Your job contains 1 sequence.
>002207
MTSLAFSSSFSFLRNDAVGGITFRSPKVLSRNRKLKLKKSACRYATKTTSLGVEGARASA
EVLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN
LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGG
IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF
VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS
EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP
RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD
INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSK
PTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSS
GMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLV
EGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEG
VPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSK
LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP
PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV
KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV
NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002207
(953 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2097648 - symbol:AT3G08840 species:3702 "Arabi... 3135 0. 1
TIGR_CMR|CHY_1346 - symbol:CHY_1346 "D-alanine--D-alanine... 189 4.8e-25 3
UNIPROTKB|P0A6J8 - symbol:ddlA species:83333 "Escherichia... 215 6.3e-20 2
TIGR_CMR|CBU_1338 - symbol:CBU_1338 "D-alanine--D-alanine... 184 2.2e-18 2
TIGR_CMR|GSU_3066 - symbol:GSU_3066 "D-alanine--D-alanine... 157 4.2e-18 3
TIGR_CMR|CPS_4463 - symbol:CPS_4463 "D-alanine--D-alanine... 177 3.5e-17 3
UNIPROTKB|P07862 - symbol:ddlB species:83333 "Escherichia... 159 3.8e-17 3
TIGR_CMR|BA_2610 - symbol:BA_2610 "D-alanine--D-alanine l... 159 2.1e-13 3
UNIPROTKB|P95114 - symbol:ddl "D-alanine--D-alanine ligas... 178 1.1e-12 2
TIGR_CMR|SPO_1201 - symbol:SPO_1201 "D-alanine--D-alanine... 137 9.6e-12 3
UNIPROTKB|Q8EEZ2 - symbol:ddl "D-alanine--D-alanine ligas... 128 2.1e-11 2
TIGR_CMR|SO_2217 - symbol:SO_2217 "D-alanine--D-alanine l... 128 2.1e-11 2
UNIPROTKB|Q9KM17 - symbol:ddl "D-alanine--D-alanine ligas... 130 6.4e-11 2
TIGR_CMR|VC_A0572 - symbol:VC_A0572 "D-alanine--D-alanine... 130 6.4e-11 2
TIGR_CMR|CJE_0889 - symbol:CJE_0889 "D-alanine--D-alanine... 163 1.1e-08 1
>TAIR|locus:2097648 [details] [associations]
symbol:AT3G08840 species:3702 "Arabidopsis thaliana"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005618 "cell wall"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008716
"D-alanine-D-alanine ligase activity" evidence=IEA;ISS] [GO:0016874
"ligase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 InterPro:IPR016185
GO:GO:0005524 GO:GO:0005618 GO:GO:0009507 EMBL:CP002686
GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 GO:GO:0009252 GO:GO:0008716
InterPro:IPR000291 PANTHER:PTHR23132 PROSITE:PS00843
PROSITE:PS00844 IPI:IPI00534138 RefSeq:NP_974258.1 UniGene:At.40214
ProteinModelPortal:F4IYI8 SMR:F4IYI8 PRIDE:F4IYI8
EnsemblPlants:AT3G08840.2 GeneID:820031 KEGG:ath:AT3G08840
OMA:MSGTNVW ArrayExpress:F4IYI8 Uniprot:F4IYI8
Length = 937
Score = 3135 (1108.6 bits), Expect = 0., P = 0.
Identities = 623/905 (68%), Positives = 729/905 (80%)
Query: 51 LGVEGARASAEVLEDQTMAKEARGG----RVLRVGLICGGPSAERGISLNSARSVLDHIQ 106
LG+ R S + +T++K G + LRVGLICGGPSAERGISLNSARSVLDHIQ
Sbjct: 50 LGMNKYRGSGAI---RTVSKAVGYGQEMSKSLRVGLICGGPSAERGISLNSARSVLDHIQ 106
Query: 107 GDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDI 166
GD + V CYYID +L A+AISSAQVYSNTP+DFDFKLESLAQGF SLSE AEHL + VDI
Sbjct: 107 GDGINVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGFSSLSELAEHLVSAVDI 166
Query: 167 VFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL 226
VFP IHGRFGEDGGIQE+LE +N+PFVGTGSR C +AFDKY+ASLE+ + GF+TVP++L+
Sbjct: 167 VFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLV 226
Query: 227 QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI 286
QG+ V++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV DS+KKA +ILEGI
Sbjct: 227 QGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGI 286
Query: 287 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 346
DDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G D +E +AIF+YRR
Sbjct: 287 DDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGIGDPKE-NAIFDYRR 345
Query: 347 KYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 406
KYLPTQQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW+L ++++ S
Sbjct: 346 KYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSE 405
Query: 407 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYN 466
G T+ G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRTI+ ACSRFP+L YN
Sbjct: 406 TLGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIVHRACSRFPHLDWYN 465
Query: 467 SVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIE 526
S L GS E E ++VFVIFGGDTSERQVS+MSGTNVW+NLQ + D+
Sbjct: 466 YGYSQL---LQGSTTLEV---SEDPQKVFVIFGGDTSERQVSVMSGTNVWVNLQRYVDLN 519
Query: 527 VTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAA 586
VTPCLL+ S+ S G +N+ +R VW LPYS+VLRHT EEVLAAC+EA+EP RA
Sbjct: 520 VTPCLLSPSLSNSLGASSNL-----DNREVWVLPYSVVLRHTAEEVLAACLEAVEPVRAL 574
Query: 587 FTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGI 646
FTS L+ QV+ DL++G K SWF GFDI DELP ++S+ EWIK AKE QATVFIAVHGGI
Sbjct: 575 FTSLLQKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGI 634
Query: 647 GEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLL 706
GEDGTLQ LLE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+ TI+KDV+R ED++
Sbjct: 635 GEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIM 694
Query: 707 KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNS 766
++W EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV+AL++C+ RIPPN+
Sbjct: 695 HETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNT 754
Query: 767 FSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIG 826
