Query 002205
Match_columns 953
No_of_seqs 359 out of 1514
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 16:51:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 100.0 7.8E-70 2.7E-74 617.3 26.4 313 626-953 13-329 (405)
2 2oni_A E3 ubiquitin-protein li 100.0 1.5E-69 5E-74 615.4 24.9 312 628-953 11-325 (392)
3 1zvd_A SMAD ubiquitination reg 100.0 5.5E-68 1.9E-72 600.8 26.8 300 638-953 3-305 (380)
4 1nd7_A WW domain-containing pr 100.0 1E-67 3.4E-72 598.0 28.1 301 638-953 3-305 (374)
5 3olm_A E3 ubiquitin-protein li 100.0 1E-66 3.4E-71 597.9 23.8 302 635-953 51-355 (429)
6 1c4z_A E6AP, ubiquitin-protein 100.0 1.4E-66 4.8E-71 584.9 21.0 278 666-953 6-290 (358)
7 3pt3_A E3 ubiquitin-protein li 99.0 7.6E-11 2.6E-15 110.7 2.1 44 910-953 3-50 (118)
8 1n2d_C IQ2 and IQ3 motifs from 96.9 0.00096 3.3E-08 52.1 4.5 23 43-65 25-47 (48)
9 2ix7_C Myosin-5A; contractIle 96.4 0.0081 2.8E-07 48.8 7.1 42 28-69 10-51 (58)
10 2ix7_C Myosin-5A; contractIle 95.8 0.0081 2.8E-07 48.8 4.5 26 44-69 3-28 (58)
11 2kxw_B Sodium channel protein 95.8 0.0035 1.2E-07 42.6 1.7 21 43-63 3-23 (27)
12 1n2d_C IQ2 and IQ3 motifs from 95.4 0.014 4.8E-07 45.4 4.1 23 47-69 4-26 (48)
13 2l53_B CAM, voltage-gated sodi 95.2 0.01 3.4E-07 41.6 2.4 23 43-65 3-25 (31)
14 3gn4_A Myosin-VI; unconvention 93.4 0.059 2E-06 51.8 4.2 30 43-72 42-71 (148)
15 2dfs_A Myosin-5A; myosin-V, in 83.6 1.1 3.8E-05 57.0 6.4 21 46-66 791-811 (1080)
16 1wdc_A Scallop myosin; calcium 82.5 1.2 4.1E-05 36.6 4.1 23 47-69 7-29 (64)
17 1w7j_A Myosin VA; motor protei 82.4 1 3.6E-05 55.2 5.3 28 43-70 765-792 (795)
18 2bl0_A Major plasmodial myosin 82.3 1.2 4E-05 36.5 4.0 23 47-69 5-27 (63)
19 4dck_A Sodium channel protein 82.2 1.2 4E-05 44.0 4.5 25 43-67 127-151 (168)
20 1wdc_A Scallop myosin; calcium 80.5 2.4 8.1E-05 34.8 5.2 32 33-64 19-50 (64)
21 2bl0_A Major plasmodial myosin 79.9 2.1 7.2E-05 35.0 4.7 30 34-63 18-47 (63)
22 1kk8_A Myosin heavy chain, str 78.3 2.3 7.9E-05 52.5 6.4 27 43-69 776-802 (837)
23 2dfs_A Myosin-5A; myosin-V, in 74.2 4.5 0.00015 51.5 7.6 27 43-69 813-839 (1080)
24 1kk8_A Myosin heavy chain, str 69.0 3.6 0.00012 50.8 4.9 23 43-65 802-824 (837)
25 1i84_S Smooth muscle myosin he 57.7 9.6 0.00033 49.1 6.0 26 44-69 790-815 (1184)
26 3dvk_B Voltage-dependent R-typ 44.1 8.8 0.0003 24.9 1.2 16 48-63 8-23 (23)
27 1i84_S Smooth muscle myosin he 40.9 18 0.00063 46.5 4.7 22 43-64 815-836 (1184)
28 3b09_A Peptidyl-prolyl CIS-tra 35.7 59 0.002 28.3 5.7 63 841-904 13-81 (88)
29 2f3y_B Voltage-dependent L-typ 30.3 35 0.0012 22.6 2.4 19 48-66 4-22 (26)
30 2be6_D Voltage-dependent L-typ 24.9 56 0.0019 23.5 2.8 18 48-65 13-30 (37)
31 4anj_A Unconventional myosin-V 24.3 43 0.0015 42.3 3.8 38 34-72 763-800 (1052)
32 3dve_B Voltage-dependent N-typ 20.7 12 0.00041 24.3 -1.1 15 48-62 7-21 (23)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=7.8e-70 Score=617.31 Aligned_cols=313 Identities=34% Similarity=0.611 Sum_probs=283.3
Q ss_pred hhHhhhcCCcccchhhHHHHHHHHHHHHHhhcCCCCCcceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCc
Q 002205 626 ANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV 705 (953)
Q Consensus 626 ~~~il~~~Pfl~pf~~rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~ 705 (953)
..+.+.+-|+ +||+.|+++|+..+.+.+.... ....+++|||++|++||++++...++.+||++|+|+|.|
T Consensus 13 ~~~~~~~~~~-~~f~~k~~~F~~~l~~~~~~~~----~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g---- 83 (405)
T 3h1d_A 13 GLEVLFQGPH-MDFDVKRKYFRQELERLDEGLR----KEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG---- 83 (405)
T ss_dssp CCGGGGCSTT-SCHHHHHHHHHHHHHHHTTTCC----CCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT----
T ss_pred hhHHhhcCCC-cCHHHHHHHHHHHHHhhhcCCC----CCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECC----
Confidence 3456777888 5999999999998876544221 234589999999999999999988889999999999998
Q ss_pred ccccccCCCccHHHHHHHHHHhhccccCCccccCC-c-cceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcH
Q 002205 706 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-H-LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFAT 783 (953)
Q Consensus 706 ~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~-~-~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~ 783 (953)
