consensus 670 ~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~-y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L-~~ 747 (954)
.|.-|-++|++|-.. .-.|+++|-..| ....+ .+=.+.+. -+-.+|. .. |.|.| +.
T Consensus 378 ~p~rIE~~D~Sh~~g----~~~V~smvvf~~-g~~~k~~YRry~i~---~~~~dDy-------------a~-m~evl~RR 435 (581)
T COG0322 378 APYRIECFDISHIQG----EDTVGSMVVFED-GGPSKKDYRRYNIK---ITGGDDY-------------AS-MREVLTRR 435 (581)
T ss_pred CceeEEEeecCcccc----ccceeEEEEEcC-CCCChhhccccccc---CCCCchH-------------HH-HHHHHHHH
Confidence 356788999999863 345667776665 32221 11111111 0113343 33 34444 44
Q ss_pred HHHhcC-CCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCc
Q 002204 748 FRRSTN-FKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFP 812 (954)
Q Consensus 748 f~~~~~-~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~ 812 (954)
|.+.-. .+|+-|+| || +-||+.. .+++++++ +.... +|-+.|+-.+-|++
T Consensus 436 ~~~~~~~~~Pdli~i--DG-GkgQl~~--------a~~vl~~l--~~~~~--viglaK~~~~~~~~ 486 (581)
T COG0322 436 YSRLLKEELPDLILI--DG-GKGQLNA--------AKEVLKEL--GLDIP--VIGLAKGEEELLLP 486 (581)
T ss_pred hhhccccCCCCEEEE--eC-CHHHHHH--------HHHHHHHc--CCCcc--EEEEEecCceeEec
Confidence 544433 79987777 87 6778754 44566665 33222 77788877744444
No 70
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.73 E-value=4.3e+02 Score=29.23 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=39.0
Q ss_pred CCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 591 KQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 591 ~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
..|.|+++..-++.++ |...|...+.+.||.+..+....- ....-+.....++|.
T Consensus 25 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 81 (279)
T PRK14178 25 LYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGD--ATTRTVLERIRRLNE 81 (279)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 5688888877776665 999998889999999988765321 122334566777764
No 71
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=20.39 E-value=2e+02 Score=29.09 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=10.5
Q ss_pred CeEEEEeeEEEEEcC
Q 002204 113 RKCVVRANHFMVQLA 127 (954)
Q Consensus 113 ~~i~v~tN~f~i~~~ 127 (954)
--|.-.+|.|+|.+.
T Consensus 75 yLCSp~aNvy~IdFt 89 (240)
T KOG4037|consen 75 YLCSPEANVYKIDFT 89 (240)
T ss_pred ceeCcccceEEeeeE
Confidence 355667899988763
No 72
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.22 E-value=4.4e+02 Score=29.25 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=41.9
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHhh--cCCcc
Q 002204 590 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVK--VGGRN 653 (954)
Q Consensus 590 ~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~K--lGG~n 653 (954)
+..|.|+++..-++..+ |...|...+.+.||.+-.+....- ....-+.+...++|.- .-|+-
T Consensus 29 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIl 94 (285)
T PRK14191 29 GKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQEN--TTEAELLSLIKDLNTDQNIDGIL 94 (285)
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCCCCCEEE
Confidence 35688888877766655 999999899999999887765321 1223355677778743 34543
Done!