S+ HGMIEMPNP PE LIFEPFVETDEI+ SS K +L WKG RWVE+TVGVIG
Sbjct: 755 LSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWKGRRRWVEMTVGVIG 810
Query: 827 KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN 886
K GSMHSL PS+TVKESGDILSLEEKFQGGTGINLTPPP +IMS EAL++CKQ IELIA
Sbjct: 811 KRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPPPTIMSKEALERCKQGIELIAE 870
Query: 887 ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLD 946
L LEGFSRIDAFV+V+ GEVL+IEVNTVPGMTPSTVLI QAL+EQPPMYP QFFR +L
Sbjct: 871 TLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALAEQPPMYPPQFFRTLLH 930
Query: 947 LGSER 951
L ++R
Sbjct: 931 LATQR 935
>TIGR_CMR|CHY_1346 [details] [associations]
symbol:CHY_1346 "D-alanine--D-alanine ligase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008716 "D-alanine-D-alanine ligase activity" evidence=ISS]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00047 InterPro:IPR005905 InterPro:IPR011095
InterPro:IPR011127 InterPro:IPR011761 InterPro:IPR013815
InterPro:IPR013816 Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975
UniPathway:UPA00219 InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737
GO:GO:0005618 GO:GO:0008360 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 GO:GO:0009252 eggNOG:COG1181
KO:K01921 GO:GO:0008716 InterPro:IPR000291 PANTHER:PTHR23132
TIGRFAMs:TIGR01205 PROSITE:PS00843 PROSITE:PS00844
HOGENOM:HOG000011592 OMA:WREAARY ProtClustDB:PRK01372
RefSeq:YP_360179.1 ProteinModelPortal:Q3ACF5 STRING:Q3ACF5
GeneID:3728690 KEGG:chy:CHY_1346 PATRIC:21275827
BioCyc:CHYD246194:GJCN-1345-MONOMER Uniprot:Q3ACF5
Length = 312
Score = 189 (71.6 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 61/166 (36%), Positives = 89/166 (53%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
N+D F +HG++GEDG IQ +LE ++P+ G+G A A DK + +G I P
Sbjct: 52 NIDFAFIALHGKYGEDGAIQGLLEIMDIPYTGSGILASSLAIDKIMTKKILKAEG-IPTP 110
Query: 223 SFLLQGSEVN---ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAK 279
+++ + N E+ S T KL P VV+K R GS+IG+ + L KA
Sbjct: 111 NYIAFSFDENPNFEAISSEILQTLKL-P----VVIKAPREGSTIGIEFVFSK-QELPKAI 164
Query: 280 GIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEV 325
+LE ID +++VE F+EG E TA VL G+ +PVVL E+
Sbjct: 165 KKVLE-IDKQLLVEEFIEG-VEVTASVL--GNS---NPVVLPLIEI 203
Score = 160 (61.4 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
Identities = 48/148 (32%), Positives = 79/148 (53%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
G+++ ++ M +I E +K KEN FIA+HG GEDG +Q LLE +PYTG G++A
Sbjct: 32 GYNVV-KIDMDRNIAETLK--KENIDFAFIALHGKYGEDGAIQGLLEIMDIPYTGSGILA 88
Query: 671 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVK 729
S +DK+ T L A+ G+ T N + D + P + I E+ L+ + +K
Sbjct: 89 SSLAIDKIMTKKILK--AE-GIPTPNY-IAFSFD--ENPNFEAISSEILQTLKLPVV-IK 141
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEE 757
R+G + G+ + ++L +K + E
Sbjct: 142 APREGSTIGIEFVFSKQELPKAIKKVLE 169
Score = 141 (54.7 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 39/134 (29%), Positives = 66/134 (49%)
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP-ASIMSTEALDK 876
VE+T V+G + ++P + + E K+ G ++ PP A +S +A++
Sbjct: 183 VEVTASVLGNSNPV--VLPLIEIVSKTRFYDYEAKYTPGLSEHIIPPRIAPELSQKAIEY 240
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 936
++ + AL GF+R+D ++V E ++EVNT+PGMT +T L A Q +
Sbjct: 241 ARKTYK----ALGCRGFARVDFMIDVRKNEAYVLEVNTIPGMT-ATSLFPDAAKAQGISF 295
Query: 937 PHQFFRKVLDLGSE 950
K+L LG E
Sbjct: 296 -EDLVEKILMLGLE 308
Score = 65 (27.9 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNL 121
+++G+ICGG S+ER +SL + ++ + V +DRN+
Sbjct: 1 MKIGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKIDMDRNI 44
Score = 65 (27.9 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 30/121 (24%), Positives = 50/121 (41%)
Query: 333 VDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391
+++ K ++Y KY P ++ H PPR + E A ++ LG FAR+D
Sbjct: 201 IEIVSKTRFYDYEAKYTPG--LSEHIIPPRIAPELSQKAIEYARKTYKALGCRGFARVD- 257
Query: 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451
F+ + Y +L ++N I GM TS A G S +++ I
Sbjct: 258 -FM-----IDVRKNEAY-------VL--EVNTIPGMTATSLFPDAAKAQGISFEDLVEKI 302
Query: 452 I 452
+
Sbjct: 303 L 303
Score = 54 (24.1 bits), Expect = 3.7e-20, Sum P(3) = 3.7e-20
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNL--QAFNDIEV 527
++ VI GG +SER+VSL +G ++ L + +N +++
Sbjct: 2 KIGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKI 38
>UNIPROTKB|P0A6J8 [details] [associations]
symbol:ddlA species:83333 "Escherichia coli K-12"
[GO:0008716 "D-alanine-D-alanine ligase activity" evidence=IEA;IDA]
[GO:0005618 "cell wall" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0071555 "cell wall organization" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00047 InterPro:IPR005905 InterPro:IPR011095
InterPro:IPR011127 InterPro:IPR011761 InterPro:IPR013815
InterPro:IPR013816 Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975
UniPathway:UPA00219 InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737
GO:GO:0005618 GO:GO:0008360 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
Gene3D:3.30.1490.20 Gene3D:3.30.470.20 Gene3D:3.40.50.20
SUPFAM:SSF52440 EMBL:U73857 GO:GO:0009252 eggNOG:COG1181
EMBL:M58467 PIR:A39182 RefSeq:NP_414915.1 RefSeq:YP_488674.1
ProteinModelPortal:P0A6J8 SMR:P0A6J8 DIP:DIP-47939N IntAct:P0A6J8
PaxDb:P0A6J8 PRIDE:P0A6J8 EnsemblBacteria:EBESCT00000002365
EnsemblBacteria:EBESCT00000017132 GeneID:12932537 GeneID:945313
KEGG:ecj:Y75_p0370 KEGG:eco:b0381 PATRIC:32115903 EchoBASE:EB0209
EcoGene:EG10213 HOGENOM:HOG000011593 KO:K01921 OMA:LLHGPFG
ProtClustDB:PRK01966 BioCyc:EcoCyc:DALADALALIGA-MONOMER
BioCyc:ECOL316407:JW0372-MONOMER
BioCyc:MetaCyc:DALADALALIGA-MONOMER DrugBank:DB00260
