Query 002204
Match_columns 954
No_of_seqs 245 out of 1123
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:49:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 2E-178 6E-183 1639.2 79.7 833 90-954 15-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 8E-164 3E-168 1504.5 62.2 830 93-954 10-1046(1046)
3 2yhb_A QDE-2, post-transcripti 100.0 7E-102 2E-106 889.9 25.5 411 513-954 2-437 (437)
4 1yvu_A Hypothetical protein AQ 100.0 6.2E-99 2E-103 906.4 43.9 618 168-916 48-695 (706)
5 1u04_A Argonaute, hypothetical 100.0 2.2E-90 7.6E-95 830.5 41.2 658 114-916 3-758 (771)
6 3ho1_A Argonaute; argonaute, p 100.0 7.3E-82 2.5E-86 744.2 49.4 637 114-912 6-669 (685)
7 2yha_A Post-transcriptional ge 100.0 3.3E-84 1.1E-88 734.4 27.2 362 513-954 2-388 (388)
8 2w42_A PIWI, putative uncharac 100.0 8.8E-56 3E-60 508.1 16.1 364 487-915 5-406 (427)
9 4g0x_A Protein argonaute 1; MI 99.9 1.1E-27 3.8E-32 235.6 13.6 142 515-656 2-147 (147)
10 4g0o_A Protein argonaute 5; MI 99.9 9.9E-28 3.4E-32 233.6 11.2 138 515-656 2-139 (139)
11 1vyn_A Argonaute2; nucleic aci 99.9 1.4E-27 4.9E-32 233.3 8.6 134 309-444 2-142 (143)
12 3luc_A Protein argonaute-2; MI 99.9 5.6E-26 1.9E-30 221.0 14.0 134 515-653 2-138 (138)
13 4g0m_A Protein argonaute 2; MI 99.9 6.3E-26 2.1E-30 223.9 9.8 142 515-656 2-150 (150)
14 2xfm_A MIWI, PIWI-like protein 99.9 2.7E-24 9.4E-29 211.6 9.2 135 310-456 1-150 (150)
15 3mj0_A Protein argonaute-2; ar 99.9 4.5E-24 1.5E-28 202.4 7.3 116 310-428 1-124 (124)
16 3qir_A PIWI-like protein 2; st 99.9 4.8E-23 1.6E-27 200.9 8.7 132 310-454 1-148 (148)
17 3o7v_X PIWI-like protein 1; PI 99.8 1.9E-20 6.6E-25 176.8 10.1 114 312-437 2-124 (124)
18 1r6z_P Chimera of maltose-bind 99.8 5.4E-20 1.9E-24 217.9 7.6 128 302-431 375-509 (509)
19 2qvw_A GLP_546_48378_50642; di 98.5 3.6E-08 1.2E-12 119.7 4.3 84 336-422 151-253 (756)
20 2nrr_A Uvrabc system protein C 74.3 22 0.00077 34.2 10.8 96 671-805 17-114 (159)
21 2nrt_A Uvrabc system protein C 55.5 56 0.0019 33.3 10.0 96 671-805 22-119 (220)
22 3qbz_A DDK kinase regulatory s 40.8 8.3 0.00028 37.0 1.1 63 742-804 45-116 (160)
23 3c65_A Uvrabc system protein C 38.5 1.8E+02 0.006 29.7 10.7 98 671-805 14-118 (226)
24 2c2x_A Methylenetetrahydrofola 23.6 2E+02 0.0069 30.3 8.3 56 590-647 30-87 (281)
25 2w36_A Endonuclease V; hypoxan 22.8 1.9E+02 0.0065 29.4 7.6 39 868-912 184-222 (225)
26 3p2o_A Bifunctional protein fo 21.9 2.3E+02 0.008 29.9 8.4 78 577-656 18-99 (285)
27 4b4u_A Bifunctional protein fo 21.7 2E+02 0.0069 30.6 7.9 62 590-653 51-116 (303)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=1.7e-178 Score=1639.20 Aligned_cols=833 Identities=42% Similarity=0.706 Sum_probs=712.5
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCeEEEEeeEEEEEcCCcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhcccCCCce
Q 002204 90 ATPPPSSSQAVGFPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVSITPWVTSRKINRQIISQLINLYRLTDLGERIP 169 (954)
Q Consensus 90 ~~~~~~~~~~~~~p~RP~~Gt~G~~i~v~tN~f~i~~~~~~iy~YdV~i~P~~~~k~~~r~i~~~l~~~~~~~~~~~~~~ 169 (954)
++|+|++++.+.+|.|||+|+.|++|.|+||||+|+++++.+|||||+|.|+.++++++|++++++++.++...|++..+
T Consensus 15 ~~~~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~ 94 (861)
T 4f3t_A 15 APPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKP 94 (861)
T ss_dssp ----------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCC
T ss_pred CCCCccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceE
Confidence 34456777889999999999999999999999999998889999999999999899999999999998876566887778
Q ss_pred eeeCCceEEecCCCCCCCceEEEEcCCCCCCCCCcccCCCcEEEEEEEEeeecChHHHHHHHhhcCCCCchhHHHHHHHH
Q 002204 170 AYDGMKSIYTAGPLPFESKEFIINLPDSDPRPSSSTRLRERQFRVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQVLAVV 249 (954)
Q Consensus 170 ~yDG~~~lys~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lnii 249 (954)
||||+++|||+++||++...+++.+..+.+ .+++.|+|+|++++++++.+|.+||.|.....+.++||+||||
T Consensus 95 afDG~~~l~s~~~L~~~~~~~~~~v~~~~~-------~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lnii 167 (861)
T 4f3t_A 95 VFDGRKNLYTAMPLPIGRDKVELEVTLPGE-------GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVV 167 (861)
T ss_dssp EECSSSEEEESSCCSCSSCEEEEECCC--------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHH
T ss_pred EEcCcceEEECCcCCCCCcceEEEEecCCC-------CCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 999999999999999865443343321111 3467899999999999999999999999888889999999999
Q ss_pred HhcCCCCCccccccccccCCCCCCcccCCceEEEeceeeeeeeccceeEEeeeccccceecCccHHHHHHHHhhc-----
Q 002204 250 LRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEPILVTEFVQNYCRD----- 324 (954)
Q Consensus 250 lr~~~~~~~~~~Gr~Ff~~~~~~~~~l~~gle~w~G~~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~----- 324 (954)
||+.+++++..+||+||++..+...++++|+|+|+||++|||+++++|+||+|+++++|+++++|+|+|.++++.
T Consensus 168 lr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~ 247 (861)
T 4f3t_A 168 MRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEE 247 (861)
T ss_dssp HHHHHHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC-
T ss_pred HHhhccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhh
Confidence 999888889999999999875445678999999999999999999999999999999999999999999998831
Q ss_pred cCCCCCHHHHHHHHHHhcCcEEEEeecCC-cceEEEecccCCCCCCcEE-e-cCCCc--cccHHHHHHHHcCCccCCCCC
Q 002204 325 LSHPLSDEVRLKVKKALKGIKVVLTHREY-NNSHKITGISSQPMSQLMF-T-DDSAT--RMSVIQYFRERYNIALQFTSL 399 (954)
Q Consensus 325 ~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~-~r~~~I~~i~~~~a~~~~F-~-~~~G~--~iSv~~Yf~~~Y~i~L~~p~l 399 (954)
..+++++.++.+++++|+|++|.++|.++ +|+|+|.||++.++.+.+| . +++|+ +|||+|||+++||++|+||+|
T Consensus 248 ~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~l 327 (861)
T 4f3t_A 248 QQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHL 327 (861)
T ss_dssp --CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTS
T ss_pred hccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCC
Confidence 13457788899999999999999999754 4669999999988999999 2 35664 799999999999999999999
Q ss_pred CeEecCCCCCcccccccceEeccCccccccCCHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCCchhhhhccCeEEcCc
Q 002204 400 PALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQRPREREENIRMMARANAYNEDTLVNKEFGIQVADD 479 (954)
Q Consensus 400 P~v~~g~~~k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~~fGi~i~~~ 479 (954)
|||++|++++++|||||||.|+|||++.++|+++|+++||++++..|.+|.+.|.++++.++++.+++|+ +|||+|+++
T Consensus 328 Pll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~-~fGi~i~~~ 406 (861)
T 4f3t_A 328 PCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVR-EFGIMVKDE 406 (861)
T ss_dssp EEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHH-HTTCEECSS
T ss_pred ceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHH-HCCCEEeCC
Confidence 9999998888999999999999999999999999999999999999999999999999998888889998 999999999
Q ss_pred ceEEeeEEeCCCceeeccCCcccccCCCCCccccccceeecCceeeeeEEEEeCC--CCCHHHHHHHHHHHHHHHhhCCc
Q 002204 480 LTSVDARILPAPMLKYHETGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFST--RLNRDVAFQFCQGLVDMCNSKGM 557 (954)
Q Consensus 480 ~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~--~~~~~~~~~f~~~L~~~~~~~G~ 557 (954)
|++|+||+||||+|.|+++.+ ....|.+|+|++++++|+.++++++|+|++|.. ..+.+.++.|++.|.+.|+.+||
T Consensus 407 ~~~v~gRvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~ 485 (861)
T 4f3t_A 407 MTDVTGRVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGM 485 (861)
T ss_dssp CEEEEEEECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred eeEEEEEEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCc
Confidence 999999999999999986432 234678999999999999999999999999863 24678899999999999999999
Q ss_pred cccCCCeeeccCCChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCCCChhHHHHHHhhhccCceeeeeecccccccchhh
Q 002204 558 VFNLRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQY 637 (954)
Q Consensus 558 ~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~ 637 (954)
.+..+|.+.......+.++..++.+.+.. .+++|||||+|++...|+.||++||++.||+||||+.+++.|.++||
T Consensus 486 ~i~~~p~~~~~~~~~~~~~~~~~~l~~~~----~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~ 561 (861)
T 4f3t_A 486 PIQGQPCFCKYAQGADSVEPMFRHLKNTY----AGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT 561 (861)
T ss_dssp CBCSCCSEEEECCSSSSHHHHHHHHHHHS----TTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHH
T ss_pred ccCCCCeEEEecCchHHHHHHHHHHHhhc----CCCcEEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHH
Confidence 99765543222223345666666655432 47899999999764449999999999999999999999998889999
Q ss_pred HHHHHHHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccceEEEEEeccCc
Q 002204 638 FENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHH 717 (954)
Q Consensus 638 ~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~ 717 (954)
+.||+||||+||||+||.+.+. ..|.+...+|||||+||+||+++....|||||||||+| .++++|.+.+++|.++
T Consensus 562 ~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~ 637 (861)
T 4f3t_A 562 LSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHR 637 (861)
T ss_dssp HHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTT
T ss_pred HHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCC
Confidence 9999999999999999998653 23444568999999999999988667899999999999 7899999999999999
Q ss_pred hhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCE
Q 002204 718 EEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPV 797 (954)
Q Consensus 718 ~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~i 797 (954)
+|+|++| ++|+.++|+.|++.++.+|++|||||||||||||.+|+++|+++|++||.+++.+|+|+|
T Consensus 638 ~E~i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~i 704 (861)
T 4f3t_A 638 QEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGI 704 (861)
T ss_dssp CCSCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred ccHHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcE
Confidence 9999999 999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCcccccccceEEEEecCCCCChhHHH
Q 002204 798 TFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDENRFTADGLQ 877 (954)
Q Consensus 798 t~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~Lq 877 (954)
|||||+||||||||+.+.++ ..++.+|++||||||++||||.+||||||||+++|||||||||+||+||+++++|+||
T Consensus 705 t~Ivv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq 782 (861)
T 4f3t_A 705 TFIVVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQ 782 (861)
T ss_dssp EEEEEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHH
T ss_pred EEEEEEccccceeeecCCcc--cccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHH
Confidence 99999999999999987532 2467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhhcccc--CCCCCCCCCCCcccccccCCCCccccccCCCCeeeC
Q 002204 878 VLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIEDET--SAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 954 (954)
Q Consensus 878 ~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~~~~--~d~~s~~~~~~~~~~~~~~~~~~~v~~~~~~~M~y~ 954 (954)
+|||+|||+|+|||++|||||||||||++|+|||+|+.+.. ++++|++|+.+.............||++++++||||
T Consensus 783 ~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 783 ILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp HHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------CCSTTHHHHTCCCHHHHTTTTTC
T ss_pred HHHHHHhhhhhccCCCCCCchHHHHHHHHHHHHHHhhccccccCCccccccCCCcccchhhhhhhhhhhhhhccCceeC
Confidence 99999999999999999999999999999999999998643 233333332221111111122357999999999997
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=7.6e-164 Score=1504.46 Aligned_cols=830 Identities=24% Similarity=0.383 Sum_probs=657.1
Q ss_pred CCCCCCcccCCCCCCCCCCCCeEEEEeeEEEEEcCCc---------------------ceEEEEEEecCCCCc-------
Q 002204 93 PPSSSQAVGFPVRPGFGTVGRKCVVRANHFMVQLAER---------------------DIHHYDVSITPWVTS------- 144 (954)
Q Consensus 93 ~~~~~~~~~~p~RP~~Gt~G~~i~v~tN~f~i~~~~~---------------------~iy~YdV~i~P~~~~------- 144 (954)
.|.+...+.+|.||+|||.|++|.|+||||.|.+.+. .||+|+|+|.|+...
