BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002207
(953 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225439600|ref|XP_002265851.1| PREDICTED: uncharacterized protein LOC100265424 [Vitis vinifera]
gi|297735584|emb|CBI18078.3| unnamed protein product [Vitis vinifera]
Length = 952
Score = 1472 bits (3812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/904 (78%), Positives = 787/904 (87%), Gaps = 2/904 (0%)
Query: 52 GVEGARASAEVLEDQTMAKEA--RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDD 109
GV RA+ EV+ D + +E GRVLRVG+ICGGPSAERGISLNSARSV+DHIQGDD
Sbjct: 49 GVGVVRAATEVVVDDPVVREGGKEKGRVLRVGVICGGPSAERGISLNSARSVIDHIQGDD 108
Query: 110 LLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFP 169
LLV CYYID NLNAYAIS AQVYSNTP DFDFKLESLAQGF SLS+FAEHLAA+VDIVFP
Sbjct: 109 LLVSCYYIDCNLNAYAISPAQVYSNTPTDFDFKLESLAQGFRSLSDFAEHLAASVDIVFP 168
Query: 170 TIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229
IHGRFGEDGGIQE+LEK N+PFVGT S CRQAFDKYD+SLE+ +QGF+T+P+FL+QGS
Sbjct: 169 VIHGRFGEDGGIQELLEKSNIPFVGTRSNECRQAFDKYDSSLELDRQGFVTLPNFLVQGS 228
Query: 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR 289
NESELS WF N LD NSGKVVVKPTRAGSSIGVTVAYGV DSLKKA II EGIDDR
Sbjct: 229 HSNESELSKWFAENHLDTNSGKVVVKPTRAGSSIGVTVAYGVADSLKKANEIIAEGIDDR 288
Query: 290 VVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL 349
V+VE+FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVE+Q + D+REKDAIFNYRRKYL
Sbjct: 289 VLVEIFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEIQLHDNADMREKDAIFNYRRKYL 348
Query: 350 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409
PTQQVAYHTPPRFP+ VI SIREGASLLFQRLGL DFARIDGWFLPSS + S+SE K G
Sbjct: 349 PTQQVAYHTPPRFPMDVIGSIREGASLLFQRLGLHDFARIDGWFLPSSILIPSASEKKLG 408
Query: 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVS 469
T+ GT++FTDINLISGMEQTSFLFQQASKVGFSHSNILR+II AC RFPNLASY S+S
Sbjct: 409 RTKSGTVIFTDINLISGMEQTSFLFQQASKVGFSHSNILRSIIQRACLRFPNLASYTSLS 468
Query: 470 SHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTP 529
+ LP RS S+ EA K + +R+VFVIFGGDTSERQVSLMSGTNVWLNLQAFND+EV P
Sbjct: 469 NLLPRRSKSSQLIEAFPKTKDVRKVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDLEVIP 528
Query: 530 CLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTS 589
CLLA + SS D + + D + +W+LPYSLVLRHTTEEVLAACIEAIEPDRAA TS
Sbjct: 529 CLLAPTSGYSSKTDMDEKELDVRMKTIWTLPYSLVLRHTTEEVLAACIEAIEPDRAALTS 588
Query: 590 HLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649
LRNQV+NDL+EGLKK WFTGFD+ADE P+R+S+ +W+KLAKE QATVFIAVHGG+GED
Sbjct: 589 ELRNQVMNDLMEGLKKQHWFTGFDLADEPPVRYSVEQWVKLAKEVQATVFIAVHGGMGED 648
Query: 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709
GTLQ LLEA GVPYTGPGV SK CMDKVATSLALNHL GVLTINK V RKEDLL P
Sbjct: 649 GTLQFLLEAGGVPYTGPGVETSKICMDKVATSLALNHLEKFGVLTINKKVLRKEDLLNAP 708
Query: 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSR 769
+ DIWH+LTSKLQ +TLCVKPARDGCSTGVARLCC EDL VYVKALEEC LRIP NS S+
Sbjct: 709 VHDIWHDLTSKLQSETLCVKPARDGCSTGVARLCCLEDLAVYVKALEECFLRIPSNSLSK 768
Query: 770 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG 829
AHG+IEMP+PPPE+LIFEPF+ETDEI+ SS + N A+RL+W+G+SRWVE+TVGV+GK G
Sbjct: 769 AHGVIEMPSPPPELLIFEPFIETDEIIVSSNAVNDTANRLIWEGHSRWVEVTVGVVGKRG 828
Query: 830 SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889
SMHSL PSVTVKESGDILSLEEKFQGGTGINLTPPP SI+S AL+ CKQRIELIAN LQ
Sbjct: 829 SMHSLTPSVTVKESGDILSLEEKFQGGTGINLTPPPLSIISKAALESCKQRIELIANTLQ 888
Query: 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949
LEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPSTVLIHQAL+E+PPMYPH+FFR +LDLGS
Sbjct: 889 LEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEEPPMYPHRFFRTLLDLGS 948
Query: 950 ERFL 953
ERF+
Sbjct: 949 ERFI 952
>gi|224091078|ref|XP_002309171.1| predicted protein [Populus trichocarpa]
gi|222855147|gb|EEE92694.1| predicted protein [Populus trichocarpa]
Length = 931
Score = 1461 bits (3781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/957 (74%), Positives = 812/957 (84%), Gaps = 38/957 (3%)
Query: 4 LAFSSSFSFL-----RNDAVG-GITFRSPKVLSRNRKLKLKKSACRYATKTTSLGVEGAR 57
L+F+S SFL +NDAVG + F +P NRK +C T+ + +GV A
Sbjct: 6 LSFASKLSFLHNGNYKNDAVGRNLLFDNPNSYKWNRKFS---DSCFSKTRCSGVGVTRAA 62
Query: 58 ASAE-VLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116
++ E V+++ ++KE RVLRVGLICGGPSAERGISLNSARSVLDHI+GDDL V CYY
Sbjct: 63 STTEAVVDNNRVSKE--DSRVLRVGLICGGPSAERGISLNSARSVLDHIEGDDLQVSCYY 120
Query: 117 IDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFG 176
ID ++NA+AISSAQVYSNTPADFDFKLESLA+GF SL EFAEHLAA+VDIVFP IHGRFG
Sbjct: 121 IDYDMNAFAISSAQVYSNTPADFDFKLESLAKGFSSLDEFAEHLAASVDIVFPVIHGRFG 180
Query: 177 EDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236
EDGGIQE+LE++NVPFVGTGSR CR+AFDKYDASLE+SKQGFITVPSFL+QGSE+ E EL
Sbjct: 181 EDGGIQELLERHNVPFVGTGSRECRKAFDKYDASLELSKQGFITVPSFLVQGSEIEECEL 240
Query: 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL 296
S WF +N+LDPNSGKVVVKP RAGSSIGVTVAYGV DSLKKA +I EGIDD+++VE+FL
Sbjct: 241 SKWFTSNQLDPNSGKVVVKPARAGSSIGVTVAYGVSDSLKKANDLISEGIDDKILVEIFL 300
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
EGGSEFTAIVLDVGSGFDCHPVVLLPTEVE+QF GSVDVRE+DAIFNYRRKYLPTQQVAY
Sbjct: 301 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVEIQFHGSVDVREEDAIFNYRRKYLPTQQVAY 360
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
HTPPRFP+ VI +IREGAS+LF++LGL DFARIDGWFLP+S H SSS K+G TE GTI
Sbjct: 361 HTPPRFPLKVIENIREGASILFRQLGLRDFARIDGWFLPNSMHALSSSAGKFGRTELGTI 420
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRS 476
++ DINLISGMEQTSFLFQQASKVGFSHSNILR++I AC RFPNLAS+N VS+HLP RS
Sbjct: 421 IYNDINLISGMEQTSFLFQQASKVGFSHSNILRSVIHRACLRFPNLASHNEVSAHLPRRS 480
Query: 477 SGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSI 536
EA NKREGIR++FV+FGGDTSERQVSLMSGTNVWLNL AF++ + L
Sbjct: 481 KSLPFDEAFNKREGIRKIFVLFGGDTSERQVSLMSGTNVWLNLLAFDETTI----LMMVP 536
Query: 537 DCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVV 596
+C YSLVLRHTTEEVL ACIEAIEP +AA TSHLRNQV+
Sbjct: 537 EC----------------------YSLVLRHTTEEVLDACIEAIEPAQAALTSHLRNQVM 574
Query: 597 NDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLL 656
NDL+E LKKHSWFTGFDIADE P+R+S+ +W+KLAKE QATVFIAVHGGIGEDGTLQSLL
Sbjct: 575 NDLMECLKKHSWFTGFDIADEQPVRYSLEKWVKLAKEVQATVFIAVHGGIGEDGTLQSLL 634
Query: 657 EAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHE 716
E+EGVP+TGPG ASKTCMDKVATSLAL+HLADLG+LTINKDV RKEDLL P ++IW E
Sbjct: 635 ESEGVPHTGPGAAASKTCMDKVATSLALSHLADLGILTINKDVCRKEDLLNMPALEIWDE 694
Query: 717 LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEM 776
L SKLQC+TLCVKPARDGCSTGVARLCC EDL VY+KAL++CLLRIPP+SFS++HGMIEM
Sbjct: 695 LISKLQCETLCVKPARDGCSTGVARLCCVEDLAVYIKALKDCLLRIPPDSFSKSHGMIEM 754
Query: 777 PNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 836
P+PPPE LIFEPF+ETDEI+ SS+S + A L+WKGNSRWVEITVGVIG GSM SL P
Sbjct: 755 PSPPPERLIFEPFIETDEIVVSSKSGGEKAQGLVWKGNSRWVEITVGVIGTLGSMRSLSP 814
Query: 837 SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRI 896
SVTVKE+GDILSLEEKFQGGTGINLTPPPASI+S EAL++CK RIELIAN LQLEGFSRI
Sbjct: 815 SVTVKETGDILSLEEKFQGGTGINLTPPPASIVSNEALERCKHRIELIANTLQLEGFSRI 874
Query: 897 DAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
DAF+NVD+GEVLIIEVNTVPGMTPSTVLIHQAL+EQPPMYPH+FFR +LDL SER +
Sbjct: 875 DAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQPPMYPHKFFRTLLDLASERII 931
>gi|255586280|ref|XP_002533792.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
gi|223526281|gb|EEF28594.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
Length = 1000
Score = 1448 bits (3748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/960 (75%), Positives = 809/960 (84%), Gaps = 21/960 (2%)
Query: 1 MTSLAFSSSFSFLRNDAVGGITFRSPKVLSRNRK------LKLKKSACRYATKTTSLGVE 54
M SLAF+S S LR+ + R V R R KLK ++ LGV
Sbjct: 1 MASLAFTSKLSSLRSASNHN---RHGVVACRTRSNLLHLDCKLKSNSISCLKNPQCLGVG 57
Query: 55 GARASAEV-LEDQTMAKEA--RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLL 111
RA+A+V ++D+ + E G RVL+VGLICGGPSAERGISLNSARSVLDHIQG+DL
Sbjct: 58 VTRAAADVAVDDRVLQNEKAEEGNRVLKVGLICGGPSAERGISLNSARSVLDHIQGEDLH 117
Query: 112 VRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTI 171
V CYYID LNAYAIS AQVYSNTPADFDFKLESLA+ F SLSEFAEHLAA+VDIVFP I
Sbjct: 118 VSCYYIDYELNAYAISPAQVYSNTPADFDFKLESLARQFSSLSEFAEHLAASVDIVFPVI 177
Query: 172 HGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231
HGRFGEDGGIQE+LE YN+PFVGTGS CRQAFDKY AS+E+SK+GFITVP+FL+QG E
Sbjct: 178 HGRFGEDGGIQELLENYNIPFVGTGSSECRQAFDKYYASIELSKRGFITVPNFLVQGKEA 237
Query: 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
+ESEL WF +N+LDP SG VVVKP AGSSIGVTVAYGV DSLKKAK +ILEGIDD+V+
Sbjct: 238 DESELFKWFASNRLDPTSGTVVVKPAVAGSSIGVTVAYGVADSLKKAKDLILEGIDDKVL 297
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VELFL+GGSEFTAIV+DVGSGF+CHPVVLLPTEVELQF GS D+RE DAIFNYRRKYLPT
Sbjct: 298 VELFLDGGSEFTAIVVDVGSGFECHPVVLLPTEVELQFHGSADIRENDAIFNYRRKYLPT 357
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
QQVAYHTPPRFP+ +I IR+GASLLFQRL L DFARIDGW+LPSS FSSSE K+G T
Sbjct: 358 QQVAYHTPPRFPVDIIKKIRQGASLLFQRLRLRDFARIDGWYLPSSNSAFSSSEGKFGRT 417
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH 471
+ GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR+II AC RFP+LAS ++S
Sbjct: 418 DLGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRSIIHRACLRFPSLASNYNLSDC 477
Query: 472 LPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCL 531
LP +S + TE+ +K EG R+VFV+FGGDTSERQVSLMSGTNVWL LQAF+D++VTPCL
Sbjct: 478 LPRKSKSLQLTESFSKSEGTRKVFVLFGGDTSERQVSLMSGTNVWLKLQAFDDLDVTPCL 537
Query: 532 LASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHL 591
LA S N D S R VW LPYSLVLRHTTEEVL ACIEAIEP +AAFTSHL
Sbjct: 538 LAPS---------NGQSSDDSFRAVWLLPYSLVLRHTTEEVLDACIEAIEPAQAAFTSHL 588
Query: 592 RNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651
R+QV NDL+EGLKKHSWF GFDIADELP S+ EWIKLAKE QATVFIAVHGGIGEDGT
Sbjct: 589 RSQVTNDLMEGLKKHSWFKGFDIADELPTIFSMKEWIKLAKEIQATVFIAVHGGIGEDGT 648
Query: 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711
LQS+LEA+GVPYTGPGV+ASKTCMDKVATSLAL+HLADLGVLTI K+V +K+DL P +
Sbjct: 649 LQSMLEAQGVPYTGPGVVASKTCMDKVATSLALSHLADLGVLTIKKEVYKKQDLQNMPAL 708
Query: 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAH 771
++WH LTS LQC+TLCVKPARDGCSTGVARL C EDL VYVKALE+CLLRIPPNS S+AH
Sbjct: 709 EVWHNLTSALQCETLCVKPARDGCSTGVARLRCTEDLAVYVKALEDCLLRIPPNSLSKAH 768
Query: 772 GMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 831
G+IEMP+PPPE+LIFEPF+ETDEI+ SS+ST +NA+RLMWKG+SRW+EITVGVIG GSM
Sbjct: 769 GVIEMPHPPPELLIFEPFIETDEIVVSSKSTCENANRLMWKGHSRWLEITVGVIGTRGSM 828
Query: 832 HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 891
HSL PSVTVKE+GDILSLEEKFQGGTGINLTPPP SI+S E LD+CKQ IELIAN LQLE
Sbjct: 829 HSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPTSIVSNEVLDRCKQHIELIANTLQLE 888
Query: 892 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
GFSRIDAF+NVD+GEVLIIEVNTVPGMTPSTVLIHQAL+EQPP+YPH+FFR +LDL SER
Sbjct: 889 GFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQPPVYPHRFFRTLLDLASER 948
>gi|357506461|ref|XP_003623519.1| D-alanine--D-alanine ligase [Medicago truncatula]
gi|355498534|gb|AES79737.1| D-alanine--D-alanine ligase [Medicago truncatula]
Length = 955
Score = 1418 bits (3670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/929 (74%), Positives = 787/929 (84%), Gaps = 12/929 (1%)
Query: 26 PKVLSRNRKLKLKKSACRYATKTTSLGVEGARASAEVLEDQTMAKEARG---GRVLRVGL 82
PK L N KL CR AT+++++ ARA+ + + +G GR LRVGL
Sbjct: 34 PKHLELNHKL----ITCR-ATRSSAV----ARATISEVVVVSSGVAEKGKEEGRALRVGL 84
Query: 83 ICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFK 142
ICGGPSAERGISLNSARSVLDH+QGDDL V CYYID NLNA+AISSAQVYSNTPADFDFK
Sbjct: 85 ICGGPSAERGISLNSARSVLDHLQGDDLHVSCYYIDCNLNAHAISSAQVYSNTPADFDFK 144
Query: 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202
LESLAQ F +L++ AEHL+A VDIVFP IHGRFGEDGGIQE+LEKYNVPFVGTGS C Q
Sbjct: 145 LESLAQSFSTLADLAEHLSAAVDIVFPVIHGRFGEDGGIQELLEKYNVPFVGTGSSECCQ 204
Query: 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSS 262
AFDKY AS E+ K GF+TVPSFL+QG E N+SELS WF ++LDP++GKVVVKPTR GSS
Sbjct: 205 AFDKYKASSELRKHGFVTVPSFLVQGYETNKSELSEWFRKHQLDPDTGKVVVKPTRGGSS 264
Query: 263 IGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP 322
IGVTVAYGV DSL KA I+ EGIDD+V++ELFLEGGSEFTAIVLDVGS D PV LLP
Sbjct: 265 IGVTVAYGVNDSLVKASEIMSEGIDDKVLIELFLEGGSEFTAIVLDVGSSSDSFPVALLP 324
Query: 323 TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382
TEVELQF G D++E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GAS+LFQ+L
Sbjct: 325 TEVELQFLGENDLKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGASILFQQLH 384
Query: 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGF 442
L DFARIDGWFLP S SSSE+++G +E GTI+FTDIN+ISGMEQTSFLFQQASKVGF
Sbjct: 385 LQDFARIDGWFLPDSGCKLSSSESEFGRSESGTIIFTDINMISGMEQTSFLFQQASKVGF 444
Query: 443 SHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 502
SH+NILR+I+ HAC RFPNLAS + +SS +P RS S+ ++ +REG ++VFVIFGGDT
Sbjct: 445 SHTNILRSIVHHACLRFPNLASVSGISSQIPSRSKSSELNKSFPRREGAQKVFVIFGGDT 504
Query: 503 SERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYS 562
SERQVSLMSGTNVWLNL FND+EVTPCLL+S+ D +S +D I D +R VWSLPYS
Sbjct: 505 SERQVSLMSGTNVWLNLLGFNDLEVTPCLLSSTSDYASSVDIGIKADDVWNRTVWSLPYS 564
Query: 563 LVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRH 622
LVLRHTTEEVL AC+EAIEP+RAA TS LR QV+NDL+EGLK H+WFTGFDIA+ELP +
Sbjct: 565 LVLRHTTEEVLDACVEAIEPNRAALTSDLRKQVMNDLMEGLKDHNWFTGFDIANELPKKF 624
Query: 623 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 682
S+ EWIKLAKE +ATVFIAVHGGIGEDG LQSLL+AEGVPYTGPG +ASK CMDKVATS+
Sbjct: 625 SLREWIKLAKEVKATVFIAVHGGIGEDGRLQSLLDAEGVPYTGPGALASKICMDKVATSV 684
Query: 683 ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
A+NHLA+LG+LTINK+V RK+DL PI DIWH+LT KLQC+TLCVKPARDGCSTGVARL
Sbjct: 685 AVNHLANLGILTINKEVWRKDDLSNKPINDIWHDLTQKLQCETLCVKPARDGCSTGVARL 744
Query: 743 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 802
C+ DL +Y+KALE+ LLRIPPNS S+AHGMIEMPNPPPE+LIFEPF+ETDEI+ SS+
Sbjct: 745 RCSNDLAIYIKALEDSLLRIPPNSLSKAHGMIEMPNPPPELLIFEPFIETDEIIVSSKVK 804
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
N+ MWKGNSRWVEITVGVIGK GSMHSL PSVTVKE+GDILSLEEKFQGGTGINLT
Sbjct: 805 NETGHGFMWKGNSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLT 864
Query: 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
PPP SIMS +AL +CK+ IELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPST
Sbjct: 865 PPPLSIMSEKALQRCKKHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPST 924
Query: 923 VLIHQALSEQPPMYPHQFFRKVLDLGSER 951
VL+HQAL+EQPP+YPHQFFR +LDL SER
Sbjct: 925 VLVHQALAEQPPLYPHQFFRTLLDLASER 953
>gi|449439825|ref|XP_004137686.1| PREDICTED: uncharacterized protein LOC101204441 [Cucumis sativus]
Length = 960
Score = 1404 bits (3633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/874 (76%), Positives = 769/874 (87%), Gaps = 1/874 (0%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVGLICGGPSAERGISLNSARSVLDHIQG DL V CYYID LNAYAISSAQVYSNTPA
Sbjct: 86 LRVGLICGGPSAERGISLNSARSVLDHIQGHDLQVSCYYIDSELNAYAISSAQVYSNTPA 145
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DFDFKL+SLA+GF SL++FAEHL+ +VDIVFP IHGRFGEDGGIQE+LE +N+PFVGTGS
Sbjct: 146 DFDFKLKSLARGFQSLTDFAEHLSTSVDIVFPVIHGRFGEDGGIQELLETHNIPFVGTGS 205
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ AFDKY+ASLE+ + GFITVP+FL+Q V+E+ELS WFV+N+LD +SGKVVVKP
Sbjct: 206 KESSNAFDKYNASLELDRLGFITVPNFLVQAGGVSETELSKWFVSNQLDLSSGKVVVKPA 265
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
RAGSSIGV+VAYGV+DSLKKA II E IDD+V+VE+FLEGGSEFTAIVLDVGSG CHP
Sbjct: 266 RAGSSIGVSVAYGVVDSLKKANEIISEEIDDKVLVEVFLEGGSEFTAIVLDVGSGSVCHP 325
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
VVLLPTEVE+Q G D EKDAIFNYRRKYLPTQQVAYHTPPRFPI VI +IREGASLL
Sbjct: 326 VVLLPTEVEIQSCGLADAGEKDAIFNYRRKYLPTQQVAYHTPPRFPIDVIETIREGASLL 385
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ LGLCDFARIDGW+LPS +H S S K+G TE GT+++TDINLISGMEQTSFLFQQA
Sbjct: 386 FKGLGLCDFARIDGWYLPSFSHESSCSTGKFGKTESGTVVYTDINLISGMEQTSFLFQQA 445
Query: 438 SKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVI 497
SKVGFSHSNILR+II HAC R+P+L S + +S ++P RS S+ ++A + E IR+VFVI
Sbjct: 446 SKVGFSHSNILRSIIYHACLRYPSLESLDCMSGNVPRRSISSQRSQAYSTHESIRKVFVI 505
Query: 498 FGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVW 557
FGG+TSERQVSLMSGTNVWLNLQAF+D+EVTPCLLASSI+ SG+D + + D +S+ VW
Sbjct: 506 FGGNTSERQVSLMSGTNVWLNLQAFDDLEVTPCLLASSIEQESGVDLDKNEADLTSKTVW 565
Query: 558 SLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADE 617
SLPYSLVLRHTTEEVLAAC+EAIEP+RAA TSHLR VV DL +GLKKHSWF GFDI D+
Sbjct: 566 SLPYSLVLRHTTEEVLAACVEAIEPNRAALTSHLRELVVTDLEQGLKKHSWFAGFDIKDK 625
Query: 618 LPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 677
LP+R S+ +WI+ KE ATVFIAVHGGIGEDGTLQSLLEA+GVPYTGPGV AS CMDK
Sbjct: 626 LPVRFSLEQWIEKVKEVDATVFIAVHGGIGEDGTLQSLLEAKGVPYTGPGVAASNICMDK 685
Query: 678 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 737
V+TSLALNHL+D GVLTI KDVRRK+DLL+ PI+++WH+LT KLQC++LCVKPARDGCST
Sbjct: 686 VSTSLALNHLSDFGVLTIKKDVRRKDDLLRFPILNVWHDLTCKLQCQSLCVKPARDGCST 745
Query: 738 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 797
GVARLCCA+DL VYVKALE+CL+RIP NS S+AHGMIEMP PPPE+LIFEPF+ETDEI+
Sbjct: 746 GVARLCCADDLAVYVKALEDCLVRIPSNSLSKAHGMIEMPKPPPELLIFEPFIETDEIIV 805
Query: 798 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 857
SS++ + ++RL+WKG SRWVEITVGV+G GSM SL PSVTVKESGDILSLEEKFQGGT
Sbjct: 806 SSKTIDA-SERLLWKGQSRWVEITVGVVGTRGSMRSLSPSVTVKESGDILSLEEKFQGGT 864
Query: 858 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917
GINLTPPP SI+S E+L KCKQ IELIANALQLEGFSRIDAFV+VD+G+VL+IEVNTVPG
Sbjct: 865 GINLTPPPLSIISNESLGKCKQHIELIANALQLEGFSRIDAFVDVDSGKVLVIEVNTVPG 924
Query: 918 MTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
MTPSTVLIHQAL+E PP+YPHQFFR++LDL SER
Sbjct: 925 MTPSTVLIHQALAETPPVYPHQFFRRLLDLASER 958
>gi|356532203|ref|XP_003534663.1| PREDICTED: uncharacterized protein LOC100819595 [Glycine max]
Length = 949
Score = 1400 bits (3625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/877 (76%), Positives = 761/877 (86%), Gaps = 1/877 (0%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
RVL++GLICGGPSAERGISLNSARSVLDH+QGDDL V CYYID NLNA+AISSAQVYSNT
Sbjct: 71 RVLKLGLICGGPSAERGISLNSARSVLDHLQGDDLHVSCYYIDCNLNAFAISSAQVYSNT 130
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
PADFDFKLESLAQ F +LS+ A+HLA VDIVFP IHG+FGEDGGIQE+LEKYNVPFVGT
Sbjct: 131 PADFDFKLESLAQSFQTLSDLAKHLATAVDIVFPVIHGQFGEDGGIQELLEKYNVPFVGT 190
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
GS+ C QAFDK+ ASLE+ K GFITVPSFL+QG E ++SELS WF ++LDP+ GKVVVK
Sbjct: 191 GSKECCQAFDKHKASLELRKHGFITVPSFLVQGYETDKSELSEWFKKHQLDPDLGKVVVK 250
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
PTR GSSIGV VAYGV DSL KA I+ EGID +V++E+FLEGG+EFTAIVLDVGS D
Sbjct: 251 PTRGGSSIGVGVAYGVNDSLVKANEIMSEGIDKKVLIEIFLEGGNEFTAIVLDVGSDLDS 310
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PVVLLPTEVELQF+G+ DV+E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GAS
Sbjct: 311 FPVVLLPTEVELQFRGANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGAS 370
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSS-SETKYGSTEWGTILFTDINLISGMEQTSFLF 434
LLFQRL L DFARIDGWFLP+S+ S S++++G TE G I+FTDIN+ISGMEQTSFLF
Sbjct: 371 LLFQRLCLQDFARIDGWFLPNSSSKLSPFSQSEFGRTESGAIIFTDINMISGMEQTSFLF 430
Query: 435 QQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREV 494
QQASKVGFSH+NILR+II HAC RFPNLAS + +S LP RS + ++ ++REG R+V
Sbjct: 431 QQASKVGFSHTNILRSIIHHACLRFPNLASVSGISGQLPSRSKSLQRNKSFSRREGTRKV 490
Query: 495 FVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSR 554
FVIFGG+TSERQVSLMSGTNVWLNL AF+D+EVTPCLL+ + +C+S +D D +R
Sbjct: 491 FVIFGGNTSERQVSLMSGTNVWLNLLAFHDLEVTPCLLSPTSECASSIDMGKKADDVMNR 550
Query: 555 VVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDI 614
VWSLPYSLVLRHTTEEVL AC+EAIEP+ AA TS LR +V+NDL+EGLK H+WFTGFDI
Sbjct: 551 TVWSLPYSLVLRHTTEEVLDACMEAIEPEHAAITSELRKKVMNDLMEGLKDHNWFTGFDI 610
Query: 615 ADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 674
AD+LP++ S+ +WIKLAKE QATVFIAVHGGIGEDGTLQSLL+AEGVPYTGPG MASK C
Sbjct: 611 ADDLPVKFSLRQWIKLAKEVQATVFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKIC 670
Query: 675 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 734
MDKVATS+AL HLA+ GVLTINKDVR+K+DL PI D WH+LT KLQC+TLCVKPA+DG
Sbjct: 671 MDKVATSVALKHLANSGVLTINKDVRQKDDLSNKPINDTWHDLTRKLQCQTLCVKPAKDG 730
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 794
CSTGVARLCC EDL +YVKALE+CLLRIPPN S+AHGMIEMPNPPPE LIFEPF+ETDE
Sbjct: 731 CSTGVARLCCPEDLAIYVKALEDCLLRIPPNCLSKAHGMIEMPNPPPEHLIFEPFIETDE 790
Query: 795 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 854
I+ +S+ + L WKG+SRWVEITVGVIGK GSMHSL PSVTVKESGDILSLEEKFQ
Sbjct: 791 IIVTSKFEDATGHGLTWKGHSRWVEITVGVIGKRGSMHSLSPSVTVKESGDILSLEEKFQ 850
Query: 855 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 914
GGTGINLTPPP SIMS AL +CKQ IELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNT
Sbjct: 851 GGTGINLTPPPLSIMSENALKRCKQHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNT 910
Query: 915 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
VPGMTPSTVLIHQAL EQPP+YPHQFFRK+LDL SER
Sbjct: 911 VPGMTPSTVLIHQALVEQPPLYPHQFFRKLLDLASER 947
>gi|356566751|ref|XP_003551592.1| PREDICTED: uncharacterized protein LOC100775955 [Glycine max]
Length = 955
Score = 1399 bits (3621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/878 (76%), Positives = 764/878 (87%), Gaps = 1/878 (0%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
GRVL+VGLICGGPSAERGISLNSARSVLDH+QGDDL V CYYID NLNA+AISSAQVYSN
Sbjct: 76 GRVLKVGLICGGPSAERGISLNSARSVLDHLQGDDLHVSCYYIDCNLNAFAISSAQVYSN 135
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
TPADFDFKLESLAQ F +LS+ A+HLA VDIVFP IHG+FGEDGGIQE+LEKYNVPFVG
Sbjct: 136 TPADFDFKLESLAQSFQTLSDLAKHLATAVDIVFPVIHGQFGEDGGIQELLEKYNVPFVG 195
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
TGS+ C QAFDK+ ASLE+ K GFITVPSFL+QG E +SELS WF ++LDP+ GKVVV
Sbjct: 196 TGSKECCQAFDKHKASLELRKHGFITVPSFLVQGYETKKSELSEWFEKHQLDPDLGKVVV 255
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KPTR GSSIGV VAYGV DSL KA I+ EGID++V++E++LEGGSEFTAIVLDVGS D
Sbjct: 256 KPTRGGSSIGVRVAYGVNDSLVKANEIMSEGIDNKVLIEIYLEGGSEFTAIVLDVGSASD 315
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PVVLLPTEVELQF+G+ DV+E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GA
Sbjct: 316 SFPVVLLPTEVELQFRGANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGA 375
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSS-ETKYGSTEWGTILFTDINLISGMEQTSFL 433
SL+FQ+L L DFARIDGWFLP+S+ S S E+++G TE GTI+FTDINLISGMEQTSFL
Sbjct: 376 SLIFQQLCLQDFARIDGWFLPNSSSKLSPSPESEFGRTESGTIIFTDINLISGMEQTSFL 435
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIRE 493
FQQASKVGFSH+NILR+II HAC RFPNLAS + +S LP RS + +++ ++ EG R+
Sbjct: 436 FQQASKVGFSHTNILRSIIHHACLRFPNLASVSGISGQLPSRSKSLQQSKSFSRHEGTRK 495
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
VFVIFGG+TSERQVSLMSGTNVWLNL AF+D+EVTPCLL+ + +C+S +D D +
Sbjct: 496 VFVIFGGNTSERQVSLMSGTNVWLNLLAFHDLEVTPCLLSPTSECASSVDIGKKADDVMN 555
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
R V SLPYSLVLRHTTEEVL AC+EAIEP+RAA TS LR +V+NDL+EGLK H+WFTGFD
Sbjct: 556 RTVLSLPYSLVLRHTTEEVLDACMEAIEPERAAITSDLRKKVMNDLMEGLKDHNWFTGFD 615
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
IAD+LP + S+ +WIKLAKE QAT+FIAVHGGIGEDGTLQSLL+AEGVPYTGPG MASK
Sbjct: 616 IADDLPAKFSLRQWIKLAKEVQATIFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKI 675
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733
CMDKVATS+A+ HLA+ GVLTINK+VR+K+DL PI D WH+LT KLQC+TLCVKPA+D
Sbjct: 676 CMDKVATSVAIKHLANSGVLTINKNVRQKDDLSNKPISDTWHDLTRKLQCQTLCVKPAKD 735
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
GCSTGVARLCC+EDL +YV+ALE+CLLRIPPNS S+AHGMIEMPNPPPE LIFEPF+ETD
Sbjct: 736 GCSTGVARLCCSEDLAIYVRALEDCLLRIPPNSLSKAHGMIEMPNPPPEYLIFEPFIETD 795
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 853
EI+ +S+ + L WKG+SRWVEITVGVIGK GSMHSL PSVTVKESGDILSLEEKF
Sbjct: 796 EIIVTSKFEDATGHGLTWKGHSRWVEITVGVIGKRGSMHSLSPSVTVKESGDILSLEEKF 855
Query: 854 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
QGGTGINLTPPP SIMS AL +CKQ IELIAN LQLEGFSRIDAFVNVD+GEVLIIEVN
Sbjct: 856 QGGTGINLTPPPLSIMSENALKRCKQHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVN 915
Query: 914 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
TVPGMTPSTVLIHQAL EQPP+YPHQFFRK+LDL SER
Sbjct: 916 TVPGMTPSTVLIHQALVEQPPLYPHQFFRKLLDLASER 953
>gi|449483593|ref|XP_004156633.1| PREDICTED: uncharacterized LOC101204441 [Cucumis sativus]
Length = 894
Score = 1379 bits (3568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 663/880 (75%), Positives = 763/880 (86%), Gaps = 7/880 (0%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVGLICGGPSAERGISLNSARSVLDHIQG DL V CYYID LNAYAISSAQVYSNTPA
Sbjct: 14 LRVGLICGGPSAERGISLNSARSVLDHIQGHDLQVSCYYIDSELNAYAISSAQVYSNTPA 73
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DFDFKL+SLA+GF SL++FAEHL+ +VDIVFP IHGRFGEDGGIQE+LE +N+PFVGTGS
Sbjct: 74 DFDFKLKSLARGFQSLTDFAEHLSTSVDIVFPVIHGRFGEDGGIQELLETHNIPFVGTGS 133
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ AFDKY+ASLE+ + GFITVP+FL+Q V+E+ELS WFV+N+LD +SGKVVVKP
Sbjct: 134 KESSNAFDKYNASLELDRLGFITVPNFLVQAGGVSETELSKWFVSNQLDLSSGKVVVKPA 193
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
RAGSSIGV+VAYGV+DSLKKA II E IDD+V+VE+FLEGGSEFTAIVLDVGSG CHP
Sbjct: 194 RAGSSIGVSVAYGVVDSLKKANEIISEEIDDKVLVEVFLEGGSEFTAIVLDVGSGSVCHP 253
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
VVLLPTEVE+Q G D EKDAIFNYRRKYLPTQQVAYHTPPRFPI VI +IREGASLL
Sbjct: 254 VVLLPTEVEIQSCGLADAGEKDAIFNYRRKYLPTQQVAYHTPPRFPIDVIETIREGASLL 313
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ LGLCDFARIDGW+LPS +H S S K+G TE GT+++TDINLISGMEQTSF F +
Sbjct: 314 FKGLGLCDFARIDGWYLPSFSHESSCSTGKFGKTESGTVVYTDINLISGMEQTSFCFSKP 373
Query: 438 SKV------GFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGI 491
+ FSHSNILR+II HAC R+P+L S + +S ++P RS S+ ++A + E I
Sbjct: 374 QSLIYSFPGWFSHSNILRSIIYHACLRYPSLESLDCMSGNVPRRSISSQRSQAYSTHESI 433
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
R+VFVIFGG+TSERQVSLMSGTNVWLNLQAF+D+EVTPCLLASSI+ SG+D + + D
Sbjct: 434 RKVFVIFGGNTSERQVSLMSGTNVWLNLQAFDDLEVTPCLLASSIEQESGVDLDKNEADL 493
Query: 552 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 611
+S+ VWSLPYSLVLRHTTEEVLAAC+EAIEP+RAA TSHLR VV DL +GLKKHSWF G
Sbjct: 494 TSKTVWSLPYSLVLRHTTEEVLAACVEAIEPNRAALTSHLRELVVTDLEQGLKKHSWFAG 553
Query: 612 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
FDI D+LP+R S+ +WI+ KE ATVFIAVHGGIGEDGTLQSLLEA+GVPYTGPGV AS
Sbjct: 554 FDIKDKLPVRFSLEQWIEKVKEVDATVFIAVHGGIGEDGTLQSLLEAKGVPYTGPGVAAS 613
Query: 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
CMDKV+TSLALNHL+D GVLTI KDVRRK+DLL+ PI+++WH+LT KLQC++LCVKPA
Sbjct: 614 NICMDKVSTSLALNHLSDFGVLTIKKDVRRKDDLLRFPILNVWHDLTCKLQCQSLCVKPA 673
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
RDGCSTGVARLCCA+DL VYVKALE+CL+RIP NS S+AHGMIEMP PPPE+LIFEPF+E
Sbjct: 674 RDGCSTGVARLCCADDLAVYVKALEDCLVRIPSNSLSKAHGMIEMPKPPPELLIFEPFIE 733
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
TDEI+ SS++ + ++RL+WKG SRWVEITVGV+G GSM SL PSVTVKESGDILSLEE
Sbjct: 734 TDEIIVSSKTIDA-SERLLWKGQSRWVEITVGVVGTRGSMRSLSPSVTVKESGDILSLEE 792
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
KFQGGTGINLTPPP SI+S E+L KCKQ IELIANALQLEGFSRIDAFV+VD+G+VL+IE
Sbjct: 793 KFQGGTGINLTPPPLSIISNESLGKCKQHIELIANALQLEGFSRIDAFVDVDSGKVLVIE 852
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
VNTVPGMTPSTVLIHQAL+E PP+YPHQFFR++LDL SER
Sbjct: 853 VNTVPGMTPSTVLIHQALAETPPVYPHQFFRRLLDLASER 892
>gi|297833634|ref|XP_002884699.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
lyrata]
gi|297330539|gb|EFH60958.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
lyrata]
Length = 943
Score = 1281 bits (3315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/933 (68%), Positives = 748/933 (80%), Gaps = 31/933 (3%)
Query: 29 LSRNRKLKLKKSACRYATKTTSLGVEGA--RASAEVLEDQTMAKEARGGRVLRVGLICGG 86
L ++K L +S C ++ G GA S V++ M+K LRVGLICGG
Sbjct: 34 LKLHQKNSLSESTCSFSVMNKYRGSGGAIRTVSKAVVDGDEMSKN------LRVGLICGG 87
Query: 87 PSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL 146
PSAERGISLNSARSVLDHIQGD + V CYYID +L A+AISSAQVYSNTP+DFDFKLESL
Sbjct: 88 PSAERGISLNSARSVLDHIQGDGISVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESL 147
Query: 147 AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDK 206
AQGF SLS+FAEHL + VDIVFP IHGRFGEDGGIQE+LE N+PFVGTGSR C +AFDK
Sbjct: 148 AQGFSSLSKFAEHLVSAVDIVFPVIHGRFGEDGGIQELLESQNIPFVGTGSRECIRAFDK 207
Query: 207 YDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVT 266
Y+ASLE+ + GF+TVP++L+QG+EV++SE++ WF N+LD GKVVVKP +AGSSIGV
Sbjct: 208 YEASLELKELGFMTVPNYLVQGTEVDKSEIAQWFTDNQLDLEMGKVVVKPAKAGSSIGVK 267
Query: 267 VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVE 326
VA+GV DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+
Sbjct: 268 VAFGVNDSIKKAIELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSGCHPVVLMPTEVQ 327
Query: 327 LQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDF 386
LQF GS D++E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+F++LGL DF
Sbjct: 328 LQFHGSGDLQE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFKKLGLRDF 386
Query: 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSN 446
ARIDGW+L ++++ S+SET G E G I+FTDINLISGMEQTSFLFQQASKVGFSHSN
Sbjct: 387 ARIDGWYLAPNSNLSSASET-LGGPESGDIIFTDINLISGMEQTSFLFQQASKVGFSHSN 445
Query: 447 ILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQ 506
ILRT++ ACSRFP+L YN G S + + L +++VFVIFGGDTSERQ
Sbjct: 446 ILRTVVHRACSRFPHLTWYNY------GYSLLLQGSTTLEVSGDVQKVFVIFGGDTSERQ 499
Query: 507 VSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLR 566
VS+MSGTNVW+NLQ F D+ VTPCLL+ S+ SSG N+ + R VW LPYS+VLR
Sbjct: 500 VSVMSGTNVWINLQRFVDLNVTPCLLSPSLGNSSGASLNLDN-----REVWVLPYSVVLR 554
Query: 567 HTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINE 626
HT EEVLAAC+EA+EPDRA FTS L+ QV+ DL++GLK SWF GFDI DELP S+ E
Sbjct: 555 HTAEEVLAACLEAVEPDRALFTSLLQKQVMEDLMDGLKNQSWFAGFDITDELPRNFSLKE 614
Query: 627 WIKLAKENQATVFIA------VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
WIK A+E QATVFIA +HGGIGEDGTLQ+LLE EGV YTGPGV+AS+TCMDKV T
Sbjct: 615 WIKHAREAQATVFIAGYRYIFMHGGIGEDGTLQALLEDEGVSYTGPGVLASRTCMDKVMT 674
Query: 681 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
S AL+HL++LG+ TI+KDVRR ED++ I ++W EL SK QC TLCVKPA+DGCSTGVA
Sbjct: 675 SQALSHLSELGIHTISKDVRRTEDIMHETIPNVWDELISKFQCLTLCVKPAKDGCSTGVA 734
Query: 741 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800
RLCC+EDL VYV+AL++CLLRIPPN+ S+ HG IEMPNP PE LIFEPFVETDEI+ SS
Sbjct: 735 RLCCSEDLAVYVQALKDCLLRIPPNTLSKTHGTIEMPNPTPEFLIFEPFVETDEIIVSS- 793
Query: 801 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
K +L WKG RWVE+TVGVIGK GSMHSL PS+TVKESGDILSLEEKFQGGTGIN
Sbjct: 794 ---KVKQQLSWKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGIN 850
Query: 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
LTPPP +IMS EAL++CKQRIELIA L LEGFSRIDAFV+V+ GEVL+IEVNTVPGMTP
Sbjct: 851 LTPPPPTIMSKEALERCKQRIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTP 910
Query: 921 STVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
STVLI QAL+EQPPMYP QFFR +L L ++R +
Sbjct: 911 STVLIQQALAEQPPMYPPQFFRTLLHLATQRVI 943
>gi|357506463|ref|XP_003623520.1| D-alanine--D-alanine ligase [Medicago truncatula]
gi|355498535|gb|AES79738.1| D-alanine--D-alanine ligase [Medicago truncatula]
Length = 877
Score = 1275 bits (3300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/848 (73%), Positives = 712/848 (83%), Gaps = 12/848 (1%)
Query: 26 PKVLSRNRKLKLKKSACRYATKTTSLGVEGARASAEVLEDQTMAKEARG---GRVLRVGL 82
PK L N KL CR AT+++++ ARA+ + + +G GR LRVGL
Sbjct: 34 PKHLELNHKL----ITCR-ATRSSAV----ARATISEVVVVSSGVAEKGKEEGRALRVGL 84
Query: 83 ICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFK 142
ICGGPSAERGISLNSARSVLDH+QGDDL V CYYID NLNA+AISSAQVYSNTPADFDFK
Sbjct: 85 ICGGPSAERGISLNSARSVLDHLQGDDLHVSCYYIDCNLNAHAISSAQVYSNTPADFDFK 144
Query: 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202
LESLAQ F +L++ AEHL+A VDIVFP IHGRFGEDGGIQE+LEKYNVPFVGTGS C Q
Sbjct: 145 LESLAQSFSTLADLAEHLSAAVDIVFPVIHGRFGEDGGIQELLEKYNVPFVGTGSSECCQ 204
Query: 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSS 262
AFDKY AS E+ K GF+TVPSFL+QG E N+SELS WF ++LDP++GKVVVKPTR GSS
Sbjct: 205 AFDKYKASSELRKHGFVTVPSFLVQGYETNKSELSEWFRKHQLDPDTGKVVVKPTRGGSS 264
Query: 263 IGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP 322
IGVTVAYGV DSL KA I+ EGIDD+V++ELFLEGGSEFTAIVLDVGS D PV LLP
Sbjct: 265 IGVTVAYGVNDSLVKASEIMSEGIDDKVLIELFLEGGSEFTAIVLDVGSSSDSFPVALLP 324
Query: 323 TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382
TEVELQF G D++E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GAS+LFQ+L
Sbjct: 325 TEVELQFLGENDLKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGASILFQQLH 384
Query: 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGF 442
L DFARIDGWFLP S SSSE+++G +E GTI+FTDIN+ISGMEQTSFLFQQASKVGF
Sbjct: 385 LQDFARIDGWFLPDSGCKLSSSESEFGRSESGTIIFTDINMISGMEQTSFLFQQASKVGF 444
Query: 443 SHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 502
SH+NILR+I+ HAC RFPNLAS + +SS +P RS S+ ++ +REG ++VFVIFGGDT
Sbjct: 445 SHTNILRSIVHHACLRFPNLASVSGISSQIPSRSKSSELNKSFPRREGAQKVFVIFGGDT 504
Query: 503 SERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYS 562
SERQVSLMSGTNVWLNL FND+EVTPCLL+S+ D +S +D I D +R VWSLPYS
Sbjct: 505 SERQVSLMSGTNVWLNLLGFNDLEVTPCLLSSTSDYASSVDIGIKADDVWNRTVWSLPYS 564
Query: 563 LVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRH 622
LVLRHTTEEVL AC+EAIEP+RAA TS LR QV+NDL+EGLK H+WFTGFDIA+ELP +
Sbjct: 565 LVLRHTTEEVLDACVEAIEPNRAALTSDLRKQVMNDLMEGLKDHNWFTGFDIANELPKKF 624
Query: 623 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 682
S+ EWIKLAKE +ATVFIAVHGGIGEDG LQSLL+AEGVPYTGPG +ASK CMDKVATS+
Sbjct: 625 SLREWIKLAKEVKATVFIAVHGGIGEDGRLQSLLDAEGVPYTGPGALASKICMDKVATSV 684
Query: 683 ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
A+NHLA+LG+LTINK+V RK+DL PI DIWH+LT KLQC+TLCVKPARDGCSTGVARL
Sbjct: 685 AVNHLANLGILTINKEVWRKDDLSNKPINDIWHDLTQKLQCETLCVKPARDGCSTGVARL 744
Query: 743 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 802
C+ DL +Y+KALE+ LLRIPPNS S+AHGMIEMPNPPPE+LIFEPF+ETDEI+ SS+
Sbjct: 745 RCSNDLAIYIKALEDSLLRIPPNSLSKAHGMIEMPNPPPELLIFEPFIETDEIIVSSKVK 804
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
N+ MWKGNSRWVEITVGVIGK GSMHSL PSVTVKE+GDILSLEEKFQGGTGINLT
Sbjct: 805 NETGHGFMWKGNSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLT 864
Query: 863 PPPASIMS 870
PPP SIMS
Sbjct: 865 PPPLSIMS 872
>gi|42572325|ref|NP_974258.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
gi|332641163|gb|AEE74684.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
Length = 937
Score = 1256 bits (3249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 636/962 (66%), Positives = 749/962 (77%), Gaps = 34/962 (3%)
Query: 1 MTSLAFSSSFSFLRNDAVGG-----ITFRSPKVLSRNRKLKLKKSACRYATKTTSLGVEG 55
M S+A SFS GG + + L N+K L +S C LG+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCML------LGMNK 54
Query: 56 ARASAEVLEDQTMAKEARGG----RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLL 111
R S + +T++K G + LRVGLICGGPSAERGISLNSARSVLDHIQGD +
Sbjct: 55 YRGSGAI---RTVSKAVGYGQEMSKSLRVGLICGGPSAERGISLNSARSVLDHIQGDGIN 111
Query: 112 VRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTI 171
V CYYID +L A+AISSAQVYSNTP+DFDFKLESLAQGF SLSE AEHL + VDIVFP I
Sbjct: 112 VSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGFSSLSELAEHLVSAVDIVFPVI 171
Query: 172 HGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231
HGRFGEDGGIQE+LE +N+PFVGTGSR C +AFDKY+ASLE+ + GF+TVP++L+QG+ V
Sbjct: 172 HGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLVQGTGV 231
Query: 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV DS+KKA +ILEGIDDRVV
Sbjct: 232 DKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGIDDRVV 291
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G D +E +AIF+YRRKYLPT
Sbjct: 292 VEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGIGDPKE-NAIFDYRRKYLPT 350
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
QQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW+L ++++ S G T
Sbjct: 351 QQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGT 410
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH 471
+ G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRTI+ ACSRFP+L YN S
Sbjct: 411 KSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIVHRACSRFPHLDWYNYGYSQ 470
Query: 472 LPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCL 531
L S+ L E ++VFVIFGGDTSERQVS+MSGTNVW+NLQ + D+ VTPCL
Sbjct: 471 LLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSGTNVWVNLQRYVDLNVTPCL 524
Query: 532 LASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHL 591
L+ S+ S G +N+ + R VW LPYS+VLRHT EEVLAAC+EA+EP RA FTS L
Sbjct: 525 LSPSLSNSLGASSNLDN-----REVWVLPYSVVLRHTAEEVLAACLEAVEPVRALFTSLL 579
Query: 592 RNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651
+ QV+ DL++G K SWF GFDI DELP ++S+ EWIK AKE QATVFIAVHGGIGEDGT
Sbjct: 580 QKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGT 639
Query: 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711
LQ LLE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+ TI+KDV+R ED++
Sbjct: 640 LQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIMHETFP 699
Query: 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAH 771
++W EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV+AL++C+ RIPPN+ S+ H
Sbjct: 700 NVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNTLSKTH 759
Query: 772 GMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 831
GMIEMPNP PE LIFEPFVETDEI+ SS K +L WKG RWVE+TVGVIGK GSM
Sbjct: 760 GMIEMPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWKGRRRWVEMTVGVIGKRGSM 815
Query: 832 HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 891
HSL PS+TVKESGDILSLEEKFQGGTGINLTPPP +IMS EAL++CKQ IELIA L LE
Sbjct: 816 HSLSPSLTVKESGDILSLEEKFQGGTGINLTPPPPTIMSKEALERCKQGIELIAETLGLE 875
Query: 892 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
GFSRIDAFV+V+ GEVL+IEVNTVPGMTPSTVLI QAL+EQPPMYP QFFR +L L ++R
Sbjct: 876 GFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALAEQPPMYPPQFFRTLLHLATQR 935
Query: 952 FL 953
+
Sbjct: 936 VV 937
>gi|357115958|ref|XP_003559752.1| PREDICTED: uncharacterized protein LOC100840063 [Brachypodium
distachyon]
Length = 885
Score = 1246 bits (3225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/879 (68%), Positives = 711/879 (80%), Gaps = 7/879 (0%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
GR LRVGL+CGGPSAERGISLNSARSVLDHIQG+DLLV CYYID +NAY IS AQ+YSN
Sbjct: 10 GRPLRVGLVCGGPSAERGISLNSARSVLDHIQGEDLLVSCYYIDCGMNAYGISPAQLYSN 69
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
TP+DFDFKLESLAQ F SLSEF EHLAANVDIVFP IHG+FGEDG IQE+LEK NVPFVG
Sbjct: 70 TPSDFDFKLESLAQEFRSLSEFTEHLAANVDIVFPVIHGKFGEDGSIQELLEKTNVPFVG 129
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
T S CR+AFDK+ AS+E++ QGF+TVP+FL++ ++ +SEL WF + L+ +GKVVV
Sbjct: 130 TPSNECRRAFDKHSASIELNAQGFLTVPNFLVEKDKLAKSELEQWFQSINLNKENGKVVV 189
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KPTRAGSSIGV VAYG D+ +KA+GII EGIDD+V+VE+FLEGG EFTAIV+DVG+
Sbjct: 190 KPTRAGSSIGVVVAYGANDAAEKAEGIISEGIDDKVIVEVFLEGGCEFTAIVIDVGTANT 249
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PVVLLPTEVELQ G+ D++E D IFNYRRKYLPT+QV YHTPPRFP VI IR+G
Sbjct: 250 SEPVVLLPTEVELQSSGNNDIQE-DTIFNYRRKYLPTRQVTYHTPPRFPPEVIGCIRQGV 308
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSF 432
SLLF+ LGL DFARIDGWFLP+ SS E ++G+TE+GT+LFTDINLISGMEQTSF
Sbjct: 309 SLLFRHLGLRDFARIDGWFLPTPVSTLSSGENGGRFGNTEYGTVLFTDINLISGMEQTSF 368
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIR 492
LFQQASKVGFSHS ILRTI+ HACSRFP+L N+ + L + +K E + +
Sbjct: 369 LFQQASKVGFSHSRILRTIVQHACSRFPSLVPCNNSWTALSRKMQSAKQAEVIQNGTHKQ 428
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+ FVIFGGDTSERQVSLMSGTNVWLNLQ F D++VTPCLL + +G ++ S
Sbjct: 429 KAFVIFGGDTSERQVSLMSGTNVWLNLQGFEDLDVTPCLLTPA----NGYSSSHNQDGES 484
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR VW+LPYSLVLRHTTEEV AAC+EAIEP+R TS LR+QV+ +L + L K WF GF
Sbjct: 485 SRDVWTLPYSLVLRHTTEEVHAACLEAIEPERVEITSRLRDQVMKELEQALSKQDWFAGF 544
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
DIADE P ++S+ +WI KE +A VF+AVHGGIGEDGT+Q +LE+ GVPYTGPG +AS+
Sbjct: 545 DIADEQPTKYSLQQWIDHVKEAKAVVFVAVHGGIGEDGTIQLMLESAGVPYTGPGPIASR 604
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
TCMDKVATSLA++HLA G+ TI K VR ++LL + +VDIW++L SKLQ +T+CVKPAR
Sbjct: 605 TCMDKVATSLAVDHLAGYGIHTIPKGVRETDELLSSSLVDIWNDLKSKLQTETVCVKPAR 664
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
DGCSTGVARLCC EDL VYV AL L R+P N SRAHG+IEMP PPPE LIFEPF+ET
Sbjct: 665 DGCSTGVARLCCPEDLEVYVTALRRKLQRLPANCLSRAHGVIEMPVPPPESLIFEPFIET 724
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
DEI+ S++S + +A L+WKG W+E+TVGV+GKCG MHSL PS+TVKESGDILSLEEK
Sbjct: 725 DEIIISNKSRDDSARHLVWKGEKEWLEVTVGVVGKCGEMHSLNPSITVKESGDILSLEEK 784
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
FQGGTGINLTPPPA+IMS +AL KCK IE++AN L LEGFSRIDAFVNV NGEVL+IEV
Sbjct: 785 FQGGTGINLTPPPATIMSEDALRKCKSCIEMMANTLGLEGFSRIDAFVNVRNGEVLLIEV 844
Query: 913 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
NTVPGMTPSTVLIHQAL+E PP+YPH+FFR +LDL R
Sbjct: 845 NTVPGMTPSTVLIHQALTEDPPIYPHKFFRTLLDLAFAR 883
>gi|242047420|ref|XP_002461456.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
gi|241924833|gb|EER97977.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
Length = 945
Score = 1240 bits (3209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/931 (64%), Positives = 739/931 (79%), Gaps = 7/931 (0%)
Query: 24 RSPKVLSRNRKLKLKKSACRYATKTTSLGVEGARASAEVLEDQTMAKEA-RGGRVLRVGL 82
R+P R L+ S+ + + G+ R A V + + EA GR LRVGL
Sbjct: 17 RAPLSSPTLRHLRALVSSPPLGFASAARGLAPLRLRAVVSDHEQRGMEAGEQGRPLRVGL 76
Query: 83 ICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFK 142
ICGGPS ERG+SLNSARSVLDHIQG+DL+VRCYYID + A+AIS AQ+YSNTP+DFDFK
Sbjct: 77 ICGGPSGERGVSLNSARSVLDHIQGEDLVVRCYYIDSAMKAFAISPAQLYSNTPSDFDFK 136
Query: 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202
LESLAQGF SLS+FAEHLA NVDIVFP IHG+FGEDGGIQE+LEK NVPFVGT S+ C +
Sbjct: 137 LESLAQGFDSLSDFAEHLAINVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECER 196
Query: 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSS 262
AFDK++ASLE++ QGF+TVP+FL++ ++ + EL WF T L+ +GKV+VKPTRAGSS
Sbjct: 197 AFDKHNASLELNAQGFLTVPNFLVEKDKLAKPELEAWFKTVNLNKENGKVIVKPTRAGSS 256
Query: 263 IGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP 322
IGV VAYGV D+ +KA+ II EGIDD+V++E+FLEGG+EFTAIV+DVG+ + PVVLLP
Sbjct: 257 IGVVVAYGVNDAAQKAEEIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSQPVVLLP 316
Query: 323 TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382
TEVELQ+ S D E D IFNYR+KYLP++QVAYH+PPRFP VI+ IR+G SLLF+R G
Sbjct: 317 TEVELQYSNSSDTDE-DTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFRRFG 375
Query: 383 LCDFARIDGWFLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
L D+AR+DGWFLPS SS+E K+G+T++GT+LFTDINLISGMEQTSFLFQQAS V
Sbjct: 376 LHDYARVDGWFLPSPVASLSSAENSEKFGNTKYGTVLFTDINLISGMEQTSFLFQQASAV 435
Query: 441 GFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGG 500
GFSHS ILRT++ HACSRFP+L N+ + L + SK A++K ++VFVIFGG
Sbjct: 436 GFSHSRILRTVVQHACSRFPSLVPCNNAWTALSRKLQPSKQIGAIHKGTSRQKVFVIFGG 495
Query: 501 DTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLP 560
DTSERQVSLMSGTNVWLNLQ F+D++VTPCLLA + S D +D +SR VW+LP
Sbjct: 496 DTSERQVSLMSGTNVWLNLQGFDDLDVTPCLLAPANGYFSSHDQVFSD---TSREVWTLP 552
Query: 561 YSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 620
YSLVLRHTTEEV AAC+EA EP+R T LR+QV+N+L L KH WF GFDIA E P+
Sbjct: 553 YSLVLRHTTEEVHAACVEATEPERVKMTKRLRDQVMNELGPALSKHDWFAGFDIAYEQPI 612
Query: 621 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
++S+ +WI KE +A VFIAVHGGIGEDGT+Q+LLE+ GVP+TGPG +AS+TC+DKVA+
Sbjct: 613 KYSLQQWIDHVKETEAVVFIAVHGGIGEDGTIQTLLESAGVPFTGPGPIASRTCIDKVAS 672
Query: 681 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
SLA++HLA GV TI KDVR E++LK+ +VDIW+EL +KL+ +T+CVKPARDGCSTGVA
Sbjct: 673 SLAVDHLASYGVHTIPKDVRATEEVLKSSLVDIWNELKAKLRTETVCVKPARDGCSTGVA 732
Query: 741 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800
RLCC +DL VY AL +P N SRAHG+IEMP PPPE LIFEPF+ETDEI+ S++
Sbjct: 733 RLCCPKDLEVYTNALRRKFQHLPANCLSRAHGVIEMPVPPPESLIFEPFIETDEIIISNK 792
Query: 801 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
N +A L+WKG + W+EITVGV+GK G MHSL PS+TVKESGDILSLEEKFQGGTGIN
Sbjct: 793 LGNGSARHLVWKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDILSLEEKFQGGTGIN 852
Query: 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
LTPPPA+IM +AL +CK+ IE++ANAL LEGFSRIDAFVNV +GEVL+IEVNTVPGMTP
Sbjct: 853 LTPPPATIMGEDALQRCKKSIEMMANALGLEGFSRIDAFVNVRSGEVLLIEVNTVPGMTP 912
Query: 921 STVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
STVLIHQAL+E+PP+YPH+FFR +LDL R
Sbjct: 913 STVLIHQALAEEPPVYPHKFFRTLLDLAFTR 943
>gi|115474235|ref|NP_001060716.1| Os07g0691200 [Oryza sativa Japonica Group]
gi|33146883|dbj|BAC79881.1| unknown protein [Oryza sativa Japonica Group]
gi|50509294|dbj|BAD30601.1| unknown protein [Oryza sativa Japonica Group]
gi|113612252|dbj|BAF22630.1| Os07g0691200 [Oryza sativa Japonica Group]
gi|222637729|gb|EEE67861.1| hypothetical protein OsJ_25672 [Oryza sativa Japonica Group]
Length = 946
Score = 1234 bits (3194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/879 (67%), Positives = 720/879 (81%), Gaps = 6/879 (0%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
GR LRVGL+CGGPS ERGISLNSARSVLDHIQG+DLLV CYYID +NAYAIS AQ+YSN
Sbjct: 70 GRPLRVGLVCGGPSPERGISLNSARSVLDHIQGEDLLVTCYYIDCGMNAYAISPAQLYSN 129
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
TP+DFDFKLESLAQGF SL +FA+HLAANVDIVFP IHG+FGEDGGIQE+LEK NVPFVG
Sbjct: 130 TPSDFDFKLESLAQGFQSLFDFAQHLAANVDIVFPVIHGKFGEDGGIQELLEKANVPFVG 189
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
T S+ C AFDKY+ASLE++ QGF+TVP+FL++ ++ +S+L WF + LD +GKVVV
Sbjct: 190 TPSKNCLLAFDKYNASLELNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVV 249
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KPT AGSSIGV VAYG D+ +KA+GII EGIDD+V++E+FLEGG+EFTAIV+DVG+ +
Sbjct: 250 KPTSAGSSIGVVVAYGANDAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANN 309
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PVVLLPTEVELQ ++D++E D IFNYRRKYLPT+QVAYHTPPRFP VI+ IR+G
Sbjct: 310 SEPVVLLPTEVELQSSSNIDIQE-DTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGV 368
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSF 432
S+LF+ LGL DFARIDGWFLP+ S+E K+G+T++G +LFTDINL++GMEQTSF
Sbjct: 369 SILFRCLGLRDFARIDGWFLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSF 428
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIR 492
LFQQ+SKVGFSHS ILRT++ HACSR+P+L ++ + L + +K EA+ K +
Sbjct: 429 LFQQSSKVGFSHSRILRTVVQHACSRYPSLVPCSNAWTALSRKIQAAKQAEAIQKGTSKK 488
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+VFVIFGGDTSERQVSLMSGTNVWLNLQ F+D++VTPCLL S SS + N+ +
Sbjct: 489 KVFVIFGGDTSERQVSLMSGTNVWLNLQGFDDLDVTPCLLTSGNGYSSFHNQNM---NGI 545
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR VW+LPYSLVLRHT EEV AACIEAI+P+R TS LR+QV+N+L + L K+ WF GF
Sbjct: 546 SRDVWTLPYSLVLRHTIEEVNAACIEAIDPERMELTSRLRDQVMNELGQSLSKYDWFAGF 605
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
DIAD+ P+++S+ +WI KE QA VFIAVHGGIGEDGT+QSLL + GVPYTGPG +AS+
Sbjct: 606 DIADKQPIKYSLQQWINHVKEAQAVVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQIASR 665
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
TCMDKVATSLA++HLA GV TI KD+R E++LK+ DIW++L +KLQ +T+CVKPAR
Sbjct: 666 TCMDKVATSLAVSHLASYGVHTIPKDLRATEEILKSSPDDIWNDLKAKLQTETVCVKPAR 725
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
DGCSTGVARLCC +DL VY ALE L R+P N SRAHG+IEMP PPE LIFEPF+ET
Sbjct: 726 DGCSTGVARLCCPKDLEVYANALERKLQRMPANCLSRAHGVIEMPVSPPESLIFEPFIET 785
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
DEI+ S++S + + L+WKG ++W+E+TVGV+GK G M SL PS+TVKESGDILSLEEK
Sbjct: 786 DEIIISTKSVDDSTRHLVWKGENKWLEVTVGVVGKRGEMLSLNPSITVKESGDILSLEEK 845
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
FQGGTGINLTPPP++IMS EAL KCK IE +AN L LEGFSRIDAFVNV NGE+L+IEV
Sbjct: 846 FQGGTGINLTPPPSTIMSEEALQKCKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEV 905
Query: 913 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
NTVPGMTPSTVLIHQAL+E+PP+YPH+FFR +LDL R
Sbjct: 906 NTVPGMTPSTVLIHQALTEKPPIYPHKFFRTLLDLAFAR 944
>gi|218200303|gb|EEC82730.1| hypothetical protein OsI_27428 [Oryza sativa Indica Group]
Length = 946
Score = 1232 bits (3188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/879 (67%), Positives = 719/879 (81%), Gaps = 6/879 (0%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
GR LRVGL+CGGPS ERGISLNSARSVLDHIQG+DLLV CYYID +NAYAIS AQ+YSN
Sbjct: 70 GRPLRVGLVCGGPSPERGISLNSARSVLDHIQGEDLLVTCYYIDCGMNAYAISPAQLYSN 129
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
TP+DFDFKLESLAQGF SL +FA+HLA NVDIVFP IHG+FGEDGGIQE+LEK NVPFVG
Sbjct: 130 TPSDFDFKLESLAQGFQSLFDFAQHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVG 189
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
T S+ C AFDKY+ASLE++ QGF+TVP+FL++ ++ +S+L WF + LD +GKVVV
Sbjct: 190 TPSKNCLLAFDKYNASLELNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVV 249
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KPT AGSSIGV VAYG D+ +KA+GII EGIDD+V++E+FLEGG+EFTAIV+DVG+ +
Sbjct: 250 KPTSAGSSIGVVVAYGANDAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANN 309
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PVVLLPTEVELQ ++D++E D IFNYRRKYLPT+QVAYHTPPRFP VI+ IR+G
Sbjct: 310 SEPVVLLPTEVELQSSSNIDIQE-DTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGV 368
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSF 432
S+LF+ LGL DFARIDGWFLP+ S+E K+G+T++G +LFTDINL++GMEQTSF
Sbjct: 369 SILFRCLGLRDFARIDGWFLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSF 428
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIR 492
LFQQ+SKVGFSHS ILRT++ HACSR+P+L ++ + L + +K EA+ K +
Sbjct: 429 LFQQSSKVGFSHSRILRTVVQHACSRYPSLVPCSNAWTALSRKIQAAKQAEAIQKGTSKK 488
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+VFVIFGGDTSERQVSLMSGTNVWLNLQ F+D++VTPCLL S SS + N+ +
Sbjct: 489 KVFVIFGGDTSERQVSLMSGTNVWLNLQGFDDLDVTPCLLTSGNGYSSFHNQNM---NGI 545
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR VW+LPYSLVLRHT EEV AACIEAI+P+R TS LR+QV+N+L + L K+ WF GF
Sbjct: 546 SRDVWTLPYSLVLRHTIEEVNAACIEAIDPERMELTSRLRDQVMNELGQSLSKYDWFAGF 605
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
DIAD+ P+++S+ +WI KE QA VFIAVHGGIGEDGT+QSLL + GVPYTGPG +AS+
Sbjct: 606 DIADKQPIKYSLQQWINHVKEAQAVVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQIASR 665
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
TCMDKVATSLA++HLA GV TI KD+R E++LK+ DIW++L +KLQ +T+CVKPAR
Sbjct: 666 TCMDKVATSLAVSHLASYGVHTIPKDLRATEEILKSSPDDIWNDLKAKLQTETVCVKPAR 725
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
DGCSTGVARLCC +DL VY ALE L R+P N SRAHG+IEMP PPE LIFEPF+ET
Sbjct: 726 DGCSTGVARLCCPKDLEVYANALERKLQRMPANCLSRAHGVIEMPVSPPESLIFEPFIET 785
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
DEI+ S++S + + L+WKG ++W+E+TVGV+GK G M SL PS+TVKESGDILSLEEK
Sbjct: 786 DEIIISTKSVDDSTRHLVWKGENKWLEVTVGVVGKRGEMLSLNPSITVKESGDILSLEEK 845
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
FQGGTGINLTPPP++IMS EAL KCK IE +AN L LEGFSRIDAFVNV NGE+L+IEV
Sbjct: 846 FQGGTGINLTPPPSTIMSEEALQKCKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEV 905
Query: 913 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
NTVPGMTPSTVLIHQAL+E+PP+YPH+FFR +LDL R
Sbjct: 906 NTVPGMTPSTVLIHQALTEKPPIYPHKFFRTLLDLAFAR 944
>gi|414591253|tpg|DAA41824.1| TPA: hypothetical protein ZEAMMB73_402779 [Zea mays]
Length = 950
Score = 1217 bits (3148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/875 (66%), Positives = 713/875 (81%), Gaps = 6/875 (0%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
GR LRVGL+CGGPS ERG+SLNSARSVLDHIQG+DL+V CYYID + A+AIS AQ+YSN
Sbjct: 74 GRPLRVGLVCGGPSGERGVSLNSARSVLDHIQGEDLVVCCYYIDCAMKAFAISPAQLYSN 133
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
TP+DFDFKLESLAQ F SLS+FAEHLA NVDIVFP IHG+FGEDGGIQE+LEK NVPFVG
Sbjct: 134 TPSDFDFKLESLAQEFDSLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVG 193
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
T S+ C++AFDK++ASLE++ QGF+TVP+FL++ ++ + EL WF T L+ +GK +V