|+|+|+||++||||+++++|+|+|++|||..+++ + .++|||.+. ..++++++|+|+|+++|+|||+|+++|++||+
T Consensus 84 -E~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~ 161 (405)
T 3h1d_A 84 -EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTR 161 (405)
T ss_dssp -CCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC------CHHHHHHHHHHHHHHHHHHTCCCCCEECH
T ss_pred -CCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccc-cChhHHHHHHHHhHHHHHHHhCCCccCCCccH
Confidence 7899999999999999999999999999998754 3 356999875 46788999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCccccCHHHHHHHHhhhhccCCccc--cceeEEEEecccCcceeeecCCCCCccccChhhHHHHHH
Q 002205 784 FFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE--LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIH 861 (953)
Q Consensus 784 ~f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~--l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~ 861 (953)
+|||+|+|.+++++||+++||++|+||++|++++ +++ ++++|+++.+.+|...++||+|||++|+||++||.+||+
T Consensus 162 ~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~--~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~ 239 (405)
T 3h1d_A 162 SFYKHILGKSVRYTDMESEDYHFYQGLVYLLEND--VSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVH 239 (405)
T ss_dssp HHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSC--GGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCC--hhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999764 444 578888887888988899999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHh
Q 002205 862 LVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLK 941 (953)
Q Consensus 862 l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~ 941 (953)
++++|+++++|+.|++||++||++|||.++|++|+|+||+.||||.+ +||++||++||.|. ||+++|++|+|||+|++
T Consensus 240 l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~-~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~ 317 (405)
T 3h1d_A 240 LVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLP-TIDIDDLKSNTEYH-KYQSNSIQIQWFWRALR 317 (405)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCC-CCCHHHHHHTEEEE-SSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCC-CCCHHHHHhhCccc-CCCCCCchHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999997 59999999999997 89999999999999999
Q ss_pred cCCHHHHhhhcC
Q 002205 942 SFSLENQKKFLK 953 (953)
Q Consensus 942 ~~s~eer~~fLk 953 (953)
+||+|||++|||
T Consensus 318 ~~s~eer~~fL~ 329 (405)
T 3h1d_A 318 SFDQADRAKFLQ 329 (405)
T ss_dssp HSCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 999999999985
No 2
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=1.5e-69 Score=615.36 Aligned_cols=312 Identities=31% Similarity=0.557 Sum_probs=285.2
Q ss_pred HhhhcCCcccchhhHHHHHHHHHHHHHhhcCCCCCcceeeEEecCCcHHHHHHHHHccCC-hhhccCceEEEEeeccCcc
Q 002205 628 EILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMS-EEDLRGAIRVTFVNELGVE 706 (953)
Q Consensus 628 ~il~~~Pfl~pf~~rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~-~~~lk~~l~V~F~~e~G~~ 706 (953)
.++...||.+||+.|+.+|+..+.+. .....+.+++|||++|++||++++...+ ++.+|++++|+|.|
T Consensus 11 ~~~~~~p~~~~f~~k~~~f~~~l~~~------~~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~g----- 79 (392)
T 2oni_A 11 RENLYFQGSREFKQKYDYFRKKLKKP------ADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFES----- 79 (392)
T ss_dssp ---CCSTTHHHHHHHHHHHHHHCCCC------SSSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC------
T ss_pred hcccCCCccccHHHHHHHHHHHHhcc------cCCCCCEEEEEcCCchHHHHHHHHHccCcHHhhCccEEEEECC-----
Confidence 45677999999999999999876321 1223467899999999999999999875 34689999999998
Q ss_pred cccccCCCccHHHHHHHHHHhhccccCCccccC--CccceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHH
Q 002205 707 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETS--DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 784 (953)
Q Consensus 707 E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~--~~~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~ 784 (953)
|+|+|+|||+||||+++++|+|+|++|||..++ +..++|||.+....++++++|+|+|+++|+|||+|+++|++||++
T Consensus 80 E~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~ 159 (392)
T 2oni_A 80 EKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRP 159 (392)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHH
T ss_pred CccccCCccHHHHHHHHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCccchHH
Confidence 789999999999999999999999999999754 345789998754456789999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCccccCHHHHHHHHhhhhccCCccccceeEEEEecccCcceeeecCCCCCccccChhhHHHHHHHHH
Q 002205 785 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVS 864 (953)
Q Consensus 785 f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~ 864 (953)
|||+|+|.+++++||+++||++|+||++|++ +|+++++|+|+++.+.+|...++||+|||++|+||++||.+||++++
T Consensus 160 f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~--~d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~ 237 (392)
T 2oni_A 160 FYKMMLGKQITLNDMESVDSEYYNSLKWILE--NDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVI 237 (392)
T ss_dssp HHHHHTTCCCCTHHHHTTCHHHHHHHHHHHH--SCCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHhCHHHHHHHHHHhc--CChhHceeeEEEeeecCCceeEEecCCCCccCccchhhHHHHHHHHH
Confidence 9999999999999999999999999999986 46789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCC
Q 002205 865 NHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFS 944 (953)
Q Consensus 865 ~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s 944 (953)
+|+++++|+.|++||++||++|||.++|++|+|+||+.||||.++ ||++||++||+|.|||+++|++|+|||+||++||
T Consensus 238 ~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~-id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s 316 (392)
T 2oni_A 238 QWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMD 316 (392)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSC
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCC-CCHHHHhcceEECCCCCCCCchheeHHHHHHhCC
Confidence 999999999999999999999999999999999999999999975 9999999999999999999999999999999999
Q ss_pred HHHHhhhcC
Q 002205 945 LENQKKFLK 953 (953)
Q Consensus 945 ~eer~~fLk 953 (953)
+|||++|||
T Consensus 317 ~eer~~fL~ 325 (392)
T 2oni_A 317 AEKRIRLLQ 325 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999985
No 3
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.5e-68 Score=600.77 Aligned_cols=300 Identities=29% Similarity=0.561 Sum_probs=280.0
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCCCcceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcccccccCCCccH
Q 002205 638 PFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFK 717 (953)
Q Consensus 638 pf~~rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~r 717 (953)
+|+.|+++|+..+.+.+.. ....+++|||++|++|+++++...++.++|++|+|+|.| |+|+|+|||+|
T Consensus 3 ~f~~k~~~f~~~l~~~~~~------~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~r 71 (380)
T 1zvd_A 3 DLVQKLKILRQELSQQQPQ------AGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRG-----EEGLDYGGVAR 71 (380)
T ss_dssp SHHHHHHHHHHHHHHHSCS------SCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----CCCSCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCC------CCceEEEEccCCHHHHHHHHHHccCHHHhcCceEEEECC-----CcCcCCCccHH
Confidence 6899999999988654321 234589999999999999999998888999999999998 78999999999
Q ss_pred HHHHHHHHHhhccccCCccccCCc--cceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCCCCC
Q 002205 718 DFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNY 795 (953)
Q Consensus 718 Eff~~l~~e~f~p~~glF~~~~~~--~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~~ 795 (953)
|||+++++|+|+|++|||..+++. .++|||.+. ..++++++|+|+|+++|+|||+|+++|++||++|||+|+|.+++
T Consensus 72 Eff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~ 150 (380)
T 1zvd_A 72 EWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSA-VNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSIT 150 (380)
T ss_dssp HHHHHHHHHHTSGGGSSEEEETTEEEEEEECTTGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCcCCCeeccCCCCeeeccCchhh-cChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhCCCCC
Confidence 999999999999999999987643 467999886 46778999999999999999999999999999999999999999
Q ss_pred CCCccccCHHHHHHHHhhhhccCCccc-cceeEEEEecccCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhhHHH
Q 002205 796 LNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ 874 (953)
Q Consensus 796 l~DL~~~Dp~l~~sL~~l~~~~~dv~~-l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~ 874 (953)
++||+++||++|+||++|++ +|+++ ++++|+++.+.+|+..++||+|||++|+||++||.+||+++++|+++++|+.