T Consensus 10 ~~~~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~ 89 (1046)
T 4f1n_A 10 KEDTHAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKP 89 (1046)
T ss_dssp --CCCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC------------
T ss_pred CCCccccccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEccccccccccccc
Confidence 3456778899999999999999999999999999644 899999999986432
Q ss_pred -------hHHHHHHHHHHHHH--hhhcccCCCceeeeCCceEEecCCCC---CCCceEEEEcC-----CCCCCCC-----
Q 002204 145 -------RKINRQIISQLINL--YRLTDLGERIPAYDGMKSIYTAGPLP---FESKEFIINLP-----DSDPRPS----- 202 (954)
Q Consensus 145 -------k~~~r~i~~~l~~~--~~~~~~~~~~~~yDG~~~lys~~~Lp---~~~~~~~v~l~-----~~~~~~~----- 202 (954)
++.+++|+..|+++ +.. .++. .+||||+++|||..+|| .....+.|.+. ++.++++
T Consensus 90 ~~~~~~~~~k~~~ii~~ll~e~~~~~-~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 167 (1046)
T 4f1n_A 90 VPPQELSKPKKYELIEALLDEDEILY-KYRD-RIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKAS 167 (1046)
T ss_dssp -----CCHHHHHHHHHHHHHSCTTTG-GGTT-SEEECSSSEEEESSCGGGSTTCTTCCC---------------------
T ss_pred CcccccchhHHHHHHHHHHHhcchhh-hcCC-ceeecCccceEECCcCCccccCCCceEEeccccccccCCccccccccc
Confidence 45677888888875 222 2554 48999999999999999 44445677665 2222110
Q ss_pred ----CcccCCCcEEEEEEEEeeecChHHHHHHHhhcCCCCc-----hhHHHHHHHHHhcCCCCC----ccccccccccCC
Q 002204 203 ----SSTRLRERQFRVVIRLASKPDLYTLQQFLRRRHFEAP-----YEVIQVLAVVLRAAPSEK----HTVVGRSFFSTD 269 (954)
Q Consensus 203 ----~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~-----~~~iq~Lniilr~~~~~~----~~~~Gr~Ff~~~ 269 (954)
.....+++.|+|+|++++++++.+|.+||.|.....+ .+++++||+||++.+... +...|++||..+
T Consensus 168 ~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~ 247 (1046)
T 4f1n_A 168 LQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFN 247 (1046)
T ss_dssp ----------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECS
T ss_pred ccccccccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCC
Confidence 0001456789999999999999999999999865422 578999999999865322 444456788654
Q ss_pred C-CCCcccCCceEEEeceeeeeeeccceeEEeeeccccceecC-----------------ccHHHHHHHHhh--c-----
Q 002204 270 L-GPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEP-----------------ILVTEFVQNYCR--D----- 324 (954)
Q Consensus 270 ~-~~~~~l~~gle~w~G~~~Svr~~~~~l~LniDvs~~~F~~~-----------------~~l~d~i~~~~~--~----- 324 (954)
. +...+|++|+|+|+|||+||||++++|+||||+++++||+. ++|+|+|.++++ +
T Consensus 248 ~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~ 327 (1046)
T 4f1n_A 248 NFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDI 327 (1046)
T ss_dssp TTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhccccccccc
Confidence 2 24678999999999999999999999999999999999984 799999999874 1
Q ss_pred -----cCCCCCHHHH-------HHHHHHhcCcEEEEeecC-------------CcceEEEecccCCCCCCcEEecCCC--
Q 002204 325 -----LSHPLSDEVR-------LKVKKALKGIKVVLTHRE-------------YNNSHKITGISSQPMSQLMFTDDSA-- 377 (954)
Q Consensus 325 -----~~~~l~~~~~-------~~l~~~Lkgl~V~~~~~~-------------~~r~~~I~~i~~~~a~~~~F~~~~G-- 377 (954)
..+.++..++ .+++++|+|++|+++|.+ ..+.|+|.||+..++.+.+|..++|
T Consensus 328 ~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~ 407 (1046)
T 4f1n_A 328 RYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSL 407 (1046)
T ss_dssp SCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC--------
T ss_pred cccccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCcc
Confidence 1233443444 789999999999999974 1134999999999999999932222
Q ss_pred ------------ccccHHHHHHHHcCCccCCCCCCeEecCCCCCcccccccceEeccCccccccCCHHHHHHHHHhhcCC
Q 002204 378 ------------TRMSVIQYFRERYNIALQFTSLPALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQR 445 (954)
Q Consensus 378 ------------~~iSv~~Yf~~~Y~i~L~~p~lP~v~~g~~~k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~ 445 (954)
.+|||+|||+++||++|+||+||||++|++ .+|||||||.|+|||+|+++|++ +++||++||++
T Consensus 408 ~~~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~r 483 (1046)
T 4f1n_A 408 KKNSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIR 483 (1046)
T ss_dssp ---------------CHHHHHHHHSCCCCSCTTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCC
T ss_pred cccccccCCcCceEEEHHHHHHHHhCcccCCCCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHHHHccC
Confidence 579999999999999999999999999975 38999999999999999999997 47999999999
Q ss_pred hHHHHHHHHHHHH-----hccCCCchhhhhccCeEEcCcceEEeeEEeCCCceeeccCCcc-------cccCCCCCcccc
Q 002204 446 PREREENIRMMAR-----ANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGRE-------ASVNPGFGQWNM 513 (954)
Q Consensus 446 P~~R~~~I~~~~~-----~~~~~~~~~l~~~fGi~i~~~~~~v~arvL~~P~i~y~~~~~~-------~~~~p~~G~Wnl 513 (954)
|.+|++.|.+... .+.++.++.|+ +|| +|+.+|++|+|||||||.|.|+++... ....|++|.|||
T Consensus 484 P~eR~~~I~~~~~~~~~~~l~~~~~~~l~-~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm 561 (1046)
T 4f1n_A 484 PTEKFDLISRLSMPAIKRGLTDSEKEESS-APH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNM 561 (1046)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCC----------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCC
T ss_pred cHHHHHHHHHHHHHhhhccccccccHhHH-hcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCcccC
Confidence 9999999998642 24446678898 999 999999999999999999999874311 013466899999
Q ss_pred ccceeecCce-eeeeEEEEeC-CC-----CCHHHHHHHHHHHHHHHhhCCccccCC--Ceee---------ccCC-----
Q 002204 514 INKKMFNGGR-VEVWTCVNFS-TR-----LNRDVAFQFCQGLVDMCNSKGMVFNLR--PVIP---------ISSS----- 570 (954)
Q Consensus 514 ~~~kf~~~~~-i~~W~vv~~~-~~-----~~~~~~~~f~~~L~~~~~~~G~~i~~~--p~~~---------~~~~----- 570 (954)
++++|++++. +.+|.++++. .. ...++++.|++.|.+.|+.+||.+..+ |.+. +...
T Consensus 562 ~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r 641 (1046)
T 4f1n_A 562 KGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGR 641 (1046)
T ss_dssp TTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC----------
T ss_pred CCCEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCccccccccccccccccccccc
Confidence 9999999874 5677665542 21 134688999999999999999999753 3221 1000
Q ss_pred ---------------------ChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCC-CCh-hHHHHHHhhhccCceeeeeec
Q 002204 571 ---------------------NPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-SGS-YGRIKRVCETELGIVSQCCQP 627 (954)
Q Consensus 571 ---------------------~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~-~~~-Y~~IK~~~~~~~GI~TQci~~ 627 (954)
...+.+..|.++++++ .+++|||||||++ +.+ |+.||++||+++||+||||+.
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~ 717 (1046)
T 4f1n_A 642 GGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI----PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVW 717 (1046)
T ss_dssp ------------------CCCBCCTTHHHHHHHHHTC----CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEH
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHhc----CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEeh
Confidence 0023456677777654 5789999999998 556 999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHhhcCCcceeecccccccCCccC----CCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCc
Q 002204 628 RQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVT----DRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPE 703 (954)
Q Consensus 628 ~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~----~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~ 703 (954)
+++.|.++||++|||||||+||||+||.|... .++.+. ..+|||||+||+|++++. .+||||||||+| .+
T Consensus 718 ~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d-~~ 791 (1046)
T 4f1n_A 718 DNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYD-DK 791 (1046)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCS-SS
T ss_pred hhhccccHHHHHHHHHHHHHhcCCeeeecccc---ccccccccccCCceEEEeeeeecCCCCC--CCeeeEEEEEEC-CC
Confidence 99999999999999999999999999999754 234332 346999999999953332 469999999999 79
Q ss_pred ccceEEEEEeccC-chhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHh-cCCCCceEEEEecCCChhhHHHHHHHHHHH
Q 002204 704 VAKYRGLVSAQAH-HEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRS-TNFKPHRIIFYRDGVGERQFSQVLLHEMNA 781 (954)
Q Consensus 704 ~~~y~~~~~~Q~~-~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~-~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~ 781 (954)
+++|.+.+++|.+ ++|+|++| ++|+.++|+.|++. ++.+|++|||||||||||||.+|+++|+++
T Consensus 792 ~t~y~s~~~~Q~~~~~Eii~~L-------------~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~ 858 (1046)
T 4f1n_A 792 FTQFPGDYMLQDGPGEEIITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKS 858 (1046)
T ss_dssp CCCCCEEEEEEEEETCCSCTTG-------------GGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHH
T ss_pred cCeEeeEEEEecCCCccHHHHH-------------HHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHH
Confidence 9999999999998 99999999 99999999999998 789999999999999999999999999999
Q ss_pred HHHHHHccc------CCCCCCEEEEEEeeecccccCcCCCCCCCCC------CCCCCCCceeEeeccccCCCcccEEEee
Q 002204 782 IRQACASLE------EGYAPPVTFVVVQKRCRTRLFPAENNRCDLT------DRSGNILPGTVVDTEICHPTEFDFYLNS 849 (954)
Q Consensus 782 I~~a~~~~~------~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~------~~~~N~~pGTVVD~~It~p~~~dFyL~S 849 (954)
|++||.++. .+|+|+||||||+||||||||+.+.++.|.. ++.+|++||||||++||||.+|||||||
T Consensus 859 Ik~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~S 938 (1046)
T 4f1n_A 859 IKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQS 938 (1046)
T ss_dssp HHHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEEC
T ss_pred HHHHHHHhhhhcccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEc
Confidence 999999884 5799999999999999999999754321111 2378999999999999999999999999
Q ss_pred cCCcccccccceEEEEecCCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhhccccC----CCCCCC
Q 002204 850 HAAIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIEDETS----AGGSTD 925 (954)
Q Consensus 850 h~~~qGTarPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~~~~~----d~~s~~ 925 (954)
|+++|||||||||+||+||++|++|+||+|||+|||+|+|||++|||||||||||++|+|||+|+...+. ++++.+
T Consensus 939 h~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~ 1018 (1046)
T 4f1n_A 939 HQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEK 1018 (1046)
T ss_dssp SCCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC----
T ss_pred cccCCCcccCcEEEEEeCCCCCCHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986432 232222
Q ss_pred CCCCcccccccCCCCccccccCCCCeeeC
Q 002204 926 GNRSTAERNLAIRPLPVIKDNVKDVMFYC 954 (954)
Q Consensus 926 ~~~~~~~~~~~~~~~~~v~~~~~~~M~y~ 954 (954)
++.. ....+...+|+.||++++++||||
T Consensus 1019 ~~~~-~~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1019 GSKD-QPTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp -------CCCHHHHSCCCCGGGTTSCTTC
T ss_pred CCcc-ccccCcccccchhhhhhccceeeC
Confidence 2111 112233456899999999999997
No 3
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=6.9e-102 Score=889.94 Aligned_cols=411 Identities=29% Similarity=0.490 Sum_probs=293.2
Q ss_pred cccceeec-CceeeeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCccccCCC---eeeccCCChhhHHHHHHHHHHhhhc
Q 002204 513 MINKKMFN-GGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRP---VIPISSSNPNQIEKALVDVHNRTTQ 588 (954)
Q Consensus 513 l~~~kf~~-~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p---~~~~~~~~~~~~~~~L~~~~~~~~~ 588 (954)
+++++|++ ++++++|+|+++..+.+.+.++.|++.|.+.|+.+||.+..+. .+.....+.+.+ .++++.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH--HHHHhhcc---
Confidence 46789999 7899999999996444667889999999999999999997653 222222222222 33443321
Q ss_pred CCCCceEEEEEeCCCCCh-hHHHHHHhhhccCceeeeeecccccccchh--hHHHHHHHHHhhcCCcceeecccccccCC
Q 002204 589 QGKQLQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIP 665 (954)
Q Consensus 589 ~~~~~~lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip 665 (954)
.+++|||||+|+++.+ |+.||++||++.||+||||..+++.|.++| |+.||+||||+||||+||.|+.. +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~ 150 (437)
T 2yhb_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (437)
T ss_dssp --HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CH
T ss_pred --CCCcEEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----cc
Confidence 3799999999998877 999999999999999999999999888888 99999999999999999999753 55
Q ss_pred ccCCCCeEEEEEeecCCC---CC--CCCCCeEEEEEeeeCCCcccceEEEEEecc-CchhhhhhhhhhcCCCCCccchhh
Q 002204 666 LVTDRPTIIFGADVTHPQ---PG--EDSSPSIAAVVASMDWPEVAKYRGLVSAQA-HHEEIIQDLYKSIQDPQRGFVHGG 739 (954)
Q Consensus 666 ~~~~~~tmiiG~DV~Hp~---~~--~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~~~~ 739 (954)
++.+.+|||||+||+||+ |+ ....|||||+|||+| .++++|.+.+++|. +++|+|++| ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (437)
T 2yhb_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (437)
T ss_dssp HHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred ccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HH
Confidence 566689999999999998 76 346799999999999 99999999999999 999999999 99
Q ss_pred HHHHHHHHHHH---hcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCC-CCCEEEEEEeeecccccCcCCC
Q 002204 740 MIRELLIAFRR---STNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRCRTRLFPAEN 815 (954)
Q Consensus 740 ~i~~~L~~f~~---~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~-~P~it~Ivv~KRh~tRff~~~~ 815 (954)
|++++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.+++.+| +|+||||||+||||||||+.+.