Sbjct: 194 TPSKECQRAFDKHNASLELNAQGFLTVPNFLVEKDKLAKPELEAWFQTVNLNKENGKTIV 253
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KPTRAGSSIGV VAYGV D+ +KA+ II EGIDD+V++E+F+EGG+EFTAIV+DVG +
Sbjct: 254 KPTRAGSSIGVVVAYGVNDAAQKAEEIISEGIDDKVIIEVFIEGGTEFTAIVVDVGIANN 313
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PVVLLPTEVELQ+ + D +E D IFNYR+KYLP++QVAYH+PPRFP VI+ IR+G
Sbjct: 314 SEPVVLLPTEVELQYSNNSDTKE-DTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGI 372
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSF 432
SLLF RLGL D+ARIDGWFLPS +E K+G+T++G++LFTDINLISGMEQTSF
Sbjct: 373 SLLFCRLGLHDYARIDGWFLPSPVASLPPAENSDKFGNTKYGSVLFTDINLISGMEQTSF 432
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIR 492
LFQQAS VGFSHS ILRT++ HACSRFP+L N+ + L + SK EA++K +
Sbjct: 433 LFQQASAVGFSHSRILRTVVQHACSRFPSLLPCNNAWTALSRKLQPSKQVEAIHKGTSRQ 492
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+VFVIFGGDTSERQVSLMSGTNVWLNLQ F+D++VTPCLLA + S D + +D S
Sbjct: 493 KVFVIFGGDTSERQVSLMSGTNVWLNLQGFDDLDVTPCLLAPAHGYFSSHDQDFSD---S 549
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR VW+LPYSLVLRHTTEEV AAC+EA EP+R T LR+QV+N+L L KH WF GF
Sbjct: 550 SREVWTLPYSLVLRHTTEEVHAACVEATEPERVEITKRLRDQVMNELGSALSKHDWFAGF 609
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
DIA E P+++S+ +WI KE +A VFIAVHGGIGEDGT+Q+LLE+ GVPYTGPG +AS+
Sbjct: 610 DIAYEQPIKYSLQQWIDHVKETEAVVFIAVHGGIGEDGTIQTLLESAGVPYTGPGPIASR 669
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
TC+DKVA+SLA++HLA G+ I KDVR E++L + +VDIW+EL +KL+ +T+CVKPAR
Sbjct: 670 TCIDKVASSLAVDHLASYGIRIIPKDVRATEEVLNSSLVDIWNELKAKLETETVCVKPAR 729
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
DGCSTGVARLCC +DL VY AL +P N SRAHG+IEMP P PE LIFEPF+ET
Sbjct: 730 DGCSTGVARLCCPKDLEVYTNALRRKFQHLPANCLSRAHGVIEMPVPSPESLIFEPFIET 789
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
DEI+ +++ + +A L+WKG + W+EITVGV+GK G MHSL PS+TVKESGDILSLEEK
Sbjct: 790 DEIIIANKLEDGSARHLVWKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDILSLEEK 849
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
FQGGTGINLTPPPA+IM +AL +CK+ IE +ANAL LEGFSRIDAFVNV +GEVL+IEV
Sbjct: 850 FQGGTGINLTPPPATIMGEDALQRCKKSIETMANALGLEGFSRIDAFVNVRSGEVLLIEV 909
Query: 913 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 947
NTVPGMTPSTVLIHQAL+E+PP+YPH+FFR +LDL
Sbjct: 910 NTVPGMTPSTVLIHQALAEEPPVYPHRFFRTLLDL 944
>gi|42572327|ref|NP_974259.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
gi|332641165|gb|AEE74686.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
Length = 845
Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/863 (65%), Positives = 663/863 (76%), Gaps = 34/863 (3%)
Query: 1 MTSLAFSSSFSFLRNDAVGG-----ITFRSPKVLSRNRKLKLKKSACRYATKTTSLGVEG 55
M S+A SFS GG + + L N+K L +S C LG+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCML------LGMNK 54
Query: 56 ARASAEVLEDQTMAKEARGG----RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLL 111
R S + +T++K G + LRVGLICGGPSAERGISLNSARSVLDHIQGD +
Sbjct: 55 YRGSGAI---RTVSKAVGYGQEMSKSLRVGLICGGPSAERGISLNSARSVLDHIQGDGIN 111
Query: 112 VRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTI 171
V CYYID +L A+AISSAQVYSNTP+DFDFKLESLAQGF SLSE AEHL + VDIVFP I
Sbjct: 112 VSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGFSSLSELAEHLVSAVDIVFPVI 171
Query: 172 HGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231
HGRFGEDGGIQE+LE +N+PFVGTGSR C +AFDKY+ASLE+ + GF+TVP++L+QG+ V
Sbjct: 172 HGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLVQGTGV 231
Query: 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV DS+KKA +ILEGIDDRVV
Sbjct: 232 DKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGIDDRVV 291
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G D +E +AIF+YRRKYLPT
Sbjct: 292 VEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGIGDPKE-NAIFDYRRKYLPT 350
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
QQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW+L ++++ S G T
Sbjct: 351 QQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGT 410
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH 471
+ G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRTI+ ACSRFP+L YN S
Sbjct: 411 KSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIVHRACSRFPHLDWYNYGYSQ 470
Query: 472 LPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCL 531
L S+ L E ++VFVIFGGDTSERQVS+MSGTNVW+NLQ + D+ VTPCL
Sbjct: 471 LLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSGTNVWVNLQRYVDLNVTPCL 524
Query: 532 LASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHL 591
L+ S+ S G +N+ + R VW LPYS+VLRHT EEVLAAC+EA+EP RA FTS L
Sbjct: 525 LSPSLSNSLGASSNLDN-----REVWVLPYSVVLRHTAEEVLAACLEAVEPVRALFTSLL 579
Query: 592 RNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651
+ QV+ DL++G K SWF GFDI DELP ++S+ EWIK AKE QATVFIAVHGGIGEDGT
Sbjct: 580 QKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGT 639
Query: 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711
LQ LLE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+ TI+KDV+R ED++
Sbjct: 640 LQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIMHETFP 699
Query: 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAH 771
++W EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV+AL++C+ RIPPN+ S+ H
Sbjct: 700 NVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNTLSKTH 759
Query: 772 GMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 831
GMIEMPNP PE LIFEPFVETDEI+ SS K +L WKG RWVE+TVGVIGK GSM
Sbjct: 760 GMIEMPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWKGRRRWVEMTVGVIGKRGSM 815
Query: 832 HSLMPSVTVKESGDILSLEEKFQ 854
HSL PS+TVKESGDILSLEEKFQ
Sbjct: 816 HSLSPSLTVKESGDILSLEEKFQ 838
>gi|26452707|dbj|BAC43436.1| unknown protein [Arabidopsis thaliana]
Length = 844
Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/863 (64%), Positives = 663/863 (76%), Gaps = 35/863 (4%)
Query: 1 MTSLAFSSSFSFLRNDAVGG-----ITFRSPKVLSRNRKLKLKKSACRYATKTTSLGVEG 55
M S+A SFS GG + + L N+K L +S C LG+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCML------LGMNK 54
Query: 56 ARASAEVLEDQTMAKEARGG----RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLL 111
R S + +T++K G + LRVGLICGGPSAERGISLNSARSVLDHIQGD +
Sbjct: 55 YRGSGAI---RTVSKAVGYGQEMSKSLRVGLICGGPSAERGISLNSARSVLDHIQGDGIN 111
Query: 112 VRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTI 171
V CYYID +L A+AISSAQVYSNTP+DFDFKLESLAQGF SLSE AEHL + VDIVFP I
Sbjct: 112 VSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGFSSLSELAEHLVSAVDIVFPVI 171
Query: 172 HGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231
HGRFGEDGGIQE+LE +N+PFVGTGSR C +AFDKY+ASLE+ + GF+TVP++L+QG+ V
Sbjct: 172 HGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLVQGTGV 231
Query: 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV DS+KKA +ILEGIDDRVV
Sbjct: 232 DKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKAT-LILEGIDDRVV 290
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G D +E +AIF+YRRKYLPT
Sbjct: 291 VEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGIGDPKE-NAIFDYRRKYLPT 349
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
QQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW+L ++++ S G T
Sbjct: 350 QQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGT 409
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH 471
+ G I+FTDINLISGM+QTSFLFQQASKVGFSHSNILRTI+ ACSRFP+L YN S
Sbjct: 410 KSGDIIFTDINLISGMKQTSFLFQQASKVGFSHSNILRTIVHRACSRFPHLDWYNYGYSQ 469
Query: 472 LPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCL 531
L S+ L E ++VFVIFGGDTSERQVS+MSGTNVW+NLQ + D+ VTPCL
Sbjct: 470 LLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSGTNVWVNLQRYVDLNVTPCL 523
Query: 532 LASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHL 591
L+ S+ S G +N+ + R VW LPYS+VLRHT EEVLAAC+EA+EP RA FTS L
Sbjct: 524 LSPSLSNSLGASSNLDN-----REVWVLPYSVVLRHTAEEVLAACLEAVEPVRALFTSLL 578
Query: 592 RNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651
+ QV+ DL++G K SWF GFDI DELP ++S+ EWIK AKE QATVFIAVHGGIGEDGT
Sbjct: 579 QKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGT 638
Query: 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711
LQ LLE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+ TI+KDV+R ED++
Sbjct: 639 LQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIMHETFP 698
Query: 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAH 771
++W EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV+AL++C+ RIPPN+ S+ H
Sbjct: 699 NVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNTLSKTH 758
Query: 772 GMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 831
GMIEMPNP PE LIFEPFVETDEI+ SS K +L WKG RWVE+TVGVIGK GSM
Sbjct: 759 GMIEMPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWKGRRRWVEMTVGVIGKHGSM 814
Query: 832 HSLMPSVTVKESGDILSLEEKFQ 854
HSL PS+TVKESGDILSLEEKFQ
Sbjct: 815 HSLSPSLTVKESGDILSLEEKFQ 837
>gi|414591254|tpg|DAA41825.1| TPA: hypothetical protein ZEAMMB73_402779 [Zea mays]
Length = 853
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/783 (65%), Positives = 629/783 (80%), Gaps = 6/783 (0%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
GR LRVGL+CGGPS ERG+SLNSARSVLDHIQG+DL+V CYYID + A+AIS AQ+YSN
Sbjct: 74 GRPLRVGLVCGGPSGERGVSLNSARSVLDHIQGEDLVVCCYYIDCAMKAFAISPAQLYSN 133
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
TP+DFDFKLESLAQ F SLS+FAEHLA NVDIVFP IHG+FGEDGGIQE+LEK NVPFVG
Sbjct: 134 TPSDFDFKLESLAQEFDSLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVG 193
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
T S+ C++AFDK++ASLE++ QGF+TVP+FL++ ++ + EL WF T L+ +GK +V
Sbjct: 194 TPSKECQRAFDKHNASLELNAQGFLTVPNFLVEKDKLAKPELEAWFQTVNLNKENGKTIV 253
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KPTRAGSSIGV VAYGV D+ +KA+ II EGIDD+V++E+F+EGG+EFTAIV+DVG +
Sbjct: 254 KPTRAGSSIGVVVAYGVNDAAQKAEEIISEGIDDKVIIEVFIEGGTEFTAIVVDVGIANN 313
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PVVLLPTEVELQ+ + D +E D IFNYR+KYLP++QVAYH+PPRFP VI+ IR+G
Sbjct: 314 SEPVVLLPTEVELQYSNNSDTKE-DTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGI 372
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSF 432
SLLF RLGL D+ARIDGWFLPS +E K+G+T++G++LFTDINLISGMEQTSF
Sbjct: 373 SLLFCRLGLHDYARIDGWFLPSPVASLPPAENSDKFGNTKYGSVLFTDINLISGMEQTSF 432
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIR 492
LFQQAS VGFSHS ILRT++ HACSRFP+L N+ + L + SK EA++K +
Sbjct: 433 LFQQASAVGFSHSRILRTVVQHACSRFPSLLPCNNAWTALSRKLQPSKQVEAIHKGTSRQ 492
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+VFVIFGGDTSERQVSLMSGTNVWLNLQ F+D++VTPCLLA + S D + +D S
Sbjct: 493 KVFVIFGGDTSERQVSLMSGTNVWLNLQGFDDLDVTPCLLAPAHGYFSSHDQDFSD---S 549
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR VW+LPYSLVLRHTTEEV AAC+EA EP+R T LR+QV+N+L L KH WF GF
Sbjct: 550 SREVWTLPYSLVLRHTTEEVHAACVEATEPERVEITKRLRDQVMNELGSALSKHDWFAGF 609
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
DIA E P+++S+ +WI KE +A VFIAVHGGIGEDGT+Q+LLE+ GVPYTGPG +AS+
Sbjct: 610 DIAYEQPIKYSLQQWIDHVKETEAVVFIAVHGGIGEDGTIQTLLESAGVPYTGPGPIASR 669
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
TC+DKVA+SLA++HLA G+ I KDVR E++L + +VDIW+EL +KL+ +T+CVKPAR
Sbjct: 670 TCIDKVASSLAVDHLASYGIRIIPKDVRATEEVLNSSLVDIWNELKAKLETETVCVKPAR 729
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
DGCSTGVARLCC +DL VY AL +P N SRAHG+IEMP P PE LIFEPF+ET
Sbjct: 730 DGCSTGVARLCCPKDLEVYTNALRRKFQHLPANCLSRAHGVIEMPVPSPESLIFEPFIET 789
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
DEI+ +++ + +A L+WKG + W+EITVGV+GK G MHSL PS+TVKESGDILSLEEK
Sbjct: 790 DEIIIANKLEDGSARHLVWKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDILSLEEK 849
Query: 853 FQG 855
FQG
Sbjct: 850 FQG 852
>gi|302814744|ref|XP_002989055.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
gi|300143156|gb|EFJ09849.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
Length = 857
Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/895 (54%), Positives = 641/895 (71%), Gaps = 46/895 (5%)
Query: 60 AEVLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119
++ LED E + L+V LICGGPSAERGISLNSARSVLDH+Q +D+ V CYY+D+
Sbjct: 6 SQSLEDVKETSEVE--KPLKVALICGGPSAERGISLNSARSVLDHLQAEDVEVDCYYMDQ 63
Query: 120 NLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDG 179
L AYAIS +Q+Y NTP+DFDFKL SLAQ F S ++F L ++VDIVFP IHG+FGEDG
Sbjct: 64 QLRAYAISPSQMYCNTPSDFDFKLHSLAQCFTSQADFLRRLKSSVDIVFPVIHGKFGEDG 123
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
G+QE+LE +PFVGTGS A R AFDKY+A+ E+S+ GF+T+PSFL+ E++++ L W
Sbjct: 124 GLQELLESAGIPFVGTGSSAARCAFDKYEAAKELSRFGFVTIPSFLIDSPEIDKAALVEW 183
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGG 299
F N L+P+S +VVVKP ++GSSIGVTVA+G+ + ++ A+ ++ EGIDDR+VVE+FL+G
Sbjct: 184 FKANDLNPSSDRVVVKPAKSGSSIGVTVAHGLDEVIRDAETLLKEGIDDRIVVEVFLQGC 243
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
+EFT I+LD GSG PV LLPTEVEL + EK IFNYRRKYLPT+QV+YHTP
Sbjct: 244 TEFTVIILDTGSGEQVQPVALLPTEVELLHADGQSIGEK--IFNYRRKYLPTRQVSYHTP 301
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
PRFP+ I SIR GAS LF L L DFAR+DGW LP S+ S++ ++F+
Sbjct: 302 PRFPVQTIQSIRSGASKLFTLLNLRDFARVDGWLLPPSSSFNKSNDF--------LVVFS 353
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH-LPGRSSG 478
D+NL+SGMEQTSFLFQQA++VG SH ++LR ++ A +R+P+L+++ V H + G
Sbjct: 354 DVNLVSGMEQTSFLFQQAAQVGLSHRDVLRLVLNRARTRYPSLSNFPQVGLHEVDGTPQT 413
Query: 479 SKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDC 538
SK R+V+V+FGG +SERQVSLMSGTNVWLNL+ D++V+P +L
Sbjct: 414 SK-----------RKVYVLFGGGSSERQVSLMSGTNVWLNLRGCKDLDVSPFVLVPQSRG 462
Query: 539 SSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVND 598
S SR +W+LPY+ VLRHT EEV+ C+EA++P +A + L+ QV+++
Sbjct: 463 ES----------PESRSIWALPYACVLRHTVEEVVDGCLEALDPGFSAVSGSLKAQVMSE 512
Query: 599 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 658
L K +++ +P + S++EWI+ AK+ A VFIAVHG IGE+G LQ +LEA
Sbjct: 513 LSSSGSK----VDYNVGSGVPTKLSMSEWIQHAKDEDAIVFIAVHGDIGENGILQEMLEA 568
Query: 659 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKT--PIVDIWHE 716
+G+P+TG GV AS+ CMDK T ++ L+ GV + + V + +LL +W
Sbjct: 569 KGIPFTGSGVKASRICMDKAVTGHTISPLSSNGVYSAQRVVYKTAELLHDCGDNRQLWLS 628
Query: 717 LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEM 776
L KL+ ++CVKPA DGCSTGVARLCCA DLTVY+ AL+E L R+ P S + HG+IE+
Sbjct: 629 LQDKLEDSSICVKPAADGCSTGVARLCCARDLTVYLTALKEKLPRLLPGSLGKPHGIIEL 688
Query: 777 PNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 836
P P+ LIFEPF++TD+IL +S ++ W+G RWVEIT GVIGK G+MH+L P
Sbjct: 689 PTTIPDSLIFEPFIQTDDILVCEES------QIAWEGKHRWVEITAGVIGKKGAMHALHP 742
Query: 837 SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRI 896
S+T+KESGDILSLEEKFQGGTG+NLTPPP I S EA+ C++RIEL+AN LQLEGF+RI
Sbjct: 743 SITLKESGDILSLEEKFQGGTGVNLTPPPPLICSEEAVRSCRERIELVANTLQLEGFARI 802
Query: 897 DAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
DAF+NVD GEV++IEVNTVPGMTPSTVLIHQ L+E P++P +FFR V+DLGS+R
Sbjct: 803 DAFMNVDTGEVIVIEVNTVPGMTPSTVLIHQVLAETTPLFPREFFRAVVDLGSKR 857
>gi|302803947|ref|XP_002983726.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
gi|300148563|gb|EFJ15222.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
Length = 857
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/895 (54%), Positives = 642/895 (71%), Gaps = 46/895 (5%)
Query: 60 AEVLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119
++ LED E + L+V LICGGPSAERGISLNSARSVLDH+Q +D+ V CYY+D+
Sbjct: 6 SQSLEDVKDTSEVE--KPLKVALICGGPSAERGISLNSARSVLDHLQAEDVEVDCYYMDQ 63
Query: 120 NLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDG 179
L AYAIS +Q+Y NTP+DFDFKL SLAQ F S ++F L ++VDIVFP IHG+FGEDG
Sbjct: 64 QLRAYAISPSQMYCNTPSDFDFKLHSLAQCFTSQADFLRRLKSSVDIVFPVIHGKFGEDG 123
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
G+QE+LE +PFVGTGS A R AFDKY+A+ E+S+ GF+T+PSFL+ E++++ L W
Sbjct: 124 GLQELLESAGIPFVGTGSSAARCAFDKYEAAKELSRHGFVTIPSFLIDSPEIDKAALVEW 183
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGG 299
F N L+P+S +VVVKP ++GSSIGVTVA+G+ + ++ A+ ++ EGIDDR+VVE+FL+G
Sbjct: 184 FKANDLNPSSDRVVVKPAKSGSSIGVTVAHGLDEVIRDAETLLKEGIDDRIVVEVFLQGC 243
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
+EFT I+LD GSG PV LLPTEVEL + EK IFNYRRKYLPT+QV+YHTP
Sbjct: 244 TEFTVIILDTGSGEQVQPVALLPTEVELLHGDGQSIGEK--IFNYRRKYLPTRQVSYHTP 301
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
PRFP+ I SIR GAS LF L L DFAR+DGW LP S+ S++ ++F+
Sbjct: 302 PRFPVQTIQSIRSGASKLFTLLNLRDFARVDGWLLPPSSSFNKSNDF--------LVVFS 353
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH-LPGRSSG 478
D+NL+SGMEQTSFLFQQA++VG SH ++LR ++ A +R+P+L+++ V H + G
Sbjct: 354 DVNLVSGMEQTSFLFQQAAQVGLSHRDVLRLVLNRARTRYPSLSNFPQVGLHGVDGSPQT 413
Query: 479 SKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDC 538
SK R+V+V+FGG +SERQVSLMSGTNVWLNL+ D++V+P +LA
Sbjct: 414 SK-----------RKVYVLFGGGSSERQVSLMSGTNVWLNLRGCKDLDVSPFVLAPQSRG 462
Query: 539 SSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVND 598
S SR +W+LPY+ VLRHT EEV+ C+EA++P +A + L+ QV+++
Sbjct: 463 ES----------PESRSIWALPYACVLRHTVEEVVDGCLEALDPRFSAVSGSLKAQVMSE 512
Query: 599 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 658
L K +++ +P + S++EWI+ AK++ A VFIAVHG IGE+G LQ +LEA
Sbjct: 513 LSSSGSK----VDYNVGSGVPTKLSMSEWIQHAKDDDAIVFIAVHGDIGENGILQEMLEA 568
Query: 659 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKT--PIVDIWHE 716
+ +P+TG GV AS+ CMDK T ++ L+ GV + + V + +LL +W
Sbjct: 569 KRIPFTGSGVKASRICMDKAVTGHTISPLSSNGVYSAKRVVYKTAELLHDCGDNSQLWLS 628
Query: 717 LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEM 776
L KL+ ++CVKPA DGCSTGVARLCCA DLTVY+ AL+E L R+ P S + HG+IE+
Sbjct: 629 LQDKLEDSSICVKPAADGCSTGVARLCCARDLTVYLTALKEKLPRLLPGSLGKPHGIIEL 688
Query: 777 PNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 836
P P+ LIFEPF++TD+IL +S ++ W+G RWVEIT GVIGK G+MH+L P
Sbjct: 689 PATIPDSLIFEPFIQTDDILVCEES------QIAWEGKHRWVEITAGVIGKKGAMHALHP 742
Query: 837 SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRI 896
S+T+KESGDILSLEEKFQGGTG+NLTPPP I S EA+ C++RIEL+AN LQLEGF+RI
Sbjct: 743 SITLKESGDILSLEEKFQGGTGVNLTPPPPLICSEEAVRSCRERIELVANTLQLEGFARI 802
Query: 897 DAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
DAF+NVD GEV++IEVNTVPGMTPSTVLIHQ L+E P++P +FFR V+DLGS+R
Sbjct: 803 DAFMNVDTGEVIVIEVNTVPGMTPSTVLIHQVLAETTPLFPREFFRAVVDLGSKR 857
>gi|168012025|ref|XP_001758703.1| predicted protein [Physcomitrella patens subsp. patens]
gi|76880176|dbj|BAE45860.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
gi|162690313|gb|EDQ76681.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 966
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/891 (52%), Positives = 627/891 (70%), Gaps = 25/891 (2%)
Query: 64 EDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNA 123
ED+ E R G LRV L+CGGPS ERGISLNSARSVLDH++G D+ V CYY+++ L
Sbjct: 98 EDRLKGDENRSG-TLRVALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEP 156
Query: 124 YAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
+ I SA +YSNTP DFDFK+ S A+ F S +EF EHL A DIVFP +HGRFGEDGGIQ
Sbjct: 157 FGIPSALMYSNTPEDFDFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQA 216
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+LE +P++GTG+ A + AFDKYDA+ EM+ GF T+P FL++ +V+ + L WF N
Sbjct: 217 LLESAGLPYIGTGAAAAQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDN 276
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
++ NSG+VVVKP R+GSS+GV+VA G+ +++ A+ + +G +DRVV+E+F EG EFT
Sbjct: 277 NINANSGRVVVKPARSGSSVGVSVAEGLDTAVQHAEALFNKGGNDRVVIEMFAEGALEFT 336
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQ-FQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
A+VLDVG G + PV L PTEVEL D + AIFNYRRKYLPT+QV+YHTPPRF
Sbjct: 337 ALVLDVGFGNETRPVALFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTPPRF 396
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
IN IR A+ LF+ L L D AR+DGW LP V SE TI+F+DIN
Sbjct: 397 SEETINKIRNRAADLFRILNLRDIARVDGWLLP---QVGGQSE---------TIIFSDIN 444
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPT 482
L+SGMEQTS LF QAS VG +H +ILRT++ AC+R+P + S+ S + +S +K
Sbjct: 445 LMSGMEQTSILFMQASLVGLAHVDILRTLLRRACTRYPTIPLPMSIGSSMSLSNSFAKVD 504
Query: 483 EALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGM 542
+K ++VFV+FGGD+SERQVSL+SGTNVWLNL+A+ND++V+P LLA + +G+
Sbjct: 505 PCTSK----QKVFVLFGGDSSERQVSLISGTNVWLNLRAWNDLDVSPFLLAPAE--PNGI 558
Query: 543 DANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEG 602
+ + VW+LPY+ VLRHT EEV+ C+E ++ A + LR+++++DL +G
Sbjct: 559 KPKMGTDRVEDKTVWALPYAAVLRHTVEEVVEGCVENLKSQAIAKVTSLRDRILSDL-QG 617
Query: 603 LKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVP 662
K S + + ELP ++ ++I+ AK+N A VFIAVHG IGE+GTLQ LL A GV
Sbjct: 618 SAKASLLSN-EGHMELPSMITLEKFIEEAKQNDAVVFIAVHGSIGENGTLQELLAASGVR 676
Query: 663 YTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ 722
+TG AS+ CMDK AT A++HL+ G+ T K +R+ ++L+ +W EL +L+
Sbjct: 677 HTGSAAEASRLCMDKAATGAAISHLSSQGIYTAAKALRKVHEILQKED-QVWMELKEELK 735
Query: 723 CKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782
LCVKP DGCSTGVA+L CAEDL Y KA++ +IPP +F +AHG+IEMP PPE
Sbjct: 736 ANDLCVKPVGDGCSTGVAKLSCAEDLAAYAKAVQTGQSQIPPGTFLKAHGIIEMPGVPPE 795
Query: 783 ILIFEPFVETDEILFSSQSTNKNAD--RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
L+FEPF+ETD I S +T +++ L+W+G SRW+E+TVGV+G G MH+L PS+TV
Sbjct: 796 RLLFEPFIETDHIAVLSSTTGEDSKDGELIWEGKSRWIEVTVGVLGVQGVMHALNPSITV 855
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 900
KE+G IL+LEEKFQGGTGINLTPPP S+ + EA+ CK+RIE++A L L+GF+RIDAF+
Sbjct: 856 KETGSILTLEEKFQGGTGINLTPPPPSLATEEAIAGCKKRIEIVARTLGLDGFARIDAFM 915
Query: 901 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
+ D GEV+IIE NTVPGMTPSTVLIHQAL+E P MYP FFRKV+DL ++
Sbjct: 916 HADTGEVIIIEANTVPGMTPSTVLIHQALAETPAMYPKTFFRKVVDLALQK 966
>gi|414591255|tpg|DAA41826.1| TPA: hypothetical protein ZEAMMB73_402779, partial [Zea mays]
Length = 680
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/593 (65%), Positives = 478/593 (80%), Gaps = 6/593 (1%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
GR LRVGL+CGGPS ERG+SLNSARSVLDHIQG+DL+V CYYID + A+AIS AQ+YSN
Sbjct: 74 GRPLRVGLVCGGPSGERGVSLNSARSVLDHIQGEDLVVCCYYIDCAMKAFAISPAQLYSN 133
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
TP+DFDFKLESLAQ F SLS+FAEHLA NVDIVFP IHG+FGEDGGIQE+LEK NVPFVG
Sbjct: 134 TPSDFDFKLESLAQEFDSLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVG 193
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
T S+ C++AFDK++ASLE++ QGF+TVP+FL++ ++ + EL WF T L+ +GK +V
Sbjct: 194 TPSKECQRAFDKHNASLELNAQGFLTVPNFLVEKDKLAKPELEAWFQTVNLNKENGKTIV 253
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KPTRAGSSIGV VAYGV D+ +KA+ II EGIDD+V++E+F+EGG+EFTAIV+DVG +
Sbjct: 254 KPTRAGSSIGVVVAYGVNDAAQKAEEIISEGIDDKVIIEVFIEGGTEFTAIVVDVGIANN 313
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PVVLLPTEVELQ+ + D +E D IFNYR+KYLP++QVAYH+PPRFP VI+ IR+G
Sbjct: 314 SEPVVLLPTEVELQYSNNSDTKE-DTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGI 372
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSF 432
SLLF RLGL D+ARIDGWFLPS +E K+G+T++G++LFTDINLISGMEQTSF
Sbjct: 373 SLLFCRLGLHDYARIDGWFLPSPVASLPPAENSDKFGNTKYGSVLFTDINLISGMEQTSF 432
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIR 492
LFQQAS VGFSHS ILRT++ HACSRFP+L N+ + L + SK EA++K +
Sbjct: 433 LFQQASAVGFSHSRILRTVVQHACSRFPSLLPCNNAWTALSRKLQPSKQVEAIHKGTSRQ 492
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+VFVIFGGDTSERQVSLMSGTNVWLNLQ F+D++VTPCLLA + S D + +D S
Sbjct: 493 KVFVIFGGDTSERQVSLMSGTNVWLNLQGFDDLDVTPCLLAPAHGYFSSHDQDFSD---S 549
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR VW+LPYSLVLRHTTEEV AAC+EA EP+R T LR+QV+N+L L KH WF GF
Sbjct: 550 SREVWTLPYSLVLRHTTEEVHAACVEATEPERVEITKRLRDQVMNELGSALSKHDWFAGF 609
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTG 665
DIA E P+++S+ +WI KE +A VFIAVHGGIGEDGT+Q+LLE+ GVPYTG
Sbjct: 610 DIAYEQPIKYSLQQWIDHVKETEAVVFIAVHGGIGEDGTIQTLLESAGVPYTG 662
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 149/397 (37%), Gaps = 91/397 (22%)
Query: 564 VLRHTTEEVLAACIEAIEPDRAAFT---SHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 620
VL H E L C I+ AF + L + +D K S FD
Sbjct: 100 VLDHIQGEDLVVCCYYIDCAMKAFAISPAQLYSNTPSDF--DFKLESLAQEFD------- 150
Query: 621 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
S++++ + N VF +HG GEDG +Q LLE VP+ G + DK
Sbjct: 151 --SLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECQRAFDKHNA 208
Query: 681 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT--SKLQCKTLCVKPARDGCSTG 738
SL LN G LT+ + K+ L K P ++ W + +K KT+ VKP R G S G
Sbjct: 209 SLELNA---QGFLTVPNFLVEKDKLAK-PELEAWFQTVNLNKENGKTI-VKPTRAGSSIG 263
Query: 739 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 798
V A + + EE + + G+ + +I E F+E
Sbjct: 264 VV---VAYGVNDAAQKAEEII----------SEGIDDK-------VIIEVFIE------- 296
Query: 799 SQSTNKNADRLMWKGNSRWVEITVGV-IGKCGSMHSLMPS-VTVKESGD-------ILSL 849
G + + I V V I L+P+ V ++ S + I +
Sbjct: 297 --------------GGTEFTAIVVDVGIANNSEPVVLLPTEVELQYSNNSDTKEDTIFNY 342
Query: 850 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA----------- 898
+K+ + PP E +D +Q I L+ L L ++RID
Sbjct: 343 RKKYLPSRQVAYHSPPR--FPAEVIDCIRQGISLLFCRLGLHDYARIDGWFLPSPVASLP 400
Query: 899 -------FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
F N G VL ++N + GM ++ L QA
Sbjct: 401 PAENSDKFGNTKYGSVLFTDINLISGMEQTSFLFQQA 437
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
SL ++ +H+ +VF +HG GEDG IQ +LE VP+ G+
Sbjct: 620 SLQQWIDHVKETEAVVFIAVHGGIGEDGTIQTLLESAGVPYTGS 663
>gi|18398265|ref|NP_566334.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
gi|26451726|dbj|BAC42958.1| unknown protein [Arabidopsis thaliana]
gi|28973361|gb|AAO64005.1| unknown protein [Arabidopsis thaliana]
gi|332641164|gb|AEE74685.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
Length = 519
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/534 (63%), Positives = 401/534 (75%), Gaps = 25/534 (4%)
Query: 1 MTSLAFSSSFSFLRNDAVGG-----ITFRSPKVLSRNRKLKLKKSACRYATKTTSLGVEG 55
M S+A SFS GG + + L N+K L +S C LG+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCML------LGMNK 54
Query: 56 ARASAEVLEDQTMAKEARGG----RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLL 111
R S + +T++K G + LRVGLICGGPSAERGISLNSARSVLDHIQGD +
Sbjct: 55 YRGSGAI---RTVSKAVGYGQEMSKSLRVGLICGGPSAERGISLNSARSVLDHIQGDGIN 111
Query: 112 VRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTI 171
V CYYID +L A+AISSAQVYSNTP+DFDFKLESLAQGF SLSE AEHL + VDIVFP I
Sbjct: 112 VSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGFSSLSELAEHLVSAVDIVFPVI 171
Query: 172 HGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231
HGRFGEDGGIQE+LE +N+PFVGTGSR C +AFDKY+ASLE+ + GF+TVP++L+QG+ V
Sbjct: 172 HGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLVQGTGV 231
Query: 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV DS+KKA +ILEGIDDRVV
Sbjct: 232 DKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGIDDRVV 291
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G D +E +AIF+YRRKYLPT
Sbjct: 292 VEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGIGDPKE-NAIFDYRRKYLPT 350
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
QQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW+L ++++ S G T
Sbjct: 351 QQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGT 410
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH 471
+ G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRTI+ ACSRFP+L YN S
Sbjct: 411 KSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIVHRACSRFPHLDWYNYGYSQ 470
Query: 472 LPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDI 525
L S+ L E ++VFVIFGGDTSERQVS+MSGTNVW+NLQ + D+
Sbjct: 471 LLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSGTNVWVNLQRYVDV 518
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/392 (22%), Positives = 145/392 (36%), Gaps = 83/392 (21%)
Query: 564 VLRHTTEEVLAACIEAIEPDRAAF---TSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 620
VL H + + I+PD AF ++ + + +D K S GF EL
Sbjct: 101 VLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF--DFKLESLAQGFSSLSELA- 157
Query: 621 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
E + A + VF +HG GEDG +Q LLE+ +P+ G G DK
Sbjct: 158 -----EHLVSAVD---IVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEA 209
Query: 681 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
SL L +LG +T+ + + + K+ I + + L+ + VKPA+ G S GV
Sbjct: 210 SL---ELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVK 266
Query: 741 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800
D +K E +L G+ + ++ E F+E D F++
Sbjct: 267 VAFGVND---SIKKATELILE----------GI-------DDRVVVEVFIE-DAYEFTA- 304
Query: 801 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPS---VTVKESGD-----ILSLEEK 852
+ + VG C + LMP+ + GD I K
Sbjct: 305 -----------------IVLDVGSGSVCHPV-VLMPTEVQLQFHGIGDPKENAIFDYRRK 346
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-------- 904
+ + PP + ++ LI L L F+RID + N
Sbjct: 347 YLPTQQVTYHTPPR--FPIHVIKSIREEASLIFQKLGLRDFARIDGWYLAPNSNLSSPVS 404
Query: 905 --------GEVLIIEVNTVPGMTPSTVLIHQA 928
G+++ ++N + GM ++ L QA
Sbjct: 405 ETLGGTKSGDIIFTDINLISGMEQTSFLFQQA 436
>gi|21536607|gb|AAM60939.1| unknown [Arabidopsis thaliana]
Length = 516
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 329/501 (65%), Positives = 388/501 (77%), Gaps = 20/501 (3%)
Query: 29 LSRNRKLKLKKSACRYATKTTSLGVEGARASAEVLEDQTMAKEARGG----RVLRVGLIC 84
L N+K L +S C LG+ R S + +T++K G + LRVGLIC
Sbjct: 31 LKLNQKNSLSESTCML------LGMNKYRGSGAI---RTVSKAVGYGQEMSKSLRVGLIC 81
Query: 85 GGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLE 144
GGPSAERGISLNSARSVLDHIQ D + V CYYID +L A+AISSAQVYSNTP+DFDFKLE
Sbjct: 82 GGPSAERGISLNSARSVLDHIQCDGINVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLE 141
Query: 145 SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAF 204
SLAQGF SLSE AEHL + VDIVF IHGRFGEDGGIQE+LE +N+PFVGTGSR C +AF
Sbjct: 142 SLAQGFSSLSELAEHLVSAVDIVFXVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAF 201
Query: 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIG 264
DKY+ASLE+ + GF+TVP++L+QG+ V++SE++ WF N+LD GKVVVKP +AGSSIG
Sbjct: 202 DKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIG 261
Query: 265 VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTE 324
V VA+GV DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTE
Sbjct: 262 VKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTE 321
Query: 325 VELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLC 384
V+LQF G D +E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+FQ+LGL
Sbjct: 322 VQLQFHGIGDPKE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLR 380
Query: 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444
DFARIDGW+L ++++ S G T+ G I+FTDINLISGMEQTSFLFQQASKVGFSH
Sbjct: 381 DFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSH 440
Query: 445 SNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504
SNILRTI+ ACSRFP+L YN S L S+ L E ++VFVIFGGDTSE
Sbjct: 441 SNILRTIVHRACSRFPHLDWYNYGYSQLLQGST------TLEVSEDPQKVFVIFGGDTSE 494
Query: 505 RQVSLMSGTNVWLNLQAFNDI 525
RQVS+MSGTNVW+NLQ + D+
Sbjct: 495 RQVSVMSGTNVWVNLQRYVDV 515
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 118/315 (37%), Gaps = 69/315 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDG +Q LLE+ +P+ G G DK SL L +LG +T+
Sbjct: 164 VFXVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASL---ELKELGFMTVPN 220
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ + + K+ I + + L+ + VKPA+ G S GV D +K E
Sbjct: 221 YLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVND---SIKKATE 277
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+L G+ + ++ E F+E D F++
Sbjct: 278 LILE----------GI-------DDRVVVEVFIE-DAYEFTA------------------ 301
Query: 818 VEITVGVIGKCGSMHSLMPS---VTVKESGD-----ILSLEEKFQGGTGINLTPPPASIM 869
+ + VG C + LMP+ + GD I K+ + PP
Sbjct: 302 IVLDVGSGSVCHPV-VLMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPR--F 358
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDN----------------GEVLIIEVN 913
+ ++ LI L L F+RID + N G+++ ++N
Sbjct: 359 PIHVIKSIREEASLIFQKLGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDIN 418
Query: 914 TVPGMTPSTVLIHQA 928
+ GM ++ L QA
Sbjct: 419 LISGMEQTSFLFQQA 433
>gi|303273608|ref|XP_003056164.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462248|gb|EEH59540.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 918
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 383/927 (41%), Positives = 518/927 (55%), Gaps = 92/927 (9%)
Query: 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP 136
++RV ++CGGPSAERG+SLNSARS+LD++ G V CYYID+ L A+ I++ Q+Y NTP
Sbjct: 29 LVRVAVLCGGPSAERGVSLNSARSILDNLHGSGFTVDCYYIDQGLRAFPINARQIYCNTP 88
Query: 137 ADFDFKLE-SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+DFDFKL +G A L A I FP +HG FGEDG +Q LE+ VPFVGT
Sbjct: 89 SDFDFKLRGKRREGIRDPVALASRLRAQGAIAFPALHGAFGEDGVLQNALEEAGVPFVGT 148
Query: 196 GS-RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE--SELSNWFVTNKLDPNSGKV 252
+ ACR AFDK+ S ++ +GF T+ LL+ S + + L WF T LDP V
Sbjct: 149 DAMHACR-AFDKFTCSRTLAAEGFPTLSMTLLEPSSNMDYHATLLRWFATCNLDPEFDYV 207
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
VVKP R GSSIGV++A GV+ + A + G D RVVVE + G EFT VL G
Sbjct: 208 VVKPARGGSSIGVSIARGVVQASDLASKLFTSGTDSRVVVERYAGSGVEFTITVL----G 263
Query: 313 FDCHPVVLLPTEVEL-----------QFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
PV L+PTE+E+ + G E+ F++RRKYLPT V YHTP R
Sbjct: 264 TTNEPVPLIPTEIEILADVEKGLKTSRKVGPAARLEQFNFFDFRRKYLPTMHVVYHTPAR 323
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHV--FSSSETKYGSTEW----GT 415
F I+ IR A+ +F+ LGL D+AR+DG+F+P+ + E G +E G
Sbjct: 324 FGTGAIDKIRRNAASIFKLLGLRDYARLDGFFMPNGDVAVQWCKEELVLGDSESLTTDGV 383
Query: 416 ILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGR 475
+FTD+N++ GMEQ+SFLFQQA+++G +HS +LR ++ AC R S++P R
Sbjct: 384 PVFTDVNVVCGMEQSSFLFQQAAEIGMTHSAVLRHVLCSACHR-----------SNIPIR 432
Query: 476 SSGSKPTEALN------------KREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFN 523
S+ N K E +V+V+FGG TSERQVSLMSGTNVWL L+ +
Sbjct: 433 MQISEKERKSNAETLTFYQQPQLKTENRVKVYVLFGGGTSERQVSLMSGTNVWLRLREYP 492
Query: 524 DIEVTPCLL-ASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEP 582
+ +V P LL + I C +D VW LPY+ VLRHT EEVLA P
Sbjct: 493 EYDVEPLLLEPTPIGCQ--LDKTY---------VWHLPYAAVLRHTVEEVLAVAKRTQNP 541
Query: 583 DRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADE-----LPMRHSINEWIKLAKENQAT 637
A ++ L+ + W D+ D +R +I+E+ A +A
Sbjct: 542 TPGA--------CARAIILLLRTYGWLD--DVEDSGTGITTAVRETISEFAATAAAEKAI 591
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F AVHGG GEDGTLQ+L YTG G +S+ C DK AT L L+ G+L+ N+
Sbjct: 592 IFNAVHGGCGEDGTLQALFTEARASYTGSGPASSRLCFDKAATGGELKPLSYFGILSYNR 651
Query: 698 ---DVRRKEDLL-KTPIV-DIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTV 750
R E L +T IV IW + + LC+KP DGCSTGVARL ++DL
Sbjct: 652 LLVSSRVLEVFLGQTSIVATIWDAFVATVGPAPFGLCIKPNSDGCSTGVARLKGSDDLLA 711
Query: 751 YVKALEECLLRIPPNSFSRAHGM---IEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
Y A+ + P A G+ IE+P P + EPF+ T + + +
Sbjct: 712 YATAIFNHQSHLHPGDLPMASGIAHIIELPEEIPSNFLVEPFIPTATVCITR--CRSGIE 769
Query: 808 RLMWK----GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 863
L ++ +RW+E+TVGV+G G +L PS+T+ GD+LSLEEKFQ GTG+N+TP
Sbjct: 770 ELYFEDVAFSTTRWIEVTVGVVGTKGHTAALHPSLTIVGHGDVLSLEEKFQAGTGVNITP 829
Query: 864 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
PA+I S E L + RI ANAL +EGF+RID F++VD G+V+I+E NTVPG+TPSTV
Sbjct: 830 LPATIASAEVLSAARTRIAFAANALDIEGFARIDLFLHVDTGDVMIVEANTVPGLTPSTV 889
Query: 924 LIHQALSEQPPMYPHQFFRKVLDLGSE 950
L HQAL+ P P F + + L +
Sbjct: 890 LFHQALATNPRANPAAFLKHAIKLAHK 916
>gi|406969232|gb|EKD93924.1| hypothetical protein ACD_28C00026G0002 [uncultured bacterium]
Length = 793
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 370/882 (41%), Positives = 507/882 (57%), Gaps = 107/882 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ L+V LICGGPS ERGISLNSARSVLDH+ G D+ + Y D Y IS +Q+YSNT
Sbjct: 2 KKLKVALICGGPSLERGISLNSARSVLDHLAGPDIEIVPIYFDHKKRPYHISKSQLYSNT 61
Query: 136 PADFDFKLESLAQGFGSLSEFA-EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
P+DFDFKL+S A+ LS+ A + L +VD+ FP +HG+FGEDGGIQ +LE Y VP+VG
Sbjct: 62 PSDFDFKLQSTAR---FLSQTALKMLLKSVDLAFPVMHGQFGEDGGIQRLLESYKVPYVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE-LSNWFVTNKLDPNSGKVV 253
+G AC++ DK+DA+ + +QGF +PS +L+ + + + ++F NK+ + +
Sbjct: 119 SGVEACKRCSDKFDANTFIREQGFFALPSQVLKIFHNDHGKRIRDFFKINKIK----RAI 174
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP GSSI V ++L+KA+ I ID RVV+E F EG EFT I+L G
Sbjct: 175 VKPATGGSSISVFSVGSPEEALEKAQLIFSRRIDTRVVIEPFCEG-VEFTVILLQNRFGM 233
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
PV +LPTE+E+ +Q IF++R+KYLPT+QV YH PPRF I I+
Sbjct: 234 ---PVAVLPTEMEMDYQNH-------QIFDFRKKYLPTRQVTYHCPPRFDNETIERIQVQ 283
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
LF LG+ DFAR DGW LP G + F+D N ISGMEQ SFL
Sbjct: 284 VEQLFTVLGMRDFARFDGWLLPD-----------------GKLWFSDFNPISGMEQNSFL 326
Query: 434 FQQASKVGFSHSNILRTIIGHACSR----FPNLASYNSVSSHLPGRSSGSKPTEALNKRE 489
FQQ++++G SH ++LR I+ +AC R FP+ S
Sbjct: 327 FQQSARIGLSHRDVLRLIVKNACRRQGIPFPDFISKQKQKKKR----------------- 369
Query: 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDP 549
+ V V+FGG+TSERQVSLMSGTNVWL L+ + P LL D N
Sbjct: 370 --KPVNVLFGGNTSERQVSLMSGTNVWLKLRQSETYDPKPFLL----------DLNGE-- 415
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIE-PDRAAFTSHLRNQVVNDLVEGLKKHSW 608
VWS+PY+L L HT EE+ C+ A E +R F L E +K
Sbjct: 416 ------VWSVPYALTLNHTVEEIYENCLRAKEDENRLRF-----------LEEKVKLRLA 458
Query: 609 FTGFDIADE--LPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGP 666
+ +++ LP R ++ +++ ++ VF +HGGIGEDGTLQ ++ V + GP
Sbjct: 459 LESEESSEDFVLPERMTLEQFLNRSE----FVFTGLHGGIGEDGTLQRMMVDANVKFNGP 514
Query: 667 GVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLK---TPIVDIWHELTSKLQC 723
G AS CMDK AT+ AL L GV N+ +L+ +W EL +LQ
Sbjct: 515 GEKASALCMDKYATNQALKGLEAQGVYVPNQRCIELSELVSLKGKAFEKVWKELQGELQA 574
Query: 724 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 783
+++ VKP DGCS+GV RL DL YV ++ IP F MIEMP E
Sbjct: 575 RSVIVKPQSDGCSSGVVRLYSIADLKQYVNWADKVAPFIPAGVFKNQVSMIEMPLTRMEN 634
Query: 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES 843
L+FEPF+ETD + ++L W+ W+E+TVGV+ + G M +L PS+TV E
Sbjct: 635 LLFEPFIETDVV-------RVKGNQLKWRKKKGWIEVTVGVVERKGKMVALSPSLTVAE- 686
Query: 844 GDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD 903
G++LSLEEKFQGGTGIN+TPP +I+ ++AL++ K IE++A L L G+SRID F++V+
Sbjct: 687 GEVLSLEEKFQGGTGINITPPSEAIVKSKALERAKHGIEVVAKHLGLNGYSRIDTFMHVE 746
Query: 904 NGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVL 945
G++LIIEVNT PG+TPSTV HQ L+E P+YP + +++
Sbjct: 747 TGDLLIIEVNTTPGLTPSTVFFHQGLAEPTPIYPRELLEELV 788
>gi|6403498|gb|AAF07838.1|AC010871_14 unknown protein [Arabidopsis thaliana]
Length = 515
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 329/550 (59%), Positives = 389/550 (70%), Gaps = 61/550 (11%)
Query: 1 MTSLAFSSSFSFLRNDAVGG-----ITFRSPKVLSRNRKLKLKKSACRYATKTTSLGVEG 55
M S+A SFS GG + + L N+K L +S C LG+
Sbjct: 1 MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCML------LGMNK 54
Query: 56 ARASAEVLEDQTMAKEARGG----RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLL 111
R S + +T++K G + LRVGLICGGPSAERGISLNSARSVLDHIQGD +
Sbjct: 55 YRGSGAI---RTVSKAVGYGQEMSKSLRVGLICGGPSAERGISLNSARSVLDHIQGDGIN 111
Query: 112 VRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTI 171
V CYYID +L A+AISSAQVYSNTP+DFDFKLESLAQGF SLSE AEHL + VDIVFP I
Sbjct: 112 VSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGFSSLSELAEHLVSAVDIVFPVI 171
Query: 172 HGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231
HGRFGEDGGIQE+LE +N+PFVGTGSR C +AFDKY+ASLE+ + GF+TVP++L+QG+ V
Sbjct: 172 HGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASLELKELGFMTVPNYLVQGTGV 231
Query: 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV DS+KKA +ILEGIDDRVV
Sbjct: 232 DKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVNDSIKKATELILEGIDDRVV 291
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G D +E +AIF+YRRKYLPT
Sbjct: 292 VEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGIGDPKE-NAIFDYRRKYLPT 350
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
QQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW+L ++++ S
Sbjct: 351 QQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGWYLAPNSNLSSP-------- 402
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASK----------------VGFSHSNILRTIIGHA 455
ISGMEQTSFLFQQASK VGFSHSNILRTI+ A
Sbjct: 403 ------------ISGMEQTSFLFQQASKVIKDIVTLMIIDSYIQVGFSHSNILRTIVHRA 450
Query: 456 CSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNV 515
CSRFP+L YN S L S+ L E ++VFVIFGGDTSERQVS+MSGTNV
Sbjct: 451 CSRFPHLDWYNYGYSQLLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSGTNV 504
Query: 516 WLNLQAFNDI 525
W+NLQ + D+
Sbjct: 505 WVNLQRYVDV 514
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 564 VLRHTTEEVLAACIEAIEPDRAAF---TSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 620
VL H + + I+PD AF ++ + + +D K S GF EL
Sbjct: 101 VLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF--DFKLESLAQGFSSLSELA- 157
Query: 621 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
E + A + VF +HG GEDG +Q LLE+ +P+ G G DK
Sbjct: 158 -----EHLVSAVD---IVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEA 209
Query: 681 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 739
SL L +LG +T+ + + + K+ I + + L+ + VKPA+ G S GV
Sbjct: 210 SL---ELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGV 265
>gi|46446032|ref|YP_007397.1| D-alanine--D-alanine ligase [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399673|emb|CAF23122.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia
amoebophila UWE25]
Length = 798
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 340/867 (39%), Positives = 477/867 (55%), Gaps = 98/867 (11%)
Query: 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP 136
+ ++ LICGGPS ERGISLNSARSVLDH+ + + + Y+D Y IS+AQ+YSNTP
Sbjct: 1 MFKIALICGGPSLERGISLNSARSVLDHLASEFIEIIPIYVDYQNFFYLISTAQLYSNTP 60
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
ADFDFKL+ AQ EF + L N+D+VFP IHG FGEDG +Q++LE+ +VPFVGTG
Sbjct: 61 ADFDFKLKKSAQAMNR-EEFKKILR-NIDLVFPVIHGIFGEDGELQKILEEIDVPFVGTG 118
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNE-SELSNWFVTNKLDPNSGKVV 253
S+AC + F KY AS + + F P+F L E N+ + + ++F ++L + +
Sbjct: 119 SQACAEMFCKYHASQILHQNRF---PAFMKLEVCPETNDLAPIKSFFEQHQLK----RAI 171
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKPT GSSIGVT D+ +K K + +GI R ++E F EG +EFT +VL
Sbjct: 172 VKPTMGGSSIGVTSVQTPEDAFEKIKMLCQQGIAKRALIEPFCEG-TEFTVVVLQNQQS- 229
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
PV L+PTE+E+ +Q IF+YR+KYLPT Q YHTP RF +I IR+
Sbjct: 230 --KPVALIPTEIEMSYQNH-------QIFDYRKKYLPTNQTTYHTPARFDETIIQGIRQK 280
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A +F + DFAR+DGW L GTI FTD+N ISGMEQ SFL
Sbjct: 281 AEAIFTLFHMRDFARLDGWLLND-----------------GTIYFTDLNPISGMEQNSFL 323
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIRE 493
F+QAS +G +H ++ R II AC R+ LA V + + ++
Sbjct: 324 FRQASLLGLTHRDVFRLIITSACLRW-KLAPPTFVDESMLEK----------------KK 366
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V V+FGG +ERQVSLMSGTNVWL L + P +
Sbjct: 367 VHVLFGGKNAERQVSLMSGTNVWLKLLRSSKYHPIPFFYGKN------------------ 408
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
++W LPY+ L HT EE+L C+ R A L N N + E L F
Sbjct: 409 DLIWQLPYAYTLDHTVEEILHRCLA-----REASNKKLPN-YFNSICEQLGIPYNF---- 458
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
E P + ++ +L+ NQA VFIA+HGG GE+G LQ LE + Y G S
Sbjct: 459 --QETPSSMCLQDFYQLSASNQAFVFIAMHGGEGENGILQKELEKNQLYYNGSCAKTSSI 516
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQCKTLCVKP 730
CMDK T + L + ++ K+ +L ++ W+++ L+ L +KP
Sbjct: 517 CMDKFLTGQVIEQLKHPNIFSLPKECVEAANLFGQSTKYFLEKWNKICISLRSNRLIIKP 576
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790
+DGCS G+ L DL Y ++ + IP SFS+ +IEMP+ + EP++
Sbjct: 577 RQDGCSAGIVLLESGADLEKYFAFIQNNVSLIPKGSFSQQKDVIEMPSSTCVEYLLEPYI 636
Query: 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 850
ETD I+ + L+ + WVE+TVGV+ SL PS+T+ E G +LSLE
Sbjct: 637 ETDRIIL-------DQGELIHEIKEGWVELTVGVLEHNQIYRSLNPSITLAE-GAVLSLE 688
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
EKFQGGTG+NLTPPP I+++E + + K IE A+ALQ++ ++R+D F + + ++++I
Sbjct: 689 EKFQGGTGVNLTPPPEKILASEDVSQIKFLIEKTADALQIQNYARLDIFYHRETKKMVVI 748
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYP 937
E NT+PG+TPSTV Q L+E+ P+ P
Sbjct: 749 EANTLPGLTPSTVFYQQGLAEKKPLNP 775
>gi|6403499|gb|AAF07839.1|AC010871_15 hypothetical protein [Arabidopsis thaliana]
Length = 269
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/260 (70%), Positives = 213/260 (81%), Gaps = 4/260 (1%)
Query: 596 VNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSL 655
+ DL++G K SWF GFDI DELP ++S+ EWIK AKE QATVFIAVHGGIGEDGTLQ L
Sbjct: 1 MEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGL 60
Query: 656 LEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWH 715
LE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+ TI+KDV+R ED++ ++W
Sbjct: 61 LEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIMHETFPNVWD 120
Query: 716 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIE 775
EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV+AL++C+ RIPPN+ S+ HGMIE
Sbjct: 121 ELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNTLSKTHGMIE 180
Query: 776 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835
MPNP PE LIFEPFVETDEI+ SS K +L WKG RWVE+TVGVIGK GSMHSL
Sbjct: 181 MPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWKGRRRWVEMTVGVIGKRGSMHSLS 236
Query: 836 PSVTVKESGDILSLEEKFQG 855
PS+TVKESGDILSLEEKFQG
Sbjct: 237 PSLTVKESGDILSLEEKFQG 256
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 141 FKLESLAQGFG---------SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
FK +S GF SL E+ +H VF +HG GEDG +Q +LE V
Sbjct: 8 FKNQSWFAGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVS 67
Query: 192 FVGTGSRACRQAFDKY---DASLEMSKQGFITVPSFLLQGSEVNESELSNWF--VTNKLD 246
+ G G A R DK A +S+ G T+ + + ++ N + + KL
Sbjct: 68 YTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIMHETFPNVWDELIKKL- 126
Query: 247 PNSGKVVVKPTRAGSSIGV 265
+ VKP + G S GV
Sbjct: 127 -QCLTLCVKPAKDGCSTGV 144
>gi|147832389|emb|CAN77783.1| hypothetical protein VITISV_037213 [Vitis vinifera]
Length = 235
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/225 (77%), Positives = 193/225 (85%)
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
D + +W+LPYSLVLRHTTEEVLAACIEAIEPDRAA TS LRNQV+NDL+EGLKK WF
Sbjct: 7 DVRMKTIWTLPYSLVLRHTTEEVLAACIEAIEPDRAALTSELRNQVMNDLMEGLKKQXWF 66
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
TGFD+ADE P+R+S+ +W+KLAKE QATVFIAVHGG+GEDGTLQ LLEA GVPYTGPGV
Sbjct: 67 TGFDLADEPPVRYSVEQWVKLAKEVQATVFIAVHGGMGEDGTLQFLLEAGGVPYTGPGVE 126
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
SK CMDKVATSLALNHL GVLTINK V RKEDLL P+ DIWH+LTSKLQ +TLCVK
Sbjct: 127 TSKICMDKVATSLALNHLEKFGVLTINKKVLRKEDLLNAPVHDIWHDLTSKLQSETLCVK 186
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMI 774
PARDGCSTGVARLCC EDL VYVKALEEC LRIP NS S+ + +I
Sbjct: 187 PARDGCSTGVARLCCLEDLAVYVKALEECFLRIPSNSLSKVYKLI 231
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 167 VFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASL---EMSKQGFITVPS 223
VF +HG GEDG +Q +LE VP+ G G + DK SL + K G +T+
Sbjct: 95 VFIAVHGGMGEDGTLQFLLEAGGVPYTGPGVETSKICMDKVATSLALNHLEKFGVLTINK 154
Query: 224 FLLQGSEVNESELSN-WF-VTNKLDPNSGKVVVKPTRAGSSIGV 265
+L+ ++ + + + W +T+KL S + VKP R G S GV
Sbjct: 155 KVLRKEDLLNAPVHDIWHDLTSKL--QSETLCVKPARDGCSTGV 196
>gi|147828391|emb|CAN70986.1| hypothetical protein VITISV_039270 [Vitis vinifera]
Length = 222
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/210 (81%), Positives = 192/210 (91%)
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
C EDL VYVKALEEC LRIP NS S+AHG+IEMP+PPPE+LIFEPF+ETDEI+ SS + N
Sbjct: 13 CLEDLAVYVKALEECFLRIPSNSLSKAHGVIEMPSPPPELLIFEPFIETDEIIVSSNAVN 72
Query: 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 863
A+RL+W+G+SRWVE+TVGV+GK GSMHSL PSVTVKESGDILSLEEKFQGGTGINLTP
Sbjct: 73 DXANRLIWEGHSRWVEVTVGVVGKRGSMHSLTPSVTVKESGDILSLEEKFQGGTGINLTP 132
Query: 864 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
PP SI+S AL+ CKQRIELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPSTV
Sbjct: 133 PPLSIISKAALESCKQRIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTV 192
Query: 924 LIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
LIHQAL+E+PPMYPH+FFR +LDLGSERF+
Sbjct: 193 LIHQALAEEPPMYPHRFFRTLLDLGSERFI 222
>gi|76880178|dbj|BAE45861.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
Length = 417
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/318 (55%), Positives = 227/318 (71%), Gaps = 2/318 (0%)
Query: 61 EVLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN 120
E ED+ E R G LRV L+CGGPS ERGISLNSARSVLDH++G D+ V CYY+++
Sbjct: 95 EKEEDRLKGDENRSG-TLRVALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQK 153
Query: 121 LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
L + I SA +YSNTP DFDFK+ S A+ F S +EF EHL A DIVFP +HGRFGEDGG
Sbjct: 154 LEPFGIPSALMYSNTPEDFDFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGG 213
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE +P++GTG+ A + AFDKYDA+ EM+ GF T+P FL++ +V+ + L WF
Sbjct: 214 IQALLESAGLPYIGTGAAAAQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWF 273
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
N ++ NSG+VVVKP R+GSS+GV+VA G+ +++ A+ + +G +DRVV+E+F EG
Sbjct: 274 EDNNINANSGRVVVKPARSGSSVGVSVAEGLDTAVQHAEALFNKGGNDRVVIEMFAEGAL 333
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQ-FQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
EFTA+VLDVG G + PV L PTEVEL D + AIFNYRRKYLPT+QV+YHTP
Sbjct: 334 EFTALVLDVGFGNETRPVALFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTP 393
Query: 360 PRFPIVVINSIREGASLL 377
PRF IN IR A+ +
Sbjct: 394 PRFSEETINKIRNRAAFI 411
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 22/153 (14%)
Query: 612 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
F IA S E+++ + VF A+HG GEDG +Q+LLE+ G+PY G G A+
Sbjct: 174 FKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAAA 233
Query: 672 KTCMDK--VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI-----WHELTS-KLQC 723
+ DK A +A + A L + L++ VDI W E +
Sbjct: 234 QVAFDKYDAAAEMAWHGFATLPIF-----------LVENGKVDINRLRGWFEDNNINANS 282
Query: 724 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ VKPAR G S GV+ AE L V+ E
Sbjct: 283 GRVVVKPARSGSSVGVS---VAEGLDTAVQHAE 312
>gi|242047032|ref|XP_002461262.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
gi|241924639|gb|EER97783.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
Length = 603
Score = 352 bits (903), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 189/365 (51%), Positives = 232/365 (63%), Gaps = 50/365 (13%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
GR LRVGLIC GPS ERG+SLNSARSVLDHIQG+DL+VRCYYID + A+A S Q+YSN
Sbjct: 7 GRPLRVGLICCGPSGERGVSLNSARSVLDHIQGEDLVVRCYYIDSAMKAFATSPVQLYSN 66
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
TP+DFDFKLESLAQGF SLS+FAEHLA NVDIVFP IHG+FGEDGGIQE+LEK NVPFVG
Sbjct: 67 TPSDFDFKLESLAQGFDSLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVG 126
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV- 253
T S+ C++AFDK D ++ + EL WF T L+ +GKV+
Sbjct: 127 TPSKECQRAFDKKD---------------------KLAKPELEAWFKTVNLNKENGKVIG 165
Query: 254 -------------VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
VKPTRAGSSIG+ VAYGV D+ +KA+ II EGIDD+V++E+FLEG
Sbjct: 166 WIGEGVTSDVLEQVKPTRAGSSIGMVVAYGVNDAAQKAEEIISEGIDDKVIIEVFLEGAL 225
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
FT IV+DVG+ + PVVLLP EVELQ+ S D KD IFNYR+KYLP++Q++
Sbjct: 226 SFTTIVVDVGTANNSEPVVLLPKEVELQYSNSSDTN-KDTIFNYRKKYLPSRQISGMEQT 284
Query: 361 RF-------PIVVINSIREGASLLFQRLGLCDFAR-------IDGWFLPSSTHVFSSSET 406
F + + R + G CD R + L + FSS +
Sbjct: 285 SFLFQQASTKTTTVETNRSNPQRYIKTEGFCDLQRGHFRALDVTPCLLAPANGYFSSHDE 344
Query: 407 KYGST 411
+ T
Sbjct: 345 DFSDT 349
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/244 (61%), Positives = 185/244 (75%), Gaps = 1/244 (0%)
Query: 618 LPMRHSINEWIKLAKEN-QATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 676
L +RH+ E E + V VHGGIGEDGT+Q+LLE+ GVP+TGPG + S+TC+D