Genevestigator:P0A6J8 GO:GO:0008716 InterPro:IPR000291
PANTHER:PTHR23132 TIGRFAMs:TIGR01205 PROSITE:PS00843
PROSITE:PS00844 Uniprot:P0A6J8
Length = 364
Score = 215 (80.7 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 80/256 (31%), Positives = 119/256 (46%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN------VDIVFPTIHGRFGEDGGIQEVLE 186
PA + SLAQ G E A N VD++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSATSLAQVPGK-HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+ A DK D + + + + + F+ + N +S V +KL
Sbjct: 122 VANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKLG 179
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ + A + E D +V+VE ++G E V
Sbjct: 180 L---PLFVKPANQGSSVGVSKVTSE-EQYAIAVDLAFE-FDHKVIVEQGIKG-REIECAV 233
Query: 307 L--DVGSGFDCHPVVL 320
L D C +VL
Sbjct: 234 LGNDNPQASTCGEIVL 249
Score = 145 (56.1 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 40/115 (34%), Positives = 55/115 (47%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
R + + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAV 208
Score = 95 (38.5 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 32/133 (24%), Positives = 59/133 (44%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
EI V+G S + + + D + + K+ G + P A ++ E DK +
Sbjct: 228 EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEINDKIR 283
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPH 938
L G +R+D F+ +N EV+I E+NT+PG T + ++ L + +
Sbjct: 284 AIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT--NISMYPKLWQASGLGYT 340
Query: 939 QFFRKVLDLGSER 951
++++L ER
Sbjct: 341 DLITRLIELALER 353
Score = 58 (25.5 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 489 EGIREVFVIFGGDTSERQVSLMSGTNV 515
E +R V ++FGG ++E +VSL S N+
Sbjct: 2 EKLR-VGIVFGGKSAEHEVSLQSAKNI 27
>TIGR_CMR|CBU_1338 [details] [associations]
symbol:CBU_1338 "D-alanine--D-alanine ligase"
species:227377 "Coxiella burnetii RSA 493" [GO:0008716
"D-alanine-D-alanine ligase activity" evidence=ISS] [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009252 eggNOG:COG1181
HOGENOM:HOG000011593 KO:K01921 OMA:LLHGPFG ProtClustDB:PRK01966
GO:GO:0008716 InterPro:IPR000291 PANTHER:PTHR23132
TIGRFAMs:TIGR01205 PROSITE:PS00843 PROSITE:PS00844
RefSeq:NP_820327.2 PDB:3TQT PDBsum:3TQT ProteinModelPortal:Q83BZ9
GeneID:1209244 KEGG:cbu:CBU_1338 PATRIC:17931413
BioCyc:CBUR227377:GJ7S-1329-MONOMER Uniprot:Q83BZ9
Length = 372
Score = 184 (69.8 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 65/257 (25%), Positives = 116/257 (45%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY-SNTP 136
L + ++CGG S E IS+ SA+++++ + L+ +ID Y I +++ +++P
Sbjct: 5 LHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSP 64
Query: 137 ADF--DFKLESLAQGFGSLSEFAEHLAAN-----VDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ + FG ++ + L + D VFP +HG GEDG +Q +LE N
Sbjct: 65 DHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLN 124
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP-N 248
+P+VG ++ +K D + + + G I V + ++ + + LD
Sbjct: 125 LPYVGANVQSSAVCMEK-DLTKTVLRAGGIPVVDW----HTLSPRDATEGVYQRLLDRWG 179
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ ++ VK GSS+ + K K + DDR++VE + G E VL
Sbjct: 180 TSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFR--YDDRLMVEPRIRG-REIECAVL- 235
Query: 309 VGSGFDCHPVVLLPTEV 325
G+G P LP E+
Sbjct: 236 -GNGA---PKASLPGEI 248
Score = 116 (45.9 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
DRLM + R EI V+G G+ + +P + D S + K+ G T
Sbjct: 217 DRLMVEPRIRGREIECAVLGN-GAPKASLPGEIIPHH-DYYSYDAKYLDPNGATTT---T 271
Query: 867 SIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
S+ +E++ K Q+I + A + G +R+D FV +N +VL+ E+NT+PG T
Sbjct: 272 SVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNN-KVLVNEINTIPGFT 324
Score = 114 (45.2 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 40/120 (33%), Positives = 54/120 (45%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF VHG GEDG LQ LLE +PY G V +S CM+K T L A G+ ++
Sbjct: 102 VFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLR--AG-GIPVVDW 158
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
D + ++ L + L VK G S VA L + T + KA++E
Sbjct: 159 HTLSPRDATE----GVYQRLLDRWGTSELFVKAVSLGSS--VATLPVKTE-TEFTKAVKE 211
Score = 49 (22.3 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQA 521
+ V+ GG ++E ++S+ S N+ L A
Sbjct: 7 ISVLCGGQSTEHEISIQSAKNIVNTLDA 34
Score = 38 (18.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 14/60 (23%), Positives = 21/60 (35%)
Query: 399 HVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
H + + T +L +IN I G S + G N+L +I A R
Sbjct: 295 HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAIDR 354
>TIGR_CMR|GSU_3066 [details] [associations]
symbol:GSU_3066 "D-alanine--D-alanine ligase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008716
"D-alanine-D-alanine ligase activity" evidence=ISS] [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009252 eggNOG:COG1181 KO:K01921
GO:GO:0008716 InterPro:IPR000291 PANTHER:PTHR23132
TIGRFAMs:TIGR01205 PROSITE:PS00843 PROSITE:PS00844
HOGENOM:HOG000011592 RefSeq:NP_954108.1 HSSP:P07862
ProteinModelPortal:Q748D8 GeneID:2686321 KEGG:gsu:GSU3066
PATRIC:22028983 OMA:KYTEGFA ProtClustDB:CLSK829085
BioCyc:GSUL243231:GH27-3015-MONOMER Uniprot:Q748D8
Length = 316
Score = 157 (60.3 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 51/138 (36%), Positives = 75/138 (54%)
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
D+ +LP + + EWI +A FI +HG GEDGT+Q LLE G+PYTG GV+AS
Sbjct: 47 DVGRDLP-QVLVREWIDVA-------FICLHGRYGEDGTVQGLLELMGIPYTGSGVLASA 98
Query: 673 TCMDKVATSLALNHLADLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
M+K+ +A A G LTI + VRR E + P+ + + + VKP
Sbjct: 99 LAMNKI---VAKEVFAARG-LTIAPYRVVRRGETV--DPVAEGFGY--------PVVVKP 144