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~ 296 (437)
T 2yhb_A 217 KFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDP 296 (437)
T ss_dssp HHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------
T ss_pred HHHHHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCc
Confidence 99999999999 8899999999999999999999999999999999999998887 8999999999999999999876
Q ss_pred CCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCcccccccceEEEEecCC------CCChhHHHHHHHHhhhcccc
Q 002204 816 NRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDEN------RFTADGLQVLTNNLCYTYAR 889 (954)
Q Consensus 816 ~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~------~~~~d~Lq~lTy~LC~~y~r 889 (954)
++. .++.+||+||||||++||||.+|||||+||.++|||||||||+||+||+ ++++|+||+|||+|||+|+|
T Consensus 297 ~~~--~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r 374 (437)
T 2yhb_A 297 KHI--HFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGR 374 (437)
T ss_dssp ---------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC---
T ss_pred ccc--ccccCCCCCceEecccccCCCCceEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHhhcc
Confidence 431 1268999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred cCCCccccchhHHHHHHHHHHhhhhccccC--CCCCCCCCCCcccccccCCCCccccccCCCCeeeC
Q 002204 890 CTRSVSVVPPAYYAYLAAFRARYYIEDETS--AGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 954 (954)
Q Consensus 890 ~t~sVsiPaP~yYA~~~a~Rar~~l~~~~~--d~~s~~~~~~~~~~~~~~~~~~~v~~~~~~~M~y~ 954 (954)
||++||||||+||||++|+|||+||.+..+ +++|+++++ .. .....+.++|++|+++||||
T Consensus 375 ~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 375 ATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTD--DF--ARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp -------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCHH--HH--HHHHHHTSCCGGGTTSCTTC
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHhhhhccCCCCCCccCCC--Cc--cccccccccCHhhcCCceeC
Confidence 999999999999999999999999986432 222222211 10 11122568999999999997
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=6.2e-99 Score=906.45 Aligned_cols=618 Identities=13% Similarity=0.140 Sum_probs=473.0
Q ss_pred ceeeeCCceEEecCCCCCCCceEEEEcCCCCCCCCCcccCCCcEEEEEEEEeeecChHHHHHHHhhcCCCCchhHHHHHH
Q 002204 168 IPAYDGMKSIYTAGPLPFESKEFIINLPDSDPRPSSSTRLRERQFRVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQVLA 247 (954)
Q Consensus 168 ~~~yDG~~~lys~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Ln 247 (954)
.+.|-...-.|+.++...+.. -++..++ . .|+|+++++++.- ....+.+++|+++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 102 (706)
T 1yvu_A 48 LPTFRREDEFWCAGKVEKDTL--YLTLSNG------------E--IVELKRVGEEEFR---------GFQNERECQELFR 102 (706)
T ss_dssp SCEEEETTEEEESSCCTTCCC--EEEECSS------------S--CEEEEECCCEECC---------CCSCHHHHHHHHH
T ss_pred CccccccccceeccccccceE--EEEcCCC------------C--EEEEEEEEEeecc---------CCCCCHHHHHHHH
Confidence 355666678999998876543 3332221 1 5779999877510 0124578999999
Q ss_pred HHHhcCCCCCccccccccccCCCCCCccc---CCceEEEeceeeeeeecc-ceeEEeeeccccceecCccHHHHHHHHhh
Q 002204 248 VVLRAAPSEKHTVVGRSFFSTDLGPMGQL---GDGVEYWRGYFQSLRPTQ-MGLSLNIDVSASSFYEPILVTEFVQNYCR 323 (954)
Q Consensus 248 iilr~~~~~~~~~~Gr~Ff~~~~~~~~~l---~~gle~w~G~~~Svr~~~-~~l~LniDvs~~~F~~~~~l~d~i~~~~~ 323 (954)
.+|+.. .+++..+||+||++. ....+ .++||+|+||.+||+..+ ++++|++|++|+ |.+..||+|+|.+ ..
T Consensus 103 ~~~~~~-~l~~~~igr~~~~~~--~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~ 177 (706)
T 1yvu_A 103 DFLTKT-KVKDKFISDFYKKFR--DKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-ND 177 (706)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHH--HHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CC
T ss_pred HHHHHc-CChHhhhCccccCcc--ccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeee-ecccchHHHHHHH-hh
Confidence 999987 455668999999987 34566 467999999999999998 999999999999 8999999999988 42
Q ss_pred ccCCCCCHHHHHHHHHHhcCcEEEEeecCCcceE--EEecc-cCCCCCCcEEecCCCccccHHHHHHHHcCCc-------
Q 002204 324 DLSHPLSDEVRLKVKKALKGIKVVLTHREYNNSH--KITGI-SSQPMSQLMFTDDSATRMSVIQYFRERYNIA------- 393 (954)
Q Consensus 324 ~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~r~~--~I~~i-~~~~a~~~~F~~~~G~~iSv~~Yf~~~Y~i~------- 393 (954)
. .. ..+..+| ++++| +|++| +|+..+..+|. +|..+| ||+++|++.
T Consensus 178 ~----~~-------------~~~~~~y--~n~ty~~riddi~~~~~~P~~~f~--~g~~iS---Yyk~~~~~~q~ll~~r 233 (706)
T 1yvu_A 178 F----NP-------------KRIRVKP--IGIDFVGRVQDVFKAKEKGEEFFR--LCMERS---THKSSKKAWEELLKNR 233 (706)
T ss_dssp C----CC-------------TTCEEEE--TTCCCCEEEEEEEESTTSCHHHHH--HHHHTC---SSHHHHHHHHHHHHCH
T ss_pred h----cc-------------hhHHhhc--ccceeccccCcccccCCCcceEec--CCCCcc---eEecccCcchhhhhcc
Confidence 1 11 1234556 34567 99998 99999999994 466788 999988766
Q ss_pred -cCCCCCCeEecCCCCCcccccccceEeccCccccccCCHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCCchhhhhcc
Q 002204 394 -LQFTSLPALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQRPREREENIRMMARANAYNEDTLVNKEF 472 (954)
Q Consensus 394 -L~~p~lP~v~~g~~~k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~~f 472 (954)
.+.+.+|+++.+. +. .|+++|.. -.+.++|+++|+++|+++++.+|++|.+.|.++++.+ ++.|+ +|
T Consensus 234 ~~~~~~~~~~v~~~--~~--~p~~lL~p---lc~~t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~-~f 301 (706)
T 1yvu_A 234 ELREKAFLVVLEKG--YT--YPATILKP---VLTYENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALR-DY 301 (706)
T ss_dssp HHHHHCEEEEETTS--CE--EEGGGEEE---CCCCC------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHH-TT
T ss_pred ccccCCceEEeccC--CC--CCceeecc---ccccCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHH----HHHHH-Hc
Confidence 4445555555443 22 13444322 1234589999999999999999999999999998764 47788 99
Q ss_pred CeEEcCcceEEeeEEeCCCceeeccCCcccccCCCCCccccccceeecCceeee---eEEEEeCCCCCHHHHHHHHHHHH
Q 002204 473 GIQVADDLTSVDARILPAPMLKYHETGREASVNPGFGQWNMINKKMFNGGRVEV---WTCVNFSTRLNRDVAFQFCQGLV 549 (954)
Q Consensus 473 Gi~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~---W~vv~~~~~~~~~~~~~f~~~L~ 549 (954)
||+|+++|++|+||+||+|+|.++.+.......+..|.|++. ++|+.++.++. |.+++ .. .+ ..++.|++.|.
T Consensus 302 Gi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~lW~~i~-~~-~~-~~~~~f~~~L~ 377 (706)
T 1yvu_A 302 GWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLELC-RPFVKKDVLSVEIISVSVY-KK-LE-WRKEEFLKELI 377 (706)
T ss_dssp TEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHHHC-CCCCSCSEEEEEEEEEEC--------CHHHHHHHHHH
T ss_pred CCEECCceeecccEEcCCceeecCCCCcceeccCCccccccc-CceecccccccceEEEEEe-cc-hh-HHHHHHHHHHH
Confidence 999999999999999999999864322112222334556664 56888888999 85543 32 22 27899999999
Q ss_pred HHHhhCCccccCCCeeeccCCChhhHHHHHHHHHHhhhcCCCCceEEEEEeCCC-------CCh-hHHHHHHhhhccCce
Q 002204 550 DMCNSKGMVFNLRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-------SGS-YGRIKRVCETELGIV 621 (954)
Q Consensus 550 ~~~~~~G~~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~lvlvilp~~-------~~~-Y~~IK~~~~~~~GI~ 621 (954)
+.|+.+||.+..++......+ .+++.++.+.+... +..++|++|||+|++ +.+ |+.||++|+ +.||+
T Consensus 378 ~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~l~~~~~-~~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~-~~GI~ 452 (706)
T 1yvu_A 378 NFLKNKGIKLKIKGKSLILAQ---TREEAKEKLIPVIN-KIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIP 452 (706)
T ss_dssp HHHHTTTCEEEEEEEEEEECS---STTHHHHHHHHHHT-TTSSCSEEEEEEC----------CHHHHHHHHHHH-HTTCC
T ss_pred HHHHHcCceecCCccccccch---hHHHHHHHHHHHhc-ccCCCcEEEEEECCccccccccCccHHHHHHHHHh-cCCCc
Confidence 999999999975533322222 33444554443321 125799999999997 666 999999865 99999
Q ss_pred eeeeeccccccc-chhhHHHHHHHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeC
Q 002204 622 SQCCQPRQASRL-NMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMD 700 (954)
Q Consensus 622 TQci~~~~~~k~-~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d 700 (954)
||||..+++.+. +.|++.||++|||+||||+||.|.. | ...+|||||+||+||+.+. ..||++|+|||+|
T Consensus 453 TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~------~--~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d 523 (706)
T 1yvu_A 453 SQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE------I--EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN 523 (706)
T ss_dssp CEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC------C--TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC
T ss_pred eEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeecc------C--CCCceEEEEEEEeccCCCC-CCceEEEEEEEEc
Confidence 999999998764 5799999999999999999999864 2 1367999999999997443 3599999999999
Q ss_pred CCc--ccceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHHHhcCCCCceEEEEecCCChhhHHHHHHHH
Q 002204 701 WPE--VAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHE 778 (954)
Q Consensus 701 ~~~--~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E 778 (954)
.. +++|.+....| .++|++++| +..+|+.|++.++.+|++|||||||||| ++|
T Consensus 524 -~~g~~~~~~~~~~~q-~~~ei~~~l----------------~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~E 578 (706)
T 1yvu_A 524 -SKGELVRYYLTSYPA-FGEKLTEKA----------------IGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDE 578 (706)
T ss_dssp -TTSCEEEEEEEEECS-CTTHHHHHH----------------HHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHH
T ss_pred -CCCCEEEEEEEeccc-ccchHHHHH----------------HHHHHHHHHHhcCCCCcEEEEEeCCCCc-------HHH
Confidence 54 57787776655 478888654 4455677888888999999999999999 899
Q ss_pred HHHHHHHHHcccCCCCCCEEEEEEeeecccccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCC-ccccc
Q 002204 779 MNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAA-IQGTS 857 (954)
Q Consensus 779 ~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~-~qGTa 857 (954)
+++|++||.+ |.|+||||||+||||+|||+. +||+||||||. ..+||||++|++ +|||+
T Consensus 579 l~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~-----------~np~pGTvVD~-----~~~~ffL~ss~~~~qGT~ 638 (706)
T 1yvu_A 579 VAAFKKYGEL----YGYSLELLEIIKRNNPRFFSN-----------EKFIKGYFYKL-----SEDSVILATYNQVYEGTH 638 (706)
T ss_dssp HHHHHHHHHH----HTCEEEEEEEECSSCCCEECS-----------CSCCTTEEEEB-----SSSEEEECCSCCCSTTCC
T ss_pred HHHHHHHHHH----cCCcEEEEEEEeccCeeEECC-----------CCCCCeEEEEc-----CCCeEEEEecCCccCCCC
Confidence 9999999987 479999999999999999985 25999999994 468899988766 99999
Q ss_pred ccceEEEEecCCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhhcc
Q 002204 858 RPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIED 916 (954)
Q Consensus 858 rPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~~ 916 (954)
||+||+|+++|. ++|+||+|||+|||+|+||+++||||+||||||++|+||+.+++.