Sbjct: 360 LVLRHTTEEVHAACVEVFMSCVLYVVHGGIGEDGTIQTLLESAGVPFTGPGPIVSRTCID 419
Query: 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 736
KVA+SLA++HL GV TI KDVR E++LK+ +VDIW+EL +KL+ +T+CVKPARDGCS
Sbjct: 420 KVASSLAVDHLVSYGVRTIPKDVRATEEVLKSSLVDIWNELKAKLRTETVCVKPARDGCS 479
Query: 737 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 796
TGV RLCC +DL VY AL +P N SRAHG+IEM PPPE LIFEPF+ETDEI+
Sbjct: 480 TGVERLCCPKDLEVYTNALRRKFQYLPANCLSRAHGVIEMRVPPPESLIFEPFIETDEII 539
Query: 797 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 856
S++ N A L+WKG + W+EIT GV+GK G MHSL PS+TVKESGDILSLEEKFQGG
Sbjct: 540 ISNKLGNDRARHLVWKGENDWLEITDGVVGKRGEMHSLNPSITVKESGDILSLEEKFQGG 599
Query: 857 TGIN 860
TGIN
Sbjct: 600 TGIN 603
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 465 YNSVSSHLPGRS-SGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQA-- 521
+N +LP R SG + T L ++ + V +R + T + +LQ
Sbjct: 266 FNYRKKYLPSRQISGMEQTSFLFQQASTKTTTVETNRSNPQRYIK----TEGFCDLQRGH 321
Query: 522 FNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIE 578
F ++VTPCLLA + S D + +D +SR VW+LPYSLVLRHTTEEV AAC+E
Sbjct: 322 FRALDVTPCLLAPANGYFSSHDEDFSD---TSREVWTLPYSLVLRHTTEEVHAACVE 375
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 167 VFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASL---EMSKQGFITVPS 223
V +HG GEDG IQ +LE VPF G G R DK +SL + G T+P
Sbjct: 381 VLYVVHGGIGEDGTIQTLLESAGVPFTGPGPIVSRTCIDKVASSLAVDHLVSYGVRTIPK 440
Query: 224 FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGV 265
+ EV +S L + + K + V VKP R G S GV
Sbjct: 441 DVRATEEVLKSSLVDIWNELKAKLRTETVCVKPARDGCSTGV 482
>gi|395214454|ref|ZP_10400603.1| D-alanine--D-alanine ligase A [Pontibacter sp. BAB1700]
gi|394456299|gb|EJF10617.1| D-alanine--D-alanine ligase A [Pontibacter sp. BAB1700]
Length = 908
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 264/983 (26%), Positives = 404/983 (41%), Gaps = 199/983 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG+I GGPS ER IS R+V D++ + D N + +Y T
Sbjct: 1 MRVGIIFGGPSREREISFAGGRTVYDNLDKALFEAVPVFADSLGNFILLDWQYIYKGTIR 60
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAA------------------------NVDIVFPTIHG 173
DF +E+L + L + E L + D F +HG
Sbjct: 61 DFYPPVEALPESEHGLQIYLESLGELSIEEQDRIIAKAGKRLLPHEFKNHFDFAFLALHG 120
Query: 174 RFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQ-GFITVPSFLLQGSEV- 231
+GEDG IQ +LE Y++P+ G+G DK A EM KQ GF T +Q +E
Sbjct: 121 PYGEDGSIQGLLEWYHIPYSGSGILPSSIGIDK-AAQKEMLKQHGFPTPDYRKVQYAEWK 179
Query: 232 ---NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA----YGVID----------- 273
N +L V + P +V+K GSSIGV++ Y + +
Sbjct: 180 DVNNRKQLFESLVADLGLP----LVLKAPHQGSSIGVSIVKEHNYELFEQGMDRSFFTKN 235
Query: 274 -------SLKKAKGI--------ILEGIDDRVVVE--LFLEGGSEFTAIVLDVGSGFDCH 316
+L + K + I EGI VV+E L E + + D
Sbjct: 236 IYKAQWQALGEEKQVASMKQLVDIREGIGMPVVLEEGTILYHPEELLNHINHTFATTDTE 295
Query: 317 PVVLLPTEVELQ--FQGSVDVREKDAI-----------------------FNYRRKYLP- 350
+VL E E Q + ++ RE I F+YR KYLP
Sbjct: 296 TIVLTSVEHEQQVLVEAFINGREFSCIVVQDETGAPIALPPTEIVKGSEVFDYRSKYLPG 355
Query: 351 -TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409
+++ TP P I IR+ S LF LG +AR+DG+
Sbjct: 356 LARKI---TPINLPSEQIQEIRKACSKLFVNLGFNVYARLDGFI---------------- 396
Query: 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVS 469
TE G I D N SGM +SF F QA+++G + S L II + +
Sbjct: 397 -TEEGNIFLNDPNTTSGMLPSSFFFHQAAEIGLNPSQFLTYIIRTSVAERLKSGKDTVTL 455
Query: 470 SHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTP 529
+ L + + E ++ + IR V VI GG +SER +S+ SG N++ L + E P
Sbjct: 456 TRLLSQLDNAIREENAHRHDKIR-VGVIMGGYSSERHISVESGRNIYEKLSSSTKYEPLP 514
Query: 530 CLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTS 589
L S + ++S+P +++L+ +++ E I+
Sbjct: 515 IFLTGS---------------NEEHRLYSIPINIMLKDNADDIK----EKIQHFEHGGKP 555
Query: 590 HLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649
H Q + E + + +TG + + P R + ++ + VFIA+HG GED
Sbjct: 556 HPVLQEIISEAESITRK--YTGKSLDE--PQRITYSQLQNMVD----AVFIALHGRPGED 607
Query: 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709
G LQ LE +PY G G+ +S+ ++K T+ LA GV + + KED LK
Sbjct: 608 GALQQELEKLAIPYNGSGISSSQITINKYDTN---EILAKHGVPVAHHRMAWKEDWLKDK 664
Query: 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSR 769
+ L ++ + KPA DGCS+ V ++ +L +
Sbjct: 665 EA-FYQSLENEFRY-PFIAKPADDGCSSAVKKIKNRAELDAFT----------------- 705
Query: 770 AHGMIEMPNPPPEILIFEPFVETD-------EILFSSQSTNKNA---DRLMWK-GNSRWV 818
LIF E D + F + NK + L+ K G ++
Sbjct: 706 -------------TLIFREMEELDTECARTLSLGFKEEFPNKQGFLVETLISKNGAKHFL 752
Query: 819 EITVGVIGKCGS----MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI---MST 871
EIT G++ + + + G++LSLEEKF G G N+TP +
Sbjct: 753 EITGGLLTTYAPDGTVAYEVFEASEALAEGEVLSLEEKFLAGEGQNITPARYAQDPERRQ 812
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNV---DNGEVLIIEVNTVPGMTPSTVLIHQA 928
+ DK K+ ++ +A L +EG++RIDAFV V D E +IIEVN++PGMTP+T + HQ
Sbjct: 813 KISDKVKEDLKRVAQILNIEGYARIDAFVRVLENDEVETIIIEVNSLPGMTPATCIFHQT 872
Query: 929 LSEQPPMYPHQFFRKVLDLGSER 951
P++F ++L G ER
Sbjct: 873 AING--YKPYEFIDRILTFGVER 893
>gi|406908076|gb|EKD48698.1| hypothetical protein ACD_64C00179G0003 [uncultured bacterium]
Length = 740
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 222/885 (25%), Positives = 377/885 (42%), Gaps = 186/885 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L+VG+ GG S E+ +S NS R++ DH+ + Y + Y + ++
Sbjct: 4 LKVGVFMGGKSIEKEVSFNSGRTICDHLDTARYTIIPIYQTSDGTLYLLPWHFLHRGKTT 63
Query: 138 DFDFKLESLAQ--GFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
DF+ +L S A+ + +LSE+ VD V+ +HGR+ EDG +Q LE +P++G+
Sbjct: 64 DFEHRLASQAERIAWDTLSEY-------VDFVYIAMHGRYAEDGILQGALELLGIPYLGS 116
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV--V 253
A DK + G T L+ E V +L + + V
Sbjct: 117 SRLASALCMDKTRVKTVLKSHGIATPQGITLEAHEALTITTIQQDVIAQLQKKNIALPWV 176
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKG--IILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
VKP GSSIGV++ + D + + +I V++E L G EF+ + L
Sbjct: 177 VKPQNEGSSIGVSIVWNEKDLVAAVQSACMIHPEYPQAVLIEERL-SGMEFSCVTLVDYK 235
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
P L+PTE+ V D +F+Y++KY+P + + + TPPR I +I+
Sbjct: 236 NNTLLP--LVPTEI-------VPDAGTD-LFDYKQKYMPGRAMKF-TPPRCSPETIAAIQ 284
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ + + L + +RIDG+ T+ GT++ D N SGM +S
Sbjct: 285 DTCMRIMRILDIQTISRIDGFV-----------------TQDGTVVIVDPNTFSGMAPSS 327
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGI 491
F+F++A+++ SH+ ++ +I R+ +++ L +K + N +
Sbjct: 328 FVFREAAELNMSHTALINHLIETDIHRY-------NITETL------TKQEQQQNSMKKK 374
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
V V+ GG + ER++SL SG N+ L ++TP + S
Sbjct: 375 LRVGVLLGGASHEREISLESGRNITYKLSP-ESYDITPLFV------------------S 415
Query: 552 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 611
+++L S ++R++T E+ A +++P++ L Q
Sbjct: 416 RDNTLYTLTQSQLVRNSTAEIAA----SLKPEQQIRWQSLPEQ----------------- 454
Query: 612 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
FD +F +HGG GE+G++Q +LE +PY G V AS
Sbjct: 455 FDF-----------------------IFNGLHGGAGENGSVQGMLELLDLPYNGSSVFAS 491
Query: 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHEL--TSKLQCKTLCVK 729
CMDK T+ L G N + K K I + HEL + VK
Sbjct: 492 ALCMDKYKTA---EFLRASGFSVPNHYLIHK----KAWIANQAHELEQIKHIGAGPYIVK 544
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
P+ DGCS V+ ++ +V A+ + + ++ E +
Sbjct: 545 PSDDGCSVMVSSARTQSEIIQHVNAIVDS---------------------GKQTVLIEEY 583
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 849
+ E +TVGV+G S +L PS + ++G +LS+
Sbjct: 584 LTGME-------------------------LTVGVLGN-ESPRALPPSQAIAQAG-VLSI 616
Query: 850 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN------VD 903
EEKF G G N TP P + + L ++ +E + A+ G++RID F
Sbjct: 617 EEKFLPGAGENQTPAP---LPSATLQLVQKTMENVFKAVGCRGYARIDCFYQTAQHSPTG 673
Query: 904 NGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948
+ V+I+E+NT+PG+TP+T + HQA + + P F ++++LG
Sbjct: 674 HERVVILEINTLPGLTPATCIFHQA--AEIGLRPMDFIDQIVELG 716
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 178/401 (44%), Gaps = 40/401 (9%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ LRVG++ GG S ER ISL S R++ + + + ++ R+ Y ++ +Q+ N+
Sbjct: 373 KKLRVGVLLGGASHEREISLESGRNITYKLSPESYDITPLFVSRDNTLYTLTQSQLVRNS 432
Query: 136 PADFDFKLESLAQ-GFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
A+ L+ Q + SL E D +F +HG GE+G +Q +LE ++P+ G
Sbjct: 433 TAEIAASLKPEQQIRWQSLPE-------QFDFIFNGLHGGAGENGSVQGMLELLDLPYNG 485
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
+ A DKY + + GF +VP+ L + + ++ K +G +V
Sbjct: 486 SSVFASALCMDKYKTAEFLRASGF-SVPNHYLIHKKAWIANQAHELEQIK-HIGAGPYIV 543
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+ G S+ V+ A + ++ I+ G V++E +L G + L VG +
Sbjct: 544 KPSDDGCSVMVSSARTQSEIIQHVNAIVDSG-KQTVLIEEYLTG------MELTVGVLGN 596
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
P L P++ Q + + K+LP TP P + +++
Sbjct: 597 ESPRALPPSQAIAQ----------AGVLSIEEKFLPGAG-ENQTPAPLPSATLQLVQKTM 645
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+F+ +G +ARID ++ ++ T ++ +IN + G+ + +F
Sbjct: 646 ENVFKAVGCRGYARIDCFY----------QTAQHSPTGHERVVILEINTLPGLTPATCIF 695
Query: 435 QQASKVGFSHSNILRTII--GHACSRFPNLASYNSVSSHLP 473
QA+++G + + I+ G A +A + +S+H P
Sbjct: 696 HQAAEIGLRPMDFIDQIVELGLAAHHADGIAPSHRISAHTP 736
>gi|313675049|ref|YP_004053045.1| d-alanine--d-alanine ligase [Marivirga tractuosa DSM 4126]
gi|312941747|gb|ADR20937.1| D-alanine--D-alanine ligase [Marivirga tractuosa DSM 4126]
Length = 894
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 251/998 (25%), Positives = 409/998 (40%), Gaps = 236/998 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+R+G+ GG S ER IS R+V D++ +ID + + +Y T
Sbjct: 1 MRIGIFFGGQSREREISFAGGRTVYDNLNKSIFDAVPIFIDSKGHFVLLDWQYIYKGTIR 60
Query: 138 DF----------DFKLESLAQGFGSLSE------FAE--------HLAANVDIVFPTIHG 173
DF D ++ A+ +LS+ AE ++D F +HG
Sbjct: 61 DFYPPVNFLPKSDLPVQIYAESLKNLSDEDWDKLIAEVGQKINPSDFKKHIDFAFLALHG 120
Query: 174 RFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233
+GEDG IQ +LE +PF G G K + + GF S +L ++ N
Sbjct: 121 PYGEDGNIQGILEWNGIPFSGAGILPSAIGISKIAQRQFLQQAGFEGPKSRILNQNDWNH 180
Query: 234 SELSNWF-------------------------VTNKLDPNSGKVVVKPT----------- 257
N + + N+ DPN + +V+ +
Sbjct: 181 QPHENIYQNLKKELGLPLVIKAPHQGSSIGVSILNEDDPNKFEKLVQKSFFELEITEDEW 240
Query: 258 ------------------RAGSSIGVTVAYGVI---DSL---------KKAKGIILEGID 287
R G + V G++ D L K + I L+ ID
Sbjct: 241 NGYSQEEKIGFIAKLVDIREGIGLPVIAEEGMLYTPDELLEFLNNTFTAKKQSIKLKAID 300
Query: 288 --DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYR 345
+ +++E F+EG EF+ IV+ + P+ L PTE+ R+ +F+YR
Sbjct: 301 SENSLLIESFIEG-KEFSCIVI---QDENERPIALPPTEI----------RKGKDVFDYR 346
Query: 346 RKYLP--TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSS 403
KYLP ++++ TP P +I IR + LF+ L + +ARIDG+
Sbjct: 347 SKYLPGISRKI---TPIDAPQDIIEKIRSQCAALFKALQIDVYARIDGFI---------- 393
Query: 404 SETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463
T+ G + D N SGM +SF F QA+++G + S L II + A
Sbjct: 394 -------TKEGKVFLNDPNTTSGMLPSSFFFHQAAEIGLNPSQFLSYIIRTSLQ-----A 441
Query: 464 SYNSVSSHLPGRSSGSKPTEALN--KREGIRE--VFVIFGGDTSERQVSLMSGTNVWLNL 519
+ H + + AL K+E ++ V VI GG ++ER +S+ SG N++ L
Sbjct: 442 RLKTGKHHFELQKMIKQLDAALEGLKKEAQKKINVGVIMGGFSTERHISVESGRNIYEKL 501
Query: 520 QAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV------- 572
+ P L+ + D ++ LP +++L+ +++
Sbjct: 502 SSSEKYLPIPIFLSGNEDQHE---------------LYVLPINIMLKDNADDIKDKIQNY 546
Query: 573 -LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA 631
+ I I+ + + T + ++V LKK S+ DI D
Sbjct: 547 EVHPIISQIKFESSEITEKYVG--IENIV--LKKISYHDLPDIID--------------- 587
Query: 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----L 687
FIA+HG GEDG +Q+ LE +PY G V +SK ++K T+ L + +
Sbjct: 588 -----VTFIALHGRPGEDGAVQAELEKLNIPYNGSDVESSKITINKYDTNEILKNAGISV 642
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
AD ++ NK KE I I +L+ L KPA DGCS+ V ++ +
Sbjct: 643 ADHRLVFENKWQSNKE----AEIAAIEEQLSY-----PLIAKPADDGCSSAVKKIKNKAE 693
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN-- 805
L + GM M P E + E ++ + + KN
Sbjct: 694 LEAFA-------------------GM--MFRPQAEFI--EDLANILKLKKNEEFPQKNFF 730
Query: 806 -ADRLMWKGNSRW-VEITVGVI---GKCGSM-HSLMPSVTVKESGDILSLEEKFQGGTGI 859
+ L+ K ++++ +EIT G++ + GS+ + + G++LSLEEKF G G
Sbjct: 731 LLEELIEKKDAKYFLEITGGLLTHFKEDGSIEYEIFEPSEALAGGEVLSLEEKFLAGEGQ 790
Query: 860 NLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG---EVLIIEVN 913
N+TP P + ++ K ++ A L + G++RIDAFV V E +IIEVN
Sbjct: 791 NITPARYTPQAENYKVVAEQVKATLKKTAEVLNITGYARIDAFVRVYEDLSVETIIIEVN 850
Query: 914 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
++PGMTP+T + HQ P+ F K+L G+E+
Sbjct: 851 SLPGMTPATCIFHQTAING--YKPYDFIDKILAFGTEK 886
>gi|110637336|ref|YP_677543.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
gi|110280017|gb|ABG58203.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
Length = 897
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 188/702 (26%), Positives = 312/702 (44%), Gaps = 125/702 (17%)
Query: 274 SLKKAKGIILEGIDDRVVVEL--FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQG 331
SL + ++LE +D+ + + F++G EF+ IV+ G +P+ L PT +
Sbjct: 289 SLSSKERVLLESLDNEEEIIIESFIKG-QEFSCIVIQDEDG---NPIALPPTGI------ 338
Query: 332 SVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391
V+ D F+YR KYLP TP P + IR L+ L +ARIDG
Sbjct: 339 ---VKGND-FFDYRSKYLPGMSRKI-TPIDIPGEQVELIRSECCRLYSTLQFNVYARIDG 393
Query: 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451
+ P G + D N SGM +SF F QA+++G + S L I
Sbjct: 394 FISPE-----------------GEVFLNDPNTTSGMMPSSFFFHQAAEIGLNPSQFLTYI 436
Query: 452 IGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMS 511
I + + L + +E + +E I+ + V+ GG +SER +S+ S
Sbjct: 437 IRTSIQERIKDGKRSLRYKQLLATLDQAISSEKNSSKEKIK-IAVVMGGYSSERHISVES 495
Query: 512 GTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 571
G N++ L + + P L S D R+ + LP +++L+ ++
Sbjct: 496 GRNIFEKLSSSTKYQPLPVFLTGS--------------DEQHRL-FILPINILLKDNADD 540
Query: 572 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKH-----SWFTGFDIADELPMRHSINE 626
+ I F H + ++E + K S + I D P S E
Sbjct: 541 IREKVIN--------FKGH------HPIIEHIAKETESISSRYVSNAIKD--PKEISYKE 584
Query: 627 WIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 686
+L VFIA+HG GEDG++Q LE +PY G G+ +S+ ++K T+ L
Sbjct: 585 LSELVD----GVFIALHGRPGEDGSMQKELEKYQLPYNGSGIQSSQITINKFETNRILR- 639
Query: 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC---KTLCVKPARDGCSTGVARLC 743
+ G+ N + K++ L D +L S+++ + KP+ DGCS+ V ++
Sbjct: 640 --EHGISVANHRMVYKQEWL-----DAGEKLLSEIESGFIYPIIAKPSDDGCSSAVKKIK 692
Query: 744 CAEDLTVYVKAL--EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 801
++L Y + + EE I + S G+ E F + D L
Sbjct: 693 NRDELRAYTRLMFGEEA---IQGSVSSSVLGL----------KYNEEFPQKDYFLI---- 735
Query: 802 TNKNADRLMWKGNSR-WVEITVGVIGKCGSMHSL-----MPSVTVKESGDILSLEEKFQG 855
+ L+ KGN++ ++E+T G++ + ++ PS ++ +GD+LSLEEKF
Sbjct: 736 -----EDLVSKGNAKHFLEVTGGLMTRFNDKGNVEYEIFEPSESLA-TGDVLSLEEKFLA 789
Query: 856 GTGINLTPPPASIMST---EALDKCKQRIELIANALQLEGFSRIDAFVNV---DNGEVLI 909
G G N+TP + + + + ++ +A L ++G++RIDAFV V + E +I
Sbjct: 790 GEGQNITPARYTTNKADYEQVASEVRATLKRVAEVLNIQGYARIDAFVRVFENNRSETII 849
Query: 910 IEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
IEVN++PGMTP+T + HQ P+ F +L G ER
Sbjct: 850 IEVNSLPGMTPATCIFHQTAING--YKPYDFIDNILTFGIER 889
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 40/222 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSNTP 136
+R+G+I GG S ER IS R+V D++ D ++D +L + + Q +Y T
Sbjct: 1 MRIGIIFGGQSREREISFAGGRTVYDNLNKDIFTTVPIFVD-SLGQFILLDWQYIYKGTI 59
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLA------------------------ANVDIVFPTIH 172
DF E L + + E L +D F +H
Sbjct: 60 RDFYPPFEFLPKSIHGFQVYVESLGDLPKEERDAMIQKVGRKIEPSDLKELIDFAFLALH 119
Query: 173 GRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL------- 225
G +GEDG IQ +L+ N+P+ G+G +KY ++ Q P+++
Sbjct: 120 GPYGEDGAIQGMLDWNNIPYSGSGILPSAIGINKY-IQKKLVAQASFNGPNYVTYKKSTW 178
Query: 226 LQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV 267
L+G++ L F ++ P VVK GSSIG+TV
Sbjct: 179 LKGADTK--ALLAHFESSVGFP----FVVKAPSQGSSIGITV 214
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 44/189 (23%)
Query: 65 DQTMAKEARGGR-VLRVGLICGGPSAERGISLNSARSVLDHIQ-------------GDDL 110
DQ ++ E + +++ ++ GG S+ER IS+ S R++ + + G D
Sbjct: 462 DQAISSEKNSSKEKIKIAVVMGGYSSERHISVESGRNIFEKLSSSTKYQPLPVFLTGSDE 521
Query: 111 LVRCYYIDRNL----NAYAISSAQVYSNTPADFDFK-----LESLAQGFGSLSEFA---- 157
R + + N+ NA I + +FK +E +A+ S+S
Sbjct: 522 QHRLFILPINILLKDNADDIREKVI--------NFKGHHPIIEHIAKETESISSRYVSNA 573
Query: 158 ---------EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYD 208
+ L+ VD VF +HGR GEDG +Q+ LEKY +P+ G+G ++ + +K++
Sbjct: 574 IKDPKEISYKELSELVDGVFIALHGRPGEDGSMQKELEKYQLPYNGSGIQSSQITINKFE 633
Query: 209 ASLEMSKQG 217
+ + + G
Sbjct: 634 TNRILREHG 642
Score = 46.6 bits (109), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 37/184 (20%)
Query: 496 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 555
+IFGG + ER++S G V+ NL DI T + S+ +D
Sbjct: 5 IIFGGQSREREISFAGGRTVYDNLN--KDIFTTVPIFVDSLGQFILLD------------ 50
Query: 556 VWSLPYSLVLR--HTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
W Y +R + E L I QV + + L K
Sbjct: 51 -WQYIYKGTIRDFYPPFEFLPKSIHGF-------------QVYVESLGDLPKEERDAMIQ 96
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ E I A F+A+HG GEDG +Q +L+ +PY+G G++ S
Sbjct: 97 KVGRKIEPSDLKELIDFA-------FLALHGPYGEDGAIQGMLDWNNIPYSGSGILPSAI 149
Query: 674 CMDK 677
++K
Sbjct: 150 GINK 153
>gi|379729222|ref|YP_005321418.1| D-alanine--D-alanine ligase [Saprospira grandis str. Lewin]
gi|378574833|gb|AFC23834.1| D-alanine--D-alanine ligase [Saprospira grandis str. Lewin]
Length = 902
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 190/693 (27%), Positives = 304/693 (43%), Gaps = 135/693 (19%)
Query: 287 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 346
++ V++E F+EG EF+ +V+ G + L PTE+ ++ K+ +F+YR
Sbjct: 304 EESVLLEGFIEG-REFSCVVIQDEDG---QAIALPPTEI---------IKGKE-LFDYRS 349
Query: 347 KYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 406
KYL TP P I +IR+ LF+ L +ARIDG+
Sbjct: 350 KYLAGLSRKL-TPIDLPEAQIQAIRQECERLFRFLEFDVYARIDGFIQAD---------- 398
Query: 407 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA-------CSRF 459
G I+ D N SGM +SF F QA+++G + S+ L II + C R
Sbjct: 399 -------GRIILNDPNTTSGMLPSSFFFHQAAEIGLNPSHFLSFIIHRSLLARSRKCLR- 450
Query: 460 PNLASYNSVSSHLPGRSSGSKPTEALNKREG----IREVFVIFGGDTSERQVSLMSGTNV 515
PN +Y + + L + + EG +++V VI GG +SER +S+ SG N+
Sbjct: 451 PN--NYGQLLARLESE---------MQRLEGEVAELQKVAVILGGYSSERHISVESGRNI 499
Query: 516 WLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAA 575
+ L + D P L + + ++ LP +L+L+ +++
Sbjct: 500 YEKLASSADYLPFPVFLTGK---------------AEDQQLYELPINLLLKDNADDI--- 541
Query: 576 CIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA---- 631
L N V+ +++ +++ + IA++ R S + L+
Sbjct: 542 ------------RDKLLNYKVHPIIQKIRQETA----HIANQFSGRSSRLDPRSLSFDEL 585
Query: 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 691
E FIA+HG GEDG LQ L G+ + G ++ +DK + L L G
Sbjct: 586 SEETRLAFIALHGRPGEDGALQRELAKRGIAFNGSEADSAALTIDKYQS---LQKLKAAG 642
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+ + + K D L P + + KL L KP DGCS+ V ++ +L +
Sbjct: 643 LPVTEQILLSKSDYLAQPEQSL-QQAGEKLGW-PLIAKPVDDGCSSAVKKIKNEAELEAF 700
Query: 752 VKAL--EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
+ AL EE +L P + R + + P + + E VE + L
Sbjct: 701 LAALFREEDIL--PKIAQERLAILPKEEFPQKQYALLEQLVEQKDAL------------- 745
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLM-----PSVTVKESGDILSLEEKFQGGTGINLTPP 864
++E+TVG++ + S+ PS T+ SG+ILSLEEKF G G N+TP
Sbjct: 746 ------HFLEVTVGLLCHHEADGSIRYEVFEPSETLA-SGEILSLEEKFLAGEGQNITPA 798
Query: 865 PASIMSTEALD---KCKQRIELIANALQLEGFSRIDAFVNV---DNGEVLIIEVNTVPGM 918
++ E + K +E A L + G++RIDAFV + E L+IEVN++PGM
Sbjct: 799 RLAVGELEYAPLAAQIKADLEQAARILGVTGYARIDAFVRIYADGRAETLVIEVNSLPGM 858
Query: 919 TPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
TP+T + HQ P F R++L G ER
Sbjct: 859 TPATCIFHQTAING--YQPFDFIRQILTFGQER 889
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 70/335 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
F+++HG GEDG LQ +LEA G+PY+G G+ AS MDK + K
Sbjct: 114 AFLSLHGEWGEDGQLQGMLEALGIPYSGSGIRASSLGMDK----------------SFQK 157
Query: 698 DVRRKEDLLKTPIVDIWH-----ELTSKLQCKT-----LCVKPARDGCSTGVARLCCAED 747
+ + PI IW EL + Q K L V+P+ G S GV + AED
Sbjct: 158 KMMQAGGFESPPIQQIWAKDWSGELPNLEQLKKEMGFPLVVRPSNQGSSIGVRIVEQAED 217
Query: 748 LTVYVKALEECLLRIPPNS-----FSRAHGM----------------IEMPNPPPEI-LI 785
L + ALE + ++ SR + +E+ P + L+
Sbjct: 218 L---LDALENAFFGLEISAEDWQQMSREEQIQWMRKLLDIRSGLGFPLEVEGPKKDKQLL 274
Query: 786 FEP---FVETDEILFSSQS------TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 836
+ P D+ L S + + ++ +G E + VI +P
Sbjct: 275 YHPEQLLALLDKELGQGHSPKLRLQSQYREESVLLEGFIEGREFSCVVIQDEDGQAIALP 334
Query: 837 SVTVKESGDILSLEEKFQGGTGINLTP---PPASIMSTEALDKCKQRIELIANALQLEGF 893
+ + ++ K+ G LTP P A I + +Q E + L+ + +
Sbjct: 335 PTEIIKGKELFDYRSKYLAGLSRKLTPIDLPEAQIQA------IRQECERLFRFLEFDVY 388
Query: 894 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+RID F+ D G +++ + NT GM PS+ HQA
Sbjct: 389 ARIDGFIQAD-GRIILNDPNTTSGMLPSSFFFHQA 422
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 31/229 (13%)
Query: 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP 136
+L +G+ GPS ER I+ R+V D++ ++D + +Y +
Sbjct: 1 MLNIGIFLAGPSREREIAFAGGRTVYDNLNKQLFRPIPIFVDSFGQLCLLDWEYLYKGSI 60
Query: 137 ADFDFKLESL----------AQGFGSLSEFAEHLAANV-------------DIVFPTIHG 173
DF +E+L + G + ++ L A + D F ++HG
Sbjct: 61 RDFYPPVEALPPSPHHFQIYVESLGLSKQASKELLAQIGRPISFSELPELIDFAFLSLHG 120
Query: 174 RFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233
+GEDG +Q +LE +P+ G+G RA DK M GF + P + + +
Sbjct: 121 EWGEDGQLQGMLEALGIPYSGSGIRASSLGMDKSFQKKMMQAGGFESPPIQQIWAKDWS- 179
Query: 234 SELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTV---AYGVIDSLKKA 278
EL N +L G +VV+P+ GSSIGV + A ++D+L+ A
Sbjct: 180 GELPN---LEQLKKEMGFPLVVRPSNQGSSIGVRIVEQAEDLLDALENA 225
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 91/231 (39%), Gaps = 31/231 (13%)
Query: 63 LEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGD-DLL---------- 111
LE + E + +V +I GG S+ER IS+ S R++ + + D L
Sbjct: 461 LESEMQRLEGEVAELQKVAVILGGYSSERHISVESGRNIYEKLASSADYLPFPVFLTGKA 520
Query: 112 --VRCYYIDRNL----NAYAISSAQV-YSNTPADFDFKLES--LAQGFGSLSEFAE---- 158
+ Y + NL NA I + Y P + E+ +A F S +
Sbjct: 521 EDQQLYELPINLLLKDNADDIRDKLLNYKVHPIIQKIRQETAHIANQFSGRSSRLDPRSL 580
Query: 159 ---HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSK 215
L+ + F +HGR GEDG +Q L K + F G+ + + DKY + ++
Sbjct: 581 SFDELSEETRLAFIALHGRPGEDGALQRELAKRGIAFNGSEADSAALTIDKYQSLQKLKA 640
Query: 216 QGFITVPSFLLQGSE-VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGV 265
G LL S+ + + E S KL ++ KP G S V
Sbjct: 641 AGLPVTEQILLSKSDYLAQPEQSLQQAGEKL---GWPLIAKPVDDGCSSAV 688
>gi|424841345|ref|ZP_18265970.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Saprospira grandis
DSM 2844]
gi|395319543|gb|EJF52464.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Saprospira grandis
DSM 2844]
Length = 902
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 191/694 (27%), Positives = 298/694 (42%), Gaps = 137/694 (19%)
Query: 287 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 346
++ V++E F+EG EF+ +V+ G + L PTE+ ++ K+ +F+YR
Sbjct: 304 EESVLLEGFIEG-REFSCVVIQDEDG---QAIALPPTEI---------IKGKE-LFDYRS 349
Query: 347 KYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 406
KYL TP P I +IR+ LF+ L +ARIDG+
Sbjct: 350 KYLAGLSRKL-TPIDLPEAQIQAIRQECERLFRFLEFDVYARIDGFIQAD---------- 398
Query: 407 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA-------CSRF 459
G I+ D N SGM +SF F QA+++G + S+ L II + C R
Sbjct: 399 -------GRIILNDPNTTSGMLPSSFFFHQAAEIGLNPSHFLSFIIHRSLLARSRKCLR- 450
Query: 460 PN-----LASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTN 514
PN LA S L G + +++V VI GG +SER +S+ SG N
Sbjct: 451 PNNYGQLLAQLESEMQRLDGEVAE------------LQKVAVILGGYSSERHISVESGRN 498
Query: 515 VWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLA 574
++ L + D P L + + ++ LP +L+L+ +++
Sbjct: 499 IYEKLASSADYLPFPVFLTGK---------------AEDQQLYELPINLLLKDNADDI-- 541
Query: 575 ACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA--- 631
L N V+ +++ +++ + IA + R S + L+
Sbjct: 542 -------------RDKLLNYKVHPIIQKIRQETA----HIAQQFSGRSSRLDPRPLSFDE 584
Query: 632 -KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 690
E FIA+HG GEDG LQ L G+ + G ++ +DK + L L
Sbjct: 585 LGEESRLAFIALHGRPGEDGALQRELAKRGIAFNGSEADSAALTIDKYQS---LQKLKAA 641
Query: 691 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
G+ + + K D L P + K L KP DGCS+ V ++ +L
Sbjct: 642 GLPVTEQILLSKNDYLAQPEKSLQQ--AGKKLGWPLIAKPVDDGCSSAVKKIKNEAELEA 699
Query: 751 YVKAL--EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
++ AL EE LL P + R + + P + + E VE + L
Sbjct: 700 FLAALFREEDLL--PKIAQERLAILPKEEFPQKQYALLEQLVEQKDAL------------ 745
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLM-----PSVTVKESGDILSLEEKFQGGTGINLTP 863
++E+TVG++ + S+ PS T+ SG+ILSLEEKF G G N+TP
Sbjct: 746 -------HFLEVTVGLLCHHEADGSIRYEVFEPSETLA-SGEILSLEEKFLAGEGQNITP 797
Query: 864 PPASIMSTEALD---KCKQRIELIANALQLEGFSRIDAFVNV---DNGEVLIIEVNTVPG 917
++ E + K +E A L + G++RIDAFV + E L+IEVN++PG
Sbjct: 798 ARLAVGKLEYAPLAAQIKVDLEQAARILGVTGYARIDAFVRIYADGRAETLVIEVNSLPG 857
Query: 918 MTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
MTP+T + HQ P F R++L G ER
Sbjct: 858 MTPATCIFHQTAING--YQPFDFIRQILTFGQER 889
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 135/337 (40%), Gaps = 74/337 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
F+++HG GEDG LQ +LEA G+PY+G G+ AS MDK + K
Sbjct: 114 AFLSLHGEWGEDGQLQGMLEALGIPYSGSGIRASSLGMDK----------------SFQK 157
Query: 698 DVRRKEDLLKTPIVDIWH-----ELTSKLQCKT-----LCVKPARDGCSTGVARLCCAED 747
+ + PI IW EL + Q K L V+P+ G S GV + ED
Sbjct: 158 KMMQAGGFESPPIQQIWAKDWSGELPNLEQLKKEMGFPLVVRPSNQGSSIGVRIVNQPED 217
Query: 748 LTVYVKALEECLLRIPPNS-----FSRAHGM----------------IEMPNPPPEI-LI 785
L + ALE+ + ++ SR + +E+ P + L+
Sbjct: 218 L---LDALEDAFFGLEISAEDWQQMSREEQIQWMRKLLDIRSGLGFPLEVEGPKKDKQLL 274
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSR-----------WVEITVGVIGKCGSMHSL 834
+ P E LF + ++ +L + R E + VI
Sbjct: 275 YHP--EQLLALFDKELGQGHSPKLRLQSQYREESVLLEGFIEGREFSCVVIQDEDGQAIA 332
Query: 835 MPSVTVKESGDILSLEEKFQGGTGINLTP---PPASIMSTEALDKCKQRIELIANALQLE 891
+P + + ++ K+ G LTP P A I + +Q E + L+ +
Sbjct: 333 LPPTEIIKGKELFDYRSKYLAGLSRKLTPIDLPEAQIQA------IRQECERLFRFLEFD 386
Query: 892 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
++RID F+ D G +++ + NT GM PS+ HQA
Sbjct: 387 VYARIDGFIQAD-GRIILNDPNTTSGMLPSSFFFHQA 422
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 31/229 (13%)
Query: 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP 136
+L +G+ GPS ER I+ R+V D++ ++D + +Y +
Sbjct: 1 MLNIGIFLAGPSREREIAFAGGRTVYDNLNKQLFRPIPIFVDSFGQLCLLDWEYLYKGSI 60
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAAN-----------------------VDIVFPTIHG 173
DF +E+L + E L + +D F ++HG
Sbjct: 61 RDFYPPVEALPPSPNQFQIYVESLGLSKQASKELLAQIGRPISFSELPELIDFAFLSLHG 120
Query: 174 RFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233
+GEDG +Q +LE +P+ G+G RA DK M GF + P + + +
Sbjct: 121 EWGEDGQLQGMLEALGIPYSGSGIRASSLGMDKSFQKKMMQAGGFESPPIQQIWAKDWS- 179
Query: 234 SELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVA---YGVIDSLKKA 278
EL N +L G +VV+P+ GSSIGV + ++D+L+ A
Sbjct: 180 GELPN---LEQLKKEMGFPLVVRPSNQGSSIGVRIVNQPEDLLDALEDA 225
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 101/260 (38%), Gaps = 52/260 (20%)
Query: 2 TSLAFSSSFSFLRNDAVG--------GITFRSPKVLSRNRKLKLKKSACRYATKTTSLGV 53
TS SSF F + +G I RS +L+R+RK L+ + Y L
Sbjct: 409 TSGMLPSSFFFHQAAEIGLNPSHFLSFIIHRS--LLARSRKC-LRPN--NYGQLLAQLES 463
Query: 54 EGARASAEVLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGD-DLL- 111
E R EV E Q +V +I GG S+ER IS+ S R++ + + D L
Sbjct: 464 EMQRLDGEVAELQ------------KVAVILGGYSSERHISVESGRNIYEKLASSADYLP 511
Query: 112 -----------VRCYYIDRNL----NAYAISSAQV-YSNTPADFDFKLES--LAQGFGSL 153
+ Y + NL NA I + Y P + E+ +AQ F
Sbjct: 512 FPVFLTGKAEDQQLYELPINLLLKDNADDIRDKLLNYKVHPIIQKIRQETAHIAQQFSGR 571
Query: 154 SEFAE-------HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDK 206
S + L + F +HGR GEDG +Q L K + F G+ + + DK
Sbjct: 572 SSRLDPRPLSFDELGEESRLAFIALHGRPGEDGALQRELAKRGIAFNGSEADSAALTIDK 631
Query: 207 YDASLEMSKQGFITVPSFLL 226
Y + ++ G LL
Sbjct: 632 YQSLQKLKAAGLPVTEQILL 651
>gi|384251700|gb|EIE25177.1| hypothetical protein COCSUDRAFT_61418 [Coccomyxa subellipsoidea
C-169]
Length = 1620
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 138/504 (27%), Positives = 235/504 (46%), Gaps = 81/504 (16%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTP---------------------- 529
+ ++++ GGD+SER+ SL SG WL L+ IEV P
Sbjct: 1060 QRIWILTGGDSSERRESLASGLAAWLRLR--TQIEVQPELFLLAPRNAGADLAERKGTLL 1117
Query: 530 -------CLLASSIDCSSGMDA-NITDP-----DSSSRVVWSLPYSLVLRHTTEEVLAAC 576
++ + D + NI P + VW++PY+ L T E++ C
Sbjct: 1118 QRRAELLAMVGAEEDLPEELQVQNIRRPPLRPVEPHVMGVWAVPYAAALHATPEDIHEVC 1177
Query: 577 IEAIEPDRAAFTSHLR----------------NQVVNDLVEGLKKHSWFTGFDIADELPM 620
A+ RAA T+ R Q+V V G+ +W + P
Sbjct: 1178 ERAL---RAANTADHRRAEEDVAEDELRKYVAQQLVTAEVHGVAG-TWGGNPNQLPPPPR 1233
Query: 621 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
+ + A+ QA V +A+HGG+GE+GT+Q+LL+ GVP TGP A+ +DK AT
Sbjct: 1234 YMDLTNFAMEAEAAQAVVLLALHGGMGENGTVQALLQGYGVPITGPSWDAASVAIDKAAT 1293
Query: 681 SLALNHLADLGVLTINK-DVRRKEDLLKTPIVDIWHELTSKLQ-----CKTLCVKPARDG 734
+ L L V T K V + L + H L ++Q +L +KPA DG
Sbjct: 1294 AEVLAELEVHNVSTAPKFPVTLQRLLAAADDEEECHALFEEMQDAIGGSNSLVIKPAADG 1353
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIP------PNSFSRAHGMIEMPNPPPEILIFEP 788
VARL DL Y A+ + IP P S +A I +P PP + + EP
Sbjct: 1354 GPAAVARLGSHTDLGWYACAVADRDAAIPAGVLEQPPSRQQAGAPIPLPLTPPPVFVVEP 1413
Query: 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 848
FV+T+ + + + + + W G+SRW+ +++G++G+ G+M +L P++ + +
Sbjct: 1414 FVDTESVRMVTGEDGRPS--IEWTGDSRWLHVSIGLLGQVGTMRALGPTLKLPDQ----- 1466
Query: 849 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
G + +TPPP ++ + L + R E++A+AL L G + ++A ++ ++ +++
Sbjct: 1467 -----TGMQTVRVTPPPGDLVREDVLAGVRARAEMVADALGLNGAASLEALMHAESADLV 1521
Query: 909 IIEVNTVPGMTPSTVLIHQALSEQ 932
+IE N +P ++P + L QA+ ++
Sbjct: 1522 LIEANAIPDISPGSDLFQQAMMDE 1545
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 18/170 (10%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLD------HIQ-----GDDLLVRCY-------Y 116
G LRVG+ICGG A R SL+SAR++LD H+Q G ++ Y +
Sbjct: 307 GPCLRVGVICGGTGASREASLHSARTLLDQLDTIHHLQAAAWHGVEMDPEQYGINVVPCF 366
Query: 117 IDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFG 176
ID + + +S Q+ S++ AD DF L Q F S+ E AE L D++ P G
Sbjct: 367 IDSSGRTHLLSVEQLQSHSAADLDFLLAHTDQAFPSMEEAAEQLKEVADVMVPMATGDLA 426
Query: 177 EDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL 226
E+G +Q +L+K +PFVG+ S A A + + EM + GF T+ L
Sbjct: 427 EEGQLQALLQKAGMPFVGSPSEAVVLAGSRARLAGEMERLGFPTLQHLAL 476
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 52/217 (23%)
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAG----SSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
L NW LD +SG V KP G V +A G+ + A+ ++ +G + VV
Sbjct: 579 LWNWAQAAGLDAHSGVFVAKPGGVGRGDRPGANVVMARGLPAAALAARDLMEQG-HESVV 637
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL------------QFQGSVDVREK- 338
VE + G + V++ G P+ LLP++ EL + + RE
Sbjct: 638 VERHMGGAVRVSVAVVEGREG----PIALLPSQEELICPEATFLDAGLEAERQAARREGY 693
Query: 339 -----DAIFNYRRKYL-----------------PTQQVAYHTPPRFPIVVINSIREGASL 376
+A+ +R L P ++ PPR P ++ +R+GA+
Sbjct: 694 SEEQIEAVLAGQRDALLQDTHGMSYAQCLEEDFPDTRLRQSCPPRLPKELVWGLRQGAAR 753
Query: 377 LFQ-------RLGLCDFARIDGWF-LPSSTHVFSSSE 405
LF+ LGL D A I+GW LP SS++
Sbjct: 754 LFKASHLLSPELGLRDAAVIEGWVELPKEEPASSSAD 790
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 150 FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDA 209
+ L+ FA A +V +HG GE+G +Q +L+ Y VP G A A DK
Sbjct: 1234 YMDLTNFAMEAEAAQAVVLLALHGGMGENGTVQALLQGYGVPITGPSWDAASVAIDKAAT 1293
Query: 210 S---LEMSKQGFITVPSF 224
+ E+ T P F
Sbjct: 1294 AEVLAELEVHNVSTAPKF 1311
>gi|145343359|ref|XP_001416315.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576540|gb|ABO94608.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 683
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 152/557 (27%), Positives = 249/557 (44%), Gaps = 93/557 (16%)
Query: 424 ISGMEQT-SFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPT 482
+SG + S +F A+ VG S +++ ++ +A SR AS + +
Sbjct: 180 VSGTARAWSKMFVHAAAVGLSMESVIEHLVKNATSR---EASTRKIVAA--------PAP 228
Query: 483 EALNKREGIREVFVIFGGDTS--ERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSS 540
+ V+V+FGG S +R S +G N++L L+ I+VTP LL S+
Sbjct: 229 APASTSSASMRVYVLFGGAASGGDRLSSCYAGRNLYLTLRNIPTIDVTPVLLMPPAANSN 288
Query: 541 GMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLV 600
G+ + P W LPY+ + + +A + PD F + R +
Sbjct: 289 GL---VDAP------AWRLPYAFAV--NPAQWSSADVPPRMPDLGRFATARRVRAE---- 333
Query: 601 EGLKKHSWFT--GFDIA---DELPMRHSINEWIKLAKENQATVFIAVHGGIGE-DGTLQS 654
L+K+ W + D A D P + + LA A VF A G +GE DG+LQ
Sbjct: 334 --LEKYLWISPPRDDAALAFDATPRVSRLGALLSLAASEGAIVFNA--GVVGEPDGSLQQ 389
Query: 655 LLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-- 712
L + G YTG G +AS+ C DK ATS AL ++ D+GV +NK L+ +
Sbjct: 390 LCVSSGAAYTGCGPLASRVCADKAATSKALGNMRDVGVGCLNKRFVPTATLVSKATEESG 449
Query: 713 ------------IWHELTSKL-----QCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+W ++ L + + VKP GV RL D+ Y +++
Sbjct: 450 WGGRARAESAKRLWLDVVGSLGGASATARGVIVKPVTKSSFGGVRRLMNDNDMLAYAESI 509
Query: 756 EECLLRIPPNSFSRAHGMI-EMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW--K 812
+ A G E N +FEPF + E+ S + + ++
Sbjct: 510 AAAM----------ASGQFPEGTNLAARGYVFEPFFDAAEV-----SIRGDGEIVLDPDD 554
Query: 813 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
G+ RW+EI + V G K G +H+ PSV ++ G + I+ + ++S
Sbjct: 555 GSKRWIEIEIVVFGDKPGKLHAFTPSVRARD------------GRSAIDKSK---LVLSE 599
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM-TPSTVLIHQALS 930
+ ++R + +ALQ+EG+++++AF N+DNGE+++I+V+TVP M +PS L QAL+
Sbjct: 600 RVVGLVRERARRVGDALQVEGYAKVNAFANLDNGEMIVIDVDTVPNMSSPSAPLFEQALA 659
Query: 931 EQPPMYPHQFFRKVLDL 947
E P+ F + L L
Sbjct: 660 EDSPVDAETFCARALSL 676
>gi|406025304|ref|YP_006705605.1| hypothetical protein CAHE_0408 [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432903|emb|CCM10185.1| Putative uncharacterized protein [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 439
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 140/474 (29%), Positives = 210/474 (44%), Gaps = 76/474 (16%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
+++ V+ GG T ER VSL SG N++ L A N E P L+ S +
Sbjct: 3 KKIGVLMGGFTPERHVSLESGRNIYSKLAASNQYEALPLFLSGS---------------T 47
Query: 552 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRA-AFTSHLRNQVVNDLVEGLKKHSWFT 610
+ ++ LP +L+L+ ++V A + A A + +R + V+ + + K + FT
Sbjct: 48 KAFRIFILPAALLLKDNADDVHDALLHPTRFRAAEALLTVIRQEAVS-ITKNYAKDAIFT 106
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
A+EL KE +FIA+HG GEDGTLQ +LE +PY G G+
Sbjct: 107 ----AEELTF--------SALKERIDFIFIALHGRPGEDGTLQKILEKYDIPYNGSGIAT 154
Query: 671 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
+ +DK AT+ LA G + V ++D + I + L + KP
Sbjct: 155 TALTIDKYATN---QFLAKKGFQVAQQLVVTQKDWDDDQVTTI--HAVANLFTYPIIAKP 209
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPP---NSFSRAHGM-IEMPNPPPEILIF 786
DGCS GV R+ ++ LT Y A R P N + G+ + P + +
Sbjct: 210 VDDGCSAGVMRIVNSDMLTAYASA----TFRDKPLMSNKVMQPLGLQVADYIPQQKRFLL 265
Query: 787 EPFVETD-EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
E +E D + L ++T + G + + PS TV
Sbjct: 266 EALIEKDPKALACLETTTGLLTHIDHNGKTLY--------------EVFEPSETVAVDA- 310
Query: 846 ILSLEEKFQGGTGINLTPPP-------ASIMSTEALDKCKQRIELIANALQLEGFSRIDA 898
ILSLEEKF G G N+TP A+I+S K K + IA L ++G++RIDA
Sbjct: 311 ILSLEEKFLAGEGHNITPARFDGNAKVAAIIS----KKVKHELANIATVLNIQGYARIDA 366
Query: 899 FVNV---DNGEVLIIEVNTVPGMTPSTVLIHQ-ALSEQPPMYPHQFFRKVLDLG 948
FV + EV IIE+N +P MTP+T + HQ AL+ P F ++ G
Sbjct: 367 FVKIYPHQKIEVWIIEINALPAMTPATCIFHQCALNGYTPF---DFIHAIIQYG 417
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 95/453 (20%), Positives = 178/453 (39%), Gaps = 94/453 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHI--------------------------------- 105
++G++ GG + ER +SL S R++ +
Sbjct: 4 KIGVLMGGFTPERHVSLESGRNIYSKLAASNQYEALPLFLSGSTKAFRIFILPAALLLKD 63
Query: 106 QGDDLLVRCYYIDRNLNAYAI------SSAQVYSNTPADFDFKLESLAQGFGSLSEFAEH 159
DD+ + R A A+ + + N D F E L F +L E
Sbjct: 64 NADDVHDALLHPTRFRAAEALLTVIRQEAVSITKNYAKDAIFTAEELT--FSALKE---- 117
Query: 160 LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFI 219
+D +F +HGR GEDG +Q++LEKY++P+ G+G DKY + ++K+GF
Sbjct: 118 ---RIDFIFIALHGRPGEDGTLQKILEKYDIPYNGSGIATTALTIDKYATNQFLAKKGFQ 174
Query: 220 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVT--------VAYGV 271
++ + ++ +++ L + ++ KP G S GV AY
Sbjct: 175 VAQQLVVTQKDWDDDQVTTIHAVANL--FTYPIIAKPVDDGCSAGVMRIVNSDMLTAYAS 232
Query: 272 -------IDSLKKAKGIILEGID-----DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
+ S K + + L+ D R ++E +E + A L+ +G H
Sbjct: 233 ATFRDKPLMSNKVMQPLGLQVADYIPQQKRFLLEALIEKDPKALA-CLETTTGLLTHIDH 291
Query: 320 LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF------PIVVINSIREG 373
T E+ F+ S V DAI + K+L + TP RF ++ ++
Sbjct: 292 NGKTLYEV-FEPSETV-AVDAILSLEEKFLAGEGHNI-TPARFDGNAKVAAIISKKVKHE 348
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
+ + L + +ARID + ++ + + + +IN + M + +
Sbjct: 349 LANIATVLNIQGYARIDAF-----VKIYPHQKIE--------VWIIEINALPAMTPATCI 395
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPNLASYN 466
F Q + G++ + + II + ++ N A+Y+
Sbjct: 396 FHQCALNGYTPFDFIHAIIQYGWTK-RNFAAYS 427
>gi|85858828|ref|YP_461030.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
gi|85721919|gb|ABC76862.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
Length = 352
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 175/386 (45%), Gaps = 57/386 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L+VG+I GG S+ER +SLNS R+V D++ + ++D + + + NT
Sbjct: 5 LKVGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTTR 64
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D +L+ A+ E L +D F ++HG++G+DG IQ +LE +P+ G G
Sbjct: 65 DITERLKGEARRIAY-----EDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGV 119
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
A DK+ + G + VP LL E E + V +++ G KP
Sbjct: 120 MASALGMDKHLQQKILRAAG-VAVPESLLVREE--EWRQDSQIVKDRVKEFPGYPCFTKP 176
Query: 257 TRAGSSIGVTVA-------YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
R GSS+GVTV G+ D+LK D V+VE +LE G EF+ IVL+
Sbjct: 177 IREGSSVGVTVVRDEADLERGMEDALK---------WDRAVLVEEYLE-GREFSCIVLEE 226
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
F HP+ L TE+ Q + F Y KY+P + + P P V
Sbjct: 227 EGQF--HPLEL--TEIHPQSE----------FFTYDDKYMPGRCRKFTPPKTIPPDVTEQ 272
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
I+ F+ LG + RIDG+ L G IL TD N SGM
Sbjct: 273 IKAEVIRAFKALGFRSYGRIDGFILND-----------------GRILITDPNSSSGMAP 315
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHA 455
+SF F+QA+ G S I+ T+I +A
Sbjct: 316 SSFFFEQAACAGMLPSMIITTLIENA 341
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 167/439 (38%), Gaps = 118/439 (26%)
Query: 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDP 549
G +V +I GG +SER+VSL SG NV+ NL A E P + D G+
Sbjct: 3 GRLKVGIILGGMSSEREVSLNSGRNVYDNLDA-EFYEGVPVFM----DAQGGL------- 50
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
W LP+ L+ ++TT ++ T L+ + E LKK F
Sbjct: 51 -------WILPWHLISQNTTRDI---------------TERLKGEARRIAYEDLKKEIDF 88
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
FI++HG G+DG +Q LLE +PYTGPGVM
Sbjct: 89 A----------------------------FISLHGKYGDDGCIQGLLELLRIPYTGPGVM 120
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
AS MDK L L GV + R+E+ + I + + K
Sbjct: 121 ASALGMDK---HLQQKILRAAGVAVPESLLVREEEWRQDS--QIVKDRVKEFPGYPCFTK 175
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
P R+G S GV + DL + +E+ L + RA ++ E +
Sbjct: 176 PIREGSSVGVTVVRDEADLE---RGMEDAL------KWDRA-------------VLVEEY 213
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 849
+E E + V+ + G H L + + +
Sbjct: 214 LEGR-------------------------EFSCIVLEEEGQFHPL-ELTEIHPQSEFFTY 247
Query: 850 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 909
++K+ G TPP + + ++ K + AL + RID F+ +++G +LI
Sbjct: 248 DDKYMPGRCRKFTPP--KTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFI-LNDGRILI 304
Query: 910 IEVNTVPGMTPSTVLIHQA 928
+ N+ GM PS+ QA
Sbjct: 305 TDPNSSSGMAPSSFFFEQA 323
>gi|308800946|ref|XP_003075254.1| unnamed protein product [Ostreococcus tauri]
gi|116061808|emb|CAL52526.1| unnamed protein product, partial [Ostreococcus tauri]
Length = 561
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 145/543 (26%), Positives = 231/543 (42%), Gaps = 88/543 (16%)
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIR 492
+F A+ VG + L + +A R A +S S SK +A ++
Sbjct: 68 MFAHAATVGLPIESALEHLAKNAMHR----AGTRKISVSAQATDSPSKTAKAAGQK---M 120
Query: 493 EVFVIFGG---DTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDP 549
V+++FGG +T+ R S +G ++L L+ + I+ TP LL + S G+++ + P
Sbjct: 121 RVYIVFGGQSSNTTSRHKSCYTGRQLYLTLRNVDTIDATPVLL--TPQASRGLNSLVDAP 178
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEG-LKKHSW 608
W LPY+ + + + PD +++ R V G L K+ W
Sbjct: 179 ------AWRLPYAWAMNSSQWDA------PKPPDLGRYSTSRR-------VRGELDKYLW 219
Query: 609 FT--GFDIA---DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPY 663
T D A + P + + LA A VF V +DG+LQ L + GV Y
Sbjct: 220 VTPPKDDPALAFEATPRVSRLGALLSLAASEGAIVFNCV----ADDGSLQQLCTSAGVAY 275
Query: 664 TGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD----------- 712
TG G +AS+ DKVA + L L G+ +NK LL + +
Sbjct: 276 TGCGPLASRVSADKVALAKTLGSLRSEGIACLNKRFVPAATLLSKALEESSWGGRARGEG 335
Query: 713 ---IWHELTSKLQCKTLC-----VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPP 764
IW ++ L V P DG S G A +D A E LL
Sbjct: 336 VKRIWLDVVGSLGGPAALPHGARVSPVADG-SIGSA----FDDFASSRVADENELLAFAE 390
Query: 765 NSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGV 824
+ ++ H P +FE + E E+ +S + + S+WVEITVGV
Sbjct: 391 DQANK-H--------PVRGYLFESYFEPAEVTLASDGES----LALSDSKSKWVEITVGV 437
Query: 825 IG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIEL 883
G + G++ + PSV + S L + + + +++ + ++R
Sbjct: 438 FGDRPGTLKAFAPSVRARTSDPRLK--------SHVFVIDIAGDVLNARVAAQARERARR 489
Query: 884 IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-PSTVLIHQALSEQPPMYPHQFFR 942
+A +Q+EGF+ IDA+ NVD GE+++ V+TVP MT P+ + QAL E PP+ F
Sbjct: 490 VAELMQVEGFASIDAYANVDTGEIVVAAVDTVPDMTCPNAPIFEQALMEDPPIDAEGFCV 549
Query: 943 KVL 945
K+L
Sbjct: 550 KLL 552
>gi|189502683|ref|YP_001958400.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498124|gb|ACE06671.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
5a2]
Length = 421
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 124/471 (26%), Positives = 213/471 (45%), Gaps = 75/471 (15%)
Query: 496 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 555
+I GG ++ER +S+ SG NV+ L + P L + P S
Sbjct: 5 IIMGGFSAERHISVESGRNVYEKLASSGTYTPIPIFLTGT-------------PLQHS-- 49
Query: 556 VWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIA 615
++ LP ++L+ + +++ ++ I T+ ++ +++ + F +
Sbjct: 50 LFILPIHILLKDSADDI-HERLKHISTTTDNSTNWTEEPAIDSIIK-----KYVGSFTMQ 103
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
P + E L +VFIA+HG GEDGTLQ++LE G+PY G GV + +
Sbjct: 104 ---PTAITYQELAHLVD----SVFIALHGRPGEDGTLQAILEQHGLPYNGSGVTTTSLTI 156
Query: 676 DKVATSLALN----HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
DK AT+ L+ ++A+ V+TI++ ++T E T K VKP
Sbjct: 157 DKFATNRFLHKHGIYVANQAVVTIDQWKNNTPATIETI------EATFKYP---FIVKPV 207
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
DGCS V ++ + L Y + + P N ++ G+ P ++ F+
Sbjct: 208 DDGCSVAVFKIQNKDMLIAYAENIFRADSNQPTN-LTQVLGL----KPNAAFPNYQQFLV 262
Query: 792 TDEILFSSQSTNKNADRLMWKGN-SRWVEITVGVIG----KCGSMHSLMPSVTVKESGDI 846
D L+ KG + ++EIT G++ + + + V +GDI
Sbjct: 263 ED---------------LIEKGTATHFLEITGGLLTHLDEQGNRQYEMFEPSEVVATGDI 307
Query: 847 LSLEEKFQGGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV- 902
LSLEEKF G G N+TP P + K K+ ++ +A + +EG++RIDA V +
Sbjct: 308 LSLEEKFLAGEGQNITPARFHPDPTTNLAISTKVKEDLQKVAQLVNIEGYARIDAMVKIY 367
Query: 903 -DNGEVLIIEVNTVPGMTPSTVLIHQ-ALSEQPPMYPHQFFRKVLDLGSER 951
+ E IIE+NT+P +TP+T + HQ A++ P F ++ G ++
Sbjct: 368 PTHIETWIIEINTLPALTPATCIFHQCAINGYTPF---DFIHTIIQYGYKK 415
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/448 (21%), Positives = 173/448 (38%), Gaps = 100/448 (22%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLD-----------------------------HI--- 105
+R+G+I GG SAER IS+ S R+V + HI
Sbjct: 1 MRIGIIMGGFSAERHISVESGRNVYEKLASSGTYTPIPIFLTGTPLQHSLFILPIHILLK 60
Query: 106 -QGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF-GSLSE-----FAE 158
DD+ R +I + ++ ++ PA ++S+ + + GS + +
Sbjct: 61 DSADDIHERLKHISTTTD-----NSTNWTEEPA-----IDSIIKKYVGSFTMQPTAITYQ 110
Query: 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF 218
LA VD VF +HGR GEDG +Q +LE++ +P+ G+G DK+ + + K G
Sbjct: 111 ELAHLVDSVFIALHGRPGEDGTLQAILEQHGLPYNGSGVTTTSLTIDKFATNRFLHKHGI 170
Query: 219 ITVPSFLL---QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGV--------TV 267
++ Q + + T K +VKP G S+ V +
Sbjct: 171 YVANQAVVTIDQWKNNTPATIETIEATFKY-----PFIVKPVDDGCSVAVFKIQNKDMLI 225
Query: 268 AYGV----IDSLKKAKGIILEGID--------DRVVVELFLEGGSEFTAIVLDVGSGFDC 315
AY DS + + G+ + +VE +E G+ L++ G
Sbjct: 226 AYAENIFRADSNQPTNLTQVLGLKPNAAFPNYQQFLVEDLIEKGT--ATHFLEITGGLLT 283
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ-----QVAYHTPPRFPIVVINSI 370
H + E+ F+ S V D I + K+L + +H P + + +
Sbjct: 284 HLDEQGNRQYEM-FEPSEVVATGD-ILSLEEKFLAGEGQNITPARFHPDPTTNLAISTKV 341
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E + Q + + +ARID TH+ ET W +IN + +
Sbjct: 342 KEDLQKVAQLVNIEGYARIDAMVKIYPTHI----ET------W----IIEINTLPALTPA 387
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
+ +F Q + G++ + + TII + +
Sbjct: 388 TCIFHQCAINGYTPFDFIHTIIQYGYKK 415
>gi|224029553|gb|ACN33852.1| unknown [Zea mays]
Length = 89
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 70/78 (89%)
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 929
S +AL +CK+ IE +ANAL LEGFSRIDAFVNV +GEVL+IEVNTVPGMTPSTVLIHQAL
Sbjct: 6 SEDALQRCKKSIETMANALGLEGFSRIDAFVNVRSGEVLLIEVNTVPGMTPSTVLIHQAL 65
Query: 930 SEQPPMYPHQFFRKVLDL 947
+E+PP+YP +FFR +LDL
Sbjct: 66 AEEPPVYPRRFFRTLLDL 83
>gi|189501741|ref|YP_001957458.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497182|gb|ACE05729.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
5a2]
Length = 475
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 118/457 (25%), Positives = 187/457 (40%), Gaps = 95/457 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT-- 135
+RVG+ GG S ER IS R+V D++ ++D N + +Y +
Sbjct: 5 IRVGIFLGGSSREREISFAGGRTVYDNLDKGLFEPIPIFVDSFNNFIQLDWRYLYQGSIR 64
Query: 136 ----PAD------FDFKLESLAQ-GFGSLSEF---------AEHLAANVDIVFPTIHGRF 175
P+D F +ESL LS++ AE L +D F ++HG
Sbjct: 65 DFYPPSDMLSLTKFQIYMESLGNLSPDQLSQYMARVGKKVTAEQLKGMIDFAFLSLHGPC 124
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
GEDG IQ +LE Y +P+ G+G DK M + GF+ P ++ + ++
Sbjct: 125 GEDGSIQGLLEWYKIPYSGSGILGTAVGIDKIVQKKWMQQAGFLVTPYSIIDRNTWQKTT 184
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGV-IDSLKKA--KGIILEGIDDRVVV 292
+ + +V+K R GSSIGV + Y ++ KA +E + +
Sbjct: 185 NKDALFEELIHTLGLPLVIKSPRQGSSIGVNIVYEKDFEAFTKAIHASFFIEQVTAKQWQ 244
Query: 293 ELFLEGGSEFTAIVLDVGSGFDC----------HPVVLL------------PTE-VELQF 329
EL + ++ ++D+ SG HP LL P + V LQ
Sbjct: 245 ELSPQAKEQWLIKLVDLRSGIGLPVEINGHIIYHPEALLNFVDNYFNSCESPLDLVSLQG 304
Query: 330 QGSV-----------------------------DVREKDAIFNYRRKYLPTQQVAYHTPP 360
+ SV ++ + D F+YR KYLP V TP
Sbjct: 305 EESVLVESFITGREFSCIVLQEAGNEPVALPPTEMLKGDLHFDYRAKYLPG-LVRKQTPM 363
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
P+ +N+I+E LF+ L +ARIDG +FSS + Y D
Sbjct: 364 TLPLAQLNTIKEACVQLFESLNFQVYARIDG--------IFSSDNSIY---------LND 406
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
N +GM +SFLF QA+++G + S +L +I ++ +
Sbjct: 407 PNTTAGMNPSSFLFHQAAEIGLNPSQLLTFLIRNSLA 443
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 100/472 (21%), Positives = 180/472 (38%), Gaps = 92/472 (19%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLAS-----SIDCSSGMDANITD 548
V + GG + ER++S G V+ NL E P + S +D +I D
Sbjct: 7 VGIFLGGSSREREISFAGGRTVYDNLDK-GLFEPIPIFVDSFNNFIQLDWRYLYQGSIRD 65
Query: 549 PDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDR-AAFTSHLRNQVVNDLVEGLKKHS 607
P S +L T ++ + + PD+ + + + + +V + ++G+
Sbjct: 66 ---------FYPPSDMLSLTKFQIYMESLGNLSPDQLSQYMARVGKKVTAEQLKGM---- 112
Query: 608 WFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPG 667
D A F+++HG GEDG++Q LLE +PY+G G
Sbjct: 113 ----IDFA-----------------------FLSLHGPCGEDGSIQGLLEWYKIPYSGSG 145
Query: 668 VMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTL 726
++ + +DK+ + G L + + KT D ++ EL L L
Sbjct: 146 ILGTAVGIDKIVQK---KWMQQAGFLVTPYSIIDRNTWQKTTNKDALFEELIHTLGL-PL 201
Query: 727 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLL----------RIPPNSFSRAHGMIEM 776
+K R G S GV + +D + KA+ + P ++ +I++
Sbjct: 202 VIKSPRQGSSIGV-NIVYEKDFEAFTKAIHASFFIEQVTAKQWQELSPQ--AKEQWLIKL 258
Query: 777 PN------PPPEI---LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV--------E 819
+ P EI +I+ P + + S D + +G + E
Sbjct: 259 VDLRSGIGLPVEINGHIIYHPEALLNFVDNYFNSCESPLDLVSLQGEESVLVESFITGRE 318
Query: 820 ITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP---PPASIMSTEALDK 876
+ V+ + G+ +P + + K+ G TP P A + + + +
Sbjct: 319 FSCIVLQEAGNEPVALPPTEMLKGDLHFDYRAKYLPGLVRKQTPMTLPLAQLNTIK--EA 376
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
C Q E +L + ++RID + DN + + + NT GM PS+ L HQA
Sbjct: 377 CVQLFE----SLNFQVYARIDGIFSSDNS-IYLNDPNTTAGMNPSSFLFHQA 423
>gi|85858831|ref|YP_461033.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
gi|85721922|gb|ABC76865.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
Length = 355
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 185/439 (42%), Gaps = 127/439 (28%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVW--LNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
V +I G +SE++VSL SG N++ ++ + ++ I + D D+
Sbjct: 11 VGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPI------------------FMDSDA 52
Query: 552 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 611
+ +W +P L++R+ C +E D L + V E LK T
Sbjct: 53 A---LWEIPLKLLMRN--------CTRDVEED-------LAEEAVRVPYEELK-----TR 89
Query: 612 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
D+ VF+A+HG GEDG +Q LLE +PYTG GV+AS
Sbjct: 90 VDL-----------------------VFLALHGKYGEDGCMQGLLELLKIPYTGSGVLAS 126
Query: 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
MDK+A+ L ++ + + + V K + E + VKP+
Sbjct: 127 ALGMDKLASRRVL----EINGIDVPRTVPVFRGAWKPEEENALFERIEQEIGFPCVVKPS 182
Query: 732 RDGCSTGVARLCCAEDLTVYVKA--LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
R+GCSTGV ++ L+ + L +C + E F
Sbjct: 183 REGCSTGVKKVMSRAGLSDALNGAFLWDC------------------------TALVEEF 218
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 849
++ E +T G++G +L PS T+ S D+LSL
Sbjct: 219 IDGME-------------------------VTCGILGG-NPPTALTPSETIATS-DVLSL 251
Query: 850 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 909
E+KF G G N TP + + E L K ++ AL L+G++RID FV G VL+
Sbjct: 252 EDKFLYGQGENKTP---ARLPGETLMKIQEVAVKAFEALDLKGYARIDMFVT-SAGRVLV 307
Query: 910 IEVNTVPGMTPSTVLIHQA 928
+E NT PGMTPSTVL HQA
Sbjct: 308 LEPNTQPGMTPSTVLFHQA 326
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 109/387 (28%), Positives = 167/387 (43%), Gaps = 56/387 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I G S+E+ +SL S R++ I ++D + + I + N
Sbjct: 9 LRVGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCTR 68
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D + E LA+ ++ E L VD+VF +HG++GEDG +Q +LE +P+ G+G
Sbjct: 69 DVE---EDLAEE--AVRVPYEELKTRVDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGV 123
Query: 198 RACRQAFDKYDASLEMSKQGF---ITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