T Consensus 151 l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~ 228 (380)
T 1zvd_A 151 LDDMELVDPDLHNSLVWILE--NDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEA 228 (380)
T ss_dssp STTHHHHCHHHHHHHHHHHH--SCCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHhCHHHHHHHHHHHh--CCccccccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999986 46666 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 875 QSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 875 q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
|++||++||++|||.++|++|+|+||+.||||.++ ||++||++||.|. ||+++|++|+|||+||++||+|||++|||
T Consensus 229 q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~ 305 (380)
T 1zvd_A 229 QFLALQKGFNEVIPQHLLKTFDEKELELIICGLGK-IDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQ 305 (380)
T ss_dssp HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSS-CCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCC-CChhhhhhccEec-CCCCCcchhhhHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999874 9999999999997 89999999999999999999999999985
No 4
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=1e-67 Score=598.03 Aligned_cols=301 Identities=29% Similarity=0.542 Sum_probs=279.1
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCCCcceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcccccccCCCccH
Q 002205 638 PFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFK 717 (953)
Q Consensus 638 pf~~rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~r 717 (953)
+|+.|+.+|+..+.... ...+.+++|||++|++|+++++...++.++|++++|+|.| |+|+|+|||+|
T Consensus 3 ~f~~k~~~f~~~~~~~~-------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~F~g-----E~G~D~GG~~r 70 (374)
T 1nd7_A 3 GFRWKLAHFRYLCQSNA-------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGLAR 70 (374)
T ss_dssp THHHHHHHHHHHHHHTC-------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHHHH
T ss_pred ChHHHHHHHHHHHhhcC-------CCCCeEEEECCCCHHHHHHHHHHhcCHHhccceEEEEECC-----CCCcCCCccHH
Confidence 68999999998764321 1245689999999999999999999888999999999998 78999999999
Q ss_pred HHHHHHHHHhhccccCCccccCC--ccceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCCCCC
Q 002205 718 DFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNY 795 (953)
Q Consensus 718 Eff~~l~~e~f~p~~glF~~~~~--~~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~~ 795 (953)
|||+++++|+|+|++|||..+++ ..++|||.+. ..++++++|+|+|+++|+|||+|+++|++||++|||+|+|.+++
T Consensus 71 Eff~ll~~el~~p~~~lF~~~~~~~~~~~~~p~s~-~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~ 149 (374)
T 1nd7_A 71 EWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLT 149 (374)
T ss_dssp HHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCccccccccCCCCceeccCCccc-CCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhCCCCC
Confidence 99999999999999999997653 3568999876 56778999999999999999999999999999999999999999
Q ss_pred CCCccccCHHHHHHHHhhhhccCCccccceeEEEEecccCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhhHHHH
Q 002205 796 LNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQ 875 (953)
Q Consensus 796 l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q 875 (953)
++||+++||++|+||++|++++.+..+++++|+++.+.+|+..++||+|||++|+||++||.+||+++++|+++++|+.|
T Consensus 150 l~Dl~~~Dp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q 229 (374)
T 1nd7_A 150 IKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQ 229 (374)
T ss_dssp HHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHhhHHHHHhhhhhccCChhhhhcceeEEEeeccCCceeeEecCCCCcCceeccccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999998654433589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 876 SSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 876 ~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
++||++||++|||.++|++|+|+||+.+|||.++ ||++||++||.|.| |+++|++|+|||+||++||+|||++|||
T Consensus 230 ~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~ 305 (374)
T 1nd7_A 230 TKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQ 305 (374)
