Query 002205
Match_columns 953
No_of_seqs 359 out of 1514
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 18:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4427 E3 ubiquitin protein l 100.0 1E-155 3E-160 1302.8 56.6 880 18-953 2-1002(1096)
2 KOG0942 E3 ubiquitin protein l 100.0 1E-133 3E-138 1156.8 61.4 881 17-953 1-931 (1001)
3 KOG0941 E3 ubiquitin protein l 100.0 4.5E-72 9.7E-77 646.5 27.9 402 518-953 362-782 (850)
4 COG5021 HUL4 Ubiquitin-protein 100.0 3.8E-65 8.2E-70 612.5 28.8 282 665-953 514-797 (872)
5 cd00078 HECTc HECT domain; C-t 100.0 8E-61 1.7E-65 542.1 27.6 280 667-953 2-284 (352)
6 KOG0939 E3 ubiquitin-protein l 100.0 3.8E-59 8.3E-64 529.3 24.6 311 627-953 331-644 (720)
7 smart00119 HECTc Domain Homolo 100.0 1.4E-56 2.9E-61 502.6 26.0 260 687-953 3-266 (336)
8 KOG0170 E3 ubiquitin protein l 100.0 1.1E-51 2.5E-56 452.0 23.0 341 600-953 133-545 (621)
9 PF00632 HECT: HECT-domain (ub 100.0 6E-43 1.3E-47 391.5 18.9 233 721-953 1-245 (317)
10 KOG0940 Ubiquitin protein liga 100.0 7.6E-39 1.7E-43 354.7 8.0 277 664-953 15-292 (358)
11 KOG0943 Predicted ubiquitin-pr 99.9 7.6E-25 1.6E-29 254.3 18.7 198 754-952 2739-2946(3015)
12 PF00612 IQ: IQ calmodulin-bin 97.6 5.1E-05 1.1E-09 49.7 3.2 21 46-66 1-21 (21)
13 smart00015 IQ Short calmodulin 97.1 0.00041 9E-09 48.0 2.5 22 45-66 2-23 (26)
14 KOG0377 Protein serine/threoni 77.5 2.5 5.4E-05 48.3 4.1 23 46-68 17-39 (631)
15 PTZ00014 myosin-A; Provisional 73.5 5.6 0.00012 50.5 6.2 33 37-69 768-800 (821)
16 KOG1419 Voltage-gated K+ chann 66.2 5.2 0.00011 47.3 3.4 34 28-61 322-355 (654)
17 PTZ00014 myosin-A; Provisional 64.3 9.9 0.00022 48.4 5.7 27 39-65 793-819 (821)
18 KOG0164 Myosin class I heavy c 54.4 21 0.00045 43.6 5.6 28 43-70 693-720 (1001)
19 PF08763 Ca_chan_IQ: Voltage g 49.1 17 0.00038 27.1 2.5 21 48-68 11-31 (35)
20 KOG0163 Myosin class VI heavy 47.5 15 0.00032 44.9 3.0 28 43-70 810-837 (1259)
21 KOG0160 Myosin class V heavy c 40.8 43 0.00094 42.5 5.8 36 28-63 678-713 (862)
22 KOG0160 Myosin class V heavy c 35.6 52 0.0011 41.9 5.3 30 45-74 717-746 (862)
23 PF03378 CAS_CSE1: CAS/CSE pro 31.7 9.4E+02 0.02 28.6 15.6 148 186-362 49-213 (435)
24 PF08513 LisH: LisH; InterPro 22.1 1.1E+02 0.0023 21.4 2.8 21 203-223 5-25 (27)
No 1
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-155 Score=1302.76 Aligned_cols=880 Identities=29% Similarity=0.485 Sum_probs=735.6
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccCCchhh
Q 002205 18 RSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNR---QCFGPQSA 94 (953)
Q Consensus 18 ~s~~e~~r~~lL~~~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~~~~~~~~~~~~---~~~~~~~~ 94 (953)
++..+++|++||+|+++|||+|+.+|||++||++||++||||++||+++.+|+++||.++..+....++ ....|.-.
T Consensus 2 ~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~~~erv~~~~l~ 81 (1096)
T KOG4427|consen 2 FSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTKVLERVARPFLP 81 (1096)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHhhhHHH
Confidence 344457899999999999999999999999999999999999999999999999999999987743222 22233456
Q ss_pred hhhhheEEEeccccccHHHHHHHHHHHHHHhhhcCCccccccccccccchhh-HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 002205 95 FFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRAL-VDFRVKKFAFACIQAVHQNRKELKDQL 173 (953)
Q Consensus 95 ~lr~llFf~~~~~~~D~~rL~~lC~~ll~s~~~~~~~~~~~~~~~~~~~~~~-~~~qiKkll~lC~~~L~~~~~~~~~~~ 173 (953)
++|.+++.++.++ .|.+||+++||+|+.+|+++++.+.+||++++++|+.. |+.|||++++.|++.|.+++++...+.
T Consensus 82 var~ll~q~r~ie-~~~e~~~~iCr~il~smds~n~~~~sfvsl~l~ke~sk~w~~qik~ils~c~~lL~eln~Er~ad~ 160 (1096)
T KOG4427|consen 82 VARSLLVQHRKIE-AREERLEQICRKILLSMDSENDQKYSFVSLALGKEDSKTWICQIKRILSLCSFLLTELNPERIADS 160 (1096)
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcCCCCcceeeeeehhcccchHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8899999888875 44899999999999999999999999999999999876 799999999999999999777633222
Q ss_pred cCCCCCCCCchHHHHHHHHHhhcCCchh------------------hHHHHHHHHhcchHHHHHHHHHhcCCCccccccc
Q 002205 174 FVTPEESNTPPTLLLEAVVFLIDSRLPW------------------TCKVVSYLLERNVFTLLRELIVTGKESMEIHSSY 235 (953)
Q Consensus 174 ~~~~~~~~~~~~~~L~~l~~lt~~~~~W------------------~~~i~~yL~q~g~y~~Lr~ll~~~~~~~~~~~~~ 235 (953)
....++|+++++|||++. | |++||||++|+|||+.+|.+|.++..+.++....
T Consensus 161 --------~~~alll~~livfTdpks-Wkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~l~~ 231 (1096)
T KOG4427|consen 161 --------IVNALLLHILIVFTDPKS-WKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPRLVI 231 (1096)
T ss_pred --------HHHHHHHHeeeEEeCCcc-eeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcceee
Confidence 255899999999999999 9 4789999999999999999999999877763333
Q ss_pred CCcchHHHHHHhhcccccCCCCccCCCCCcc------chhhhhcccchhhhhhhh----HHHHHhhcCCchhhHHHHHHH
Q 002205 236 GRISSLERVLTLIIPHIGQKPCICPNIDPRW------SFFSQILTIPFLWHLFPY----IKEVFATGRTSQHYIHQMALC 305 (953)
Q Consensus 236 ~~~~~l~~ll~l~~~~~~~~~~~~~~~~~~~------~f~~~IlsiP~l~~~~p~----~~~~~~~~~L~~~~~~~~~~~ 305 (953)
. ++.+.+.+ +.+|...+++ .|.++|||||+|..|+|. ....+.++.+..+.++ +
T Consensus 232 ~---Tl~a~~sl---------~~rpvk~~nfsd~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~----~ 295 (1096)
T KOG4427|consen 232 T---TLAATFSL---------RLRPVKQPNFSDNLVEEFVSLILTVPALVCHLPSALPQALEHLSSLMLLDKILN----I 295 (1096)
T ss_pred e---ehhhhhhh---------ccccccCCchHHHHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHHHHHHHHH----H
Confidence 2 22222222 2345555554 599999999999888774 4777777888888876 5
Q ss_pred HhhhcccCCccccCCcchHHHHHHHHHHHhhhhccCCCCcchhhhhHHHHHHHHHhhCCCcccc--CccCC---------
Q 002205 306 VQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSS--RESSM--------- 374 (953)
Q Consensus 306 l~~~~~~~~~~~s~~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~v~v~~~lL~~l~~~~~~--~~~~~--------- 374 (953)
+.+......-+.+.++|+.+|+|||++++++ .++.+...+..-+++..+++-|.+|-.++.+ ++++.
