RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 002206
(953 letters)
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 187 bits (476), Expect = 2e-51
Identities = 87/495 (17%), Positives = 158/495 (31%), Gaps = 72/495 (14%)
Query: 446 LHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEKRQMRERKAAAGLFNWEEEIFVARAPGR 505
H + E + R ++ ++ F F RAPGR
Sbjct: 5 HHHHHHSSENLYFQGHMATESPATRRVQVAEHPRLLKLKEMFNSKFG-SIPKFYVRAPGR 63
Query: 506 LDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIV 565
++++G DY G VL M + + +A+ LQ+
Sbjct: 64 VNIIGEHIDYCGYSVLPMAVEQDVLIAV---------------EPVKTY------ALQLA 102
Query: 566 SYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELG 625
+ + P F ++ + W Y + + G
Sbjct: 103 N----TNPLYPDFSTSANNIQID---------------KTKPLWHNYFLCGLKGIQEHFG 143
Query: 626 VRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIV 685
+ ++ LV +P G+SSS+++ + G N+ +LA +C K E + +
Sbjct: 144 LSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERY-I 202
Query: 686 GAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI-RHSVGGADYG 744
G G MDQ S E + P V++PS F +S + + + +
Sbjct: 203 GTEGGGMDQSISFLAEEGTAKLIEFSPLR-ATDVKLPSGAVFVIANSCVEMNKAATSHFN 261
Query: 745 SVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHR 804
+ K++ L ++ ++ + L E + + P+
Sbjct: 262 IRVMECRLAAKLLAK----YKSLQWDKVLRLEEVQAKLG-ISLEEMLLVTEDALHPEPYN 316
Query: 805 FEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKAL 864
E + +G + P T + RA H E RV FK +
Sbjct: 317 PEEI------CRCLGISLEELRTQILSPNTQDVLIFKLYQRA--KHVYSEAARVLQFKKI 368
Query: 865 LTAAASDDQLTSLGELLYQCHYS-YSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFG 923
A + + LGEL+ Q H S D+LV + ++ G
Sbjct: 369 CEEAPENM-VQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGA-----------QG 416
Query: 924 AKITGGGSGGTICVI 938
+++TG G GG C +
Sbjct: 417 SRLTGAGWGG--CTV 429
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 174 bits (441), Expect = 2e-46
Identities = 92/521 (17%), Positives = 179/521 (34%), Gaps = 87/521 (16%)
Query: 469 IKDSDRTPEKRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREA 528
++D R+ E++ + A ++ + + F+AR+PGR++++G DY VL + I
Sbjct: 12 VRDLPRSFEQKHLAVVDAFFQTYHVKPD-FIARSPGRVNLIGEHIDYCDFSVLPLAIDVD 70
Query: 529 CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDE 588
A++ + + L+N P F D +
Sbjct: 71 MLCAVKILDEKNPSIT--------------------------LTNADPKFAQRKFDLPLD 104
Query: 589 GKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDS--------ISMLVSSAV 640
G M+ + + +W+ Y + V + L + + S +
Sbjct: 105 GSYMAIDPSVS--------EWSNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDI 156
Query: 641 PEGKGVSSSASVEVASMSAI-AAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASAC 699
P G G+SS+ + A + +I +DL + E++ VG G MDQ S
Sbjct: 157 PTGGGLSSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHY-VGVNNGGMDQATSVY 215
Query: 700 GEANKLLAMVCQPAELLGVVEIPS----HIRFWGIDSGIRHS---VGGADYGSVRAGAFM 752
GE + L + +P + P I F ++ ++ + +Y +
Sbjct: 216 GEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTV 275
Query: 753 GRKMIKSTASGMLPQSLPSSNGLNNIEPEV-----------------DGVELLEAEASLD 795
+ + S LP +SN + D +E +
Sbjct: 276 AANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKML 335
Query: 796 YLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYEN 855
L S R ++ + + + + + D+ V + RA H E+
Sbjct: 336 QLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAK--HVYSES 393
Query: 856 FRVKAFKALLTAA---ASDDQLTSLGELLYQCHYS-YSACGLGSDGTDRLVQLVQEIQHS 911
RV ++T+A +D T G L+ + S T+++ +
Sbjct: 394 LRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGS- 452
Query: 912 KVSKSKDGTLFGAKITGGGSGG-TICVIGRNSLRSSEQVLE 951
FG+++TG G GG TI ++ + + EQV +
Sbjct: 453 ----------FGSRLTGAGWGGCTIHLVPSGANGNVEQVRK 483
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 156 bits (395), Expect = 4e-41
Identities = 90/469 (19%), Positives = 151/469 (32%), Gaps = 116/469 (24%)
Query: 470 KDSDRTPEKRQMRE--RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIRE 527
E + + A +F +E+ +PGR++++G DY+G V I
Sbjct: 19 SHMSIVVENSTVLSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITI 78
Query: 528 ACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMD 587
+ K +L+ SE + + DL +
Sbjct: 79 GTTGLARLREDKKVKLY------------------------SENFPKLGVIEFDLDEV-- 112
Query: 588 EGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVS 647
+ + W+ YV G I++L G + +L+ +P G+S
Sbjct: 113 --------------EKKDGELWSNYVKGMIVMLK-GAGYEIDKGFELLIKGEIPTASGLS 157
Query: 648 SSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLA 707
SSAS+E+ + LN+ +L L QK EN +G G++DQ A GE K +
Sbjct: 158 SSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIE 217
Query: 708 MVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQ 767
+ C + V +++ ++ + Y A
Sbjct: 218 LDCNTLKYEMVPVELRDYDIVIMNTNKPRALTESKYNERFA------------------- 258
Query: 768 SLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYG 827
E + ++ ++ + L LS F+A E+++
Sbjct: 259 -----------ETR-EALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLI--------- 297
Query: 828 DHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYS 887
KR +YEN R K + A LT GELL H S
Sbjct: 298 -----------KRARHA-------VYENNRTKIAQKAFVA----GNLTKFGELLNASHAS 335
Query: 888 YSAC-GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTI 935
+ D L + Q+ G L GA++TG G GG
Sbjct: 336 LKDDYEVTGLELDTLAETAQKQ---------AGVL-GARMTGAGFGGCA 374
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 146 bits (371), Expect = 3e-38
Identities = 89/467 (19%), Positives = 148/467 (31%), Gaps = 124/467 (26%)
Query: 474 RTPEKRQMRE--RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHV 531
R P+ ++ R+A F E E+ APGR++++G DY+ LVL M + +
Sbjct: 12 RQPQVAELLAEARRAFREEFGAEPEL-AVSAPGRVNLIGEHTDYNQGLVLPMALELMTVL 70
Query: 532 ALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKP 591
+ +++ L
Sbjct: 71 VGSPRKDGL---------------------VSLLTTSEGADEPQ-RLQFPLPT------- 101
Query: 592 MSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651
+ + +WA YV G I + S +V S+VP G G+SSSAS
Sbjct: 102 ------AQRSLEPGTPRWANYVKGVIQYYP-AAPLP---GFSAVVVSSVPLGGGLSSSAS 151
Query: 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ 711
+EVA+ + + + A +CQ+ E+ G PCG+MDQ S G+ L + C+
Sbjct: 152 LEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCR 211
Query: 712 PAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPS 771
E V + +S +RHS+ ++Y R
Sbjct: 212 SLETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRRR----------------------- 248