A DK + + G TVP F +G+ E E + + +++ G V
Sbjct: 124 LASALGMDKLASRRVLEINGIDVPRTVPVF--RGAWKPEEENA---LFERIEQEIGFPCV 178
Query: 254 VKPTRAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
VKP+R G S GV G+ D+L G L D +VE F++ G E T +L
Sbjct: 179 VKPSREGCSTGVKKVMSRAGLSDAL---NGAFL--WDCTALVEEFID-GMEVTCGILGGN 232
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
P L P+E + DV + F Y Q TP R P + I
Sbjct: 233 P-----PTALTPSET----IATSDVLSLEDKFLY-------GQGENKTPARLPGETLMKI 276
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A F+ L L +ARID + T G +L + N GM +
Sbjct: 277 QEVAVKAFEALDLKGYARIDMFV-----------------TSAGRVLVLEPNTQPGMTPS 319
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACS 457
+ LF QA+ G + + ++ I+ A S
Sbjct: 320 TVLFHQAAASGITQTGLVDRILEAALS 346
>gi|406917221|gb|EKD56060.1| hypothetical protein ACD_58C00306G0009 [uncultured bacterium]
Length = 360
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 176/379 (46%), Gaps = 50/379 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG+I GG S E +SL S R++ ++I YI R+ + + + NT +
Sbjct: 6 KVGIIFGGLSLESEVSLTSGRNLYNNINKTLFDPIAIYISRDEQFWQLPETLIIRNTTKE 65
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ +LE+ A L E+ E LA+ +DI F HG+FG+DG +Q ++E +VP+ G+G
Sbjct: 66 IEERLEAKA----ILIEY-EKLASIIDIAFLVTHGKFGDDGSLQGLMELLHVPYTGSGVL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFL---LQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
+ DK + I P +L + + N+ + N + P +V K
Sbjct: 121 SAALGMDKDLQRKLIGLDKDINQPEYLTVNIIDWQANQDRVINSIEQKFVYP----LVSK 176
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P R GS+IGV + + K K + D+++++E +L+ G EF+ +V+ G D
Sbjct: 177 PAREGSTIGVETINSKDEFINKVKKSFI--YDNKIIIEPYLK-GREFSCMVV----GGD- 228
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINSIREG 373
P LLPTE + IF Y KYLP ++++ TP +I I+
Sbjct: 229 KPRALLPTE----------TIHSNEIFTYDEKYLPGASEKI---TPMDIDENIIKEIQRQ 275
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
+ + LG D+ARIDG+ L ++ V + + +G+ +S+
Sbjct: 276 SLACYIILGCSDYARIDGFVLDNNKVVITDPNSAAS---------------TGLGPSSWT 320
Query: 434 FQQASKVGFSHSNILRTII 452
+ QA K G+S + + +I
Sbjct: 321 WHQAVKAGYSVKDFITELI 339
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 114/452 (25%), Positives = 180/452 (39%), Gaps = 147/452 (32%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+V +IFGG + E +VSL SG N++ N+ N P + S D
Sbjct: 6 KVGIIFGGLSLESEVSLTSGRNLYNNI---NKTLFDPIAIYISRD--------------- 47
Query: 553 SRVVWSLPYSLVLRHTTEEV---LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
W LP +L++R+TT+E+ L A IE ++ A
Sbjct: 48 -EQFWQLPETLIIRNTTKEIEERLEAKAILIEYEKLA----------------------- 83
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
+ DIA F+ HG G+DG+LQ L+E VPYTG GV+
Sbjct: 84 SIIDIA-----------------------FLVTHGKFGDDGSLQGLMELLHVPYTGSGVL 120
Query: 670 ASKTCMDKVATSLALNHLADL--GVLTINKDVRRKEDLLKTPIVDIWH----ELTSKLQC 723
++ MDK DL ++ ++KD+ + E L I+D W + + ++
Sbjct: 121 SAALGMDK-----------DLQRKLIGLDKDINQPE-YLTVNIID-WQANQDRVINSIEQ 167
Query: 724 K---TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
K L KPAR+G + GV + ++ VK SF +
Sbjct: 168 KFVYPLVSKPAREGSTIGVETINSKDEFINKVK-----------KSFIYDNK-------- 208
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
+I EP+++ E FS + R +L+P+ T+
Sbjct: 209 ---IIIEPYLKGRE--FSCMVVGGDKPR------------------------ALLPTETI 239
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAF 899
S +I + +EK+ G +TP E + K QR L L ++RID F
Sbjct: 240 -HSNEIFTYDEKYLPGASEKITPMDID----ENIIKEIQRQSLACYIILGCSDYARIDGF 294
Query: 900 VNVDNGEVLIIEVNTVP--GMTPSTVLIHQAL 929
V +DN +V+I + N+ G+ PS+ HQA+
Sbjct: 295 V-LDNNKVVITDPNSAASTGLGPSSWTWHQAV 325
>gi|420152488|ref|ZP_14659532.1| D-ala D-ala ligase N-terminal-like domain protein [Actinomyces
massiliensis F0489]
gi|394764613|gb|EJF46352.1| D-ala D-ala ligase N-terminal-like domain protein [Actinomyces
massiliensis F0489]
Length = 331
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 164/369 (44%), Gaps = 81/369 (21%)
Query: 78 LRVGLICGGPSAERGISLNSAR---SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LR+ ++ GG S ER +SL S SVL H+ G +LV
Sbjct: 22 LRIAILAGGLSHERDVSLRSGHRVASVLKHL-GHTVLV---------------------- 58
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D D + + + FG D+V+P +HG GEDGG+Q VL +P+VG
Sbjct: 59 --LDVDARTIASLRAFGP------------DVVWPLVHGSHGEDGGLQNVLIALGMPYVG 104
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE--SELSNWFVTNKLDPNSGKV 252
T S C++A K A + ++G T S L + ++ ++ + V++ L V
Sbjct: 105 THSDGCQRASFKPTAKATVRRRGVATPDSVTLPKAYFSQLGAQEALGLVSSHL---GLPV 161
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
VVKP + GS +GV++A+ D L+ A + D+R ++E ++ G+E V+DVG G
Sbjct: 162 VVKPNQGGSGLGVSLAHDA-DELRNAM-VACFAYDERALIEQYVP-GTEVAISVVDVGEG 218
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
P L P EV V E D +++ +Y P + Y P R + ++E
Sbjct: 219 ----PKALPPVEV---------VSEGD--YDFDARYNPGRS-EYFVPARLSPTLFEQVQE 262
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A L+ Q LGL + +R D E GT F D+N++ GM +TS
Sbjct: 263 TAVLVHQTLGLGNLSRTDLIL-----------------DENGTPWFIDVNVVPGMTETSL 305
Query: 433 LFQQASKVG 441
L A G
Sbjct: 306 LPLAAKAAG 314
>gi|449967216|ref|ZP_21812654.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 15VF2]
gi|449169198|gb|EMB71983.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 15VF2]
Length = 349
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 173/394 (43%), Gaps = 64/394 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P + D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPLETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKIPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + E++L+ V KL V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ENKLAE--VEEKL---IYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ FQ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFQTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S+++ ++ A F S+
Sbjct: 314 MYPLLWENMGLSYSDLIEELVSLAKEMFDKRESH 347
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 113/287 (39%), Gaps = 60/287 (20%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKIPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + P+ + E+ KL + VKPA G S G+++ AE+ T
Sbjct: 144 VAYVALIEGE------PLENKLAEVEEKL-IYPVFVKPANMGSSVGISK---AENRTDLK 193
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+A+ L K R++ +
Sbjct: 194 QAIALAL--------------------------------------------KYDSRVLIE 209
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ E K+ I + P +
Sbjct: 210 QGVDAREIEVGILGNT-DVKTTLPGEIVKDVA-FYDYEAKYIDNK-ITMAIPAE--IDPV 264
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
++K + L G SR D F+ D G+V + E+NT+PG T
Sbjct: 265 IVEKMRDYAATAFQTLGCCGLSRCDFFLTED-GKVYLNELNTMPGFT 310
>gi|336322288|ref|YP_004602256.1| D-alanine--D-alanine ligase [[Cellvibrio] gilvus ATCC 13127]
gi|336105869|gb|AEI13688.1| D-alanine--D-alanine ligase [[Cellvibrio] gilvus ATCC 13127]
Length = 342
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 168/393 (42%), Gaps = 81/393 (20%)
Query: 73 RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY 132
R GR RV L+ GG S ER +S+ S R V + ++ + V + +D +L
Sbjct: 20 RLGRAPRVALLAGGLSHERDVSMRSGRRVAEALRSAGVEVSVHDVDADL----------- 68
Query: 133 SNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPF 192
PA D + D+V+P +HG GEDG ++++++ +
Sbjct: 69 --LPALADLQ---------------------PDLVWPVLHGASGEDGSVRDIVQLSGLRL 105
Query: 193 VGTGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDP 247
+GTG RA R A+ K A ++ G F+T+P L + E+ S + V P
Sbjct: 106 LGTGPRASRVAWSKPIAKTVAARAGLETPEFVTLPQTLFR--ELGASAVLRMIVARLGLP 163
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
VVVKP+R GS++GV++ D L +A + D +VE + G+E A V+
Sbjct: 164 ----VVVKPSRGGSALGVSLVREA-DDLPRAM-VECFSYSDTALVERAVT-GTELAASVV 216
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
D+G G PV L P E+ D ++Y +Y P +V Y P R +
Sbjct: 217 DLGEG----PVALPPVEI-----------VADGPYDYDARYNP-GRVEYFAPARLRPEQV 260
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++ A + LGL +R D E G + F ++N+ GM
Sbjct: 261 EAVGAAAVTAHRSLGLMGLSRTDLIL-----------------DEDGVVHFLEVNVAPGM 303
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460
+TS Q A G++ + R+++ + + P
Sbjct: 304 TETSLFPQAAEAAGYNLGTLYRSLVAASLAAEP 336
>gi|449981547|ref|ZP_21817832.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 5SM3]
gi|449175695|gb|EMB78088.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 5SM3]
Length = 349
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 176/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER IS+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDISVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDK--ITTKQVLESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S+++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSDLIEELVSLAKEMFDKRESH 347
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|338813773|ref|ZP_08625862.1| D-alanyl-alanine synthetase A [Acetonema longum DSM 6540]
gi|337274265|gb|EGO62813.1| D-alanyl-alanine synthetase A [Acetonema longum DSM 6540]
Length = 369
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 170/403 (42%), Gaps = 49/403 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ +RVG+I GG SAE +SL SA++VLD + + ID++ +QV +
Sbjct: 3 KKIRVGIIFGGKSAEHEVSLQSAKNVLDAMNKEKYEAVLIGIDKSGRWQVNEESQVLLHA 62
Query: 136 PADFDFKLESLAQGFGSL-SEFAEHLA--------ANVDIVFPTIHGRFGEDGGIQEVLE 186
+L QG + E +E L +D+ FP +HG FGEDG +Q +L+
Sbjct: 63 DNPKLIQLNKSNQGVALIPGERSEQLLNLTSHKSLGQIDVAFPILHGPFGEDGTVQGLLK 122
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL-LQGSEVNESELSNWFVTNKL 245
N+PFVG G DK D + + I + ++ + V + E S V KL
Sbjct: 123 LANIPFVGAGVLGSAAGMDK-DVMKRLLRDAGIPIAKYVAVDYRTVKDPEASFEKVEEKL 181
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ A + KA LE D +V+VE F++ G E
Sbjct: 182 ---GLPLFVKPANLGSSVGVSKA-STKEEFDKAVAYALE-YDSKVIVEEFIK-GQEIECA 235
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL + PV LP E + K ++Y KY+ P + P
Sbjct: 236 VLG-----NSDPVASLPGE----------ILPKRDFYSYEAKYIDEDGAGLEIPAKLPSD 280
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
++ +++ A F+ + R+D FL + G ++ +IN I
Sbjct: 281 IVTQVQQMAIRTFKAICCEGMGRVD-CFLKDN----------------GELIVNEINTIP 323
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSV 468
G + S + G S++ ++ +I A RF Y +V
Sbjct: 324 GFTRISMYPKLWEISGISYTELIDRLIELALERFEREQKYKTV 366
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 114/459 (24%), Positives = 174/459 (37%), Gaps = 108/459 (23%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S NV L A N + L+ ID S N +S
Sbjct: 7 VGIIFGGKSAEHEVSLQSAKNV---LDAMNKEKYEAVLIG--IDKSGRWQVN---EESQV 58
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + + V A Q++N L H D
Sbjct: 59 LLHADNPKLIQLNKSNQGV------------ALIPGERSEQLLN-----LTSHKSLGQID 101
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+A F +HG GEDGT+Q LL+ +P+ G GV+ S
Sbjct: 102 VA-----------------------FPILHGPFGEDGTVQGLLKLANIPFVGAGVLGSAA 138
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733
MDK + L D G+ I K V +K P + ++ KL L VKPA
Sbjct: 139 GMDK---DVMKRLLRDAGI-PIAKYVAVDYRTVKDPEAS-FEKVEEKLGL-PLFVKPANL 192
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S GV++ E+ V E ++ I E F+
Sbjct: 193 GSSVGVSKASTKEEFDKAVAYALEYDSKV----------------------IVEEFI--- 227
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 853
KG EI V+G + SL + K D S E K+
Sbjct: 228 ------------------KGQ----EIECAVLGNSDPVASLPGEILPKR--DFYSYEAKY 263
Query: 854 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
G L P + + ++ + + +Q A+ EG R+D F+ DNGE+++ E+N
Sbjct: 264 IDEDGAGLEIP--AKLPSDIVTQVQQMAIRTFKAICCEGMGRVDCFLK-DNGELIVNEIN 320
Query: 914 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
T+PG T + ++ L E + + ++++L ERF
Sbjct: 321 TIPGFT--RISMYPKLWEISGISYTELIDRLIELALERF 357
>gi|290580905|ref|YP_003485297.1| D-alanine-D-alanine ligase [Streptococcus mutans NN2025]
gi|397649319|ref|YP_006489846.1| D-alanine--D-alanine ligase [Streptococcus mutans GS-5]
gi|449929477|ref|ZP_21801597.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 3SN1]
gi|449944623|ref|ZP_21806818.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 11A1]
gi|449995912|ref|ZP_21823253.1| putative D-alanine-D-alanine ligase [Streptococcus mutans A9]
gi|450036207|ref|ZP_21835398.1| putative D-alanine-D-alanine ligase [Streptococcus mutans M21]
gi|450111199|ref|ZP_21862564.1| putative D-alanine-D-alanine ligase [Streptococcus mutans SM6]
gi|254997804|dbj|BAH88405.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025]
gi|392602888|gb|AFM81052.1| D-alanine-D-alanine ligase [Streptococcus mutans GS-5]
gi|449148416|gb|EMB52288.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 11A1]
gi|449164471|gb|EMB67529.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 3SN1]
gi|449183976|gb|EMB85941.1| putative D-alanine-D-alanine ligase [Streptococcus mutans A9]
gi|449194389|gb|EMB95746.1| putative D-alanine-D-alanine ligase [Streptococcus mutans M21]
gi|449224075|gb|EMC23728.1| putative D-alanine-D-alanine ligase [Streptococcus mutans SM6]
Length = 349
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 176/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDK--ITTKQVLESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S+++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSDLIEELVSLAKEMFDKRESH 347
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 60/287 (20%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + P+ E+ KL + VKPA G S G+++ AE+ T
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISK---AENRTDLK 193
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+A+ L K R++ +
Sbjct: 194 QAIALAL--------------------------------------------KYDSRVLIE 209
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ E K+ I + P +
Sbjct: 210 QGVDAREIEVGILGNT-DVKTTLPGEIVKDVA-FYDYEAKYIDNK-ITMAIPAE--IDPV 264
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
++K + L G SR D F+ D G+V + E+NT+PG T
Sbjct: 265 IVEKMRDYAATAFRTLGCCGLSRCDFFLTED-GKVYLNELNTMPGFT 310
>gi|450106706|ref|ZP_21860640.1| D-alanyl-alanine synthetase A [Streptococcus mutans SF14]
gi|449223020|gb|EMC22728.1| D-alanyl-alanine synthetase A [Streptococcus mutans SF14]
Length = 349
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 174/394 (44%), Gaps = 64/394 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + ES+L+ V KL + V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ESKLAE--VEEKL---TYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S ++ ++ A F S+
Sbjct: 314 MYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + L++ + ++ +LT + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGEP--LESKLAEVEEKLTYP-----VFVKPANMGSSVGISKAENRTDL 192
>gi|450121978|ref|ZP_21866529.1| D-alanyl-alanine synthetase A [Streptococcus mutans ST6]
gi|449228448|gb|EMC27814.1| D-alanyl-alanine synthetase A [Streptococcus mutans ST6]
Length = 349
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 175/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + IVFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDICEEEAIVFPVLHGPMGEDGSIQGFLEVLKIPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDK--ITTKQVLESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +
Sbjct: 84 EEEAIVFPVLHGPMGEDGSIQGFLEVLKIPYVGTNILSSSVAMDKITTKQVLESATTIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|340358719|ref|ZP_08681227.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 448 str.
F0400]
gi|339885856|gb|EGQ75547.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 448 str.
F0400]
Length = 327
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 160/360 (44%), Gaps = 79/360 (21%)
Query: 78 LRVGLICGGPSAERGISLNSAR---SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LRV ++ GG S ER +SL S SVL H+ G +L+
Sbjct: 18 LRVAILAGGLSHERDVSLRSGHRVASVLKHL-GHTVLI---------------------- 54
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
L+ A+ GSL FA D V+P +HGR GEDGG+Q VL ++P+VG
Sbjct: 55 --------LDVDARTIGSLKAFAP------DAVWPLLHGRHGEDGGLQNVLIALDMPYVG 100
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
T S C++A K A + G +T S L S S+L + + G VV
Sbjct: 101 THSDGCQRASFKSTAKATVRAGGVVTPDSVTLPKSYF--SQLGAQETLGVVASHLGLPVV 158
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP + GS +GV++A+ D L+ A + D+R ++E ++ G+E V+D G+G
Sbjct: 159 VKPNQGGSGLGVSLAHNA-DELRNAM-VACFAYDERALIERYVP-GTEVAVSVVDTGNG- 214
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P L P EV + Q +++ +Y P + Y P R ++ ++
Sbjct: 215 ---PRALPPVEVVSEGQ-----------YDFDARYNPGRS-EYFVPARLDSELLTRVQNT 259
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A ++ + LGL + +R D E GT F D+N++ GM +TS L
Sbjct: 260 AVVVHRTLGLGNTSRTDLIL-----------------DEAGTPWFIDVNVVPGMTETSLL 302
>gi|373465696|ref|ZP_09557148.1| D-ala D-ala ligase protein [Lactobacillus kisonensis F0435]
gi|371759549|gb|EHO48266.1| D-ala D-ala ligase protein [Lactobacillus kisonensis F0435]
Length = 378
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 108/407 (26%), Positives = 175/407 (42%), Gaps = 68/407 (16%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI- 126
MAK + +GLI GG S+E +S SA ++ D + D V + + ++ Y +
Sbjct: 1 MAKNKKQ----HIGLIFGGNSSEHDVSKRSAHNIFDAMDKDKYQVSLFLMTKS--GYILG 54
Query: 127 --SSAQVYSNTPADFDFK--LESLAQG--FGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
SA+V++ P D K L+ L Q + +E AN+D+ FP IHG GEDG
Sbjct: 55 NKDSARVFNGEPEDEVAKEALDRLDQKNPLAPIINLSE--VANIDVFFPIIHGNLGEDGT 112
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +L P+VGTG +FDK D + ++ + +T + EV S F
Sbjct: 113 IQGLLRLLQKPYVGTGVLGSAMSFDK-DITKKILQLAGVTTTRY-----EVVTPMTSEQF 166
Query: 241 VTNKLDPNSGKVV-VKPTRAGSSIGV-------TVAYGVIDSLKKAKGIILEGIDDRVVV 292
+L G+ + VKP GSS+G+ G+ D+ + D +V+V
Sbjct: 167 TYQQLSDELGETLFVKPANQGSSVGIHKVENEEDYREGIRDAFR---------YDSKVLV 217
Query: 293 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
E +EG E VL + HP+V ++V G++ V + DA + Y K++
Sbjct: 218 EEAIEGPEELEISVLG-----NHHPIV---SKV-----GAIKVPKSDAFYTYDNKFVDAS 264
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
V + P P + I + +Q LGL ARID Y ++
Sbjct: 265 HVEFDVPVDIPASLSEEITKMGLATYQALGLKGMARID-----------------YLVSQ 307
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G +++N + G S Q + G S++ ++ +I A +
Sbjct: 308 DGKPYVSEVNTLPGFTNISLYPQLFAASGISYTELIDRLIQLAIEEY 354
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 127/311 (40%), Gaps = 70/311 (22%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 674
D L ++ + I L++ VF + HG +GEDGT+Q LL PY G GV+ S
Sbjct: 76 DRLDQKNPLAPIINLSEVANIDVFFPIIHGNLGEDGTIQGLLRLLQKPYVGTGVLGSAMS 135
Query: 675 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD---IWHELTSKLQCKTLCVKPA 731
DK T L LA GV T +V TP+ + +L+ +L +TL VKPA
Sbjct: 136 FDKDITKKIL-QLA--GVTTTRYEVV-------TPMTSEQFTYQQLSDEL-GETLFVKPA 184
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S G+ ++ ED Y + + + +S IE P
Sbjct: 185 NQGSSVGIHKVENEED---YREGIRDAFRY---DSKVLVEEAIEGPE------------- 225
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
E+ + V+G + S + ++ V +S + +
Sbjct: 226 ---------------------------ELEISVLGNHHPIVSKVGAIKVPKSDAFYTYDN 258
Query: 852 KFQGGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
KF + + P PAS+ +E + K AL L+G +RID V+ D G+
Sbjct: 259 KFVDASHVEFDVPVDIPASL--SEEITKMGLA---TYQALGLKGMARIDYLVSQD-GKPY 312
Query: 909 IIEVNTVPGMT 919
+ EVNT+PG T
Sbjct: 313 VSEVNTLPGFT 323
>gi|449892423|ref|ZP_21788445.1| D-alanyl-alanine synthetase A [Streptococcus mutans SF12]
gi|449256161|gb|EMC53994.1| D-alanyl-alanine synthetase A [Streptococcus mutans SF12]
Length = 349
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 175/401 (43%), Gaps = 70/401 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHL 472
+G S+S ++ ++ A F N SHL
Sbjct: 314 MYPLLWENMGLSYSVLIEELVSLAKEMF------NKRESHL 348
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|449949437|ref|ZP_21807996.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 11SSST2]
gi|449167586|gb|EMB70458.1| putative D-alanine-D-alanine ligase [Streptococcus mutans 11SSST2]
Length = 349
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 173/394 (43%), Gaps = 64/394 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P + D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPLETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAKNRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S+++ ++ A F S+
Sbjct: 314 MYPLLWENMGLSYSDLIEELVSLAKEMFDKRESH 347
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAKNRTDL 192
>gi|449970832|ref|ZP_21814052.1| D-alanyl-alanine synthetase A [Streptococcus mutans 2VS1]
gi|450030268|ref|ZP_21833127.1| D-alanyl-alanine synthetase A [Streptococcus mutans G123]
gi|450059082|ref|ZP_21843343.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML4]
gi|450065967|ref|ZP_21845719.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML9]
gi|450166843|ref|ZP_21882452.1| D-alanyl-alanine synthetase A [Streptococcus mutans B]
gi|449172891|gb|EMB75498.1| D-alanyl-alanine synthetase A [Streptococcus mutans 2VS1]
gi|449193054|gb|EMB94451.1| D-alanyl-alanine synthetase A [Streptococcus mutans G123]
gi|449203285|gb|EMC04152.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML4]
gi|449209373|gb|EMC09899.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML9]
gi|449239224|gb|EMC37952.1| D-alanyl-alanine synthetase A [Streptococcus mutans B]
Length = 349
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 175/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER IS+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDISVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDK--ITTKQVLESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|450006272|ref|ZP_21827139.1| D-alanyl-alanine synthetase A [Streptococcus mutans NMT4863]
gi|449187715|gb|EMB89476.1| D-alanyl-alanine synthetase A [Streptococcus mutans NMT4863]
Length = 349
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 173/394 (43%), Gaps = 64/394 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAKNRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S ++ ++ A F S+
Sbjct: 314 MYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAKNRTDL 192
>gi|449881391|ref|ZP_21784432.1| D-alanyl-alanine synthetase A [Streptococcus mutans SA38]
gi|449925743|ref|ZP_21800391.1| D-alanyl-alanine synthetase A [Streptococcus mutans 4SM1]
gi|450000450|ref|ZP_21825140.1| D-alanyl-alanine synthetase A [Streptococcus mutans N29]
gi|450047207|ref|ZP_21839341.1| D-alanyl-alanine synthetase A [Streptococcus mutans N34]
gi|450053284|ref|ZP_21841552.1| D-alanyl-alanine synthetase A [Streptococcus mutans NFSM1]
gi|450071337|ref|ZP_21848094.1| D-alanyl-alanine synthetase A [Streptococcus mutans M2A]
gi|450078347|ref|ZP_21850947.1| D-alanyl-alanine synthetase A [Streptococcus mutans N3209]
gi|450093827|ref|ZP_21856774.1| D-alanyl-alanine synthetase A [Streptococcus mutans W6]
gi|450150258|ref|ZP_21876517.1| D-alanyl-alanine synthetase A [Streptococcus mutans 14D]
gi|450161840|ref|ZP_21880673.1| D-alanyl-alanine synthetase A [Streptococcus mutans 66-2A]
gi|450182736|ref|ZP_21888439.1| D-alanyl-alanine synthetase A [Streptococcus mutans 24]
gi|449161275|gb|EMB64478.1| D-alanyl-alanine synthetase A [Streptococcus mutans 4SM1]
gi|449185715|gb|EMB87588.1| D-alanyl-alanine synthetase A [Streptococcus mutans N29]
gi|449197850|gb|EMB98995.1| D-alanyl-alanine synthetase A [Streptococcus mutans N34]
gi|449199159|gb|EMC00239.1| D-alanyl-alanine synthetase A [Streptococcus mutans NFSM1]
gi|449210148|gb|EMC10628.1| D-alanyl-alanine synthetase A [Streptococcus mutans N3209]
gi|449212504|gb|EMC12868.1| D-alanyl-alanine synthetase A [Streptococcus mutans M2A]
gi|449216880|gb|EMC16963.1| D-alanyl-alanine synthetase A [Streptococcus mutans W6]
gi|449233774|gb|EMC32824.1| D-alanyl-alanine synthetase A [Streptococcus mutans 14D]
gi|449238123|gb|EMC36905.1| D-alanyl-alanine synthetase A [Streptococcus mutans 66-2A]
gi|449244327|gb|EMC42707.1| D-alanyl-alanine synthetase A [Streptococcus mutans 24]
gi|449251393|gb|EMC49406.1| D-alanyl-alanine synthetase A [Streptococcus mutans SA38]
Length = 349
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 173/394 (43%), Gaps = 64/394 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S ++ ++ A F S+
Sbjct: 314 MYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|449911889|ref|ZP_21795248.1| D-alanyl-alanine synthetase A [Streptococcus mutans OMZ175]
gi|450125255|ref|ZP_21867579.1| D-alanyl-alanine synthetase A [Streptococcus mutans U2A]
gi|449232677|gb|EMC31779.1| D-alanyl-alanine synthetase A [Streptococcus mutans U2A]
gi|449257772|gb|EMC55395.1| D-alanyl-alanine synthetase A [Streptococcus mutans OMZ175]
Length = 349
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 173/394 (43%), Gaps = 64/394 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S ++ ++ A F S+
Sbjct: 314 MYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|450133883|ref|ZP_21870840.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML8]
gi|449150313|gb|EMB54082.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML8]
Length = 349
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 175/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAIHYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDK--ITTKQVLESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|387786567|ref|YP_006251663.1| D-alanyl-alanine synthetase A [Streptococcus mutans LJ23]
gi|449866155|ref|ZP_21779393.1| D-alanyl-alanine synthetase A [Streptococcus mutans U2B]
gi|449873512|ref|ZP_21781756.1| D-alanyl-alanine synthetase A [Streptococcus mutans 8ID3]
gi|449876407|ref|ZP_21782765.1| D-alanyl-alanine synthetase A [Streptococcus mutans S1B]
gi|449888045|ref|ZP_21787116.1| D-alanyl-alanine synthetase A [Streptococcus mutans SA41]
gi|449905692|ref|ZP_21793163.1| D-alanyl-alanine synthetase A [Streptococcus mutans M230]
gi|449916981|ref|ZP_21797112.1| D-alanyl-alanine synthetase A [Streptococcus mutans 15JP3]
gi|449922247|ref|ZP_21799100.1| D-alanyl-alanine synthetase A [Streptococcus mutans 1SM1]
gi|449936995|ref|ZP_21804316.1| D-alanyl-alanine synthetase A [Streptococcus mutans 2ST1]
gi|449974175|ref|ZP_21815139.1| D-alanyl-alanine synthetase A [Streptococcus mutans 11VS1]
gi|449986384|ref|ZP_21820143.1| D-alanyl-alanine synthetase A [Streptococcus mutans NFSM2]
gi|450012470|ref|ZP_21829658.1| D-alanyl-alanine synthetase A [Streptococcus mutans A19]
gi|450023965|ref|ZP_21830959.1| D-alanyl-alanine synthetase A [Streptococcus mutans U138]
gi|450042040|ref|ZP_21837595.1| D-alanyl-alanine synthetase A [Streptococcus mutans T4]
gi|450082819|ref|ZP_21852557.1| D-alanyl-alanine synthetase A [Streptococcus mutans N66]
gi|450088265|ref|ZP_21854720.1| D-alanyl-alanine synthetase A [Streptococcus mutans NV1996]
gi|450101088|ref|ZP_21859013.1| D-alanyl-alanine synthetase A [Streptococcus mutans SF1]
gi|450117553|ref|ZP_21865024.1| D-alanyl-alanine synthetase A [Streptococcus mutans ST1]
gi|450156151|ref|ZP_21878631.1| D-alanyl-alanine synthetase A [Streptococcus mutans 21]
gi|450172121|ref|ZP_21884398.1| D-alanyl-alanine synthetase A [Streptococcus mutans SM4]
gi|379132968|dbj|BAL69720.1| D-alanyl-alanine synthetase A [Streptococcus mutans LJ23]
gi|449153961|gb|EMB57587.1| D-alanyl-alanine synthetase A [Streptococcus mutans 8ID3]
gi|449154643|gb|EMB58209.1| D-alanyl-alanine synthetase A [Streptococcus mutans 15JP3]
gi|449156299|gb|EMB59772.1| D-alanyl-alanine synthetase A [Streptococcus mutans 1SM1]
gi|449164878|gb|EMB67913.1| D-alanyl-alanine synthetase A [Streptococcus mutans 2ST1]
gi|449178071|gb|EMB80351.1| D-alanyl-alanine synthetase A [Streptococcus mutans NFSM2]
gi|449178655|gb|EMB80904.1| D-alanyl-alanine synthetase A [Streptococcus mutans 11VS1]
gi|449188367|gb|EMB90082.1| D-alanyl-alanine synthetase A [Streptococcus mutans A19]
gi|449192633|gb|EMB94046.1| D-alanyl-alanine synthetase A [Streptococcus mutans U138]
gi|449197242|gb|EMB98437.1| D-alanyl-alanine synthetase A [Streptococcus mutans T4]
gi|449214150|gb|EMC14455.1| D-alanyl-alanine synthetase A [Streptococcus mutans N66]
gi|449216731|gb|EMC16826.1| D-alanyl-alanine synthetase A [Streptococcus mutans NV1996]
gi|449220134|gb|EMC20042.1| D-alanyl-alanine synthetase A [Streptococcus mutans SF1]
gi|449226125|gb|EMC25685.1| D-alanyl-alanine synthetase A [Streptococcus mutans ST1]
gi|449236255|gb|EMC35181.1| D-alanyl-alanine synthetase A [Streptococcus mutans 21]
gi|449243125|gb|EMC41586.1| D-alanyl-alanine synthetase A [Streptococcus mutans SM4]
gi|449251839|gb|EMC49839.1| D-alanyl-alanine synthetase A [Streptococcus mutans SA41]
gi|449252462|gb|EMC50441.1| D-alanyl-alanine synthetase A [Streptococcus mutans S1B]
gi|449257952|gb|EMC55559.1| D-alanyl-alanine synthetase A [Streptococcus mutans M230]
gi|449263857|gb|EMC61214.1| D-alanyl-alanine synthetase A [Streptococcus mutans U2B]
Length = 349
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 175/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDK--ITTKQVLESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|365174674|ref|ZP_09362114.1| D-alanine-D-alanine ligase [Synergistes sp. 3_1_syn1]
gi|363614471|gb|EHL65965.1| D-alanine-D-alanine ligase [Synergistes sp. 3_1_syn1]
Length = 314
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 159/384 (41%), Gaps = 90/384 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++V ++CGG S ER +SLNS +V +
Sbjct: 1 MKVVILCGGVSPEREVSLNSGAAVAKAMA------------------------------- 29
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAA-NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
DF E+ S+SEF ++ D VF +HG +GEDG IQ VLE + +P+ G+G
Sbjct: 30 --DFGYEAELCDITSISEFVKNWPGYKADGVFIALHGGWGEDGRIQAVLEAFGIPYTGSG 87
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
AC + DK A L + G + VP + + ++ +L+ ++ N GK++VKP
Sbjct: 88 PEACMLSMDKAAAKLLFANAG-VPVPRGFIATRDDDKRKLAGEYIQNH-----GKIIVKP 141
Query: 257 TRAGSSIGVTVA-----YGVIDSL---KKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
GS++GVT+ YG L +AK ++ E ID G E T V++
Sbjct: 142 NGGGSTVGVTIVSEIAEYGAALELAWQSEAKALVEEFID-----------GEEVTVPVME 190
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G + LP ++ ++ K ++Y+ KY + Y P + +
Sbjct: 191 TADG----KALALP---------AIHIKPKSGFYDYKNKYT-SGCTEYICPSDLSEEINS 236
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+ + A + ++ LG ++R+D P G + ++N GM
Sbjct: 237 RLADAAVIAYRALGCRSYSRVDFRVTPE-----------------GALYALEVNTAPGMT 279
Query: 429 QTSFLFQQASKVGFSHSNILRTII 452
TS + + A GFS L ++
Sbjct: 280 ATSLVPKSAKSSGFSFGEFLDEVV 303
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 132/320 (41%), Gaps = 61/320 (19%)
Query: 612 FDIADELPMRHSINEWIKLAKENQAT-VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
F EL SI+E++K +A VFIA+HGG GEDG +Q++LEA G+PYTG G A
Sbjct: 31 FGYEAELCDITSISEFVKNWPGYKADGVFIALHGGWGEDGRIQAVLEAFGIPYTGSGPEA 90
Query: 671 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
MDK A L A+ GV + ++D K + + + K + VKP
Sbjct: 91 CMLSMDKAAAKLL---FANAGVPVPRGFIATRDD-DKRKLAGEYIQNHGK-----IIVKP 141
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790
G + GV + ++ Y ALE + S ++A + E F+
Sbjct: 142 NGGGSTVGVTIV---SEIAEYGAALE-----LAWQSEAKA--------------LVEEFI 179
Query: 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 850
+ + E+TV V+ +P++ +K +
Sbjct: 180 DGE-------------------------EVTVPVMETADGKALALPAIHIKPKSGFYDYK 214
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K+ G + P S +S E + + AL +SR+D F G + +
Sbjct: 215 NKYTSGCTEYICP---SDLSEEINSRLADAAVIAYRALGCRSYSRVD-FRVTPEGALYAL 270
Query: 911 EVNTVPGMTPSTVLIHQALS 930
EVNT PGMT ++++ A S
Sbjct: 271 EVNTAPGMTATSLVPKSAKS 290
>gi|24379077|ref|NP_721032.1| D-alanyl-alanine synthetase A [Streptococcus mutans UA159]
gi|26006956|sp|P95803.2|DDL_STRMU RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|24376976|gb|AAN58338.1|AE014904_1 putative D-alanine-D-alanine ligase [Streptococcus mutans UA159]
Length = 349
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 175/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTNQVL--ESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T+ L +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|450175362|ref|ZP_21885125.1| D-alanyl-alanine synthetase A [Streptococcus mutans SM1]
gi|449246951|gb|EMC45244.1| D-alanyl-alanine synthetase A [Streptococcus mutans SM1]
Length = 349
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 171/388 (44%), Gaps = 64/388 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+S ++ ++ A F
Sbjct: 314 MYPLLWENMGLSYSVLIEELVSLAKEMF 341
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|306991644|pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
Ligase (Ddl) From Streptococcus Mutans
gi|306991645|pdb|3K3P|B Chain B, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
Ligase (Ddl) From Streptococcus Mutans
Length = 383
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 175/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 42 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 97
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 98 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 157
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 158 VAMDKITTNQVL--ESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 209
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 210 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 249
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 250 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 302
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 303 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 345
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 346 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 381
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T+ L +
Sbjct: 118 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQ 177
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 178 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 226
>gi|450063924|ref|ZP_21845153.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML5]
gi|449204185|gb|EMC04999.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML5]
Length = 349
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 171/388 (44%), Gaps = 64/388 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+S ++ ++ A F
Sbjct: 314 MYPLLWENMGLSYSVLIEELVSLAKEMF 341
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|326202145|ref|ZP_08192015.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
gi|325987940|gb|EGD48766.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
Length = 349
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 168/389 (43%), Gaps = 55/389 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGD---DLLVRCYYIDRNLNAYA----ISSAQVY 132
+ +I GG S E +SLNSA SV+ HI D +L+ L + IS+ Y
Sbjct: 6 IAIIFGGCSPEYEVSLNSASSVIKHINNDLYNTILIGITKEGEWLRYFGDVDKISNNTWY 65
Query: 133 SNTPAD-FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
+ F GF SE + + VD FP +HGR GEDG +Q +L+ +P
Sbjct: 66 QEKGCNPVAFSQSPSIHGFYEFSEESSSITY-VDAAFPVLHGRNGEDGTVQGMLKLAGIP 124
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
FVG G + DK D + +++ + VP + + + + NK +
Sbjct: 125 FVGCGVLSSAMCMDK-DIAHRIAQSSGVCVPKSISADKAMLLKD-----ILNKAETLRYP 178
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
V VKP RAGSS G++ VID + K II D ++V+E ++G AI+
Sbjct: 179 VFVKPARAGSSFGIS---RVIDRAELEKAIINAFEYDSKIVIEENIDGFEVGCAIL---- 231
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY-LPTQQVAYHTPPRFPIVVINS 369
G D + V+ E+ELQ IF+Y KY L T ++ H P R V
Sbjct: 232 -GND-NLVIGEVDEIELQ----------SGIFDYNEKYTLKTSKI--HMPARIDTVTAER 277
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
I++ A +L+ L FAR+D + P G I+F ++N I G
Sbjct: 278 IKDTARILYNALCCTGFARVDMFLTPK-----------------GEIVFNEVNTIPGFTA 320
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSR 458
S VG S ++I+ +I A +
Sbjct: 321 HSRYPNMLRGVGLSFASIVERLIRMAIEK 349
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 49/184 (26%)
Query: 590 HLRNQVVNDLVEGLKKH-SWFTGFDIADEL------------PMRHS----INEWIKLAK 632
H+ N + N ++ G+ K W F D++ P+ S I+ + + ++
Sbjct: 30 HINNDLYNTILIGITKEGEWLRYFGDVDKISNNTWYQEKGCNPVAFSQSPSIHGFYEFSE 89
Query: 633 ENQATVFI-----AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNH 686
E+ + ++ +HG GEDGT+Q +L+ G+P+ G GV++S CMDK +A +A +
Sbjct: 90 ESSSITYVDAAFPVLHGRNGEDGTVQGMLKLAGIPFVGCGVLSSAMCMDKDIAHRIAQSS 149
Query: 687 --------LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 738
AD +L KD+ K + L+ P+ VKPAR G S G
Sbjct: 150 GVCVPKSISADKAMLL--KDILNKAETLRYPVF----------------VKPARAGSSFG 191
Query: 739 VARL 742
++R+
Sbjct: 192 ISRV 195
Score = 40.0 bits (92), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PA I + A ++ K ++ NAL GF+R+D F+ GE++ EVNT+PG T
Sbjct: 267 PARIDTVTA-ERIKDTARILYNALCCTGFARVDMFL-TPKGEIVFNEVNTIPGFT 319
>gi|449899489|ref|ZP_21791046.1| D-alanyl-alanine synthetase A [Streptococcus mutans R221]
gi|449258316|gb|EMC55901.1| D-alanyl-alanine synthetase A [Streptococcus mutans R221]
Length = 349
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 173/394 (43%), Gaps = 64/394 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK + I ++ L++G + E++L+ V KL V VKP
Sbjct: 124 VAMDKITTKQVLESAATIPQVAYVALIEGEPL-ENKLAE--VEEKL---IYPVFVKPANM 177
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 178 GSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR--- 215
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++ +R
Sbjct: 216 ----EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEKMR 270
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG C +R D +FL TE G + ++N + G Q S
Sbjct: 271 DYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQWS 313
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S ++ ++ A F S+
Sbjct: 314 MYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESAATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ + E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLENKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|449960628|ref|ZP_21810690.1| D-alanyl-alanine synthetase A [Streptococcus mutans 4VF1]
gi|450139567|ref|ZP_21872573.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML1]
gi|450145778|ref|ZP_21874742.1| D-alanyl-alanine synthetase A [Streptococcus mutans 1ID3]
gi|449148885|gb|EMB52716.1| D-alanyl-alanine synthetase A [Streptococcus mutans 1ID3]
gi|449167423|gb|EMB70308.1| D-alanyl-alanine synthetase A [Streptococcus mutans 4VF1]
gi|449232812|gb|EMC31908.1| D-alanyl-alanine synthetase A [Streptococcus mutans NLML1]
Length = 349
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 175/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPS----FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + E++L+ V KL V VKP
Sbjct: 124 VAMDK--ITTKQVLESVATIPQVAYVVLIEGEPL-ENKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRAD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +A +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESVATIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ + E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVVLIEGE------PLENKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRADL 192
>gi|449990375|ref|ZP_21821502.1| D-alanyl-alanine synthetase A [Streptococcus mutans NVAB]
gi|449181792|gb|EMB83857.1| D-alanyl-alanine synthetase A [Streptococcus mutans NVAB]
Length = 349
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 174/396 (43%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDK--ITTKQVLESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVR--------EKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ + A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKVVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKQVLESATTIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>gi|307107020|gb|EFN55264.1| hypothetical protein CHLNCDRAFT_57914 [Chlorella variabilis]
Length = 1817
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 134/585 (22%), Positives = 238/585 (40%), Gaps = 136/585 (23%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMD-------- 543
+ V+V+ GGD + R SL +G + +L+L+ ++ V +L S +S M+
Sbjct: 1183 QRVWVLLGGDGARRTQSLQAGLHAYLSLRNDPELLVEAFMLEPSAAGTSEMERRRVLLDR 1242
Query: 544 -----------------------ANITDPDSS-----SRVVWSLPYSLVLRHTTEEVLAA 575
+ I P + + VW L S ++R E++
Sbjct: 1243 RLELQQLGLEDEEILQEYEHLDLSRIRHPSPARFALENHGVWRLSDSGLVRGEVEDLQVG 1302
Query: 576 CIEAIEP-------------DRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADEL-PMR 621
C EA+ D A + Q + L L +W G AD+L P +
Sbjct: 1303 CEEALATANSSLATLEDRGGDIAGAQLSVARQELALLGVSLDGSAW--GGASADKLDPAQ 1360
Query: 622 HS-INEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
+ + ++ A+E A V +A+ G G LQ LLE GVPYTG G +A++TC DK
Sbjct: 1361 YMWLRDFAAQAQEVGAVVLLALAGQPAAHGPLQRLLEEAGVPYTGSGHLAAETCADK--- 1417
Query: 681 SLALNHLADLGVLTINKDVRRKEDL--LKTPIVD------IWHELTSKLQCK--TLCVKP 730
++ + L DL I+ ++K L L VD ++ +L S L +LC+KP
Sbjct: 1418 AMLIEQLIDLSTSGISTAPQQKISLPELSAQCVDEATADRLFEQLRSSLGAGPVSLCIKP 1477
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790
A GV R DL Y +A+E + +P + ++ PP + ++ EP++
Sbjct: 1478 AHACNGLGVMRATGGRDLMAYAQAVEAWVDVMPGEVLGGSPDVVMPVPPPSQFVV-EPWI 1536
Query: 791 ETDEILF-----------------SSQSTNKNADRLMWKGNS--RWVEITVGVIGKCGSM 831
T+ + + + A L W S W+ ++ ++G+ G M
Sbjct: 1537 VTEPVRVLRSADGGIVPPEGQAYPDAAPEDGLAQALHWPAASSNEWLAVSAVLLGEAGRM 1596
Query: 832 HSLMPSVTVKE----------SGDILSLEEK-----------------------FQGGTG 858
L PSV V + + D+L ++ + GTG
Sbjct: 1597 RCLGPSVRVLQLREAVAGPGSAADVLQRVQQLALVEEAAEAEDEDEADALMAAAAELGTG 1656
Query: 859 INLTPPPASIMSTEALD---------------KCKQRIELIANALQLEGFSRIDAFVNVD 903
+ P + T A D + R+E++A+ L L G + + ++ V+
Sbjct: 1657 HDEAEP--LRLLTGAFDLTPPPPTLALPTAVASARLRLEMVADRLGLSGAAEVAGYMQVE 1714
Query: 904 NGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948
GEV++ +V+T P ++P ++ QA + P+ P + ++++ +G
Sbjct: 1715 TGEVVVSDVSTTPDLSPGALIFRQAAAADAPLSPAEVLQELIRVG 1759
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 35/167 (20%)
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GS +G +A G D+L + ++ E VVVE G FT VL G V
Sbjct: 611 GSVLGGCLATGARDALVASLVLMQEHGVSEVVVEAVQPGAHHFTCSVLATDQGA----VA 666
Query: 320 LLPTEV------------ELQFQGSVDVREK------DAIFNYRRK-------YL----- 349
L PTE+ EL+ + + RE +A+ R+ YL
Sbjct: 667 LPPTELSYWDVEDDIAECELRMERWLAAREGLDPEGVEALLELLRQEQRSHPGYLGGVGS 726
Query: 350 PTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395
P+QQ+ TPP ++R+ ++ LFQ LGL D+A+ GW LP
Sbjct: 727 PSQQLRQSTPPAALSAEATQAVRQASAKLFQGLGLRDYAQFSGWVLP 773
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 153 LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDK---YDA 209
L +FA +V + G+ G +Q +LE+ VP+ G+G A DK +
Sbjct: 1364 LRDFAAQAQEVGAVVLLALAGQPAAHGPLQRLLEEAGVPYTGSGHLAAETCADKAMLIEQ 1423
Query: 210 SLEMSKQGFITVPSFLLQGSE-----VNESELSNWFVTNKLDPNSGKV--VVKPTRAGSS 262
+++S G T P + E V+E+ F + +G V +KP A +
Sbjct: 1424 LIDLSTSGISTAPQQKISLPELSAQCVDEATADRLFEQLRSSLGAGPVSLCIKPAHACNG 1483
Query: 263 IGVTVAYGVIDSLKKAKGI 281
+GV A G D + A+ +
Sbjct: 1484 LGVMRATGGRDLMAYAQAV 1502
>gi|162455138|ref|YP_001617505.1| D-alanine--D-alanine ligase [Sorangium cellulosum So ce56]
gi|161165720|emb|CAN97025.1| D-alanine-D-alanine ligase B [Sorangium cellulosum So ce56]
Length = 345
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 154/378 (40%), Gaps = 77/378 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVG++ GG S ER +SL S +V + ++ R Y + R
Sbjct: 9 RVGVVMGGSSGERDVSLRSGAAVAEALE-----ARGYDVVRI------------------ 45
Query: 139 FDFKLESLAQGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+L FG+ E L A +D F +HGR GEDG +Q VLE VP+ G+
Sbjct: 46 ------TLGDRFGA--ELCATLQRARLDAAFLALHGRLGEDGCVQGVLELAQVPYTGSSV 97
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A A DK A EM + + P + G+ + EL + V+VKP
Sbjct: 98 LASALAMDKLKAK-EMFRLHNVPTPPYYTVGANQDLEELDAVHGSFGF-----PVIVKPR 151
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+GVT A G ++ LK A + E DD +VE F+ G+E +LD
Sbjct: 152 GEGSSLGVTKA-GSLEELKSALALAFE-FDDAAIVERFV-AGTEVNVGILDG-------- 200
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
+ G++++ K +++Y KY P YH P R P + A
Sbjct: 201 ----------KVLGAIEIVPKKGLYDYEAKYTPG-MTEYHMPARLPPTRYRGVLNLAERA 249
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
Q LG R+D + + E +Y ++N + GM QTS L + A
Sbjct: 250 AQALGCTGAVRVD--------LLVTGGENEY---------VLEVNTLPGMTQTSLLPKIA 292
Query: 438 SKVGFSHSNILRTIIGHA 455
G+ ++ I+ A
Sbjct: 293 EAAGYEFGDLCEAILASA 310
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
F+A+HG +GEDG +Q +LE VPYTG V+AS MDK+
Sbjct: 68 FLALHGRLGEDGCVQGVLELAQVPYTGSSVLASALAMDKL 107
>gi|404493845|ref|YP_006717951.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
gi|123573744|sp|Q3A2G9.1|DDL_PELCD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|77545876|gb|ABA89438.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
Length = 305
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 168/384 (43%), Gaps = 93/384 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SL + +++ L RC Y +++A D
Sbjct: 10 KIAVLMGGLSAEREVSLRTGKAI------SQALTRCGYEVTDIDA------------GRD 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+LE V++ F +HGRFGEDG +Q +LE ++P+ G+G
Sbjct: 52 LAQQLEK----------------TGVEVAFIALHGRFGEDGTVQGLLELADIPYTGSGVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
A A DK + G I P F + +G ++ + L ++ +VVKP
Sbjct: 96 ASSLAMDKVATKKMLCYHG-IATPGFAVMRRGQKICGT-LPDY-----------PLVVKP 142
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFD 314
R GS+IG+++ + D + A G + E DD V+VE F+ G+E T VL D
Sbjct: 143 AREGSTIGISIVH---DEQELAAG-LEEAFRHDDLVLVEQFI-AGAEVTVGVL------D 191
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
P LP + V K ++Y+ KY P Q Y P P + ++++ A
Sbjct: 192 GQP---LPI---------IQVVPKGGFYDYQSKYTPG-QTEYLLPAPLPETLYGALQDSA 238
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+F+ +G C AR+D F+ + T + ++N I GM +TS L
Sbjct: 239 VRVFEAIGCCGAARVD--FMVTDTGFYC----------------LEVNTIPGMTETSLLP 280
Query: 435 QQASKVGFSHSNILRTIIGHACSR 458
+ A+ VG S ++ I+ A R
Sbjct: 281 KAANAVGMSFDELVERILAGASLR 304
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 120/296 (40%), Gaps = 71/296 (23%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L K FIA+HG GEDGT+Q LLE +PYTG GV+AS MDKVAT L +
Sbjct: 55 QLEKTGVEVAFIALHGRFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCY-- 112
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
G+ T V R+ ++ L L VKPAR+G + G++ + ++L
Sbjct: 113 -HGIATPGFAVMRR-----------GQKICGTLPDYPLVVKPAREGSTIGISIVHDEQEL 160
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
LEE ++++ E F+
Sbjct: 161 AA---GLEEAFRH-------------------DDLVLVEQFIA----------------- 181
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
E+TVGV+ +P + V G + K+ G L P P
Sbjct: 182 --------GAEVTVGVLDG-----QPLPIIQVVPKGGFYDYQSKYTPGQTEYLLPAPLPE 228
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
AL R + A+ G +R+D F+ D G +EVNT+PGMT +++L
Sbjct: 229 TLYGALQDSAVR---VFEAIGCCGAARVD-FMVTDTG-FYCLEVNTIPGMTETSLL 279
>gi|365827023|ref|ZP_09368899.1| hypothetical protein HMPREF0975_00682 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265488|gb|EHM95249.1| hypothetical protein HMPREF0975_00682 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 315
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 155/360 (43%), Gaps = 79/360 (21%)
Query: 78 LRVGLICGGPSAERGISLNSAR---SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LR+ ++ GG S ER ISL S VL H+ G +LV
Sbjct: 6 LRIAVLAGGLSHERDISLRSGHRVAQVLKHL-GHTVLV---------------------- 42
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D D A+ GSL F D+V+P +HG GEDGG+Q VL +P+VG
Sbjct: 43 --LDID------ARAIGSLKTFGP------DVVWPLVHGGPGEDGGLQNVLIALGLPYVG 88
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
T S C++A K A + G IT S L S S+L V + + G VV
Sbjct: 89 THSDGCQRASFKPTAKASVRTGGVITPDSLTLPHSYF--SQLGAQEVLTVVAGHLGLPVV 146
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP + GS +GV+ A D L+ A + D+R ++E ++ G+E V+D G G
Sbjct: 147 VKPHQGGSGLGVSYA-STADELRSAM-VACFAYDERALIERYVP-GTELAVSVVDTGEG- 202
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P L P EV D +++ +Y P + Y P R VI+ +++
Sbjct: 203 ---PRALPPVEV-----------VTDGQYDFDARYNPGRS-EYFVPARLDDSVIDMVKDT 247
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A + + LGL + +R D E G+ F D+N+I GM +TS L
Sbjct: 248 AITVHKTLGLGNLSRTDLIL-----------------DEAGSPWFIDVNVIPGMTETSLL 290
>gi|406659245|ref|ZP_11067383.1| D-alanine-D-alanine ligase [Streptococcus iniae 9117]
gi|405577354|gb|EKB51502.1| D-alanine-D-alanine ligase [Streptococcus iniae 9117]
Length = 348
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 178/394 (45%), Gaps = 65/394 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV++ I D LV+ Y+I + + + ++SA++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMNAINYDKFLVKTYFISQEGEFFKTQSFDQKPLASAKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D K+++ S+ E A +VFP +HG GEDG IQ LE +P+V
Sbjct: 68 NATKDMSQKIKA--------SDIYEKDA----VVFPVLHGPMGEDGSIQGFLEILKMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
GT + A DK + G V + ++G ++ EL+ + L+ + +
Sbjct: 116 GTTILSSSVAMDKITTKHVLESAGIPQVAYTVYIEGEDL---ELA---IAESLEKLTFPI 169
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
VKP GSS+G++ A ++ L++A + L+ D R+++E L A ++VG
Sbjct: 170 FVKPANMGSSVGISKAETQVE-LREAIKLALK-YDSRILIEQGL------VAREIEVGLL 221
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
+ LP EV KD A ++Y+ KY+ ++ P ++ +R
Sbjct: 222 GNTQVSSTLPGEV-----------VKDVAFYDYKAKYV-DNKITMAIPAEIEAPIVADMR 269
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A F+ +G C +R D +FL TE G I ++N + G Q S
Sbjct: 270 RYAEQAFRAIGACGLSRCD-FFL----------------TEDGKIYLNELNTMPGFTQWS 312
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S+++ ++ A F S+
Sbjct: 313 MYPLLWENMGMSYSDLIEKLVNLAKEVFEKRESH 346
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 129/328 (39%), Gaps = 79/328 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T + L G+
Sbjct: 84 EKDAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTTILSSSVAMDKITTK---HVLESAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ V + + L+ I + +LT + VKPA G S G+
Sbjct: 141 PQVAYTVYIEGEDLELAIAESLEKLTF-----PIFVKPANMGSSVGI------------- 182
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
S+A +E+ + A +L K
Sbjct: 183 ---------------SKAETQVEL---------------------------REAIKLALK 200
Query: 813 GNSRWV--------EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
+SR + EI VG++G + S +P VK D+ + K +
Sbjct: 201 YDSRILIEQGLVAREIEVGLLGNT-QVSSTLPGEVVK---DVAFYDYKAKYVDNKITMAI 256
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
PA I + D ++ E A+ G SR D F+ D G++ + E+NT+PG T +
Sbjct: 257 PAEIEAPIVAD-MRRYAEQAFRAIGACGLSRCDFFLTED-GKIYLNELNTMPGFTQWS-- 312
Query: 925 IHQALSEQPPMYPHQFFRKVLDLGSERF 952
++ L E M K+++L E F
Sbjct: 313 MYPLLWENMGMSYSDLIEKLVNLAKEVF 340
>gi|325066331|ref|ZP_08125004.1| D-alanine--D-alanine ligase [Actinomyces oris K20]
Length = 315
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 152/360 (42%), Gaps = 79/360 (21%)
Query: 78 LRVGLICGGPSAERGISLNSAR---SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LR+ ++ GG S ER ISL S VL H+ G +LV
Sbjct: 6 LRIAVLAGGLSHERDISLRSGHRVAQVLKHL-GHTVLV---------------------- 42
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D D A+ GSL F D+V+P +HG GEDGG+Q VL +P+VG
Sbjct: 43 --LDID------ARTIGSLKTFGP------DVVWPLVHGGPGEDGGLQNVLISLGLPYVG 88
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
T S C++A K A + G IT S L S S+L V + + G VV
Sbjct: 89 THSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYF--SQLGAQEVLTVVAGHLGLPVV 146
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP + GS +GV+ A D L+ A + D+R ++E ++ G+E V+D G G
Sbjct: 147 VKPHQGGSGLGVSYA-STADELRSAM-VACFAYDERALIERYI-AGTELAVSVVDTGEG- 202
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P L P EV D +++ +Y P + Y P R VI ++
Sbjct: 203 ---PRALPPVEV-----------VTDGQYDFDARYNPGRS-EYFVPARLDEAVIEKVKTT 247
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A + LGL + +R D + GT F D+N+I GM +TS L
Sbjct: 248 AVTVHTTLGLGNLSRTDLIL-----------------DDEGTPWFIDVNVIPGMTETSLL 290
>gi|343523224|ref|ZP_08760186.1| D-ala D-ala ligase N-terminal-like domain protein [Actinomyces sp.
oral taxon 175 str. F0384]
gi|343400380|gb|EGV12898.1| D-ala D-ala ligase N-terminal-like domain protein [Actinomyces sp.