T ss_dssp HHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCC-CCHHHHhhheEEcC-CCCCCcceeeHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999975 99999999999984 9999999999999999999999999985
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-66 Score=597.93 Aligned_cols=302 Identities=29% Similarity=0.574 Sum_probs=270.9
Q ss_pred cccchhhHHHHHHHHHHHHHhhcCCCCCcceeeEEecCCcHHHHHHHHHccCChhhccCceEEEEeeccCcccccccCCC
Q 002205 635 FLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 714 (953)
Q Consensus 635 fl~pf~~rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG 714 (953)
+--+|+.|..+|+.+.. . ....++.+++|||++|+||+++++...++.++|++|+|+|.| |+|+|+||
T Consensus 51 y~~~~~~k~~~f~~~~~---~----~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG 118 (429)
T 3olm_A 51 YKRDFRRKVIYFRSQPA---L----RILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDG-----EEGLDYGG 118 (429)
T ss_dssp HHHHHHHHHHHHHSSGG---G----SCCSSCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEET-----TC------
T ss_pred ccccchHHHHHHHHHHh---h----cCCCCceEEEEecchhHHHHHHHHHhcChHhcCcceEEEECC-----CCccCCCh
Confidence 56678899999886532 1 112345689999999999999999988889999999999998 78999999
Q ss_pred ccHHHHHHHHHHhhccccCCccccCC--ccceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCC
Q 002205 715 IFKDFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQK 792 (953)
Q Consensus 715 ~~rEff~~l~~e~f~p~~glF~~~~~--~~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~ 792 (953)
|+||||+++++|+|+|++|||..+++ ..++|||.+. ..++++++|+|+|++||+|||+|+++|++||++|||+|+|.
T Consensus 119 ~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~ 197 (429)
T 3olm_A 119 VSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSG-INPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRK 197 (429)
T ss_dssp --CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHcCccCCCceeeCCCCeeEeeCCccc-CCHHHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHhhcCC
Confidence 99999999999999999999997653 3578999886 45788999999999999999999999999999999999999
Q ss_pred CCCCCCccccCHHHHHHHHhhhhccCCccc-cceeEEEEecccCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhh
Q 002205 793 YNYLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQ 871 (953)
Q Consensus 793 ~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~-l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~ 871 (953)
+++++||+++||++|++|++|++ +|+++ ++++|+++.+.+|+..++||+|||++|+||++||.+||+++++|+++++
T Consensus 198 ~~~l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~ 275 (429)
T 3olm_A 198 KVVLQDMEGVDAEVYNSLNWMLE--NSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDR 275 (429)
T ss_dssp CCCHHHHHHHCHHHHHHHHHHTT--SCCTTTCCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHhHHHHHHHHHHHh--CCHHHhhcCceEEEeccCCceeeEeccCCCcccccCchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986 56655 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHHhhh
Q 002205 872 IRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKF 951 (953)
Q Consensus 872 i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer~~f 951 (953)
|+.|++||++||++|||.++|++|+|+||+.||||.++ ||++||++||.|. ||+++|++|+|||+||++||+|||++|
T Consensus 276 v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~-id~~dl~~~t~y~-Gy~~~~~~I~~FW~vv~~~s~eer~~f 353 (429)
T 3olm_A 276 VQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAE-IDIEDWKKHTDYR-GYQESDEVIQWFWKCVSEWDNEQRARL 353 (429)
T ss_dssp THHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCC-CCHHHHHHhcccc-CCCCCchHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999975 9999999999997 899999999999999999999999999
Q ss_pred cC
Q 002205 952 LK 953 (953)
Q Consensus 952 Lk 953 (953)
||
T Consensus 354 L~ 355 (429)
T 3olm_A 354 LQ 355 (429)
T ss_dssp HH
T ss_pred Hh
Confidence 85
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=1.4e-66 Score=584.89 Aligned_cols=278 Identities=32% Similarity=0.593 Sum_probs=261.4
Q ss_pred eeEEecCCcHHHHHHHHHcc---CChhhccCceEEEEeeccCcccccccCCCccHHHHHHHHHHhhccccCCccccCC-c