T Consensus 639 rPthY~vv~~D~--~~d~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~p 695 (706)
T 1yvu_A 639 QPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEP 695 (706)
T ss_dssp CCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSC
T ss_pred CCEEEEEEeCCC--CHHHHHHHHHHHHHhccccCCCcccChHHHHHHHHHHHHHhcCCc
Confidence 999999444444 999999999999999999999999999999999999999999874
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=2.2e-90 Score=830.48 Aligned_cols=658 Identities=14% Similarity=0.087 Sum_probs=479.1
Q ss_pred eEEEEeeEEEEEc---CCcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhcccCCCceeeeCCce--EEecCCCCCCCc
Q 002204 114 KCVVRANHFMVQL---AERDIHHYDVSITPWVTSRKINRQIISQLINLYRLTDLGERIPAYDGMKS--IYTAGPLPFESK 188 (954)
Q Consensus 114 ~i~v~tN~f~i~~---~~~~iy~YdV~i~P~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~--lys~~~Lp~~~~ 188 (954)
++.|.+|||++.. |+ .+|||+|+|.|+++.+ ++..++ ..|++ .+| ..+|||. . ||++++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~~p~~~~~-~~~~~~----~~~~~-~~g--~~~fdg~-~~~l~~~~~l~~--- 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFNDPEEELQ-KEGYSI----YRLAY-ENV--GIVIDPE-NLIIATTKELEY--- 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-------------CCH----HHHHH-HTT--EEEEETT-TTEEEESSCCCC---
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeecCChHHHH-HHHHHH----HHHHh-hcC--cEEecCc-ceeeeccceecc---
Confidence 5789999999986 55 9999999999998876 444333 34443 356 4689996 6 999999961
Q ss_pred eEEEEcCCCCCCCCCcccCCCcEEEEEEEEeeecChHHHHHHHhhcCCCCchhHHHHHHHHHhcCC-CCC-----ccccc
Q 002204 189 EFIINLPDSDPRPSSSTRLRERQFRVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQVLAVVLRAAP-SEK-----HTVVG 262 (954)
Q Consensus 189 ~~~v~l~~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~-~~~-----~~~~G 262 (954)
+ ...+.|+++.+++++ +|++|+++|... .++ +..+|
T Consensus 70 -------~------------~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~ 111 (771)
T 1u04_A 70 -------E------------GEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLL 111 (771)
T ss_dssp -------S------------SCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred -------C------------CCeEEEEEEEcceec-------------------HHHHHHHHHHHHHHcccchHHHHHHh
Confidence 1 123678888777653 789999999843 444 77899
Q ss_pred cccccCCCCCCcccCCceEEEeceeeeeeeccceeEEeeeccccceecCccHHHHHHHHhhccCCCCCHHHHHHHHHHhc
Q 002204 263 RSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSASSFYEPILVTEFVQNYCRDLSHPLSDEVRLKVKKALK 342 (954)
Q Consensus 263 r~Ff~~~~~~~~~l~~gle~w~G~~~Svr~~~~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lk 342 (954)
|+||++ ..+ +.+++|+|+.+||+..+++++|++|++|++ .+..||+|+|.++. ...+.+...+.
T Consensus 112 r~~~~~-----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~---------~~~~~~~~~~~ 175 (771)
T 1u04_A 112 RKFRKP-----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDP---------KELEEFLMTHK 175 (771)
T ss_dssp TTTSCC-----EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCH---------HHHHHHHHHST
T ss_pred hhcCCC-----ccc-cccEEEECceeeEEecCCceEEEEEeeeeE-eehhHHHHHHHHHH---------HHHHHHHHhcc
Confidence 999986 233 568899999999999999999999999996 68999999986543 24456667778
Q ss_pred CcEEEEe--------ecCCcceEEEecccCCCCCCc--EE---ecCCC-ccccHHHHHHHHcCCccCCCCCCeEecCCC-
Q 002204 343 GIKVVLT--------HREYNNSHKITGISSQPMSQL--MF---TDDSA-TRMSVIQYFRERYNIALQFTSLPALVAGSE- 407 (954)
Q Consensus 343 gl~V~~~--------~~~~~r~~~I~~i~~~~a~~~--~F---~~~~G-~~iSv~~Yf~~~Y~i~L~~p~lP~v~~g~~- 407 (954)
|.-|.+. |+.|+++|++++ .++..+.+ +| ..++| ..+++.+||.++|++ ++++||+|+.+.+
T Consensus 176 g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~~~ 252 (771)
T 1u04_A 176 ENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQ--VDLKQPAILAKFAS 252 (771)
T ss_dssp TTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHCS--CCTTSCEEEEEESC
T ss_pred CcEEeeeccccceeEeecccceeecCC-ccccCCCChhheeceeecCCCCCcchhHHHHHhcCc--CcCCCCeEEecchh
Confidence 8888777 765667788877 66555544 45 32221 345777777799995 8999999998642
Q ss_pred ------CCcccccccceEeccCccccccCCHHHHHHHHHhhcCChHHHHHHHHHHHHhc-----cCCC--chhhhhccCe
Q 002204 408 ------ARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQRPREREENIRMMARAN-----AYNE--DTLVNKEFGI 474 (954)
Q Consensus 408 ------~k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~-----~~~~--~~~l~~~fGi 474 (954)
++.+||.||||.+++ ...+++.+.+++|..++...|++|.+.|.++++++ .-+. .+.|+ .||
T Consensus 253 ~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~-~~~- 327 (771)
T 1u04_A 253 KIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEK-IAQ- 327 (771)
T ss_dssp C-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEE-CCG-
T ss_pred hccCCCCceeeechHhhhhcC---chhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHh-hhh-
Confidence 346999999999996 23355667788999999999999999999999887 2221 13455 677
Q ss_pred EEcCcceEEeeEEeCCCceeeccCCcccccCCCCCccc--cccceeecCce----ee------eeEEEEeCCCCCHHHHH
Q 002204 475 QVADDLTSVDARILPAPMLKYHETGREASVNPGFGQWN--MINKKMFNGGR----VE------VWTCVNFSTRLNRDVAF 542 (954)
Q Consensus 475 ~i~~~~~~v~arvL~~P~i~y~~~~~~~~~~p~~G~Wn--l~~~kf~~~~~----i~------~W~vv~~~~~~~~~~~~ 542 (954)
.++.. +.|.++++.+-.|..++- ..+..++|. +++.+++.+.. ++ .|++++ .+ ..+.+.
T Consensus 328 ~l~~~-~~v~~~~~~~~~i~~~~~-----~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~~-~~--~~~~~~ 398 (771)
T 1u04_A 328 ELENK-IRVRDDKGNSVPISQLNV-----QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIILD-SG--LLADIQ 398 (771)
T ss_dssp GGGSS-EEEECSSSCEEESCCC-------------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEEE-TT--SCHHHH
T ss_pred ccCcC-cccccccccccceeecCc-----CCCccCCcchhhCCCcceecccchhhhhcccccceEEEEe-CC--chHHHH
Confidence 46655 666655554433443320 123468994 56777755442 44 466654 43 366777
Q ss_pred HHH---------HHHHHHHhh-----------CCccccCC------CeeeccCCChhhHHHHHHHHHHhhhcCCCCceEE
Q 002204 543 QFC---------QGLVDMCNS-----------KGMVFNLR------PVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLL 596 (954)
Q Consensus 543 ~f~---------~~L~~~~~~-----------~G~~i~~~------p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~lv 596 (954)
+|+ +.|.+.+.. +||.++.+ +.+.....+.+.++..++.+.++.. ...++|+
T Consensus 399 ~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~--~~~~~lv 476 (771)
T 1u04_A 399 NFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMK--GKELGLA 476 (771)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHHHHHHHHHHHHHT--TCSCEEE
T ss_pred HHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccchHHHHHHHHHHHHhcc--CCCCCEE
Confidence 888 445454432 33444321 1111111123567778888776643 2468998
Q ss_pred EEEeC-CCCCh-hHHHHHHhhhccCceeeeeeccccccc----c-----hhhHHHHHHHHHhhcCCcceeecccccccCC
Q 002204 597 IIILP-DVSGS-YGRIKRVCETELGIVSQCCQPRQASRL----N-----MQYFENVALKINVKVGGRNTVLVDAVQKRIP 665 (954)
Q Consensus 597 lvilp-~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~----~-----~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip 665 (954)
||+++ .++.+ |+.||++| .+.||+||||..+|+.+. + .+++.||++|||+||||+||.|+. |
T Consensus 477 lv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~------p 549 (771)
T 1u04_A 477 FIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY------R 549 (771)
T ss_dssp EEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC------C
T ss_pred EEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHHHhCCcceeecC------C
Confidence 77774 44455 99999997 799999999999998643 2 678999999999999999999853 3
Q ss_pred ccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHH
Q 002204 666 LVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELL 745 (954)
Q Consensus 666 ~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L 745 (954)
. .++||||+||+|++++ ...++++|+|+|.| ....+|.+....|.+++ .+. + ..|+.++|
T Consensus 550 ~---~~tmiIGiDV~H~~~~-~~svs~~A~V~s~d-g~~~~~~s~~~~~~~~E-~i~-l-------------~~~l~~~L 609 (771)
T 1u04_A 550 F---NYDYIIGIDVAPMKRS-EGYIGGSAVMFDSQ-GYIRKIVPIKIGEQRGE-SVD-M-------------NEFFKEMV 609 (771)
T ss_dssp C---SSSEEEEEEEEEECCT-TTCEEEEEEEEETT-SCEEEEEEEECCCCSSS-SCC-H-------------HHHHHHHH
T ss_pred C---CCEEEEEEEEEcCCCC-CCceEEEEEEECCC-CCEEEEEEEEeecCCcc-EEc-H-------------HHHHHHHH
Confidence 2 5799999999999654 34688899999998 77788877655455544 443 6 78999999
Q ss_pred HHHHHh-cCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeecccccCcCCCCCCCCCCCC
Q 002204 746 IAFRRS-TNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAENNRCDLTDRS 824 (954)
Q Consensus 746 ~~f~~~-~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRff~~~~~~~~~~~~~ 824 (954)
.+|++. ++.+|+||||||||+ |+++|+++|++||.++ .|+||||+|+||||+||| .+
T Consensus 610 ~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF-~~---------- 667 (771)
T 1u04_A 610 DKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAF-AN---------- 667 (771)
T ss_dssp HHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBS-SC----------
T ss_pred HHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHHHHHhc----CCCEEEEEEEecCceeee-cC----------
Confidence 999998 588999999999997 7789999999999864 589999999999999999 21
Q ss_pred CCCCceeEeeccccCCCcccEEEeecC--CcccccccceE--EEEecCCCCC----hhHHHHHHHHhhhcccccCC-Ccc
Q 002204 825 GNILPGTVVDTEICHPTEFDFYLNSHA--AIQGTSRPTRY--HVLYDENRFT----ADGLQVLTNNLCYTYARCTR-SVS 895 (954)
Q Consensus 825 ~N~~pGTVVD~~It~p~~~dFyL~Sh~--~~qGTarPthY--~Vl~de~~~~----~d~Lq~lTy~LC~~y~r~t~-sVs 895 (954)
.+|||||| . ||||+||. +.|||++|+|| +||+|+++++ +|+||++||+|||+|+||++ +||
T Consensus 668 --~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~svr 737 (771)
T 1u04_A 668 --MKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMR 737 (771)
T ss_dssp --SCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCCCC
T ss_pred --CCCeeEEe-------C-CEEEEeccccCCCCCCCCEEEEEEEEecCCCCCCCCCHHHHHHHHHHhhhhcccCCCCCcc
Confidence 25899993 3 99999995 56999999999 9999999999 99999999999999999999 999
Q ss_pred ccchhHHHHHHHHHHhhhhcc
Q 002204 896 VVPPAYYAYLAAFRARYYIED 916 (954)
Q Consensus 896 iPaP~yYA~~~a~Rar~~l~~ 916 (954)
+||||||||++|++++.++..
T Consensus 738 vPAP~~YAhklA~lvgq~~~~ 758 (771)
T 1u04_A 738 LPAPVHYAHKFANAIRNEWKI 758 (771)
T ss_dssp SCHHHHHHHHHHHHHHTTCCC
T ss_pred CCchHHHHHHHHHHHHhhhcc
Confidence 999999999999999988764
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=7.3e-82 Score=744.16 Aligned_cols=637 Identities=17% Similarity=0.174 Sum_probs=466.0
Q ss_pred eEEEEeeEEEEE-c--CCcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhcccCCCceeeeCCceEEecCCCCCC-Cce
Q 002204 114 KCVVRANHFMVQ-L--AERDIHHYDVSITPWVTSRKINRQIISQLINLYRLTDLGERIPAYDGMKSIYTAGPLPFE-SKE 189 (954)
Q Consensus 114 ~i~v~tN~f~i~-~--~~~~iy~YdV~i~P~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~Lp~~-~~~ 189 (954)
++.|.-|-|.++ + .+...|.|+|.+.|..+..+..+ ++..+... +|. ..+==| ..|.|..+ |.. ..|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~-~~~~~~-~~~~~~~~-~~~~~~~ 76 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYP-LLAQVARR-----AGG-VTVRMG-DGLASWSP-PEVLVLE 76 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHH-HHHHHHHH-----TCS-SEEEET-TEEEESSC-TTTSCCE
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHH-HHHHHHHH-----hCC-eEEeec-CceecccC-chhhhcc
Confidence 488999999998 4 47889999999998766554444 33444432 343 222233 46777666 431 123
Q ss_pred EEEEcCCCCCCCCCcccCCCcEEEEEEEEeeecChHHHHHHHhhcCCCCchhHHH-----HHHHHHhcCCCCCccccccc
Q 002204 190 FIINLPDSDPRPSSSTRLRERQFRVVIRLASKPDLYTLQQFLRRRHFEAPYEVIQ-----VLAVVLRAAPSEKHTVVGRS 264 (954)
Q Consensus 190 ~~v~l~~~~~~~~~~~~~~~~~~~V~Ik~~~~i~l~~L~~~l~g~~~~~~~~~iq-----~Lniilr~~~~~~~~~~Gr~ 264 (954)
-.|.-. .+...|++.-.=.+.+|...-. ..+++. .|+-.|+.. .+...-|.-
T Consensus 77 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 133 (685)
T 3ho1_A 77 GTLARM-----------GQTYAYRLYPKGRRPLDPKDPG----------ERSVLSALARRLLQERLRRL--EGVWVEGLA 133 (685)
T ss_dssp EEEECS-----------SCEEEEEEEEEEECCCCTTSHH----------HHHHHHHHHHHHHHHHHHTC--SSSEEETTE
T ss_pred chhccc-----------cCCcceeeeecccccCCCCChH----------HHHHHHHHHHHHHHHHHHhh--hceEEccEE
Confidence 333210 2333465555544555553110 112322 233344444 222222322
Q ss_pred cccCCCCCCcccCCceEEEeceeeeeeecc-ceeEEeeeccccceecCccHHHHHHHHhhccCCCCCHHHHHHHHHHhcC
Q 002204 265 FFSTDLGPMGQLGDGVEYWRGYFQSLRPTQ-MGLSLNIDVSASSFYEPILVTEFVQNYCRDLSHPLSDEVRLKVKKALKG 343 (954)
Q Consensus 265 Ff~~~~~~~~~l~~gle~w~G~~~Svr~~~-~~l~LniDvs~~~F~~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lkg 343 (954)
.+-.. . .-|.|+|+.+|+...|.++. ++++|.||+.|. |+++.++.+++.+.. . |.