oral taxon 175 str. F0384]
Length = 315
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 155/360 (43%), Gaps = 79/360 (21%)
Query: 78 LRVGLICGGPSAERGISLNSAR---SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LR+ ++ GG S ER ISL S VL H+ G +LV
Sbjct: 6 LRIAVLAGGLSHERDISLRSGHRVAQVLKHL-GHTVLV---------------------- 42
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D D A+ GSL F D+V+P +HG GEDGG+Q VL +P+VG
Sbjct: 43 --LDID------ARTIGSLKTFGP------DVVWPLVHGGPGEDGGLQNVLISLGLPYVG 88
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
T S C++A K A + G IT S L S S+L V + + G VV
Sbjct: 89 THSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYF--SQLGAQEVLTVVAGHLGLPVV 146
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP + GS +GV+ A D L+ A + D+R ++E ++ G+E V+D G G
Sbjct: 147 VKPHQGGSGLGVSYA-STADELRSAM-VACFAYDERALIERYV-AGTELAVSVVDTGEG- 202
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P L P EV D +++ +Y P + Y P R VI +++
Sbjct: 203 ---PRALPPVEV-----------VTDGQYDFDARYNPGRS-EYFVPARLDEAVIEKVKKT 247
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A + LGL + +R D + E +T W F D+N+I GM +TS L
Sbjct: 248 AITVHTTLGLGNLSRTD---------LILDDE----ATPW----FIDVNVIPGMTETSLL 290
>gi|400293350|ref|ZP_10795226.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
naeslundii str. Howell 279]
gi|399901591|gb|EJN84470.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
naeslundii str. Howell 279]
Length = 315
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 155/360 (43%), Gaps = 79/360 (21%)
Query: 78 LRVGLICGGPSAERGISLNSAR---SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LR+ ++ GG S ER ISL S VL H+ G +LV
Sbjct: 6 LRIAVLAGGLSHERDISLRSGHRVAQVLKHL-GHTVLV---------------------- 42
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D D A+ GSL F D+V+P +HG GEDGG+Q +L ++P+VG
Sbjct: 43 --LDID------ARTIGSLKTFGP------DVVWPLVHGGPGEDGGLQNMLIALDLPYVG 88
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
T S C++A K A + G IT S L S S+L V + + G VV
Sbjct: 89 THSDGCQRASFKPTAKASVRTGGVITPDSLTLPHSYF--SQLGAQDVLTVVAGHLGLPVV 146
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP + GS +GV+ A D L+ A + D+R ++E ++ G+E V+D G G
Sbjct: 147 VKPHQGGSGLGVSYA-STADDLRSAM-VACFAYDERALIERYVP-GTELAVSVVDTGEG- 202
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P L P EV + Q +++ +Y P + Y P R VI+ ++
Sbjct: 203 ---PRALPPVEVVTEGQ-----------YDFDARYNPGRS-EYFVPARLDDSVIDMVKTT 247
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A + LGL + +R D E GT F D+N+I GM +TS L
Sbjct: 248 AITVHTTLGLGNLSRTDLIL-----------------DEEGTPWFIDVNVIPGMTETSLL 290
>gi|326772852|ref|ZP_08232136.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505]
gi|326637484|gb|EGE38386.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505]
Length = 315
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 153/360 (42%), Gaps = 79/360 (21%)
Query: 78 LRVGLICGGPSAERGISLNSAR---SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LR+ ++ GG S ER ISL S VL H+ G +LV
Sbjct: 6 LRIAVLAGGLSHERDISLRSGHRVAQVLKHL-GHTVLV---------------------- 42
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D D A+ GSL F D+V+P +HG GEDGG+Q +L +P+VG
Sbjct: 43 --LDID------ARTIGSLKTFGP------DVVWPLVHGGPGEDGGLQNILISLGLPYVG 88
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
T S C++A K A + G IT S L S S+L V + + G VV
Sbjct: 89 THSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYF--SQLGAQEVLTVVAGHLGLPVV 146
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP + GS +GV+ A D L+ A + D+R ++E ++ G+E V+D G G
Sbjct: 147 VKPHQGGSGLGVSYA-STADELRSAM-VACFAYDERALIERYV-AGTELAVSVVDTGEG- 202
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P L P EV D +++ +Y P + Y P R VI +++
Sbjct: 203 ---PRALPPVEV-----------VTDGQYDFDARYNPGRS-EYFVPARLDEAVIEKVKKT 247
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A + LGL + +R D + GT F D+N+I GM +TS L
Sbjct: 248 AITVHTTLGLGNLSRTDLIL-----------------DDEGTPWFIDVNVIPGMTETSLL 290
>gi|422804455|ref|ZP_16852887.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
gi|324114603|gb|EGC08571.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
Length = 364
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 177/395 (44%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQ-GQWHVSDAANYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSL------SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + SLAQ G ++ A+ L VD++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALRPSATSLAQVPGKHEQQLIDAQTAQPLP-TVDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK D + + + + + F+ + N S ++ +
Sbjct: 122 VANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANRSTITFAEIEA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
+L + VKP GSS+GV+ + KKA + E D +VVVE ++ G E
Sbjct: 177 QL---GLPLFVKPANQGSSVGVSKVTNEAE-YKKAVDLAFE-YDHKVVVEKGIK-GREIE 230
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + Y KY+ P P
Sbjct: 231 CAVL----GND-HPQASTCGEIVLNSD----------FYAYDTKYIDDDGAKVVVPAAIP 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IRE A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 276 AEINDKIREIAVKAYQTLGCAGMARVDVFLTPENDVVINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G S+++++ +I A R
Sbjct: 328 YPKLWQAS---------GLSYTDLITRLIELALER 353
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 62/314 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFVT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R + + E+ ++L L VKPA G S GV+++ + Y KA++
Sbjct: 161 LTRANRSTIT------FAEIEAQLGLP-LFVKPANQGSSVGVSKVTNEAE---YKKAVDL 210
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+F H +++ + +
Sbjct: 211 --------AFEYDH------------------------------------KVVVEKGIKG 226
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V+G S + + + D + + K+ G + P A + E DK
Sbjct: 227 REIECAVLGNDHPQASTCGEIVL--NSDFYAYDTKYIDDDGAKVVVPAA--IPAEINDKI 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 937
++ L G +R+D F+ +N +V+I E+NT+PG T + ++ L + +
Sbjct: 283 REIAVKAYQTLGCAGMARVDVFLTPEN-DVVINEINTLPGFT--NISMYPKLWQASGLSY 339
Query: 938 HQFFRKVLDLGSER 951
++++L ER
Sbjct: 340 TDLITRLIELALER 353
>gi|312868929|ref|ZP_07729110.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
PB013-T2-3]
gi|417886564|ref|ZP_12530708.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
F0423]
gi|311095547|gb|EFQ53810.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
PB013-T2-3]
gi|341592955|gb|EGS35812.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
F0423]
Length = 377
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 179/399 (44%), Gaps = 64/399 (16%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYAISSAQV 131
+ LRV L+ GG S+E +S SA ++ D + D V + ++ NAY S ++
Sbjct: 3 KKLRVALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAY---SQRI 59
Query: 132 YSNTPADFDFKLESLAQGFGSLS---EFAEHLAAN----VDIVFPTIHGRFGEDGGIQEV 184
+ P D + +A + + A +A N VD +P IHG GEDG IQ +
Sbjct: 60 FDGEPED-----QVVADAYQHMDLDRPLAPIMALNELEAVDFFYPVIHGNLGEDGTIQGL 114
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
+ P+VG+G A +FDK +++ G P LL + N++E S W +
Sbjct: 115 FKLLKKPYVGSGISASALSFDKDLTKKMLNEAGIRNTPYVLL--TPENQAEYS-W---GR 168
Query: 245 LDPNSGKVV-VKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
L+ G ++ +KP R GSS+G VT A +LK A D +V+ E L+
Sbjct: 169 LEEELGNLIFIKPARQGSSVGIHRVTNAEEYAAALKDAF-----KYDFKVLAEKGLDRPQ 223
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E +L + HPV G+V V E D ++Y K++ V + P
Sbjct: 224 EIEISILG-----NEHPVA--------SKLGAVRVPESDPFYDYENKFVDASGVVFELPV 270
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P + + I E A ++ LG+ +RID FL S ++ SE +T G FT+
Sbjct: 271 KLPQYLTDEITEMALKAYRVLGMKGLSRID--FLVDSNNIPYLSEP---NTLPG---FTN 322
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
I+L M + S G S+S+++ +I + F
Sbjct: 323 ISLYPQMWEVS---------GISYSDLIDRLIELGLAEF 352
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 106/284 (37%), Gaps = 63/284 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+ +HG +GEDGT+Q L + PY G G+ AS DK T LN
Sbjct: 98 YPVIHGNLGEDGTIQGLFKLLKKPYVGSGISASALSFDKDLTKKMLNEAG---------- 147
Query: 699 VRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+R +L TP W L +L + +KPAR G S G+ R+ AE+ Y AL
Sbjct: 148 IRNTPYVLLTPENQAEYSWGRLEEEL-GNLIFIKPARQGSSVGIHRVTNAEE---YAAAL 203
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
++ + L KG
Sbjct: 204 KDAF-------------------------------------------KYDFKVLAEKGLD 220
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
R EI + ++G + S + +V V ES E KF +G+ P + D
Sbjct: 221 RPQEIEISILGNEHPVASKLGAVRVPESDPFYDYENKFVDASGVVFELPVK--LPQYLTD 278
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + L ++G SRID V+ +N L E NT+PG T
Sbjct: 279 EITEMALKAYRVLGMKGLSRIDFLVDSNNIPYL-SEPNTLPGFT 321
>gi|357636064|ref|ZP_09133939.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus macacae
NCTC 11558]
gi|357584518|gb|EHJ51721.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus macacae
NCTC 11558]
Length = 350
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 173/381 (45%), Gaps = 49/381 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA S++ + D LV+ Y+I + + I + Q +S P +
Sbjct: 8 LLYGGRSAEREVSVLSAESIIQAVNYDKFLVKTYFITQT--GHFIKT-QEFSQLPLKTE- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG +Q LE +P+VGT +
Sbjct: 64 KLMTNDTVIASQKIKPSDIYEKGAVVFPILHGPMGEDGSVQGFLEILKMPYVGTNILSSA 123
Query: 202 QAFDKYDAS--LEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK LE S+ VP +G +++++ NKL + V VKP
Sbjct: 124 LAMDKIATKQVLESSQNQIPQVPYITYFEGEDLSQTVFE---AENKL---TYPVFVKPAN 177
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ A + LK A + L+ D R+++E EG A ++VG
Sbjct: 178 MGSSVGISKARNQTE-LKTAIALALK-YDSRILIE---EG---VKAREIEVG-------- 221
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+L TE++ G +V + A ++Y KY+ Q+ P + +R+ A L F
Sbjct: 222 ILGNTEIKTTLPG--EVVKNVAFYDYEAKYI-DNQIKMAIPAEVSEEISAKMRQYAKLAF 278
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
Q LG C +R D +FL TE G I ++N + G Q S
Sbjct: 279 QMLGGCGLSRCD-FFL----------------TEDGHIYLNELNTMPGFTQWSMYPLLWE 321
Query: 439 KVGFSHSNILRTIIGHACSRF 459
+G S+S+++ ++ A +F
Sbjct: 322 NMGLSYSDLIERLVMLAKEKF 342
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 130/324 (40%), Gaps = 69/324 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL----NHLA 688
E A VF +HG +GEDG++Q LE +PY G +++S MDK+AT L N +
Sbjct: 84 EKGAVVFPILHGPMGEDGSVQGFLEILKMPYVGTNILSSALAMDKIATKQVLESSQNQIP 143
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ +T + EDL +T + + ++LT + VKPA G S G+
Sbjct: 144 QVPYITYFEG----EDLSQT-VFEAENKLTY-----PVFVKPANMGSSVGI--------- 184
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
S+A E+ L ++ R
Sbjct: 185 -------------------SKARNQTELKTAIALALKYD-------------------SR 206
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + + EI VG++G + + +P VK E K+ I + P
Sbjct: 207 ILIEEGVKAREIEVGILGNT-EIKTTLPGEVVKNVA-FYDYEAKYIDNQ-IKMAIPAE-- 261
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+S E K +Q +L L G SR D F+ D G + + E+NT+PG T + ++
Sbjct: 262 VSEEISAKMRQYAKLAFQMLGGCGLSRCDFFLTED-GHIYLNELNTMPGFTQWS--MYPL 318
Query: 929 LSEQPPMYPHQFFRKVLDLGSERF 952
L E + +++ L E+F
Sbjct: 319 LWENMGLSYSDLIERLVMLAKEKF 342
>gi|320532833|ref|ZP_08033608.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320134948|gb|EFW27121.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 315
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 153/360 (42%), Gaps = 79/360 (21%)
Query: 78 LRVGLICGGPSAERGISLNSAR---SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LR+ ++ GG S ER ISL S VL H+ G +LV
Sbjct: 6 LRIAVLAGGLSHERDISLRSGHRVAQVLKHL-GHTVLV---------------------- 42
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D D A+ GSL F D+V+P +HG GEDGG+Q VL +P+VG
Sbjct: 43 --LDID------ARTIGSLRTFGP------DVVWPLVHGGPGEDGGLQNVLIALGLPYVG 88
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
T S C++A K A + G IT S L S S++ V + + G VV
Sbjct: 89 THSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYF--SQMGAQEVLTVVAGHLGLPVV 146
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP + GS +GV+ A D L+ A + D+R ++E ++ G+E V+D G G
Sbjct: 147 VKPHQGGSGLGVSYA-STADELRSAM-VACFAYDERALIERYVP-GTELAVSVVDTGEG- 202
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P L P EV D +++ +Y P + Y P R VI +++
Sbjct: 203 ---PHALPPVEV-----------VTDGQYDFDARYNPGRS-EYFVPARLDDAVIETVKAT 247
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A + LGL + +R D + GT F D+N+I GM +TS L
Sbjct: 248 AVTVHTTLGLGNLSRTDLIL-----------------DDEGTPWFIDVNVIPGMTETSLL 290
>gi|386585768|ref|YP_006082170.1| D-alanine--D-alanine ligase [Streptococcus suis D12]
gi|353737914|gb|AER18922.1| D-alanine--D-alanine ligase [Streptococcus suis D12]
Length = 348
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 170/397 (42%), Gaps = 71/397 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Q +S TPA D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGD---FIKTQEFSQTPAA-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGK----VVVKP 256
A DK + G VP +++G ++ +K+ GK V VKP
Sbjct: 124 VAMDKITTKRVLESAGISQVPYVAVIEGENID----------DKIAEIEGKLTYPVFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A + L+KA + + D RV+VE G +
Sbjct: 174 ANMGSSVGISKAED-LAGLRKALDLAFK-YDSRVLVE-----------------QGVNAR 214
Query: 317 PVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
E+E+ G+ DV+ KD A ++Y KY+ ++ P + +++
Sbjct: 215 -------EIEVGLLGNADVKTTLPGEVVKDVAFYDYDAKYI-DNKITMEIPAKIDESIMD 266
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
++R+ A+ F+ +G C +R D +FL TE G I ++N + G
Sbjct: 267 TMRDNAAKAFRAIGGCGLSRCD-FFL----------------TEDGDIFLNELNTMPGFT 309
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
Q S +G ++ +++ ++ A F S+
Sbjct: 310 QWSMYPLLWDNMGLAYPDLIEELVRLAKEMFEKRESH 346
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 116/290 (40%), Gaps = 67/290 (23%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 84 EEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLES---AGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I +I +LT + VKPA G S G+++ AEDL
Sbjct: 141 SQVPYVAVIEGENIDDKIAEIEGKLTY-----PVFVKPANMGSSVGISK---AEDLAGLR 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
KAL+ L F + D + Q N
Sbjct: 193 KALD---------------------------LAF----KYDSRVLVEQGVNAR------- 214
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA---SIM 869
EI VG++G + + +P VK+ + K+ I + P SIM
Sbjct: 215 ------EIEVGLLGNA-DVKTTLPGEVVKDVA-FYDYDAKYIDNK-ITMEIPAKIDESIM 265
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
T D + I G SR D F+ D G++ + E+NT+PG T
Sbjct: 266 DT-MRDNAAKAFRAIGGC----GLSRCDFFLTED-GDIFLNELNTMPGFT 309
>gi|329944757|ref|ZP_08292836.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328529893|gb|EGF56783.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 315
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 152/360 (42%), Gaps = 79/360 (21%)
Query: 78 LRVGLICGGPSAERGISLNSAR---SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LR+ ++ GG S ER ISL S VL H+ G +LV
Sbjct: 6 LRIAVLAGGLSHERDISLRSGHRVAQVLKHL-GHTVLV---------------------- 42
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D D A+ GSL F D+V+P +HG GEDGG+Q +L +P+VG
Sbjct: 43 --LDID------ARTIGSLKTFGP------DVVWPLVHGGPGEDGGLQNMLIALGLPYVG 88
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
T S C++A K A + G IT S L S S+L V + + G VV
Sbjct: 89 THSDGCQRASFKPTAKASVRTGGVITPDSLTLPHSYF--SQLGAQEVLTVVAGHLGLPVV 146
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP + GS +GV+ A D L+ A + D+R ++E ++ G+E V+D G G
Sbjct: 147 VKPHQGGSGLGVSYA-STADELRSAM-VACFAYDERALIERYVP-GTELAVSVVDTGEG- 202
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P L P EV D +++ +Y P + Y P R VI ++
Sbjct: 203 ---PRALPPVEV-----------VTDGQYDFDARYNPGRS-EYFVPARLNDSVIEMVKST 247
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A + LGL + +R D E GT F D+N+I GM +TS L
Sbjct: 248 AVTVHSTLGLGNLSRTDLIL-----------------DEEGTPWFIDVNVIPGMTETSLL 290
>gi|387760739|ref|YP_006067716.1| D-alanine--D-alanine ligase [Streptococcus salivarius 57.I]
gi|339291506|gb|AEJ52853.1| D-alanine--D-alanine ligase [Streptococcus salivarius 57.I]
Length = 348
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 171/393 (43%), Gaps = 63/393 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEVA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENEAE-LRAAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ +V+ D A ++Y+ KY+ ++ P P V+ +R
Sbjct: 212 VAREIEVGILGNTNVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPAHVPAEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S++++ ++ F S+
Sbjct: 314 YPLLWENMGLSYSDLIKELVALGQEMFDKRESH 346
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-G 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ ++ G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMT----KHILEVAG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L+ + + +LT + VKPA G S G+++
Sbjct: 140 VPQVAYTVFIEGEDLEVAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|228477325|ref|ZP_04061963.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126]
gi|228251344|gb|EEK10515.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126]
Length = 348
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 170/393 (43%), Gaps = 63/393 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENEAE-LRAAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P P+ V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPAHVPVEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+SN+++ ++ F S+
Sbjct: 314 YPLLWENMGLSYSNLIKELVTLGQEMFDKRESH 346
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-G 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ ++ G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMT----KHILEVAG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L+ + + +LT + VKPA G S G+++
Sbjct: 140 VPQVAYTVFIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|227510155|ref|ZP_03940204.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227513084|ref|ZP_03943133.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
gi|227083659|gb|EEI18971.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
gi|227190360|gb|EEI70427.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 375
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 170/393 (43%), Gaps = 52/393 (13%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI---SSAQVY 132
+ L VGLI GG S+E +S SA ++ D + D V + + +N Y + +S +V+
Sbjct: 5 KKLHVGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKN--GYFLGTKASTRVF 62
Query: 133 SNTPADFDFKLESLAQ-----GFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+ P D D + +A+ + +E +N+D+ FP IHG GEDG IQ +L
Sbjct: 63 NGEPED-DVARQEIAKLDKSNPLAPILNLSED--SNIDVFFPIIHGNLGEDGTIQGLLRL 119
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N P+VG+G +FDK + G T LL V + + + L
Sbjct: 120 LNKPYVGSGVLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEK------YSYDSLSA 173
Query: 248 NSGKVV-VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
GK++ VKP GSS+G+ D + + D++V+VE +EG E V
Sbjct: 174 ELGKILFVKPANQGSSVGIHKVETSDDYDEAIRDAF--RYDNKVLVEEAIEGPEELEISV 231
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
L + HP+ ++V GS+ V DA + Y K++ QV + P P +
Sbjct: 232 LG-----NHHPIA---SKV-----GSIKVPADDAFYTYDNKFVDASQVKFDVPVDIPEAL 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ + A ++ LGL ARID FL V SE +++N + G
Sbjct: 279 SKELTKMALDSYRALGLKGMARID--FL-----VSQDSEP----------YVSEVNTLPG 321
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S Q + G S+ ++ +I A +
Sbjct: 322 FTNISLYPQLFAASGISYRELIDRLIQLANEEY 354
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 122/294 (41%), Gaps = 60/294 (20%)
Query: 628 IKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 686
+ L++++ VF + HG +GEDGT+Q LL PY G GV+ S DK T L
Sbjct: 88 LNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSGVLGSAMSFDKDITKKILK- 146
Query: 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
LA GV T R E L + ++ S K L VKPA G S G+ ++ ++
Sbjct: 147 LA--GVATT-----RYELLTPLTVEKYSYDSLSAELGKILFVKPANQGSSVGIHKVETSD 199
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806
D Y +A+ + R + + E +E E
Sbjct: 200 D---YDEAIRDAF---------RYDNKV----------LVEEAIEGPE------------ 225
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
E+ + V+G + S + S+ V + + KF + + P
Sbjct: 226 ------------ELEISVLGNHHPIASKVGSIKVPADDAFYTYDNKFVDASQVKFDVP-- 271
Query: 867 SIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ EAL K ++ L + AL L+G +RID V+ D+ E + EVNT+PG T
Sbjct: 272 -VDIPEALSKELTKMALDSYRALGLKGMARIDFLVSQDS-EPYVSEVNTLPGFT 323
>gi|223984928|ref|ZP_03635031.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM
12042]
gi|223963097|gb|EEF67506.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM
12042]
Length = 350
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 169/391 (43%), Gaps = 53/391 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAY--AISSAQVYSN- 134
L V ++ GG S E +SL+SA VL + + V ID + + + S+A++ ++
Sbjct: 5 LNVAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEADQ 64
Query: 135 --TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPF 192
T +D +L + F E E A +VD+ FP +HGR GEDG +Q + E +++PF
Sbjct: 65 WHTASDQRLRLTLARRNFELKDETGE--AVDVDVFFPVLHGRNGEDGTLQGMFELFHIPF 122
Query: 193 VGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG-SEVNESELSNWFVTNKLDPNSGK 251
VG G A DK S ++++Q I V F++ SE+++ S L
Sbjct: 123 VGCGMDASLLGMDKA-LSHQLARQNGIEVSPFVVFAYSEIDQKRES-------LKRLHLP 174
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
VKP R GSSIG+T + L A + D R+++E + G E +L+
Sbjct: 175 CFVKPARGGSSIGIT-KINTWEELDAACACAAKH-DRRILIEEAV-SGEEIGCSILETPD 231
Query: 312 GFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G +VL G+VD + F+Y KY+ T P + P V +
Sbjct: 232 G-----LVL----------GAVDRIHLNSDFFDYEEKYVDT-HAEVECPAQLPDFVSEQM 275
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R A L++ R+D + P ILF +IN + GM T
Sbjct: 276 RRLARKLWEIHHCQGLVRVDCFLTPDQ-----------------RILFNEINTLPGMTAT 318
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
S + + G S IL T+I A R N
Sbjct: 319 SRYPRMMGQAGISFETILDTLIEEALQRGKN 349
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 107/285 (37%), Gaps = 64/285 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH-LADLGVLTINK 697
F +HG GEDGTLQ + E +P+ G G+ AS MDK AL+H LA + ++
Sbjct: 98 FPVLHGRNGEDGTLQGMFELFHIPFVGCGMDASLLGMDK-----ALSHQLARQNGIEVSP 152
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V + +D E +L VKPAR G S G+ ++ E+L +
Sbjct: 153 FV-----VFAYSEIDQKRESLKRLHLPCF-VKPARGGSSIGITKINTWEELDAACACAAK 206
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
RI + E V +EI S T
Sbjct: 207 HDRRI----------------------LIEEAVSGEEIGCSILETPDGL----------- 233
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
V+G +H + D EEK+ P +E + +
Sbjct: 234 ------VLGAVDRIHL---------NSDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRL 278
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
+++ I + +G R+D F+ D +L E+NT+PGMT ++
Sbjct: 279 ARKLWEIHHC---QGLVRVDCFLTPDQ-RILFNEINTLPGMTATS 319
>gi|340783405|ref|YP_004750012.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus SM-1]
gi|340557556|gb|AEK59310.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus SM-1]
Length = 317
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 153/383 (39%), Gaps = 78/383 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+CGGPS ER +SL SA +V ++ VR ID I ++
Sbjct: 6 RIALLCGGPSGEREVSLASAAAVRRALEAAG--VRVVAID-------IEPQRIQ------ 50
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
E LAQ + + VF HG+FGEDG +Q LE +P+ G+G
Sbjct: 51 -----EQLAQ-------------SGAEFVFNVCHGQFGEDGVLQACLEASGLPYTGSGVL 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK+ + G T LQ V ++L V VKP R
Sbjct: 93 ASALAMDKWRSKRLWQAAGLPTTRGQWLQREHVTGGSPCGQSSADELHIARWPVFVKPNR 152
Query: 259 AGSSIGVTV---AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
AGSS+G++ A G+ +++ KA +D ++VE ++G IV +G
Sbjct: 153 AGSSLGISRVENAAGLAEAMAKAF-----AVDSEILVEEAVDGLEATVGIV----AGRTL 203
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P+V+ P A ++Y KYL Y P P ++E A
Sbjct: 204 PPIVIRP---------------HRAFYDYEAKYL-ADDTEYLLPSGLPTATERRLQELAL 247
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ LG D+ R+D FL + G I ++N + GM S +
Sbjct: 248 QAFRELGGRDWGRVD--FLVDAE---------------GGIHLLELNAVPGMTDHSLVPM 290
Query: 436 QASKVGFSHSNILRTIIGHACSR 458
A +G++ + + I+ A R
Sbjct: 291 AARALGWTMTKLCLEIVSTAQRR 313
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 121/301 (40%), Gaps = 69/301 (22%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+LA+ VF HG GEDG LQ+ LEA G+PYTG GV+AS MDK S L A
Sbjct: 52 QLAQSGAEFVFNVCHGQFGEDGVLQACLEASGLPYTGSGVLASALAMDKW-RSKRLWQAA 110
Query: 689 DLGVLTINKDVRRKEDLLKTPI----VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
L T + ++R+ +P D H + + VKP R G S G++R+
Sbjct: 111 GLPT-TRGQWLQREHVTGGSPCGQSSADELH-----IARWPVFVKPNRAGSSLGISRV-- 162
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
A G+ E + + F EIL +
Sbjct: 163 -----------------------ENAAGLAEA--------MAKAFAVDSEIL-----VEE 186
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
D L E TVG++ +P + ++ E K+ L P
Sbjct: 187 AVDGL---------EATVGIVAG-----RTLPPIVIRPHRAFYDYEAKYLADDTEYLLP- 231
Query: 865 PASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
S + T A ++ Q + L A L + R+D V+ + G + ++E+N VPGMT ++
Sbjct: 232 --SGLPT-ATERRLQELALQAFRELGGRDWGRVDFLVDAEGG-IHLLELNAVPGMTDHSL 287
Query: 924 L 924
+
Sbjct: 288 V 288
>gi|313890784|ref|ZP_07824409.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
pseudoporcinus SPIN 20026]
gi|416851776|ref|ZP_11908921.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
pseudoporcinus LQ 940-04]
gi|313120885|gb|EFR43999.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739265|gb|EHI64497.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
pseudoporcinus LQ 940-04]
Length = 348
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 163/379 (43%), Gaps = 47/379 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D LV+ Y+I + + Y Q +S PA+ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDRFLVKTYFISQAGDFY---KTQEWSQKPAETE- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + + A + +VFP +HG GEDG IQ LE +P++GT
Sbjct: 64 KLMTNQTIVAASQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYIGTSILGSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G+ + E + L S + VKP G
Sbjct: 124 VAMDKITTKRVLESAGVPQVAYKVFVEGNSLEEC------LKEALTNLSFPIFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A L++A + L+ D R+++E A ++VG +
Sbjct: 178 SSVGISKAESE-SELREAIQLALQ-YDSRILIE------QGVNAREIEVGLLGNTDVTST 229
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
LP EV V+E A ++Y+ KY+ + P + N +R A F+
Sbjct: 230 LPGEV---------VKEV-AFYDYQAKYIDN-NITMAIPAELETELANKMRAYAENAFKA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LG C +R D +FL T G+I ++N + G Q S +
Sbjct: 279 LGCCGLSRCD-FFL----------------TRDGSIYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRF 459
G S+S+++ ++ A F
Sbjct: 322 GLSYSDLIEKLVALAIEMF 340
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 125/324 (38%), Gaps = 71/324 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G ++ S MDK+ T L GV
Sbjct: 84 EEGAVVFPILHGPMGEDGSIQGFLEVLKMPYIGTSILGSSVAMDKITTKRVLE---SAGV 140
Query: 693 LTINKDV----RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ V E+ LK + ++ + VKPA G S G+++ AE
Sbjct: 141 PQVAYKVFVEGNSLEECLKEALTNLSF---------PIFVKPANMGSSVGISK---AESE 188
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
+ +A++ L + D + Q N
Sbjct: 189 SELREAIQLAL-------------------------------QYDSRILIEQGVNAR--- 214
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
EI VG++G + S +P VKE + K+ N+T +
Sbjct: 215 ----------EIEVGLLGNT-DVTSTLPGEVVKEVA-FYDYQAKYIDN---NITMAIPAE 259
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+ TE +K + E AL G SR D F+ D G + + E+NT+PG T + ++
Sbjct: 260 LETELANKMRAYAENAFKALGCCGLSRCDFFLTRD-GSIYLNELNTMPGFTQWS--MYPL 316
Query: 929 LSEQPPMYPHQFFRKVLDLGSERF 952
L E + K++ L E F
Sbjct: 317 LWENMGLSYSDLIEKLVALAIEMF 340
>gi|55823487|ref|YP_141928.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus CNRZ1066]
gi|81559066|sp|Q5LYJ2.1|DDL_STRT1 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|55739472|gb|AAV63113.1| D-alanine-D-alanine ligase [Streptococcus thermophilus CNRZ1066]
Length = 348
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 167/380 (43%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKRILEVAGVPQVAYTVYIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G S+S+I++ ++
Sbjct: 314 YPLLWENMGLSYSDIIKELV 333
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T L GV
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMTKRILEV---AGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ V + + L+ + + +LT + VKPA G S G+++
Sbjct: 141 PQVAYTVYIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|222153385|ref|YP_002562562.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J]
gi|254767741|sp|B9DUS0.1|DDL_STRU0 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|222114198|emb|CAR42743.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J]
Length = 348
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 174/386 (45%), Gaps = 49/386 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Y Q ++ P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFHVKTYFISQAGDFY---KTQEFTVQPSESE- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A SL A + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNASLDASLKIKASDIYEDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G+++ + +T L+ S + VKP G
Sbjct: 124 VAMDKITTKRVLESAGIPQVNYTVYIEGNDLEDC------ITETLETLSFPIFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A I+ L++A + L+ D R+++E A ++VG +
Sbjct: 178 SSVGISKAES-IEGLREAIALALK-YDSRILIE------QGVVAREIEVGLLGNTKVAST 229
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y+ KY+ +++ P + + +R A F+
Sbjct: 230 LPGEV-----------IKDVAFYDYQAKYI-DNKISMAIPATIDEGITSQMRYFAEQAFK 277
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G C +R D +FL E G + ++N + G Q S
Sbjct: 278 AIGACGLSRCD-FFL----------------AEDGNLYLNELNTMPGFTQWSMYPLLWDN 320
Query: 440 VGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S+++ ++ A F S+
Sbjct: 321 MGLSYSDLIEELVSLAEEMFQKRESH 346
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E++A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 84 EDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAMDKITTKRVLE---SAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+N V + + L+ I + L+ + VKPA G S G+++ E L
Sbjct: 141 PQVNYTVYIEGNDLEDCITETLETLSFP-----IFVKPANMGSSVGISKAESIEGL 191
>gi|417092613|ref|ZP_11957229.1| D-alanine--D-alanine ligase [Streptococcus suis R61]
gi|353532292|gb|EHC01964.1| D-alanine--D-alanine ligase [Streptococcus suis R61]
Length = 348
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 169/397 (42%), Gaps = 71/397 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Q +S TP+ D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQTGD---FVKTQEFSQTPSA-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGK----VVVKP 256
A DK + G VP +++G ++ +K+ GK V VKP
Sbjct: 124 VAMDKITTKRILESAGIAQVPYVAVIEGENID----------DKIAEIEGKLTYPVFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A + L+KA + + D RV+VE G +
Sbjct: 174 ANMGSSVGISKAED-LAGLRKALDLAFK-YDSRVLVE-----------------QGVNAR 214
Query: 317 PVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
E+E+ G+ DV+ KD A ++Y KY+ ++ P + +++
Sbjct: 215 -------EIEVGLLGNADVKTTLPGEVVKDVAFYDYDAKYI-DNKITMEIPAKIDESIMD 266
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
++R+ A+ F+ G C +R D +FL TE G I ++N + G
Sbjct: 267 TMRDNAAKAFRAFGGCGLSRCD-FFL----------------TEDGDIFLNELNTMPGFT 309
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
Q S +G ++ +++ ++ A F S+
Sbjct: 310 QWSMYPLLWDNMGLAYPDLIEELVRLAKEMFEKRESH 346
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 114/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 84 EEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRILES---AGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I +I +LT + VKPA G S G+++ AEDL
Sbjct: 141 AQVPYVAVIEGENIDDKIAEIEGKLTY-----PVFVKPANMGSSVGISK---AEDLAGLR 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
KAL+ L F + D + Q N
Sbjct: 193 KALD---------------------------LAF----KYDSRVLVEQGVNAR------- 214
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ + K+ I + P +
Sbjct: 215 ------EIEVGLLGNA-DVKTTLPGEVVKDVA-FYDYDAKYIDNK-ITMEIPAK--IDES 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+D + A G SR D F+ D G++ + E+NT+PG T
Sbjct: 264 IMDTMRDNAAKAFRAFGGCGLSRCDFFLTED-GDIFLNELNTMPGFT 309
>gi|223932693|ref|ZP_03624692.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591]
gi|330832452|ref|YP_004401277.1| D-alanine--D-alanine ligase [Streptococcus suis ST3]
gi|386583713|ref|YP_006080116.1| D-alanine--D-alanine ligase [Streptococcus suis D9]
gi|223898663|gb|EEF65025.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591]
gi|329306675|gb|AEB81091.1| D-alanine--D-alanine ligase [Streptococcus suis ST3]
gi|353735859|gb|AER16868.1| D-alanine--D-alanine ligase [Streptococcus suis D9]
Length = 348
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 169/397 (42%), Gaps = 71/397 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Q +S TP+ D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGD---FIKTQEFSQTPSA-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGK----VVVKP 256
A DK + G VP +++G ++ +K+ GK V VKP
Sbjct: 124 VAMDKITTKRVLESAGISQVPYVAVIEGENID----------DKIAEIEGKLTYPVFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A + L KA + + D RV+VE G +
Sbjct: 174 ANMGSSVGISKAED-LAGLHKALDLAFK-YDSRVLVE-----------------QGVNAR 214
Query: 317 PVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
E+E+ G+ DV+ KD A ++Y KY+ ++ P + +++
Sbjct: 215 -------EIEVGLLGNADVKTTLPGEVVKDVAFYDYDAKYI-DNKITMEIPAKIDEAIMD 266
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
++R+ A+ F+ +G C +R D +FL TE G I ++N + G
Sbjct: 267 TMRDNAAKAFRAIGGCGLSRCD-FFL----------------TEDGDIFLNELNTMPGFT 309
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
Q S +G ++ +++ ++ A F S+
Sbjct: 310 QWSMYPLLWDNMGLAYPDLIEELVRLAKEMFEKRESH 346
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 115/287 (40%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 84 EEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLES---AGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I +I +LT + VKPA G S G+++ AEDL
Sbjct: 141 SQVPYVAVIEGENIDDKIAEIEGKLTY-----PVFVKPANMGSSVGISK---AEDLAGLH 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
KAL+ L F + D + Q N
Sbjct: 193 KALD---------------------------LAF----KYDSRVLVEQGVNAR------- 214
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ + K+ I + P +
Sbjct: 215 ------EIEVGLLGNA-DVKTTLPGEVVKDVA-FYDYDAKYIDNK-ITMEIPAK--IDEA 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+D + A+ G SR D F+ D G++ + E+NT+PG T
Sbjct: 264 IMDTMRDNAAKAFRAIGGCGLSRCDFFLTED-GDIFLNELNTMPGFT 309
>gi|381178929|ref|ZP_09887796.1| D-alanine--D-alanine ligase [Treponema saccharophilum DSM 2985]
gi|380769169|gb|EIC03141.1| D-alanine--D-alanine ligase [Treponema saccharophilum DSM 2985]
Length = 375
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 164/396 (41%), Gaps = 45/396 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDD--LLVRCYYIDRNLNAYAISSAQVYSNT 135
+R+ L+ GG S E ISL SA ++ +I G++ +L+ R +++ ++
Sbjct: 1 MRIALLYGGKSGEHEISLVSASAIARNISGENEIVLIAITKDGRWFMQPETELSRIKADE 60
Query: 136 PADFDF-----KLESLAQGFGSLSEFA-EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
A F+ + S+ G G+ S F+ +D FP +HG +GEDG IQ + E N
Sbjct: 61 KAKFEIIEDESQAVSVIPGGGTKSAFSVGGRTIAIDCAFPVLHGTYGEDGTIQGLFEMVN 120
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
+P+VG + A DK +++ G VP ++ S++ +S+ + + +
Sbjct: 121 IPYVGCSTLASAITMDKEKTKSALAQAGIPVVPGICVRRSDIADSKRYDEILE-----EA 175
Query: 250 GKV----VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFT 303
GK+ VKP AGSS G + A D L+ G I+E DD++++E + E
Sbjct: 176 GKIGYPLFVKPCSAGSSDGASKA----DDLRHLNGAIIEAFNWDDKILIEKAVN-AREIE 230
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
V + D +L G ++ K ++Y KY P P
Sbjct: 231 CSVTGNPTTDDGRCAA-----EKLTAYGPGEIVPKHVFYDYDAKYNDPDGADLLIPANLP 285
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ IR A F L LC +R+D +F+ T + +IN
Sbjct: 286 DARLEEIRTLAKKAFAALDLCGLSRVD-FFIDRDTDA---------------LYLNEINT 329
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
I G S + K G + + +I A +RF
Sbjct: 330 IPGFTSISMFPKMCEKFGLGFTALTTLLIDEAIARF 365
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 113/287 (39%), Gaps = 57/287 (19%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG GEDGT+Q L E +PY G +AS MDK T A LA G+ +
Sbjct: 99 FPVLHGTYGEDGTIQGLFEMVNIPYVGCSTLASAITMDKEKTKSA---LAQAGIPVVPGI 155
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
R+ D+ + D E K+ L VKP G S G ++ A+DL A+
Sbjct: 156 CVRRSDIADSKRYDEILEEAGKIG-YPLFVKPCSAGSSDGASK---ADDLRHLNGAI--- 208
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
IE N +ILI E V EI S D
Sbjct: 209 ---------------IEAFNWDDKILI-EKAVNAREIECSVTGNPTTDD----------- 241
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDIL------SLEEKFQGGTGINLTPPPASIMSTE 872
G+C + +T G+I+ + K+ G +L P + +
Sbjct: 242 -------GRCAA-----EKLTAYGPGEIVPKHVFYDYDAKYNDPDGADLLIP--ANLPDA 287
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L++ + + AL L G SR+D F++ D + + E+NT+PG T
Sbjct: 288 RLEEIRTLAKKAFAALDLCGLSRVDFFIDRDTDALYLNEINTIPGFT 334
>gi|418018436|ref|ZP_12657992.1| D-alanyl-alanine synthetase A [Streptococcus salivarius M18]
gi|345527285|gb|EGX30596.1| D-alanyl-alanine synthetase A [Streptococcus salivarius M18]
Length = 348
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 166/396 (41%), Gaps = 69/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV- 319
SS+G++ A E SE A +D+ +D ++
Sbjct: 178 SSVGISKA----------------------------ENESELRA-AIDLALKYDSRILIE 208
Query: 320 --LLPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
++ E+E+ G+ +++ D A ++Y+ KY+ ++ P P V+
Sbjct: 209 QGVVAREIEVGILGNTNIKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPAHVPAEVMTQ 267
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A+ F+ LG C AR D +FL TE G I ++N + G Q
Sbjct: 268 MRAYAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQ 310
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S++++ ++ F S+
Sbjct: 311 WSMYPLLWENMGLSYSDLIKELVALGQEMFDKRESH 346
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-G 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ ++ G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMT----KHILEVAG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L+ + + +LT + VKPA G S G+++
Sbjct: 140 VPQVAYTVFIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|422846204|ref|ZP_16892887.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK72]
gi|325688255|gb|EGD30274.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK72]
Length = 353
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 165/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER IS+ SA SV+ + D V+ Y+I ++ A ++ +
Sbjct: 10 RLILLYGGRSAEREISVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPVADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDMSRKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENRAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG AR D ++ TE +
Sbjct: 263 AKIPEEVVSLMRQNAEAAFRALGGLGLARCDFFY-----------------TEDSQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G S+ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAF 345
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 123/316 (38%), Gaps = 66/316 (20%)
Query: 609 FTGFDIADELPMRHSINEWIKLAK-----ENQATVFIAVHGGIGEDGTLQSLLEAEGVPY 663
F +ADE M ++ + + K E+ A VF +HG +GEDG++Q LE +PY
Sbjct: 60 FEAKPVADEKLMTNATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPY 119
Query: 664 TGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723
G +++S MDK+ T L G+ + + L+ I +I +LT
Sbjct: 120 VGCNILSSSLAMDKITTKRVLES---AGIAQVPYVALVDGEDLEQKIQEIEEKLTY---- 172
Query: 724 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 783
+ KP+ G S G+++ S +RA
Sbjct: 173 -PVFTKPSNMGSSVGISK------------------------SENRA------------- 194
Query: 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES 843
E+ S K R++ + EI VG++G + S +P VK+
Sbjct: 195 ----------ELRASLDLAFKYDSRVLVEQGVTAREIEVGLLGNV-DVKSTLPGEVVKDV 243
Query: 844 GDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD 903
E K+ I + P + E + +Q E AL G +R D F D
Sbjct: 244 A-FYDYEAKYIDNK-ITMDIPAK--IPEEVVSLMRQNAEAAFRALGGLGLARCDFFYTED 299
Query: 904 NGEVLIIEVNTVPGMT 919
+ +V + E+NT+PG T
Sbjct: 300 S-QVFLNELNTMPGFT 314
>gi|116628273|ref|YP_820892.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMD-9]
gi|386087183|ref|YP_006003057.1| D-alanine--D-alanine ligase [Streptococcus thermophilus ND03]
gi|387910285|ref|YP_006340591.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus
MN-ZLW-002]
gi|122267132|sp|Q03JC6.1|DDL_STRTD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|116101550|gb|ABJ66696.1| D-alanine--D-alanine ligase [Streptococcus thermophilus LMD-9]
gi|312278896|gb|ADQ63553.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
thermophilus ND03]
gi|387575220|gb|AFJ83926.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus
MN-ZLW-002]
Length = 348
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 164/379 (43%), Gaps = 61/379 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS 261
A DK + G VP G E E V L+ + V VKP GS
Sbjct: 124 VAMDKIMTKRILEVAG---VPQVAYTG--YIEGEDLEAAVAETLEKLTFPVFVKPANMGS 178
Query: 262 SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321
S+G++ A L+ A + L+ D R+++E +G ++
Sbjct: 179 SVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------VV 212
Query: 322 PTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 213 AREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRAY 271
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 272 AAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSMY 314
Query: 434 FQQASKVGFSHSNILRTII 452
+G S+S++++ ++
Sbjct: 315 PLLWENMGLSYSDLIKELV 333
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T L GV
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMTKRILEV---AGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + + L+ + + +LT + VKPA G S G+++
Sbjct: 141 PQVAYTGYIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|55821559|ref|YP_140001.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMG
18311]
gi|81560260|sp|Q5M355.1|DDL_STRT2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|55737544|gb|AAV61186.1| D-alanine-D-alanine ligase [Streptococcus thermophilus LMG 18311]
Length = 348
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 167/380 (43%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKRILEVAGVPQVAYTVYIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G S+S++++ ++
Sbjct: 314 YPLLWENMGLSYSDLIKELV 333
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T L GV
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMTKRILEV---AGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ V + + L+ + + +LT + VKPA G S G+++
Sbjct: 141 PQVAYTVYIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|408789839|ref|ZP_11201480.1| D-alanine--D-alanine ligase [Lactobacillus florum 2F]
gi|408520861|gb|EKK20883.1| D-alanine--D-alanine ligase [Lactobacillus florum 2F]
Length = 377
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 167/403 (41%), Gaps = 76/403 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR------NLNAYAI----S 127
L V LI GG S+E +S SA ++ D + + V + + R + ++ + S
Sbjct: 5 LHVALIFGGDSSEHDVSKRSAHNIYDAMDQNKYDVSLFLVTRSGIILSDADSRKVFAGES 64
Query: 128 SAQVYSNT---PADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQE 183
QV +N PADF L+ E + +D+ FP IHG GEDG IQ
Sbjct: 65 EEQVIANAQQKPADF------------PLAPIMELNSVKKIDVFFPIIHGNLGEDGTIQG 112
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L P+VG+G+ A A+DK +++ G L+ + N + +T
Sbjct: 113 LLRLLKTPYVGSGTMASAMAYDKDITKKLLNECGVRNTKYVLITAA--NRRQWDYQQLTE 170
Query: 244 KLDPNSGKVVVKPTRAGSSIGV-------TVAYGVIDSLKKAKGIILEGIDDRVVVELFL 296
L NS + +KP R GSSIG+ G+ D+ + DD++++E +
Sbjct: 171 HL--NSTTLFLKPARQGSSIGIHQINNQDQYEAGLEDAFR---------YDDKILIEEAI 219
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
EG E +L + HP + G++ V + D + Y K++ QV +
Sbjct: 220 EGPEEVEISILG-----NEHP--------QASKLGAIKVPKDDGFYTYDNKFVDASQVEF 266
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P + P V I E A ++ L L ARID FL S + T Y
Sbjct: 267 TIPVQLPDEVTAEITEMALKAYRELELKGMARID--FL------VSKNLTPY-------- 310
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
F ++N + G S Q G S+S ++ +I A F
Sbjct: 311 -FGEVNTLPGFTNISLYPQLWEASGISYSELIDRLIQLAQDEF 352
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 104/467 (22%), Positives = 164/467 (35%), Gaps = 127/467 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGGD+SE VS S N++ MD N D
Sbjct: 7 VALIFGGDSSEHDVSKRSAHNIY-----------------------DAMDQNKYD----- 38
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ LV R + I + R F QV+ +
Sbjct: 39 -----VSLFLVTR-------SGIILSDADSRKVFAGESEEQVIAN--------------- 71
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
A + P + ++L + VF + HG +GEDGT+Q LL PY G G MAS
Sbjct: 72 -AQQKPADFPLAPIMELNSVKKIDVFFPIIHGNLGEDGTIQGLLRLLKTPYVGSGTMASA 130
Query: 673 TCMDKVATSLALNH--LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
DK T LN + + + I RR+ D + +LT L TL +KP
Sbjct: 131 MAYDKDITKKLLNECGVRNTKYVLITAANRRQWD---------YQQLTEHLNSTTLFLKP 181
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790
AR G S G+ ++ + Y LE+ F
Sbjct: 182 ARQGSSIGIHQINNQDQ---YEAGLEDA------------------------------FR 208
Query: 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 850
D+IL E+ + ++G S + ++ V + + +
Sbjct: 209 YDDKILIEEAIEGPE-------------EVEISILGNEHPQASKLGAIKVPKDDGFYTYD 255
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGE 906
KF + + T P + D+ I +A L+L+G +RID V+ N
Sbjct: 256 NKFVDASQVEFTIP------VQLPDEVTAEITEMALKAYRELELKGMARIDFLVS-KNLT 308
Query: 907 VLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
EVNT+PG T + ++ L E + + +++ L + F+
Sbjct: 309 PYFGEVNTLPGFT--NISLYPQLWEASGISYSELIDRLIQLAQDEFV 353
>gi|259503673|ref|ZP_05746575.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
gi|259168392|gb|EEW52887.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
Length = 377
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 179/399 (44%), Gaps = 64/399 (16%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYAISSAQV 131
+ LRV L+ GG S+E +S SA ++ D + D V + ++ NAY S ++
Sbjct: 3 KKLRVALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAY---SQRI 59
Query: 132 YSNTPADFDFKLESLAQGFGSLS---EFAEHLAAN----VDIVFPTIHGRFGEDGGIQEV 184
+ P D + +A + + A +A N +D +P IHG GEDG +Q +
Sbjct: 60 FDGEPED-----QVVADAYQHMDLDRPLAPIMALNELEAIDFFYPVIHGNLGEDGTVQGL 114
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
+ P+VG+G A +FDK +++ G P LL + N++E S W +
Sbjct: 115 FKLLKKPYVGSGISASALSFDKDLTKKMLNEAGIRNTPYVLL--TPENQAEYS-W---GR 168
Query: 245 LDPNSGKVV-VKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
L+ G ++ +KP R GSS+G VT A +LK A D +V+ E L+
Sbjct: 169 LEEELGNLIFIKPARQGSSVGIHRVTNAEEYAAALKDAF-----KYDFKVLAEKGLDRPQ 223
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E +L + HPV G+V V + D ++Y K++ V + P
Sbjct: 224 EIEISILG-----NEHPVA--------SKLGAVRVPKDDPFYDYENKFVDASGVVFELPV 270
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P + + I E A ++ LG+ +RID FL S ++ SE +T G FT+
Sbjct: 271 KLPQYLTDEITEMALKAYRVLGMKGLSRID--FLVDSNNIPYLSEP---NTLPG---FTN 322
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
I+L M + S G S+S+++ +I + F
Sbjct: 323 ISLYPQMWEVS---------GISYSDLIDRLIELGLAEF 352
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 105/284 (36%), Gaps = 63/284 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+ +HG +GEDGT+Q L + PY G G+ AS DK T LN
Sbjct: 98 YPVIHGNLGEDGTVQGLFKLLKKPYVGSGISASALSFDKDLTKKMLNEAG---------- 147
Query: 699 VRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+R +L TP W L +L + +KPAR G S G+ R+ AE+ Y AL
Sbjct: 148 IRNTPYVLLTPENQAEYSWGRLEEEL-GNLIFIKPARQGSSVGIHRVTNAEE---YAAAL 203
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
++ + L KG
Sbjct: 204 KDAF-------------------------------------------KYDFKVLAEKGLD 220
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
R EI + ++G + S + +V V + E KF +G+ P + D
Sbjct: 221 RPQEIEISILGNEHPVASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVK--LPQYLTD 278
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + L ++G SRID V+ +N L E NT+PG T
Sbjct: 279 EITEMALKAYRVLGMKGLSRIDFLVDSNNIPYL-SEPNTLPGFT 321
>gi|339641006|ref|ZP_08662450.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus sp.
oral taxon 056 str. F0418]
gi|339454275|gb|EGP66890.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus sp.