T Consensus 296 l~d~~~~ee~~tsme~~~~l~llgNiv~la~--is~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~wH~vlg~ 373 (1096)
T KOG4427|consen 296 LRDMENSEEQSTSMEGPSVLWLLGNIVHLAT--ISETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDWHPVLGW 373 (1096)
T ss_pred HHhhHhHHHhhcCCcccHhHHHHhhhheeee--cCcccccccccccchhhhHHHHHHHHHHHhhcccccceeeeehhhcc
Confidence 5544444333557888999999999999997 3333333333334778888888888554433 23321
Q ss_pred CCCCCccCCCCCccchhhHhHHHHHHHHhhHHHHHHHHHHHhhhccc--------------------------------C
Q 002205 375 VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHL--------------------------------L 422 (953)
Q Consensus 375 ~~~ddd~~~~~~~~~~~~~~l~~ql~~~~~~~~l~~lv~~l~~~v~~--------------------------------~ 422 (953)
.+...|.+.++.|. .++.|+.-+|+. ++++.+|.++.. +
T Consensus 374 ~s~~~ek~~n~~i~-----~v~~q~~mlw~~----~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~lrk 444 (1096)
T KOG4427|consen 374 TSNETEKGNNVKIS-----LVEKQLPMLWQW----RLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRALRK 444 (1096)
T ss_pred ccCCCCCccchhHH-----HHHHHHHHHhhh----hHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHHHH
Confidence 44555556666665 799999999997 444444433211 0
Q ss_pred CC---C-------------CCCCCCchhhhHHHHHHHHHHHhhhhchh--hHHHHHhhhhhhhHHHHHHHHHhhcccCCC
Q 002205 423 RG---P-------------HDEGPGDKEVAAVGAACAFLHVAFNTLPL--ECIMTVLAYRTELVQLLWHYMKRCHEIRKW 484 (953)
Q Consensus 423 ~~---~-------------~~~~~~~~~~~~v~~~c~~~~~~l~~lp~--~~iL~~Laf~~~ll~~LW~~i~~~~~~~~~ 484 (953)
++ . ++--.+++++..++.+|..|+++++|+.+ ..++++|+|.+.+++.+|.+|+..+++.+-
T Consensus 445 ~~~~~~~l~~v~ss~~~~~~~k~~s~~~v~lv~~iC~~y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~e~G~~~G~ 524 (1096)
T KOG4427|consen 445 SCVMGPVLGPVPSSNMLSFCPKWNSSAEVLLVENICTAYDASLNTLWQMRLPILTGLCYLDNLLVNLWVNILELGPSPGP 524 (1096)
T ss_pred hcccCCccCCCccchhhhccccccCcccceehhhhhhHHHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHHHhCCCCCC
Confidence 00 0 01113678899999999999999998875 579999999999999999999998887662
Q ss_pred C--CC----------C---CCCCC---CCCcchhhhhhHHHHhHHhhhccchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 002205 485 P--FL----------P---YLSGD---APGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHL 546 (953)
Q Consensus 485 ~--sl----------~---~~~~~---~~~~ll~l~lFc~l~s~~L~ildD~Ef~~~~~pf~l~el~~l~~~Lk~~~~~l 546 (953)
. +- + .+.++ +....++|.|||+||.|+++|+||+|||++|.||+++|+.+++.+||.++|++
T Consensus 525 ~~gs~~~~~~~k~~~ev~~~l~s~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~ 604 (1096)
T KOG4427|consen 525 QPGSGQVNESTKDVLEVETLLGSPTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKG 604 (1096)
T ss_pred CCCccccchhHHHHHhHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHH
Confidence 1 10 1 01111 12366789999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCccCCCCCCCCCCcHHHHhhhhhHHHHHHHHHHhHhhcCCccCCCCCCcCCCCc-hhhhhhhhccccc
Q 002205 547 LWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVN-DFFISQATIDGTR 625 (953)
Q Consensus 547 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~L~~~~~r~~~~p~~~f~~~~~~-~~~~~~~~~~~~~ 625 (953)
||.+....+ + ....-++.+++++|..||+|||||+|+|+++|+++++. ..|....+....+
T Consensus 605 i~~g~v~ea-------------k-----~~t~~lF~S~h~~l~vLYeRDcRr~Fta~d~WL~pevkPs~f~~e~ek~~~~ 666 (1096)
T KOG4427|consen 605 IWDGTVPEA-------------K-----QLTTGLFDSAHRLLHVLYERDCRRPFTASDHWLIPEVKPSAFAAELEKVLPT 666 (1096)
T ss_pred HHcccchhh-------------h-----hHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcCCCCChhHHHHHHHhhccc
Confidence 996433211 1 11122789999999999999999999999999998875 3444444445566
Q ss_pred hhHhhhcCCcccchhhHHHHHHHHHHHHHhhcCC----CCCcce-eeEEecCCcHHHHHHHHHccCChhhccCceEEEEe
Q 002205 626 ANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGS----HGVFTR-SRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFV 700 (953)
Q Consensus 626 ~~~il~~~Pfl~pf~~rv~~f~~~~~~~~~~~~~----~~~~~~-~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~ 700 (953)
+..++..+|+++|+++||.+||+++..++...+. .....+ ..|+|||++|+||+|+||++.+...||+.++|+|+
T Consensus 667 a~lll~~mpHviP~edRv~lFR~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFV 746 (1096)
T KOG4427|consen 667 ADLLLTKMPHVIPHEDRVLLFREFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFV 746 (1096)
T ss_pred ceeEeccCCcccChHHHHHHHHHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEe
Confidence 7788999999999999999999999888754331 122223 58999999999999999999998899999999999
Q ss_pred eccCcccccccCCCccHHHHHHHHHHhhccccCCccccC-CccceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccc
Q 002205 701 NELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS-DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDI 779 (953)
Q Consensus 701 ~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~-~~~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l 779 (953)
||+|++|||||.||++|||++++.|..|||+++||.+|+ |+.+||+|.++ ..++|+++|+|+|||+|||+|+|+++|+
T Consensus 747 NeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~~LyPSPts~-~~en~lqlfeFvGrmlGKAvYEGIvvDv 825 (1096)
T KOG4427|consen 747 NEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDRRLYPSPTSY-HHENHLQLFEFVGRMLGKAVYEGIVVDV 825 (1096)
T ss_pred cccCCcccccCccchHHHHHHHHHHHHhcccccccccCCCCceecCCchhh-hhhchhHHHHHHHHHHHHHHhcceEEec
Confidence 999999999999999999999999999999999999998 89999999997 7899999999999999999999999999
Q ss_pred cCcHHHHHhhcCCCC--CCCCccccCHHHHHHHHhhhhccCCccccceeEEEEecccCcceeeecCCCCCccccChhhHH
Q 002205 780 PFATFFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVI 857 (953)
Q Consensus 780 ~f~~~f~k~Llg~~~--~l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~ 857 (953)
||+++|+.+++|... .+|+|+++|||+||||.++|+|+||+.||+|||++++|..|+..++||+|||+.|+||++||.
T Consensus 826 ~fa~vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi 905 (1096)
T KOG4427|consen 826 PFASVFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKI 905 (1096)
T ss_pred ccHHHHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchH
Confidence 999999999999886 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHH
Q 002205 858 TFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFW 937 (953)
Q Consensus 858 eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FW 937 (953)
+|||+|++|++|++|++|++||.+||.++|.|+||++|+|.|||+||+|+..+||++|||+||+|.|||+.+|++|+|||
T Consensus 906 ~YIH~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlW 985 (1096)
T KOG4427|consen 906 QYIHAMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLW 985 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHh-cCCHHHHhhhcC
Q 002205 938 EVLK-SFSLENQKKFLK 953 (953)
Q Consensus 938 evl~-~~s~eer~~fLk 953 (953)
+|++ +|++|||+.|||
T Consensus 986 dIl~~dFt~eERklfLK 1002 (1096)
T KOG4427|consen 986 DILAGDFTPEERKLFLK 1002 (1096)
T ss_pred HHHhccCChHHHHHHHH
Confidence 9997 599999999997
No 2
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-133 Score=1156.77 Aligned_cols=881 Identities=37% Similarity=0.542 Sum_probs=687.7
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCchhhhh
Q 002205 17 GRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFF 96 (953)
Q Consensus 17 G~s~~e~~r~~lL~~~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~~~~~~~~~~~~~~~~~~~~~l 96 (953)
|+|++ .+|+.+|.+|++||.+|+++|||+++|+++|++||||++|++++...|++||.....+.++ .....++
T Consensus 1 g~~~~-~er~~~l~r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~fd~~~~~~~~~------e~~~~~~ 73 (1001)
T KOG0942|consen 1 GASSL-NERDNLLRRAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREEFDAVSTRSRGG------EELTKLA 73 (1001)
T ss_pred CCcch-hhHHHHHHHHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc------hhHHHHH
Confidence 78888 4899999999999999999999999999999999999999999999999999988766522 2245689
Q ss_pred hhheEEEeccccccHHHHHHHHHHHHHHhhhcCCccccccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcccccCC
Q 002205 97 RQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVT 176 (953)
Q Consensus 97 r~llFf~~~~~~~D~~rL~~lC~~ll~s~~~~~~~~~~~~~~~~~~~~~~~~~qiKkll~lC~~~L~~~~~~~~~~~~~~ 176 (953)
|+|+|||... +|.+||+|+|+.|++-.. ..+.. + ..+|..|.|+++..|++ +.|++.+.+...