Q 002205 666 SRFRIRRDHILEDAYSQMST---MSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-H 741 (953)
Q Consensus 666 ~~i~VrR~~i~eda~~~l~~---~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEff~~l~~e~f~p~~glF~~~~~-~ 741 (953)
.+++|||++|++||++++.. .++.++|++|+|+|+| |+|+|+|||+||||+++++|+|+|++|||..+++ +
T Consensus 6 ~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~ 80 (358)
T 1c4z_A 6 LRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEG-----EQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTK 80 (358)
T ss_dssp CCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETT-----CCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTT
T ss_pred EEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEEEECC-----CcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCCC
Confidence 47999999999999999853 4568899999999998 7899999999999999999999999999998764 5
Q ss_pred cceeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCcccccCcHHHHHhhcCCCCCCCCccccCHHHHHHHHhhhhccCCcc
Q 002205 742 LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADIS 821 (953)
Q Consensus 742 ~l~pnp~s~~~~~~~l~~f~flG~llG~Ai~~~~~l~l~f~~~f~k~Llg~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~ 821 (953)
.+||||.+.. ..++|+|+|+++|+|||+|+++|++||++|||+|+|.+++++||+++||++|+||++|+++++|++
T Consensus 81 ~~~~np~s~~----~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~~ 156 (358)
T 1c4z_A 81 LFWFNPSSFE----TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVE 156 (358)
T ss_dssp EEEECTTCCS----CHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCHH
T ss_pred eEeeCCcccc----chHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchh
Confidence 6889998742 246799999999999999999999999999999999999999999999999999999999998886
Q ss_pred -ccceeEEEEe-cccCcceeeecCCCCCccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhc-CCCHH
Q 002205 822 -ELELYFVILN-NEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWID-MFNEH 898 (953)
Q Consensus 822 -~l~L~F~~~~-~~~g~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~-~F~~~ 898 (953)
+++++|+++. +.+|+..++||+|||++|+||++||.+||+++++|+++++|++|++||++||++|||.++|. +|+|+
T Consensus 157 ~~l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ 236 (358)
T 1c4z_A 157 DDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPE 236 (358)
T ss_dssp HHTCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTH
T ss_pred hhccceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHH
Confidence 4999999984 78999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred HHHHHHcCCCCCccHHHHhhcceeCCCCCCCCHHHHHHHHHHhcCCHHHHhhhcC
Q 002205 899 ELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 899 EL~~li~G~~~~id~~dL~~~t~y~gGy~~~~~~I~~FWevl~~~s~eer~~fLk 953 (953)
||+.+|||.++ ||++||++||+|+|||+++|++|+|||+||++||+|||++|||
T Consensus 237 ELe~li~G~~~-id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~ 290 (358)
T 1c4z_A 237 EIELLICGSRN-LDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQ 290 (358)
T ss_dssp HHHHHHHCBCC-CCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHhhcccC-CCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHH
Confidence 99999999975 9999999999999999999999999999999999999999985
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.00 E-value=7.6e-11 Score=110.69 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=33.5
Q ss_pred CccHHHHhhcceeCCCCCCCC----HHHHHHHHHHhcCCHHHHhhhcC
Q 002205 910 SLDFDDLRQNTNYVGGYHSEH----YVIEMFWEVLKSFSLENQKKFLK 953 (953)
Q Consensus 910 ~id~~dL~~~t~y~gGy~~~~----~~I~~FWevl~~~s~eer~~fLk 953 (953)
-||++|||+||+|.|||+++| ++|+|||+||++||+|||++|||
T Consensus 3 ~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~ 50 (118)
T 3pt3_A 3 LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVY 50 (118)
T ss_dssp ---------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHh
Confidence 499999999999999999887 99999999999999999999985
No 8
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00096 Score=52.10 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIE 65 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (953)
++++.||++||++||||++|+..