Query: 772 SNGLNNIEPEVDGVELLEAEASL--DYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDH 829
+ E +L + L + EA + +
Sbjct: 249 --------------QCEEVARALGKESLREVQLEELEA-ARDLVSKEGF----------- 282
Query: 830 NDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYS 889
+R V + E R A L + G L+ + H S
Sbjct: 283 ---------RRARHV-------VGEIRRTAQAAAALRR----GDYRAFGRLMVESHRSLR 322
Query: 890 AC-GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTI 935
+ D+LV+ + G G+++TGGG GG
Sbjct: 323 DDYEVSCPELDQLVEAALAV---------PGVY-GSRMTGGGFGGCT 359
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 135 bits (343), Expect = 6e-35
Identities = 53/250 (21%), Positives = 89/250 (35%), Gaps = 49/250 (19%)
Query: 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGP 558
++PGR++++G DY+ V+ M I + A + +
Sbjct: 3 KVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIE----------------AEKHGE---- 42
Query: 559 MPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTIL 618
+ + S + G L+D W YV G
Sbjct: 43 ---VILYS-----EHFGEERKFSLNDL------------------RKENSWIDYVKGIFW 76
Query: 619 VLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQ 678
VL E I VS +P G G+SSSAS EV + + + L + LL +
Sbjct: 77 VLK-ESDYEV-GGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAK 134
Query: 679 KVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738
K EN VG PCG++DQ A G ++ + + + P + +G+R +
Sbjct: 135 KAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLD-YEYIPFPKDVSILVFYTGVRREL 193
Query: 739 GGADYGSVRA 748
++Y +
Sbjct: 194 ASSEYAERKH 203
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 100 bits (250), Expect = 5e-23
Identities = 29/205 (14%), Positives = 61/205 (29%), Gaps = 41/205 (20%)
Query: 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557
+ P ++ + G A G + M I + +++ + L
Sbjct: 6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNL------------ 53
Query: 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTI 617
+ L ++E K ++ Y I
Sbjct: 54 ------------------NDLNKSLGLNLNEIKNINPNNFG----------DFKYCLCAI 85
Query: 618 LVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLC 677
+ L + + + +SS +P G+ SSAS+ + ++ A++ + + ++A L
Sbjct: 86 KNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLG 145
Query: 678 QKVENHIVGAPCGVMDQMASACGEA 702
VE I G D
Sbjct: 146 YMVEKEIQGKASI-TDTSTITYKGI 169
Score = 50.0 bits (120), Expect = 2e-06
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 854 ENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKV 913
++ K ++ A G+L+ + H + + DR+V +
Sbjct: 218 KDEIFKEIDKVIDEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNRFG---- 273
Query: 914 SKSKDGTLFGAKITGGGSGGTICVI 938
FGAK+TG G GG CVI
Sbjct: 274 --------FGAKLTGAGGGG--CVI 288
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 99.4 bits (248), Expect = 7e-23
Identities = 31/240 (12%), Positives = 70/240 (29%), Gaps = 60/240 (25%)
Query: 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557
+ G++ ++G A G + +P + ++ L + G
Sbjct: 7 GYGESTGKIILIGEHAVTFGEPAIAVPF-------------NAGKI--KVLIEALESGN- 50
Query: 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTI 617
+ SD D ++ +
Sbjct: 51 --------------------YSSIKSDVYDG----------------MLYDAPDHLKSLV 74
Query: 618 LVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLC 677
+ + + +++ + + +P +G+ SSA+V VA + A G ++ +L
Sbjct: 75 NRFVELNNI--TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKA 132
Query: 678 QKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737
E G P G+ Q + + Q + + ID+G++ S
Sbjct: 133 NWAEQIAHGKPSGIDTQTIVSGK------PVWFQKGHAETLKTLSLDGYMVVIDTGVKGS 186
Score = 47.4 bits (113), Expect = 1e-05
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 854 ENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKV 913
V ++ + +L ++ +CH A + D ++L+++ +
Sbjct: 210 IGKLVLRASDVI----EHHKFEALADIFNECHADLKALTVSHDKIEQLMKIGK------- 258
Query: 914 SKSKDGTLFGAKITGGGSGGTICVI 938
++G + K+TG G GG ++
Sbjct: 259 ---ENGAI-AGKLTGAGRGG--SML 277
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 96.7 bits (241), Expect = 9e-22
Identities = 37/256 (14%), Positives = 75/256 (29%), Gaps = 56/256 (21%)
Query: 494 EEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHND 553
+ G++ + G G+ + I E L +I+P
Sbjct: 10 SKTTGKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRL-EINPG-------------- 54
Query: 554 KGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYV 613
G ++ ++ P ++ DE K V
Sbjct: 55 ------------VPGLQVDDQRPAIPGYIAQKRDEQI-----------------KAHQLV 85
Query: 614 AGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDL 673
+ V ++ G++ + + G+ +SAS VA A++ + LN+ ++
Sbjct: 86 LDHLKVDLSGDGLKMF------IGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEV 139
Query: 674 ALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV-VEIPSHIRFWGIDS 732
L E G P G + A+ L+ Q + + + + + +
Sbjct: 140 NLSAFVGEGGYHGTPSGADNTAAT----YGGLILYRRQNGKSVFKPIAFQQRLYLVVVGT 195
Query: 733 GIRHSVGGADYGSVRA 748
GI S V
Sbjct: 196 GINASTAKVVND-VHK 210
Score = 47.4 bits (113), Expect = 1e-05
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 842 YFVRAPVC-HPIYENFRVKAFKALLTAAA---SDDQLTSLGELLYQCHYSYSACGLGSDG 897
V P+ + +++ A L LG+L+ H +
Sbjct: 206 NDVHKMKQQQPVQFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNANHDLCRQIDVSCRE 265
Query: 898 TDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVI 938
+ +VQ + G L GAK++G G GG +
Sbjct: 266 LESIVQTCR----------TYGAL-GAKLSGTGRGG--IAV 293
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 89.0 bits (221), Expect = 2e-19
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 6/115 (5%)
Query: 623 ELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVEN 682
E E I + SA+PE +G+ SSA++ +A++ A+ + ++ L +L + E
Sbjct: 66 EYLNITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEM 125
Query: 683 HIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737
P G+ + + + +E+ D+G+
Sbjct: 126 IAHMNPSGLDAKTCLSDQ------PIRFIKNVGFTELEMDLSAYLVIADTGVYGH 174
Score = 46.6 bits (111), Expect = 2e-05
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 857 RVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKS 916
+ + ++ LG++L Q H G+ S D LV+
Sbjct: 199 LTQQAEIAISQ----KDAEGLGQILSQAHLHLKEIGVSSLEADSLVETALS--------- 245
Query: 917 KDGTLFGAKITGGGSGGTICVI 938
G L GAK++GGG GG C+I
Sbjct: 246 -HGAL-GAKMSGGGLGG--CII 263
Score = 32.4 bits (74), Expect = 0.58
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 495 EEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRL-----WKHALA 549
+++ V +A ++ ++G A G + +P+ E + S RL A+