oral taxon 056 str. F0418]
Length = 348
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 163/397 (41%), Gaps = 83/397 (20%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ + D LV+ Y+I ++ A + ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDRFLVKTYFITKDGDFIQTQKFEAKPAADEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D K++ S+ E A +VFP +HG GEDG IQ LE +P+V
Sbjct: 68 NATVDMSRKIKP--------SDIYEEGA----VVFPVLHGPMGEDGSIQGFLEVLKMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G + A DK + G VP L E E ++ + KL + V
Sbjct: 116 GCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TYPVF 170
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
KP+ GSS+G++ + E +E A LD+ +
Sbjct: 171 TKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLAFKY 201
Query: 314 DCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRF 362
D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 202 DSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIPANI 260
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P V+ +R+ A + F+ LG +R D ++ TE G + ++N
Sbjct: 261 PEEVVGLMRQNAEVAFRALGGLGLSRCDFFY-----------------TEDGQVFLNELN 303
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ G Q S +G ++ +++ ++G A F
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 340
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 141 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 184
>gi|224531899|ref|ZP_03672531.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
valaisiana VS116]
gi|224511364|gb|EEF81770.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
valaisiana VS116]
Length = 361
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 169/396 (42%), Gaps = 66/396 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA + L + D + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYGIYLTLLDLDKYNIYPVYIDKCTGIWYLLESVSDPPKPINID 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG FA + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPVVSLLPGFGI---FANNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP-------SFLLQGSEVNE--SELSNWFVTNKLDPNSG 250
+ +KY L + VP + L E+ E+ +
Sbjct: 124 SAISSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEIKRDVKEVLGY----------- 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLD 308
V++KP GSSIG+ VAY S + + I E + D +V+E F+E
Sbjct: 173 PVIIKPAVLGSSIGINVAY----SENQIESFIKESLKYDLTIVIEKFIEARE-------- 220
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIV 365
+C V+ ++++ G V V+ D IF +Y KY +P + ++ P
Sbjct: 221 ----IECS--VIGNEKIKIFSPGEVVVQ--DFIFYDYDAKYSVIPGNSIIFNIPAYLETN 272
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ +I+E A L+++ LGL AR+D +F+ + GTI +IN I
Sbjct: 273 QLLTIKEYAFLVYKNLGLRGMARVD-FFVEKKS---------------GTIYLNEINTIP 316
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
G S + S G +++ +I +A F N
Sbjct: 317 GFTDISMFAKMCSHDGLQFKDLVDNLIDYAFQSFSN 352
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 101/283 (35%), Gaps = 53/283 (18%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG GEDG +Q +L+ +P G G+M S +K L L V I
Sbjct: 90 VVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAISSNKYFCKLLLKSFNIPLVPFIG 149
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R+ + L +I ++ L + +KPA G S G+ + ++K
Sbjct: 150 --FRQYDYFLDKE--EIKRDVKEVLGYPVI-IKPAVLGSSIGINVAYSENQIESFIKESL 204
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ L I + E F+E
Sbjct: 205 KYDLTI----------------------VIEKFIEAR----------------------- 219
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI VIG + P V + + K+ G ++ + + T L
Sbjct: 220 --EIECSVIGN-EKIKIFSPGEVVVQDFIFYDYDAKYSVIPGNSIIFNIPAYLETNQLLT 276
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K+ L+ L L G +R+D FV +G + + E+NT+PG T
Sbjct: 277 IKEYAFLVYKNLGLRGMARVDFFVEKKSGTIYLNEINTIPGFT 319
>gi|253752073|ref|YP_003025214.1| D-alanine--D-alanine ligase [Streptococcus suis SC84]
gi|253753898|ref|YP_003027039.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7]
gi|253755227|ref|YP_003028367.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
gi|386580247|ref|YP_006076652.1| D-alanine--D-alanine ligase [Streptococcus suis JS14]
gi|386582271|ref|YP_006078675.1| D-alanine--D-alanine ligase [Streptococcus suis SS12]
gi|386588457|ref|YP_006084858.1| D-alanine--D-alanine ligase [Streptococcus suis A7]
gi|389856273|ref|YP_006358516.1| D-alanine--D-alanine ligase [Streptococcus suis ST1]
gi|403061829|ref|YP_006650045.1| D-alanyl-alanine synthetase A [Streptococcus suis S735]
gi|251816362|emb|CAZ51993.1| D-alanine--D-alanine ligase [Streptococcus suis SC84]
gi|251817691|emb|CAZ55439.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
gi|251820144|emb|CAR46476.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7]
gi|319758439|gb|ADV70381.1| D-alanine--D-alanine ligase [Streptococcus suis JS14]
gi|353734417|gb|AER15427.1| D-alanine--D-alanine ligase [Streptococcus suis SS12]
gi|353739991|gb|AER20998.1| D-alanine--D-alanine ligase [Streptococcus suis ST1]
gi|354985618|gb|AER44516.1| D-alanine--D-alanine ligase [Streptococcus suis A7]
gi|402809155|gb|AFR00647.1| D-alanyl-alanine synthetase A [Streptococcus suis S735]
Length = 348
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 169/397 (42%), Gaps = 71/397 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Q +S TP+ D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGD---FIKTQEFSQTPSA-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGK----VVVKP 256
A DK + G VP +++G ++ +K+ GK V VKP
Sbjct: 124 VAMDKITTKRVLESAGISQVPYVAVIEGENID----------DKIAEIEGKLTYPVFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A + L+KA + + D RV+VE G +
Sbjct: 174 ANMGSSVGISKAED-LAGLRKALDLAFK-YDSRVLVE-----------------QGVNAR 214
Query: 317 PVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
E+E+ G+ DV+ KD A ++Y KY+ ++ P + +++
Sbjct: 215 -------EIEVGLLGNADVKTTLPGEVVKDVAFYDYDAKYI-DNKITMEIPAKIDESIMD 266
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+R+ A+ F+ +G C +R D +FL TE G I ++N + G
Sbjct: 267 IMRDNAAKAFRAIGGCGLSRCD-FFL----------------TEDGDIFLNELNTMPGFT 309
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
Q S +G ++ +++ ++ A F S+
Sbjct: 310 QWSMYPLLWDNMGLAYPDLIEELVRLAKEMFEKRESH 346
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 84 EEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLES---AGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I +I +LT + VKPA G S G+++ AEDL
Sbjct: 141 SQVPYVAVIEGENIDDKIAEIEGKLTY-----PVFVKPANMGSSVGISK---AEDLAGLR 192
Query: 753 KALE 756
KAL+
Sbjct: 193 KALD 196
>gi|386345279|ref|YP_006041443.1| D-alanine--D-alanine ligase [Streptococcus thermophilus JIM 8232]
gi|339278740|emb|CCC20488.1| D-alanine-D-alanine ligase [Streptococcus thermophilus JIM 8232]
Length = 348
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 164/379 (43%), Gaps = 61/379 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRVVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS 261
A DK + G VP G E E V L+ + V VKP GS
Sbjct: 124 VAMDKIMTKRILEVAG---VPQVAYTG--YIEGEDLEAAVAETLEKLTFPVFVKPANMGS 178
Query: 262 SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321
S+G++ A L+ A + L+ D R+++E +G ++
Sbjct: 179 SVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------VV 212
Query: 322 PTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 213 AREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRAY 271
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 272 AAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSMY 314
Query: 434 FQQASKVGFSHSNILRTII 452
+G S+S++++ ++
Sbjct: 315 PLLWENMGLSYSDLIKELV 333
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T L GV
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMTKRILEV---AGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + + L+ + + +LT + VKPA G S G+++
Sbjct: 141 PQVAYTGYIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|358011235|ref|ZP_09143045.1| D-alanine-D-alanine ligase A [Acinetobacter sp. P8-3-8]
Length = 362
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 170/391 (43%), Gaps = 53/391 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG+I GG S+E +SL SA++++D I + ID++ + + N
Sbjct: 4 IRVGIIFGGKSSEHRVSLQSAQNIIDAIDQQKFDISLIGIDQDGGWRILDTTHYLENGN- 62
Query: 138 DFDFKLESLA------QGFGSLSEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVLEK 187
D KL SLA Q S S+ E A +D+VFP IHG GEDG +Q +L+
Sbjct: 63 --DPKLISLAPRENSDQQHTSQSQIFEIENAQGLPKIDVVFPIIHGTLGEDGALQGMLKM 120
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
++PFVG+ + DK D + + + I V FL S N E+S V N L
Sbjct: 121 LDLPFVGSDVLSSAVCMDK-DVTKRLLQGSGIAVAPFLTVHS-YNPYEISFQEVQNAL-- 176
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
V VKP GSS+GV+ + L KA E D++V++E F++G +
Sbjct: 177 -GLPVFVKPANQGSSVGVSKVENEQEYL-KALDYAFE-YDNKVLIEKFIKGRE------I 227
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
+ G + +P + EV + K + ++Y KY+ Q P
Sbjct: 228 ECGVLGNYYPKASVCGEVVV----------KSSFYSYEAKYIDNQSSEVVIPALISEEES 277
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+R+ + F+ LG AR+D +FL TE G IL ++N + G
Sbjct: 278 KKLRDISIKAFKVLGCLGLARVD-FFL----------------TEKGEILLNEVNTLPGF 320
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G S+S ++ ++ A R
Sbjct: 321 TNNSMYPKLWENTGISYSELITQLLELALER 351
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 132/317 (41%), Gaps = 66/317 (20%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--NHLADLGVLT 694
VF +HG +GEDG LQ +L+ +P+ G V++S CMDK T L + +A LT
Sbjct: 99 VVFPIIHGTLGEDGALQGMLKMLDLPFVGSDVLSSAVCMDKDVTKRLLQGSGIAVAPFLT 158
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
++ P + E+ + L VKPA G S GV+++ E+ Y+KA
Sbjct: 159 VHS---------YNPYEISFQEVQNALGLPVF-VKPANQGSSVGVSKV---ENEQEYLKA 205
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L+ E N ++ E F+ KG
Sbjct: 206 LDYAF---------------EYDNK----VLIEKFI---------------------KGR 225
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI GV+G S+ V VK S S E K+ + P +++S E
Sbjct: 226 ----EIECGVLGNYYPKASVCGEVVVKSS--FYSYEAKYIDNQSSEVVIP--ALISEEES 277
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
K + L G +R+D F+ + GE+L+ EVNT+PG T ++ ++ L E
Sbjct: 278 KKLRDISIKAFKVLGCLGLARVDFFL-TEKGEILLNEVNTLPGFTNNS--MYPKLWENTG 334
Query: 935 MYPHQFFRKVLDLGSER 951
+ + ++L+L ER
Sbjct: 335 ISYSELITQLLELALER 351
>gi|456371313|gb|EMF50209.1| D-alanine--D-alanine ligase A [Streptococcus parauberis KRS-02109]
Length = 348
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 174/385 (45%), Gaps = 47/385 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Y Q S P D +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFY---KTQELSQKPDDNEK 64
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+ + + L + ++ N +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 65 LMTNQSIEQSQLIKASDIYEENA-VVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK ++ G V + ++G++++ ++ ++ + VKP G
Sbjct: 124 VAMDKITTKHVLASAGIPQVAFTVYIEGNDLDAC------MSETMEKLQFPIFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A ++ LK+A G+ L+ D R+++E A ++VG +L
Sbjct: 178 SSVGISKAETEME-LKEAIGLALK-YDSRILIE------QGVVAREIEVG--------LL 221
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
T V+ F G +V + A ++Y+ KY+ ++ P ++ +R A F+
Sbjct: 222 GNTSVKSTFPG--EVVKDVAFYDYQAKYIDN-KITMAIPAEIDSEIVKEMRAYAEAAFKA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LG C +R D +FL TE G + ++N + G Q S +
Sbjct: 279 LGGCGLSRCD-FFL----------------TEDGHMYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRFPNLASY 465
G +S+++ ++ A F S+
Sbjct: 322 GLVYSDLIEELVKLAIEMFEKRESH 346
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T + LA G+
Sbjct: 84 EENAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTK---HVLASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ V + + L + E KLQ + VKPA G S G+++
Sbjct: 141 PQVAFTVYIEGNDLDACM----SETMEKLQF-PIFVKPANMGSSVGISK 184
>gi|387784696|ref|YP_006070779.1| D-alanine--D-alanine ligase [Streptococcus salivarius JIM8777]
gi|338745578|emb|CCB95944.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
(D-Ala-D-Ala ligase) [Streptococcus salivarius JIM8777]
Length = 348
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 170/393 (43%), Gaps = 63/393 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLRLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENEAE-LRAAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ +V+ D A ++Y+ KY+ ++ P P V+ +R
Sbjct: 212 VAREIEVGILGNTNVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPAHVPAEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S++++ ++ F S+
Sbjct: 314 YPLLWENMGLSYSDLIKELVDLGQEMFDKRESH 346
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-G 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ ++ G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLRLPYVGTNVLSSSVAMDKIMT----KHILEVAG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L+ + + +LT + VKPA G S G+++
Sbjct: 140 VPQVAYTVFIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|111115023|ref|YP_709641.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo]
gi|216263979|ref|ZP_03435973.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
afzelii ACA-1]
gi|384206698|ref|YP_005592419.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo]
gi|122956408|sp|Q0SNW3.1|DDL_BORAP RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|110890297|gb|ABH01465.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo]
gi|215980023|gb|EEC20845.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
afzelii ACA-1]
gi|342856581|gb|AEL69429.1| D-alanine--D-alanine ligase family protein [Borrelia afzelii PKo]
Length = 361
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 168/389 (43%), Gaps = 52/389 (13%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA SV L + + + YID+ + + + P D D
Sbjct: 7 LIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSAYIDKCTGIWYLLDSVSDPPKPIDTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ +KY L + VP F +++ E+ N + V+VKP
Sbjct: 124 SAISSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKR----NVKEVLGYPVIVKPA 179
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 180 VLGSSIGINVAY----SENQIESCIEEALKYDLTIVIEKFIEAREIECSIIGNEKMK--- 232
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIRE 372
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 ---IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKE 279
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A L+++ L L AR+D +F+ + GTI +IN I G S
Sbjct: 280 YAFLVYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIPGFTDISM 323
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPN 461
+ S G +++ +I +A + N
Sbjct: 324 FSKMCSHDGLQFKDLIDNLIDYAFQSYIN 352
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 107/294 (36%), Gaps = 75/294 (25%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH-----LADLG 691
VF VHG GEDG +Q +L+ +P G G++ S +K L L + +G
Sbjct: 90 VVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAISSNKYFCKLLLKSFNIPIVPFIG 149
Query: 692 VLTINKDVRRKE------DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745
+ + ++E ++L P++ VKPA G S G+ + +
Sbjct: 150 FRQYDYSLDKEEIKRNVKEVLGYPVI----------------VKPAVLGSSIGI-NVAYS 192
Query: 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
E+ +E C IE ++ E F+E EI
Sbjct: 193 EN------QIESC---------------IEEALKYDLTIVIEKFIEAREI---------- 221
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
+IG M P V + + K+ G ++
Sbjct: 222 ---------------ECSIIGN-EKMKIFSPGEVVVQDFIFYDYDAKYSVIPGNSIIFNI 265
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + T L K+ L+ L+L G +R+D FV +G + + E+NT+PG T
Sbjct: 266 PAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKSGTIYLNEINTIPGFT 319
>gi|457095003|gb|EMG25498.1| D-alanine-D-alanine ligase A [Streptococcus parauberis KRS-02083]
Length = 348
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 174/385 (45%), Gaps = 47/385 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Y Q S P D +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFY---KTQELSQKPDDNEK 64
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+ + + L + ++ N +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 65 LMTNQSIEQSQLIKASDIYEENA-VVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK ++ G V + ++G++++ ++ ++ + VKP G
Sbjct: 124 VAMDKITTKHVLASAGIPQVAFTVYIEGNDLDAC------MSETMEKLQFPIFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A ++ LK+A G+ L+ D R+++E A ++VG +L
Sbjct: 178 SSVGISKAETEME-LKEAIGLALK-YDSRILIE------HGVVAREIEVG--------LL 221
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
T V+ F G +V + A ++Y+ KY+ ++ P ++ +R A F+
Sbjct: 222 GNTSVKSTFPG--EVVKDVAFYDYQAKYIDN-KITMAIPAEIDSEIVKEMRAYAEAAFKA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LG C +R D +FL TE G + ++N + G Q S +
Sbjct: 279 LGGCGLSRCD-FFL----------------TEDGHMYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRFPNLASY 465
G +S+++ ++ A F S+
Sbjct: 322 GLVYSDLIEELVKLAIEMFEKRESH 346
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T + LA G+
Sbjct: 84 EENAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTK---HVLASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ V + + L + E KLQ + VKPA G S G+++
Sbjct: 141 PQVAFTVYIEGNDLDACM----SETMEKLQF-PIFVKPANMGSSVGISK 184
>gi|322516239|ref|ZP_08069171.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124]
gi|322125303|gb|EFX96668.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124]
Length = 348
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 169/393 (43%), Gaps = 63/393 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKHILEVAGVPQVAYTVFIEGEDLESA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENEAE-LRAAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P P V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPAHVPAEVMAQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S++++ ++ F S+
Sbjct: 314 YPLLWENMGLSYSDLIKELVALGQEMFDKRESH 346
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-G 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ ++ G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMT----KHILEVAG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L++ + + +LT + VKPA G S G+++
Sbjct: 140 VPQVAYTVFIEGEDLESAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|395760940|ref|ZP_10441609.1| D-alanine--D-alanine ligase [Janthinobacterium lividum PAMC 25724]
Length = 311
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 160/378 (42%), Gaps = 79/378 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S VL +Q R ++A+A
Sbjct: 3 KVGVLFGGSSAEREVSLMSGTGVLAALQ-----------SRGVDAHA------------- 38
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G SL+E A A D VF +HGRFGEDG +Q LE+ +P+ G+G
Sbjct: 39 FD-------TGERSLAELA---AEKFDRVFIALHGRFGEDGSLQGALEQLGIPYTGSGVM 88
Query: 199 ACRQAFDK-YDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
AC DK Y + + Q + P + + + +S+L+ L ++VKP
Sbjct: 89 ACAVGMDKVYTKMIWLMHQ--LPTPQYAVLDA---QSDLAKVAAELGL-----PLIVKPP 138
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSSIG+T S +A I +DD V+ E F++ G EFT +L G+ P
Sbjct: 139 HEGSSIGITTVNEA--SAFQAAYDIAASLDDSVLAEEFIK-GREFTVAILGKGATARALP 195
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
P E+ + QG+ ++Y+ KY T Y PP+ ++ + A
Sbjct: 196 ----PIEI-VAPQGN---------YDYQNKYF-TDDTKYFCPPQLDPAIVAEMERIAVAA 240
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
++ LG + R+D + + +F ++N GM S + A
Sbjct: 241 YRALGCEGWGRVDVLMRAADSKLF----------------LLEVNTSPGMTSHSLVPMAA 284
Query: 438 SKVGFSHSNILRTIIGHA 455
VG S+ ++ I A
Sbjct: 285 RAVGISYEDLCLEIAAGA 302
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 120/304 (39%), Gaps = 79/304 (25%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA-LNH- 686
+LA E VFIA+HG GEDG+LQ LE G+PYTG GVMA MDKV T + L H
Sbjct: 48 ELAAEKFDRVFIALHGRFGEDGSLQGALEQLGIPYTGSGVMACAVGMDKVYTKMIWLMHQ 107
Query: 687 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
VL D+ + L P++ VKP +G S G+ +
Sbjct: 108 LPTPQYAVLDAQSDLAKVAAELGLPLI----------------VKPPHEGSSIGITTV-- 149
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
N S ++ + ++ E F+
Sbjct: 150 --------------------NEASAFQAAYDIAASLDDSVLAEEFI-------------- 175
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
KG E TV ++GK + +L P V G+ + F T PP
Sbjct: 176 -------KGR----EFTVAILGKGATARALPPIEIVAPQGNYDYQNKYFTDDTKY-FCPP 223
Query: 865 ---PASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
PA + E RI + A AL EG+ R+D + + ++ ++EVNT PGMT
Sbjct: 224 QLDPAIVAEME-------RIAVAAYRALGCEGWGRVDVLMRAADSKLFLLEVNTSPGMTS 276
Query: 921 STVL 924
+++
Sbjct: 277 HSLV 280
>gi|421452988|ref|ZP_15902344.1| D-alanine--D-alanine ligase [Streptococcus salivarius K12]
gi|400181297|gb|EJO15564.1| D-alanine--D-alanine ligase [Streptococcus salivarius K12]
Length = 348
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 170/393 (43%), Gaps = 63/393 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP+D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPSD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKHILEVAGVPQVAYTVYIEGEDLEVA------VAETLEKLAFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENEAE-LRAAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P P V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPAHVPAEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S++++ ++ F S+
Sbjct: 314 YPLLWENMGLSYSDLIKELVALGQEMFEKRESH 346
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-G 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ ++ G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMT----KHILEVAG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L+ + + +L + VKPA G S G+++
Sbjct: 140 VPQVAYTVYIEGEDLEVAVAETLEKL-----AFPVFVKPANMGSSVGISK 184
>gi|445381701|ref|ZP_21427135.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus MTCC
5460]
gi|445394603|ref|ZP_21428869.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus MTCC
5461]
gi|444748890|gb|ELW73838.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus MTCC
5461]
gi|444748994|gb|ELW73936.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus MTCC
5460]
Length = 348
Score = 99.8 bits (247), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 171/385 (44%), Gaps = 73/385 (18%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLES-----LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
KL + ++Q S+ E A +VFP +HG GEDG IQ LE +P+VGT
Sbjct: 64 KLMTNDTVEVSQAIKP-SDIYEEDA----VVFPVLHGPMGEDGSIQGFLETLKLPYVGTN 118
Query: 197 SRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
+ A DK + G V + ++G ++ + V L+ + V VK
Sbjct: 119 VLSSSVAMDKIMTKRILEVAGVPQVAYTVYIEGEDLEVA------VAETLEKLTFPVFVK 172
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P GSS+G++ A L+ A + L+ D R+++E +G
Sbjct: 173 PANMGSSVGISKAENE-SELRSAIDLALK-YDSRILIE---QG----------------- 210
Query: 316 HPVVLLPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
++ E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+
Sbjct: 211 ----VVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVM 265
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+R A+ F+ LG C AR D +FL TE G I ++N + G
Sbjct: 266 TQMRAYAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGF 308
Query: 428 EQTSFLFQQASKVGFSHSNILRTII 452
Q S +G S+S++++ ++
Sbjct: 309 TQWSMYPLLWENMGLSYSDLIKELV 333
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T L GV
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMTKRILEV---AGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ V + + L+ + + +LT + VKPA G S G+++
Sbjct: 141 PQVAYTVYIEGEDLEVAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|422881808|ref|ZP_16928264.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK355]
gi|332363453|gb|EGJ41236.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK355]
Length = 353
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 164/392 (41%), Gaps = 67/392 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ + Q + TPA
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGD---FIQTQEFEATPAA 66
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + A S + + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 67 -DEKLMTNATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 125
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ A DK + G VP L E E ++ + KL + V KP+
Sbjct: 126 SSSLAMDKITTKRVLESAGISQVPYVALVDGEDVEQKIQE--IEEKL---TYPVFTKPSN 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ + E +E A LD+ +D +
Sbjct: 181 MGSSVGISKS----------------------------ENQAELRA-SLDLAFKYDSRVL 211
Query: 319 V---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
V + E+E+ G+VDV+ KD A ++Y KY+ ++ P + P V+
Sbjct: 212 VEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIPAKIPEEVV 270
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ +R+ A F+ LG +R D ++ E G + ++N + G
Sbjct: 271 SLMRQNAEAAFRALGCLGLSRCDFFY-----------------AEDGQVFLNELNTMPGF 313
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
Q S +G ++ +++ ++G A F
Sbjct: 314 TQWSMYPLLWENMGLAYPDLIEKLVGLAEKAF 345
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L V
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGISQV 148
Query: 693 ----LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
L +DV +K I +I +LT + KP+ G S G+++
Sbjct: 149 PYVALVDGEDVEQK-------IQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|422879338|ref|ZP_16925804.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1059]
gi|422929184|ref|ZP_16962126.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 29667]
gi|332366050|gb|EGJ43806.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1059]
gi|339615000|gb|EGQ19683.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 29667]
Length = 353
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 164/392 (41%), Gaps = 67/392 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ + Q + TPA
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGD---FIQTQEFEATPAA 66
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + A S + + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 67 -DEKLMTNATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 125
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ A DK + G VP L E E ++ + KL + V KP+
Sbjct: 126 SSGLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TYPVFTKPSN 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ + E +E A LD+ +D +
Sbjct: 181 MGSSVGISKS----------------------------ENQAELRA-SLDLAFKYDSRVL 211
Query: 319 V---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
V + E+E+ G+VDV+ KD A ++Y KY+ ++ P + P V+
Sbjct: 212 VEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIPAKIPEKVV 270
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ +R+ A F+ LG +R D ++ E G + ++N + G
Sbjct: 271 SLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLNELNTMPGF 313
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
Q S +G S+ +++ ++G A F
Sbjct: 314 TQWSMYPLLWENMGLSYPDLIEKLVGLAEEAF 345
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|312863893|ref|ZP_07724131.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
vestibularis F0396]
gi|311101429|gb|EFQ59634.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
vestibularis F0396]
Length = 348
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 169/393 (43%), Gaps = 63/393 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP+D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPSD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKHILEVAGVPQVAYTVYIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENEAE-LHAAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P P V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPAHVPAEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S++++ ++ F S+
Sbjct: 314 YPLLWENMGLSYSDLIKELVALGQEMFDKRESH 346
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-G 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ ++ G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMT----KHILEVAG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L+ + + +LT + VKPA G S G+++
Sbjct: 140 VPQVAYTVYIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|343127519|ref|YP_004777450.1| D-alanine--D-alanine ligase [Borrelia bissettii DN127]
gi|342222207|gb|AEL18385.1| D-alanine--D-alanine ligase family protein [Borrelia bissettii
DN127]
Length = 361
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 165/395 (41%), Gaps = 64/395 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + SN P +
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSV--SNPPKPIN 64
Query: 141 FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
+ + L F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 65 IDVLPIVSLLPGLGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124
Query: 201 RQAFDKYDASLEMSKQGFITVP-------SFLLQGSEV--NESELSNWFVTNKLDPNSGK 251
+ +KY L + VP + L EV N E+ +
Sbjct: 125 AISSNKYFCKLLLKSFDIPVVPFIGFRQHDYFLDKEEVKRNIKEVLGY-----------P 173
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
V+VKP GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 174 VIVKPAVLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNE 229
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVV 366
+ P EV +Q D IF +Y KY +P + ++ P
Sbjct: 230 KMK------IFSPGEVVVQ----------DFIFYDYDAKYSVMPGNSIIFNIPAHLETNQ 273
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ SI+E A L ++ L L AR+D +F+ T GTI +IN I G
Sbjct: 274 LLSIKEYAFLAYKNLELRGMARVD-FFVEKKT---------------GTIYLNEINTIPG 317
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
S + S G +++ +I +A + N
Sbjct: 318 FTDISMFAKMCSHEGLQFKDLVDNLIDYAFQSYIN 352
>gi|424817312|ref|ZP_18242463.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ECD227]
gi|325498332|gb|EGC96191.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ECD227]
Length = 370
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 173/395 (43%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 10 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GQWHVSDAANYLLNAD 68
Query: 135 TPADFDFK--LESLAQGFGSL------SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + SLAQ G ++ A+ L VD++FP +HG GEDG +Q +L
Sbjct: 69 DPARIALRPSATSLAQVPGKHEQQLIDAQTAQPLP-TVDVIFPIVHGTLGEDGSLQGMLR 127
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK D + + + + + F+ + N S ++ +
Sbjct: 128 VANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANRSTITFAEIEA 182
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
+L + VKP GSS+GV+ + KKA + E D +VVVE ++ G E
Sbjct: 183 QL---GLPLFVKPANQGSSVGVSKVTNEAE-YKKAVDLAFE-YDHKVVVEKGIK-GREIE 236
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + Y KY+ P P
Sbjct: 237 CAVL----GND-HPQASTCGEIVLNSD----------FYAYDTKYIDDDGAKVVVPAAIP 281
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IRE A +Q LG AR+D VF + E ++ +IN
Sbjct: 282 AEINDKIREIAVKAYQTLGCAGMARVD---------VFLTLEND--------VVINEINT 324
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + G S+++++ +I A R
Sbjct: 325 LPGFTNISMYPKLWQASGLSYTDLITRLIELALER 359
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 125/314 (39%), Gaps = 62/314 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 108 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFVT 166
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R + + E+ ++L L VKPA G S GV+++ + Y KA++
Sbjct: 167 LTRANRSTIT------FAEIEAQLGLP-LFVKPANQGSSVGVSKVTNEAE---YKKAVDL 216
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+F H +++ + +
Sbjct: 217 --------AFEYDH------------------------------------KVVVEKGIKG 232
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V+G S + + + D + + K+ G + P A + E DK
Sbjct: 233 REIECAVLGNDHPQASTCGEIVL--NSDFYAYDTKYIDDDGAKVVVPAA--IPAEINDKI 288
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 937
++ L G +R+D F+ ++N +V+I E+NT+PG T + ++ L + +
Sbjct: 289 REIAVKAYQTLGCAGMARVDVFLTLEN-DVVINEINTLPGFT--NISMYPKLWQASGLSY 345
Query: 938 HQFFRKVLDLGSER 951
++++L ER
Sbjct: 346 TDLITRLIELALER 359
>gi|422876925|ref|ZP_16923395.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1056]
gi|332361733|gb|EGJ39537.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1056]
Length = 353
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 165/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDMSRKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D ++ TE G +
Sbjct: 263 AKIPEEVVSLMRQNAETAFRALGGLGLSRCDFFY-----------------TEDGQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G ++ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|304389915|ref|ZP_07371872.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315657167|ref|ZP_07910051.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|304326808|gb|EFL94049.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315492270|gb|EFU81877.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 375
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 169/413 (40%), Gaps = 82/413 (19%)
Query: 72 ARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQV 131
++G + RV +I GG S E IS +A VLDHI R + + I+ A
Sbjct: 2 SKGEQKTRVAVIFGGRSGEHSISCATAAGVLDHID------RTRFEPVPIG---ITKAGA 52
Query: 132 YSNTPADFDFKLESLAQG--------FGSLSEFAEHL--------------AANVDIVFP 169
+ P + D QG F +L +HL +D+V P
Sbjct: 53 WVLMPDESDSLRLQDGQGAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMP 112
Query: 170 TIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL--- 226
+HG +GEDG IQ + E VP+ G G A DK A + + + G I V + +
Sbjct: 113 LLHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKV-LLEHGGIPVGRYHVISD 171
Query: 227 -----QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI 281
+ EV LS W + V VKP RAGSS+GVT +DS + +
Sbjct: 172 FDWRHRADEVPTPILS-WGL---------PVFVKPARAGSSLGVT----RVDSWQDFEAA 217
Query: 282 ILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKD 339
++ D +V+VE ++G E VL+ +G P P EV +
Sbjct: 218 VVAARRHDPKVIVEAAVQGAREIECAVLEGRAG--GAPRTTPPGEVVMV--------STP 267
Query: 340 AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTH 399
+++++ KY + V P + P V I+ A FQ LG +R+D +++P +
Sbjct: 268 GMYDFQSKYFANEAVQLQIPAQIPAGVAAQIQSYARQAFQILGGEGLSRVDFFYVPDT-- 325
Query: 400 VFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
G I+ ++N + GM S VG S+++++ +I
Sbjct: 326 --------------GEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELI 364
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 125/298 (41%), Gaps = 75/298 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q L E GVPYTG GV AS MDK + L H G + + +
Sbjct: 110 VMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKVLLEH----GGIPVGR 165
Query: 698 -------DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
D R + D + TPI+ W + VKPAR G S GV R+ +D
Sbjct: 166 YHVISDFDWRHRADEVPTPILS-W--------GLPVFVKPARAGSSLGVTRVDSWQDFEA 216
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810
V A +R H P++++ E V+
Sbjct: 217 AVVA-------------ARRHD--------PKVIV-EAAVQ------------------- 235
Query: 811 WKGNSRWVEITVGVIGKCGSMHSLMP--SVTVKESGDILSLEEKFQGGTGINLTPP---P 865
+R +E V + G+ G P V + + + + K+ + L P P
Sbjct: 236 ---GAREIECAV-LEGRAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQIPAQIP 291
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
A + + + +Q +++ EG SR+D F D GE+++ EVNT+PGMTP ++
Sbjct: 292 AGV-AAQIQSYARQAFQILGG----EGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSL 344
>gi|269797059|ref|YP_003316514.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
gi|269099244|gb|ACZ23680.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
Length = 317
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 167/384 (43%), Gaps = 83/384 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG S ER +SL S R V + ++ ++ V + +D +L
Sbjct: 6 RVLVLAGGLSHERDVSLRSGRRVAEALRSANVEVAVHDVDADL----------------- 48
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ +LA+ D+V+P +HG GEDG I++VL+ +VP+VGTG R
Sbjct: 49 ----IPALAE-------------TRPDVVWPILHGASGEDGSIRDVLDLLDVPYVGTGPR 91
Query: 199 ACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KV 252
A R A+ K A +++ G ++T+P L + EL V + + G +
Sbjct: 92 ASRIAWSKPVAKSVVARAGIDTPEYVTLPQSLFR-------ELGAQAVMSAVVDKLGLPL 144
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
VVKP+R GS++GV++ V + + G + ++E ++ G E V++ G
Sbjct: 145 VVKPSRGGSALGVSLVRTVAELPQAMVSCFAYG--EVALIERAVD-GVELAVSVVETVDG 201
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
P V + TE ++Y +Y P + Y +P R P ++
Sbjct: 202 LSTLPAVEIVTE---------------GPYDYDARYNP-GRTEYFSPARLPSSHAEAVAA 245
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A + LGL +R D L + GTI F ++N+ GM +TS
Sbjct: 246 TAIAAHEALGLRHISRTD-LILQAD----------------GTIQFLEVNVAPGMTETSL 288
Query: 433 LFQQASKVGFSHSNILRTIIGHAC 456
L Q A G+S + R+++ HA
Sbjct: 289 LPQAALAGGWSLPTLYRSVVDHAL 312
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 117/301 (38%), Gaps = 57/301 (18%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
LA+ V+ +HG GEDG+++ +L+ VPY G G AS+ K +A + +A
Sbjct: 52 LAETRPDVVWPILHGASGEDGSIRDVLDLLDVPYVGTGPRASRIAWSK---PVAKSVVAR 108
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
G+ T + + + + KL L VKP+R G + GV+ + +L
Sbjct: 109 AGIDTPEYVTLPQSLFRELGAQAVMSAVVDKLGLP-LVVKPSRGGSALGVSLVRTVAELP 167
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
+A+ C A+G E+ + E V+
Sbjct: 168 ---QAMVSCF----------AYG---------EVALIERAVDG----------------- 188
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
VE+ V V+ + S +P+V + G + ++ G +P + +
Sbjct: 189 --------VELAVSVVETVDGL-STLPAVEIVTEGP-YDYDARYNPGRTEYFSP---ARL 235
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 929
+ + AL L SR D + D G + +EVN PGMT +++L AL
Sbjct: 236 PSSHAEAVAATAIAAHEALGLRHISRTDLILQAD-GTIQFLEVNVAPGMTETSLLPQAAL 294
Query: 930 S 930
+
Sbjct: 295 A 295
>gi|422865955|ref|ZP_16912580.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1058]
gi|327489500|gb|EGF21293.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1058]
Length = 353
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 164/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDMSRKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D ++ E G +
Sbjct: 263 AKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G S+ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAF 345
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|329117509|ref|ZP_08246226.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
parauberis NCFD 2020]
gi|326907914|gb|EGE54828.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
parauberis NCFD 2020]
Length = 348
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 173/385 (44%), Gaps = 47/385 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Y Q S P D +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFY---KTQELSQKPDDNEK 64
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+ + + L + ++ N +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 65 LMTNQSIEQSQLIKASDIYEENA-VVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK ++ G V + ++G++++ ++ ++ + VKP G
Sbjct: 124 VAMDKITTKHVLASAGIPQVAFTVYIEGNDLDAC------MSETMEKLQFPIFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A ++ LK+A G+ L+ D R+++E A ++VG +L
Sbjct: 178 SSVGISKAETEME-LKEAIGLALK-YDSRILIE------QGVVAREIEVG--------LL 221
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
V+ F G +V + A ++Y+ KY+ ++ P ++ +R A F+
Sbjct: 222 GNNSVKSTFPG--EVVKDVAFYDYQAKYIDN-KITMAIPAEIDSEIVKEMRAYAEAAFKA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LG C +R D +FL TE G + ++N + G Q S +
Sbjct: 279 LGGCGLSRCD-FFL----------------TEDGHMYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRFPNLASY 465
G +S+++ ++ A F S+
Sbjct: 322 GLVYSDLIEELVKLAIEMFEKRESH 346
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T + LA G+
Sbjct: 84 EENAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTK---HVLASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ V + + L + E KLQ + VKPA G S G+++
Sbjct: 141 PQVAFTVYIEGNDLDACM----SETMEKLQF-PIFVKPANMGSSVGISK 184
>gi|298346320|ref|YP_003719007.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
gi|315654911|ref|ZP_07907816.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
gi|298236381|gb|ADI67513.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
gi|315490872|gb|EFU80492.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
Length = 375
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 169/413 (40%), Gaps = 82/413 (19%)
Query: 72 ARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQV 131
++G + RV +I GG S E IS +A VLDHI R + + I+ A
Sbjct: 2 SKGEQKTRVAVIFGGRSGEHSISCATAAGVLDHID------RTRFEPVPIG---ITKAGA 52
Query: 132 YSNTPADFDFKLESLAQG--------FGSLSEFAEHL--------------AANVDIVFP 169
+ P + D QG F +L +HL +D+V P
Sbjct: 53 WVLMPDESDSLRLQDGQGAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMP 112
Query: 170 TIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL--- 226
+HG +GEDG IQ + E VP+ G G A DK A + + + G I V + +
Sbjct: 113 LLHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKV-LLEHGGIPVGRYHVISD 171
Query: 227 -----QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI 281
+ EV LS W + V VKP RAGSS+GVT +DS + +
Sbjct: 172 FDWRHRADEVPTPILS-WGL---------PVFVKPARAGSSLGVT----RVDSWQDFESA 217
Query: 282 ILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKD 339
++ D +V+VE ++G E VL+ +G P P EV +
Sbjct: 218 VVAARRHDPKVIVEAAVQGAREIECAVLEGRAG--GAPRTTPPGEVVMV--------STP 267
Query: 340 AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTH 399
+++++ KY + V P + P V I+ A FQ LG +R+D +++P +
Sbjct: 268 GMYDFQSKYFANEAVQLQIPAQIPAGVAAQIQSYARQAFQILGGEGLSRVDFFYVPDT-- 325
Query: 400 VFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
G I+ ++N + GM S VG S+++++ +I
Sbjct: 326 --------------GEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELI 364
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 125/298 (41%), Gaps = 75/298 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q L E GVPYTG GV AS MDK + L H G + + +
Sbjct: 110 VMPLLHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKVLLEH----GGIPVGR 165
Query: 698 -------DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
D R + D + TPI+ W + VKPAR G S GV R+ +D
Sbjct: 166 YHVISDFDWRHRADEVPTPILS-W--------GLPVFVKPARAGSSLGVTRVDSWQDFES 216
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810
V A +R H P++++ E V+
Sbjct: 217 AVVA-------------ARRHD--------PKVIV-EAAVQ------------------- 235
Query: 811 WKGNSRWVEITVGVIGKCGSMHSLMP--SVTVKESGDILSLEEKFQGGTGINLTPP---P 865
+R +E V + G+ G P V + + + + K+ + L P P
Sbjct: 236 ---GAREIECAV-LEGRAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQIPAQIP 291
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
A + + + +Q +++ EG SR+D F D GE+++ EVNT+PGMTP ++
Sbjct: 292 AGV-AAQIQSYARQAFQILGG----EGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSL 344
>gi|152965331|ref|YP_001361115.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216]
gi|190359142|sp|A6W7R2.1|DDL_KINRD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|151359848|gb|ABS02851.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216]
Length = 376
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 170/405 (41%), Gaps = 66/405 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGD--DLL----------------VRCYYIDRN 120
RV ++ GG S+E IS +A VL + GD D++ R D
Sbjct: 8 RVAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTDGA 67
Query: 121 LNAYAISSAQVYSNTPADFDFK-LESL--AQGFGSLSEFAEHLAANVDIVFPTIHGRFGE 177
L + V P D D K L+ L A G +L+E E VD+V P +HG FGE
Sbjct: 68 LPEVPATGTPV--GLPLDVDTKALQRLGGAPGAPALAELGE-----VDVVLPLLHGPFGE 120
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESE 235
DG +Q +LE + +VG+G A DK L ++ QG P SF + + +
Sbjct: 121 DGTLQGLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDRDG 180
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVE 293
V +++ V VKP RAGSSIG+T + S + + E + D +VVVE
Sbjct: 181 -----VVAEVEALGYPVFVKPARAGSSIGIT----RVTSREGLAAAVAEAVSHDPKVVVE 231
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 353
L G ++ D+ G P+ LP EVE+ G D +++ KYL +
Sbjct: 232 AALVGREIECGVLEDLDGG---EPLTSLPGEVEV--VGGHD------FYDFEAKYLDSGN 280
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
V P P V+ ++R A +F+ +G AR+D + P+
Sbjct: 281 VRLTCPADLPDDVVAAVRRTAVRVFEAMGAEGLARVDLFVDPARGE-------------- 326
Query: 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I+ +IN + G S + + G + ++ +I A R
Sbjct: 327 DGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLIQLALRR 371
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 107/288 (37%), Gaps = 60/288 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGTLQ LLE Y G GV+AS MDK L L L V
Sbjct: 110 VLPLLHGPFGEDGTLQGLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQG-LPVGPWTS 168
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R+ D + +V L + VKPAR G S G+ R+ E L V
Sbjct: 169 FRARRWDTDRDGVVAEVEALGYP-----VFVKPARAGSSIGITRVTSREGLAAAVA---- 219
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
E + +P V + L
Sbjct: 220 ------------------------EAVSHDPKVVVEAALVGR------------------ 237
Query: 818 VEITVGVIGKCGS---MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI GV+ + SL V V D E K+ + LT P + + + +
Sbjct: 238 -EIECGVLEDLDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCP--ADLPDDVV 294
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGE--VLIIEVNTVPGMTP 920
++ + A+ EG +R+D FV+ GE +++ E+NT+PG TP
Sbjct: 295 AAVRRTAVRVFEAMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTP 342
>gi|340399440|ref|YP_004728465.1| D-alanine--D-alanine ligase [Streptococcus salivarius CCHSS3]
gi|338743433|emb|CCB93943.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
(D-Ala-D-Ala ligase) [Streptococcus salivarius CCHSS3]
Length = 348
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 167/372 (44%), Gaps = 47/372 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E A ++VG +L
Sbjct: 178 SSVGISKAENEAE-LRAAIDLALK-YDSRILIE------QGVVAREIEVG--------IL 221
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
T V+ G +V + A ++Y+ KY+ ++ P P V+ +R A+ F+
Sbjct: 222 GNTTVKTTNPG--EVVKDVAFYDYQAKYI-DNKITMDIPAHVPAEVMTQMRAYAAKAFRA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LG C AR D +FL TE G I ++N + G Q S +
Sbjct: 279 LGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTII 452
G S+S++++ ++
Sbjct: 322 GLSYSDLIKELV 333
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-G 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ ++ G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMT----KHILEVAG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L+ + + +LT + VKPA G S G+++
Sbjct: 140 VPQVAYTVFIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>gi|218549957|ref|YP_002383748.1| D-alanine--D-alanine ligase [Escherichia fergusonii ATCC 35469]
gi|218357498|emb|CAQ90137.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469]
Length = 364
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 175/395 (44%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GQWHVSDAANYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSL------SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + SLAQ G ++ A+ L VD++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALRPSATSLAQVPGKHEQQLIDAQTAQPLP-TVDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK D + + + + + F+ + N S ++ +
Sbjct: 122 VANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANRSTITFAEIEA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
+L + VKP GSS+GV+ + KKA + E D +VVVE ++ G E
Sbjct: 177 QL---GLPLFVKPANQGSSVGVSKVTNEAE-YKKAVDLAFE-YDHKVVVEKGIK-GREIE 230
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + Y KY+ P P
Sbjct: 231 CAVL----GND-HPQASTCGEIVLNSD----------FYAYDTKYIDDDGAKVVVPAAIP 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IRE A +Q LG AR+D + + V + T G FT+I++
Sbjct: 276 AEINDKIREIAVKAYQTLGCAGMARVDVFLTLENDVVINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G S+++++ +I A R
Sbjct: 328 YPKLWQAS---------GLSYTDLITRLIELALER 353
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 125/314 (39%), Gaps = 62/314 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFVT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R + + E+ ++L L VKPA G S GV+++ + Y KA++
Sbjct: 161 LTRANRSTIT------FAEIEAQLGLP-LFVKPANQGSSVGVSKVTNEAE---YKKAVDL 210
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+F H +++ + +
Sbjct: 211 --------AFEYDH------------------------------------KVVVEKGIKG 226
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V+G S + + + D + + K+ G + P A + E DK
Sbjct: 227 REIECAVLGNDHPQASTCGEIVL--NSDFYAYDTKYIDDDGAKVVVPAA--IPAEINDKI 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 937
++ L G +R+D F+ ++N +V+I E+NT+PG T + ++ L + +
Sbjct: 283 REIAVKAYQTLGCAGMARVDVFLTLEN-DVVINEINTLPGFT--NISMYPKLWQASGLSY 339
Query: 938 HQFFRKVLDLGSER 951
++++L ER
Sbjct: 340 TDLITRLIELALER 353
>gi|154267916|gb|ABS72052.1| VanG-like protein [Ruminococcus gauvreauii]
Length = 348
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 103/386 (26%), Positives = 156/386 (40%), Gaps = 59/386 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ +I GG S E G+SL SA SVL+++ + V I R + Y A Y P D
Sbjct: 5 RLAVIFGGNSTEYGVSLQSAFSVLENVNQEKYEVIPIGITRQGSWYRYGGA--YGKIPDD 62
Query: 139 FDFKLES-----------LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+ E G LS + E+ +D+ FP +HG+ GEDG +Q +LE
Sbjct: 63 TWMRDEKNLTPVVVHQNPAVHGILELSVW-ENRVTQLDLAFPVLHGKNGEDGTVQGLLEL 121
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLD 246
+P VG G A DK D + ++ I+VP + +LQ + + + T L
Sbjct: 122 AGIPIVGCGVLASALCMDK-DRAHRLAGAAGISVPKAVVLQKHQKCRAVVLPEDFTYPL- 179
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
VKP RAGSS G+ YG + DD V+VE ++G
Sbjct: 180 ------FVKPVRAGSSCGIAKIYGEGELDAAVSAAFCH--DDEVIVEENVDG-------- 223
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
+VG V+ + E++ G F++ KY + H P R
Sbjct: 224 FEVGCAILGMDVLTVGRVDEIELTG--------GFFDFTEKY-ALKHSRIHMPARIDAKT 274
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
I+E A ++Q LG FAR+D + PS G ++F ++N I G
Sbjct: 275 EQKIQETAKNIYQVLGCSGFARVDMFLTPS-----------------GDVVFNEVNTIPG 317
Query: 427 MEQTSFLFQQASKVGFSHSNILRTII 452
S +G S +L ++
Sbjct: 318 FTAHSRYPNMMKGIGLSFEQLLERLL 343
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 136/346 (39%), Gaps = 91/346 (26%)
Query: 619 PMRHSINE---WIKLAKENQAT----VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
P H I E W EN+ T F +HG GEDGT+Q LLE G+P G GV+AS
Sbjct: 80 PAVHGILELSVW-----ENRVTQLDLAFPVLHGKNGEDGTVQGLLELAGIPIVGCGVLAS 134
Query: 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
CMDK + LA +++ K V ++ K V + + T L VKP
Sbjct: 135 ALCMDKDRA----HRLAGAAGISVPKAVVLQKH-QKCRAVVLPEDFTY-----PLFVKPV 184
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
R G S G+A++ +L V A F
Sbjct: 185 RAGSSCGIAKIYGEGELDAAVSA---------------------------------AFCH 211
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
DE++ +N D E+ ++G + ++ ++ +G E
Sbjct: 212 DDEVI-----VEENVDGF---------EVGCAILGM--DVLTVGRVDEIELTGGFFDFTE 255
Query: 852 KFQ-GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K+ + I++ PA I + K ++ + I L GF+R+D F+ +G+V+
Sbjct: 256 KYALKHSRIHM---PARI-DAKTEQKIQETAKNIYQVLGCSGFARVDMFLT-PSGDVVFN 310
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYP------HQFFRKVLDLGSE 950
EVNT+PG T A S P M Q ++LD+ E
Sbjct: 311 EVNTIPGFT--------AHSRYPNMMKGIGLSFEQLLERLLDMYDE 348
>gi|223889230|ref|ZP_03623818.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
burgdorferi 64b]
gi|223885263|gb|EEF56365.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
burgdorferi 64b]
Length = 361
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 166/388 (42%), Gaps = 50/388 (12%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPTR 258
+ +KY L + VP G ++ L + + G V+VKP
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVP---FIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAV 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 181 LGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMK---- 232
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIREG 373
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 --IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEY 280
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A L ++ L L AR+D +F+ + GTI +IN I G S
Sbjct: 281 AFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIPGFTDISMF 324
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPN 461
+ S G +++ +I +A + N
Sbjct: 325 AKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|227524299|ref|ZP_03954348.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
gi|227088530|gb|EEI23842.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
Length = 375
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 169/393 (43%), Gaps = 52/393 (13%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI---SSAQVY 132
+ L VGLI GG S+E +S SA ++ D + D V + + +N Y + +S +V+
Sbjct: 5 KKLHVGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKN--GYFLGTKASTRVF 62
Query: 133 SNTPADFDFKLESLAQ-----GFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+ P D D + +A+ + +E +N+D+ FP IHG GEDG IQ +L
Sbjct: 63 NGEPED-DVVRQEIAKLDKSNPLAPILNLSED--SNIDVFFPIIHGNLGEDGTIQGLLRL 119
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N P+VG+G +FDK + G T LL V + + + L
Sbjct: 120 LNKPYVGSGVLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEK------YSYDSLSA 173
Query: 248 NSGKVV-VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
GK++ VKP GSS+G+ D + + D++V+VE +EG E V
Sbjct: 174 ELGKILFVKPANQGSSVGIHKVETSDDYDEAIRDAF--RYDNKVLVEEAIEGPEELEISV 231
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
L + HP+ ++V GS+ V DA + Y K++ QV + P +
Sbjct: 232 LG-----NHHPIA---SKV-----GSIKVPADDAFYTYDNKFVDASQVKFDVPVDISEAL 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ + A ++ LGL ARID FL V SE +++N + G
Sbjct: 279 SKELTKMALDSYRALGLKGMARID--FL-----VSQDSEP----------YVSEVNTLPG 321
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S Q + G S+ ++ +I A +
Sbjct: 322 FTNISLYPQLFAASGISYRELIDRLIQLANEEY 354
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 123/294 (41%), Gaps = 60/294 (20%)
Query: 628 IKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 686
+ L++++ VF + HG +GEDGT+Q LL PY G GV+ S DK T L
Sbjct: 88 LNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSGVLGSAMSFDKDITKKILK- 146
Query: 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
LA GV T R E L + ++ S K L VKPA G S G+ ++ ++
Sbjct: 147 LA--GVATT-----RYELLTPLTVEKYSYDSLSAELGKILFVKPANQGSSVGIHKVETSD 199
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806
D Y +A+ + R + + E +E E
Sbjct: 200 D---YDEAIRDAF---------RYDNKV----------LVEEAIEGPE------------ 225
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
E+ + V+G + S + S+ V + + KF + + P
Sbjct: 226 ------------ELEISVLGNHHPIASKVGSIKVPADDAFYTYDNKFVDASQVKFDVP-- 271
Query: 867 SIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +EAL K ++ L + AL L+G +RID V+ D+ E + EVNT+PG T
Sbjct: 272 -VDISEALSKELTKMALDSYRALGLKGMARIDFLVSQDS-EPYVSEVNTLPGFT 323
>gi|333905340|ref|YP_004479211.1| D-alanine--D-alanine ligase [Streptococcus parauberis KCTC 11537]
gi|333120605|gb|AEF25539.1| D-alanine--D-alanine ligase [Streptococcus parauberis KCTC 11537]
Length = 348
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 173/385 (44%), Gaps = 47/385 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Y Q S P D +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFY---KTQELSQKPDDNEK 64
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+ + + L + ++ N +V P +HG GEDG IQ LE +P+VGT +
Sbjct: 65 LMTNQSIEQSQLIKASDIYEENA-VVLPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK ++ G V + ++G++++ ++ ++ + VKP G
Sbjct: 124 VAMDKITTKHVLASAGIPQVAFTVYIEGNDLDAC------MSETMEKLQFPIFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A ++ LK+A G+ L+ D R+++E A ++VG +L
Sbjct: 178 SSVGISKAETEME-LKEAIGLALK-YDSRILIE------QGVVAREIEVG--------LL 221
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
T V+ F G +V + A ++Y+ KY+ ++ P ++ +R A F+
Sbjct: 222 GNTSVKSTFPG--EVVKDVAFYDYQAKYIDN-KITMAIPAEIDSEIVKEMRAYAEAAFKA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LG C +R D +FL TE G + ++N + G Q S +
Sbjct: 279 LGGCGLSRCD-FFL----------------TEDGHMYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRFPNLASY 465
G +S+++ ++ A F S+
Sbjct: 322 GLVYSDLIEELVKLAIEMFEKRESH 346
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A V +HG +GEDG++Q LE +PY G +++S MDK+ T + LA G+
Sbjct: 84 EENAVVLPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTK---HVLASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ V + + L + E KLQ + VKPA G S G+++
Sbjct: 141 PQVAFTVYIEGNDLDACM----SETMEKLQF-PIFVKPANMGSSVGISK 184
>gi|422871376|ref|ZP_16917869.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1087]
gi|328945544|gb|EGG39695.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1087]
Length = 353
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 166/389 (42%), Gaps = 61/389 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ + Q + TPA
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGD---FIQTQEFEATPAA 66
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + A S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 67 -DEKLMTNATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 125
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ A DK + G VP + E E ++ + KL S V KP+
Sbjct: 126 SSSLAMDKITTKRVLESAGIAQVPYVAVVDGEDLEQKIQE--IEEKL---SYPVFTKPSN 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ + D++ + + LE ++ + VL V G
Sbjct: 181 MGSSVGISKS------------------DNQEELRVSLELAFKYDSRVL-VEQGVTAR-- 219
Query: 319 VLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
E+E+ G+ DV+ KD A ++Y+ KY+ ++ P + P V+N++
Sbjct: 220 -----EIEVGLLGNADVKSSLPGEVVKDVAFYDYQAKYI-DNKITMAIPAQLPEGVVNTM 273
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R+ A F+ LG +R D ++ E G + ++N + G Q
Sbjct: 274 RQNAETAFRALGGLGLSRCDFFY-----------------AEDGQVFLNELNTMPGFTQW 316
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G ++ +++ ++G A F
Sbjct: 317 SMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 125/323 (38%), Gaps = 69/323 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L V
Sbjct: 89 EAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQV 148
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ V EDL + E+ KL KP+ G S G+++ E+L V +
Sbjct: 149 PYVA--VVDGEDLEQK-----IQEIEEKLSYPVFT-KPSNMGSSVGISKSDNQEELRVSL 200
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
E+ F S R++ +
Sbjct: 201 -----------------------------------------ELAFKYDS------RVLVE 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIM 869
EI VG++G + S +P VK+ + K+ I + P P ++
Sbjct: 214 QGVTAREIEVGLLGNA-DVKSSLPGEVVKDVA-FYDYQAKYIDNK-ITMAIPAQLPEGVV 270
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 929
+T +Q E AL G SR D F ++G+V + E+NT+PG T + ++ L
Sbjct: 271 NT-----MRQNAETAFRALGGLGLSRCD-FFYAEDGQVFLNELNTMPGFTQWS--MYPLL 322
Query: 930 SEQPPMYPHQFFRKVLDLGSERF 952
E + K++ L E F
Sbjct: 323 WENMGLAYPDLIEKLVGLAEEAF 345
>gi|224532828|ref|ZP_03673443.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23]
gi|224512217|gb|EEF82603.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23]
Length = 361
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 167/389 (42%), Gaps = 52/389 (13%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ +KY L + VP F +++ E+ N + V+VKP
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKR----NVKEALGYPVIVKPA 179
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 180 VLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMK--- 232
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIRE 372
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 ---IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKE 279
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A L ++ L L AR+D +F+ + GTI +IN I G S
Sbjct: 280 YAFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIPGFTDISM 323
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPN 461
+ S G +++ +I +A + N
Sbjct: 324 FAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|422852098|ref|ZP_16898768.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK150]
gi|325694085|gb|EGD36003.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK150]
Length = 353
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 166/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDMSRKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A + F+ LG +R D +++ E G +
Sbjct: 263 AKIPDEVVSLMRQNAEVAFRALGGLGLSRCDFFYV-----------------EDGQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G ++ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|332653072|ref|ZP_08418817.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
gi|332518218|gb|EGJ47821.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
Length = 349
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 170/394 (43%), Gaps = 73/394 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGD-------DLLVRCYYIDRNLNAYAISSAQ 130
+++ ++ GG S ER +SL+S V + ++ DL DR ++ + Q
Sbjct: 1 MKIVVLAGGLSPERNVSLSSGAMVCEALRSKGHKVALMDLFFGVEGTDRTVDPFEAPIPQ 60
Query: 131 VYSN-TPADFDFKLESLAQGFGSLSEFAE---HLAANVDIVFPTIHGRFGEDGGIQEVLE 186
+ +P D ++ S S + L A D+V+ +HG GEDG IQ L+
Sbjct: 61 AFKKVSPEAPDLVQVRASRKDTSPSAIGQGVLELCAQADVVYLALHGACGEDGRIQATLD 120
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGF---ITVPSFLLQGSEVNESELSNWFVTN 243
VP+ G+G A DK +M+K+ + PS+ V E L
Sbjct: 121 LLGVPYTGSGCLGSAIAMDK-----DMTKRLVAHKVRTPSWCT--VTVTEENLEQLMEET 173
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKA--KGIILEGIDDRVVVELFLEGGSE 301
KL VVVKP +GSSIGVT+A+ D L++ + I L G R V+E +++ G E
Sbjct: 174 KL-----PVVVKPIASGSSIGVTIAH-TKDDLRRGLEESIRLGG---RTVLEQYVK-GRE 223
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTP 359
VL+ + LP S+++ + ++Y KY P ++V P
Sbjct: 224 IQVAVLNGKA---------LP---------SIEIIPQADFYDYANKYQPGAAREVC---P 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
P + + A +F+ LGL ++R D + TE G F
Sbjct: 263 AEIPPEWEKKVGDAAVAVFEELGLSVYSRAD-----------------FIVTEDGEAYFL 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIG 453
+IN + GM TS + Q+A+ VG ++ + TI+
Sbjct: 306 EINTLPGMTPTSLVPQEAAAVGMDYATLCETIVA 339
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 119/301 (39%), Gaps = 88/301 (29%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V++A+HG GEDG +Q+ L+ GVPYTG G + S MDK T + H
Sbjct: 101 VYLALHGACGEDGRIQATLDLLGVPYTGSGCLGSAIAMDKDMTKRLVAH----------- 149
Query: 698 DVRRKEDLLKTP---IVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVY 751
++TP V + E +L +T + VKP G S GV +DL
Sbjct: 150 -------KVRTPSWCTVTVTEENLEQLMEETKLPVVVKPIASGSSIGVTIAHTKDDLR-- 200
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
+ LEE + R G + E +V
Sbjct: 201 -RGLEESI---------RLGGRT----------VLEQYV--------------------- 219
Query: 812 KGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP---PPAS 867
KG EI V V+ GK +PS+ + D K+Q G + P PP
Sbjct: 220 KGR----EIQVAVLNGKA------LPSIEIIPQADFYDYANKYQPGAAREVCPAEIPP-- 267
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
E K + L L +SR D F+ ++GE +E+NT+PGMTP++++ +
Sbjct: 268 ----EWEKKVGDAAVAVFEELGLSVYSRAD-FIVTEDGEAYFLEINTLPGMTPTSLVPQE 322
Query: 928 A 928
A
Sbjct: 323 A 323
>gi|401682325|ref|ZP_10814219.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus sp.
AS14]
gi|400184761|gb|EJO18999.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus sp.
AS14]
Length = 348
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 164/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I +N A + +
Sbjct: 5 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKNGDFIQTQEFEAKPAADEK 64
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 65 LMTNATVDISQKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 112
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 113 PYVGCNILSSGLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 167
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 168 PVFTKPSNMGSSVGISKS----------------------------ENRAELRA-SLDLA 198
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 199 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 257
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D ++ E G +
Sbjct: 258 AKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLN 300
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G ++ +++ ++G A F
Sbjct: 301 ELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 340
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 126/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 84 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITTKRVLES---AGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 141 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK----------- 184
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
S +RA E+ S K R++ +
Sbjct: 185 -------------SENRA-----------------------ELRASLDLAFKYDSRVLVE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ E K+ I + P + + E
Sbjct: 209 QGVTAREIEVGLLGNV-DVKSTLPGEVVKDVA-FYDYEAKYIDNK-ITMDIP--AKIPEE 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E AL G SR D F ++G+V + E+NT+PG T + ++ L E
Sbjct: 264 VVSLMRQNAEAAFRALGGLGLSRCD-FFYAEDGQVFLNELNTMPGFTQWS--MYPLLWEN 320
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K++ L E F
Sbjct: 321 MGLAYPDLIEKLVGLAEEAF 340
>gi|422932155|ref|ZP_16965086.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK340]
gi|339618939|gb|EGQ23529.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK340]
Length = 353
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 164/392 (41%), Gaps = 67/392 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ + Q + TPA
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGD---FIQTQEFEATPAA 66
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + A S + + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 67 -DEKLMTNATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 125
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ A DK + G VP L E E ++ + KL + V KP+
Sbjct: 126 SSGLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TYPVFTKPSN 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ + E +E A LD+ +D +
Sbjct: 181 MGSSVGISKS----------------------------ENQAELRA-SLDLAFKYDSRVL 211
Query: 319 V---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
V + E+E+ G+VDV+ KD + ++Y KY+ ++ P + P V+
Sbjct: 212 VEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVSFYDYEAKYI-DNKITMDIPAKIPEKVV 270
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ +R+ A F+ LG +R D ++ E G + ++N + G
Sbjct: 271 SLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLNELNTMPGF 313
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
Q S +G S+ +++ ++G A F
Sbjct: 314 TQWSMYPLLWENMGLSYPDLIEKLVGLAEEAF 345
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|422824045|ref|ZP_16872233.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK405]
gi|422858950|ref|ZP_16905600.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1057]
gi|324993372|gb|EGC25292.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK405]
gi|327458730|gb|EGF05078.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1057]
Length = 353
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 165/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDMSRKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A + F+ LG +R D ++ E G +
Sbjct: 263 AKIPEEVVSLMRQNAEVAFRALGGLGLSRCDFFY-----------------AEDGQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G ++ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|229820087|ref|YP_002881613.1| D-alanyl-alanine synthetase A [Beutenbergia cavernae DSM 12333]
gi|229566000|gb|ACQ79851.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333]
Length = 372
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 152/351 (43%), Gaps = 32/351 (9%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYAISSAQVYS 133
+RV ++ GG S E +S +A VL I V I R+ L A + ++
Sbjct: 6 IRVAIVFGGRSGEHAVSAATAAGVLGAIDRGKYDVVPVGITRSGEWVLAADDAGALEIRD 65
Query: 134 NTPADFDFKLES-LAQGFGS-------LSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEV 184
+ D + L FGS LS A + A VD+V P +HG FGEDG IQ +
Sbjct: 66 GHVPEVDATGDGRLLVPFGSGPAQLVVLSPGAPPNELAGVDVVLPLLHGPFGEDGTIQGM 125
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
LE VP+VG+G A DK+ + ++ G P +L S + ++
Sbjct: 126 LELAGVPYVGSGVLASAAGMDKHYMKVVLAGAGLPVGPYTVLTPSAWRRDRAA---CLDQ 182
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEF 302
+ V VKP RAGSSIG+T ++SL + I E D +V+VE + G E
Sbjct: 183 VASLGLPVFVKPARAGSSIGIT----RVESLDRLVEAIEEAQRHDPKVIVEAAIT-GREI 237
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL+ G G D P +P E+ V + ++Y KY + V P
Sbjct: 238 EVAVLE-GRG-DEPPRTTMPGEI-------VVTNAEHGFYDYEAKYFDSAGVDLRCPADL 288
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
P V + R A+ F LG AR+D ++ PS T V + T G T +
Sbjct: 289 PPGVADEARRLAAEAFDALGCEGLARVDFFYTPSGTLVVNEINTMPGFTPF 339
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 117/290 (40%), Gaps = 64/290 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTI 695
V +HG GEDGT+Q +LE GVPY G GV+AS MDK + L +G T+
Sbjct: 107 VVLPLLHGPFGEDGTIQGMLELAGVPYVGSGVLASAAGMDKHYMKVVLAGAGLPVGPYTV 166
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+ D + +D L + VKPAR G S G+ R+ E L V+A+
Sbjct: 167 LTPSAWRRD--RAACLDQVASLG-----LPVFVKPARAGSSIGITRV---ESLDRLVEAI 216
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
EE P +++ + T +
Sbjct: 217 EEAQRHDP------------------------------KVIVEAAITGR----------- 235
Query: 816 RWVEITVGVIGKCGS--MHSLMPS---VTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870
EI V V+ G + MP VT E G E K+ G++L P + +
Sbjct: 236 ---EIEVAVLEGRGDEPPRTTMPGEIVVTNAEHG-FYDYEAKYFDSAGVDLRCP--ADLP 289
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
D+ ++ +AL EG +R+D F +G +++ E+NT+PG TP
Sbjct: 290 PGVADEARRLAAEAFDALGCEGLARVD-FFYTPSGTLVVNEINTMPGFTP 338
>gi|377578801|ref|ZP_09807776.1| D-alanine--D-alanine ligase [Escherichia hermannii NBRC 105704]
gi|377539884|dbj|GAB52941.1| D-alanine--D-alanine ligase [Escherichia hermannii NBRC 105704]
Length = 366
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 165/391 (42%), Gaps = 51/391 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + I+ A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLMGIDKQ-GEWHINDASGYLLNAS 62
Query: 135 TPADFDFKL--ESLA----QGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA ++LA Q L E H + VD++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALNRSEKTLALIPGQTEQQLIETHSHASLPQVDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+G + DK A + G P L + VN S+ S V KL
Sbjct: 123 ANLPFVGSGVLGSAVSMDKDIAKRLLRDAGLAVAPFITL--TRVNRSQYSFEDVVTKL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ +KP GSS+GV+ + A + E D +VVVE T I
Sbjct: 179 -GVPMFIKPANQGSSVGVS-KVTTAGEYQTAVELAFE-FDHKVVVE---------TGI-- 224
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
VG +C VL E G + V A ++Y KY+ P +
Sbjct: 225 -VGREIEC--AVLGNDRPEASTCGEIVV--NSAFYSYDTKYIDGDAARVDVPANIAPEIN 279
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ IR A +Q L AR+D + P + + + T G FT+I++ +
Sbjct: 280 DKIRAIAIRAYQALECSGMARVDVFLTPENEVIINEINTLPG--------FTNISMYPKL 331
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
Q S G S+ ++ +I A R
Sbjct: 332 WQAS---------GMSYQQLITRLIELALER 353
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 72/319 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK +A L D G+
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVSMDK---DIAKRLLRDAGLAVAPF 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+T+ + R + + ++ +KL + +KPA G S GV+++ A + Y
Sbjct: 159 ITLTRVNRSQYS---------FEDVVTKLGVP-MFIKPANQGSSVGVSKVTTAGE---YQ 205
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A+E +F H ++ VET +
Sbjct: 206 TAVEL--------AFEFDHKVV---------------VETGIV----------------- 225
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI V+G S + V + S + K+ G + P + ++ E
Sbjct: 226 ----GREIECAVLGNDRPEASTCGEIVVNSA--FYSYDTKYIDGDAARVDVP--ANIAPE 277
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
DK + AL+ G +R+D F+ +N EV+I E+NT+PG T + ++ L +
Sbjct: 278 INDKIRAIAIRAYQALECSGMARVDVFLTPEN-EVIINEINTLPGFT--NISMYPKLWQA 334
Query: 933 PPMYPHQFFRKVLDLGSER 951
M Q ++++L ER
Sbjct: 335 SGMSYQQLITRLIELALER 353
>gi|403050416|ref|ZP_10904900.1| D-alanine-D-alanine ligase A [Acinetobacter bereziniae LMG 1003]
gi|445422157|ref|ZP_21436312.1| D-ala D-ala ligase N-terminal domain protein [Acinetobacter sp.
WC-743]
gi|444756827|gb|ELW81365.1| D-ala D-ala ligase N-terminal domain protein [Acinetobacter sp.