T Consensus 74 ~~L~~Fy~~~--~D~~rli~~~~nl~~~~~---~~i~~------s--~~~~~~~~k~l~~~c~~-~l~n~~~d~l~~--- 136 (1001)
T KOG0942|consen 74 RLLVFFYETN--KDSERLIMVLQNLLKQKT---RLIEF------S--KRTRLTQLKLLLRKCQR-LLQNRNDDTLFQ--- 136 (1001)
T ss_pred HHHHHHhhcc--cccHHHHHHHHHHHHHHH---Hhhhh------h--ccchHHHHHHHHHHHHH-HHHhhhhhhHHH---
Confidence 9999999766 799999999998886222 22222 1 26789999999999998 666776543311
Q ss_pred CCCCCCchHHHHHHHHHhhc---------CCchhhHHHHHHHHhcchHHHHHHHHHhcCCCcccccccCCcchHHHHHHh
Q 002205 177 PEESNTPPTLLLEAVVFLID---------SRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTL 247 (953)
Q Consensus 177 ~~~~~~~~~~~L~~l~~lt~---------~~~~W~~~i~~yL~q~g~y~~Lr~ll~~~~~~~~~~~~~~~~~~l~~ll~l 247 (953)
++| .++++.+++..+ ...+|.+.|++|+..++||..+|.+++.+.++....+..+..+.++.++.+
T Consensus 137 ----~~p-~~ll~~~~~~~~~~~~~~d~~~~~~~v~~i~ay~~k~~y~~~lr~l~~~~~~s~~~~s~~~n~~~~e~ll~l 211 (1001)
T KOG0942|consen 137 ----AIP-RRLLESFTSHSSLVRLLKDLGLFNQEVHLILAYLGKRTYYTSLRALLNSKKLSLLGRSFETNVLPLESLLSL 211 (1001)
T ss_pred ----HHH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhccccchhhHHHHhhhccccccccccCCCCChHHHHHHH
Confidence 224 566776666433 255799999999999999999999999988877777788888999999999
Q ss_pred hcccccCCCCccCCCCCccchhhhhcccchhhhhhhhHHHHHhhcCCchhhHHHHHHHHhhhcccCCccccCCcchHHHH
Q 002205 248 IIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACL 327 (953)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~f~~~IlsiP~l~~~~p~~~~~~~~~~L~~~~~~~~~~~l~~~~~~~~~~~s~~~p~~~~l 327 (953)
+..+....++.|+.++.+++|..+|++.|.++..++.. ..+.+ +. ..++..++.+.++
T Consensus 212 vl~~~~~~k~~c~~~d~~~sf~~~~la~d~~~~~~~~~--------~~~~~-----------~~---~~~~~~~~~~~~~ 269 (1001)
T KOG0942|consen 212 VLLPLRLAKTACTNGDLNFSFTILILAKDHISPIFCPF--------FLPLF-----------AA---MKTSDPLELWEVA 269 (1001)
T ss_pred hccccchhccccccccccccchHHHHhcccchhhcccc--------chhHH-----------hh---hhccccchHHHHH
Confidence 99988888889999999999999999999998877521 11111 11 1334566677888
Q ss_pred HHHHHHHhhhh---ccCCCCcchhhhhH-HHHHHHHHhhCCCccccCcc-----CCCCCCCccCCCCCccchhhHhHHHH
Q 002205 328 LGNILETAGVA---LSQPDCSFEMGVDL-AAITTFLLKALPPIKSSRES-----SMVSDDDMTAGDEVMEPVINRDLEKQ 398 (953)
Q Consensus 328 L~Nl~~l~~~~---l~~~~~~~~~~~~~-v~v~~~lL~~l~~~~~~~~~-----~~~~~ddd~~~~~~~~~~~~~~l~~q 398 (953)
+++.++.+... ++++.+.....-.. +...+.+.+.||+.....++ +.+++++..+.+..++.. .+.-..|
T Consensus 270 ~~~al~s~~~i~s~~~~~~l~~l~q~~~~~~y~~~l~~~L~pv~~~s~~~r~~~~~dd~~es~d~~~~v~n~-l~~~~~~ 348 (1001)
T KOG0942|consen 270 LESALESAGSIKSGVSQNVLVLLHQSYLLLQYFNFLAEFLPPVSHESAIMRHLSVKDDDEESDDEDKSVPNH-LKPYCEQ 348 (1001)
T ss_pred HHHHHhhhcchhhcccchhhhhhhhhhHHHHHHHHHHHHcCCcCCCCcchhhccccchhhhccccchhhhhh-chHHHHh
Confidence 88777554421 12222222221122 22344444444522211111 111111111112211111 1112233
Q ss_pred HHHHhhHHHHHHHHH-HHhhhcccCCCCCCCCCCchhhhHHHHHHHHHHHh----hhhchhhHHHHHhhhhhhhHHHHHH
Q 002205 399 ITSAIDSRFLLQLTN-VLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVA----FNTLPLECIMTVLAYRTELVQLLWH 473 (953)
Q Consensus 399 l~~~~~~~~l~~lv~-~l~~~v~~~~~~~~~~~~~~~~~~v~~~c~~~~~~----l~~lp~~~iL~~Laf~~~ll~~LW~ 473 (953)
.......+....+.+ ...++|...-+ .+....+...+++.+|.+||++ .+.+|..++++.+||.++++..+|.