Sbjct: 3 KKVGVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAESPWRLYEEDTLSMAVY 62
Query: 550 RHNDKGQGPMPVLQIV 565
+ ++
Sbjct: 63 ASLEYLNITEACIRCE 78
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 81.1 bits (199), Expect = 3e-16
Identities = 42/264 (15%), Positives = 86/264 (32%), Gaps = 33/264 (12%)
Query: 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKG 555
E+ + APG++ + G A G + L + + + + P L K
Sbjct: 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLV---LRPQSNGKVSLNLPNVGIKQ 60
Query: 556 QGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAG 615
+ LQ++ G P ++ + + + + + +A
Sbjct: 61 VWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKK--------VAGLPRDCVGNEGLSLLAF 112
Query: 616 TILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPR---- 671
L L R S+ ++V S +P G G+ SSA+ V +A+ A +P
Sbjct: 113 LYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRG 172
Query: 672 -----------DLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVE 720
+ + E I G P GV + +++ L + + L +
Sbjct: 173 SIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWG---GALRYQQGKMSSL----K 225
Query: 721 IPSHIRFWGIDSGIRHSVGGADYG 744
++ ++ + S G
Sbjct: 226 RLPALQILLTNTKVPRSTKALVAG 249
Score = 40.6 bits (94), Expect = 0.002
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 860 AFKAL--LTAAASDDQLTSLGELLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSK 917
+ L + AA +Q L EL+ + +A G+G D+L Q+
Sbjct: 275 CERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAAHG-------- 326
Query: 918 DGTLFGAKITGGGSGGTICVI 938
+K+TG G GG C I
Sbjct: 327 ----LHSKLTGAGGGG--CGI 341
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 77.6 bits (191), Expect = 2e-15
Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 51/214 (23%)
Query: 497 IFVARAPGRLDVMGG------IADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALAR 550
+ ++AP RL + GG +D G L+L I + +++ + + +
Sbjct: 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEI------- 55
Query: 551 HNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWA 610
+ D +S + + A
Sbjct: 56 ------------------------------NAYDAQCCKSYLSMSQLEID-------GEA 78
Query: 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP 670
+ + G ++ + + S + + P G G+ +S+++ V + A L +
Sbjct: 79 SLIKGVYNRIIRDYRL-EPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGD 137
Query: 671 RDLALLCQKVENHIVGAPCGVMDQMASACGEANK 704
+ + L ++E +G G DQ A+A G N
Sbjct: 138 YETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNY 171
Score = 31.8 bits (72), Expect = 1.1
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 21/91 (23%)
Query: 850 HPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLG--SDGTDRLVQLVQE 907
H I ++ ALL + +L + + + +
Sbjct: 233 HKIKQSAI-DTKLALL-----KGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVAT- 285
Query: 908 IQHSKVSKSKDGTLFGAKITGGGSGGTICVI 938
G + K++G G GG ++
Sbjct: 286 ---------GAGAM-AGKVSGAGGGG--FIM 304
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 57.3 bits (138), Expect = 9e-09
Identities = 29/210 (13%), Positives = 55/210 (26%), Gaps = 53/210 (25%)
Query: 498 FVARAPGRLDVMGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQ 556
+ PG+L V G A SG + + + L+ ++ +
Sbjct: 7 LQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWI------------- 53
Query: 557 GPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGT 616
P ++ +S + + P + + A
Sbjct: 54 -------------------PHYENPVSWPIGG-------------ELKPDGEHWTFTAEA 81
Query: 617 ILVLMTELGVR------FEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP 670
I + T L + I + G+ SSA+ VA ++A+ I
Sbjct: 82 INIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISM 141
Query: 671 RDLALLCQKVENHIVGAPCGVMDQMASACG 700
L + G D + G
Sbjct: 142 LKKFKLAALSHLVVQGNGSC-GDIASCMYG 170
Score = 33.8 bits (77), Expect = 0.28
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 14/77 (18%)
Query: 865 LTAAASDDQLTSLGELLYQCHYSYSACGLGSD---GTDRLVQLVQEIQHSKVSKSKDGTL 921
+ A L + + G + T L +L ++
Sbjct: 258 IIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMG--------- 308
Query: 922 FGAKITGGGSGGTICVI 938
K +G G G C I
Sbjct: 309 GAGKSSGSGGGD--CGI 323
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 2e-08
Identities = 77/461 (16%), Positives = 137/461 (29%), Gaps = 171/461 (37%)
Query: 346 AISLKPCYEGGINGGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDV 405
A S +P ++ G + +L TA A +L++ F +
Sbjct: 3 AYSTRPLT---LSHGSLEHVLLVPTAS--------FFIASQLQEQ--F----------NK 39
Query: 406 SIPEWYQT--AEDE-----------LGLSASR-SPPCTPEGDSTVKLSTEDFE--ILHGD 449
+PE + A+DE LG +S P + D + L +FE L G+
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 450 CQGLPDTMSFLKSLVELDIIKDSDRTPEKRQ--MRERKAAAGLFNWEEE------IFVAR 501
D + L++ ++D T K + ++ A + + +F A
Sbjct: 100 -----DIHALAAKLLQ-----ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 502 APGRLDVM---GG---IADYSGSLVLQMPIREACHVALQK------------ISPSKQRL 543
G ++ GG DY E L+ I S + L
Sbjct: 150 GEGNAQLVAIFGGQGNTDDY---------FEE-----LRDLYQTYHVLVGDLIKFSAETL 195
Query: 544 WKHALARHNDKGQGPMP-VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMS--------- 593
+ L R + L I+ + L N T D D++ P+S
Sbjct: 196 SE--LIRTTLDAEKVFTQGLNILEW---LENPSNTPD---KDYLLSI-PISCPLIGVIQL 246
Query: 594 --YEKAKKYFDTNP-------------------------SQKWAAYV--AGTILVLMTEL 624
Y K P + W ++ + ++ +
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 625 GVRFED-----SIS-MLVSSAVPEGKGVSSS-ASV------EVASMSAIAAAHG-----L 666
GVR + S+ ++ ++ +GV S S+ +V +H +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 667 NI-------------HPRDLALLCQKVENHIVGAPCGVMDQ 694
I P+ L L + AP G +DQ
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRK--AKAPSG-LDQ 404
Score = 57.0 bits (137), Expect = 3e-08
Identities = 101/668 (15%), Positives = 188/668 (28%), Gaps = 251/668 (37%)
Query: 93 EKYSETAVAPRKSILKDEVEWLNSIKADLV------VSDVVPVACRAAADAGIRSVCVTN 146
E++++ P + D+ E + A+LV VS +V + D + +T
Sbjct: 35 EQFNKILPEPTEGFAADD-E--PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-LTE 90
Query: 147 FSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE----FLIRLPGYCPMPAF--RDVIDVP 200
F ++ + H ++ ++ ++ LI+ Y R + P
Sbjct: 91 FENCYLEGNDI------H-ALAAKLLQENDTTLVKTKELIK--NY-----ITARIMAKRP 136
Query: 201 LVVRRLHKSR--KEVRKELGIEDDVKLLILNFGGQPAG-----WK-LKEEYLPSGWKCLV 252
+ S + V E + +L+ + FGGQ G ++ L++ Y
Sbjct: 137 F--DKKSNSALFRAVG-----EGNAQLVAI-FGGQ--GNTDDYFEELRDLY--------- 177
Query: 253 CGASDSQLPPNFIKLPKDAYTP---DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY 309
Y D + S L L R