T Consensus 25 ~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 25 EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHhh
Confidence 34567999999999999998863
No 9
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=96.39 E-value=0.0081 Score=48.79 Aligned_cols=42 Identities=21% Similarity=0.075 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002205 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (953)
Q Consensus 28 lL~~~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (953)
.+++.=.--..|..-++...||+.||++||||++|+......
T Consensus 10 ~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 10 RIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555579999999999999998887543
No 10
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=95.85 E-value=0.0081 Score=48.80 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=22.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002205 44 RQNHAAIKIQKCFRGKKAMEIEHSKV 69 (953)
Q Consensus 44 rr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (953)
+...||+.||++||||++|++....-
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r 28 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQ 28 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999887643
No 11
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=95.78 E-value=0.0035 Score=42.60 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAME 63 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~ 63 (953)
++.+-||++||+.||+|+.++
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999875
No 12
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.014 Score=45.37 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 002205 47 HAAIKIQKCFRGKKAMEIEHSKV 69 (953)
Q Consensus 47 ~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (953)
.||+.||++||||++|+......
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~ 26 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEM 26 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999987654
No 13
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=95.20 E-value=0.01 Score=41.63 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIE 65 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (953)
++.+-||++||+.||||+.++..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 34568999999999999998753
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=93.36 E-value=0.059 Score=51.85 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVREQ 72 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~e 72 (953)
.=|.+|+|+||+.||||++|++.+..++.-
T Consensus 42 ~yR~~~~i~iQktvR~~L~rkkhkPRi~g~ 71 (148)
T 3gn4_A 42 KYRAEACIKMQKTIRMWLCKRRHKPRIDGL 71 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 446789999999999999999999987765
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.64 E-value=1.1 Score=56.98 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 002205 46 NHAAIKIQKCFRGKKAMEIEH 66 (953)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~ 66 (953)
..||+.||++||||++|++.+
T Consensus 791 r~aai~IQ~~~Rg~~aR~~~~ 811 (1080)
T 2dfs_A 791 RRAAITIQRYVRGHQARCYAT 811 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 345555555555555555443
No 16
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=82.46 E-value=1.2 Score=36.56 Aligned_cols=23 Identities=13% Similarity=-0.023 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 002205 47 HAAIKIQKCFRGKKAMEIEHSKV 69 (953)
Q Consensus 47 ~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (953)
+.++.|||..|||++|+..++.+
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~ 29 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQ 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655543
No 17
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=82.41 E-value=1 Score=55.19 Aligned_cols=28 Identities=29% Similarity=0.238 Sum_probs=23.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVR 70 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R 70 (953)
++..++|+.|||+||||++|++.++..+
T Consensus 765 ~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 765 DKLRAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999987543
No 18
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=82.31 E-value=1.2 Score=36.54 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 002205 47 HAAIKIQKCFRGKKAMEIEHSKV 69 (953)
Q Consensus 47 ~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (953)
..++.|||..|||++|+..++.+
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~ 27 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAR 27 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655543
No 19
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=82.18 E-value=1.2 Score=44.05 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIEHS 67 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~~~ 67 (953)
++...||+.||+.||+|+.|+..++
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 4667899999999999999887765
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=80.49 E-value=2.4 Score=34.78 Aligned_cols=32 Identities=22% Similarity=0.078 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002205 33 RLERNRRLYLRRQNHAAIKIQKCFRGKKAMEI 64 (953)
Q Consensus 33 r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~ 64 (953)
..+|.+-.....+..|+..||+.+|+|.+++.
T Consensus 19 ~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 19 YLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45566655566667788899999999999863
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=79.91 E-value=2.1 Score=35.00 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 002205 34 LERNRRLYLRRQNHAAIKIQKCFRGKKAME 63 (953)
Q Consensus 34 ~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~ 63 (953)
.+|.+-.....+..|+..||+.+|+|..++
T Consensus 18 l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 18 VERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555566778889999999999986
No 22
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=78.29 E-value=2.3 Score=52.48 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=22.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (953)
++-.++|+.|||+||||++|++.++..
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~ 802 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQ 802 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568999999999999999987764
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.24 E-value=4.5 Score=51.49 Aligned_cols=27 Identities=30% Similarity=0.102 Sum_probs=22.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (953)
.|+..||++||++||||++|++.++..