T Consensus 134 ~~~~~---~-~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~----------------~-~~- 190 (685)
T 3ho1_A 134 VYRRE---H-ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGH----------------P-LP- 190 (685)
T ss_dssp EEEEE---E-EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSC----------------C-CC-
T ss_pred EEeec---C-CCCCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhCC----------------C-cc-
Confidence 22211 1 22789999999999999997 999999999998 899999999987632 2 45
Q ss_pred cEEEEeecCCcceEEEecccCCCCCCcEEecCCCccccHHHHHHHHcCCccCCCCCCeEecCCC----CC-----ccccc
Q 002204 344 IKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQYFRERYNIALQFTSLPALVAGSE----AR-----PIYLP 414 (954)
Q Consensus 344 l~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~~Y~i~L~~p~lP~v~~g~~----~k-----~~ylP 414 (954)
..|.++|. .++|+|.+|+ +.+++..|.+. .||++|||+++|.+ +.-++|.|+...+ .+ .+||.
T Consensus 191 ~~v~~~y~--~~~~~~~~~~-~~~p~~~~l~~---~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~~l~ 262 (685)
T 3ho1_A 191 KRVRNAYD--RRTWELLRLG-EEDPKELPLPG---GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTGLLV 262 (685)
T ss_dssp SEEEESSS--CCEECCCEEE-CCCTTCC---------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETTSEE
T ss_pred HHHhhhcc--cceEEEeecc-cCCchheecCC---CccHHHHHhhcccc--cccCCceEEEEeccccCCCcceeeeeeec
Confidence 68999995 5689999999 56788888433 58999999999887 8889998775332 12 35999
Q ss_pred ccceEeccCccccccCCHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCCchhhhhccCeEEcCcceEEeeEEeCCCcee
Q 002204 415 MELSRIVAGQRYAKRLNERQVIALLRATCQRPREREENIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLK 494 (954)
Q Consensus 415 ~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~P~~R~~~I~~~~~~~~~~~~~~l~~~fGi~i~~~~~~v~arvL~~P~i~ 494 (954)
|||| +. .|++.+.. .+++..|++|++.+.++++.+ ++ .|||. +.+|++|+||+||||+|
T Consensus 263 p~l~-m~-------~l~~~~~~---~~trlsP~~R~~~l~~~~~~i-------~~-~~Gl~-~~~~i~v~gRvLppp~I- 321 (685)
T 3ho1_A 263 PVLT-LE-------DLHEEEGS---LALSLPWEERRRRTREIASWI-------GR-RLGLG-TPEAVRAQAYRLSIPKL- 321 (685)
T ss_dssp EECC-TT-------TTSSCSSC---CCCCCCHHHHHHHHHHHHHHH-------HH-TTCSC-CCEEEEEEEEECCCCCE-
T ss_pred hHhH-HH-------HHhhhhhh---ccccCCHHHHHHHHHHHHHHH-------HH-hcCCC-CCCcceEEEEEcCHHHh-
Confidence 9999 44 45554433 688999999999999997753 66 99998 99999999999999999
Q ss_pred eccCCcccccCCCCCccccccceeecCceeeeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCccccCCCeeeccCCChhh
Q 002204 495 YHETGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPISSSNPNQ 574 (954)
Q Consensus 495 y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~ 574 (954)
+++. . + .+.|++.+.+|+.++.. .|+++++.+. ...++.|++.|.+.|+.+||.|..+.......++ ..
T Consensus 322 ~g~~-~---~---~~~~d~~~~~~~~~~~~-~~ail~l~~~--~~~~~~f~~~L~~va~~~G~~i~~~~~~~~~~d~-~~ 390 (685)
T 3ho1_A 322 MGRR-A---V---SKPADALRVGFYRAQET-ALALLRLDGA--QGWPEFLRRALLRAFGASGASLRLHTLHAHPSQG-LA 390 (685)
T ss_dssp ESSS-B---C---SSGGGHHHHCCSSCCCE-EEEEEECSSC--CSCCHHHHHHHHHHHHSSSSCEEEEECCCCGGGT-HH
T ss_pred cCCC-C---c---CCchhhccCcceeccCc-eEEEEeccCc--hHHHHHHHHHHHHHHHhCCcEeccceeecCCCch-HH
Confidence 7642 1 1 24577777788887765 7999988652 3567799999999999999999742111111111 23
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEEeCCCCCh-hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHhhcCCcc
Q 002204 575 IEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 653 (954)
Q Consensus 575 ~~~~L~~~~~~~~~~~~~~~lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n 653 (954)
+...++++.+ .++|+||||+|++..+ |+.||++| .+.||+||||. +++.+...+++.||++|||+||||+|
T Consensus 391 ~~~~l~~~~~------~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKLGG~p 462 (685)
T 3ho1_A 391 FREALRKAKE------EGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKAGLQV 462 (685)
T ss_dssp HHHHHHHHHH------TTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhhh------cCCCEEEEEECCCCccHHHHHHHHH-hcCCCccEEEe-cccccccHhHHHHHHHHHHHHhCCee
Confidence 4445555443 4799999999999888 99999975 79999999999 88877778899999999999999999
Q ss_pred eeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCc--ccceEEEEEeccCchhhhhhhhhhcCCC
Q 002204 654 TVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPE--VAKYRGLVSAQAHHEEIIQDLYKSIQDP 731 (954)
Q Consensus 654 ~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~--~~~y~~~~~~Q~~~~E~i~~l~~~~~~~ 731 (954)
|.|+. |. .++||||+||+|++. .++++++++++ .+ ..+| +....|.+.++.+++|
T Consensus 463 W~L~~------P~---~~tmiIGiDVsH~~~-----~~~~~~aav~~-~dg~~~~~-~~~~~Q~~e~l~~~~L------- 519 (685)
T 3ho1_A 463 VALSG------AY---PAELAVGFDAGGRES-----FRFGGAACAVG-GDGGHLLW-TLPEAQAGERIPQEVV------- 519 (685)
T ss_dssp CEECS------CC---SCSEEEEEEEEETTE-----EEEEEEEEEEC-C--CCCEE-ECCCCCCSCCCHHHHH-------
T ss_pred EEecC------CC---CCeEEEEEEEEcCCC-----CccceEEEEEE-CCCCEEEe-EEEEccCCcEecHHHH-------
Confidence 99863 43 679999999999862 35666555555 43 3443 2345665544556788
Q ss_pred CCccchhhHHHHHHHHHHHhcCCCCceEEEEecCC-ChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeeeccccc
Q 002204 732 QRGFVHGGMIRELLIAFRRSTNFKPHRIIFYRDGV-GERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRL 810 (954)
Q Consensus 732 ~~~~~~~~~i~~~L~~f~~~~~~~P~~IIiyRDGV-sEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KRh~tRf 810 (954)
.+|+.++|+.|++.++.+|+||||||||| +|||+. +|++||+++ .+++|||||+||||+||
T Consensus 520 ------~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~----~~~~t~IvVqKRh~tRf 581 (685)
T 3ho1_A 520 ------WDLLEETLWAFRRKAGRLPSRVLLLRNGRVPQDEFA--------LALEALARE----GIAYDLVSVRKSGGGRV 581 (685)
T ss_dssp ------HHHHHHHHHHHHHHHSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT----TCEEEEEEEESSCCCCE
T ss_pred ------HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHH--------HHHHHHHhc----CCCEEEEEEEecCCceE
Confidence 99999999999999999999999999999 888664 566788765 37899999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeec--CCcccccccceEEEEecCCCCChhHHHHHHHHhhhccc
Q 002204 811 FPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSH--AAIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYA 888 (954)
Q Consensus 811 f~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh--~~~qGTarPthY~Vl~de~~~~~d~Lq~lTy~LC~~y~ 888 (954)
|+.+ .++.+||+|+. .+||||++| ++.|||++|+||+ +|++++++|+||++||+|||+|+
T Consensus 582 F~~n----------~pp~~Gt~v~~------e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~ 643 (685)
T 3ho1_A 582 YPVQ----------GRLADGLYVPL------EDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTRLYP 643 (685)
T ss_dssp EESS----------SCCCSSEEEEC------STTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGGCCS
T ss_pred ecCC----------CCCCCeEEEeC------CCCEEEEEecCCCCccCCceEEEE--ECCCCCCHHHHHHHHHHHHHhhc
Confidence 9963 35677777743 356666654 4689999999998 89999999999999999999999
Q ss_pred ccC-CCccccchhHHHHHHH-HHHhh
Q 002204 889 RCT-RSVSVVPPAYYAYLAA-FRARY 912 (954)
Q Consensus 889 r~t-~sVsiPaP~yYA~~~a-~Rar~ 912 (954)
||| ++||+|+||||||++| .|||.