Sbjct: 178 -----------------QTYHVLVGDLIKFSAETL---------SELI---------RTT 202
Query: 310 FNEEPFLRNMLEFYQGGVEMIRRDLLTGHW---------KPYLERA-ISLKP-------- 351
+ E F QG ++L W K YL IS P
Sbjct: 203 LDAEKV------FTQG------LNILE--WLENPSNTPDKDYLLSIPISC-PLIGVIQLA 247
Query: 352 -----CYEGGINGGEVAAHILQETAIGKN-YASDKLSGARRLRDAIIFGYELQRVPGRDV 405
G GE+ +++ T + + ++
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-------------------- 287
Query: 406 SIPEWYQTAEDEL------GLSASRSPPCTPEGDSTVKLSTEDFEILHGDCQGLPDTMSF 459
S ++ + + G+ + P T S ++ S E + +G+P M
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE-----NN--EGVPSPMLS 340
Query: 460 LKSL----VELDIIKDSDRTPEKRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADY 515
+ +L V+ + K + P ++ L N L V+ G
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPA-----GKQVEISLVN---------GAKNL-VVSG---P 382
Query: 516 SGSLVLQMPIREACHVALQKIS-PSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574
SL ++ L+K PS D+ + P S R
Sbjct: 383 PQSL-------YGLNLTLRKAKAPSGL-----------DQSRIPF------------SER 412
Query: 575 GPTFDMD-L-------SDFMDEGKPMSYEKAKKY-------------FDTNPS---QKWA 610
F L S + + + K +DT + +
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSA------IAAAH 664
++ I+ + L V++E + + + G G +S V I A
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Query: 665 GLNIHPRD 672
L+I+P D
Sbjct: 533 -LDINPDD 539
Score = 41.2 bits (96), Expect = 0.002
Identities = 34/231 (14%), Positives = 62/231 (26%), Gaps = 65/231 (28%)
Query: 513 AD------YSGSL---VLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQ 563
AD Y S+ V+ P+ H +K ++ D + +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 564 IVSYG-SELSNRGPTFDMDLSDFMDEGKP----MSY---EKAKKYFDTNPSQKWAAYVAG 615
++ + + R + + F +P M E K A AG
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFT---QPALTLMEKAAFEDLKSKGLIPAD----ATFAG 1761
Query: 616 ------TILVLMTELGV-RFEDSIS------MLVSSAVPEGKGVSSSASVEVASMSAIAA 662
L + V E + M + AVP + S+ M AI
Sbjct: 1762 HSLGEYAALASLA--DVMSIESLVEVVFYRGMTMQVAVPRDELGRSN-----YGMIAINP 1814
Query: 663 AHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPA 713
R A Q+ ++V +++ G + +
Sbjct: 1815 G-------RVAASFSQEALQYVV-------ERVGKRTGW-------LVEIV 1844
Score = 39.3 bits (91), Expect = 0.007
Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 66/228 (28%)
Query: 537 SPSKQRLWKHA--------------LARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDL 582
S + Q +W A + +N PV + +G E +G +
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINN-------PVNLTIHFGGE---KGKRIRENY 1688
Query: 583 SDFMDEGKPMSYEKAKKYF-DTNPSQKWAAYVAGTILVLMTE-----LGVRFEDSISMLV 636
S + E K +K F + N + + L+ T+ L L+
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL---------TLM 1739
Query: 637 SSA---VPEGKGVSSSASVEVA--SM---SAIAA-AHGLNI-------HPRDLALLCQK- 679
A + KG+ + + A S+ +A+A+ A ++I R + Q
Sbjct: 1740 EKAAFEDLKSKGLIPADAT-FAGHSLGEYAALASLADVMSIESLVEVVFYR--GMTMQVA 1796
Query: 680 VENHIVGAPCGVM-----DQMASACGEANKLLAMVCQPAELLG-VVEI 721
V +G M ++A++ + L +V + + G +VEI
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGKRTGWLVEI 1843
Score = 37.3 bits (86), Expect = 0.030
Identities = 28/157 (17%), Positives = 45/157 (28%), Gaps = 63/157 (40%)
Query: 30 ATRVVEV-VRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDR 88
A + VE+ + N G VV+G P + L +RK G Q+
Sbjct: 362 AGKQVEISLVN----GAKNLVVSGPP-----QSLYGLNLTLRKAKAPSGLDQSRI----- 407
Query: 89 LASLEKYSETAVAPRK----------------SILKDEVEWLNSIKADLVVSDV------ 126
+SE RK +L + I DLV ++V
Sbjct: 408 -----PFSE-----RKLKFSNRFLPVASPFHSHLLVPASD---LINKDLVKNNVSFNAKD 454
Query: 127 --VPVAC-------RAAADAGIRSVCVTNFS----WD 150
+PV R + + + W+
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Score = 36.2 bits (83), Expect = 0.066
Identities = 42/298 (14%), Positives = 87/298 (29%), Gaps = 97/298 (32%)
Query: 368 QETAIGKN-YASDKLSGARRLRDAI------IFGYELQRV----P-----------GRDV 405
QE +G + Y + K A+ + + +G+ + + P G+
Sbjct: 1627 QEQGMGMDLYKTSKA--AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-- 1682
Query: 406 SIPEWYQTAEDELGLSAS-RSPPCTPEGDSTVKLSTEDFEILHGDCQGLPDTMS-----F 459
I E Y E + ++ E + ++ F + L T
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINE--HSTSYTFR---SEKGLLSATQFTQPALT 1737
Query: 460 LKSLVELDIIKDSDRTPEKRQMRERKA--------A----AGLFNWEEEIFVARAPGRL- 506
L + +K P A A A + + E + V G
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATF----AGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 507 -----DVMGGIADYS------GSLVLQMPIREACHVALQKISPSKQRLWKHAL--ARHND 553
G ++Y G + +EA ++++ L + +N
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFS-QEALQYVVERVGKRTGWL----VEIVNYNV 1848
Query: 554 KGQGPMPVLQIVSYGSELSNRGPTFDMD-LSDFMDEGK-----------PMSYEKAKK 599
+ Q Q V+ G +L +D +++ ++ K +S E+ +
Sbjct: 1849 ENQ------QYVAAG-DLR------ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 35.4 bits (81), Expect = 0.11
Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 81/213 (38%)
Query: 743 YGSVRAGAFMGRKMIKSTASGMLPQSLPSSN--------GLNNIEPEVDGVELLE----- 789
Y + A R K + S + +++ N G N + + EL +
Sbjct: 126 Y--ITARIMAKRPFDKKSNSALF-RAVGEGNAQLVAIFGGQGNTDDYFE--ELRDLYQTY 180
Query: 790 -------AEASLDYLCNLS--PHRFEALYAK--NIPESIVGEEFSKNYGDHNDPVTVIDP 838
+ S + L L E ++ + NI E + +P P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL------------ENPSNT--P 226
Query: 839 KRTYFVRAPVCHPI--------YENF-RVKAF----------------KALLTA---AAS 870
+ Y + P+ P+ Y ++ F + L+TA A +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 871 D------DQLTSLGELL----YQCHYSYSACGL 893
D + +L +C+ +Y L
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Score = 32.3 bits (73), Expect = 1.0
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 32/124 (25%)
Query: 822 FSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAA----ASDDQLTSL 877
+ ++G + V P ++F+ + + F +L A+DD+ T+
Sbjct: 9 LTLSHGSLEHVLLV--PTASFFI--------ASQLQ-EQFNKILPEPTEGFAADDEPTTP 57
Query: 878 GELL--YQCHYSYSACGLGSDGTDRLVQLV-----------QEIQHSKVSK---SKDGTL 921
EL+ + + S D+++ L +I H+ +K D TL
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTTL 116
Query: 922 FGAK 925
K
Sbjct: 117 VKTK 120
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 54.7 bits (132), Expect = 8e-08
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 9/155 (5%)
Query: 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFI 69
S + +H+ F G GH + +V+ L++ GH V F +++++
Sbjct: 9 SVTPRHISF---FNIPGHGHVNPSLGIVQELVARGHRVSYAITDE---FAAQVKAAGA-- 60
Query: 70 RKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPV 129