Query: 731 ARDGCSTGVARLCCAEDL 748
+++G S GV+ + E+L
Sbjct: 145 SQEGSSVGVSIVKSPEEL 162
Score = 157 (60.3 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 44/145 (30%), Positives = 74/145 (51%)
Query: 164 VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223
+D+ F +HGR+GEDG +Q +LE +P+ G+G A A +K A + +G P
Sbjct: 61 IDVAFICLHGRYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTIAPY 120
Query: 224 FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283
+++ E + ++ F VVVKP++ GSS+GV++ + L A +
Sbjct: 121 RVVRRGETVDP-VAEGF--------GYPVVVKPSQEGSSVGVSIVKSP-EELPSALELAF 170
Query: 284 EGIDDRVVVELFLEGGSEFTAIVLD 308
DD ++VE F++G E +LD
Sbjct: 171 R-YDDDILVERFIKG-REIQIGILD 193
Score = 116 (45.9 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
EI +G++ M ++ + + E K+ G ++ PP ++ E +
Sbjct: 186 EIQIGILDD-----RAMGAIEIVPVNEFYDFEAKYTAGKAEHICPP---VLPAELHRRLL 237
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E AL G+SR+D F+ + GE ++EVNT+PGMT ++L AL E
Sbjct: 238 AEGEAAHRALGCSGYSRVD-FLVTEGGECYLLEVNTLPGMTALSLLPEIALKE 289
Score = 63 (27.2 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQ 106
+ ++G++ GG SAER +SL S +VL +Q
Sbjct: 7 KTTKIGVLMGGLSAEREVSLASGGAVLKALQ 37
Score = 54 (24.1 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQA 521
++ V+ GG ++ER+VSL SG V LQ+
Sbjct: 10 KIGVLMGGLSAEREVSLASGGAVLKALQS 38
Score = 42 (19.8 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKV-GFSHSNILRTII 452
TE G ++N + GM S L + A K G +++ I+
Sbjct: 260 TEGGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLVERIL 302
Score = 41 (19.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 833 SLMPSVTVKESG 844
SL+P + +KESG
Sbjct: 280 SLLPEIALKESG 291
>TIGR_CMR|CPS_4463 [details] [associations]
symbol:CPS_4463 "D-alanine--D-alanine ligase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008716
"D-alanine-D-alanine ligase activity" evidence=ISS] [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009252 eggNOG:COG1181 KO:K01921
GO:GO:0008716 InterPro:IPR000291 PANTHER:PTHR23132
TIGRFAMs:TIGR01205 PROSITE:PS00843 PROSITE:PS00844
HOGENOM:HOG000011592 RefSeq:YP_271111.1 ProteinModelPortal:Q47VR1
STRING:Q47VR1 GeneID:3521671 KEGG:cps:CPS_4463 PATRIC:21471759
OMA:GCRTWGR BioCyc:CPSY167879:GI48-4472-MONOMER Uniprot:Q47VR1
Length = 317
Score = 177 (67.4 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 52/149 (34%), Positives = 78/149 (52%)
Query: 160 LAAN-VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF 218
L +N +D VF +HGR GEDG +Q LE ++P+ G+ + DK + G
Sbjct: 62 LVSNKIDRVFIALHGRGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKACGI 121
Query: 219 ITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKA 278
T P F + VN++E S + N L G+V+VKP GSSIG+ A I L+ A
Sbjct: 122 PTAP-FTV----VNKAEFSTLSLENILADLGGRVMVKPANEGSSIGMAQAK-TIAQLRNA 175
Query: 279 KGIILEGIDDRVVVELFLEGGSEFTAIVL 307
I G D +V++E +++G E+T +L
Sbjct: 176 L-IEAFGFDTQVLLEAWIDG-PEYTVTIL 202
Score = 135 (52.6 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 38/104 (36%), Positives = 52/104 (50%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HG GEDG LQ LE +PYTG V+ S MDKV + G+ T
Sbjct: 70 VFIALHGRGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKAC---GIPTAPF 126
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V K + + +I +L ++ VKPA +G S G+A+
Sbjct: 127 TVVNKAEFSTLSLENILADLGGRVM-----VKPANEGSSIGMAQ 165
Score = 88 (36.0 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 33/115 (28%), Positives = 53/115 (46%)
Query: 817 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
W+ E TV ++G +P++ ++ + E K+Q T P ++
Sbjct: 191 WIDGPEYTVTILGD-----KALPAIHMETPREFYDYEAKYQS-TSTQYHCPCG--LNERD 242
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
++ K NA +G+ R+D N GE I+EVNTVPGMT T L+ +A
Sbjct: 243 ENEIKSLSMKAFNATGAQGWGRVDIMRN-KTGEWQILEVNTVPGMT-ETSLVPKA 295
Score = 70 (29.7 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 484 ALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQ--AFN----DIEVTPC--LLASS 535
AL K+E ++ V++GG+++ER+VSL SG + L+ FN D +V P L+++
Sbjct: 10 ALLKQE---KIAVLYGGNSAEREVSLNSGQAIAKGLEDAGFNVVLIDTKVVPLTDLVSNK 66
Query: 536 ID 537
ID
Sbjct: 67 ID 68
Score = 58 (25.5 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 79 RVGLICGGPSAERGISLNSARSV 101
++ ++ GG SAER +SLNS +++
Sbjct: 16 KIAVLYGGNSAEREVSLNSGQAI 38
Score = 52 (23.4 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKV-GFSHSNILRTII 452
EW IL ++N + GM +TS L +A+KV G + S ++ I+
Sbjct: 274 EW-QIL--EVNTVPGMTETS-LVPKAAKVFGLNFSELVTQIL 311
>UNIPROTKB|P07862 [details] [associations]
symbol:ddlB species:83333 "Escherichia coli K-12"
[GO:0008716 "D-alanine-D-alanine ligase activity"
evidence=IEA;IDA;IMP] [GO:0005618 "cell wall" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0008360 "regulation of cell shape"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009252
"peptidoglycan biosynthetic process" evidence=IEA;IMP] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_00047 InterPro:IPR005905
InterPro:IPR011095 InterPro:IPR011127 InterPro:IPR011761
InterPro:IPR013815 InterPro:IPR013816 Pfam:PF01820 Pfam:PF07478
PROSITE:PS50975 UniPathway:UPA00219 InterPro:IPR016185
GO:GO:0005524 GO:GO:0005737 GO:GO:0005618 GO:GO:0008360 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 GO:GO:0009252 eggNOG:COG1181
EMBL:X55034 KO:K01921 GO:GO:0008716 InterPro:IPR000291
PANTHER:PTHR23132 TIGRFAMs:TIGR01205 PROSITE:PS00843
PROSITE:PS00844 EMBL:M14029 EMBL:K02668 EMBL:X52644 PIR:A30289
RefSeq:NP_414634.1 RefSeq:YP_488397.1 PDB:1IOV PDB:1IOW PDB:2DLN
PDBsum:1IOV PDBsum:1IOW PDBsum:2DLN ProteinModelPortal:P07862
SMR:P07862 IntAct:P07862 PRIDE:P07862
EnsemblBacteria:EBESCT00000001990 EnsemblBacteria:EBESCT00000001991
EnsemblBacteria:EBESCT00000001992 EnsemblBacteria:EBESCT00000001993