T Consensus 349 ~~~~~~~r~~~cl~~~~~~~qv~~iis--~~~~~~~~~~~i~~~~~~~~sl~~~~~~~~p~~rll~~laf~~~~~~~~~f 426 (1001)
T KOG0942|consen 349 MSASNSSRRAACLYANLEKRQVDEIIS--STDYDKAFEDLIANLNTFCHSLYAQIAKLVPLGRLLYILAFSPKLNAELWF 426 (1001)
T ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHH--HhcchhhHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHhhhHHHHHHHHH
Confidence 332233333323322 22222211000 0001233344566666555544 3688999999999999999999995
Q ss_pred H--HHhhcccCC-CCCCC----CCCCCC------CCcchhhhhhHHHHhHHhhhccchhhhccCCCCCHHHHH-HHHHHH
Q 002205 474 Y--MKRCHEIRK-WPFLP----YLSGDA------PGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIR-HLIVIL 539 (953)
Q Consensus 474 ~--i~~~~~~~~-~~sl~----~~~~~~------~~~ll~l~lFc~l~s~~L~ildD~Ef~~~~~pf~l~el~-~l~~~L 539 (953)
. +.++..+.. +.+++ ....++ .+.++.+.+||.+|+|+|.+++|.|||+..++.....+. .++.++
T Consensus 427 ~~~~~~~s~~~~~~s~vp~L~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~L~s~~d~Ef~e~~~~~~~~~~m~e~i~~l 506 (1001)
T KOG0942|consen 427 TNCLARRSESMADGSSVPQLIFISFGVTPEFLLDDRIIPLLLLFSTMFRRMLYSGHDKEFMEDPKTLWKPVMMPELILLL 506 (1001)
T ss_pred HHHHHHHHhhccccccchhHHhhccCCchhhccccchhhHHHHHHHHHHhhhhcccHHHHhcCccccchhhHHHHHHHHH
Confidence 4 888776654 33443 222222 234445678999999999999999999988776666333 677888
Q ss_pred HHHHHHHhhcCCCCCCCC-CCccCCCCCCCCCCc--HHHHhhhhhHHHHHHHHHHhHhhcCCccCCC---CCCcCCCCch
Q 002205 540 REALWHLLWLNPTSHPNV-GKSVSSPPPANKMLP--AEAIQHRVSTVASEVLSQLQDWNNRREFVPP---SDFHADGVND 613 (953)
Q Consensus 540 k~~~~~llw~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lL~~L~~~~~r~~~~p~---~~f~~~~~~~ 613 (953)
|.+....+|..+...++. .++++.+. .++.+ .+.+.+....+..+++.++++||.|..|+|+ ...-++..++
T Consensus 507 k~l~d~~l~~~~la~~~t~~~~~g~~~--~r~~~~~~~~~~n~~~~v~~e~l~~~~~rd~r~~f~~~~e~~dl~sd~~~e 584 (1001)
T KOG0942|consen 507 KYLKDILLWLVPLAFPNTREKVVGITE--SRRMPLRQRRRWNGRLQVVRELLTELSERDNRKEFCPSKERPDLKSDDENE 584 (1001)
T ss_pred HHHHHHHhcccccccccccccccCcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccchHH
Confidence 888888899776665544 23333332 23333 2223344678999999999999999999997 2455555565
Q ss_pred hhhhhhhccccchhHhhhcCCcccchhhHHHHHHHHHHHHHhhcCCCCCccee---eEEecCCcHHHHHHHHHccCChhh
Q 002205 614 FFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRS---RFRIRRDHILEDAYSQMSTMSEED 690 (953)
Q Consensus 614 ~~~~~~~~~~~~~~~il~~~Pfl~pf~~rv~~f~~~~~~~~~~~~~~~~~~~~---~i~VrR~~i~eda~~~l~~~~~~~ 690 (953)
.+.........|+..||+++||++||+.||++|+.++..+|++.+..++|+.. .++|||++|+||||+++++.+..+
T Consensus 585 ~~~~l~~~lr~R~l~IL~e~PF~vPF~~RVklfq~lla~dKq~~~~~~~F~~g~s~~~tIRRd~iyeDAfd~f~p~~e~d 664 (1001)
T KOG0942|consen 585 LFNPLPSFLRFRALCILKEIPFFVPFEERVKLFQRLLALDKQRHGGDGPFGMGFSPSATIRRDHIYEDAFDAFSPKGEPD 664 (1001)
T ss_pred hhcchHhhhhhHHHHHHHcCCeeechHHHHHHHHHHHHHHHHhhcCCCCccCCCCccEEEehhhhHHHHHHhcCccCCcc
Confidence 55555555667899999999999999999999999999999999888888766 899999999999999999999999
Q ss_pred ccCceEEEEeeccCcccccccCCCccHHHHHHHHHHhhccccCCccccCCccceeCCCCCCChhH-HHHHHHHHhHHHHH
Q 002205 691 LRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQ-HLQFFHFLGILLAK 769 (953)
Q Consensus 691 lk~~l~V~F~~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~~~l~pnp~s~~~~~~-~l~~f~flG~llG~ 769 (953)
+|..++|+|+||+|++||||||||+||||+++++++.|||++|+|++|.++.+||||++.+..+. ++++|+|+|+++||
T Consensus 665 lk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~~lLYPNp~~~~l~~~~~lkhy~FLGrllGK 744 (1001)
T KOG0942|consen 665 LKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETEDHLLYPNPTAAMLLDVDCLKHYYFLGRLLGK 744 (1001)
T ss_pred cccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeecccceecCCCCchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876654 89999999999999
Q ss_pred HHhcCCcccccCcHHHHHhhcCCCC--CCCCccccCHHHHHHHHhhhhccC-CccccceeEEEEecccCcceeeecCCCC
Q 002205 770 AMFEGILVDIPFATFFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEA-DISELELYFVILNNEYGEQTEEELLPGG 846 (953)
Q Consensus 770 Ai~~~~~l~l~f~~~f~k~Llg~~~--~l~DL~~~Dp~l~~sL~~l~~~~~-dv~~l~L~F~~~~~~~g~~~~~eL~p~G 846 (953)
|||||+++|+|||.||++||+|.+. +++||.++||++|++|.+||+|+| |+++|+|+|+|..+++|+.+++||+|||
T Consensus 745 ~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~eL~L~FtVv~~e~G~~~vVeLkPnG 824 (1001)
T KOG0942|consen 745 CIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISELQLDFTVVNSELGERQVVELKPNG 824 (1001)
T ss_pred HHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhhccceEEEeccccccceeEEeccCC
Confidence 9999999999999999999999988 899999999999999999999998 7899999999999999999999999999
Q ss_pred CccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCC
Q 002205 847 KNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGY 926 (953)
Q Consensus 847 ~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy 926 (953)
++|+||++|+.+|||+|+||+||.+|++|+.||++||..||+++|++||++.|||.||+|.+++||++|||+||+|.|||
T Consensus 825 s~i~VTneNvi~YihLVsnY~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy 904 (1001)
T KOG0942|consen 825 SKIRVTNENVIEYIHLVSNYKLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGY 904 (1001)
T ss_pred ccceeechhhhhhhHHhhhhHHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 927 HSEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 927 ~~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
+++||+|.+||||+++|+.|+||+|||
T Consensus 905 ~~~hp~Iv~FWeVl~~F~~edKr~fLK 931 (1001)
T KOG0942|consen 905 SPDHPTIVMFWEVLEEFSDEDKRKFLK 931 (1001)
T ss_pred CCCCCchhHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999999997
No 3
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-72 Score=646.54 Aligned_cols=402 Identities=32% Similarity=0.539 Sum_probs=345.2
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccCCCCCCCCCCcHHHHhhhhhHHHHHHHHHHhHhhcC
Q 002205 518 EEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNR 597 (953)
Q Consensus 518 ~Ef~~~~~pf~l~el~~l~~~Lk~~~~~llw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~L~~~~~r 597 (953)
++||.+- ..+....++++++..+-.++-.. .. .. .....++++..++..||..|++
T Consensus 362 ~~~~~~~---~~k~~~~~v~~f~~~V~~~l~~~-----~~-------------~~---~e~~~i~~~l~~~~lly~vN~~ 417 (850)
T KOG0941|consen 362 VEYWNQL---SPKYFRKLVSMFKEAVTEILKFS-----KE-------------LA---EENKGIRSALKLLELLYKVNCR 417 (850)
T ss_pred HHHHHHh---chhhcchhhhchhhHHHHhhhcc-----ch-------------hh---hhccchhhHHHHHHHHHHHhcc
Confidence 7777764 66777888888888877765210 00 00 0112456788899999999999
Q ss_pred CccCCCCCCcCCCCchhhhhhhhccc--c--chhHhhhcCCcccchhhHHHHHHHHHHH----HHhhc------CCCC--
Q 002205 598 REFVPPSDFHADGVNDFFISQATIDG--T--RANEILKQAPFLVPFTSRAKIFQSQLAS----VRQRH------GSHG-- 661 (953)
Q Consensus 598 ~~~~p~~~f~~~~~~~~~~~~~~~~~--~--~~~~il~~~Pfl~pf~~rv~~f~~~~~~----~~~~~------~~~~-- 661 (953)
++.+|...||++.+++.+.-+.+... . ...+.+++|||+++-.+|+.+++...+. .++.. ....