V+ D + E + +L + + DL+V D+
Sbjct: 61 TPVVYDSILPKESNPEESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASW 120
Query: 130 ACRAAADA-GIRSVCVTNFSWDFIYAEYVMAAGHH 163
I V ++ + E + A
Sbjct: 121 PAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQD 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 9e-08
Identities = 109/763 (14%), Positives = 227/763 (29%), Gaps = 237/763 (31%)
Query: 162 HHHRSIVWQIAE-DYSHCEFL-IRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGI 219
HHH + ++ E Y + + L + + +DV D+P + S++E+ +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL----SKEEIDHIIMS 57
Query: 220 EDDVKLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQLPPNFIKLPKDAYTPDFMAA 279
+D V + F W L + V + L N+ F+ +
Sbjct: 58 KDAVSGTLRLF------WTL-LSKQEEMVQKFV----EEVLRINY----------KFLMS 96
Query: 280 SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHW 339
I ++ ++ ++ R +N+ F + V R +
Sbjct: 97 ------PIKTEQRQPSMMTRM-YIEQRDRLYNDNQ------VFAKYNVS--RLQP---YL 138
Query: 340 KPYLERAI-SLKPCYEGGIN----GGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFG 394
K L +A+ L+P + G GK + ++
Sbjct: 139 K--LRQALLELRP--AKNVLIDGVLG-----------SGKTW----VA-LDVCLS----- 173
Query: 395 YELQRVPGRDVSIPEW-----YQTAEDEL----GLSASRSPPCTPEGD--STVKLSTEDF 443
Y++Q + W + E L L P T D S +KL
Sbjct: 174 YKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 444 EILHGDCQGLPDTMS---FLKSLVELDIIKDSDRTPEKRQMRERKAAAGLFNWEEEIFV- 499
+ L + + L+ L ++++ + A FN +I +
Sbjct: 231 Q------AELRRLLKSKPYENCLLVLLNVQNA---------KAWNA----FNLSCKILLT 271
Query: 500 ARAPGRLDVMGGIADYSGSLVLQMPI---REACHVALQKISPSKQRLWKHALARHNDKGQ 556
R D + SL E + L+ + Q L + L +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN----- 326
Query: 557 GPMPVLQIVSYGSELSNRGPTFD-------MDLSDFMDEGKPMSYEK-----AKKYF--- 601
P + I + + T+D L+ ++ S +K F
Sbjct: 327 -PRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIE----SSLNVLEPAEYRKMFDRL 378
Query: 602 -----DTN-PSQK----WAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651
+ P+ W + ++V++ +L S++ E + S+ S
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-----SLV------EKQPKESTIS 427
Query: 652 VEVASMSAIAAAHGLNIHPRDLAL-LCQKVENHIVGAPCGVMDQMASACGEANKLLAMVC 710
I + L L K+EN + + + +
Sbjct: 428 ----------------IP--SIYLELKVKLEN---------EYALHRSIVDHYNIPKTFD 460
Query: 711 QPAELLGVVE------IPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGM 764
+ ++ I H++ I+ R ++ + R F+ +K+ + +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLK--NIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWN 515
Query: 765 LPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSK 824
S+ ++ L + + Y+C+ P +E L +I +F
Sbjct: 516 ASGSILNT--------------LQQLKFYKPYICDNDPK-YERLV-----NAI--LDFLP 553
Query: 825 NYGDHNDPVTVIDPKRTYFVRAPVCHP---IYENFRVKAFKAL 864
++ +I K T +R + I+E +A K +
Sbjct: 554 KIEEN-----LICSKYTDLLRIALMAEDEAIFE----EAHKQV 587
Score = 55.2 bits (132), Expect = 1e-07
Identities = 76/540 (14%), Positives = 139/540 (25%), Gaps = 173/540 (32%)
Query: 21 YVTGHG---FGHATRVVEVVRNLISAGHDVHVVTGAPDFVF---TSEIQSPRLFIRKVLL 74
V G G ++V V +F SP + +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCL-------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 75 DCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA 134
+ + + +S K ++ L + N + LV+ +V
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNV-------- 253
Query: 135 ADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYS-HCEFLI--RLPGYCPMP 191
+ + ++ C+ L+ R
Sbjct: 254 --------------QN------------------AKAWNAFNLSCKILLTTR-------- 273
Query: 192 AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYL---P--- 245
F+ V D H S L D+VK L+L + L E L P
Sbjct: 274 -FKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRL 330
Query: 246 --------------SGWKCLVC-------GASDSQLPPN-----FIKL---PKDAYTPDF 276
WK + C +S + L P F +L P A+ P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT- 389
Query: 277 MAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336
+ + + + + ++ ++ + L+
Sbjct: 390 --------------ILLSLIWFDVIK---------SDV--MVVVN------KLHKYSLVE 418
Query: 337 GHWKPYLERAISLKPCY--EGGINGGEVAAH--ILQETAIGKNYASDKLSGARRLRDAII 392
K IS+ Y E A H I+ I K + SD L D
Sbjct: 419 KQPKEST---ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY--LDQYF 473
Query: 393 F---GYELQRV--PGRDVSIPEWYQTAED----ELGLSASRSPPCTPEGDSTVKLSTEDF 443
+ G+ L+ + P R + D E + + + +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFL---DFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 444 E--ILHGDC---QGLPDTMSFLKSLVELDIIKDSDRTPEKRQMRERKAAAGLFNWEEEIF 498
+ I D + + + FL +E ++I + +R L +E IF
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPK-IEENLI----CSKYTDLLR-----IALMAEDEAIF 580
Score = 54.5 bits (130), Expect = 1e-07
Identities = 95/653 (14%), Positives = 184/653 (28%), Gaps = 180/653 (27%)
Query: 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAIGKNY 376
+++L ++ + + + + +S E HI+
Sbjct: 19 KDILSVFE---DAFVDNFDCKDVQDMPKSILS-----------KEEIDHIIMS------- 57
Query: 377 ASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELG------LSASRSPPCTP 430
D +SG RL L V + E+ L +S ++ P
Sbjct: 58 -KDAVSGTLRLFWT------LLSKQEEMV-----QKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 431 EGDSTVKLSTEDFEILHGDCQGLPDTMSFLKSLVELDIIKDSDRTPEKRQMRERKAAAGL 490
+ + + D L+ D Q F K V R ++R+ L
Sbjct: 106 SMMTRMYIEQRD--RLYNDNQ------VFAKYNVS--------RLQPYLKLRQ-----AL 144
Query: 491 FNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALAR 550
V +D + G SG + + C + + W + L
Sbjct: 145 LELRPAKNVL-----IDGVLG----SGKTWV---ALDVCLSYKVQCKMDFKIFWLN-LKN 191
Query: 551 HNDKGQGPMPV----LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYF----- 601
N + QI + S+ + + E + K+K Y
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLV 249
Query: 602 --DTNPSQKWAAYVAG-TILVLMTELGV-RFEDSISMLVSSAVPEGKGVSSSASVEVASM 657
+ ++ W A+ IL+ V F + + S ++ +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 658 SAIAAAHGL-----NIHPRDLALLCQKVENHI--------VGAPCGVMDQMASACGEANK 704
L +PR L+++ + + + + V D++ + +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC-----DKLTTIIESSLN 364
Query: 705 LLAMVCQPAEL------LGV----VEIPSHI--RFWGIDSGIRHSVGGADYGSVR--AGA 750
+L +PAE L V IP+ + W V
Sbjct: 365 VL----EPAEYRKMFDRLSVFPPSAHIPTILLSLIW----------FDVIKSDVMVVVNK 410
Query: 751 FMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYA 810
+++ Q S+ + +I LE + L+ L HR +
Sbjct: 411 LHKYSLVEK-------QPKESTISIPSI--------YLELKVKLENEYAL--HR-SIVDH 452
Query: 811 KNIPESIVGEEFSK----NY-----GDHNDPVTVIDPKRTYFVRAPVCHPIYENFR---V 858