EnsemblBacteria:EBESCT00000014433 GeneID:12932120 GeneID:946324
KEGG:ecj:Y75_p0091 KEGG:eco:b0092 PATRIC:32115289 EchoBASE:EB0210
EcoGene:EG10214 HOGENOM:HOG000011592 OMA:WREAARY
ProtClustDB:PRK01372 BioCyc:EcoCyc:DALADALALIGB-MONOMER
BioCyc:ECOL316407:JW0090-MONOMER
BioCyc:MetaCyc:DALADALALIGB-MONOMER ChEMBL:CHEMBL1956
EvolutionaryTrace:P07862 Genevestigator:P07862 Uniprot:P07862
Length = 306
Score = 159 (61.0 bits), Expect = 3.8e-17, Sum P(3) = 3.8e-17
Identities = 46/141 (32%), Positives = 74/141 (52%)
Query: 167 VFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL 226
VF +HGR GEDG +Q +LE +P+ G+G A + DK + L G P L
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117
Query: 227 QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI 286
+E E LS+ + ++ V+VKP+R GSS+G++ ++L+ A + +
Sbjct: 118 TRAEF-EKGLSDKQLA-EISALGLPVIVKPSREGSSVGMSKVVAE-NALQDALRLAFQH- 173
Query: 287 DDRVVVELFLEGGSEFTAIVL 307
D+ V++E +L G EFT +L
Sbjct: 174 DEEVLIEKWLSG-PEFTVAIL 193
Score = 151 (58.2 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 45/107 (42%), Positives = 61/107 (57%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 698 DVRRK--EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R + + L + +I S L + VKP+R+G S G++++
Sbjct: 117 LTRAEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSKV 157
Score = 103 (41.3 bits), Expect = 3.8e-17, Sum P(3) = 3.8e-17
Identities = 38/136 (27%), Positives = 67/136 (49%)
Query: 816 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
+W+ E TV ++G+ ++PS+ ++ SG E K+ P A + +++
Sbjct: 181 KWLSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFCP--AGLEASQ 233
Query: 873 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT S L+ A +
Sbjct: 234 EANL--QALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMT-SHSLVPMA-AR 288
Query: 932 QPPMYPHQFFRKVLDL 947
Q M Q ++L+L
Sbjct: 289 QAGMSFSQLVVRILEL 304
Score = 63 (27.2 bits), Expect = 3.8e-17, Sum P(3) = 3.8e-17
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 79 RVGLICGGPSAERGISLNSARSVL 102
++ ++ GG SAER +SLNS +VL
Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVL 27
Score = 57 (25.1 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQ 520
++ V+ GG ++ER+VSL SG V L+
Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLR 31
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 795 ILFSSQSTNKNADRLMWKGN----SRWVEIT 821
++ S+ S +K +L+W+G + WV +T
Sbjct: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALT 118
>TIGR_CMR|BA_2610 [details] [associations]
symbol:BA_2610 "D-alanine--D-alanine ligase" species:198094
"Bacillus anthracis str. Ames" [GO:0008716 "D-alanine-D-alanine
ligase activity" evidence=ISS] [GO:0009252 "peptidoglycan
biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 GO:GO:0009252 eggNOG:COG1181
KO:K01921 GO:GO:0008716 InterPro:IPR000291 PANTHER:PTHR23132
TIGRFAMs:TIGR01205 PROSITE:PS00843 PROSITE:PS00844
HOGENOM:HOG000011592 ProtClustDB:PRK01372 RefSeq:NP_844972.1
RefSeq:YP_019252.1 RefSeq:YP_028695.1 PDB:3R23 PDB:3R5X PDBsum:3R23
PDBsum:3R5X ProteinModelPortal:Q81Q29 DNASU:1086552
EnsemblBacteria:EBBACT00000009370 EnsemblBacteria:EBBACT00000016993
EnsemblBacteria:EBBACT00000023945 GeneID:1086552 GeneID:2817170
GeneID:2852726 KEGG:ban:BA_2610 KEGG:bar:GBAA_2610 KEGG:bat:BAS2435
OMA:GNEMIAH BioCyc:BANT260799:GJAJ-2500-MONOMER
BioCyc:BANT261594:GJ7F-2586-MONOMER Uniprot:Q81Q29
Length = 304
Score = 159 (61.0 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 44/148 (29%), Positives = 73/148 (49%)
Query: 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFIT 220
A ++D +HG++GEDG +Q LE +P+ G+ + DK + + +G I
Sbjct: 50 AKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEG-IE 108
Query: 221 VPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKG 280
P ++ E+ + E N+ ++LD +VVKP GSS+GV + Y D L
Sbjct: 109 TPDWI----ELTKMEDLNF---DELDKLGFPLVVKPNSGGSSVGVKIVYDK-DELISMLE 160
Query: 281 IILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ E D VV+E +++G E T + D
Sbjct: 161 TVFEW-DSEVVIEKYIKG-EEITCSIFD 186
Score = 125 (49.1 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 42/120 (35%), Positives = 65/120 (54%)
Query: 623 SINEWIKLAKENQATVF--IAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
++NE + L ++ + F +A+HG GEDGT+Q LE+ G+PY+G +++S CMDK +
Sbjct: 39 TLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNIS 98
Query: 681 SLALNHLADLGVLTINK-DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 739
L + G+ T + ++ + EDL + EL KL L VKP G S GV
Sbjct: 99 KKILRYE---GIETPDWIELTKMEDLN-------FDEL-DKLGFP-LVVKPNSGGSSVGV 146
Score = 79 (32.9 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 496 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSID 537
VI GG +SE+QVS+M+G + NL N E+ P L +D
Sbjct: 5 VIMGGVSSEKQVSIMTGNEMIANLDK-NKYEIVPITLNEKMD 45
Score = 77 (32.2 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 22/91 (24%), Positives = 46/91 (50%)
Query: 835 MPSVTVKESGDILSLEEKFQGGTGIN-LTPPPASIMSTEALDKCKQRIELIANALQLEGF 893
+P ++++ + + K+ + I + PA + E ++K AL+ +
Sbjct: 190 LPIISIRHAAEFFDYNAKYDDASTIEEVIELPAELK--ERVNKASLACY---KALKCSVY 244
Query: 894 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+R+D V +G ++EVNT+PGMT +++L
Sbjct: 245 ARVDMMVK--DGIPYVMEVNTLPGMTQASLL 273
Score = 56 (24.8 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
++N + GM Q S L + A G +S +L II
Sbjct: 260 EVNTLPGMTQASLLPKSADAAGIHYSKLLDMII 292
Score = 52 (23.4 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHI 105
+R+G+I GG S+E+ +S+ + ++ ++
Sbjct: 1 MRIGVIMGGVSSEKQVSIMTGNEMIANL 28
>UNIPROTKB|P95114 [details] [associations]
symbol:ddl "D-alanine--D-alanine ligase" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008716 "D-alanine-D-alanine ligase activity" evidence=IDA]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=IPI] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0005618 GO:GO:0008360 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