T Consensus 418 ~~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~~fsfc~ypFIL~~~aK~~lL~yD~rlrM~~~~~~a~~~s~~~~~~~~ 497 (850)
T KOG0941|consen 418 KGLIPYEEFYNEELNDRIDMKEDYVHWRTKQMNCFSFCNYPFILNAVAKIELLQYDARLRMESERRKAFLSSLFQGLQLL 497 (850)
T ss_pred CCCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcccceeecCCeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999988876654443321 1 1146789999999999999998864321 11110 1111
Q ss_pred CcceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcccccccCCCccHHHHHHHHHHhhccccCCccccCC-
Q 002205 662 VFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD- 740 (953)
Q Consensus 662 ~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~- 740 (953)
+-+...++|||++|++|++++|+..+..|+||+|+|+|.| |+|+|+|||+||||.++.+|+|+|+||||..+.+
T Consensus 498 ~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~g-----E~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s 572 (850)
T KOG0941|consen 498 VSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVG-----EEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEES 572 (850)
T ss_pred CCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECC-----CcccccCchHHHHHHHHHHHHcCccccCeeccccc
Confidence 2245589999999999999999999999999999999999 7899999999999999999999999999998765
Q ss_pred ccceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCCCCCCCCccccCHHHHHHHHhhhhccC-C
Q 002205 741 HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEA-D 819 (953)
Q Consensus 741 ~~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~~-d 819 (953)
+.+|++|... ++ -.+|+++|++||+||||..++|+|||.++||||++.+++++||.++.|.+|+||+.|++|+| |
T Consensus 573 ~~~WF~~~~~---~~-~~~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd 648 (850)
T KOG0941|consen 573 SLLWFNPSPF---EE-EKQYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDD 648 (850)
T ss_pred ceeeecCCCC---Cc-cceeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccc
Confidence 4678777653 12 23799999999999999999999999999999999999999999999999999999999998 7
Q ss_pred ccc-cceeEEEEecccCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHH
Q 002205 820 ISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEH 898 (953)
Q Consensus 820 v~~-l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~ 898 (953)
++| ++++|++..+.+|...++||+|||.+|+||++||++||.+|++|.+|++|++|++||++||++||+.+.+++|.|+
T Consensus 649 ~ed~f~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~pe 728 (850)
T KOG0941|consen 649 VEDVFDLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPE 728 (850)
T ss_pred hhhheeeEEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHH
Confidence 754 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 899 ELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 899 EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
||+.+|||+++ +||+.|+++|+|+|||+++||+|+|||++++.||.++|+|||+
T Consensus 729 El~~li~G~~~-~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~ 782 (850)
T KOG0941|consen 729 ELEKLICGSED-YDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQ 782 (850)
T ss_pred HHHHHHhCCCc-cCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheE
Confidence 99999999985 9999999999999999999999999999999999999999985
No 4
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-65 Score=612.54 Aligned_cols=282 Identities=37% Similarity=0.709 Sum_probs=271.5
Q ss_pred eeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcccccccCCCccHHHHHHHHHHhhccccCCccccCC--cc
Q 002205 665 RSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HL 742 (953)
Q Consensus 665 ~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~--~~ 742 (953)
..+|+|||+++++|+++++...++.++|+.|+|+|.| |+|||+||++||||.++++++|+|++++|..+.+ ..
T Consensus 514 ~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~-----EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~~~ 588 (872)
T COG5021 514 YLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVG-----EEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYT 588 (872)
T ss_pred ceEEEEecccchHHHHHHHHHhchhhhcceEEEEecC-----cccccCCccchHHHHHHhHHhcCCcccceeeecccccc
Confidence 3489999999999999999999988888889999999 7999999999999999999999999999997654 46
Q ss_pred ceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCCCCCCCCccccCHHHHHHHHhhhhccCCccc
Q 002205 743 LYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE 822 (953)
Q Consensus 743 l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~ 822 (953)
++|||.+. ++++|+++|+|+|++||+||||++.+|++||.+|||+|+|++++++|+.++||++|+||.+|++++.|...
T Consensus 589 ~~~n~~s~-~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~~ 667 (872)
T COG5021 589 LPINPLSS-INPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDETI 667 (872)
T ss_pred cCcCcccc-CCHHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcce
Confidence 77899887 68999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred cceeEEEEecccCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHH
Q 002205 823 LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQL 902 (953)
Q Consensus 823 l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~ 902 (953)
++++|++..+.+|+..+|||||||++|+||++||.+||++|++|+++++|++|++||..||.+|||++|+.||+++||+.
T Consensus 668 l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~ 747 (872)
T COG5021 668 LDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELEL 747 (872)
T ss_pred eeeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 903 LISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 903 li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
||||.+++||++|||+||.|. ||++++|+|.|||++|++|+.|+|++|||
T Consensus 748 LI~G~~e~iDidd~K~~T~Y~-GY~~~s~~I~wFWeii~~f~~eer~klLQ 797 (872)
T COG5021 748 LIGGIPEDIDIDDWKSNTAYH-GYTEDSPIIVWFWEIISEFDFEERAKLLQ 797 (872)
T ss_pred HHCCCCccccHHHHhhccccc-ccccCCcHHHHHHHHHHHhCHHHHhhhhe
Confidence 999998779999999999996 89999999999999999999999999997
No 5
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=8e-61 Score=542.08 Aligned_cols=280 Identities=46% Similarity=0.785 Sum_probs=268.7
Q ss_pred eEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcccccccCCCccHHHHHHHHHHhhccccCCccccCC--ccce
Q 002205 667 RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLY 744 (953)
Q Consensus 667 ~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~--~~l~ 744 (953)
+++|||++|++|+++++...++.+++++|+|+|+| |+|+|+|||+||||+++++|+++|++|||..+++ +.+|
T Consensus 2 ~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~g-----E~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~ 76 (352)
T cd00078 2 KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVG-----EEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLY 76 (352)
T ss_pred eEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECC-----CCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEE
Confidence 68999999999999999999888999999999998 7899999999999999999999999999999887 7899
Q ss_pred eCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCCCCCCCCccccCHHHHHHHHhhhhccCCccccc
Q 002205 745 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELE 824 (953)
Q Consensus 745 pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~ 824 (953)
|||.+. ..++++++|+++|+++|+||++|.+++++||++|||+|+|.+++++||+++||++|++|.+|+++++++++++
T Consensus 77 ~~p~~~-~~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~l~ 155 (352)
T cd00078 77 PNPSSF-ADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLE 155 (352)
T ss_pred eCCCcc-cchhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhc
Confidence 999985 3457889999999999999999999999999999999999999999999999999999999999888788999
Q ss_pred eeEEEEecc-cCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHH
Q 002205 825 LYFVILNNE-YGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLL 903 (953)
Q Consensus 825 L~F~~~~~~-~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~l 903 (953)
|+|++..+. .|...++||+|||++++||.+|+++||+++++|+++++++.|++||++||++|+|.++|++|+|+||+.+
T Consensus 156 l~F~~~~~~~~~~~~~veL~~~G~~~~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~l 235 (352)
T cd00078 156 LTFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235 (352)
T ss_pred ceeEEEEeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHH
Confidence 999998776 8888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 904 ISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 904 i~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
+||.+ +||+++|++||+|.|||+.++++|+|||+|+++||+|||++|||
T Consensus 236 vcG~~-~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~ 284 (352)
T cd00078 236 ICGSE-DIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQ 284 (352)
T ss_pred hCCCC-CCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHHhhe
Confidence 99996 59999999999999999999999999999999999999999996
No 6
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=3.8e-59 Score=529.31 Aligned_cols=311 Identities=35% Similarity=0.654 Sum_probs=291.7
Q ss_pred hHhhhcCCcccchhhHHHHHHHHHHHHHhhcCCCCCcceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcc
Q 002205 627 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVE 706 (953)
Q Consensus 627 ~~il~~~Pfl~pf~~rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~ 706 (953)
..++.++|-+++|+.|.++|++.++...... ....+.|+|+.+++|+++++...+++++|.++.|+|.|
T Consensus 331 f~ll~~~~~ll~F~~Kr~yf~r~L~~~~~~~------~~~~v~v~R~~v~~~S~~~~~~~s~~e~~~rl~I~f~g----- 399 (720)
T KOG0939|consen 331 FSLLLKNPMLLDFDNKRKYFKRELRKEHASS------EKLAVLVRRALVLEDSFRALLYKSPEELKTRLEVTFQG----- 399 (720)
T ss_pred hhhheecCcceecccHHHHHHHHHHHhhccC------CcceEEEeHHHHHHHHHHHHHhCCHHHHhcceEEEEec-----
Confidence 5788899999999999999999886554431 12378999999999999999999999999999999999
Q ss_pred cccccCCCccHHHHHHHHHHhhccccCCccccCCc--cceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHH
Q 002205 707 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 784 (953)
Q Consensus 707 E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~~--~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~ 784 (953)
|+|+|+||++||||..+++++|||.|++|...++. .+.|||+|+ ..++||.+|+|.||++|||||+|.+++..|.+.