NIP++ ++ Y G H + + + T F ++ +FR
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRM------VFLDFRFLEQ 505
Query: 859 KAFKALLTAAASDDQLTSLGEL-LYQCHYSYSACGLGSDGTDRLVQLVQEIQH 910
K AS L +L +L Y+ + D + +LV I
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYI--------CDNDPKYERLVNAILD 550
Score = 30.6 bits (68), Expect = 3.3
Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 58/185 (31%)
Query: 776 NNIEPEVDGVELLEAEASLDYLCNLSPHRFEALY---------AKNIPESIVGEEFSKNY 826
+++ + L + E +D++ S + + + V E NY
Sbjct: 36 KDVQDMPKSI-LSKEE--IDHIIM-SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 827 GDHNDPVTV--IDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQC 884
P+ P +Y R D+L + ++ +
Sbjct: 92 KFLMSPIKTEQRQPSMMT--------RMYIEQR--------------DRLYNDNQVFAKY 129
Query: 885 HYSYSACGLGSDGTDRLVQLVQEIQHS--KVSKSKDGTLFGAKITGGGSGGTICVIGRNS 942
+ S RL Q +++ + ++ +K+ + G GSG T + +
Sbjct: 130 NVS------------RL-QPYLKLRQALLELRPAKNVLIDG----VLGSGKTWVAL--DV 170
Query: 943 LRSSE 947
S +
Sbjct: 171 CLSYK 175
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 52.1 bits (125), Expect = 6e-07
Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 7/170 (4%)
Query: 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT 85
GH +EV+R L++ GH V F ++ + R VL DA
Sbjct: 17 AHGHVNPSLEVIRELVARGHRVTYAIPPV---FADKVAATGP--RPVLYHSTLPGPDADP 71
Query: 86 VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADA-GIRSVCV 144
++L E + L + DLV+ D+ R A G+ +V +
Sbjct: 72 EAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSL 131
Query: 145 -TNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAF 193
N Y E V + Y+ E ++ G P
Sbjct: 132 SPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEAWLKENGITEHPDT 181
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 47.8 bits (114), Expect = 1e-05
Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 13/131 (9%)
Query: 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFV----------FTSEIQSPRLFIRKVLLD 75
GH ++ + +AGH+V TG F + + F+ + +
Sbjct: 30 THGHTYPLLPLATAARAAGHEVTFATG-EGFAGTLRKLGFEPVATGMPVFDGFLAALRIR 88
Query: 76 CGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAA 135
+ LT ++L+ L + V P+ + + + ++ DLVV ++ AA
Sbjct: 89 FDTDSPEGLTPEQLSELPQIVFGRVIPQ-RVFDELQPVIERLRPDLVVQEISNYGAGLAA 147
Query: 136 DA-GIRSVCVT 145
GI ++C
Sbjct: 148 LKAGIPTICHG 158
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 45.6 bits (108), Expect = 6e-05
Identities = 38/310 (12%), Positives = 78/310 (25%), Gaps = 38/310 (12%)
Query: 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFV------------FTSEIQSPRLFIRKVL 73
H +V + L ++GH+V + P+ ++ L
Sbjct: 11 YPTHLMAMVPLCWALQASGHEVLIAAP-PELQATAHGAGLTTAGIRGNDRTGDTGGTTQL 69
Query: 74 LDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRA 133
T E+ + L + + + + +++ DV + R
Sbjct: 70 RFPNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRV 129
Query: 134 AADA-GIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPA 192
+ V + D + A + LI P + A
Sbjct: 130 LGGLLDLPVVLHR-WGVDPTAGPFSDRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQA 188
Query: 193 FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLP------- 245
P+ + S + + + G L
Sbjct: 189 SDAPQGAPVQYVPYNGSG-AFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAATE 247
Query: 246 -SGWKCLVCG-----ASDSQLPPNFIKLPKDAYTP--DFMAASDCML--GKIGYGTVSEA 295
G + ++ A + LP N P F+ + ++ G G GT A
Sbjct: 248 LPGVEAVIAVPPEHRALLTDLPDNARIAE---SVPLNLFLRTCELVICAG--GSGTAFTA 302
Query: 296 LAYKLPFVFV 305
+P + +
Sbjct: 303 TRLGIPQLVL 312
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 45.2 bits (107), Expect = 8e-05
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 11/139 (7%)
Query: 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP---------DFVFTSEIQSPRLFIRKV 72
V+ G GH ++++ +AGHDV + + V + S +V
Sbjct: 26 VSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAAGLEVVDVAPDYSAVKVFEQV 85
Query: 73 LLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACR 132
D A+ + LE++ A + ++ + ++ + DLVV +
Sbjct: 86 AKD-NPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGL 144
Query: 133 AAADA-GIRSVCVTNFSWD 150
AAD G+ +V +W
Sbjct: 145 LAADRAGVPAVQRNQSAWR 163
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 43.2 bits (102), Expect = 3e-04
Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 16/144 (11%)
Query: 28 GHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQS---------PRLFIRKVLLDCGA 78
G +V + L +AGH+V V + P L + +VL
Sbjct: 27 GFVMPLVPLSWALRAAGHEVLVAASEN---MGPTVTGAGLPFAPTCPSLDMPEVLSWDRE 83
Query: 79 VQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADA- 137
+ + LE + + + K DLV+++ + A
Sbjct: 84 GNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATL 143
Query: 138 GIRSVCVTNFSWDFIYAEYVMAAG 161
GI + S E + +AG
Sbjct: 144 GIPWIEQ---SIRLASPELIKSAG 164
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 43.3 bits (102), Expect = 3e-04
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 11/140 (7%)
Query: 28 GHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSE------IQSPRLFIRKVLLDCGAVQA 81
+ + +AGH V + D + + L IR + +
Sbjct: 12 ATVFALAPLATAARNAGHQVVMAAN-QDMGPVVTGVGLPAVATTDLPIRHFITTDREGRP 70
Query: 82 DALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADA-GIR 140
+A+ D +A S L +++ + + DL+V + A G+
Sbjct: 71 EAIPSDPVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVP 130
Query: 141 SVCVTNFSWDFIYAEYVMAA 160
+WD + A+ +
Sbjct: 131 HARQ---TWDAVDADGIHPG 147
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Length = 317
Score = 42.2 bits (98), Expect = 5e-04
Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 617 ILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALL 676
I ++ + + + M + +P G+SSS+S A + A + + LA
Sbjct: 78 ISAIIDQFRQPGQAFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQK 137
Query: 677 CQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH 724
+ G+ +A + + + V ++ ++ + +
Sbjct: 138 AK----FASGSSSRSFFGPVAAWDKDSGAIYKVETDLKMAMIMLVLNA 181
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 42.0 bits (99), Expect = 8e-04
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 12/125 (9%)
Query: 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRL-F--IRKVLLDCGAVQAD 82
G + VV L+ GH V VT F +++ + ++D A +
Sbjct: 30 SHGLILPTLTVVTELVRRGHRVSYVTAGG---FAEPVRAAGATVVPYQSEIIDADAAEVF 86
Query: 83 ALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVAC-RAAADA-GIR 140
+ Y V+ +L+ E L+ DLV+ D P + A
Sbjct: 87 GSDDLGVRPHLMYLRENVS----VLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRP 142