GO:GO:0006200 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 EMBL:BX842581 GO:GO:0009252
eggNOG:COG1181 HOGENOM:HOG000011593 KO:K01921 OMA:LLHGPFG
ProtClustDB:PRK01966 GO:GO:0008716 InterPro:IPR000291
PANTHER:PTHR23132 TIGRFAMs:TIGR01205 PROSITE:PS00843
PROSITE:PS00844 PIR:B70673 RefSeq:NP_217497.1 RefSeq:NP_337574.1
RefSeq:YP_006516437.1 PDB:3LWB PDBsum:3LWB
ProteinModelPortal:P95114 SMR:P95114 PRIDE:P95114
EnsemblBacteria:EBMYCT00000001897 EnsemblBacteria:EBMYCT00000070336
GeneID:13317778 GeneID:888415 GeneID:925214 KEGG:mtc:MT3059
KEGG:mtu:Rv2981c KEGG:mtv:RVBD_2981c PATRIC:18128492
TubercuList:Rv2981c BioCyc:MetaCyc:MONOMER-15228 ChEMBL:CHEMBL2030
EvolutionaryTrace:P95114 Uniprot:P95114
Length = 373
Score = 178 (67.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 78/258 (30%), Positives = 113/258 (43%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQG---DDLLVRC------YYID 118
M+ R R +RV ++ GG S E IS SA S+L ++ D + V D
Sbjct: 1 MSANDRRDRRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTD 60
Query: 119 RNLNAYAISSA---QVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGR 174
N +A I++ QV S + + + G SL A + +VD+VFP +HG
Sbjct: 61 ANPDALTITNRELPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGP 120
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234
+GEDG IQ +LE VP+VG G A DK ++ G + V ++ + S
Sbjct: 121 YGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADG-LPVGAYAVLRPP--RS 177
Query: 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVEL 294
L + + V VKP R GSSIGV+ D L A D +V+VE
Sbjct: 178 TLHR----QECERLGLPVFVKPARGGSSIGVS-RVSSWDQLPAAVARARRH-DPKVIVEA 231
Query: 295 FLEGGSEFTAIVLDVGSG 312
+ G E VL++ G
Sbjct: 232 AISG-RELECGVLEMPDG 248
Score = 150 (57.9 bits), Expect = 4.8e-11, Sum P(3) = 4.8e-11
Identities = 47/120 (39%), Positives = 60/120 (50%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ VF +HG GEDGT+Q LLE GVPY G GV+AS MDK T L AD G
Sbjct: 108 ESVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLL--AAD-G- 163
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
L + +L+ P + + +L VKPAR G S GV+R+ + L V
Sbjct: 164 LPVGAYA-----VLRPPRSTLHRQECERLGLPVF-VKPARGGSSIGVSRVSSWDQLPAAV 217
Score = 68 (29.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 887 ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
A+ G +R+D F+ D+G V I E+NT+PG T
Sbjct: 308 AIDCRGLARVDFFLT-DDGPV-INEINTMPGFT 338
Score = 55 (24.4 bits), Expect = 4.8e-11, Sum P(3) = 4.8e-11
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 484 ALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQA--FNDIEV--TP 529
A ++R+ V V+FGG ++E +S +S ++ NL + F+ I V TP
Sbjct: 3 ANDRRDRRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITP 52
>TIGR_CMR|SPO_1201 [details] [associations]
symbol:SPO_1201 "D-alanine--D-alanine ligase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008716
"D-alanine-D-alanine ligase activity" evidence=ISS] [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872
Gene3D:3.30.1490.20 Gene3D:3.30.470.20 Gene3D:3.40.50.20
SUPFAM:SSF52440 GO:GO:0009252 eggNOG:COG1181 KO:K01921
GO:GO:0008716 InterPro:IPR000291 PANTHER:PTHR23132
TIGRFAMs:TIGR01205 PROSITE:PS00843 PROSITE:PS00844
HOGENOM:HOG000011592 ProtClustDB:PRK01372 HSSP:P07862
RefSeq:YP_166448.1 ProteinModelPortal:Q5LU57 GeneID:3192915
KEGG:sil:SPO1201 PATRIC:23375711 OMA:VEDASCD Uniprot:Q5LU57
Length = 306
Score = 137 (53.3 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
Identities = 44/156 (28%), Positives = 72/156 (46%)
Query: 154 SEFAEHLAANV-DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLE 212
S+ + L A+ D+VF +HGR+GEDG +Q +LE +P+ +G A A DK E
Sbjct: 50 SDLCDRLRASAPDVVFNALHGRWGEDGCVQGLLEWLRIPYTSSGVLASALAMDK-----E 104
Query: 213 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 272
SK+ + G V S+L++ VVKP GSS+GV Y ++
Sbjct: 105 RSKEAYRAA------GLPVAASQLADRAAIEAAHVMQPPYVVKPYNEGSSVGV---Y-IV 154
Query: 273 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
++ + ++VE ++ G T ++ D
Sbjct: 155 TEAANGPPVLAPDLPATLMVEEYVPGRELSTTVLGD 190
Score = 111 (44.1 bits), Expect = 9.5e-09, Sum P(3) = 9.5e-09
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
GF++ EL + + ++ + + VF A+HG GEDG +Q LLE +PYT GV+A
Sbjct: 40 GFEVV-ELDAGSDLCDRLRASAPD--VVFNALHGRWGEDGCVQGLLEWLRIPYTSSGVLA 96
Query: 671 SKTCMDK 677
S MDK
Sbjct: 97 SALAMDK 103
Score = 103 (41.3 bits), Expect = 7.6e-08, Sum P(3) = 7.6e-08
Identities = 36/102 (35%), Positives = 45/102 (44%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF A+HG GEDG +Q LLE +PYT GV+AS MDK + A A L V
Sbjct: 64 VFNALHGRWGEDGCVQGLLEWLRIPYTSSGVLASALAMDKERSKEAYR-AAGLPVAA--- 119
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 739
L ++ H + VKP +G S GV
Sbjct: 120 -----SQLADRAAIEAAHVMQPPY-----VVKPYNEGSSVGV 151
Score = 74 (31.1 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE--VLIIEVNTVPGMTPST 922
PA + E + C AL G SR D + G + ++E NT PGMTP++
Sbjct: 220 PADL-PPEIFELCLDYALRAHKALGCRGLSRTDFRWDESRGAAGLFLLETNTQPGMTPTS 278
Query: 923 VLIHQALS 930
+ QAL+
Sbjct: 279 LAPEQALA 286
Score = 65 (27.9 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGD 108
+V ++ GGPSAER +SL S R ++G+
Sbjct: 10 KVAVLMGGPSAEREVSLVSGRECAAALRGE 39
Score = 57 (25.1 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 493 EVFVIFGGDTSERQVSLMSG 512
+V V+ GG ++ER+VSL+SG
Sbjct: 10 KVAVLMGGPSAEREVSLVSG 29
Score = 42 (19.8 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 402 SSSETKYGSTEWGTILFT-DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA-CSR 458
S ++ ++ + LF + N GM TS +QA G S + ++ A C R
Sbjct: 248 SRTDFRWDESRGAAGLFLLETNTQPGMTPTSLAPEQALAAGMSFGQLCAWMVEDASCDR 306