T Consensus 400 EEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~d~tt~~pn~~s~-~np~hLs~fkf~GriigKal~d~ql~~c~ftrs 478 (720)
T KOG0939|consen 400 EEGSDAGGVTREWLQLLSREIFNPRYALFTTVGSDQTTFHPNPNSY-VNPEHLSYFKFVGRIIGKALFDGQLLECYFTRS 478 (720)
T ss_pred ccccccchHHHHHHHHHHHHHcCCCcceEEEcCCCceEEeeCCccc-CChhhhhHHHhhHHHHHHHHhcchhhhheeeHH
Confidence 78999999999999999999999999999986655 667999987 688999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCccccCHHHHHHHHhhhhccCCccc-cceeEEEEecccCcceeeecCCCCCccccChhhHHHHHHHH
Q 002205 785 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLV 863 (953)
Q Consensus 785 f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~-l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~ 863 (953)
|||.++|.+++..|+++.||++|++|.+|++ +|+++ ++++|+...+.+|...++||+|||++|.||++||.+||+++
T Consensus 479 fyk~ilG~~v~~~d~es~DP~y~k~l~~il~--ndis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~~yv~lv 556 (720)
T KOG0939|consen 479 FYKHILGLPVTYHDMESADPEYYKSLVWILK--NDISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQEYVQLV 556 (720)
T ss_pred HHhhccCCceeeeehhhcChHHhhceeehhc--CCcccceeEEEEEeeccccccceeecccCCCceeeccccHHHHHHHH
Confidence 9999999999999999999999999999986 55543 89999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcC
Q 002205 864 SNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSF 943 (953)
Q Consensus 864 ~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~ 943 (953)
++|||..+|++|++||.+||+++||...+++|+..||+.||||-++ ||++||++||+|. ||++.+++|+|||++|++|
T Consensus 557 ~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpe-idvdd~k~nt~y~-~~~~~~~~i~wFWrav~sf 634 (720)
T KOG0939|consen 557 TQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPE-IDVDDLKANTEYL-GYTKASSVIQWFWRAVRSF 634 (720)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCc-ccHHHHHhhhhhh-cccccchHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999985 9999999999997 8999999999999999999
Q ss_pred CHHHHhhhcC
Q 002205 944 SLENQKKFLK 953 (953)
Q Consensus 944 s~eer~~fLk 953 (953)
+.|||.||||
T Consensus 635 ~~eeraklLq 644 (720)
T KOG0939|consen 635 DQEERAKLLQ 644 (720)
T ss_pred cHHHHHhhHe
Confidence 9999999986
No 7
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=1.4e-56 Score=502.57 Aligned_cols=260 Identities=42% Similarity=0.765 Sum_probs=242.2
Q ss_pred ChhhccCc-eEEEEeeccCcccccccCCCccHHHHHHHHHHhhccccCCccccCCc-cceeCCCCCCChhHHHHHHHHHh
Q 002205 687 SEEDLRGA-IRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH-LLYPNPGSGMIHEQHLQFFHFLG 764 (953)
Q Consensus 687 ~~~~lk~~-l~V~F~~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~~-~l~pnp~s~~~~~~~l~~f~flG 764 (953)
+..++|++ |+|+|+| |+|+|+|||+||||+++++++++|++|||..+++. .+||+|.+....++++++|+++|
T Consensus 3 ~~~~~~~~~l~V~F~g-----E~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~~~~~~~p~~~~~~~~~l~~f~~~G 77 (336)
T smart00119 3 SDEDLKKSVLEIEFEG-----EEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDYLLYPNPRAFFANPEHLAYFRFIG 77 (336)
T ss_pred ChHHhCCCeEEEEECC-----CCCccCCchHHHHHHHHHHHHhCcccCCceEcCCCCeEEeCCCccccchHHHHHHHHHH
Confidence 34688998 9999998 78999999999999999999999999999988764 89999987655577899999999
Q ss_pred HHHHHHHhcCCcccccCcHHHHHhhcCCCCCCCCccccCHHHHHHHHhhh-hccCCccccceeEEEE-ecccCcceeeec
Q 002205 765 ILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK-HYEADISELELYFVIL-NNEYGEQTEEEL 842 (953)
Q Consensus 765 ~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~-~~~~dv~~l~L~F~~~-~~~~g~~~~~eL 842 (953)
+++|+||+++.+++++||++|||+|+|.+++++||+++||++|++|++|+ +++ ..++++++|++. ...+|+..++||
T Consensus 78 ~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~-~~~~~~l~F~~~~~~~~g~~~~~eL 156 (336)
T smart00119 78 RVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNND-TSEELDLTFSIVLTSEFGQVKVVEL 156 (336)
T ss_pred HHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCC-CcccccceEEEEeeecCCCcceEec
Confidence 99999999999999999999999999999999999999999999999994 433 335689999854 345788899999
Q ss_pred CCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhccee
Q 002205 843 LPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNY 922 (953)
Q Consensus 843 ~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y 922 (953)
+|||++++||.+|+++||+++++|+++++++.|++||++||++|+|.+++++|+|+||+.++||.++ ||+++|++||+|
T Consensus 157 ~~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-i~~~~l~~~~~~ 235 (336)
T smart00119 157 KPGGSNIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPE-IDVDDLKSNTEY 235 (336)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCC-CCHHHHhhheEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 923 VGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 923 ~gGy~~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
.|||++++++|+|||+|+++||+|||++|||
T Consensus 236 ~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~ 266 (336)
T smart00119 236 KGGYSENSQTIKWFWEVVESFTNEERRKLLQ 266 (336)
T ss_pred cCCCCCCCHHHHHHHHHHHHCCHHHHHHhhe
Confidence 9999999999999999999999999999996
No 8
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-51 Score=451.97 Aligned_cols=341 Identities=25% Similarity=0.431 Sum_probs=294.0
Q ss_pred cCCCCCCcCCCCchhhhhhh--------hccccchhHhhhcCCcccchhhHHHHHHHHH-------HHHHhhcCC-----
Q 002205 600 FVPPSDFHADGVNDFFISQA--------TIDGTRANEILKQAPFLVPFTSRAKIFQSQL-------ASVRQRHGS----- 659 (953)
Q Consensus 600 ~~p~~~f~~~~~~~~~~~~~--------~~~~~~~~~il~~~Pfl~pf~~rv~~f~~~~-------~~~~~~~~~----- 659 (953)
.+|.+.|.+..+......|. ...+.|...+.+.|||+|||++|..+|+... +..++..++
T Consensus 133 ~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~~~~s 212 (621)
T KOG0170|consen 133 IVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGSKDGS 212 (621)
T ss_pred CCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCCCCCC
Confidence 46777777766655443322 2356789999999999999999999999632 111111110
Q ss_pred -------CCCcceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcccccccCCCccHHHHHHHHHHhhcccc
Q 002205 660 -------HGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQY 732 (953)
Q Consensus 660 -------~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~ 732 (953)
.+...|.+++|.|++|++.|.+.|..++ .-|..|+|+|.+|+|+ |-||+-||++++++++..++.
T Consensus 213 ~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~yg--ss~~vLEIEY~~EvGT------GLGPTLEFYtlVSk~fq~~sL 284 (621)
T KOG0170|consen 213 NDEALQQLGRLTRKKLRISRKTILASALKVMEKYG--SSKAVLEIEYEEEVGT------GLGPTLEFYTLVSKEFQRASL 284 (621)
T ss_pred chHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhc--CCcceEEEEecccccc------CCCcceeeHHHHHHHHhhccc
Confidence 1345677999999999999999999986 3578999999997765 779999999999999999999
Q ss_pred CCcccc----------C-------CccceeCCCCCC----ChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcC
Q 002205 733 GLFKET----------S-------DHLLYPNPGSGM----IHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQ 791 (953)
Q Consensus 733 glF~~~----------~-------~~~l~pnp~s~~----~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg 791 (953)
|||+.+ . ..++||.|-... .++..+++|.++|+++||||++|+++|+||+++|||.++|
T Consensus 285 gmWR~~s~s~~~~k~~~~t~~v~~~sgLFp~P~~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~ 364 (621)
T KOG0170|consen 285 GMWRCNSVSYRSGKPQENTKDVYITSGLFPRPWPPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILG 364 (621)
T ss_pred cccccCceeeccCCCCCCcchhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhc
Confidence 999964 1 147999886532 1345788999999999999999999999999999999999
Q ss_pred CCCCCCCccccCHHHHHHHHhhhh------c----cC--------------CccccceeEEEEecccCcceeeecCCCCC
Q 002205 792 KYNYLNDLPSLDPELYRHLIFLKH------Y----EA--------------DISELELYFVILNNEYGEQTEEELLPGGK 847 (953)
Q Consensus 792 ~~~~l~DL~~~Dp~l~~sL~~l~~------~----~~--------------dv~~l~L~F~~~~~~~g~~~~~eL~p~G~ 847 (953)
++++..|+..+||+++++|..|.. + -| .||||+|+||+++. .++||+|||.