Query: 141 SVCVT 145
+V ++
Sbjct: 143 AVRLS 147
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 41.2 bits (97), Expect = 0.001
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 6/122 (4%)
Query: 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT 85
G GH + +V L GH + VT F E+++ + + +
Sbjct: 14 GHGHVYPSLGLVSELARRGHRITYVTTPL---FADEVKAAGAEVVLYKSEFDTFHVPEVV 70
Query: 86 VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACR--AAADAGIRSVC 143
+ + + V +IL+ E L DLVV DV P AA +V
Sbjct: 71 -KQEDAETQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVR 129
Query: 144 VT 145
+T
Sbjct: 130 LT 131
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 40.7 bits (96), Expect = 0.002
Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 22/203 (10%)
Query: 10 SASSKH-LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF----VFTSEIQS 64
+ ++ H V A+ HA ++ VVR L +A + +F + +
Sbjct: 4 TTTNPHVAVLAF----PFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHT 59
Query: 65 PRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAP-RKSILKDEVEWLNSIKADLVV 123
+ I+ + G + +E ++ A R+ ++ E + LV
Sbjct: 60 MQCNIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSC-LVA 118
Query: 124 SDVVPVACRAAADAGIRSV--CVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFL 181
+ A AA+ G+ + + + R + E L
Sbjct: 119 DAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYI-----DEIREKIGVSGIQGREDELL 173
Query: 182 IRLPGYCPMPAFRDVIDVPLVVR 204
+PG M R D+ +
Sbjct: 174 NFIPG---MSKVR-FRDLQEGIV 192
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 39.4 bits (92), Expect = 0.005
Identities = 24/158 (15%), Positives = 42/158 (26%), Gaps = 23/158 (14%)
Query: 26 GFGHATRVVEVVRNLISAGHDVHVVTGA-------------------PDFVFTSEIQSPR 66
H +V + +AGH+V VV D V
Sbjct: 30 SKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAGLTAVPVGTDVDLVDFMTHAGHD 89
Query: 67 LFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRK---SILKDEVEWLNSIKADLVV 123
+ LD LT + L ++ ++++ V + + DLV+
Sbjct: 90 IIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVI 149
Query: 124 SDVVPVACRAAADA-GIRSVCVTNFSWDFIYAEYVMAA 160
+ + A AA G + A
Sbjct: 150 WEPLTFAAPIAAAVTGTPHARLLWGPDITTRARQNFLG 187
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG,
structural protein structure initiative, midwest center
for structural genomics; 2.10A {Bacillus halodurans}
Length = 201
Score = 36.3 bits (84), Expect = 0.028
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 14 KHLVFAYYVTGHGFGHAT--RVVEVVRNLISAGHDVHVV 50
KH+ F +TG H T V+ + L+ G V
Sbjct: 8 KHVGFG--LTG---SHCTYHEVLPQMERLVELGAKVTPF 41
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Bacillus cereus}
Length = 207
Score = 34.7 bits (80), Expect = 0.076
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 14 KHLVFAYYVTGHGFGHAT--RVVEVVRNLISAGHDVHVV 50
K + F TG H T V+ + LI+ G +V V
Sbjct: 6 KRIGFG--FTG---SHCTYEEVMPHLEKLIAEGAEVRPV 39
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 35.3 bits (81), Expect = 0.088
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 12/102 (11%)
Query: 848 VCHPIYENF--RVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLGSDGTDRLVQLV 905
+ I +NF K L A + + E + T L QL
Sbjct: 222 IKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLST-DIYTPLLRQLK 280
Query: 906 QEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSE 947
+ Q + AK +G G G + ++ +
Sbjct: 281 EASQDLQ---------AVAKSSGAGGGDCGIALSFDAQSTKT 313
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 35.6 bits (82), Expect = 0.094
Identities = 31/216 (14%), Positives = 56/216 (25%), Gaps = 66/216 (30%)
Query: 655 ASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG-------VMDQMASACGEANKLLA 707
A + DL + H + + M +
Sbjct: 1319 RIAPLRGALATYGLTIDDLGV----ASFHGTSTKANDKNESATINEMMKHLGRSEGNPVI 1374
Query: 708 MVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQ 767
V Q L G H G A GA+M ++ SG++P
Sbjct: 1375 GVFQKF-LTG------------------HPKGAA-------GAWMMNGALQILNSGIIP- 1407
Query: 768 SLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLS-PHRFEALYA--KNIPESIVGEEFSK 824
+ N +N++ ++ +Y+ S + + + A S
Sbjct: 1408 --GNRN-ADNVDKILEQ---------FEYVLYPSKTLKTDGVRAVSIT----------SF 1445
Query: 825 NYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKA 860
+G V+ P Y A + Y + K
Sbjct: 1446 GFGQKGGQAIVVHPD--YLYGA-ITEDRYNEYVAKV 1478
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase,
beta alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 35.0 bits (81), Expect = 0.11
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD 55
TG G ++ L G +V + T A
Sbjct: 33 LQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATR 70
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative
homoserine kinase, THRB, amino-acid biosynthesis,
ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Length = 298
Score = 33.4 bits (77), Expect = 0.32
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 632 ISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHI--VGAPC 689
++++ +P +G+ SS++ VA + LN+ + + ++E H V AP
Sbjct: 72 HHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNV-APA 130
Query: 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722
V+ + + + + IP
Sbjct: 131 -VLGNWVVGAKLDGEDFYVRHLFPDCALIAFIP 162
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 32.6 bits (75), Expect = 0.55
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 28 GHATRVVEVVRNLISAGHDVHVVTGAPD 55
G + V+++ L AGH+V V+ A
Sbjct: 36 GVQSHVLQLAEVLRDAGHEVSVLAPASP 63
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 32.7 bits (75), Expect = 0.65
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 33 VVEVVRNLISAGHDVHVVTGAPD 55
+ + + + GH V V T + +
Sbjct: 20 FMRIASTVAARGHHVRVYTQSWE 42
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 32.1 bits (72), Expect = 1.1
Identities = 37/314 (11%), Positives = 80/314 (25%), Gaps = 64/314 (20%)
Query: 24 GHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADA 83
H FG + +++ + ++ T +P+ + D
Sbjct: 59 EHMFGGISTALKLFEQFDNKKFKKRIIL-------TDATPNPKDLQSFKSFKYVMPEEDK 111
Query: 84 LTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVC 143
++ + K D+ ++ A A +S
Sbjct: 112 DFALQIVPFNDRYNRTIPVA--------------KHDIFIATAWWTAYAAQRIVSWQSDT 157
Query: 144 VTNFSWDFIYAEYVMAAGHHHRSIVWQIAED-YSH---------CEFLIRLPGYCPMPAF 193
+Y G + S + +AE Y + E L + F
Sbjct: 158 YGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNSELLKQYFNNKGYN-F 216
Query: 194 RDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWK------------LKE 241