>UNIPROTKB|Q8EEZ2 [details] [associations]
symbol:ddl "D-alanine--D-alanine ligase" species:211586
"Shewanella oneidensis MR-1" [GO:0008716 "D-alanine-D-alanine
ligase activity" evidence=ISS] [GO:0009252 "peptidoglycan
biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0009252 eggNOG:COG1181 KO:K01921
ProtClustDB:PRK01966 GO:GO:0008716 InterPro:IPR000291
PANTHER:PTHR23132 TIGRFAMs:TIGR01205 PROSITE:PS00843
PROSITE:PS00844 HOGENOM:HOG000011592 RefSeq:NP_717814.1
ProteinModelPortal:Q8EEZ2 GeneID:1169954 KEGG:son:SO_2217
PATRIC:23524065 OMA:SISSAIC Uniprot:Q8EEZ2
Length = 336
Score = 128 (50.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 59/216 (27%), Positives = 84/216 (38%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+CGG SAE ISL SA + + N+ + Y D D
Sbjct: 8 LLCGGGSAEHDISLLSANYFETSLAKSEQF--------NVLRVVLDKFGQYQTAAGD-DC 58
Query: 142 KLESLAQGFGSLSEFAEHLAAN--VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+L + + F + A VD V P IHG GE G IQ +P+ G S A
Sbjct: 59 ELTNNRE-----IRFRDESKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEA 113
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
F+K A + S G P L ++ ++ ++ T G + VK
Sbjct: 114 SSNCFNKITAKMWFSALGIPNTPYIFL--NQYDDEAIAQ---TQAALEKWGSIFVKAASQ 168
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILE--GIDDRVVVE 293
GSS+G Y V D K G++ + G V+VE
Sbjct: 169 GSSVG---CYKV-DEASKVLGVLKDAFGYAPYVIVE 200
Score = 108 (43.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
E+ V V G + + +P + +S + +EK+ + T A + T+ D+ +
Sbjct: 207 ELEVAVYEYQGEVIATLPGEIICDSNTFYTFDEKYAKSSKAR-TDVVAQNVPTDISDQIR 265
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
++L SRID F+ DN E+L+ E+NT PG TP
Sbjct: 266 AYAIKAFKGMKLRHLSRIDFFLTADN-EILLNEINTFPGSTP 306
Score = 69 (29.3 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 682
V +HG GE G +QS +PY G AS C +K+ +
Sbjct: 81 VIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKM 125
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNL---QAFNDIEVT-----PCLLASSIDCSSGMDAN 545
+ ++ GG ++E +SL+S +L + FN + V A+ DC +
Sbjct: 6 LLLLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNRE 65
Query: 546 ITDPDSSSRVVWSLPYSLVLRH 567
I D S + W + Y + H
Sbjct: 66 IRFRDES-KAPWPVDYVIPCIH 86
>TIGR_CMR|SO_2217 [details] [associations]
symbol:SO_2217 "D-alanine--D-alanine ligase" species:211586
"Shewanella oneidensis MR-1" [GO:0008716 "D-alanine-D-alanine
ligase activity" evidence=ISS] [GO:0009252 "peptidoglycan
biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0009252 eggNOG:COG1181 KO:K01921
ProtClustDB:PRK01966 GO:GO:0008716 InterPro:IPR000291
PANTHER:PTHR23132 TIGRFAMs:TIGR01205 PROSITE:PS00843
PROSITE:PS00844 HOGENOM:HOG000011592 RefSeq:NP_717814.1
ProteinModelPortal:Q8EEZ2 GeneID:1169954 KEGG:son:SO_2217
PATRIC:23524065 OMA:SISSAIC Uniprot:Q8EEZ2
Length = 336
Score = 128 (50.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 59/216 (27%), Positives = 84/216 (38%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+CGG SAE ISL SA + + N+ + Y D D
Sbjct: 8 LLCGGGSAEHDISLLSANYFETSLAKSEQF--------NVLRVVLDKFGQYQTAAGD-DC 58
Query: 142 KLESLAQGFGSLSEFAEHLAAN--VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+L + + F + A VD V P IHG GE G IQ +P+ G S A
Sbjct: 59 ELTNNRE-----IRFRDESKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEA 113
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
F+K A + S G P L ++ ++ ++ T G + VK
Sbjct: 114 SSNCFNKITAKMWFSALGIPNTPYIFL--NQYDDEAIAQ---TQAALEKWGSIFVKAASQ 168
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILE--GIDDRVVVE 293
GSS+G Y V D K G++ + G V+VE
Sbjct: 169 GSSVG---CYKV-DEASKVLGVLKDAFGYAPYVIVE 200
Score = 108 (43.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
E+ V V G + + +P + +S + +EK+ + T A + T+ D+ +
Sbjct: 207 ELEVAVYEYQGEVIATLPGEIICDSNTFYTFDEKYAKSSKAR-TDVVAQNVPTDISDQIR 265
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
++L SRID F+ DN E+L+ E+NT PG TP
Sbjct: 266 AYAIKAFKGMKLRHLSRIDFFLTADN-EILLNEINTFPGSTP 306
Score = 69 (29.3 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 682
V +HG GE G +QS +PY G AS C +K+ +
Sbjct: 81 VIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKM 125
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNL---QAFNDIEVT-----PCLLASSIDCSSGMDAN 545
+ ++ GG ++E +SL+S +L + FN + V A+ DC +
Sbjct: 6 LLLLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNRE 65
Query: 546 ITDPDSSSRVVWSLPYSLVLRH 567
I D S + W + Y + H
Sbjct: 66 IRFRDES-KAPWPVDYVIPCIH 86
>UNIPROTKB|Q9KM17 [details] [associations]
symbol:ddl "D-alanine--D-alanine ligase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008716
"D-alanine-D-alanine ligase activity" evidence=ISS] [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0009252 eggNOG:COG1181 KO:K01921
ProtClustDB:PRK01966 GO:GO:0008716 InterPro:IPR000291
PANTHER:PTHR23132 TIGRFAMs:TIGR01205 PROSITE:PS00843
PROSITE:PS00844 PIR:A82443 RefSeq:NP_232962.1
ProteinModelPortal:Q9KM17 DNASU:2612376 GeneID:2612376
KEGG:vch:VCA0572 PATRIC:20085698 OMA:SAANIFR Uniprot:Q9KM17
Length = 334
Score = 130 (50.8 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 59/214 (27%), Positives = 92/214 (42%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+CGG S+E ISL SA + ++ L +++ R + +S A
Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLE----LTPEFHVIR----VEMKKEGWFSEQGA---- 55
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
L L +L+ ++ + +D V P IHG GE G IQ +LE +P++G G A
Sbjct: 56 -LVYLDTNSATLN--SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASA 112
Query: 202 QAFDKYDASLEMSKQGFITVPS-FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
+F+K + L P FL Q + + + F + G + VK R G
Sbjct: 113 NSFNKITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAF------GHWGSIFVKAARQG 166