T Consensus 644 nst~~svsvPAP~~YAhklAk~~~r~ 669 (685)
T 3ho1_A 644 ASGFAFPRLPAPLHLADRLVKEVGRL 669 (685)
T ss_dssp SCSSSCCSSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCcChHHHHHHHHHHHHHHh
Confidence 998 9999999999999999 66664
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=3.3e-84 Score=734.37 Aligned_cols=362 Identities=27% Similarity=0.464 Sum_probs=294.0
Q ss_pred cccceeec-CceeeeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCccccCCC---eeeccCCChhhHHHHHHHHHHhhhc
Q 002204 513 MINKKMFN-GGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRP---VIPISSSNPNQIEKALVDVHNRTTQ 588 (954)
Q Consensus 513 l~~~kf~~-~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p---~~~~~~~~~~~~~~~L~~~~~~~~~ 588 (954)
|++++|++ ++++++|+|+++..+.+.+.++.|++.|.+.|+.+||.+..+. .+.......+.+ .++++.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHh--HHHHhhcc---
Confidence 56789999 7899999999996544667889999999999999999997653 122222222222 33443321
Q ss_pred CCCCceEEEEEeCCCCCh-hHHHHHHhhhccCceeeeeecccccccchh--hHHHHHHHHHhhcCCcceeecccccccCC
Q 002204 589 QGKQLQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIP 665 (954)
Q Consensus 589 ~~~~~~lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q--~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip 665 (954)
.+++|||||+|+++.+ |+.||++||++.||+||||..+++.|.++| |+.||+||||+||||+||.|+.. +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~~ 150 (388)
T 2yha_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (388)
T ss_dssp --HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----CH
T ss_pred --CCCeEEEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceecccc----cc
Confidence 3799999999998877 999999999999999999999999888888 99999999999999999999753 45
Q ss_pred ccCCCCeEEEEEeecCCC---CC--CCCCCeEEEEEeeeCCCcccceEEEEEecc-CchhhhhhhhhhcCCCCCccchhh
Q 002204 666 LVTDRPTIIFGADVTHPQ---PG--EDSSPSIAAVVASMDWPEVAKYRGLVSAQA-HHEEIIQDLYKSIQDPQRGFVHGG 739 (954)
Q Consensus 666 ~~~~~~tmiiG~DV~Hp~---~~--~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~~~~ 739 (954)
++.+.+|||||+||+||+ || ....|||||||||+| .++++|.+.+++|. +++|+|++| ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (388)
T 2yha_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (388)
T ss_dssp HHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred ccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcC-CCCCEEEEEEEEcCCCcccHHHHH-------------HH
Confidence 566689999999999998 77 446899999999999 99999999999999 999999999 99
Q ss_pred HHHHHHHHHHH---hcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCC-CCCEEEEEEeeecccccCcCCC
Q 002204 740 MIRELLIAFRR---STNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRCRTRLFPAEN 815 (954)
Q Consensus 740 ~i~~~L~~f~~---~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~-~P~it~Ivv~KRh~tRff~~~~ 815 (954)
|+.++|+.|++ +++.+|++|||||||||||||.+|+++|+++|++||.+++.+| +|+||||||+||
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr---------- 286 (388)
T 2yha_A 217 KFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG---------- 286 (388)
T ss_dssp HHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc----------
Confidence 99999999999 8899999999999999999999999999999999999998887 899999999998
Q ss_pred CCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCcccccccceEEEEecCC------CCChhHHHHHHHHhhhcccc
Q 002204 816 NRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQGTSRPTRYHVLYDEN------RFTADGLQVLTNNLCYTYAR 889 (954)
Q Consensus 816 ~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~------~~~~d~Lq~lTy~LC~~y~r 889 (954)
+|||||+||+||+ ++++|+||+|||+|||+|+|
T Consensus 287 -----------------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r 325 (388)
T 2yha_A 287 -----------------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGR 325 (388)
T ss_dssp ---------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC---
T ss_pred -----------------------------------------cCCceEEEEeCCccccccCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999998 99999999999999999999
Q ss_pred cCCCccccchhHHHHHHHHHHhhhhccccC--CCCCCCCCCCcccccccCCCCccccccCCCCeeeC
Q 002204 890 CTRSVSVVPPAYYAYLAAFRARYYIEDETS--AGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 954 (954)
Q Consensus 890 ~t~sVsiPaP~yYA~~~a~Rar~~l~~~~~--d~~s~~~~~~~~~~~~~~~~~~~v~~~~~~~M~y~ 954 (954)
||++||||||+||||++|+|||+||.+..+ +++|+++++ .. .....+.++|++|+++||||
T Consensus 326 ~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 326 ATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTD--DF--ARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp -------CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCCHH--HH--HHHHHHTCCCGGGTTSCTTC
T ss_pred ccCCCCcCcHHHHHHHHHHHHHHHhhhhccCCCcccccCCC--cc--cccccccccCHHhcCCceeC
Confidence 999999999999999999999999986432 233322211 11 11122568999999999997
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=8.8e-56 Score=508.05 Aligned_cols=364 Identities=13% Similarity=0.064 Sum_probs=254.7
Q ss_pred EeCCCceeeccCCccc-----ccCCCCCccccccceeecCcee--eeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCccc
Q 002204 487 ILPAPMLKYHETGREA-----SVNPGFGQWNMINKKMFNGGRV--EVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVF 559 (954)
Q Consensus 487 vL~~P~i~y~~~~~~~-----~~~p~~G~Wnl~~~kf~~~~~i--~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i 559 (954)
.|..|.+.|+.++... ..+|..| +.+...+..... .+|++|+..+ +.+.++.|.+.+.... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~--~~~~l~~l~~~~~~~~-g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQ--FSSLINQLKSQISSKI-DEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCT--TCHHHHHHHHHHHHHH-HHTTCC
T ss_pred ccCCCcceeeccCCCcccccccCCHHHH---HHhcCCCccCCCCCCEEEEEECcc--cHHHHHHHHHhhhhcC-CCceee
Confidence 4667788888322111 1122222 333344444333 7899997654 2333444444333222 234444
Q ss_pred cCCCeeeccCCChhhHHHHHHHHHHhhhcCCCCceEEEEEe--------CCCCChhHHHHHHhhhccCceeeeeeccccc
Q 002204 560 NLRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIIL--------PDVSGSYGRIKRVCETELGIVSQCCQPRQAS 631 (954)
Q Consensus 560 ~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~lvlvil--------p~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~ 631 (954)
.... ++.+.+.+++++.++ .++|++|||+ |++..+|-.+|+ ++.+.||+||||..+|+.
T Consensus 79 ~~~~------~~~~~y~~~i~~~l~------~~~~lvlvilp~~~~~~~~~~~~~~y~~K~-~~~~~gvptQ~I~~~tl~ 145 (427)
T 2w42_A 79 HNIN------ISEFIYDSPHFDSIK------SQVDNAIDTGVDGIMLVLPEYNTPLYYKLK-SYLINSIPSQFMRYDILS 145 (427)
T ss_dssp CSCE------EEEEECSSSSHHHHH------HHHHHHHHHCCSEEEEEESSCCHHHHHHHH-HHHHTTSCEEEEEGGGCC
T ss_pred cCCc------CChHHHHHHHHHHhc------CCCCEEEEEEEccccccCCCCCcchHHHHH-HHhCCCcCcEEEEhhhcc
Confidence 3221 112222233333333 2578999999 666555445785 668999999999999998
Q ss_pred ccchh-hHHHHHHHHHhhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCcccceEEE
Q 002204 632 RLNMQ-YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVAKYRGL 710 (954)
Q Consensus 632 k~~~q-~~~Ni~lKiN~KlGG~n~~l~~~~~~~ip~~~~~~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~~y~~~ 710 (954)
+.+.+ ++.||++|||+||||+||.|+.. .|. .++||||+||+|++++ +++|++.+.| .+...+...
T Consensus 146 ~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~~~~~ 212 (427)
T 2w42_A 146 NRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTMLWNE 212 (427)
T ss_dssp TTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCEEEEE
T ss_pred cccchhHHHHHHHHHHHHhCCcceecccC----CCC---CCeEEEEEEEEEcCCC-----cEEEEEEEEc-CCCCEEEEE
Confidence 66654 48899999999999999999742 122 5699999999999754 5666655555 444444455
Q ss_pred EEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHHHH-hcCCCCc--eEEEEecCCChhhHHHHHHHHHHHHHHHHH
Q 002204 711 VSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAFRR-STNFKPH--RIIFYRDGVGERQFSQVLLHEMNAIRQACA 787 (954)
Q Consensus 711 ~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~~-~~~~~P~--~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~ 787 (954)
+..|.+++|++++| .+++.++|+.|++ .|+.+|+ ||||| ||+.+|.++|+++|++||.
T Consensus 213 ~~~~~~~~E~~~~l-------------~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~~ 273 (427)
T 2w42_A 213 ISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETVE 273 (427)
T ss_dssp ECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHHH
T ss_pred EEecCChhHHHHHH-------------HHHHHHHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHHH
Confidence 55666789999999 9999999999999 8999898 66898 8999999999999999999
Q ss_pred cccC----CCCCCEEEEEEeeecc-cccCcCCCCCCCCCCCCCCCCceeEeeccccCCCcccEEEeecCCccc------c
Q 002204 788 SLEE----GYAPPVTFVVVQKRCR-TRLFPAENNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAAIQG------T 856 (954)
Q Consensus 788 ~~~~----~~~P~it~Ivv~KRh~-tRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~dFyL~Sh~~~qG------T 856 (954)
++.. +++|+||||+|+|||| +|||..+. .+||+||||||.+ ++|||.+|.+.|+ +
T Consensus 274 ~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~--------~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~~~~ 339 (427)
T 2w42_A 274 ELKKQEMVSRDVKYAILHLNETHPFWVMGDPNN--------RFHPYEGTKVKLS------SKRYLLTLLQPYLKRNGLEM 339 (427)
T ss_dssp HHHHTTSSCTTCEEEEEEEEECCCEEEEC----------------CCSEEEESS------SSEEEEEEEC---------C
T ss_pred HhccccccCCCCCEEEEEEEccccceeeecCCC--------CCCCCCceEEEcC------CCeEEEEEEeeecccccccc
Confidence 9865 7899999999999999 89886431 4699999999983 5666666666665 4
Q ss_pred ---cccceEEEEec----CCCC-ChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhhhhc
Q 002204 857 ---SRPTRYHVLYD----ENRF-TADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARYYIE 915 (954)
Q Consensus 857 ---arPthY~Vl~d----e~~~-~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~~l~ 915 (954)
++||||+|++| |+++ ++|+||++||+|||+|+|||+++|+|+||||||++|++++...+
T Consensus 340 ~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~ 406 (427)
T 2w42_A 340 VTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNR 406 (427)
T ss_dssp EEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEEecCCcCcccCCCHHHHHHHHHHhhCcccCCCCCCCcCcchHhHHHHHHHHhhhhh
Confidence 33999999995 4555 48999999999999999999999999999999999999997544
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.95 E-value=1.1e-27 Score=235.57 Aligned_cols=142 Identities=56% Similarity=0.993 Sum_probs=127.2
Q ss_pred cceeecCceeeeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCccccCCCeeeccCCChhhHHHHHHHHHHhhhcC---CC
Q 002204 515 NKKMFNGGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPISSSNPNQIEKALVDVHNRTTQQ---GK 591 (954)
Q Consensus 515 ~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~---~~ 591 (954)
+++|++|+++++|+|+++++..+.+.++.|++.|.+.|+.+||.+..++.+.+...+++++++.|+++++++..+ +.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCC
Confidence 578999999999999999876677889999999999999999999888766665667889999999988765422 25
Q ss_pred CceEEEEEeCCCCCh-hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHhhcCCcceee
Q 002204 592 QLQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 656 (954)
Q Consensus 592 ~~~lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l 656 (954)
+++|||||+|+++.+ |+.||++||+++||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 799999999998877 99999999999999999999999998899999999999999999999864
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.94 E-value=9.9e-28 Score=233.55 Aligned_cols=138 Identities=66% Similarity=1.149 Sum_probs=123.9
Q ss_pred cceeecCceeeeeEEEEeCCCCCHHHHHHHHHHHHHHHhhCCccccCCCeeeccCCChhhHHHHHHHHHHhhhcCCCCce
Q 002204 515 NKKMFNGGRVEVWTCVNFSTRLNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQ 594 (954)
Q Consensus 515 ~~kf~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 594 (954)
+++|++++++++|+|++|+++.+.+.+++|++.|.+.|+.+||.+..+|.+.....+++++++.|+++++++ .+++
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~----~~~q 77 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRA----PGLQ 77 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHC----TTCS
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhc----CCCc
Confidence 678999999999999999755678899999999999999999999877755444456788899999888865 4799
Q ss_pred EEEEEeCCCCChhHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHhhcCCcceee
Q 002204 595 LLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 656 (954)
Q Consensus 595 lvlvilp~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l 656 (954)
|||||+|+++.+|+.||++||+++||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 78 lv~~ilp~~~~~Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 78 LLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp EEEEECCSSSSCHHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 99999999876699999999999999999999999998899999999999999999999965
No 11
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.94 E-value=1.4e-27 Score=233.27 Aligned_cols=134 Identities=25% Similarity=0.446 Sum_probs=96.3
Q ss_pred ecCccHHHHHHHHhhc--c-CCCCCHHHHHHHHHHhcCcEEEEeecC----CcceEEEecccCCCCCCcEEecCCCcccc
Q 002204 309 YEPILVTEFVQNYCRD--L-SHPLSDEVRLKVKKALKGIKVVLTHRE----YNNSHKITGISSQPMSQLMFTDDSATRMS 381 (954)
Q Consensus 309 ~~~~~l~d~i~~~~~~--~-~~~l~~~~~~~l~~~Lkgl~V~~~~~~----~~r~~~I~~i~~~~a~~~~F~~~~G~~iS 381 (954)
|+++||+||+++++.. . .+...+.++.+++++|+|++|.++|++ ++++|+|.||++.++++.+| +.+|.++|
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F-~~~g~~is 80 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-EHDGKKVT 80 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEE-ESSSCEEE
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEE-EcCCCEEE
Confidence 5789999999998821 1 223446778889999999999999954 45679999999999999999 44688899
Q ss_pred HHHHHHHHcCCccCCCCCCeEecCCCCCcccccccceEeccCccccccCCHHHHHHHHHhhcC
Q 002204 382 VIQYFRERYNIALQFTSLPALVAGSEARPIYLPMELSRIVAGQRYAKRLNERQVIALLRATCQ 444 (954)
Q Consensus 382 v~~Yf~~~Y~i~L~~p~lP~v~~g~~~k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~ 444 (954)
|+|||+++ |++|+||+||||++|++.+++|||||||.|+|||+++++|+++|+++||++||.