D + ++ + + + +IL G+P+ + +
Sbjct: 217 TDEYFFQPKINT------TLKNYINDKRQKEKIIL-VYGRPSVKRNAFTLIVEALKIFVQ 269
Query: 242 EYLPSGWKCLVC---GASDSQLPPNF-----IKLPKDAYTPDFMAASDCMLGKIGYGTVS 293
+Y S ++ D L KL + Y D + S + + S
Sbjct: 270 KYDRSNEWKIISVGEKHKDIALGKGIHLNSLGKLTLEDY-ADLLKRSSIGISLMISPHPS 328
Query: 294 ----EALAYKLPFV 303
E + L +
Sbjct: 329 YPPLEMAHFGLRVI 342
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 30.9 bits (69), Expect = 1.4
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 210 RKEVRKELGIEDDVKLLILNFGGQPAG------WKLKEEYLPSGWKCLVCGASDSQLPPN 263
E +EL I+ LI+ FG + + + G D+
Sbjct: 50 SDEFCQEL-IQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTARQYV 108
Query: 264 FIKLPKDAYTPDF--------MAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY 309
+ DF SD ++ G G++ ++L P + D
Sbjct: 109 LMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDS 162
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax,
nucleotide, carbohydrate; 3.10A {Bacillus anthracis}
PDB: 3mbo_A*
Length = 394
Score = 31.1 bits (71), Expect = 1.6
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 28 GHATRVVEVVRNLISAGHDVHVVTGAPDF 56
G E+ + L GH++H +T F
Sbjct: 28 GSGVVGTELGKQLAERGHEIHFITSGLPF 56
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport
protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas
reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Length = 90
Score = 28.7 bits (64), Expect = 2.0
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 528 ACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG--PTFDMDLSD 584
ACH+ + ++ L K AL ++ D G ++ V G +G P + LS+
Sbjct: 16 ACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENG-----KGAMPAWADRLSE 69
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 30.9 bits (70), Expect = 2.0
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 28 GHATRVVEVVRNLISAGHDVHVVTGAPD 55
G V EV L G V ++T
Sbjct: 34 GQLVYVKEVSLALAEMGVQVDIITRRIK 61
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural
genomics, PSI-2, protein structure initiative; 2.90A
{Bacillus thuringiensis serovarkonkukian} SCOP:
a.211.1.1
Length = 223
Score = 30.1 bits (67), Expect = 3.1
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 18 FAYYVTGHGFGHATRVVEVVRNLISA-GHDVHVVTGA 53
+GH + H RV ++ +L G + ++ A
Sbjct: 18 LEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMA 54
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 30.2 bits (68), Expect = 3.6
Identities = 37/315 (11%), Positives = 74/315 (23%), Gaps = 53/315 (16%)
Query: 28 GHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQAD--ALT 85
G +V + L G D + PD+ +V + V A
Sbjct: 12 GDTEPLVALAARLRELGADARMCLP-PDY---------VERCAEVGVPMVPVGRAVRAGA 61
Query: 86 VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADA----GIRS 141
+ +E + D VV+ + A A GI
Sbjct: 62 REPGELPPGAAEVVTEVVAEWFDKVPAAIEG--CDAVVTTGLLPAAVAVRSMAEKLGIPY 119
Query: 142 VCVTNFSWDFIYAEYVMAAGHHHRSIVWQI-------------------AEDYSHCEFLI 182
+ +E A + ++ DY + +
Sbjct: 120 RYTVLSPD-HLPSEQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPW 178
Query: 183 RLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELG--IEDDVKLLILNFGGQPAGWKLK 240
P + + ++ + EL + + + FG PA +
Sbjct: 179 LAADPVLSPLRPTDLGTVQTGAWILPDQRPLSAELEGFLRAGSPPVYVGFGSGPAPAEAA 238
Query: 241 EEYL----PSGWKCLVC----GASDSQLPPNFIKLPKDAYTP--DFMAASDCMLGKIGYG 290
+ G + ++ G + + + ++ G G
Sbjct: 239 RVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVG---EVNHQVLFGRVAAVVHHGGAG 295
Query: 291 TVSEALAYKLPFVFV 305
T + P V V
Sbjct: 296 TTTAVTRAGAPQVVV 310
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.45A {Uncultured
thermotogales bacterium} SCOP: a.211.1.1
Length = 220
Score = 29.3 bits (65), Expect = 4.6
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 23 TGHGFGHATRVVEVVRNLISA-GHDVHVVTGA 53
H H RV+E + S D+ A
Sbjct: 31 PAHDISHTFRVMENASEIASREKCDLQKAIIA 62
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein,
structural genomics, PSI-2, protein structure
initiative; 3.30A {Escherichia coli k-12}
Length = 239
Score = 29.4 bits (65), Expect = 5.0
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 18 FAYYVTGHGFGHATRVVEVVRNLISA-GHDVHVVTGA 53
+ H H RV + L + D+ V+ A
Sbjct: 18 HQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTA 54
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism,
monoterpenoid indole alkaloids, PNAE, hydrolase, serine
esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB:
2wfm_A 3gzj_A*
Length = 264
Score = 29.1 bits (65), Expect = 6.2
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 5 ETDGVSASSKHLVFAYYVTGHGFGHATRV-VEVVRNLISAGHDVHVVT 51
+ + KH V HG + ++ L SAGH V V
Sbjct: 2 HSAANAKQQKHFVLV-----HGGCLGAWIWYKLKPLLESAGHKVTAVD 44
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center
for structural genomics of infec diseases, csgid,
oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus}
Length = 175
Score = 28.7 bits (65), Expect = 6.2
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 35 EVVRNLISAGHDVHVV--TGAPDFV 57
+ L S +V+V+ T F+
Sbjct: 23 HYIIELKSKFDEVNVIASTNGRKFI 47
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP}
SCOP: c.34.1.1
Length = 194
Score = 28.7 bits (65), Expect = 6.7
Identities = 5/25 (20%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 35 EVVRNLISAGHDVHVV--TGAPDFV 57
+ S ++ VV A D +
Sbjct: 26 SYLLYFKSFFKEIRVVMTKTAEDLI 50
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 28.9 bits (65), Expect = 8.7
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 22/140 (15%)
Query: 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKW-----AAYVAGTILVLMTELGVRFE 629
GP M+ ++ + G+ M + +Y T ++ Y+ + E ++
Sbjct: 1 GPLGSMEPEEYRERGREMV-DYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWD 59
Query: 630 DSISMLVSSAVPEGKGVSS-------SASVEVASMSA--IAAAHGLNIHPRDLALLCQKV 680
+ +P S A S+ +A A + C ++
Sbjct: 60 SIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTEL 119
Query: 681 ENHIVGAPCGVMDQMASACG 700
E + VMD +A G
Sbjct: 120 EMN-------VMDWLAKMLG 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,292,834
Number of extensions: 992818
Number of successful extensions: 2753
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2705
Number of HSP's successfully gapped: 96
Length of query: 953
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 850
Effective length of database: 3,825,930
Effective search space: 3252040500
Effective search space used: 3252040500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.8 bits)