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr 839 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMR 839 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHH
Confidence 457889999999999999999876543
No 24
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=69.01 E-value=3.6 Score=50.82 Aligned_cols=23 Identities=17% Similarity=0.012 Sum_probs=19.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEIE 65 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (953)
++|..||++||+.||||++||..
T Consensus 802 ~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 802 QDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcch
Confidence 34468999999999999998753
No 25
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=57.69 E-value=9.6 Score=49.08 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=21.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002205 44 RQNHAAIKIQKCFRGKKAMEIEHSKV 69 (953)
Q Consensus 44 rr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (953)
+-..+|+.||++||||++|++.++..
T Consensus 790 ~l~~~~~~iQ~~~Rg~l~R~~~~k~~ 815 (1184)
T 1i84_S 790 KITDVIIAFQAQCRGYLARKAFAKRQ 815 (1184)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999887654
No 26
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=44.07 E-value=8.8 Score=24.94 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHH...
Q 002205 48 AAIKIQKCFRGKKAME... 63 (953)
Q Consensus 48 aAi~IQ~~~Rg~~~r~... 63 (953)
||..||-+||.++.|+
T Consensus 8 A~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHhccC...
Confidence 7899999999998763
No 27
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=40.87 E-value=18 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.071 Sum_probs=18.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH
Q 002205 43 RRQNHAAIKIQKCFRGKKAMEI 64 (953)
Q Consensus 43 rrr~~aAi~IQ~~~Rg~~~r~~ 64 (953)
|++..||++||+.||||++++.
T Consensus 815 ~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 815 QQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3456899999999999999975
No 28
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=35.72 E-value=59 Score=28.32 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=31.7
Q ss_pred ecCCCCCccccChhhHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHhchhhhhcCCCHHHHHHHH
Q 002205 841 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ------QSSHFLRGFQQLIQKDWIDMFNEHELQLLI 904 (953)
Q Consensus 841 eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~------q~~aF~~Gf~~vi~~~~L~~F~~~EL~~li 904 (953)
-|+|.|+...++-++-.+=+.-.+-+-+.++++. ..++|.+||.+.+..... .++++|++..+
T Consensus 13 ~~~~~~~~~~~~l~t~~~K~SYaIG~~mG~~L~~~g~~~lD~dav~~Gl~Dal~Gk~~-~ls~eei~~~l 81 (88)
T 3b09_A 13 GLVPRGSHMSDLFSTMEQHASYGVGRQMGEQLAANSFEGIDIPAVQAGLADAFAGKES-AVSMEELQVAF 81 (88)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHTTCCC-SSCHHHHHHHH
T ss_pred CCCcCCcccccccCCHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHcCCCC-CCCHHHHHHHH
Confidence 5888888776654444333333344444444433 457899999998876543 46788877765
No 29
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=30.29 E-value=35 Score=22.63 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 002205 48 AAIKIQKCFRGKKAMEIEH 66 (953)
Q Consensus 48 aAi~IQ~~~Rg~~~r~~~~ 66 (953)
|...||-++|.|..|+...
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999887653
No 30
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=24.95 E-value=56 Score=23.53 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002205 48 AAIKIQKCFRGKKAMEIE 65 (953)
Q Consensus 48 aAi~IQ~~~Rg~~~r~~~ 65 (953)
|...||-++|.|+.|+..
T Consensus 13 atfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 13 ATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678899999999998865
No 31
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=24.26 E-value=43 Score=42.33 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002205 34 LERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQ 72 (953)
Q Consensus 34 ~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~e 72 (953)
.+.-++...++..++|+.||+ +|||++|++.++..+..
T Consensus 763 ~~~LE~~r~~~~~~~~~~iq~-~r~~l~r~~~~k~~~~a 800 (1052)
T 4anj_A 763 FAEFDQIMKSDPDHLAELVKR-VNHWLICSRWKKVQWCS 800 (1052)
T ss_dssp HHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
No 32
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=20.68 E-value=12 Score=24.30 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHH
Q 002205 48 AAIKIQKCFRGKKAM 62 (953)
Q Consensus 48 aAi~IQ~~~Rg~~~r 62 (953)
||..||-+||.++.+
T Consensus 7 AallI~d~~r~~k~~ 21 (23)
T 3dve_B 7 AALMIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhhc
Confidence 789999999987654
Done!