T Consensus 81 v~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~ 142 (143)
T 1vyn_A 81 IASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAAT 142 (143)
T ss_dssp HHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC----------------------
T ss_pred HHHHHHHc-CCCCCCCCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhc
Confidence 99999998 999999999999999988999999999999999999999999999999999986
No 12
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.93 E-value=5.6e-26 Score=221.03 Aligned_cols=134 Identities=31% Similarity=0.517 Sum_probs=116.4
Q ss_pred cceeecCceeeeeEEEEeCCC--CCHHHHHHHHHHHHHHHhhCCccccCCCeeeccCCChhhHHHHHHHHHHhhhcCCCC
Q 002204 515 NKKMFNGGRVEVWTCVNFSTR--LNRDVAFQFCQGLVDMCNSKGMVFNLRPVIPISSSNPNQIEKALVDVHNRTTQQGKQ 592 (954)
Q Consensus 515 ~~kf~~~~~i~~W~vv~~~~~--~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 592 (954)
+++|++|+++++|+|++|.+. .+++.+++|++.|.+.|+.+||.+..+|.+.....++++++..|+++.+.. .+
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~----~~ 77 (138)
T 3luc_A 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTY----AG 77 (138)
T ss_dssp -CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHC----TT
T ss_pred cCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcC----CC
Confidence 678999999999999998742 578899999999999999999999876755444556778888888776642 47
Q ss_pred ceEEEEEeCCCCCh-hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHhhcCCcc
Q 002204 593 LQLLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 653 (954)
Q Consensus 593 ~~lvlvilp~~~~~-Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n 653 (954)
++|||||+|+ +.+ |+.||++||+++||+||||+.+++.|.++||++||+||||+||||+|
T Consensus 78 ~qlv~~ilp~-~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 78 LQLVVVILPG-KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp CCEEEEEECS-SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CcEEEEEECC-CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 9999999997 456 99999999999999999999999998899999999999999999987
No 13
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.92 E-value=6.3e-26 Score=223.87 Aligned_cols=142 Identities=32% Similarity=0.504 Sum_probs=107.2
Q ss_pred cceeecCceeeeeEEEEeCCCCC-HHHHHHHHHHHHHHHhhCCccccCCCeeecc----CCChhhHHHHHHHHHHhhhcC
Q 002204 515 NKKMFNGGRVEVWTCVNFSTRLN-RDVAFQFCQGLVDMCNSKGMVFNLRPVIPIS----SSNPNQIEKALVDVHNRTTQQ 589 (954)
Q Consensus 515 ~~kf~~~~~i~~W~vv~~~~~~~-~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~----~~~~~~~~~~L~~~~~~~~~~ 589 (954)
+++|++++++++|+|++|++... .+.+++|++.|.+.|+.+||.+.+|.++... ..+++++++.|+++++++..+
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 57899999999999999975321 1378899999999999999999865543211 246788888898888765532
Q ss_pred --CCCceEEEEEeCCCCChhHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHhhcCCcceee
Q 002204 590 --GKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 656 (954)
Q Consensus 590 --~~~~~lvlvilp~~~~~Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l 656 (954)
+..++|||||+|+++..|+.||++||++.||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~~~pqlv~~ilp~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 82 HGGARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TTTCCCCEEEEEESSCCTHHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCcEEEEEECCCCccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 2368999999999874599999999999999999999999999999999999999999999999964
No 14
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.90 E-value=2.7e-24 Score=211.60 Aligned_cols=135 Identities=21% Similarity=0.330 Sum_probs=96.2
Q ss_pred cCccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecCCCccccHHHHHHHH
Q 002204 310 EPILVTEFVQNYCRDLSHPLSDEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQYFRER 389 (954)
Q Consensus 310 ~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~~ 389 (954)
+++||+|+|.++++. ...+..+.++.+.|+|+.|.+.| ++++|+|.||++++++.++|...+|..+||+|||+++
T Consensus 1 r~~tvld~~~~~~~~---~~~~~~~~~~~~~l~g~~V~t~y--~nr~yrI~~i~~~~~p~~~F~~~~g~~~T~~eYf~~~ 75 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQ---TEEHKFQEQVSKELIGLIVLTKY--NNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQ 75 (150)
T ss_dssp CCCBHHHHHHHHHHH---SCHHHHHHHHHHHHTTCEEEETT--TTEEEECCEEETTCCTTCCCCSSSSCCCCHHHHHHTT
T ss_pred CCccHHHHHHHHHcc---ccchHHHHHHHHHhCCcEEEEee--CCceEEeeecCCCCCccCeeecCCCceeeHHHHHHHH
Confidence 468999999999852 22245688999999999999999 4578999999999999999943578889999999999
Q ss_pred cCCccCCCCCCeEecCCCC---------CcccccccceEeccCccccccCCHHHHHH------HHHhhcCChHHHHHHHH
Q 002204 390 YNIALQFTSLPALVAGSEA---------RPIYLPMELSRIVAGQRYAKRLNERQVIA------LLRATCQRPREREENIR 454 (954)
Q Consensus 390 Y~i~L~~p~lP~v~~g~~~---------k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~------mik~a~~~P~~R~~~I~ 454 (954)
||++|+||+||||++|... +++|||||||.|+ +|+++|+++ |+++++.+|.+|.+.|.
T Consensus 76 Y~i~i~~~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~-------~L~d~~rs~~~~mk~l~~~t~~~P~~R~~~i~ 148 (150)
T 2xfm_A 76 YNQEITDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLT-------GLTDKMRNDFNVMKDLAVHTRLTPEQRQREVG 148 (150)
T ss_dssp CCCCCCCSSSCEEEECSSCTTCCSSCSSCCEEECGGGEEEC-------STTC----------------------------
T ss_pred cCCccCCCCCCeEEecccccccccccccceEEecHHHhccC-------CCCHHHHhhHHHHHHHHHHHccCHHHHHHHHh
Confidence 9999999999999998642 6799999999998 588888774 88999999999999887
Q ss_pred HH
Q 002204 455 MM 456 (954)
Q Consensus 455 ~~ 456 (954)
++
T Consensus 149 ~f 150 (150)
T 2xfm_A 149 RL 150 (150)
T ss_dssp --
T ss_pred cC
Confidence 53
No 15
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.89 E-value=4.5e-24 Score=202.42 Aligned_cols=116 Identities=28% Similarity=0.501 Sum_probs=96.3
Q ss_pred cCccHHHHHHHHhh----ccCCCCCHHHHHHHHHHhcCcEEEEeecC----CcceEEEecccCCCCCCcEEecCCCcccc
Q 002204 310 EPILVTEFVQNYCR----DLSHPLSDEVRLKVKKALKGIKVVLTHRE----YNNSHKITGISSQPMSQLMFTDDSATRMS 381 (954)
Q Consensus 310 ~~~~l~d~i~~~~~----~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~----~~r~~~I~~i~~~~a~~~~F~~~~G~~iS 381 (954)
++++|+|+|++++. +..++| +.++.+++++|+|++|.++|++ +++.|+|.||++.++++.+|. .+|.++|
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l-~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~-~~g~~is 78 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNL-DYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFE-HDGKKVT 78 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCG-GGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEE-SSSSEEE
T ss_pred CCccHHHHHHHHhhhcccccccCC-HHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEe-eCCcEEE
Confidence 46899999999972 123456 5567899999999999999963 456799999999999999994 3688999
Q ss_pred HHHHHHHHcCCccCCCCCCeEecCCCCCcccccccceEeccCccccc
Q 002204 382 VIQYFRERYNIALQFTSLPALVAGSEARPIYLPMELSRIVAGQRYAK 428 (954)
Q Consensus 382 v~~Yf~~~Y~i~L~~p~lP~v~~g~~~k~~ylP~Elc~i~~gQ~~~~ 428 (954)
|+|||+++ |++|+||+||||++|+..+++|||||+|.|+|||++++
T Consensus 79 V~~Yf~~~-~~~l~~p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~ 124 (124)
T 3mj0_A 79 IASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNR 124 (124)
T ss_dssp HHHHHHTT-TCCCSCSSSEEEECCBTTBCCEECGGGEEEEC------
T ss_pred HHHHHHHc-CCcccCCCCCeEeecCCCCceEecceeEEECCCCccCC
Confidence 99999997 99999999999999998899999999999999999863
No 16
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.88 E-value=4.8e-23 Score=200.89 Aligned_cols=132 Identities=17% Similarity=0.253 Sum_probs=91.5
Q ss_pred cCccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecCCCccccHHHHHHHH
Q 002204 310 EPILVTEFVQNYCRDLSHPLSDEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQYFRER 389 (954)
Q Consensus 310 ~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~~ 389 (954)
+..||+|+|.++... -....+.++++.|+|+.|.+.| +++.|+|.||+|+.++..+|...+|..+||+|||+++
T Consensus 1 r~~tvld~m~~~~~~----~~~~~~~~~~k~l~g~~V~t~y--nnk~YrI~~I~~~~~p~s~F~~~dg~~iT~~eYf~~k 74 (148)
T 3qir_A 1 RNDCVLDVMHAIYQQ----NKEHFQDECTKLLVGNIVITRY--NNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKN 74 (148)
T ss_dssp -CCCHHHHHHHHHHH----HHHHHHHHHHHHHTTCEEEETT--TCCEEECCEEETTCCTTSEEECTTSCEEEHHHHHHHH
T ss_pred CcchHHHHHHHHHhh----CcHHHHHHHHHHcCCCEEEEcc--CCcEEEEeeecCCCCcCccccCCCCCcccHHHHHHHH
Confidence 357899999988631 1145678999999999999988 4578999999999999999966678899999999999
Q ss_pred cCCccCCCCCCeEecCCCC----------CcccccccceEeccCccccccCCHHHHH------HHHHhhcCChHHHHHHH
Q 002204 390 YNIALQFTSLPALVAGSEA----------RPIYLPMELSRIVAGQRYAKRLNERQVI------ALLRATCQRPREREENI 453 (954)
Q Consensus 390 Y~i~L~~p~lP~v~~g~~~----------k~~ylP~Elc~i~~gQ~~~~kL~~~q~~------~mik~a~~~P~~R~~~I 453 (954)
||++|+||+||||+++.+. +++|||||||.++ +|+++|++ +|+.+++..|.+|.+.|
T Consensus 75 Y~i~I~~~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~lt-------gLtd~~r~d~~~mk~l~~~tr~~P~~R~~~l 147 (148)
T 3qir_A 75 YGITVKEEDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMT-------GIPEKMKKDFRAMKDLAQQINLSPKQHHSAL 147 (148)
T ss_dssp HCCCCSCTTCCEEEECCTTCCCC---CCSCCEEECGGGEECC--------------------------------------
T ss_pred cCCeecCCCCceEEeecccccCCCCCCccceeeecHHHhhhc-------CCCHHHHhhhHHHHHHHHHHCCCHHHHHHhh
Confidence 9999999999999998642 5799999999998 47777765 79999999999998876
Q ss_pred H
Q 002204 454 R 454 (954)
Q Consensus 454 ~ 454 (954)
+
T Consensus 148 ~ 148 (148)
T 3qir_A 148 E 148 (148)
T ss_dssp -
T ss_pred C
Confidence 3
No 17
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.82 E-value=1.9e-20 Score=176.81 Aligned_cols=114 Identities=21% Similarity=0.344 Sum_probs=92.6
Q ss_pred ccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCcEEecCCCccccHHHHHHHHcC
Q 002204 312 ILVTEFVQNYCRDLSHPLSDEVRLKVKKALKGIKVVLTHREYNNSHKITGISSQPMSQLMFTDDSATRMSVIQYFRERYN 391 (954)
Q Consensus 312 ~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lkgl~V~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~~Y~ 391 (954)
.||+|+|.++.+. .-....+.++.+.|+|+.|.+.| +++.|+|.+|+|+.++.++|..++|..+||+|||+++||
T Consensus 2 ~tvld~~~~~~~~---~~~~~~~~~~~k~l~G~~V~t~y--nnk~YrI~~I~~~~~p~s~F~~~dg~~~T~~eYyk~kY~ 76 (124)
T 3o7v_X 2 ETVLDFMFNFYHQ---TEEHKFQEQVSKELIGLVVLTKY--NNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYN 76 (124)
T ss_dssp CBHHHHHHHSCCC---SSHHHHHHHHHHHHTTCEEEETT--SSCEEECCEEETTCCTTCEEECTTSCEEEHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh---cccHHHHHHHHHHcCCCEEEEee--CCeEEEEeeeCCCCCccCcccCCCCCeeeHHHHHHHHhC
Confidence 5899999876521 11245788999999999999999 457899999999999999996668889999999999999
Q ss_pred CccCCCCCCeEecCCCC---------CcccccccceEeccCccccccCCHHHHHH
Q 002204 392 IALQFTSLPALVAGSEA---------RPIYLPMELSRIVAGQRYAKRLNERQVIA 437 (954)
Q Consensus 392 i~L~~p~lP~v~~g~~~---------k~~ylP~Elc~i~~gQ~~~~kL~~~q~~~ 437 (954)
++|++|+||||+++.+. +++|||||||.++ +|+++|+++
T Consensus 77 i~I~~~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~lt-------Gltd~~r~d 124 (124)
T 3o7v_X 77 QEITDLKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLT-------GLTDKMRND 124 (124)
T ss_dssp CCCCCSSCCEEEECCC----------CCEEECGGGEECC-------CCC------
T ss_pred ceecCCCcceEEEeeecccCCCCCCcceEEechhheecc-------CCChHhccC
Confidence 99999999999998542 5799999999998 699988753
No 18
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.79 E-value=5.4e-20 Score=217.91 Aligned_cols=128 Identities=27% Similarity=0.452 Sum_probs=100.0
Q ss_pred eccccceecCccHHHHHHHHhhc-cCCCCCH--HHHHHHHHHhcCcEEEEeecCC----cceEEEecccCCCCCCcEEec
Q 002204 302 DVSASSFYEPILVTEFVQNYCRD-LSHPLSD--EVRLKVKKALKGIKVVLTHREY----NNSHKITGISSQPMSQLMFTD 374 (954)
Q Consensus 302 Dvs~~~F~~~~~l~d~i~~~~~~-~~~~l~~--~~~~~l~~~Lkgl~V~~~~~~~----~r~~~I~~i~~~~a~~~~F~~ 374 (954)
+...+.|+++++|+|++.+++.+ ..+.++. ..+.++.+.||||+|+++|+++ +|.|+|.||+..++.+.+| +
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f-~ 453 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-E 453 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEE-E
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEe-c
Confidence 34556799999999999999722 2222333 3345699999999999999764 4559999999989999999 4
Q ss_pred CCCccccHHHHHHHHcCCccCCCCCCeEecCCCCCcccccccceEeccCccccccCC
Q 002204 375 DSATRMSVIQYFRERYNIALQFTSLPALVAGSEARPIYLPMELSRIVAGQRYAKRLN 431 (954)
Q Consensus 375 ~~G~~iSv~~Yf~~~Y~i~L~~p~lP~v~~g~~~k~~ylP~Elc~i~~gQ~~~~kL~ 431 (954)
.+|++|||+|||+ +||++|+||+||||++|++++++|||||||.|+|||||++||+
T Consensus 454 ~~~~~~sv~~yf~-~~~~~l~~p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 454 HDGKKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp ETTEEEEHHHHHH-HTTCCCSCTTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred cCCeEEEHHHHHH-HcCCcccCCCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 4678899999999 8999999999999999998899999999999999999999885
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.51 E-value=3.6e-08 Score=119.72 Aligned_cols=84 Identities=24% Similarity=0.350 Sum_probs=70.1
Q ss_pred HHHHHhcCcEEEEeecCCc-ceEEEecccCCCCCCcEEecCCCccccHHHHHHHHcCCccCCCCCCeEecCCC-------
Q 002204 336 KVKKALKGIKVVLTHREYN-NSHKITGISSQPMSQLMFTDDSATRMSVIQYFRERYNIALQFTSLPALVAGSE------- 407 (954)
Q Consensus 336 ~l~~~Lkgl~V~~~~~~~~-r~~~I~~i~~~~a~~~~F~~~~G~~iSv~~Yf~~~Y~i~L~~p~lP~v~~g~~------- 407 (954)
.+.+.|+|.-|.+.| |+ |.|+|.+|+++.++.++|..+ +..+|+.|||+++||++|++++||+|.+...