T Consensus 365 q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~-----p~ieL~p~g~ 439 (621)
T KOG0170|consen 365 QELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGF-----PDIELIPGGA 439 (621)
T ss_pred CCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCC-----CCeeeccCCC
Confidence 999999999999999999998842 1 11 25899999999853 4799999999
Q ss_pred ccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCC
Q 002205 848 NIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYH 927 (953)
Q Consensus 848 ~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~ 927 (953)
+++||..|.+|||+.++++.++++|.+|++||+.||.+|+|.+-|++|+|+||..|+||..++|+.+.|..|++.+|||+
T Consensus 440 ~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT 519 (621)
T KOG0170|consen 440 NKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYT 519 (621)
T ss_pred CCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 928 SEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 928 ~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
.++|+|+.+.+|+..|+.||||.|||
T Consensus 520 ~~Sp~i~~li~ils~f~~~qQR~FLQ 545 (621)
T KOG0170|consen 520 MDSPIIHDLISILSAFDKEQQRLFLQ 545 (621)
T ss_pred CCCcHHHHHHHHhhhhchHHHHHHHH
Confidence 99999999999999999999999986
No 9
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=6e-43 Score=391.46 Aligned_cols=233 Identities=40% Similarity=0.708 Sum_probs=200.8
Q ss_pred HHHHHHhhccccCCccccCC-ccceeCCCCC------CChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhc-CC
Q 002205 721 ENITRAAFDVQYGLFKETSD-HLLYPNPGSG------MIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLK-QK 792 (953)
Q Consensus 721 ~~l~~e~f~p~~glF~~~~~-~~l~pnp~s~------~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Ll-g~ 792 (953)
+++++|+|+|++|||..+++ +.+||||... ...+.++++|+++|+++|+||++|.+++++||++|||+|+ |.
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~~k~l~~g~ 80 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNNGLFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAFWKYLLSGE 80 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTTCEEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHHHHHHT-T-
T ss_pred CHHHHHhcCccCCCceEcCCCCEEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHHHHHHhcCC
Confidence 57999999999999976655 4577887621 1234678999999999999999999999999999999999 99
Q ss_pred CCCCCCccccCHHHHHHHHhhhhccC---CccccceeEEEEecc-cCcceeeecCCCCCccccChhhHHHHHHHHHHHHH
Q 002205 793 YNYLNDLPSLDPELYRHLIFLKHYEA---DISELELYFVILNNE-YGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRL 868 (953)
Q Consensus 793 ~~~l~DL~~~Dp~l~~sL~~l~~~~~---dv~~l~L~F~~~~~~-~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l 868 (953)
+++++|++++||+++++|++|++++. ++++++++|+++.+. .|...++||+|||+++.||.+|+.+||+++++|++
T Consensus 81 ~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l 160 (317)
T PF00632_consen 81 PLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRL 160 (317)
T ss_dssp ---HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHH
T ss_pred CCccccchhcCchhhcchhhheeccccccceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhc
Confidence 99999999999999999999997753 367899999987543 45667899999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHH
Q 002205 869 NFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQ 948 (953)
Q Consensus 869 ~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer 948 (953)
+++++.|++||++||.+|+|..++++|+|+||+.++||.++.||+++|+++|+|++||++++++|+|||+||++||++||
T Consensus 161 ~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~ 240 (317)
T PF00632_consen 161 NESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEER 240 (317)
T ss_dssp TTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHH
T ss_pred ccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHh
Confidence 99999999999999999999999999999999999999874499999999999999999999999999999999999999
Q ss_pred hhhcC
Q 002205 949 KKFLK 953 (953)
Q Consensus 949 ~~fLk 953 (953)
++|||
T Consensus 241 ~~fL~ 245 (317)
T PF00632_consen 241 RKFLR 245 (317)
T ss_dssp HHHHH
T ss_pred heeEE
Confidence 99985
No 10
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-39 Score=354.67 Aligned_cols=277 Identities=32% Similarity=0.607 Sum_probs=262.8
Q ss_pred ceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcccccccCCCccHHHHHHHHHHhhccccCCccccCCc-c
Q 002205 664 TRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH-L 742 (953)
Q Consensus 664 ~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~~-~ 742 (953)
...+++|+|++++||+|+++-..++.++|+.+.+.|.+ |+|.|.||+.||||..+++++|+|-+|+|..+.+. .
T Consensus 15 ~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~-----ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~~t 89 (358)
T KOG0940|consen 15 QQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKG-----EEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYT 89 (358)
T ss_pred ceeEEEechhhhHHHHHHHHhCCCchhhhhcceeeccc-----ccccccCCCCcceeeeeccccCCcceeeeeecccccc
Confidence 34589999999999999999999999999999999999 78999999999999999999999999999998884 8
Q ss_pred ceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCCCCCCCCccccCHHHHHHHHhhhhccCCccc
Q 002205 743 LYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE 822 (953)
Q Consensus 743 l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~ 822 (953)
++.+|.++ ..++|+.+|.|+|+.+|+|++++..++-- -.+|||.+++++.+++|.+.+|++.|+++.+++++ |+..
T Consensus 90 lq~~P~sg-~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~en--~~~~ 165 (358)
T KOG0940|consen 90 LWLNPRSG-VNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIREN--DPTN 165 (358)
T ss_pred cccCCccC-CCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchhhcCccccccccccccC--Cccc
Confidence 99999998 78899999999999999999999999987 99999999999999999999999999999999864 4444
Q ss_pred cceeEEEEecccCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHH
Q 002205 823 LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQL 902 (953)
Q Consensus 823 l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~ 902 (953)
+++|.++...+|+....+|+|||.++.||.+|+++||.++.+ ++..++..|.++|.+||..++|..++++|.+.|++.
T Consensus 166 -~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~ 243 (358)
T KOG0940|consen 166 -DLTFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELEL 243 (358)
T ss_pred -chhhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHH
Confidence 999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 903 LISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 903 li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
++||..+ +|++||+++|.|. ||+.+|++|.|||+.+.++++++|.+.++
T Consensus 244 ~~~~~~~-~~~~d~~~~t~~~-~~~~~~~~i~wf~~~v~~~~~~~r~r~l~ 292 (358)
T KOG0940|consen 244 ALSGDPE-IDVNDWKQNTEYR-GYSETDRQIDWFWNNVDEMDNEERIRLLQ 292 (358)
T ss_pred HhcCCcc-cchhHHhhhcccc-cccCCccccHHHHHhhhhcChHHHHhhhh
Confidence 9999985 9999999999998 89999999999999999999999998764
No 11
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.6e-25 Score=254.32 Aligned_cols=198 Identities=21% Similarity=0.372 Sum_probs=166.5
Q ss_pred hHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCCCCCCCCccccCHHHHHHHHhhhhcc------CCccccceeE
Q 002205 754 EQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYE------ADISELELYF 827 (953)
Q Consensus 754 ~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~------~dv~~l~L~F 827 (953)
+..+..|+-+|+|+|.|+..|-+.++.|++.++|.++|.++.+.|+..+||.+|.+|..|-... .|...+++.|
T Consensus 2739 ~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhpsSd~DadFS~md~aa 2818 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHPSSDADADFSAMDLAA 2818 (3015)
T ss_pred HHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCCcccccchhhHHHHhh
Confidence 4568889999999999999999999999999999999999999999999999999999985321 2233345555
Q ss_pred EEEecccCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCC
Q 002205 828 VILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGS 907 (953)
Q Consensus 828 ~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~ 907 (953)
..+--.-....+++|+|||.+|+||.+|+.|||..|+.++|-..-...++|+++|+-+|||.+.|.=++++++..+|||.
T Consensus 2819 ~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~ 2898 (3015)
T KOG0943|consen 2819 AGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAEDFRLIICGC 2898 (3015)
T ss_pred ccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhHheeeeecc
Confidence 44210001245899999999999999999999999999999866677899999999999999999999999999999998
Q ss_pred CCCccHHHHhhcceeCCCCCCCC----HHHHHHHHHHhcCCHHHHhhhc
Q 002205 908 LDSLDFDDLRQNTNYVGGYHSEH----YVIEMFWEVLKSFSLENQKKFL 952 (953)
Q Consensus 908 ~~~id~~dL~~~t~y~gGy~~~~----~~I~~FWevl~~~s~eer~~fL 952 (953)
.+ +++.-|..+|-|...-.++. +.-+|||+|++.||..||..+.