WC-743]
Length = 365
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/402 (26%), Positives = 165/402 (41%), Gaps = 69/402 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVG+I GG S+E +SL SA++++D I + ID++ + I A Y
Sbjct: 5 RVGIIFGGKSSEHRVSLQSAQNIVDAIDRQKFDLSLIGIDQD-GTWRILDATHY--LEYG 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLA---------------ANVDIVFPTIHGRFGEDGGIQE 183
D KL SLA E +HL A +D++FP IHG GEDG +Q
Sbjct: 62 HDPKLISLAA-----REQQDHLQSKPPQIFEIENAQGLAPLDVIFPIIHGTLGEDGALQG 116
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L+ ++PFVG+ + DK + G P + ++NE T
Sbjct: 117 MLKILDLPFVGSDVLSSAICMDKDVTKRLLQGSGIAVAPFLTIHAYDLNEVSFDEVQTTL 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
L V VKP GSS+GV+ I +L+ A D +V++E F++G
Sbjct: 177 GL-----PVFVKPANQGSSVGVSKVENEQEFIAALENAF-----QYDSKVLIEKFIKGRE 226
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
++ G + +P + EV + K + ++Y KY+ Q A P
Sbjct: 227 ------IECGVLGNYYPRASVCGEVVV----------KSSFYSYEAKYIDNQSSAVVIPA 270
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
N IRE + F+ LG AR+D +FL TE G I +
Sbjct: 271 PISNEQSNKIREISIKAFKVLGCFGLARVD-FFL----------------TENGDIFLNE 313
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+N + G S + G ++S ++ +I A R NL
Sbjct: 314 VNTLPGFTNNSMYPKLWEASGITYSELITQLIELALERHENL 355
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 138/318 (43%), Gaps = 68/318 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--NHLADLGVLT 694
+F +HG +GEDG LQ +L+ +P+ G V++S CMDK T L + +A LT
Sbjct: 99 VIFPIIHGTLGEDGALQGMLKILDLPFVGSDVLSSAICMDKDVTKRLLQGSGIAVAPFLT 158
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
I+ DL + + E+ + L VKPA G S GV+++ E+ ++ A
Sbjct: 159 IH-----AYDLNEVS----FDEVQTTLGLPVF-VKPANQGSSVGVSKV---ENEQEFIAA 205
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
LE N+F ++LI E F+ KG
Sbjct: 206 LE--------NAFQY----------DSKVLI-EKFI---------------------KGR 225
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPASIMSTEA 873
EI GV+G S+ V VK S S E K+ + + P P +S E
Sbjct: 226 ----EIECGVLGNYYPRASVCGEVVVKSS--FYSYEAKYIDNQSSAVVIPAP---ISNEQ 276
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
+K ++ L G +R+D F+ +NG++ + EVNT+PG T ++ ++ L E
Sbjct: 277 SNKIREISIKAFKVLGCFGLARVDFFLT-ENGDIFLNEVNTLPGFTNNS--MYPKLWEAS 333
Query: 934 PMYPHQFFRKVLDLGSER 951
+ + ++++L ER
Sbjct: 334 GITYSELITQLIELALER 351
>gi|407004353|gb|EKE20766.1| hypothetical protein ACD_7C00490G0002 [uncultured bacterium]
Length = 355
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 113/421 (26%), Positives = 178/421 (42%), Gaps = 83/421 (19%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
M K A+ + ++ LI GG S E +SL SA V+ + + + I +N
Sbjct: 1 MKKTAKNKK--QIALIFGGQSGEHEVSLRSASQVMKALDKNKYEIIPIAITKNGYWLIGE 58
Query: 128 SAQVYSNTPADFDFKLESLAQG-------FGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
Q Y D ++ +QG F + S+ E A +DIV P +HG FGEDG
Sbjct: 59 VGQKYLE-----DNLKKANSQGGVKNSVSFKNGSKLPEKFPA-IDIVLPIMHGTFGEDGK 112
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDK-------YDASLEMSKQGFITVPSFLLQGSEVNE 233
+Q LE +P++ +G+ A A +K DA LE++K I++
Sbjct: 113 LQGALEMLGLPYIFSGTLASALAMNKRKTKIIAKDAGLEIAKDIVISIN----------- 161
Query: 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRV 290
+ N + +V+KPT GSS+G ++A ++ +KKA LE D V
Sbjct: 162 ---KKYNTANIIAELGFPIVIKPTELGSSVGTSLATSKKELVSGIKKA----LE-YGDEV 213
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
++E F++ G E T ++ D P L E+ + G F+Y+ KY
Sbjct: 214 LLEQFVK-GRELTVSIMG-----DKSPKALPVIEIIPKISG---------WFDYKAKY-E 257
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
T P + P V ++ A +F+ +G D +R D ++S+ + K
Sbjct: 258 TGGSKEVCPAKIPENVRRKVQHYAVEIFKAVGCLDLSRAD--------FIWSALDNK--- 306
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSS 470
+ F +IN I GM TS Q A G + SN L +I A R N+ +S
Sbjct: 307 -----LYFLEINTIPGMTATSLAPQAAKAAGMNFSNFLDKLIETAIRR-------NAKNS 354
Query: 471 H 471
H
Sbjct: 355 H 355
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-----VATSLALNHLADLGVLTIN 696
+HG GEDG LQ LE G+PY G +AS M+K +A L D+ V++IN
Sbjct: 103 MHGTFGEDGKLQGALEMLGLPYIFSGTLASALAMNKRKTKIIAKDAGLEIAKDI-VISIN 161
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV-KAL 755
K K +I EL + +KP G S G + ++L + KAL
Sbjct: 162 K---------KYNTANIIAELGF-----PIVIKPTELGSSVGTSLATSKKELVSGIKKAL 207
Query: 756 E---ECLL 760
E E LL
Sbjct: 208 EYGDEVLL 215
>gi|190359232|sp|A3CLS3.2|DDL_STRSV RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
Length = 348
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 164/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 5 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 64
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 65 LMTNATVDMSQKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 112
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 113 PYVGCNILSSGLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 167
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 168 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 198
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 199 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 257
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D ++ E G +
Sbjct: 258 AKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLN 300
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G S+ +++ ++G A F
Sbjct: 301 ELNTMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAF 340
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 84 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITTKRVLES---AGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 141 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 184
>gi|339478587|gb|ABE95042.1| D-alanine--D-alanine ligase [Bifidobacterium breve UCC2003]
Length = 395
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 132/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
L + GFG SLS+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 LSNADSGFGTSFVSLSDPEIHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + ++ G T P ++ +++ L + + V
Sbjct: 157 CGVFASAACMDKHYTKVVLNAAGIPTAPGIMVDARAFTAADVVAQIEAAGL---AYPLFV 213
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K LE DRV + G ++ ++ G +
Sbjct: 214 KPSRAGSSFGVT---------KVDKAEDLETQQDRVAAAIATAGEHDWKVLIEQGIDGRE 264
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 265 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 324
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 325 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 367
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G ++ ++ +I
Sbjct: 368 ISMYPKAWDATGVGYTELITRLI 390
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLNAAGIPTAPGIMV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
D R D+ ++ + L VKP+R G S GV ++ AEDL
Sbjct: 189 DAR------AFTAADVVAQIEAAGLAYPLFVKPSRAGSSFGVTKVDKAEDL 233
>gi|354722251|ref|ZP_09036466.1| D-alanyl-alanine synthetase A [Enterobacter mori LMG 25706]
Length = 366
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 171/398 (42%), Gaps = 67/398 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNTP 136
RVG++ GG SAE +SL SA++++D I V ID+ + ++Q + +N P
Sbjct: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLINANDP 64
Query: 137 ADFDFK--------LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
A + L QG + A+ LA +D++FP +HG GEDG +Q +L
Sbjct: 65 AHIALNPSETSVATVPGLVQGQFINAGNAQALA-QIDVIFPIVHGTLGEDGSLQGMLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
N+PFVG+ GS AC DK D + + + + + F+ + N + ++++L
Sbjct: 124 NLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANREKFDFAQISSQL 178
Query: 246 DPNSGKVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
+ VKP GSS+G VT D+++ A E D +VVVE ++ G E
Sbjct: 179 ---GLPLFVKPANQGSSVGVSKVTTEAQFTDAVRLA----FE-FDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C VVL ++Y KY+ + P
Sbjct: 230 ECAVLGNDFPQASTCGEVVL-----------------NSDFYSYDTKYIDDKGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
V+ + IR A +Q LG C AR+D + P + V + T G FT+
Sbjct: 273 VIDPVINDKIRAIAVEAYQALGCCGMARVDVFLTPENDVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G S+ ++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GMSYPELITRLIELALER 353
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 128/318 (40%), Gaps = 68/318 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---L 693
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L + +
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFV 159
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T+ + R K D + +++S+L L VKPA G S GV+++ T V+
Sbjct: 160 TLTRANREKFD---------FAQISSQLGLP-LFVKPANQGSSVGVSKVTTEAQFTDAVR 209
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
L F E D + Q KG
Sbjct: 210 ------------------------------LAF----EFDHKVVVEQGI---------KG 226
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
EI V+G S V + + D S + K+ G + P +++
Sbjct: 227 R----EIECAVLGNDFPQASTCGEVVL--NSDFYSYDTKYIDDKGAQVVVP--AVIDPVI 278
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
DK + AL G +R+D F+ +N +V+I E+NT+PG T + ++ L +
Sbjct: 279 NDKIRAIAVEAYQALGCCGMARVDVFLTPEN-DVVINEINTLPGFT--NISMYPKLWQAS 335
Query: 934 PMYPHQFFRKVLDLGSER 951
M + ++++L ER
Sbjct: 336 GMSYPELITRLIELALER 353
>gi|226320941|ref|ZP_03796489.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805]
gi|226233643|gb|EEH32376.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805]
Length = 361
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 167/389 (42%), Gaps = 52/389 (13%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ +KY L + VP F +++ E+ N + V+VKP
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKR----NVKEALGYPVIVKPA 179
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 180 VLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMK--- 232
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIRE 372
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 ---IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKE 279
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A L ++ L L AR+D +F+ + GTI +IN I G S
Sbjct: 280 YAFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIPGFTDISM 323
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPN 461
+ S G +++ +I +A + N
Sbjct: 324 FAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|78058364|gb|ABB17543.1| VanG2 [Enterococcus faecalis]
Length = 349
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 169/389 (43%), Gaps = 62/389 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNTP 136
R+ +I GG S E +SL SA +V ++I + I RN + Y + + + +NT
Sbjct: 5 RIAIIFGGNSTEYEVSLQSASAVFENINTKKFDIVPIGITRNGDWYHYTGKKEKIANNTW 64
Query: 137 ADFDFKLESLA-------QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ + L S+A +GF E + VD++FP +HG+ GEDG +Q + E
Sbjct: 65 FEDNENLYSVAVSQNRSVKGFIEFKE-EKFYIIKVDLIFPVLHGKNGEDGTLQGLFELAG 123
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVP---SFLLQGSEVNESELSNWFVTNKLD 246
+P VG + + DK A +S G I+VP +F G + ++
Sbjct: 124 IPVVGCDTLSSALCMDKDKAHKLVSLAG-ISVPKSVTFKFSGKKAALKKIEKEL------ 176
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
S + VKP RAGSS G+T K K LE ++L E +E IV
Sbjct: 177 --SYPLFVKPVRAGSSFGIT---------KVTKQQELEN-----AIQLAFEHDAE--VIV 218
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY-LPTQQVAYHTPPRFPI 364
+ +GF+ VL E+ + G VD + F+Y KY L + ++ + P R
Sbjct: 219 EETINGFEVGCAVLGIDELIV---GRVDEIELSSGFFDYTEKYTLKSSKI--YMPARIDA 273
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
I+E A +++ LG F+R+D ++ PS G I+F ++N I
Sbjct: 274 EAEKRIQETAVTIYKALGCSGFSRVDMFYTPS-----------------GEIVFNEVNTI 316
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIG 453
G S +G S + +L +IG
Sbjct: 317 PGFTSHSRYPNMMKGIGLSFAQMLDKLIG 345
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDGTLQ L E G+P G ++S CMDK + L L +++ K
Sbjct: 101 IFPVLHGKNGEDGTLQGLFELAGIPVVGCDTLSSALCMDKDKA----HKLVSLAGISVPK 156
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
V K K + I EL+ L VKP R G S G+ ++ ++L
Sbjct: 157 SVTFKFSGKKAALKKIEKELSY-----PLFVKPVRAGSSFGITKVTKQQEL 202
>gi|422825879|ref|ZP_16874058.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK678]
gi|324995315|gb|EGC27227.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK678]
Length = 353
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 165/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDISQKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSGLAMDKITTKRVLESAGIAQVPYVALVDGENLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D +++ E G +
Sbjct: 263 AKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYV-----------------EDGQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G S+ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAF 345
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGENLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|365825773|ref|ZP_09367724.1| hypothetical protein HMPREF0045_01360 [Actinomyces graevenitzii
C83]
gi|365257641|gb|EHM87673.1| hypothetical protein HMPREF0045_01360 [Actinomyces graevenitzii
C83]
Length = 323
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 158/359 (44%), Gaps = 76/359 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRV +I GG + ER +SL SA V ++ V + D ++ ++S + Y
Sbjct: 5 LRVAIIAGGLNHEREVSLRSAHRVARALREAGHEVNTFCPDASM----LASLRSY----- 55
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
N D+V+P +HG GEDG +Q +L VPFVGT S
Sbjct: 56 -------------------------NPDVVWPLVHGSTGEDGSLQNILLALEVPFVGTHS 90
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGKVVV 254
C++A K A + G T S L S N+ +EL + + + P +VV
Sbjct: 91 DGCQRASYKPTAKAGVRTAGVATPDSLTLPQSFFNQLGANELLDLVIAHLGLP----LVV 146
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP + GS++GV+ A V DSL+ A + D ++E+F+EG ++V D G G
Sbjct: 147 KPFQGGSALGVSYADDV-DSLRSAM-VECFAYSDNALIEVFVEGVEASVSVVRD-GDGV- 202
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
LPT VE+ GS ++Y +Y P + + P R +++RE A
Sbjct: 203 ---ARALPT-VEIVTDGS---------YDYDARYNPGRS-EFFVPARLDQARDDAVREAA 248
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
+ + LGL +R D F+ + GT F D+N++ GM +TS L
Sbjct: 249 VKVHETLGLGALSRSD--FIVDAE---------------GTPWFIDVNVVPGMTETSLL 290
>gi|125717545|ref|YP_001034678.1| D-alanyl-alanine synthetase A [Streptococcus sanguinis SK36]
gi|125497462|gb|ABN44128.1| D-ala,D-ala ligase, putative [Streptococcus sanguinis SK36]
Length = 353
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 164/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDMSQKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSGLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D ++ E G +
Sbjct: 263 AKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G S+ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAF 345
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|422849142|ref|ZP_16895818.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK115]
gi|325690163|gb|EGD32167.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK115]
Length = 353
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 164/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDMSRKIKP--------SDIYEEEA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSGLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D ++ E G +
Sbjct: 263 AKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G ++ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|384196505|ref|YP_005582249.1| D-alanine--D-alanine ligase [Bifidobacterium breve ACS-071-V-Sch8b]
gi|333109442|gb|AEF26458.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 395
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 132/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
L + GFG SLS+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 LSNADSGFGTSFVSLSDPEIHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + ++ G T P ++ +++ L + + V
Sbjct: 157 CGVFASAACMDKHYTKVVLNAAGIPTAPGIMVDARAFTAADVVAQIEVAGL---AYPLFV 213
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K LE DRV + G ++ ++ G +
Sbjct: 214 KPSRAGSSFGVT---------KVDKAEDLETQQDRVAAAIATAGEHDWKVLIEQGIDGRE 264
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 265 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 324
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 325 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 367
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G ++ ++ +I
Sbjct: 368 ISMYPKAWDATGVGYTELITRLI 390
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLNAAGIPTAPGIMV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
D R D+ ++ L VKP+R G S GV ++ AEDL
Sbjct: 189 DAR------AFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAEDL 233
>gi|417941785|ref|ZP_12585067.1| D-alanine--D-alanine ligase (D-Ala-D-Ala ligase) [Bifidobacterium
breve CECT 7263]
gi|376168027|gb|EHS86840.1| D-alanine--D-alanine ligase (D-Ala-D-Ala ligase) [Bifidobacterium
breve CECT 7263]
Length = 397
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 132/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
L + GFG SLS+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 99 LSNADSGFGTSFVSLSDPEIHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 158
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + ++ G T P ++ +++ L + + V
Sbjct: 159 CGVFASAACMDKHYTKVVLNAAGIPTAPGIMVDARAFTAADVVAQIEVAGL---AYPLFV 215
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K LE DRV + G ++ ++ G +
Sbjct: 216 KPSRAGSSFGVT---------KVDKAEDLETQQDRVAAAIATAGEHDWKVLIEQGIDGRE 266
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 267 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 326
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 327 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 369
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G ++ ++ +I
Sbjct: 370 ISMYPKAWDATGVGYTELITRLI 392
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 131 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLNAAGIPTAPGIMV 190
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
D R D+ ++ L VKP+R G S GV ++ AEDL
Sbjct: 191 DAR------AFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAEDL 235
>gi|440288831|ref|YP_007341596.1| D-alanine--D-alanine ligase [Enterobacteriaceae bacterium strain
FGI 57]
gi|440048353|gb|AGB79411.1| D-alanine--D-alanine ligase [Enterobacteriaceae bacterium strain
FGI 57]
Length = 364
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 169/394 (42%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA+++++ I V ID+ + I+ AQ Y +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GQWHINDAQNYLLNAQ 62
Query: 135 TPADFDFKLE--SLAQGFGSLS------EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + +LAQ G S E + L A +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAKIALRHSDVTLAQIPGKTSQQLINAESGQPLGA-IDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+ + DK D + + + +T+ F+ + N + +S V KL
Sbjct: 122 VANLPFVGSDVLSSAACMDK-DVTKRLLRDAGLTIAPFITL-TRSNRNRISFAEVEAKL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ ++A + E D +VVVE ++ G E V
Sbjct: 179 --GLPLFVKPANQGSSVGVSKVNSEA-QYQQAVALAFE-FDHKVVVEQGIK-GREIECAV 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C +VL + Y KY+ P P
Sbjct: 234 LGNDEPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAKVVVPAAIPA 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ + IR+ A +Q LG AR+D VF ++E + ++ +IN +
Sbjct: 277 EINDKIRDVAVQAYQTLGCSGMARVD---------VFLTAENE--------VVINEINTL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G S + G +++++ +I A R
Sbjct: 320 PGFTNISMYPKLWQASGLDYTSLITRLIELALER 353
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 18/110 (16%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK T L D G+
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVTKRLLR---DAGLTIAPF 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R + + E+ +KL L VKPA G S GV+++
Sbjct: 159 ITLTRSNRNRIS---------FAEVEAKLGLP-LFVKPANQGSSVGVSKV 198
>gi|72161037|ref|YP_288694.1| D-alanyl-alanine synthetase A [Thermobifida fusca YX]
gi|71914769|gb|AAZ54671.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
Length = 371
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 162/399 (40%), Gaps = 45/399 (11%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISS-----AQ 130
R +RV +I GG S+E IS +A SV+ I D + I R+ + +++ A
Sbjct: 5 RKIRVAVIFGGRSSEHEISCVTAGSVMSAIDTDRYDILPIGITRDGDWRLVTADPSELAI 64
Query: 131 VYSNTPA--DFDFKLESLAQGFGSLSEFAE----HLAANVDIVFPTIHGRFGEDGGIQEV 184
V PA D +L G+ E A L VD+V P +HG FGEDG IQ +
Sbjct: 65 VDGKLPAVPDSGARLALALDTPGAFLEVAPDSLPRLVGQVDVVLPLLHGPFGEDGTIQGL 124
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
LE V +VG G A + DK ++ QG T P + V +
Sbjct: 125 LELAGVRYVGAGVFASAASMDKVFMKALLTAQGLKTGPYLAVSDRAWTRHRKR---VLDN 181
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI-ILEGIDDRVVVELFLEGGSEFT 303
+ G V VKP RAGSSIG++ D+ + I D +V+VE ++ G E
Sbjct: 182 IAALGGVVFVKPARAGSSIGISRVPDATDTAAVTEAIEAARAHDPKVIVEAGIQ-GREIE 240
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL+ G P V LP E+ V E +++ KYL ++ P P
Sbjct: 241 CGVLESLDG--GEPDVSLPAEIH--------VAEGYDFYDFEAKYLSNSGLS--IPADLP 288
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V +R+ A+ F LG AR+D + YG G I +IN
Sbjct: 289 DEVTQRVRKLAAEAFDALGCEGLARVDFF---------------YGDD--GEIYINEINT 331
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+ G S Q + G + ++ +I A R L
Sbjct: 332 MPGFTPASAFPQMWAASGLDYPALVDRLIRTALVRRTGL 370
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 127/306 (41%), Gaps = 98/306 (32%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR 701
+HG GEDGT+Q LLE GV Y G GV AS MDKV K +
Sbjct: 111 LHGPFGEDGTIQGLLELAGVRYVGAGVFASAASMDKV----------------FMKALLT 154
Query: 702 KEDLLKTPIVDIWHELTSKLQCKTL----------CVKPARDGCSTGVARLCCAEDLTVY 751
+ L P + + ++ + + L VKPAR G S G++R+ A D
Sbjct: 155 AQGLKTGPYLAVSDRAWTRHRKRVLDNIAALGGVVFVKPARAGSSIGISRVPDATDTAAV 214
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
+A+E +RAH P++++ E ++ EI
Sbjct: 215 TEAIEA----------ARAHD--------PKVIV-EAGIQGREI---------------- 239
Query: 812 KGNSRWVEITVGVIGKCGSMHSL--------MPS-VTVKESGDILSLEEKFQGGTGINLT 862
+CG + SL +P+ + V E D E K+ +G+++
Sbjct: 240 ---------------ECGVLESLDGGEPDVSLPAEIHVAEGYDFYDFEAKYLSNSGLSI- 283
Query: 863 PPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 918
PA + D+ QR+ +A +AL EG +R+D F D+GE+ I E+NT+PG
Sbjct: 284 --PADLP-----DEVTQRVRKLAAEAFDALGCEGLARVDFFYG-DDGEIYINEINTMPGF 335
Query: 919 TPSTVL 924
TP++
Sbjct: 336 TPASAF 341
>gi|422860609|ref|ZP_16907253.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK330]
gi|327468992|gb|EGF14464.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK330]
Length = 353
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 162/392 (41%), Gaps = 67/392 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A Q + PA
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKD---GAFIQTQEFEAKPAA 66
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + A S + + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 67 -DEKLMTNATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 125
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ A DK + G VP L E E ++ + KL + V KP+
Sbjct: 126 SSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TYPVFTKPSN 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ + E E A LD+ +D +
Sbjct: 181 MGSSVGISKS----------------------------ENREELRA-SLDLAFKYDSRVL 211
Query: 319 V---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
V + E+E+ G+VDV+ KD A ++Y KY+ ++ P + P V+
Sbjct: 212 VEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIPAKIPEEVV 270
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ +R+ A F+ LG +R D ++ E G + ++N + G
Sbjct: 271 SLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLNELNTMPGF 313
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
Q S +G ++ +++ ++G A F
Sbjct: 314 TQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 126/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + L+ I +I +LT + KP+ G S G+++ E+L +
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISKSENREELRASL 200
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
++ F S R++ +
Sbjct: 201 -----------------------------------------DLAFKYDS------RVLVE 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ E K+ I + P + + E
Sbjct: 214 QGVTAREIEVGLLGNV-DVKSTLPGEVVKDVA-FYDYEAKYIDNK-ITMDIP--AKIPEE 268
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E AL G SR D F ++G+V + E+NT+PG T + ++ L E
Sbjct: 269 VVSLMRQNAEAAFRALGGLGLSRCD-FFYAEDGQVFLNELNTMPGFTQWS--MYPLLWEN 325
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K++ L E F
Sbjct: 326 MGLAYPDLIEKLVGLAEEAF 345
>gi|407477504|ref|YP_006791381.1| D-alanine--D-alanine ligase [Exiguobacterium antarcticum B7]
gi|407061583|gb|AFS70773.1| D-alanine--D-alanine ligase [Exiguobacterium antarcticum B7]
Length = 314
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 161/384 (41%), Gaps = 82/384 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ--GDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
++V ++ GG S ER +SLNS +SV++ ++ G D++ ++ +R +
Sbjct: 1 MKVAVLFGGISGEREVSLNSGKSVIEALESKGHDVIAVDFHPERAEDI------------ 48
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
L V++ +HG+FGEDG +Q +LE +P+ G+
Sbjct: 49 ------------------------LNLRVEVAVIALHGKFGEDGRVQALLEMAGIPYTGS 84
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
G A A DK + + K G L++ + E ++++W N P VVK
Sbjct: 85 GVLASALAMDKARSKVHFEKAGIRIARDVLIERGDDIEQKIASW---NGQFP----CVVK 137
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
P + GSS G+T+A +D +GI L D+ V++E F++ G E T VL
Sbjct: 138 PAQEGSSNGLTIA---MDEQMLRQGIDLAFTADEAVLIEQFIK-GREVTVPVLGTKGEEK 193
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PV +++ K+ ++Y KY + P +F ++++ A
Sbjct: 194 ALPV--------------IEIIPKNEFYDYESKY-AIGGSEHICPAQFDEATTQTLQDWA 238
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
L Q LG ++R D + +P S G + + N + GM TS
Sbjct: 239 VLAHQVLGCAGYSRTD-FLVPES----------------GQPVILETNTLPGMTATSLFP 281
Query: 435 QQASKVGFSHSNILRTIIGHACSR 458
A VG + ++ T I A SR
Sbjct: 282 DGARAVGIDYPELVETFIELAISR 305
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 131/287 (45%), Gaps = 66/287 (22%)
Query: 640 IAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV 699
IA+HG GEDG +Q+LLE G+PYTG GV+AS MDK + + H G+ I +DV
Sbjct: 58 IALHGKFGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKV---HFEKAGI-RIARDV 113
Query: 700 --RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R +D+ + + W+ + C VKPA++G S G LT+ A++E
Sbjct: 114 LIERGDDIEQK--IASWN---GQFPC---VVKPAQEGSSNG---------LTI---AMDE 153
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+LR G I++ E ++ E F+ KG
Sbjct: 154 QMLR---------QG-IDLAFTADEAVLIEQFI---------------------KGR--- 179
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
E+TV V+G G +L P + + + E K+ G ++ P +T+ L
Sbjct: 180 -EVTVPVLGTKGEEKAL-PVIEIIPKNEFYDYESKYAIGGSEHICPAQFDEATTQTLQDW 237
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
L L G+SR D F+ ++G+ +I+E NT+PGMT +++
Sbjct: 238 AV---LAHQVLGCAGYSRTD-FLVPESGQPVILETNTLPGMTATSLF 280
>gi|365992311|ref|NP_212334.2| D-alanine--D-alanine ligase [Borrelia burgdorferi B31]
gi|384872327|sp|O51218.2|DDL_BORBU RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|356609309|gb|AAC66589.2| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Borrelia burgdorferi
B31]
Length = 361
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 167/396 (42%), Gaps = 66/396 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP-------SFLLQGSEV--NESELSNWFVTNKLDPNSG 250
+ +KY L + VP + L E+ N E+ +
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGY----------- 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLD 308
V+VKP GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 173 PVIVKPAVLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGN 228
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIV 365
+ P EV +Q D IF +Y KY +P + ++ P
Sbjct: 229 EKMK------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETN 272
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ SI+E A L ++ L L AR+D +F+ + GTI +IN I
Sbjct: 273 QLLSIKEYAFLTYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIP 316
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
G S + S G +++ +I +A + N
Sbjct: 317 GFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|323352703|ref|ZP_08087673.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66]
gi|322121739|gb|EFX93485.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66]
Length = 353
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 163/392 (41%), Gaps = 67/392 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ + Q + PA
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGD---FIQTQEFEAKPAA 66
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + A S + + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 67 -DEKLMTNATVDMSQKIKPSDIYEDGTVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 125
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ A DK + G VP L E E ++ + KL + V KP+
Sbjct: 126 SSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TYPVFTKPSN 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ + E +E A LD+ +D +
Sbjct: 181 MGSSVGISKS----------------------------ENQAELRA-SLDLAFKYDSRVL 211
Query: 319 V---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
V + E+E+ G+VDV+ KD A ++Y KY+ ++ P + P V+
Sbjct: 212 VEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIPAKIPDEVV 270
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ +R+ A F+ LG +R D ++ E G + ++N + G
Sbjct: 271 SLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLNELNTMPGF 313
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
Q S +G ++ +++ ++G A F
Sbjct: 314 TQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGTVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|331701247|ref|YP_004398206.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929]
gi|329128590|gb|AEB73143.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929]
Length = 376
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 170/396 (42%), Gaps = 64/396 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI---SSAQVYSNT 135
+GLI GG S+E +S SA ++ D + + V + + +N Y + +S++V+
Sbjct: 8 HIGLIFGGNSSEHDVSKRSAHNIYDAMDKERYDVSLFLMTKN--GYFLDHEASSRVFDGE 65
Query: 136 PADFDFKLE----SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
P D K E L + AE +++D+ FP IHG GEDG IQ +L + P
Sbjct: 66 PEDEVAKQELAKLDLKNPLARIINLAEE--SDIDVFFPIIHGNLGEDGTIQGLLRLLHKP 123
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
+VGT +FDK D + ++ K + + EV + + + L G+
Sbjct: 124 YVGTAILGSAMSFDK-DITKKIVKLAGVPTTRY-----EVITPLTAEQYSYDSLSDELGQ 177
Query: 252 VV-VKPTRAGSSIGV-------TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
+ +KP GSS+G+ + G+ D+ + D +V++E +EG E
Sbjct: 178 TLFIKPANQGSSVGIHKVENAEEYSEGIRDAFR---------YDSKVLIEEAIEGPEELE 228
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
+L G D HP+ +++ G++ V + DA + Y K++ QV + P
Sbjct: 229 ISIL----GND-HPIA---SKI-----GAIRVPKDDAFYTYDNKFVDASQVKFDVPVDIS 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ I E ++ LGL ARID ++ S + Y +++N
Sbjct: 276 EELAQQITEMGLTTYRALGLKGMARID--------YLVSKDDKPY---------MSEVNT 318
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ G S Q + G S+S ++ +I A F
Sbjct: 319 LPGFTNISLYPQLFAASGISYSELIDRLIQLAIDEF 354
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 64/307 (20%)
Query: 617 ELPMRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+L +++ + I LA+E+ VF + HG +GEDGT+Q LL PY G ++ S
Sbjct: 77 KLDLKNPLARIINLAEESDIDVFFPIIHGNLGEDGTIQGLLRLLHKPYVGTAILGSAMSF 136
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD---IWHELTSKLQCKTLCVKPAR 732
DK T + LA GV T +V TP+ + L+ +L +TL +KPA
Sbjct: 137 DKDITK-KIVKLA--GVPTTRYEVI-------TPLTAEQYSYDSLSDEL-GQTLFIKPAN 185
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S G+ ++ AE+ + G+ + ++LI E +E
Sbjct: 186 QGSSVGIHKVENAEEYS---------------------EGIRDAFRYDSKVLI-EEAIEG 223
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
E E+ + ++G + S + ++ V + + + K
Sbjct: 224 PE------------------------ELEISILGNDHPIASKIGAIRVPKDDAFYTYDNK 259
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
F + + P +S E + + AL L+G +RID V+ D+ + + EV
Sbjct: 260 FVDASQVKFDVPVD--ISEELAQQITEMGLTTYRALGLKGMARIDYLVSKDD-KPYMSEV 316
Query: 913 NTVPGMT 919
NT+PG T
Sbjct: 317 NTLPGFT 323
>gi|291542820|emb|CBL15930.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63]
Length = 349
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 166/389 (42%), Gaps = 64/389 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISS--AQVYSNT- 135
++ +I GG S E +SL SA SV ++I D + I RN + Y + +NT
Sbjct: 5 KIAVIFGGNSTEYEVSLQSAFSVFENINHDKYDIIPIGITRNGDWYHYKGRYENIANNTW 64
Query: 136 PADFDFKLE---SLAQGFGSLSEFAE--HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
D D S++ + EF E + A ++D+VFP +HG+ GEDG +Q + E +
Sbjct: 65 SGDRDNLYPVTVSVSHSQKGIWEFDEDQYTAVHIDLVFPILHGKNGEDGTLQGMFELSGI 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN------ESELSNWFVTNK 244
P +G + A DK A +S G S + SE N E+ELS
Sbjct: 125 PVIGCNTLASALCMDKDRAHKLVSLAGVKVPKSVTFKRSEKNTALKKIETELSY------ 178
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+ VKP RAGSS G+T + E + +E E +E
Sbjct: 179 ------PLFVKPVRAGSSFGITK--------------VTEQAEINTAIESAFEHDTE--V 216
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY-LPTQQVAYHTPPRFP 363
IV + GF+ +L + ++ +++ + F+Y KY L T ++ H P R
Sbjct: 217 IVEEAIGGFEVGCAILGIDNLTVRRIDEIEL--SNGFFDYTEKYTLKTSKI--HMPARLS 272
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
++E A +++ LG FAR+D ++ PS+ I+F ++N
Sbjct: 273 PKEEKRVQETAVAIYKALGCSGFARVDMFYTPSNE-----------------IIFNEVNT 315
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTII 452
I G+ S +G S +++L +I
Sbjct: 316 IPGLTSHSRYPNMMKGIGLSFADMLDKLI 344
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGTLQ + E G+P G +AS CMDK + L L + + K
Sbjct: 101 VFPILHGKNGEDGTLQGMFELSGIPVIGCNTLASALCMDKDRA----HKLVSLAGVKVPK 156
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
V K T + I EL+ L VKP R G S G+ ++ ++ +++
Sbjct: 157 SVTFKRSEKNTALKKIETELSYP-----LFVKPVRAGSSFGITKVTEQAEINTAIES 208
>gi|78043171|ref|YP_360179.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
Z-2901]
gi|123576231|sp|Q3ACF5.1|DDL_CARHZ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|77995286|gb|ABB14185.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 312
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 159/378 (42%), Gaps = 78/378 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++G+ICGG S+ER +SL + ++ + V +DRN+
Sbjct: 1 MKIGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKIDMDRNIA--------------- 45
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
E+L + N+D F +HG++GEDG IQ +LE ++P+ G+G
Sbjct: 46 ------ETLKK-------------ENIDFAFIALHGKYGEDGAIQGLLEIMDIPYTGSGI 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN---ESELSNWFVTNKLDPNSGKVVV 254
A A DK + +G I P+++ + N E+ S T KL VV+
Sbjct: 87 LASSLAIDKIMTKKILKAEG-IPTPNYIAFSFDENPNFEAISSEILQTLKL-----PVVI 140
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
K R GS+IG+ + L KA +LE ID +++VE F+E G E TA VL +
Sbjct: 141 KAPREGSTIGIEFVFSK-QELPKAIKKVLE-IDKQLLVEEFIE-GVEVTASVLG-----N 192
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
+PVV LP +++ K ++Y KY P + PPR + E A
Sbjct: 193 SNPVV-LPL---------IEIVSKTRFYDYEAKYTPGLS-EHIIPPRIAPELSQKAIEYA 241
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
++ LG FAR+D + ++N I GM TS
Sbjct: 242 RKTYKALGCRGFARVDFMIDVRKNEAY----------------VLEVNTIPGMTATSLFP 285
Query: 435 QQASKVGFSHSNILRTII 452
A G S +++ I+
Sbjct: 286 DAAKAQGISFEDLVEKIL 303
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 67/342 (19%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
G+++ ++ M +I E +K KEN FIA+HG GEDG +Q LLE +PYTG G++A
Sbjct: 32 GYNVV-KIDMDRNIAETLK--KENIDFAFIALHGKYGEDGAIQGLLEIMDIPYTGSGILA 88
Query: 671 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVK 729
S +DK+ T L G+ T N ++ P + I E+ L+ + +K
Sbjct: 89 SSLAIDKIMTKKILKA---EGIPTPNYIAFSFDE---NPNFEAISSEILQTLKL-PVVIK 141
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
R+G + G+ + ++L +K + E + L+ E F
Sbjct: 142 APREGSTIGIEFVFSKQELPKAIKKVLEI----------------------DKQLLVEEF 179
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 849
+E VE+T V+G + ++P + +
Sbjct: 180 IE-------------------------GVEVTASVLGNSNPV--VLPLIEIVSKTRFYDY 212
Query: 850 EEKFQGGTGINLTPPP-ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
E K+ G ++ PP A +S +A++ ++ + AL GF+R+D ++V E
Sbjct: 213 EAKYTPGLSEHIIPPRIAPELSQKAIEYARKTYK----ALGCRGFARVDFMIDVRKNEAY 268
Query: 909 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950
++EVNT+PGMT +T L A Q + K+L LG E
Sbjct: 269 VLEVNTIPGMT-ATSLFPDAAKAQGISF-EDLVEKILMLGLE 308
>gi|221217556|ref|ZP_03589026.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
burgdorferi 72a]
gi|224534092|ref|ZP_03674675.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a]
gi|225548522|ref|ZP_03769570.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a]
gi|225549817|ref|ZP_03770781.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a]
gi|221192619|gb|EEE18836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
burgdorferi 72a]
gi|224512791|gb|EEF83159.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a]
gi|225369625|gb|EEG99074.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a]
gi|225370785|gb|EEH00220.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a]
Length = 361
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 166/388 (42%), Gaps = 50/388 (12%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPTR 258
+ +KY L + VP G ++ L + + G V+VKP
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVP---FIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAV 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 181 LGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGNEKMK---- 232
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIREG 373
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 --IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEY 280
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A L ++ L L AR+D +F+ + GTI +IN I G S
Sbjct: 281 AFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIPGFTDISMF 324
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPN 461
+ S G +++ +I +A + N
Sbjct: 325 AKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|195941931|ref|ZP_03087313.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi 80a]
gi|387825854|ref|YP_005805307.1| D-alanine--D-alanine ligase [Borrelia burgdorferi JD1]
gi|312148040|gb|ADQ30699.1| D-alanine--D-alanine ligase [Borrelia burgdorferi JD1]
Length = 361
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 167/396 (42%), Gaps = 66/396 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP-------SFLLQGSEV--NESELSNWFVTNKLDPNSG 250
+ +KY L + VP + L E+ N E+ +
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGY----------- 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLD 308
V+VKP GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 173 PVIVKPAVLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGN 228
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIV 365
+ P EV +Q D IF +Y KY +P + ++ P
Sbjct: 229 EKMK------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETN 272
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ SI+E A L ++ L L AR+D +F+ + GTI +IN I
Sbjct: 273 QLLSIKEYAFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIP 316
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
G S + S G +++ +I +A + N
Sbjct: 317 GFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|291456019|ref|ZP_06595409.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213 = JCM
1192]
gi|291382428|gb|EFE89946.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213 = JCM
1192]
Length = 397
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 122/296 (41%), Gaps = 34/296 (11%)
Query: 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITV 221
+VD V P +HG +GEDG +Q +LE VP+VG G A DK+ + ++ G T
Sbjct: 126 GHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLNAAGIPTA 185
Query: 222 PSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI 281
P ++ +++ L + + VKP+RAGSS GVT K K
Sbjct: 186 PGIMVDARAFTAADVVAQIEVAGL---AYPLFVKPSRAGSSFGVT---------KVDKAE 233
Query: 282 ILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPT---EVELQFQGSV--DVR 336
LE DRV + G ++ ++ G + VL P E E + G + D +
Sbjct: 234 DLETQQDRVAAAIATAGEHDWKVLIEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQ 293
Query: 337 EKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396
D +++ KY+ P P+ V+ +R+ A F+ + +R+D + P
Sbjct: 294 NDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTPD 353
Query: 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
GT++ +IN + G S + G ++ ++ +I
Sbjct: 354 -----------------GTVMVNEINTMPGFTPISMYPKAWDATGVGYTELITRLI 392
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 131 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLNAAGIPTAPGIMV 190
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
D R D+ ++ L VKP+R G S GV ++ AEDL
Sbjct: 191 DAR------AFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAEDL 235
>gi|405980700|ref|ZP_11039030.1| D-alanine-D-alanine ligase [Actinomyces neuii BVS029A5]
gi|404393343|gb|EJZ88398.1| D-alanine-D-alanine ligase [Actinomyces neuii BVS029A5]
Length = 370
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 111/403 (27%), Positives = 170/403 (42%), Gaps = 64/403 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI-----------DRNLNAYAIS 127
RV ++ GG S E IS ++A VL++I V I D L
Sbjct: 4 RVLIVFGGRSGEHSISCSTAAGVLENIDRSKFDVLTVGITPEGKWVNVPDDPTLYRLEGD 63
Query: 128 SAQVYSNTPADFDF------KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGI 181
S + + D LE + + G + E A+ NVD+VFP +HG +GEDG I
Sbjct: 64 SGATIAGDKSRMDIVPGEGRALEIILE-EGEIVEAAD--LGNVDVVFPLLHGPYGEDGTI 120
Query: 182 QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
Q +LE +P+VG G A DK +++QG +P+ Q + V
Sbjct: 121 QGMLEMAGLPYVGCGVLASAACMDKPTTKTILTEQG---IPAGRWQLVTDYQWRSDQDGV 177
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID---SLKKAKGIILEGIDDRVVVELFLEG 298
+L V VKP RAGSS+G+T V D ++++A+ D RV+VE L
Sbjct: 178 LYRLGALGLPVYVKPARAGSSLGITKVTAVEDLPAAIEEAR-----RHDPRVIVEA-LTK 231
Query: 299 GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 358
G E VL +G VL G ++V+ + ++Y+ KY+ V+
Sbjct: 232 GIEVECAVLGAPAGEQPKASVL----------GQIEVKNEQKFYDYKTKYVDHDAVSLVI 281
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P P ++ ++ A F +G AR+D F+ ET G I
Sbjct: 282 PAPLPDELMKKAQDIAVAAFDAMGCEGLARVD---------CFADLET-------GQITV 325
Query: 419 TDINLISGMEQTS---FLFQQASKVGFSHSNILRTIIGHACSR 458
+IN + G S L+Q+A G S+S+++ +I A R
Sbjct: 326 NEINTMPGFTPFSMYPLLWQEA---GMSYSDLITKLIELALQR 365
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 137/324 (42%), Gaps = 66/324 (20%)
Query: 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL---ADL 690
N VF +HG GEDGT+Q +LE G+PY G GV+AS CMDK T L A
Sbjct: 102 NVDVVFPLLHGPYGEDGTIQGMLEMAGLPYVGCGVLASAACMDKPTTKTILTEQGIPAGR 161
Query: 691 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
L + R +D + + L + + VKPAR G S G+ ++ EDL
Sbjct: 162 WQLVTDYQWRSDQD-------GVLYRLGA--LGLPVYVKPARAGSSLGITKVTAVEDLPA 212
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810
A+EE +R H +P R++
Sbjct: 213 ---AIEE----------ARRH------DP----------------------------RVI 225
Query: 811 WKGNSRWVEITVGVIGKCGSMH---SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
+ ++ +E+ V+G S++ + VK + K+ ++L P +
Sbjct: 226 VEALTKGIEVECAVLGAPAGEQPKASVLGQIEVKNEQKFYDYKTKYVDHDAVSLVIP--A 283
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
+ E + K + +A+ EG +R+D F +++ G++ + E+NT+PG TP + ++
Sbjct: 284 PLPDELMKKAQDIAVAAFDAMGCEGLARVDCFADLETGQITVNEINTMPGFTPFS--MYP 341
Query: 928 ALSEQPPMYPHQFFRKVLDLGSER 951
L ++ M K+++L +R
Sbjct: 342 LLWQEAGMSYSDLITKLIELALQR 365
>gi|218249946|ref|YP_002374727.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
burgdorferi ZS7]
gi|226321518|ref|ZP_03797044.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26]
gi|226729268|sp|B7J1D2.1|DDL_BORBZ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|218165134|gb|ACK75195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
burgdorferi ZS7]
gi|226232707|gb|EEH31460.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26]
Length = 361
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 167/396 (42%), Gaps = 66/396 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP-------SFLLQGSEV--NESELSNWFVTNKLDPNSG 250
+ +KY L + VP + L E+ N E+ +
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKKNVKEVLGY----------- 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLD 308
V+VKP GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 173 PVIVKPAVLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGN 228
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIV 365
+ P EV +Q D IF +Y KY +P + ++ P
Sbjct: 229 EKMK------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETN 272
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ SI+E A L ++ L L AR+D +F+ + GTI +IN I
Sbjct: 273 QLLSIKEYAFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIP 316
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
G S + S G +++ +I +A + N
Sbjct: 317 GFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|427402721|ref|ZP_18893718.1| D-alanine-D-alanine ligase [Massilia timonae CCUG 45783]
gi|425718527|gb|EKU81474.1| D-alanine-D-alanine ligase [Massilia timonae CCUG 45783]
Length = 323
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 152/382 (39%), Gaps = 93/382 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL +QG R ++A+A
Sbjct: 14 KVGVLFGGRSAEREISLISGAGVLAALQG-----------RGIDAHA------------- 49
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD +SLA E A D VF +HGR+GEDG +Q LE +P+ G+G
Sbjct: 50 FDPGTQSLA----------ELAAQRFDRVFIALHGRYGEDGSLQGALELLGIPYTGSGVM 99
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV----- 253
A DK IT LQ ES + +V D + VV
Sbjct: 100 ASSVGMDK------------ITTKKIWLQ-----ESVPTPRYVRIDADTDLDAVVADLGL 142
Query: 254 ---VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
VKP GSSIG+T D LK+A ++ +D+ V+ E F+ G EFT VL G
Sbjct: 143 PLIVKPPLEGSSIGITKVTQA-DQLKEAVALVTS-MDESVLAEEFVT-GREFTVAVLGHG 199
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
+ P+ V++ + ++Y+ KY T YH P P + + I
Sbjct: 200 ASARALPI--------------VEIVAPEGKYDYQNKYF-TDDTQYHCPAPLPEELTHEI 244
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+ A ++ LG + R+D S F ++N GM
Sbjct: 245 QRHAVNAYRALGCEGWGRVDVLVRESDMRPF----------------LLEVNTSPGMTTH 288
Query: 431 SFLFQQASKVGFSHSNILRTII 452
S + A VG + ++ I+
Sbjct: 289 SLVPMAARAVGIGYEDLCVEIL 310
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 116/300 (38%), Gaps = 71/300 (23%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+LA + VFIA+HG GEDG+LQ LE G+PYTG GVMAS MDK+ T +
Sbjct: 59 ELAAQRFDRVFIALHGRYGEDGSLQGALELLGIPYTGSGVMASSVGMDKITTKKIWLQES 118
Query: 689 DLGVLTINKDVRRKEDL-LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
+ + VR D L + D+ L VKP +G S G+ ++ A+
Sbjct: 119 ----VPTPRYVRIDADTDLDAVVADL---------GLPLIVKPPLEGSSIGITKVTQADQ 165
Query: 748 L---TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
L V +++E +L E FV T +
Sbjct: 166 LKEAVALVTSMDESVLA-------------------------EEFV-----------TGR 189
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
E TV V+G S +L V G + F T + P
Sbjct: 190 --------------EFTVAVLGHGASARALPIVEIVAPEGKYDYQNKYFTDDTQYHCPAP 235
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ E + ++ AL EG+ R+D V + ++EVNT PGMT +++
Sbjct: 236 ----LPEELTHEIQRHAVNAYRALGCEGWGRVDVLVRESDMRPFLLEVNTSPGMTTHSLV 291
>gi|146319006|ref|YP_001198718.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
[Streptococcus suis 05ZYH33]
gi|145689812|gb|ABP90318.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
[Streptococcus suis 05ZYH33]
Length = 424
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 107/428 (25%), Positives = 177/428 (41%), Gaps = 78/428 (18%)
Query: 57 RASAEVLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116
R A + E + M+KE + L+ GG SAER +S+ SA SV+ I D V+ Y+
Sbjct: 8 RVIALIQEGKYMSKET-------LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYF 60
Query: 117 IDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFG 176
I + + Q +S TP+ D KL + A + +VFP +HG G
Sbjct: 61 ISQTGD---FIKTQEFSQTPSA-DEKLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMG 116
Query: 177 EDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESE 235
EDG IQ LE +P+VGT + A DK + G VP +++G ++
Sbjct: 117 EDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGISQVPYVAVIEGENID--- 173
Query: 236 LSNWFVTNKLDPNSGK----VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
+K+ GK V VKP GSS+G++ A + L+KA + + D RV+
Sbjct: 174 -------DKIAEIEGKLTYPVFVKPANMGSSVGISKAED-LAGLRKALDLAFK-YDSRVL 224
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREK--------DAIFN 343
VE G + E+E+ G+ DV+ K A ++
Sbjct: 225 VE-----------------QGVNAR-------EIEVGLLGNADVKTKLPGEVVKNVAFYD 260
Query: 344 YRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSS 403
Y KY+ ++ P + +++ +R+ A+ F+ +G C + D +FL
Sbjct: 261 YHAKYI-DNKIPMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSPCD-FFL--------- 309
Query: 404 SETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463
TE G I ++N + G Q +G + ++ ++ A F N
Sbjct: 310 -------TENGEIFLNELNTMPGFTQWFMYPLLWDNMGLGYPELIEKLVCLAKEMFENTR 362
Query: 464 SYNSVSSH 471
+ S + +
Sbjct: 363 NVTSFNYY 370
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 102 EEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLES---AGI 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I +I +LT + VKPA G S G+++ AEDL
Sbjct: 159 SQVPYVAVIEGENIDDKIAEIEGKLTY-----PVFVKPANMGSSVGISK---AEDLAGLR 210
Query: 753 KALE 756
KAL+
Sbjct: 211 KALD 214
>gi|157149874|ref|YP_001450726.1| D-alanyl-alanine synthetase A [Streptococcus gordonii str. Challis
substr. CH1]
gi|189083061|sp|A8AY66.1|DDL_STRGC RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|157074668|gb|ABV09351.1| D-Ala-D-Ala ligase [Streptococcus gordonii str. Challis substr.
CH1]
Length = 348
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 165/379 (43%), Gaps = 47/379 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Q +S+ PA+ D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGD---FIKTQEFSSKPAE-DV 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + S + +VFP +HG GEDG IQ LE +P+VG +
Sbjct: 64 RLMTNDTVDMSRKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS 261
A DK + G VP L E E ++ + KL S V KP+ GS
Sbjct: 124 LAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---SYPVFTKPSNMGS 178
Query: 262 SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321
S+G++ + + L+ + + + D RV+VE TA ++VG + L
Sbjct: 179 SVGISKSDNQ-EELRASLDLAFK-YDSRVLVE------QGVTAREIEVGLLGNADVKSSL 230
Query: 322 PTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
P EV KD A ++Y+ KY+ ++ P + P V+N++R+ A + F+
Sbjct: 231 PGEV-----------VKDVAFYDYQAKYI-DNKITMAIPAQLPEGVVNTMRQNAEIAFRA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
+G +R D ++ TE G + ++N + G Q S +
Sbjct: 279 IGGLGLSRCDFFY-----------------TEDGQVFLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRF 459
G ++ +++ ++ A F
Sbjct: 322 GLAYPDLIEKLVALAEEAF 340
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 113/294 (38%), Gaps = 75/294 (25%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L V
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQV 143
Query: 693 ----LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
L +D+ +K E+ KL KP+ G S G+++ E+L
Sbjct: 144 PYVALVDGEDLEQK-----------IQEIEEKLSYPVFT-KPSNMGSSVGISKSDNQEEL 191
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
+ ++ F S R
Sbjct: 192 RASL-----------------------------------------DLAFKYDS------R 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---P 865
++ + EI VG++G + S +P VK+ + K+ I + P P
Sbjct: 205 VLVEQGVTAREIEVGLLGNA-DVKSSLPGEVVKDVA-FYDYQAKYIDNK-ITMAIPAQLP 261
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+++T +Q E+ A+ G SR D F ++G+V + E+NT+PG T
Sbjct: 262 EGVVNT-----MRQNAEIAFRAIGGLGLSRCD-FFYTEDGQVFLNELNTMPGFT 309
>gi|379738361|ref|YP_005331867.1| D-alanine--D-alanine ligase [Blastococcus saxobsidens DD2]
gi|378786168|emb|CCG05841.1| D-alanine--D-alanine ligase [Blastococcus saxobsidens DD2]
Length = 331
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 129/299 (43%), Gaps = 40/299 (13%)
Query: 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFIT 220
AA D VF +HG GEDG ++ VL+ VP+VG+ + ACR A+DK A+ + + +T
Sbjct: 68 AAPADAVFIALHGATGEDGALRAVLDLAGVPYVGSPAAACRLAWDK-PAAKSVVRSAAVT 126
Query: 221 VPSFL-LQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKA 278
P ++ L S EL V + + G ++VKP GS++GV V D A
Sbjct: 127 TPDWVALPHSTFR--ELGAGAVLDLMVARLGLPLMVKPASGGSALGVQKVSRVED--LPA 182
Query: 279 KGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREK 338
+ D V+VE F+E G E V+D+G G + P +V++ +
Sbjct: 183 AMVSCFAYGDTVMVERFVE-GVELAIAVVDLGDGPEALP--------------AVEIEPE 227
Query: 339 DAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSST 398
+F+Y +Y P YH P R P E A + Q LGL D +R D P
Sbjct: 228 SGVFDYASRYTP-GLTEYHAPARIPDETAARAAEVAVRVHQVLGLADLSRTDAIVTPD-- 284
Query: 399 HVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
G + F ++N+ G+ +TS G ++L ++ S
Sbjct: 285 ---------------GEVHFLEVNVSPGLTETSMFPMAVEAAGHELGDVLARLLARRAS 328
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 116/295 (39%), Gaps = 56/295 (18%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
LA VFIA+HG GEDG L+++L+ GVPY G A + DK A + A
Sbjct: 66 LAAAPADAVFIALHGATGEDGALRAVLDLAGVPYVGSPAAACRLAWDKPAAKSVVRSAAV 125
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
+ +L ++D+ + ++L L VKPA G + GV ++ EDL
Sbjct: 126 TTPDWVALPHSTFRELGAGAVLDL---MVARLGLP-LMVKPASGGSALGVQKVSRVEDLP 181
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
A+ C A+G + ++ E FVE
Sbjct: 182 ---AAMVSCF----------AYG---------DTVMVERFVE------------------ 201
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
VE+ + V+ G +P+V ++ + ++ G+ PA I
Sbjct: 202 -------GVELAIAVV-DLGDGPEALPAVEIEPESGVFDYASRYT--PGLTEYHAPARI- 250
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
E + + + L L SR DA V D GEV +EVN PG+T +++
Sbjct: 251 PDETAARAAEVAVRVHQVLGLADLSRTDAIVTPD-GEVHFLEVNVSPGLTETSMF 304
>gi|422855986|ref|ZP_16902644.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1]
gi|327461647|gb|EGF07978.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1]
Length = 353
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 163/400 (40%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D VR Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVRTYFITKDGDFIQTQEFEAKPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDMSRKIKP--------SDIYEKGV----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D ++ E G +
Sbjct: 263 AKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G ++ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EKGVVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|422853793|ref|ZP_16900457.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK160]
gi|422863067|ref|ZP_16909699.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK408]
gi|325697104|gb|EGD38991.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK160]
gi|327473367|gb|EGF18787.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK408]
Length = 353
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 165/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDISQKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 118 PYVGCNILSSGLAMDKITTKRVLESAGIAQVPYVALVDGENLEQKIQE--IEEKL---TY 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 173 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 203
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 204 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 262
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D +++ E G +
Sbjct: 263 AKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYV-----------------EDGQVFLN 305
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G ++ +++ ++G A F
Sbjct: 306 ELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGENLEQKIQEIEEKLTY-----PVFTKPSNMGSSVGISK 189
>gi|269957072|ref|YP_003326861.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
gi|269305753|gb|ACZ31303.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
Length = 377
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 162/408 (39%), Gaps = 53/408 (12%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN------- 120
M+++ R RV L+ GG S E IS +A VL I D V I R+
Sbjct: 1 MSEQPSPARKTRVALLFGGRSGEHAISAATAAGVLRAIDRDVYDVVPVGITRDGRWVVAA 60
Query: 121 --LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF----AEHLAANVDIVFPTIHGR 174
+ I+ ++ T D + SL G +L + VD+VFP +HG
Sbjct: 61 DEPERWEITDGRLPEVTSDDGAEVVLSLTAGERTLRVLEPGQVPGVLGEVDVVFPLLHGP 120
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS--FLLQGSEVN 232
FGEDG +Q +LE +V +VG G A DK+ L + QG P L + E
Sbjct: 121 FGEDGTLQGLLELADVHYVGAGVLASAVGMDKHFMKLVLEGQGLPVGPYTVILPRDWETR 180
Query: 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRV 290
E + L V VKP RAGSS+G+T +D L + E D +V
Sbjct: 181 REEATAAVARLGL-----PVFVKPARAGSSLGIT----RVDDLADLPAAVAEAQRHDPKV 231
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
+VE +E G E VL SG LP L + VD A +++ KYL
Sbjct: 232 IVEQGIE-GREVECAVLGGRSG--------LPARASLPGEIVVD-HGAHAFYDFEAKYLD 281
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
V P P V+ +R A F +G +R+D VF + + +
Sbjct: 282 ESAVQLRCPADLPDKVVAQVRSIAVRTFDAVGAEGLSRVD---------VFVTPDER--- 329
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ +IN + G S + G ++ ++ +I A R
Sbjct: 330 -----VIVNEINTMPGFTPFSMYPRMWEATGLTYPQLIDELIQLALER 372
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTI 695
VF +HG GEDGTLQ LLE V Y G GV+AS MDK L L +G T+
Sbjct: 112 VVFPLLHGPFGEDGTLQGLLELADVHYVGAGVLASAVGMDKHFMKLVLEGQGLPVGPYTV 171
Query: 696 ----NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+ + RR+E ++L VKPAR G S G+ R+ DL
Sbjct: 172 ILPRDWETRREEATAA----------VARLGLPVF-VKPARAGSSLGITRVDDLADLPAA 220
Query: 752 V 752
V
Sbjct: 221 V 221
>gi|288904861|ref|YP_003430083.1| D-alanine--D-alanine ligase [Streptococcus gallolyticus UCN34]
gi|288731587|emb|CBI13142.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34]
Length = 348
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 169/386 (43%), Gaps = 49/386 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I ++ + Q +S+ PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGD---FIKTQEFSSKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G+++ ++ VT + + V VKP G
Sbjct: 124 VAMDKISTKHVLESAGVPLVAYVTYVEGADLEKA------VTEVNEKLTYPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E + A ++VG +
Sbjct: 178 SSVGISKADDE-EGLRSAIDLALK-YDSRILIE------TGVNAREIEVGILGNADVQTT 229
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y KY+ ++ P ++ +R A+ F+
Sbjct: 230 LPGEV-----------VKDVAFYDYDAKYI-DNKITMDIPAHIDSSIMEEMRGYATTAFR 277
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G C +R D +FL HV+ ++N + G Q S
Sbjct: 278 AIGGCGLSRCD-FFLTEDGHVY----------------LNELNTMPGFTQWSMYPLLWEN 320
Query: 440 VGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 321 MGLAYSDLIEKLVELAKEMFEKRESH 346
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK++T + L GV
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAMDKISTK---HVLESAGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + L+ + ++ +LT + VKPA G S G+++ A+D
Sbjct: 141 PLVAYVTYVEGADLEKAVTEVNEKLTYP-----VFVKPANMGSSVGISK---ADDEEGLR 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A++ L K R++ +
Sbjct: 193 SAIDLAL--------------------------------------------KYDSRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ + +++ PA I S+
Sbjct: 209 TGVNAREIEVGILGNA-DVQTTLPGEVVKDVAFYDYDAKYIDNKITMDI---PAHIDSS- 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+++ + A+ G SR D F+ D G V + E+NT+PG T + ++ L E
Sbjct: 264 IMEEMRGYATTAFRAIGGCGLSRCDFFLTED-GHVYLNELNTMPGFTQWS--MYPLLWEN 320
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K+++L E F
Sbjct: 321 MGLAYSDLIEKLVELAKEMF 340
>gi|322373496|ref|ZP_08048032.1| D-alanine--D-alanine ligase [Streptococcus sp. C150]
gi|321278538|gb|EFX55607.1| D-alanine--D-alanine ligase [Streptococcus sp. C150]
Length = 348
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 169/385 (43%), Gaps = 47/385 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V + + V VKP G
Sbjct: 124 LAMDKITTKHILEVVGVPQVAYTVFIEGEDLEAA------VARTVQKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E A ++VG +L
Sbjct: 178 SSVGISKAENEAE-LRAAIDLALK-YDSRILIE------QGVVAREIEVG--------IL 221
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
T V+ G +V + A ++Y+ KY+ ++ P P V+ +R A+ F+
Sbjct: 222 GNTTVKTTEPG--EVVKDVAFYDYQAKYI-DNKITMDIPAHVPAEVMTQMRAYAAKAFRA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LG C AR D +FL E GTI ++N + G Q S +
Sbjct: 279 LGGCGLARCD-FFL----------------AEDGTIYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRFPNLASY 465
G S++++++ ++ F S+
Sbjct: 322 GLSYTDLIKELVALGQEMFEKRESH 346
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD-LG 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ + +G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSLAMDKITT----KHILEVVG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L+ + +LT + VKPA G S G+++
Sbjct: 140 VPQVAYTVFIEGEDLEAAVARTVQKLTFP-----VFVKPANMGSSVGISK 184
>gi|157147020|ref|YP_001454339.1| D-alanyl-alanine synthetase A [Citrobacter koseri ATCC BAA-895]
gi|157084225|gb|ABV13903.1| hypothetical protein CKO_02797 [Citrobacter koseri ATCC BAA-895]
Length = 371
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 173/398 (43%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A+ Y +N
Sbjct: 10 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKARFDVVLLGIDKQ-GQWHVSDAENYLLNAN 68
Query: 135 TPADFDFKLES--LAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + S LAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 69 DPAHIALRPSSTSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 124
Query: 184 VLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
+L N+PFVG+ GS AC DK D + + + + + F+ + N +
Sbjct: 125 MLRVANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFITL-TRANRDAIRFAE 179
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
V ++L + VKP GSS+GV+ ++A + E D +VVVE ++ G
Sbjct: 180 VASRL---GLPLFVKPANQGSSVGVSKVTSEA-QYEQAVALAFE-FDHKVVVEQGIK-GR 233
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL G D HP E+ L + Y KY+ P
Sbjct: 234 EIECAVL----GND-HPQASTCGEIVL----------NSDFYAYDTKYIDGNGAQVVVPA 278
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR+ A +Q LG AR+D VF ++E + ++ +
Sbjct: 279 QIPQEVNDKIRQIAIQAYQTLGCAGMARVD---------VFLTAENE--------VVINE 321
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S + G +++++ +I A R
Sbjct: 322 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 359
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 107 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFI 165
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R D ++ + E+ S+L L VKPA G S GV+++
Sbjct: 166 TLTRANRDAIR------FAEVASRLGLP-LFVKPANQGSSVGVSKV 204
Score = 39.7 bits (91), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 845 DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN 904
D + + K+ G G + P + + E DK +Q L G +R+D F+ +N
Sbjct: 258 DFYAYDTKYIDGNGAQVVVP--AQIPQEVNDKIRQIAIQAYQTLGCAGMARVDVFLTAEN 315
Query: 905 GEVLIIEVNTVPGMT 919
EV+I E+NT+PG T
Sbjct: 316 -EVVINEINTLPGFT 329
>gi|395232595|ref|ZP_10410845.1| D-alanyl-alanine synthetase A [Enterobacter sp. Ag1]
gi|394732997|gb|EJF32636.1| D-alanyl-alanine synthetase A [Enterobacter sp. Ag1]
Length = 366
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 163/394 (41%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + I+ A Y +N
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSKFDVVLLGIDKQ-GQWHINDASSYLLNAN 62
Query: 135 TPA--DFDFKLESLAQGFGSL------SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + +++A G + AE L+ +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALIALNRSEKNVALVPGQTEHQLIETSTAEQLS-QIDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+G + DK A + G P L + N +++S V +L
Sbjct: 122 VANLPFVGSGVLGSAVSMDKDVAKRLLRDAGLNVAPFITL--TRANRAKISFAEVEKQLG 179
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ A + A + E D +VVVE ++ G E V
Sbjct: 180 L---PLFVKPANQGSSVGVSKA-STEEQYHAAVALAFE-FDHKVVVETGIK-GREIECAV 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C +V+ ++Y KY+ Q P
Sbjct: 234 LGNDYPQASTCGEIVV-----------------NSEFYSYDTKYIDEQAAQVVVPAALDA 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V + IR+ A +Q L AR+D + TE ++ +IN +
Sbjct: 277 DVNDKIRKIAVRAYQALECSGMARVDVFL-----------------TETNDVIINEINTL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G S + G S+ ++ +I A R
Sbjct: 320 PGFTNISMYPKLWQASGISYQELITRLIELALER 353
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 126/319 (39%), Gaps = 72/319 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSGVLGSAVSMDK---DVAKRLLRDAGLNVAPF 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+T+ + R K + E+ +L L VKPA G S GV++ E V
Sbjct: 159 ITLTRANRAKIS---------FAEVEKQLGLP-LFVKPANQGSSVGVSKASTEEQYHAAV 208
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+F H ++ VET K
Sbjct: 209 AL-----------AFEFDHKVV---------------VETG-----------------IK 225
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
G EI V+G S + V + + S + K+ + P A + +
Sbjct: 226 GR----EIECAVLGNDYPQASTCGEIVV--NSEFYSYDTKYIDEQAAQVVVPAA--LDAD 277
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
DK ++ AL+ G +R+D F+ N +V+I E+NT+PG T + ++ L +
Sbjct: 278 VNDKIRKIAVRAYQALECSGMARVDVFLTETN-DVIINEINTLPGFT--NISMYPKLWQA 334
Query: 933 PPMYPHQFFRKVLDLGSER 951
+ + ++++L ER
Sbjct: 335 SGISYQELITRLIELALER 353
>gi|330466252|ref|YP_004403995.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
gi|328809223|gb|AEB43395.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
Length = 368
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 163/395 (41%), Gaps = 54/395 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAISS- 128
RV ++ GG S E GIS SA SVL + D+ V I R + AI+S
Sbjct: 8 RVAIVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRAGQWVLTSGDPTELAINSR 67
Query: 129 --AQVYSNTPADFDFKLESLAQGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVL 185
++ + + AD + + G L A ANVD+VFP +HG +GEDG IQ +L
Sbjct: 68 RLPEITAESGADIVLRADPTGSGLLVLDPTEGPRALANVDVVFPVLHGAYGEDGTIQGML 127
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNESELSNWFVTNK 244
E +P+VG A A DK + +G P +L+ G ++E + +
Sbjct: 128 EMAGIPYVGAKVFASAAAMDKEFTKKICAAEGIPIGPYAVLRSGMTLSEEDKQRLGL--- 184
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
V VKP+RAGSS GV+ D L+ A I E ID +V+VE + G E
Sbjct: 185 ------PVFVKPSRAGSSFGVSKVSDWAD-LEAAIAIARE-IDSKVLVEGAII-GREIEC 235
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTPPRFP 363
VL+ +G VL E++ G D +++ KY+ + Y P P
Sbjct: 236 GVLEGEAGGTPEASVL----AEVRVVGDYD------FYDFEAKYIDAESACEYDVPADLP 285
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V +R+ A F L AR D + P I +IN
Sbjct: 286 ERVARQVRDYAVRAFTALDCAGLARADFFVTPEL-----------------DIYLNEINT 328
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G TS + + G + ++ +I A +R
Sbjct: 329 MPGFTPTSMFPRMWAASGLEYPKLVDRLIRTALTR 363
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 631 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 690
A N VF +HG GEDGT+Q +LE G+PY G V AS MDK
Sbjct: 102 ALANVDVVFPVLHGAYGEDGTIQGMLEMAGIPYVGAKVFASAAAMDK------------- 148
Query: 691 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-----LCVKPARDGCSTGVARLCCA 745
K + E + P + +T + K + VKP+R G S GV+++
Sbjct: 149 ---EFTKKICAAEGIPIGPYAVLRSGMTLSEEDKQRLGLPVFVKPSRAGSSFGVSKVSDW 205
Query: 746 EDLTVYVKALEE 757
DL + E
Sbjct: 206 ADLEAAIAIARE 217
>gi|406026812|ref|YP_006725644.1| D-alanyl-alanine synthetase A [Lactobacillus buchneri CD034]
gi|405125301|gb|AFS00062.1| D-alanyl-alanine synthetase A [Lactobacillus buchneri CD034]
Length = 376
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 169/396 (42%), Gaps = 64/396 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI---SSAQVYSNT 135
+GLI GG S+E +S SA ++ D + + V + + +N Y + +S++V+
Sbjct: 8 HIGLIFGGNSSEHDVSKRSAHNIYDAMDKERYDVSLFLMTKN--GYFLDHEASSRVFDGE 65
Query: 136 PADFDFKLE----SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
P D K E L + AE +++D+ FP IHG GEDG IQ +L + P
Sbjct: 66 PEDEVAKQELAKLDLKNPLARIINLAEE--SDIDVFFPIIHGNLGEDGTIQGLLRLLHKP 123
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
+VGT +FDK D + ++ K + + EV + + L G+
Sbjct: 124 YVGTAILGSAMSFDK-DITKKIVKLAGVPTTRY-----EVITPLTAEQYSYESLSDELGQ 177
Query: 252 VV-VKPTRAGSSIGV-------TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
+ +KP GSS+G+ + G+ D+ + D +V++E +EG E
Sbjct: 178 TLFIKPANQGSSVGIHKVENAEEYSEGIRDAFR---------YDSKVLIEEAIEGPEELE 228
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
+L G D HP+ +++ G++ V + DA + Y K++ QV + P
Sbjct: 229 ISIL----GND-HPIA---SKI-----GAIRVPKDDAFYTYDNKFVDASQVKFDVPVDIS 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ I E ++ LGL ARID ++ S + Y +++N
Sbjct: 276 EELAQQITEMGLTTYRALGLKGMARID--------YLVSKDDKPY---------MSEVNT 318
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ G S Q + G S+S ++ +I A F
Sbjct: 319 LPGFTNISLYPQLFAASGISYSELIDRLIQLAIDEF 354
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 126/306 (41%), Gaps = 62/306 (20%)
Query: 617 ELPMRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+L +++ + I LA+E+ VF + HG +GEDGT+Q LL PY G ++ S
Sbjct: 77 KLDLKNPLARIINLAEESDIDVFFPIIHGNLGEDGTIQGLLRLLHKPYVGTAILGSAMSF 136
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV--DIWHELTSKLQCKTLCVKPARD 733
DK T + LA GV T +V TP+ +E S +TL +KPA
Sbjct: 137 DKDITK-KIVKLA--GVPTTRYEVI-------TPLTAEQYSYESLSDELGQTLFIKPANQ 186
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S G+ ++ AE+ + G+ + ++LI E +E
Sbjct: 187 GSSVGIHKVENAEEYS---------------------EGIRDAFRYDSKVLI-EEAIEGP 224
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 853
E E+ + ++G + S + ++ V + + + KF
Sbjct: 225 E------------------------ELEISILGNDHPIASKIGAIRVPKDDAFYTYDNKF 260
Query: 854 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
+ + P +S E + + AL L+G +RID V+ D+ + + EVN
Sbjct: 261 VDASQVKFDVPVD--ISEELAQQITEMGLTTYRALGLKGMARIDYLVSKDD-KPYMSEVN 317
Query: 914 TVPGMT 919
T+PG T
Sbjct: 318 TLPGFT 323
>gi|383783285|ref|YP_005467852.1| putative D-alanine--D-alanine ligase [Actinoplanes missouriensis
431]
gi|381376518|dbj|BAL93336.1| putative D-alanine--D-alanine ligase [Actinoplanes missouriensis
431]
Length = 323
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 97/382 (25%), Positives = 154/382 (40%), Gaps = 72/382 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+ ++ GG S ER +SL S R VLD ++ L +
Sbjct: 11 LRILVLAGGLSYERDVSLRSGRRVLDALRSAGLTAELH---------------------- 48
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D L Q A D F +HG GEDG ++ VL+ +P+VG +
Sbjct: 49 DADVSLLPALQ------------ADPPDAAFIALHGATGEDGSLRGVLDLCGIPYVGADA 96
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
R R A+DK A M ++ I P ++ + SEL V +++ G ++VKP
Sbjct: 97 RTARLAWDKPSAK-SMLREAGIPTPDWVALPHD-RFSELGAVAVLDRIVDRLGLPLMVKP 154
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GS +G V D G D +VE ++ G + +IV D G+G +
Sbjct: 155 AQGGSGLGAAVVRDAADLPAAMVGCF--AYDSTALVEQYVTGTNVAVSIV-DRGAGPEPL 211
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
P+ V++ +D +++Y +Y +H P R V + I + A
Sbjct: 212 PI--------------VEIVPRDGVYDYAARYT-AGLTTWHVPARLSPAVADRITQVAVA 256