T Consensus 151 ~~~~~l~g~vV~t~y--nn~r~Y~i~~id~d~~P~S~F~~~-~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~~~r 227 (756)
T 2qvw_A 151 TLSASLHGRMVATPE--ISWSLYVVLGIDSTQTSLSYFTRA-NESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDHQ 227 (756)
T ss_dssp -CTTTSTTCEEEETT--TTTEEEEEEEEEEEEETTSEEEET-TEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTTTCC
T ss_pred hhHHHhCCCEEecCC--CCceEEEEEEecCCCCCCCcCCCC-CCCCCHHHHHHHHcCcccccCCCCeEEEEecccccccc
Confidence 456789999999988 45 679999999999999999433 3679999999999999999999999987531
Q ss_pred -----------CCcccccccceEecc
Q 002204 408 -----------ARPIYLPMELSRIVA 422 (954)
Q Consensus 408 -----------~k~~ylP~Elc~i~~ 422 (954)
.+.++||||+|.+.+
T Consensus 228 ~~~~~~~~~~~~~~v~L~PELC~vt~ 253 (756)
T 2qvw_A 228 IPAPGSWDDLAPKLRFLPPELCLLLP 253 (756)
T ss_dssp CCSTTC-CCSCSSCEEECTTTCEECC
T ss_pred cccccccccCCccceeeCHHHheeec
Confidence 134799999999974
No 20
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=74.31 E-value=22 Score=34.24 Aligned_cols=96 Identities=24% Similarity=0.266 Sum_probs=55.7
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCccc--ceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHH
Q 002204 671 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVA--KYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAF 748 (954)
Q Consensus 671 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~--~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 748 (954)
|.-|=++|+||-.. .-.|+++|--.| .... .|. .+.+.. +-.+|+ .+|.|.|..-
T Consensus 17 P~RIE~fDiSh~~G----~~~VasmVVf~~-g~p~K~~YR-rf~I~~---~g~DDy--------------a~M~Evl~RR 73 (159)
T 2nrr_A 17 PYRIEGIDISHLQG----KYTVASLVVFED-GFPKKGDYR-RYKIEQ---DHPDDY--------------ESIRTVVKRR 73 (159)
T ss_dssp CCEEEEEEEECC-------CCEEEEEEEET-TEECGGGCE-EEEC--------CHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeC-CccChhhCc-eeecCC---CCCCHH--------------HHHHHHHHHH
Confidence 56888999999753 457888888766 3332 232 122221 222444 5566777555
Q ss_pred HHhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeee
Q 002204 749 RRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 805 (954)
Q Consensus 749 ~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KR 805 (954)
++.- .+|+-|+| || +.||+. +.++++.+++- .+.+|-+.|+
T Consensus 74 ~~r~-~~PDLilI--DG-GkgQl~--------aA~~vl~elg~----~i~v~glAK~ 114 (159)
T 2nrr_A 74 YSKH-PLPNLLFV--DG-GIGQVN--------AAIEALKEIGK----DCPVVGLAKK 114 (159)
T ss_dssp HTTS-CCCSEEEE--SS-CHHHHH--------HHHHHHHHTTC----CCCEEEEC--
T ss_pred hccC-CCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CccEEEEEcC
Confidence 4432 68999988 88 778875 44566666632 2457778886
No 21
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=55.46 E-value=56 Score=33.27 Aligned_cols=96 Identities=24% Similarity=0.277 Sum_probs=59.1
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCccc--ceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHH
Q 002204 671 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVA--KYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAF 748 (954)
Q Consensus 671 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~--~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 748 (954)
|.-|=++|++|-. +.-.|+++|--.| .... .|.- +.+.. +-.+|+ .+|.|.|..-
T Consensus 22 p~rIE~fDiSh~~----G~~~V~smVvf~~-g~p~k~~YRr-f~i~~---~g~DDy--------------a~m~Evl~RR 78 (220)
T 2nrt_A 22 PYRIEGIDISHLQ----GKYTVASLVVFED-GFPKKGDYRR-YKIEQ---DHPDDY--------------ESIRTVVKRR 78 (220)
T ss_dssp CCEEEEEEEEEET----TTEEEEEEEEEET-TEECGGGCEE-EEEEC---SSCCHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccC----CccceEEEEEEeC-CccChhhCce-eeCCC---CCCCHH--------------HHHHHHHHHH
Confidence 5678899999975 3467888888666 3322 2321 22222 112443 5556666555
Q ss_pred HHhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHcccCCCCCCEEEEEEeee
Q 002204 749 RRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 805 (954)
Q Consensus 749 ~~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~~~~~~~~~P~it~Ivv~KR 805 (954)
+..- .+|+-|+| || +.||+. +.++++.+++- .+.+|-+.|+
T Consensus 79 ~~r~-~~PDLili--DG-GkgQl~--------~a~~vl~~lg~----~i~v~glaK~ 119 (220)
T 2nrt_A 79 YSKH-PLPNLLFV--DG-GIGQVN--------AAIEALKEIGK----DCPVVGLAKK 119 (220)
T ss_dssp HTTS-CCCSEEEE--SS-SHHHHH--------HHHHHHHHTTC----CCCEEEECTT
T ss_pred hccC-CCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCeEEEEECC
Confidence 4432 68999988 88 778875 44566666632 2457778786
No 22
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=40.84 E-value=8.3 Score=37.00 Aligned_cols=63 Identities=13% Similarity=0.223 Sum_probs=42.5
Q ss_pred HHHHHHHHHhc-CCCCceEEEEecCCChhhHHHHHHHHHHH----HHHHHHcccC----CCCCCEEEEEEee
Q 002204 742 RELLIAFRRST-NFKPHRIIFYRDGVGERQFSQVLLHEMNA----IRQACASLEE----GYAPPVTFVVVQK 804 (954)
Q Consensus 742 ~~~L~~f~~~~-~~~P~~IIiyRDGVsEgq~~~V~~~E~~~----I~~a~~~~~~----~~~P~it~Ivv~K 804 (954)
.+.|..|+++- +.+|...+||=|+++|.+.......|++. +++++..++. =|.-.+|+||..+
T Consensus 45 ~~eL~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R 116 (160)
T 3qbz_A 45 PKELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 116 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESS
T ss_pred HHHHHHHHHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecC
Confidence 35667777653 46887778888999998666555556554 6677777753 2556788777544
No 23
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=38.53 E-value=1.8e+02 Score=29.69 Aligned_cols=98 Identities=24% Similarity=0.286 Sum_probs=54.9
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCccc--ceEEEEEeccCchhhhhhhhhhcCCCCCccchhhHHHHHHHHH
Q 002204 671 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVA--KYRGLVSAQAHHEEIIQDLYKSIQDPQRGFVHGGMIRELLIAF 748 (954)
Q Consensus 671 ~tmiiG~DV~Hp~~~~~~~pSiaavVaS~d~~~~~--~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f 748 (954)
|.-|=++|+||-. +.-.|+++|--.| .... .|. .+.+.. .+-.+|+ .+|.|.|..-
T Consensus 14 p~rIE~fDiSh~~----G~~~V~smVvf~~-g~p~k~~YR-~f~i~~--~~g~DDy--------------a~m~Evl~RR 71 (226)
T 3c65_A 14 PRRIEAFDNSNIY----GADPVSALVVFLD-GKPAKKEYR-KYKVKT--VAGPNDY--------------ETMREVVRRR 71 (226)
T ss_dssp CSEEEEEEEEESS----SSSCEEEEEEEET-TEECGGGCE-EEECCC--CCTTCHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccC----CcCceEEEEEEeC-CccChhhCc-eeecCC--CCCCcHH--------------HHHHHHHHHH
Confidence 6688999999975 3457888888766 3332 232 122221 1111343 3444544333
Q ss_pred H----HhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHH-HcccCCCCCCEEEEEEeee
Q 002204 749 R----RSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQAC-ASLEEGYAPPVTFVVVQKR 805 (954)
Q Consensus 749 ~----~~~~~~P~~IIiyRDGVsEgq~~~V~~~E~~~I~~a~-~~~~~~~~P~it~Ivv~KR 805 (954)
+ +....+|+-|+| || +.||+. +.++++ .+++- .+.+|-+.|+
T Consensus 72 ~~r~~~e~~~~PDLili--DG-GkgQl~--------~a~~vl~~~lg~----~i~v~glaK~ 118 (226)
T 3c65_A 72 YTRVLKEGLPLPDLIII--DG-GKGHLS--------AVRDVLENELGL----DVPLAGLAKD 118 (226)
T ss_dssp HHHHHHHTCCCCSEEEE--SS-CHHHHH--------HHHHHHHHTSCC----CCCEEEC---
T ss_pred HhhhhcccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHhcCC----CceEEEEEcC
Confidence 2 223369999998 98 778875 455677 46632 2457777774
No 24
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=23.59 E-value=2e+02 Score=30.29 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=40.1
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh
Q 002204 590 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV 647 (954)
Q Consensus 590 ~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~ 647 (954)
+..|.|.++..-++..+ |-..|...+.+.||.+..+.... .....-+.+...++|.
T Consensus 30 g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~i~~lN~ 87 (281)
T 2c2x_A 30 GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPA--DISTATLNETIDELNA 87 (281)
T ss_dssp TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHhcC
Confidence 34588888888776655 99999989999999998886532 1123345567778874
No 25
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=22.83 E-value=1.9e+02 Score=29.43 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=31.2
Q ss_pred CCCCChhHHHHHHHHhhhcccccCCCccccchhHHHHHHHHHHhh
Q 002204 868 ENRFTADGLQVLTNNLCYTYARCTRSVSVVPPAYYAYLAAFRARY 912 (954)
Q Consensus 868 e~~~~~d~Lq~lTy~LC~~y~r~t~sVsiPaP~yYA~~~a~Rar~ 912 (954)
-.+++.|+--+++-.+|- +--++|.|+..||++|.+.+.
T Consensus 184 Gh~i~l~~A~~~v~~~~~------~~yRlPEP~R~Ad~~s~~~~~ 222 (225)
T 2w36_A 184 GHLMDVESSKRLIKAFTL------PGRRIPEPTRLAHIYTQRLKK 222 (225)
T ss_dssp CSSCCHHHHHHHHHHHCC------TTCSSCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhhh
Confidence 457899998889988762 224799999999999988765
No 26
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=21.91 E-value=2.3e+02 Score=29.86 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhcCCCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh--hcCCc
Q 002204 577 KALVDVHNRTTQQGKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV--KVGGR 652 (954)
Q Consensus 577 ~~L~~~~~~~~~~~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~--KlGG~ 652 (954)
+.+++..++...++..|.|.++..-++..+ |-..|...+.+.||.+..+.... .....-+.+...++|. +.-|+
T Consensus 18 ~~~~~~v~~l~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~v~GI 95 (285)
T 3p2o_A 18 EELKEKNQFLKSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNE--NITQNELLALINTLNHDDSVHGI 95 (285)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCCCCEE
Confidence 333333333332334788888887776655 99999999999999988776542 1123345667788885 57777
Q ss_pred ceee
Q 002204 653 NTVL 656 (954)
Q Consensus 653 n~~l 656 (954)
+..+
T Consensus 96 lvql 99 (285)
T 3p2o_A 96 LVQL 99 (285)
T ss_dssp EECS
T ss_pred EecC
Confidence 6543
No 27
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=21.71 E-value=2e+02 Score=30.61 Aligned_cols=62 Identities=24% Similarity=0.217 Sum_probs=43.1
Q ss_pred CCCceEEEEEeCCCCCh--hHHHHHHhhhccCceeeeeecccccccchhhHHHHHHHHHh--hcCCcc
Q 002204 590 GKQLQLLIIILPDVSGS--YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINV--KVGGRN 653 (954)
Q Consensus 590 ~~~~~lvlvilp~~~~~--Y~~IK~~~~~~~GI~TQci~~~~~~k~~~q~~~Ni~lKiN~--KlGG~n 653 (954)
+..|.|.++++-++... |-+.|...+.+.||.+..+....- ....-+.+...++|. ..-|+-
T Consensus 51 g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~--~se~ell~~I~~LN~D~~V~GIl 116 (303)
T 4b4u_A 51 GRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQE--TTTEQLLAEIEKLNANPDVHGIL 116 (303)
T ss_dssp SCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCcc--CCHHHHHHHHHHhcCCCCccEEE
Confidence 35688888888776655 999999999999999988865421 123345566777774 344543
Done!