T Consensus 2899 ee-VniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLV 2946 (3015)
T KOG0943|consen 2899 EE-VNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLV 2946 (3015)
T ss_pred cc-eehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEE
Confidence 75 99999999997753222222 4678999999999999998753
No 12
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.65 E-value=5.1e-05 Score=49.74 Aligned_cols=21 Identities=38% Similarity=0.351 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 002205 46 NHAAIKIQKCFRGKKAMEIEH 66 (953)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~ 66 (953)
.+||++||++||||++|++.+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 369999999999999999864
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.07 E-value=0.00041 Score=47.97 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=19.7
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 002205 45 QNHAAIKIQKCFRGKKAMEIEH 66 (953)
Q Consensus 45 r~~aAi~IQ~~~Rg~~~r~~~~ 66 (953)
.+++|++||++||||++|++.+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999874
No 14
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=77.46 E-value=2.5 Score=48.32 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 002205 46 NHAAIKIQKCFRGKKAMEIEHSK 68 (953)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~~~ 68 (953)
-+||+.||+|.|||.||..+|+.
T Consensus 17 ikaAilIQkWYRr~~ARle~rrr 39 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARRR 39 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999888764
No 15
>PTZ00014 myosin-A; Provisional
Probab=73.53 E-value=5.6 Score=50.55 Aligned_cols=33 Identities=9% Similarity=-0.054 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002205 37 NRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (953)
Q Consensus 37 e~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (953)
.+|+...+-...|..|||+||||++|++.++..
T Consensus 768 ~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~ 800 (821)
T PTZ00014 768 IQREKLAAWEPLVSVLEALILKIKKKRKVRKNI 800 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444567899999999999999877763
No 16
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=66.19 E-value=5.2 Score=47.29 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002205 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKA 61 (953)
Q Consensus 28 lL~~~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~ 61 (953)
|=-++||+-.+.+-.|||..||-.||++||-|.+
T Consensus 322 fALKVQeq~RQKHf~rrr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 322 FALKVQEQHRQKHFNRRRNPAASLIQCAWRYYAA 355 (654)
T ss_pred hhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence 4457888888889999999999999999998875
No 17
>PTZ00014 myosin-A; Provisional
Probab=64.29 E-value=9.9 Score=48.36 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 002205 39 RLYLRRQNHAAIKIQKCFRGKKAMEIE 65 (953)
Q Consensus 39 R~~~rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (953)
|..-+++..|++.||++||||+++++.
T Consensus 793 r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 793 KRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455577999999999999999764
No 18
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=54.39 E-value=21 Score=43.64 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=22.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVR 70 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R 70 (953)
.+...-|..||+.||||++|.+.++-.+
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka 720 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKA 720 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999998876543
No 19
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=49.08 E-value=17 Score=27.05 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 002205 48 AAIKIQKCFRGKKAMEIEHSK 68 (953)
Q Consensus 48 aAi~IQ~~~Rg~~~r~~~~~~ 68 (953)
||..||-+||.|..|+.....
T Consensus 11 At~lI~dyfr~~K~rk~~~~~ 31 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKEQEQQ 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999875443
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=47.45 E-value=15 Score=44.93 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVR 70 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R 70 (953)
.=|.++.+++|++.|||++|++.+..+-
T Consensus 810 ~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 810 IYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 3466789999999999999999887763
No 21
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=40.81 E-value=43 Score=42.53 Aligned_cols=36 Identities=25% Similarity=0.146 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 002205 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAME 63 (953)
Q Consensus 28 lL~~~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~ 63 (953)
++++.=.-+.-|..--+..++++.||+++||+++|+
T Consensus 678 ~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~ 713 (862)
T KOG0160|consen 678 LIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR 713 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 445444455555554455566666666666666665
No 22
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=35.63 E-value=52 Score=41.89 Aligned_cols=30 Identities=23% Similarity=0.118 Sum_probs=23.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002205 45 QNHAAIKIQKCFRGKKAMEIEHSKVREQFF 74 (953)
Q Consensus 45 r~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd 74 (953)
+..|||.||+.||++..|++.+..+...+-
T Consensus 717 ~~~aai~~q~~~r~~~~r~~y~~~~~~~~~ 746 (862)
T KOG0160|consen 717 REAAAIGIQKECRSYLNRRRYRALIPASIT 746 (862)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888877777766655
No 23
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=31.71 E-value=9.4e+02 Score=28.55 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=64.8
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHHh---------------cchHHHHHHHHHhcCCCcccccccCCcchHHH-HHHhhc
Q 002205 186 LLLEAVVFLIDSRLPWTCKVVSYLLE---------------RNVFTLLRELIVTGKESMEIHSSYGRISSLER-VLTLII 249 (953)
Q Consensus 186 ~~L~~l~~lt~~~~~W~~~i~~yL~q---------------~g~y~~Lr~ll~~~~~~~~~~~~~~~~~~l~~-ll~l~~ 249 (953)
-.|+++.+..+...|....++.+|.+ |..|.++..+|......... ..+.+|. +++...
T Consensus 49 ~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~-----~v~~~E~~L~P~f~ 123 (435)
T PF03378_consen 49 CIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPE-----AVSQFEEALFPPFQ 123 (435)
T ss_dssp HHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChh-----HHHHHHHHHHHHHH
Confidence 45555555555555555555555554 77899999888864432111 1234444 333321
Q ss_pred ccccCCCCccCCCCCcc-chhhhhcccchhhhhhhhHHHHHhhcCCchhhHHHHHHHHhhhcccCCccccCCcchHHHHH
Q 002205 250 PHIGQKPCICPNIDPRW-SFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLL 328 (953)
Q Consensus 250 ~~~~~~~~~~~~~~~~~-~f~~~IlsiP~l~~~~p~~~~~~~~~~L~~~~~~~~~~~l~~~~~~~~~~~s~~~p~~~~lL 328 (953)
.-+... . .++ -|.-|||+ .+.+.-.+..+++.|.+-..+++ +-.-+ +....+|....||
T Consensus 124 ~ILq~d-----V--~EF~PYvfQIla---------~Lle~~~~~~~p~~y~~L~~~Ll-~p~lW---e~~gniPalvrLL 183 (435)
T PF03378_consen 124 EILQQD-----V--QEFIPYVFQILA---------QLLELRPSSPLPDAYKQLFPPLL-SPALW---ERRGNIPALVRLL 183 (435)
T ss_dssp HHHHTT--------TTTHHHHHHHHH---------HHHHHSS--S--TTTGGGHHHHT-SGGGG---GSTTTHHHHHHHH
T ss_pred HHHHHH-----H--HHHHHHHHHHHH---------HHHHcCCCCCCcHHHHHHHHHHc-Ccchh---ccCCCcCcHHHHH
Confidence 111100 0 001 24444444 33222223456666644222221 11111 2234556667777
Q ss_pred HHHHHHhhhhccCCCCcchhhhhHHHHHHHHHhh
Q 002205 329 GNILETAGVALSQPDCSFEMGVDLAAITTFLLKA 362 (953)
Q Consensus 329 ~Nl~~l~~~~l~~~~~~~~~~~~~v~v~~~lL~~ 362 (953)
.+.+.-........ ..+..++.|..+|+++
T Consensus 184 ~a~i~k~~~~i~~~----~~l~~iLgvFQkLi~s 213 (435)
T PF03378_consen 184 QAYIKKDPSFIVAN----NQLEPILGVFQKLIAS 213 (435)
T ss_dssp HHHHHHHGGG--------S-CHHHHHHHHHHHT-
T ss_pred HHHHHhCchhhcch----hhHHHHHHHHHHHHCC
Confidence 77775543222211 2223567788888876
No 24
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=22.06 E-value=1.1e+02 Score=21.42 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=16.0
Q ss_pred HHHHHHHHhcchHHHHHHHHH
Q 002205 203 CKVVSYLLERNVFTLLRELIV 223 (953)
Q Consensus 203 ~~i~~yL~q~g~y~~Lr~ll~ 223 (953)
.-|+.||+++||...-..+..
T Consensus 5 ~lI~~YL~~~Gy~~tA~~f~~ 25 (27)
T PF08513_consen 5 QLIYDYLVENGYKETAKAFAK 25 (27)
T ss_dssp HHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHh
Confidence 348999999999988876654
Done!