Query: 261 SSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVE 293
SS+G Y V + A I G ++V+VE
Sbjct: 167 SSVG---CYKVTTEDQIAPAIEAAFGFSEQVLVE 197
Score = 101 (40.6 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL-DKC 877
E+ V G ++ P + G S EEK+ + +++ E L +K
Sbjct: 204 ELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR------TVLEAENLTEKH 257
Query: 878 KQRIELIANA----LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
K+ I+ A ++L SRID F+ + G++ + EVNT PGMTP
Sbjct: 258 KELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTP 303
Score = 94 (38.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 603 LKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIA--VHGGIGEDGTLQSLLEAEG 660
+KK WF+ L + + + K + F+ +HG GE G +QS+LE G
Sbjct: 44 MKKEGWFSE---QGALVYLDTNSATLNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAG 100
Query: 661 VPYTGPGVMASKTCMDKVATSL 682
+PY G G AS +K+ + L
Sbjct: 101 IPYLGCGPEASANSFNKITSKL 122
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEV 527
+ ++ GG +SE ++SL+S + L+ + V
Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHV 39
>TIGR_CMR|VC_A0572 [details] [associations]
symbol:VC_A0572 "D-alanine--D-alanine ligase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008716 "D-alanine-D-alanine
ligase activity" evidence=ISS] [GO:0009252 "peptidoglycan
biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0009252 eggNOG:COG1181 KO:K01921
ProtClustDB:PRK01966 GO:GO:0008716 InterPro:IPR000291
PANTHER:PTHR23132 TIGRFAMs:TIGR01205 PROSITE:PS00843
PROSITE:PS00844 PIR:A82443 RefSeq:NP_232962.1
ProteinModelPortal:Q9KM17 DNASU:2612376 GeneID:2612376
KEGG:vch:VCA0572 PATRIC:20085698 OMA:SAANIFR Uniprot:Q9KM17
Length = 334
Score = 130 (50.8 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 59/214 (27%), Positives = 92/214 (42%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+CGG S+E ISL SA + ++ L +++ R + +S A
Sbjct: 8 LLCGGGSSEHEISLVSANYIQQQLE----LTPEFHVIR----VEMKKEGWFSEQGA---- 55
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
L L +L+ ++ + +D V P IHG GE G IQ +LE +P++G G A
Sbjct: 56 -LVYLDTNSATLN--SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASA 112
Query: 202 QAFDKYDASLEMSKQGFITVPS-FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
+F+K + L P FL Q + + + F + G + VK R G
Sbjct: 113 NSFNKITSKLWYDALDIPNTPYLFLTQNTPSSIDKAKQAF------GHWGSIFVKAARQG 166
Query: 261 SSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVE 293
SS+G Y V + A I G ++V+VE
Sbjct: 167 SSVG---CYKVTTEDQIAPAIEAAFGFSEQVLVE 197
Score = 101 (40.6 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL-DKC 877
E+ V G ++ P + G S EEK+ + +++ E L +K
Sbjct: 204 ELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR------TVLEAENLTEKH 257
Query: 878 KQRIELIANA----LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
K+ I+ A ++L SRID F+ + G++ + EVNT PGMTP
Sbjct: 258 KELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTP 303
Score = 94 (38.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 603 LKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIA--VHGGIGEDGTLQSLLEAEG 660
+KK WF+ L + + + K + F+ +HG GE G +QS+LE G
Sbjct: 44 MKKEGWFSE---QGALVYLDTNSATLNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAG 100
Query: 661 VPYTGPGVMASKTCMDKVATSL 682
+PY G G AS +K+ + L
Sbjct: 101 IPYLGCGPEASANSFNKITSKL 122
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEV 527
+ ++ GG +SE ++SL+S + L+ + V
Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHV 39
>TIGR_CMR|CJE_0889 [details] [associations]
symbol:CJE_0889 "D-alanine--D-alanine ligase"
species:195099 "Campylobacter jejuni RM1221" [GO:0008716
"D-alanine-D-alanine ligase activity" evidence=ISS] [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] HAMAP:MF_00047
InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127
InterPro:IPR011761 InterPro:IPR013815 InterPro:IPR013816
Pfam:PF01820 Pfam:PF07478 PROSITE:PS50975 UniPathway:UPA00219
InterPro:IPR016185 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0008360 GO:GO:0046872 Gene3D:3.30.1490.20 Gene3D:3.30.470.20
Gene3D:3.40.50.20 SUPFAM:SSF52440 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0009252 eggNOG:COG1181 KO:K01921
ProtClustDB:PRK01966 GO:GO:0008716 InterPro:IPR000291
PANTHER:PTHR23132 TIGRFAMs:TIGR01205 PROSITE:PS00843
PROSITE:PS00844 RefSeq:YP_178891.1 ProteinModelPortal:Q5HUZ4
SMR:Q5HUZ4 STRING:Q5HUZ4 GeneID:3231402 KEGG:cjr:CJE0889
PATRIC:20043545 HOGENOM:HOG000102494 OMA:IMIRASD
BioCyc:CJEJ195099:GJC0-909-MONOMER Uniprot:Q5HUZ4
Length = 346
Score = 163 (62.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 67/229 (29%), Positives = 107/229 (46%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++ ++ GG S E IS+ SA VL + +L + D Y I S ++ S T +
Sbjct: 1 MKFAILFGGNSYEHEISIVSA-VVLKKVINQNL--EFIFCDEERRFYHIPSEKMNSKTFS 57
Query: 138 DFDFKLES---LAQGFGSLSE-FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
+K E + QG G S+ F + + V IHGR GEDG I + E Y++ F+
Sbjct: 58 TKAYKKEKELFIKQG-GFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFI 116
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G A +F+K L G T+ +++ + ++ +LS F P +
Sbjct: 117 GPRLEASVLSFNKELTKLYAKSVGVKTLDYTMVRKGQNSKEKLS--F------P----CI 164
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
+KP R GSSIG+++ D L+ AK + E D+ +VVE F E+
Sbjct: 165 IKPARLGSSIGISIVKDEKD-LEYAKDVGFE-FDNDLVVEEFKNNIKEY 211
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 953 940 0.00093 122 3 11 22 0.40 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 627 (67 KB)
Total size of DFA: 433 KB (2208 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 79.33u 0.12s 79.45t Elapsed: 00:00:03
Total cpu time: 79.34u 0.12s 79.46t Elapsed: 00:00:03
Start: Sat May 11 01:49:15 2013 End: Sat May 11 01:49:18 2013