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
++ LGL D +RID V ++ G + N+ GM +TS L
Sbjct: 257 AYKALGLRDLSRID---------VIVGAD--------GEPMVLGCNVSPGMTETSLLPLA 299
Query: 437 ASKVGFSHSNILRTIIGHACSR 458
G +L +++G A SR
Sbjct: 300 VQAAGVDLGELLSSLVGQAVSR 321
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 106/286 (37%), Gaps = 56/286 (19%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
FIA+HG GEDG+L+ +L+ G+PY G ++ DK + A + L + G+ T +
Sbjct: 67 FIALHGATGEDGSLRGVLDLCGIPYVGADARTARLAWDKPS---AKSMLREAGIPTPDWV 123
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
+ + V + + +L L VKPA+ G G A + A DL A+ C
Sbjct: 124 ALPHDRFSELGAVAVLDRIVDRLGLP-LMVKPAQGGSGLGAAVVRDAADLP---AAMVGC 179
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
F L T N
Sbjct: 180 ------------------------------FAYDSTALVEQYVTGTN------------- 196
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
+ V ++ + G+ +P V + + ++ G P + +S D+
Sbjct: 197 -VAVSIVDR-GAGPEPLPIVEIVPRDGVYDYAARYTAGLTTWHVP---ARLSPAVADRIT 251
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
Q AL L SRID V D GE +++ N PGMT +++L
Sbjct: 252 QVAVAAYKALGLRDLSRIDVIVGAD-GEPMVLGCNVSPGMTETSLL 296
>gi|422883652|ref|ZP_16930101.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK49]
gi|332362739|gb|EGJ40535.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK49]
Length = 353
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 163/392 (41%), Gaps = 67/392 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ + Q + PA
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGD---FIQTQEFEANPAA 66
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + A S + + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 67 DD-KLMTNATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 125
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ A DK + G VP L E E ++ + +L + V KP+
Sbjct: 126 SSSLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEQL---TYPVFTKPSN 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ + E +E A LD+ +D +
Sbjct: 181 MGSSVGISKS----------------------------ENQAELRA-SLDLAFKYDSRVL 211
Query: 319 V---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
V + E+E+ G+VDV+ KD A ++Y KY+ ++ P + P V+
Sbjct: 212 VEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIPAKIPEKVV 270
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ +R+ A F+ LG +R D ++ E G + ++N + G
Sbjct: 271 SLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLNELNTMPGF 313
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
Q S +G S+ +++ ++G A F
Sbjct: 314 TQWSMYPLLWENMGLSYPDLIEKLVGLAEHAF 345
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + L+ I +I +LT + KP+ G S G+++
Sbjct: 146 AQVPYVALVDGEDLEQKIQEIEEQLTY-----PVFTKPSNMGSSVGISK 189
>gi|417005037|ref|ZP_11943630.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae FSL S3-026]
gi|341576850|gb|EGS27258.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae FSL S3-026]
Length = 348
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 172/392 (43%), Gaps = 61/392 (15%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + S ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D D + S+ + A IVFP +HG GEDG IQ LE +P+V
Sbjct: 68 NQTVDLDKMVRP--------SDIYDDNA----IVFPVLHGPMGEDGSIQGFLEVLRMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
GT + A DK +KQ TV + E + + L+ S +
Sbjct: 116 GTNILSSSVAMDKI-----TTKQVLATVDVPQVAYQTYFEGDDLEHAIKLSLETLSFPIF 170
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP GSS+G++ A SL+ A + L+ D R+++E +G TA ++VG
Sbjct: 171 VKPANMGSSVGISKATDE-SSLRSAIDLALK-YDSRILIE---QG---VTAREIEVG--- 219
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
+L +V+ F G V V++ D ++Y KY+ ++ P + + ++R+
Sbjct: 220 -----ILGNNDVKTTFPGEV-VKDVD-FYDYDAKYI-DNKITMDIPAKVDEATMEAMRQY 271
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
AS F+ +G C +R D +FL T+ G I ++N + G Q S
Sbjct: 272 ASKAFKAIGACGLSRCD-FFL----------------TKDGQIFLNELNTMPGFTQWSMY 314
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 315 PLLWENMGLTYSDLIEKLVMLAKEMFEKRESH 346
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 126/324 (38%), Gaps = 78/324 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
++ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA + V
Sbjct: 84 DDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKQV---LATVDV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDL 748
+ + D D+ H + KL +TL VKPA G S G++
Sbjct: 141 PQVAYQTYFEGD-------DLEHAI--KLSLETLSFPIFVKPANMGSSVGIS-------- 183
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
KA +E LR I++ K R
Sbjct: 184 ----KATDESSLR----------SAIDL-------------------------ALKYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G + + P VK+ D + K+ P
Sbjct: 205 ILIEQGVTAREIEVGILGN-NDVKTTFPGEVVKDV-DFYDYDAKYIDNKITMDIPAKVDE 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV----- 923
+ EA+ +Q A+ G SR D F+ D G++ + E+NT+PG T ++
Sbjct: 263 ATMEAM---RQYASKAFKAIGACGLSRCDFFLTKD-GQIFLNELNTMPGFTQWSMYPLLW 318
Query: 924 ----LIHQALSEQPPMYPHQFFRK 943
L + L E+ M + F K
Sbjct: 319 ENMGLTYSDLIEKLVMLAKEMFEK 342
>gi|387827116|ref|YP_005806398.1| D-alanine--D-alanine ligase [Borrelia burgdorferi N40]
gi|312149254|gb|ADQ29325.1| D-alanine--D-alanine ligase [Borrelia burgdorferi N40]
Length = 361
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 167/389 (42%), Gaps = 52/389 (13%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ +KY L + VP F +++ E+ N + V+VKP
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKR----NVKEALGYPVIVKPA 179
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 180 VLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEVREIECSIIGNEKMK--- 232
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIRE 372
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 ---IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKE 279
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A L ++ L L AR+D +F+ + GTI +IN I G S
Sbjct: 280 YAFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIPGFTDISM 323
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPN 461
+ S G +++ +I +A + N
Sbjct: 324 FAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|291005733|ref|ZP_06563706.1| D-alanine--D-alanine ligase [Saccharopolyspora erythraea NRRL 2338]
Length = 308
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 38/295 (12%)
Query: 165 DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF 224
D V +HG GE+G +Q VL+ Y +P+VGT RACR+A+DK A E+++ G +T P +
Sbjct: 50 DAVVVALHGGEGENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSG-LTTPDW 108
Query: 225 LLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283
++ EL V + L G +++KP + GS++G V D G +
Sbjct: 109 VVL-PHATFRELGAQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALS 167
Query: 284 EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFN 343
G D V+VE ++E G+E VLD G + P +V + + +++
Sbjct: 168 YG--DTVLVEKYIE-GTEVAIGVLDGPDGPEALP--------------AVQIEATNGVYD 210
Query: 344 YRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSS 403
Y +Y Y TP + + A + LGL D +R D
Sbjct: 211 YTARYT-AGLTTYRTPAELSPETAAAAGDLAVAAHRLLGLRDVSRTDAII---------- 259
Query: 404 SETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
GT+ F ++N+ G+ +TS L G S ++ T++ A SR
Sbjct: 260 -------DRDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGDVFATLVERAISR 307
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 58/297 (19%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
++ +E V +A+HGG GE+G +QS+L+ G+PY G A + DK A LA
Sbjct: 43 RIEQERPDAVVVALHGGEGENGAVQSVLDMYGIPYVGTDPRACRRAWDK---PTAKAELA 99
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
G+ T + V + + L +KL L +KP + G + G + A DL
Sbjct: 100 RSGLTTPDWVVLPHATFRELGAQSVLDALVAKLGLP-LMLKPDQGGSALGARVVRDAADL 158
Query: 749 -TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
+ V AL ++G + ++ E ++E
Sbjct: 159 PSAMVGAL--------------SYG---------DTVLVEKYIEG--------------- 180
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
E+ +GV+ +L P+V ++ + + ++ G TP +
Sbjct: 181 ----------TEVAIGVLDGPDGPEAL-PAVQIEATNGVYDYTARYTAGLTTYRTP---A 226
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+S E L L SR DA ++ D G V +EVN PG+T +++L
Sbjct: 227 ELSPETAAAAGDLAVAAHRLLGLRDVSRTDAIIDRD-GTVHFLEVNVSPGLTETSLL 282
>gi|224534249|ref|ZP_03674827.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S]
gi|224514351|gb|EEF84667.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S]
Length = 361
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 167/388 (43%), Gaps = 50/388 (12%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCSGIWYLLDSVSDPPNPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL G G F+ + ++D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGLGI---FSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPTR 258
+ +KY L + VP G ++ L V + + G V+VKP
Sbjct: 124 SAISSNKYFCKLLLKSFNIPIVP---FIGFRQHDYFLDKEEVKKNVKESLGYPVIVKPAV 180
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 181 LGSSIGINVAY----SENQIESFIEEALKYDLTIVIEKFIEAREIECSIIGNEKMK---- 232
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIREG 373
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 --IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEY 280
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A L+++ L L AR+D +F+ + G I +IN I G S
Sbjct: 281 AFLVYKNLELRGMARVD-FFVEKKS---------------GVIYLNEINTIPGFTDISMF 324
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPN 461
+ S G +++ +I +A + N
Sbjct: 325 AKMCSHDGLQFKDLVDNLIDYAFQSYIN 352
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 101/283 (35%), Gaps = 53/283 (18%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG GEDG +Q +L+ +P G G+M S +K L L V I
Sbjct: 90 VVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAISSNKYFCKLLLKSFNIPIVPFIG 149
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R+ + L ++ + L + VKPA G S G+ + +++
Sbjct: 150 --FRQHDYFLDKE--EVKKNVKESLGYPVI-VKPAVLGSSIGINVAYSENQIESFIEEAL 204
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ L I + E F+E EI
Sbjct: 205 KYDLTI----------------------VIEKFIEAREI--------------------- 221
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
+IG M P V + + K+ G ++ + + T L
Sbjct: 222 ----ECSIIGN-EKMKIFSPGEVVVQDFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLS 276
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K+ L+ L+L G +R+D FV +G + + E+NT+PG T
Sbjct: 277 IKEYAFLVYKNLELRGMARVDFFVEKKSGVIYLNEINTIPGFT 319
>gi|392977819|ref|YP_006476407.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392323752|gb|AFM58705.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 366
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 167/395 (42%), Gaps = 61/395 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SNT 135
RVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y +N
Sbjct: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQ-GQWHVNDASQYLLNAND 63
Query: 136 PADFDFKLESLAQGF------GSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA ++ G L + A A +D+VFP +HG GEDG +Q +L
Sbjct: 64 PAHIALNPSEISVATVPGVVKGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
N+PFVG+ GS AC DK D + + + + + F+ + N + S ++ +L
Sbjct: 124 NLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANRDKYSFSQISAQL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ +A + E D +VVVE ++ G E
Sbjct: 179 ---GLPLFVKPANQGSSVGVSKVTSEA-QFTEAVRLAFE-FDHKVVVEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C VVL ++Y KY+ + P
Sbjct: 233 VLGNDFPQASTCGEVVL-----------------NSDFYSYDTKYIDDKGAQVVVPANID 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V + IR A +Q LG C AR+D + P + V + T G FT+I++
Sbjct: 276 PAVNDKIRAIAINAYQALGCCGMARVDVFLTPENEVVINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G S+ ++ +I A R
Sbjct: 328 YPKLWQAS---------GLSYPELITRLIELALER 353
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 122/315 (38%), Gaps = 62/315 (19%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 101 VVFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFV 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R D + +++++L L VKPA G S GV+++ T V+
Sbjct: 160 TLTRANRDKYS------FSQISAQLGLP-LFVKPANQGSSVGVSKVTSEAQFTEAVR--- 209
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
L F E D + Q KG
Sbjct: 210 ---------------------------LAF----EFDHKVVVEQGI---------KGR-- 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI V+G S V + + D S + K+ G + P + + DK
Sbjct: 228 --EIECAVLGNDFPQASTCGEVVL--NSDFYSYDTKYIDDKGAQVVVP--ANIDPAVNDK 281
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 936
+ AL G +R+D F+ +N EV+I E+NT+PG T + ++ L + +
Sbjct: 282 IRAIAINAYQALGCCGMARVDVFLTPEN-EVVINEINTLPGFT--NISMYPKLWQASGLS 338
Query: 937 PHQFFRKVLDLGSER 951
+ ++++L ER
Sbjct: 339 YPELITRLIELALER 353
>gi|419707061|ref|ZP_14234565.1| D-alanine--D-alanine ligase [Streptococcus salivarius PS4]
gi|383283194|gb|EIC81154.1| D-alanine--D-alanine ligase [Streptococcus salivarius PS4]
Length = 348
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 169/385 (43%), Gaps = 47/385 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + V+ Y+I ++ + Q ++ TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGD---FIKTQEFTETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V + + V VKP G
Sbjct: 124 VAMDKITTKHILEVVGVPQVAYTVFIEGEDLEAA------VARTVQKLAFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E A ++VG +L
Sbjct: 178 SSVGISKAENEAE-LRAAIDLALK-YDSRILIE------QGVVAREIEVG--------IL 221
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
T V+ G +V + A ++Y+ KY+ ++ P P V+ +R A+ F+
Sbjct: 222 GNTTVKTTEPG--EVVKDVAFYDYQAKYI-DNKITMDIPAHVPAEVMTQMRAYAAKAFRA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LG C AR D +FL E GTI ++N + G Q S +
Sbjct: 279 LGGCGLARCD-FFL----------------AEDGTIYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRFPNLASY 465
G S++++++ ++ F S+
Sbjct: 322 GLSYTDLIKELVALGQEMFDKRESH 346
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD-LG 691
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T H+ + +G
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKITT----KHILEVVG 139
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
V + V + + L+ + +L + VKPA G S G+++
Sbjct: 140 VPQVAYTVFIEGEDLEAAVARTVQKL-----AFPVFVKPANMGSSVGISK 184
>gi|95930728|ref|ZP_01313461.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
gi|95133208|gb|EAT14874.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
Length = 305
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 161/377 (42%), Gaps = 82/377 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+G+I GG SAER +SL + +++ ++ C Y ++A AQ+
Sbjct: 7 RIGVIMGGTSAEREVSLRTGAAIVKALE------ECGYTVVAIDADKTLPAQL------- 53
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ +D+VF +HGRFGEDG IQ +LE +P+ G+G
Sbjct: 54 ---------------------IEKQIDVVFLAVHGRFGEDGTIQGMLELMQIPYTGSGVL 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK + M Q +T P+ L +VN S++ + P VVKP R
Sbjct: 93 ASALAIDKA-VTKRMVAQDGVTTPAATL--VDVN-SDVDDIVAQCGHFPQ----VVKPVR 144
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G+ +A D LK+A + D RV+VE +++ G E T V++ G +
Sbjct: 145 EGSTLGIAIANNA-DELKQAIAQARD-YDRRVLVEDYID-GREVTVSVMN---GRALSII 198
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
++P + ++Y KY + Y P P +I++ A +
Sbjct: 199 EIVP---------------ESGFYDYTAKY-TVGKTRYLVPAPLPESQYKAIQQAAVASY 242
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
LG AR+D F+ + + + F ++N I GM +TS L + A+
Sbjct: 243 ASLGCRGAARVD--FMVTDDNFY----------------FLEVNTIPGMTETSLLPKAAA 284
Query: 439 KVGFSHSNILRTIIGHA 455
G + ++ I+ A
Sbjct: 285 DCGMDFAKLVEGILDDA 301
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 124/303 (40%), Gaps = 82/303 (27%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L ++ VF+AVHG GEDGT+Q +LE +PYTG GV+AS +DK T +
Sbjct: 52 QLIEKQIDVVFLAVHGRFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMV---- 107
Query: 689 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKL-QCKTL--CVKPARDGCSTGVARL 742
+D + TP +VD+ ++ + QC VKP R+G + G+A
Sbjct: 108 -------------AQDGVTTPAATLVDVNSDVDDIVAQCGHFPQVVKPVREGSTLGIAIA 154
Query: 743 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 802
A++L + + R+ + E +++ E+ S +
Sbjct: 155 NNADELKQAIAQARDYDRRV----------------------LVEDYIDGREVTVSVMN- 191
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
G+ S+ ++P ESG K+ G L
Sbjct: 192 -----------------------GRALSIIEIVP-----ESG-FYDYTAKYTVGKTRYLV 222
Query: 863 PPPASIMSTEALDKCKQRIELIANA-LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921
P P E+ K Q+ + + A L G +R+D V DN +EVNT+PGMT +
Sbjct: 223 PAPLP----ESQYKAIQQAAVASYASLGCRGAARVDFMVTDDN--FYFLEVNTIPGMTET 276
Query: 922 TVL 924
++L
Sbjct: 277 SLL 279
>gi|401678788|ref|ZP_10810743.1| D-alanyl-alanine synthetase A [Enterobacter sp. SST3]
gi|400213979|gb|EJO44910.1| D-alanyl-alanine synthetase A [Enterobacter sp. SST3]
Length = 366
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 107/394 (27%), Positives = 166/394 (42%), Gaps = 59/394 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT--P 136
RVG++ GG SAE +SL SA++++D I V ID+ + ++Q N P
Sbjct: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLNAHDP 64
Query: 137 ADFDFKLESLAQGF------GSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
A ++ G L + A A +D+VFP +HG GEDG +Q +L N
Sbjct: 65 AHIALNPSEISVATVPGVAKGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMAN 124
Query: 190 VPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
+PFVG+ GS AC DK D + + + + + F+ + N + S ++ +L
Sbjct: 125 LPFVGSDVIGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANRDKHSFAQISAEL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ + +A + E D +VVVE ++ G E V
Sbjct: 179 --GLPLFVKPANQGSSVGVSKVTSEAE-FTQAVRLAFE-FDHKVVVEQGIK-GREIECAV 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C VVL ++Y KY+ + P
Sbjct: 234 LGNDFPQASTCGEVVL-----------------NSDFYSYDTKYIDDKGAQVVVPAALDP 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V + IR A +Q LG C AR+D + P + V + T G FT+I++
Sbjct: 277 AVNDKIRAIAIRAYQTLGCCGMARVDVFLTPENEVVINEINTLPG--------FTNISMY 328
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G S+S ++ +I A R
Sbjct: 329 PKLWQAS---------GLSYSELITRLIELALER 353
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 119/315 (37%), Gaps = 62/315 (19%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 101 VVFPIVHGTLGEDGSLQGMLRMANLPFVGSDVIGSAACMDKDVTKRLLRD-AGLNIAPFV 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R D K I EL L VKPA G S GV+++ + T V+
Sbjct: 160 TLTRANRD--KHSFAQISAELG-----LPLFVKPANQGSSVGVSKVTSEAEFTQAVR--- 209
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
L F E D + Q KG
Sbjct: 210 ---------------------------LAF----EFDHKVVVEQGI---------KGR-- 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI V+G S V + + D S + K+ G + P A + DK
Sbjct: 228 --EIECAVLGNDFPQASTCGEVVL--NSDFYSYDTKYIDDKGAQVVVPAA--LDPAVNDK 281
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 936
+ L G +R+D F+ +N EV+I E+NT+PG T + ++ L + +
Sbjct: 282 IRAIAIRAYQTLGCCGMARVDVFLTPEN-EVVINEINTLPGFT--NISMYPKLWQASGLS 338
Query: 937 PHQFFRKVLDLGSER 951
+ ++++L ER
Sbjct: 339 YSELITRLIELALER 353
>gi|386337306|ref|YP_006033475.1| D-alanine--D-alanine ligase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334279942|dbj|BAK27516.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 348
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 169/386 (43%), Gaps = 49/386 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I ++ + Q +S+ PAD D
Sbjct: 8 LLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQSGD---FIKTQEFSSKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G+++ ++ V KL + V VKP G
Sbjct: 124 VAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAE---VNEKL---TYPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E + A ++VG +
Sbjct: 178 SSVGISKADDE-EGLRSAIDLALK-YDSRILIE------TGVNAREIEVGILGNADVQTT 229
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y KY+ ++ P ++ +R A+ F+
Sbjct: 230 LPGEV-----------VKDVAFYDYDAKYI-DNKITMDIPAHIDSSIMEEMRGYATTAFR 277
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G C +R D +FL HV+ ++N + G Q S
Sbjct: 278 AIGGCGLSRCD-FFLTEDGHVY----------------LNELNTMPGFTQWSMYPLLWEN 320
Query: 440 VGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 321 MGLAYSDLIEKLVELAKEMFEKRESH 346
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK++T + L GV
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAMDKISTK---HVLESAGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + L+ + ++ +LT + VKPA G S G+++ A+D
Sbjct: 141 PLVAYVTYVEGADLEKAVAEVNEKLTYP-----VFVKPANMGSSVGISK---ADDEEGLR 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A++ L K R++ +
Sbjct: 193 SAIDLAL--------------------------------------------KYDSRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ + +++ PA I S+
Sbjct: 209 TGVNAREIEVGILGNA-DVQTTLPGEVVKDVAFYDYDAKYIDNKITMDI---PAHIDSS- 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+++ + A+ G SR D F+ D G V + E+NT+PG T + ++ L E
Sbjct: 264 IMEEMRGYATTAFRAIGGCGLSRCDFFLTED-GHVYLNELNTMPGFTQWS--MYPLLWEN 320
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K+++L E F
Sbjct: 321 MGLAYSDLIEKLVELAKEMF 340
>gi|154250263|ref|YP_001411088.1| D-alanyl-alanine synthetase A [Fervidobacterium nodosum Rt17-B1]
gi|171769403|sp|A7HNE8.1|DDL_FERNB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|154154199|gb|ABS61431.1| D-alanine--D-alanine ligase [Fervidobacterium nodosum Rt17-B1]
Length = 316
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 155/392 (39%), Gaps = 86/392 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ +G++ GG S ER IS+ S + + + RN+ + + V N
Sbjct: 1 MYLGVLLGGISREREISIRSGKRIAQAL-------------RNM-GHVVDEIDVDDN--- 43
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
F +KL L + D +F +HG FGEDG +Q +L+ +P+ G+G
Sbjct: 44 -FIYKLSELKK---------------YDALFNILHGTFGEDGKMQAILDSIGIPYTGSGV 87
Query: 198 RACRQAFDKYDASL-------EMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
AFDKY +L + + +P+FLL SE E E + + K+
Sbjct: 88 ETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFLLISSEEFE-ESKIYMIEEKI---GL 143
Query: 251 KVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
VVKP + GSSIG + + ++D+LK + D+ +V E G E T V+
Sbjct: 144 PCVVKPRKEGSSIGTHICFSKEELLDALKNE----FKNYDEMIVQEYI--KGKEITVSVI 197
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
D+ P+ +++R K ++Y KY + P
Sbjct: 198 DINGTPTVLPI--------------LELRPKKLFYDYEAKY-TDGMTEFIIPAELDGETT 242
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
I +++ LG F+RIDG + G F ++N + GM
Sbjct: 243 EKINHAVLKIYKSLGCKHFSRIDGI------------------VKDGVFYFLEVNTLPGM 284
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ S L A+ G S ++ II AC +
Sbjct: 285 TELSDLPMSANAFGISFDELVDLIIKEACRKL 316
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 122/287 (42%), Gaps = 63/287 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL----ALNHLADLGVL 693
+F +HG GEDG +Q++L++ G+PYTG GV S DK +L + +L V+
Sbjct: 57 LFNILHGTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVV 116
Query: 694 TI-NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
I N + E+ ++ I I ++ L C VKP ++G S G +C
Sbjct: 117 KIPNFLLISSEEFEESKIYMIEEKIG--LPC---VVKPRKEGSSIG-THIC--------- 161
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
FS+ +E+L + ++ KN D ++ +
Sbjct: 162 --------------FSK-----------------------EELLDALKNEFKNYDEMIVQ 184
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
+ EITV VI G+ +++P + ++ E K+ G + P + E
Sbjct: 185 EYIKGKEITVSVIDINGT-PTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAE---LDGE 240
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+K + I +L + FSRID V +G +EVNT+PGMT
Sbjct: 241 TTEKINHAVLKIYKSLGCKHFSRIDGIVK--DGVFYFLEVNTLPGMT 285
>gi|134103809|ref|YP_001109470.1| D-alanine--D-alanine ligase [Saccharopolyspora erythraea NRRL 2338]
gi|133916432|emb|CAM06545.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL
2338]
Length = 315
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 38/295 (12%)
Query: 165 DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF 224
D V +HG GE+G +Q VL+ Y +P+VGT RACR+A+DK A E+++ G +T P +
Sbjct: 57 DAVVVALHGGEGENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSG-LTTPDW 115
Query: 225 LLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283
++ EL V + L G +++KP + GS++G V D G +
Sbjct: 116 VVL-PHATFRELGAQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAMVGALS 174
Query: 284 EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFN 343
G D V+VE ++E G+E VLD G + P +V + + +++
Sbjct: 175 YG--DTVLVEKYIE-GTEVAIGVLDGPDGPEALP--------------AVQIEATNGVYD 217
Query: 344 YRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSS 403
Y +Y Y TP + + A + LGL D +R D
Sbjct: 218 YTARYT-AGLTTYRTPAELSPETAAAAGDLAVAAHRLLGLRDVSRTDAII---------- 266
Query: 404 SETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
GT+ F ++N+ G+ +TS L G S ++ T++ A SR
Sbjct: 267 -------DRDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGDVFATLVERAISR 314
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 58/297 (19%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
++ +E V +A+HGG GE+G +QS+L+ G+PY G A + DK A LA
Sbjct: 50 RIEQERPDAVVVALHGGEGENGAVQSVLDMYGIPYVGTDPRACRRAWDK---PTAKAELA 106
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
G+ T + V + + L +KL L +KP + G + G + A DL
Sbjct: 107 RSGLTTPDWVVLPHATFRELGAQSVLDALVAKLGLP-LMLKPDQGGSALGARVVRDAADL 165
Query: 749 -TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
+ V AL ++G + ++ E ++E
Sbjct: 166 PSAMVGAL--------------SYG---------DTVLVEKYIEG--------------- 187
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
E+ +GV+ +L P+V ++ + + ++ G TP +
Sbjct: 188 ----------TEVAIGVLDGPDGPEAL-PAVQIEATNGVYDYTARYTAGLTTYRTP---A 233
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+S E L L SR DA ++ D G V +EVN PG+T +++L
Sbjct: 234 ELSPETAAAAGDLAVAAHRLLGLRDVSRTDAIIDRD-GTVHFLEVNVSPGLTETSLL 289
>gi|421532541|ref|ZP_15978899.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae STIR-CD-17]
gi|403642210|gb|EJZ03072.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae STIR-CD-17]
Length = 348
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 174/396 (43%), Gaps = 69/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + S ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D D + S+ + A IVFP +HG GEDG IQ LE +P+V
Sbjct: 68 NQTVDLDKMVRP--------SDIYDDNA----IVFPVLHGPMGEDGSIQGFLEVLRMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ----GSEVNESELSNWFVTNKLDPNS 249
GT + A DK ++ G VP Q G ++ + + L+ S
Sbjct: 116 GTNILSSSVAMDKITTKQVLATVG---VPQVAYQTYFEGDDLEHA------IKLSLETLS 166
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ VKP GSS+G++ A SL+ A + L+ D R+++E +G TA ++V
Sbjct: 167 FPIFVKPANMGSSVGISKATDE-SSLRSAIDLALK-YDSRILIE---QG---VTAREIEV 218
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +L +V+ F G V V++ D ++Y KY+ ++ P + + +
Sbjct: 219 G--------ILGNNDVKTTFPGEV-VKDVD-FYDYDAKYI-DNKITMDIPAKVDEATMEA 267
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ AS F+ +G C +R D +FL T+ G I ++N + G Q
Sbjct: 268 MRQYASKAFKAIGTCGLSRCD-FFL----------------TKDGQIFLNELNTMPGFTQ 310
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G ++S+++ ++ A F S+
Sbjct: 311 WSMYPLLWENMGLTYSDLIEKLVMLAKEMFEKRESH 346
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 127/324 (39%), Gaps = 78/324 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
++ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA +GV
Sbjct: 84 DDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKQV---LATVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDL 748
+ + D D+ H + KL +TL VKPA G S G++
Sbjct: 141 PQVAYQTYFEGD-------DLEHAI--KLSLETLSFPIFVKPANMGSSVGIS-------- 183
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
KA +E LR I++ K R
Sbjct: 184 ----KATDESSLR----------SAIDL-------------------------ALKYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G + + P VK+ D + K+ P
Sbjct: 205 ILIEQGVTAREIEVGILGN-NDVKTTFPGEVVKDV-DFYDYDAKYIDNKITMDIPAKVDE 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV----- 923
+ EA+ +Q A+ G SR D F+ D G++ + E+NT+PG T ++
Sbjct: 263 ATMEAM---RQYASKAFKAIGTCGLSRCDFFLTKD-GQIFLNELNTMPGFTQWSMYPLLW 318
Query: 924 ----LIHQALSEQPPMYPHQFFRK 943
L + L E+ M + F K
Sbjct: 319 ENMGLTYSDLIEKLVMLAKEMFEK 342
>gi|22536931|ref|NP_687782.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae 2603V/R]
gi|25010842|ref|NP_735237.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae NEM316]
gi|76787870|ref|YP_329514.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae A909]
gi|76798442|ref|ZP_00780681.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
agalactiae 18RS21]
gi|77406739|ref|ZP_00783776.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B]
gi|77409084|ref|ZP_00785800.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1]
gi|77414685|ref|ZP_00790819.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515]
gi|406709259|ref|YP_006763985.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae
GD201008-001]
gi|421146778|ref|ZP_15606481.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae GB00112]
gi|424049666|ref|ZP_17787217.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae ZQ0910]
gi|39930893|sp|Q8E0G6.1|DDL_STRA5 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|39930895|sp|Q8E640.1|DDL_STRA3 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|123602002|sp|Q3K1T9.1|DDL_STRA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|22533783|gb|AAM99654.1|AE014226_14 D-alanine--D-alanine ligase [Streptococcus agalactiae 2603V/R]
gi|23095221|emb|CAD46431.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562927|gb|ABA45511.1| D-alanine--D-alanine ligase [Streptococcus agalactiae A909]
gi|76586204|gb|EAO62723.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
agalactiae 18RS21]
gi|77159263|gb|EAO70440.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515]
gi|77172301|gb|EAO75454.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1]
gi|77174644|gb|EAO77476.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B]
gi|389648939|gb|EIM70428.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae ZQ0910]
gi|401686485|gb|EJS82462.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae GB00112]
gi|406650144|gb|AFS45545.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae
GD201008-001]
Length = 348
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 174/396 (43%), Gaps = 69/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + S ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D D + S+ + A IVFP +HG GEDG IQ LE +P+V
Sbjct: 68 NQTVDLDKMVRP--------SDIYDDNA----IVFPVLHGPMGEDGSIQGFLEVLRMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ----GSEVNESELSNWFVTNKLDPNS 249
GT + A DK ++ G VP Q G ++ + + L+ S
Sbjct: 116 GTNILSSSVAMDKITTKQVLATVG---VPQVAYQTYFEGDDLEHA------IKLSLETLS 166
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ VKP GSS+G++ A SL+ A + L+ D R+++E +G TA ++V
Sbjct: 167 FPIFVKPANMGSSVGISKATDE-SSLRSAIDLALK-YDSRILIE---QG---VTAREIEV 218
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +L +V+ F G V V++ D ++Y KY+ ++ P + + +
Sbjct: 219 G--------ILGNNDVKTTFPGEV-VKDVD-FYDYDAKYI-DNKITMDIPAKVDEATMEA 267
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ AS F+ +G C +R D +FL T+ G I ++N + G Q
Sbjct: 268 MRQYASKAFKAIGACGLSRCD-FFL----------------TKDGQIFLNELNTMPGFTQ 310
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G ++S+++ ++ A F S+
Sbjct: 311 WSMYPLLWENMGLTYSDLIEKLVMLAKEMFEKRESH 346
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 127/324 (39%), Gaps = 78/324 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
++ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA +GV
Sbjct: 84 DDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTK---QVLATVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDL 748
+ + D D+ H + KL +TL VKPA G S G++
Sbjct: 141 PQVAYQTYFEGD-------DLEHAI--KLSLETLSFPIFVKPANMGSSVGIS-------- 183
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
KA +E LR I++ K R
Sbjct: 184 ----KATDESSLR----------SAIDL-------------------------ALKYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G + + P VK+ D + K+ P
Sbjct: 205 ILIEQGVTAREIEVGILGN-NDVKTTFPGEVVKDV-DFYDYDAKYIDNKITMDIPAKVDE 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV----- 923
+ EA+ +Q A+ G SR D F+ D G++ + E+NT+PG T ++
Sbjct: 263 ATMEAM---RQYASKAFKAIGACGLSRCDFFLTKD-GQIFLNELNTMPGFTQWSMYPLLW 318
Query: 924 ----LIHQALSEQPPMYPHQFFRK 943
L + L E+ M + F K
Sbjct: 319 ENMGLTYSDLIEKLVMLAKEMFEK 342
>gi|425901538|ref|ZP_18878129.1| D-alanine--D-alanine ligase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397883234|gb|EJK99720.1| D-alanine--D-alanine ligase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 364
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/394 (27%), Positives = 167/394 (42%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
LRVG+I GG SAE +SL SAR+++D + + ID+N + + ++ N
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSARNIVDALDRERFEPVLIGIDKNGHWHLNDTSNFLINQEN 63
Query: 136 PA--DFDFKLESLAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA + LA G S+ ++ L +VD++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNRSNRELAVVPGKASQQLVETSSQELLGHVDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK + + G P L + ++ + +KL
Sbjct: 124 DLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFITLNRATAARTDFAQ--AQSKL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTA 304
+ VKP GSS+GV+ V + + I L G D++V+VEL + G E
Sbjct: 179 GL---PMFVKPANQGSSVGVS---KVTSAAEYHAAIELALGFDEKVLVELAVS-GREIEC 231
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G D P+ G ++ ++Y KY+ Q P
Sbjct: 232 AVL----GND-QPIA----------SGCGEIVVGSGFYSYDSKYIDDQAAQVVVPADLSE 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V IR A FQ LG AR+D + T+ G +L +IN +
Sbjct: 277 EVSERIRTLAVEAFQVLGCSGLARVDVFL-----------------TQGGEVLINEINSL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + VG ++S ++ +I A R
Sbjct: 320 PGFTRISMYPKLWQAVGMTYSELVSRLIELALER 353
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 109/460 (23%), Positives = 175/460 (38%), Gaps = 114/460 (24%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRERFEPVLIG--IDKNGHWHLNDT---SNF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A+ Q+V + L H D
Sbjct: 58 LINQENPALIALNRSNREL------AVVPGKAS------QQLVETSSQELLGH-----VD 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNH--LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
CMDK + L LA +T+N+ + D + + SKL + VKPA
Sbjct: 138 CMDKDISKRLLRDAGLAVTPFITLNRATAARTD---------FAQAQSKLGLP-MFVKPA 187
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV+++ A + H IE+ E ++ E V
Sbjct: 188 NQGSSVGVSKVTSAAEY----------------------HAAIELALGFDEKVLVELAVS 225
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
EI + D+ + G EI VG SG S +
Sbjct: 226 GREI----ECAVLGNDQPIASGCG---EIVVG-------------------SG-FYSYDS 258
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ + P + +S E ++ + L G +R+D F+ GEVLI E
Sbjct: 259 KYIDDQAAQVVVP--ADLSEEVSERIRTLAVEAFQVLGCSGLARVDVFLT-QGGEVLINE 315
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
+N++PG T + ++ L + M + ++++L ER
Sbjct: 316 INSLPGFT--RISMYPKLWQAVGMTYSELVSRLIELALER 353
>gi|306830913|ref|ZP_07464075.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|336063866|ref|YP_004558725.1| D-alanine-D-alanine ligase [Streptococcus pasteurianus ATCC 43144]
gi|304426936|gb|EFM30046.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|334282066|dbj|BAK29639.1| D-alanine-D-alanine ligase [Streptococcus pasteurianus ATCC 43144]
Length = 348
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 169/386 (43%), Gaps = 49/386 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I ++ + Q +S+ PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGD---FIKTQEFSSKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G+++ ++ V KL + V VKP G
Sbjct: 124 VAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAE---VNEKL---TYPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E + A ++VG +
Sbjct: 178 SSVGISKADDE-EGLRSAIDLALK-YDSRILIE------TGVNAREIEVGILGNADVQTT 229
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y KY+ ++ P ++ +R A+ F+
Sbjct: 230 LPGEV-----------VKDVAFYDYDAKYI-DNKITMDIPAHIDSSIMEEMRGYATTAFR 277
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G C +R D +FL HV+ ++N + G Q S
Sbjct: 278 AIGGCGLSRCD-FFLTEDGHVY----------------LNELNTMPGFTQWSMYPLLWEN 320
Query: 440 VGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 321 MGLAYSDLIEKLVELAKEMFEKRESH 346
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK++T + L GV
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAMDKISTK---HVLESAGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + L+ + ++ +LT + VKPA G S G+++ A+D
Sbjct: 141 PLVAYVTYVEGADLEKAVAEVNEKLTYP-----VFVKPANMGSSVGISK---ADDEEGLR 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A++ L K R++ +
Sbjct: 193 SAIDLAL--------------------------------------------KYDSRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ + +++ PA I S+
Sbjct: 209 TGVNAREIEVGILGNA-DVQTTLPGEVVKDVAFYDYDAKYIDNKITMDI---PAHIDSS- 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+++ + A+ G SR D F+ D G V + E+NT+PG T + ++ L E
Sbjct: 264 IMEEMRGYATTAFRAIGGCGLSRCDFFLTED-GHVYLNELNTMPGFTQWS--MYPLLWEN 320
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K+++L E F
Sbjct: 321 MGLAYSDLIEKLVELAKEMF 340
>gi|225552328|ref|ZP_03773268.1| D-alanine--D-alanine ligase [Borrelia sp. SV1]
gi|225371326|gb|EEH00756.1| D-alanine--D-alanine ligase [Borrelia sp. SV1]
Length = 361
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 165/395 (41%), Gaps = 64/395 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + SN P +
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSV--SNPPKPIN 64
Query: 141 FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
+ + L F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 65 TDVLPIVSLLPGLGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGS 124
Query: 201 RQAFDKYDASLEMSKQGFITVP-------SFLLQGSEV--NESELSNWFVTNKLDPNSGK 251
+ +KY L + VP + L E+ N E+ +
Sbjct: 125 AISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGY-----------P 173
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
V+VKP GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 174 VIVKPAVLGSSIGINVAY----SENQIESFIKEALRYDLAIVIEKFIEAREIECSIIGNE 229
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVV 366
+ P EV +Q D IF +Y KY +P + ++ P
Sbjct: 230 KMK------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQ 273
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ SI+E A L ++ L L AR+D +F+ + GTI +IN I G
Sbjct: 274 LLSIKEYAFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIPG 317
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
S + S G +++ +I +A + N
Sbjct: 318 FTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|421749318|ref|ZP_16186774.1| D-alanine--D-alanine ligase [Cupriavidus necator HPC(L)]
gi|409771839|gb|EKN54023.1| D-alanine--D-alanine ligase [Cupriavidus necator HPC(L)]
Length = 330
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 151/377 (40%), Gaps = 75/377 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S + VL +Q R ++A+A A
Sbjct: 16 KVGVLMGGRSAEREISLLSGQGVLAALQ-----------SRGVDAHAFDPA--------- 55
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
QG L+ AA D VF +HGR+GEDG +Q +LE+ +P+ G+G
Sbjct: 56 --------VQGVAELA------AAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYSGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK S G T P F + ++ E E L ++VKP R
Sbjct: 102 ASALAMDKPATKRLWSTHGLPT-PRFAMLTADCTEREFDAVVADLGL-----PLIVKPAR 155
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIG+T S +A +D+ V+ E F++ G+E T + VG G D
Sbjct: 156 EGSSIGLTKVTNA--SQMRAAYEKAAALDNDVIAEAFID-GAELTCPI--VGEGRDAR-- 208
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
LP + + DA ++Y+ KY T Y P + +R A F
Sbjct: 209 -ALPV---------IRIVAPDANYDYQNKYF-TDVTQYLCPANLGEELEQRVRSLAVEAF 257
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG +AR D T G ++N GM S + A
Sbjct: 258 RVLGCRGWARADVML-----------------TADGQPYLLEMNTSPGMTGHSLVPMSAR 300
Query: 439 KVGFSHSNILRTIIGHA 455
G S+ + + ++ A
Sbjct: 301 AAGISYEDFVLQVVAAA 317
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNH 686
+LA VFIA+HG GEDGT+Q LLE G+PY+G GV+AS MDK AT + +
Sbjct: 61 ELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYSGSGVLASALAMDKPATKRLWSTHG 120
Query: 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
L + D +E + D+ L VKPAR+G S G+ ++ A
Sbjct: 121 LPTPRFAMLTADCTERE--FDAVVADL---------GLPLIVKPAREGSSIGLTKVTNAS 169
Query: 747 DL-TVYVKA 754
+ Y KA
Sbjct: 170 QMRAAYEKA 178
>gi|348169221|ref|ZP_08876115.1| D-alanyl-alanine synthetase A [Saccharopolyspora spinosa NRRL
18395]
Length = 363
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 163/412 (39%), Gaps = 78/412 (18%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI------------------ 117
R RV ++ GG S E GIS SA SVL H+ D + I
Sbjct: 4 RKTRVAVVFGGRSTEHGISCVSAGSVLAHLDQDRFEILPVGITREGAWVLGTDDPKQLEI 63
Query: 118 -DRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFG 176
DR A ++A V P + L +G LS +VD+VFP +HG FG
Sbjct: 64 RDRQAPEVAANTAVVLPGDPTRRELVLLEPGRGGEVLS--------SVDVVFPVLHGAFG 115
Query: 177 EDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236
EDG IQ +LE +VP+VG G + + DK E +K+ +G EV E+
Sbjct: 116 EDGTIQGLLEMADVPYVGPGVLSSAVSMDK-----EYTKK------LLAAEGLEVGRYEV 164
Query: 237 SNWFVTNKLDPNSGK----VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRV 290
+ D + V VKP RAGSS+G+T +D I E D +V
Sbjct: 165 LRRHQSTLDDAQRERLGLPVFVKPARAGSSLGIT----KVDDWADLDAAIAEARRTDPKV 220
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
++E +A+ VG +C + +E + V + ++Y KYL
Sbjct: 221 IIE---------SAV---VGREIECGVLEFPDGRIEASQPAELRVTGESDWYDYESKYL- 267
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
+ P + I +R+ A F+ L AR+D +FL
Sbjct: 268 DDVTEFDIPAKIGDDAIEELRDAAVRAFRALECQGLARVD-FFL---------------- 310
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
E G ++ ++N + G S + + G + +L T+I A +R L
Sbjct: 311 AEDGGLIVNEVNTMPGFTAISLYPRMWAHTGIDYPTLLTTLIETAITRGTGL 362
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE VPY GPGV++S MDK T LA G+
Sbjct: 106 VFPVLHGAFGEDGTIQGLLEMADVPYVGPGVLSSAVSMDKEYTK---KLLAAEGLEVGRY 162
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+V R+ ++ + D E +L VKPAR G S G+ ++ DL
Sbjct: 163 EVLRRH---QSTLDDAQRE---RLGLPVF-VKPARAGSSLGITKVDDWADL 206
>gi|325977796|ref|YP_004287512.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325177724|emb|CBZ47768.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 347
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 167/380 (43%), Gaps = 49/380 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I ++ + Q +S+ PAD D
Sbjct: 8 LLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQSGD---FIKTQEFSSKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G+++ ++ V KL + V VKP G
Sbjct: 124 VAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAE---VNEKL---TYPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E + A ++VG +
Sbjct: 178 SSVGISKADDE-EGLRSAIDLALK-YDSRILIE------TGVNAREIEVGILGNADVQTT 229
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y KY+ ++ P ++ +R A+ F+
Sbjct: 230 LPGEV-----------VKDVAFYDYDAKYI-DNKITMDIPAHIDSSIMEEMRGYATTAFR 277
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G C +R D +FL HV+ ++N + G Q S
Sbjct: 278 AIGGCGLSRCD-FFLTEDGHVY----------------LNELNTMPGFTQWSMYPLLWEN 320
Query: 440 VGFSHSNILRTIIGHACSRF 459
+G ++S+++ ++ A F
Sbjct: 321 MGLAYSDLIEKLVELAKEMF 340
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK++T + L GV
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAMDKISTK---HVLESAGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + L+ + ++ +LT + VKPA G S G+++ A+D
Sbjct: 141 PLVAYVTYVEGADLEKAVAEVNEKLTYP-----VFVKPANMGSSVGISK---ADDEEGLR 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A++ L K R++ +
Sbjct: 193 SAIDLAL--------------------------------------------KYDSRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ + +++ PA I S+
Sbjct: 209 TGVNAREIEVGILGNA-DVQTTLPGEVVKDVAFYDYDAKYIDNKITMDI---PAHIDSS- 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+++ + A+ G SR D F+ D G V + E+NT+PG T + ++ L E
Sbjct: 264 IMEEMRGYATTAFRAIGGCGLSRCDFFLTED-GHVYLNELNTMPGFTQWS--MYPLLWEN 320
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K+++L E F
Sbjct: 321 MGLAYSDLIEKLVELAKEMF 340
>gi|339301754|ref|ZP_08650840.1| D-alanine-D-alanine ligase [Streptococcus agalactiae ATCC 13813]
gi|319744789|gb|EFV97129.1| D-alanine-D-alanine ligase [Streptococcus agalactiae ATCC 13813]
Length = 348
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 172/392 (43%), Gaps = 61/392 (15%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + S ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D D + S+ + A IVFP +HG GEDG IQ LE +P+V
Sbjct: 68 NQTVDLDKMVRP--------SDIYDDDA----IVFPVLHGPMGEDGSIQGFLEVLRMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
GT + A DK ++ G VP Q E + + L+ S +
Sbjct: 116 GTNILSSSVAMDKITTKQVLATVG---VPQVAYQ--TYFEGDNLEHAIKLSLETLSFPIF 170
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP GSS+G++ A SL+ A + L+ D R+++E +G TA ++VG
Sbjct: 171 VKPANMGSSVGISKATDE-SSLRSAIDLALK-YDSRILIE---QG---VTAREIEVG--- 219
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
+L +V+ F G V V++ D ++Y KY+ ++ P + + ++R+
Sbjct: 220 -----ILGNNDVKTTFPGEV-VKDVD-FYDYDAKYI-DNKITMDIPAKVDEATMEAMRQY 271
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
AS F+ +G C +R D +FL T+ G I ++N + G Q S
Sbjct: 272 ASKAFKAIGACGLSRCD-FFL----------------TKDGQIFLNELNTMPGFTQWSMY 314
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 315 PLLWENMGLTYSDLIEKLVMLAKEMFEKRESH 346
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 126/324 (38%), Gaps = 78/324 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
++ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA +GV
Sbjct: 84 DDDAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTK---QVLATVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDL 748
+ + D L+ I KL +TL VKPA G S G++
Sbjct: 141 PQVAYQTYFEGDNLEHAI---------KLSLETLSFPIFVKPANMGSSVGIS-------- 183
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
KA +E LR I++ K R
Sbjct: 184 ----KATDESSLR----------SAIDL-------------------------ALKYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G + + P VK+ D + K+ P
Sbjct: 205 ILIEQGVTAREIEVGILGN-NDVKTTFPGEVVKDV-DFYDYDAKYIDNKITMDIPAKVDE 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV----- 923
+ EA+ +Q A+ G SR D F+ D G++ + E+NT+PG T ++
Sbjct: 263 ATMEAM---RQYASKAFKAIGACGLSRCDFFLTKD-GQIFLNELNTMPGFTQWSMYPLLW 318
Query: 924 ----LIHQALSEQPPMYPHQFFRK 943
L + L E+ M + F K
Sbjct: 319 ENMGLTYSDLIEKLVMLAKEMFEK 342
>gi|399037220|ref|ZP_10734099.1| D-alanine--D-alanine ligase [Rhizobium sp. CF122]
gi|398065212|gb|EJL56863.1| D-alanine--D-alanine ligase [Rhizobium sp. CF122]
Length = 367
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 169/394 (42%), Gaps = 59/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYA--ISSAQV 131
LRV ++ GG S E +S+ SA +V++ + D V ++ + L A +++A V
Sbjct: 17 LRVAVLFGGRSPEHDVSILSATNVVNALDPDRYDVLPVFVTKEGQWLLTARQTELATAAV 76
Query: 132 YSNTPADFDFKLESLAQGFGSLSEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVLEK 187
S+ P +L L G G L ++ A +DI+FP +HG GEDG +Q +
Sbjct: 77 ASDAP-----ELALLPGGRGRLLAIPQNAAPYEVPPIDILFPVLHGMHGEDGSVQGLAAV 131
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
+P G G A DK A + + G + ++ +++ S V +L
Sbjct: 132 ARMPLAGCGILGSATAIDKNIAKRLLKEAGLPVAKAVCIE----QDAQQSFDDVVKEL-- 185
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGS-EFTA 304
+ +KP R GSS+GV+ G +S A + EG D++++ E F+ G EF+
Sbjct: 186 -GLPLFIKPARQGSSVGVSKVTGA-ESFAAA---LAEGFRHDNKLLAEEFIAGREIEFSV 240
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
+ GS F V LP G + E ++Y KY+ A P + P
Sbjct: 241 LEHADGSLF-----VSLP--------GEIAPAEAHGFYSYEAKYIDENGAALRVPAQLPK 287
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ + +R A+ F+ LG AR+D + P + V + ++N I
Sbjct: 288 EIEDELRRTAANAFKALGCDGMARVDFFLTPDMSFVVN-----------------ELNTI 330
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G S + + G S++ +L +I A SR
Sbjct: 331 PGFTNISMYAKAMAASGVSYAEVLDRLIERALSR 364
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 60/283 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG++Q L +P G G++ S T +DK ++A L + G L + K
Sbjct: 111 LFPVLHGMHGEDGSVQGLAAVARMPLAGCGILGSATAIDK---NIAKRLLKEAG-LPVAK 166
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V ++D ++ D+ EL L +KPAR G S GV+++ AE + AL E
Sbjct: 167 AVCIEQDAQQS-FDDVVKELG-----LPLFIKPARQGSSVGVSKVTGAES---FAAALAE 217
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
F + L+ E F+ EI F S ++AD
Sbjct: 218 --------GFRHDNK-----------LLAEEFIAGREIEF---SVLEHAD---------- 245
Query: 818 VEITVGVIGKCGSMHSLMP-SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
GS+ +P + E+ S E K+ G L P + + E D+
Sbjct: 246 -----------GSLFVSLPGEIAPAEAHGFYSYEAKYIDENGAALRVP--AQLPKEIEDE 292
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
++ AL +G +R+D F+ D V + E+NT+PG T
Sbjct: 293 LRRTAANAFKALGCDGMARVDFFLTPDMSFV-VNELNTIPGFT 334
>gi|238853210|ref|ZP_04643596.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
gi|282852441|ref|ZP_06261783.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
224-1]
gi|311111376|ref|ZP_07712773.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
gi|190359189|sp|Q046V3.2|DDL_LACGA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|238834185|gb|EEQ26436.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
gi|282556183|gb|EFB61803.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
224-1]
gi|311066530|gb|EFQ46870.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
Length = 361
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 52/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSNTP 136
++VGLI GG S+E +S+ SA ++ + I + V +I + A S +V N
Sbjct: 5 IKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNP- 63
Query: 137 ADFDFKLE-SLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
K+E + ++S E +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 64 -----KMEVANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGK 251
A DK + + G ++ E N+ ++L +V ++L
Sbjct: 119 DDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQL---GSD 175
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
+ VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 176 LFVKPSNQGSSVGVS----HVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL--- 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ + KD+ + Y KY P + P ++
Sbjct: 229 --GND-KPIVAGVGQI---------INAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEK 276
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A +FQ ARID TE ++ T++N + G
Sbjct: 277 VRKNALKVFQATECSGLARIDSML----------------RTEDKEVVLTEVNALPGFTN 320
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + +VG +++++ +I +A R+
Sbjct: 321 ISMYPKLFEEVGIPYTDLITKLIDYAMERY 350
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 102/461 (22%), Positives = 172/461 (37%), Gaps = 117/461 (25%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+V +IFGG++SE +VS+MS N++ + N +V P + + G AN D+
Sbjct: 6 KVGLIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWI-----TNDGYLAN----DAD 55
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR V P +E P + A S++
Sbjct: 56 SRKVLDNP---------------KMEVANPHKVANISNIV-------------------- 80
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
EL R I+ F VHG +GEDG LQ L P+ G V+A+
Sbjct: 81 ----ELKDRPEID-----------VFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAA 125
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPA 731
MDK T + LA + + K + K P + + +E + L VKP+
Sbjct: 126 VTMDKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPS 181
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV+ + ++ V AL E F
Sbjct: 182 NQGSSVGVSHVTNEKEYKV---ALAEA------------------------------FKY 208
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
D++L + + GN + + VG I + K+S + E
Sbjct: 209 DDKVLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYEN 253
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ + L P + + ++K ++ + A + G +RID+ + ++ EV++ E
Sbjct: 254 KYDDNSTSTLEIP--AKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEDKEVVLTE 311
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
VN +PG T + ++ L E+ + K++D ER+
Sbjct: 312 VNALPGFT--NISMYPKLFEEVGIPYTDLITKLIDYAMERY 350
>gi|295397629|ref|ZP_06807704.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563]
gi|294974092|gb|EFG49844.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563]
Length = 350
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 159/383 (41%), Gaps = 44/383 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ + ++ GG SAE IS+ +A +++ +IQ D V YIDR + + + A
Sbjct: 1 MEIIVLFGGKSAEHDISILTATAIMQNIQYDRHSVTPVYIDRQ--GHWFKGSNMTEKPDA 58
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+F+L+ + Q E IVFP +HG GEDG IQ + E NV +VG G
Sbjct: 59 QVNFQLDQVGQAIVPTDVLLE---GTDQIVFPALHGPNGEDGTIQGLFESLNVAYVGAGV 115
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSE-VNESELSNWFVTNKLDPNSGKVVVKP 256
A DK + +++ G VP L E + E++ VTN+L + V VKP
Sbjct: 116 LASSAGMDKIVSKHLLNQAGLPQVPFVALTSYEWEKDQEVAIEKVTNEL---AYPVFVKP 172
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+GV+ A + D+ A + D RV+VE ++ E +L F
Sbjct: 173 ANMGSSVGVSEA--IDDASLLAALTLAFRYDRRVLVETSVQNPREVELAILGNDEVF--- 227
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
V +P E + + +NY KYL +++ +I E
Sbjct: 228 --VSVPGE----------LAKGQGFYNYEEKYLKNTT---------EMIIPAAIDEPTVA 266
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
Q F +DG L S + TE G I ++N + G Q S
Sbjct: 267 KLQDYARKAFLALDGSGL---------SRADFFLTETGEIYINEVNTLPGFTQFSMYPSL 317
Query: 437 ASKVGFSHSNILRTIIGHACSRF 459
G S++++L +I SR+
Sbjct: 318 WEASGKSYADLLEELIQLGLSRY 340
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF A+HG GEDGT+Q L E+ V Y G GV+AS MDK+ + LN V +
Sbjct: 85 VFPALHGPNGEDGTIQGLFESLNVAYVGAGVLASSAGMDKIVSKHLLNQAGLPQVPFVAL 144
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
E + I + +EL + VKPA G S GV+
Sbjct: 145 TSYEWEKDQEVAIEKVTNEL-----AYPVFVKPANMGSSVGVSE 183
>gi|118589872|ref|ZP_01547276.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614]
gi|118437369|gb|EAV44006.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614]
Length = 358
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 157/388 (40%), Gaps = 49/388 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRV ++ GG SAE +S+ SA +V+ + Y+ + +S + T
Sbjct: 8 LRVAILFGGRSAEHEVSVLSATNVMHALDPSKYDAVPIYVTLE-GQWLVSRFENGKLTRP 66
Query: 138 DFDFKLESLAQGFGSLSEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
++ + G G + E H AN+D +FP +HG GEDG +Q + E VP V
Sbjct: 67 STGTEICLVPGGMGRVVALDEGGRSHDLANLDALFPVLHGLHGEDGAVQGLAEVARVPLV 126
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G G A DK A + + G S + EV F T K D +
Sbjct: 127 GCGIAGSANALDKDLAKRLLIEAGLPAARSITIHPHEV------PAFETLKKDLGL-PIF 179
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGS-EFTAIVLDVG 310
+KP R GSS+GV+ D K + EG D++++ E F+ G EF + G
Sbjct: 180 IKPARQGSSVGVSKVMTAADF----KAAVQEGFKHDNKLLAEEFVLGREIEFAVLEECDG 235
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
+ F P ++P E + Y KY+ A P P V N +
Sbjct: 236 TLFVSRPGEIVPA-------------ESHGFYTYDAKYVDEDGAALKVPAELPGEVENRM 282
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
++ A+ F+ LG AR+D +FL T+ +L ++N I G
Sbjct: 283 KDLAAKAFRALGCDGMARVD-FFL----------------TQDMNVLINELNTIPGFTNI 325
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G ++ I+ +I H +R
Sbjct: 326 SMYSKAMAASGINYPEIIDRLIAHGIAR 353
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 120/312 (38%), Gaps = 75/312 (24%)
Query: 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV- 692
N +F +HG GEDG +Q L E VP G G+ S +DK LA L + G+
Sbjct: 96 NLDALFPVLHGLHGEDGAVQGLAEVARVPLVGCGIAGSANALDK---DLAKRLLIEAGLP 152
Query: 693 ----LTIN-KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
+TI+ +V E L K + I+ +KPAR G S GV+++ A D
Sbjct: 153 AARSITIHPHEVPAFETLKKDLGLPIF-------------IKPARQGSSVGVSKVMTAAD 199
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
V Q K+ +
Sbjct: 200 FKAAV-----------------------------------------------QEGFKHDN 212
Query: 808 RLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTV-KESGDILSLEEKFQGGTGINLTPPP 865
+L+ + EI V+ +C G++ P V ES + + K+ G L P
Sbjct: 213 KLLAEEFVLGREIEFAVLEECDGTLFVSRPGEIVPAESHGFYTYDAKYVDEDGAALKVP- 271
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 925
+ + E ++ K AL +G +R+D F+ D VLI E+NT+PG T + +
Sbjct: 272 -AELPGEVENRMKDLAAKAFRALGCDGMARVDFFLTQDM-NVLINELNTIPGFT-NISMY 328
Query: 926 HQALSEQPPMYP 937
+A++ YP
Sbjct: 329 SKAMAASGINYP 340
>gi|77412467|ref|ZP_00788770.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111]
gi|77161485|gb|EAO72493.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111]
Length = 348
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 174/396 (43%), Gaps = 69/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + S ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D D + S+ + A IVFP +HG GEDG IQ LE +P+V
Sbjct: 68 NQTVDLDKMVRP--------SDIYDDNA----IVFPVLHGPMGEDGSIQGFLEVLRMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ----GSEVNESELSNWFVTNKLDPNS 249
GT + A DK ++ G VP Q G ++ + + L+ S
Sbjct: 116 GTNILSSSVAMDKITTKQVLATVG---VPQVAYQTYFEGDDLEHA------IKLSLETLS 166
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ VKP GSS+G++ A SL+ A + L+ D R+++E +G TA ++V
Sbjct: 167 FPIFVKPANMGSSVGISKATDE-SSLRSAIDLALK-YDSRILIE---QG---VTAREIEV 218
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +L +V+ F G V V++ D ++Y KY+ ++ P + + +
Sbjct: 219 G--------ILGNNDVKTTFPGEV-VKDVD-FYDYDAKYI-DNKIIMDIPAKVDEATMEA 267
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ AS F+ +G C +R D +FL T+ G I ++N + G Q
Sbjct: 268 MRQYASKAFKAIGACGLSRCD-FFL----------------TKDGQIFLNELNTMPGFTQ 310
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G ++S+++ ++ A F S+
Sbjct: 311 WSMYPLLWENMGLTYSDLIEKLVMLAKEMFEKRESH 346
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 128/324 (39%), Gaps = 78/324 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
++ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA +GV
Sbjct: 84 DDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTK---QVLATVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDL 748
+ + D D+ H + KL +TL VKPA G S G++
Sbjct: 141 PQVAYQTYFEGD-------DLEHAI--KLSLETLSFPIFVKPANMGSSVGIS-------- 183
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
KA +E LR I++ K R
Sbjct: 184 ----KATDESSLR----------SAIDL-------------------------ALKYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G + + P VK+ D + K+ I P
Sbjct: 205 ILIEQGVTAREIEVGILGN-NDVKTTFPGEVVKDV-DFYDYDAKYIDNKIIMDIPAKVDE 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV----- 923
+ EA+ +Q A+ G SR D F+ D G++ + E+NT+PG T ++
Sbjct: 263 ATMEAM---RQYASKAFKAIGACGLSRCDFFLTKD-GQIFLNELNTMPGFTQWSMYPLLW 318
Query: 924 ----LIHQALSEQPPMYPHQFFRK 943
L + L E+ M + F K
Sbjct: 319 ENMGLTYSDLIEKLVMLAKEMFEK 342
>gi|216264818|ref|ZP_03436810.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
burgdorferi 156a]
gi|215981291|gb|EEC22098.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
burgdorferi 156a]
Length = 361
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 167/396 (42%), Gaps = 66/396 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +++VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEINVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP-------SFLLQGSEV--NESELSNWFVTNKLDPNSG 250
+ +KY L + VP + L E+ N E+ +
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGY----------- 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLD 308
V+VKP GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 173 PVIVKPAVLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGN 228
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIV 365
+ P EV +Q D IF +Y KY +P + ++ P
Sbjct: 229 EKMK------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETN 272
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ SI+E A L ++ L L AR+D +F+ + GTI +IN I
Sbjct: 273 QLLSIKEYAFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIP 316
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
G S + S G +++ +I +A + N
Sbjct: 317 GFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
>gi|320546374|ref|ZP_08040690.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812]
gi|320448984|gb|EFW89711.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812]
Length = 348
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 154/342 (45%), Gaps = 48/342 (14%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I ++ + Q +S+ PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGD---FIKTQEFSSKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G+++ ++ V KL + V VKP G
Sbjct: 124 VAMDKISTKHVLESAGVPLVAYVTYVEGADLEKTVAE---VNEKL---TYPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A G +L+ A L+ D R+++E +G +
Sbjct: 178 SSVGISKAEGEA-ALRTAIDFALK-YDSRILIE-----------------TGVNAR---- 214
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P ++ +R
Sbjct: 215 ---EIEVGILGNADVKTTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAHIDSDIMEEMRG 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
A+ F+ +G C +R D +FL HV+ + T G T+W
Sbjct: 271 YATTAFRAIGGCGLSRCD-FFLTEDGHVYLNELNTMPGFTQW 311
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 131/322 (40%), Gaps = 67/322 (20%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK++T H+ +
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAMDKIST----KHVLESAG 139
Query: 693 LTINKDVRRKE--DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
+ + V E DL KT + ++ +LT + VKPA G S G++
Sbjct: 140 VPLVAYVTYVEGADLEKT-VAEVNEKLTYP-----VFVKPANMGSSVGIS---------- 183
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810
KA E LR I F+ K R++
Sbjct: 184 --KAEGEAALRTA-------------------------------IDFAL----KYDSRIL 206
Query: 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870
+ EI VG++G + + +P VK+ + K+ +T + +
Sbjct: 207 IETGVNAREIEVGILGNA-DVKTTLPGEVVKDVA-FYDYDAKYIDN---KITMDIPAHID 261
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
++ +++ + A+ G SR D F+ D G V + E+NT+PG T + ++ L
Sbjct: 262 SDIMEEMRGYATTAFRAIGGCGLSRCDFFLTED-GHVYLNELNTMPGFTQWS--MYPLLW 318
Query: 931 EQPPMYPHQFFRKVLDLGSERF 952
E + K+++L E F
Sbjct: 319 ENMGLAYTDLVEKLVELAKEMF 340
>gi|389843314|ref|YP_006345394.1| D-alanine--D-alanine ligase [Mesotoga prima MesG1.Ag.4.2]
gi|387858060|gb|AFK06151.1| D-alanine--D-alanine ligase [Mesotoga prima MesG1.Ag.4.2]
Length = 305
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 156/380 (41%), Gaps = 83/380 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ ++ GG S+ER +S+ S ++ ++ L A I
Sbjct: 4 RIAVVYGGFSSERDVSVKSGSNISKSLE-------------RLGAEVIG----------- 39
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD K + +A L+ D+ F +HG+FGEDG +Q ++E +P+ + SR
Sbjct: 40 FDLKRDRIAS----------LLSLKADLFFLALHGKFGEDGTVQGLMELAGLPYTSSDSR 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
FDK E++ + L ++E +L W K+ P V+KPTR
Sbjct: 90 TSAVCFDK-----EITYRLVKAEVDLPLWKKVISEKDLEGW----KIFP----CVIKPTR 136
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIGV + + + + +L + D +++E +++ G E T ++D G PV
Sbjct: 137 EGSSIGVFICDDASTLINRTR--LLLDVYDSLLLEEYID-GREITVSIIDSREGIKVLPV 193
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
++++ K ++Y KY P + P + SI E + ++
Sbjct: 194 --------------LEIKPKRRFYDYEAKYTP-GLTEFVVPAPIERSTLESIIEKSVAVY 238
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG DFAR+DG + G F ++N I GM S L A
Sbjct: 239 KLLGCRDFARVDGIL------------------KGGVFYFLEVNTIPGMTDLSDLPMSAR 280
Query: 439 KVGFSHSNILRTIIGHACSR 458
G + +++ II A R
Sbjct: 281 AAGMTFDDVVLDIIEAADKR 300
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 108/281 (38%), Gaps = 69/281 (24%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F+A+HG GEDGT+Q L+E G+PYT S C DK T + D L + K
Sbjct: 59 FLALHGKFGEDGTVQGLMELAGLPYTSSDSRTSAVCFDKEITYRLVKAEVD---LPLWKK 115
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
V ++DL I C +KP R+G S GV C + T+
Sbjct: 116 VISEKDLEGWKI----------FPC---VIKPTREGSSIGV--FICDDASTL-------- 152
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
+R ++++ + L+ E +++
Sbjct: 153 --------INRTRLLLDVYDS----LLLEEYIDGR------------------------- 175
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
EITV +I + ++P + +K E K+ G + P P + L+
Sbjct: 176 EITVSIIDSREGIK-VLPVLEIKPKRRFYDYEAKYTPGLTEFVVPAP---IERSTLESII 231
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
++ + L F+R+D + G +EVNT+PGMT
Sbjct: 232 EKSVAVYKLLGCRDFARVDGILK--GGVFYFLEVNTIPGMT 270
>gi|398813624|ref|ZP_10572317.1| D-alanine--D-alanine ligase [Brevibacillus sp. BC25]
gi|398038192|gb|EJL31360.1| D-alanine--D-alanine ligase [Brevibacillus sp. BC25]
Length = 350
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 166/388 (42%), Gaps = 57/388 (14%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ L V ++ GG S+E +SL S SVL+ + + V I R + + + S
Sbjct: 2 KKLTVAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITRE-GQWLRYTGNIES-I 59
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAA---------NVDIVFPTIHGRFGEDGGIQEVLE 186
D + E F S + + A VD+VFP +HG+ GEDG +Q +LE
Sbjct: 60 RNDSWHQSEKCVPAFLSPCRKVKGIVAEENGTMTVTKVDVVFPILHGKNGEDGTVQGLLE 119
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
+PFVG + + DK D + +++ I P + + ++L+ V + +
Sbjct: 120 LAGIPFVGCHTLSSAICMDK-DIAHTLAESSGIKTPRSV---TVYPNTDLAT--VQSATE 173
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP +AGSSIG+T AY + + + +L DD+VV+E IV
Sbjct: 174 ALGFPLYVKPAKAGSSIGITKAYSLSELFFGIENALLH--DDKVVIE---------ENIV 222
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY-LPTQQVAYHTPPRFPI 364
GF+ VL EV G VD + FNY KY L T + H P R
Sbjct: 223 -----GFEVGCAVLGNREV---IVGEVDEIELLQGFFNYTEKYSLETAHI--HVPARIDA 272
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ + I++ A+ L+Q G FAR+D + P G I+F ++N I
Sbjct: 273 ELAHKIKQTATHLYQVFGCRGFARVDMFVTPD-----------------GDIVFNEVNTI 315
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTII 452
G S G S+ +L T+I
Sbjct: 316 PGFTSKSRYPSMLRATGISYKELLDTLI 343
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 144/379 (37%), Gaps = 96/379 (25%)
Query: 561 YSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 620
Y + L+ T+ + + C+E E T + +E ++ SW +P
Sbjct: 17 YEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIRNDSWHQSEKC---VPA 73
Query: 621 RHSINEWIK--LAKENQA-------TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
S +K +A+EN VF +HG GEDGT+Q LLE G+P+ G ++S
Sbjct: 74 FLSPCRKVKGIVAEENGTMTVTKVDVVFPILHGKNGEDGTVQGLLELAGIPFVGCHTLSS 133
Query: 672 KTCMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----- 725
CMDK +A +LA + ++ + P D+ + +Q T
Sbjct: 134 AICMDKDIAHTLAE-----------SSGIKTPRSVTVYPNTDL-----ATVQSATEALGF 177
Query: 726 -LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784
L VKPA+ G S G+ ++A+ +
Sbjct: 178 PLYVKPAKAGSSIGI----------------------------TKAYSL----------- 198
Query: 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG 844
E+ F ++ + D+++ + N E+ V+G V V E
Sbjct: 199 --------SELFFGIENALLHDDKVVIEENIVGFEVGCAVLGN--------REVIVGEVD 242
Query: 845 DILSLEEKFQGGTGINLTPP----PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 900
+I L+ F +L PA I E K KQ + GF+R+D FV
Sbjct: 243 EIELLQGFFNYTEKYSLETAHIHVPARI-DAELAHKIKQTATHLYQVFGCRGFARVDMFV 301
Query: 901 NVDNGEVLIIEVNTVPGMT 919
D G+++ EVNT+PG T
Sbjct: 302 TPD-GDIVFNEVNTIPGFT 319
>gi|227496614|ref|ZP_03926892.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM
15434]
gi|226833894|gb|EEH66277.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM
15434]
Length = 320
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 152/368 (41%), Gaps = 79/368 (21%)
Query: 78 LRVGLICGGPSAERGISL---NSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LR+ ++ GG S ER +SL N VL H+ G +LV
Sbjct: 12 LRIAILAGGLSHERDVSLRSGNRVAQVLKHL-GHTVLV---------------------- 48
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D D + + + FG D+V+P +HG GEDGG+Q +L ++P+VG
Sbjct: 49 --LDVDARTIASLRAFGP------------DVVWPLVHGGPGEDGGLQNILLALDLPYVG 94
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
T S C++A K A + G T S L + S+L V + G VV
Sbjct: 95 THSDGCQRASFKPTAKAGVRAAGVKTPDSLTL--PKAYFSQLGAQEVLGTVMSRLGLPVV 152
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP + GS +GV+ A D L+ A + D+R ++E ++ G E V+D G G
Sbjct: 153 VKPQQGGSGLGVSPASDA-DQLRNAM-VACFAYDERALIEAYV-AGREIAVSVVDAGEG- 208
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P L P EV + Q +++ +Y P + Y P R ++E
Sbjct: 209 ---PQALPPVEVVTEGQ-----------YDFDARYNPGRS-EYFAPARLSAEETALVQET 253
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A + + LGL + +R D E GT F D+N++ GM +TS L
Sbjct: 254 ALSVHRTLGLGNVSRTDLIL-----------------DEQGTPWFIDVNVVPGMTETSLL 296
Query: 434 FQQASKVG 441
A G
Sbjct: 297 PLAAEAAG 304
>gi|332522758|ref|ZP_08399010.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
porcinus str. Jelinkova 176]
gi|332314022|gb|EGJ27007.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
porcinus str. Jelinkova 176]
Length = 348
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 167/385 (43%), Gaps = 47/385 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ + Y Q ++ PA+ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDRFFVKTYFISQSGDFY---KTQEWNQKPAETE- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNQTIVADAQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G+ + E + L S + VKP G
Sbjct: 124 VAMDKITTKRVLESAGVPQVAYNVFIEGNSLEEC------IQETLTKLSFPMFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L++A + L+ D R+++E ++ ++VG +
Sbjct: 178 SSVGISKADSETE-LREAIQLALQ-YDSRILIEQGVDARE------IEVGLLGNTDIAST 229
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
LP EV V+E A ++Y+ KY+ ++ P + N +R A F+
Sbjct: 230 LPGEV---------VKEV-AFYDYQAKYI-DNKITMAIPAELETDLANKMRIYAENAFKA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LG C +R D +FL T+ G I ++N + G Q S +
Sbjct: 279 LGCCGLSRCD-FFL----------------TKDGFIYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRFPNLASY 465
G S+ ++ ++ A F S+
Sbjct: 322 GLSYPELIERLVILAIEMFEKRESH 346
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 115/287 (40%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L GV
Sbjct: 84 EEGAVVFPILHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTKRVLE---SAGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ +V + + L+ I E +KL + VKPA G S G++
Sbjct: 141 PQVAYNVFIEGNSLEECI----QETLTKLSFP-MFVKPANMGSSVGIS------------ 183
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
KA E LR E ++ S R++ +
Sbjct: 184 KADSETELR-----------------------------EAIQLALQYDS------RILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VKE + K+ I + P + T+
Sbjct: 209 QGVDAREIEVGLLGNT-DIASTLPGEVVKEVA-FYDYQAKYIDNK-ITMAIPAE--LETD 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+K + E AL G SR D F+ D G + + E+NT+PG T
Sbjct: 264 LANKMRIYAENAFKALGCCGLSRCDFFLTKD-GFIYLNELNTMPGFT 309
>gi|432859033|ref|ZP_20085207.1| D-alanine-D-alanine ligase A [Escherichia coli KTE146]
gi|431408088|gb|ELG91280.1| D-alanine-D-alanine ligase A [Escherichia coli KTE146]
Length = 364
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 167/395 (42%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN------VDIVFPTIHGRFGEDGGIQEVLE 186
PA + SLAQ G E+ A N VD++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSATSLAQVPGK-HEYQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+ A DK D + + + + + SF+ + N +S V +KL
Sbjct: 122 VANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIASFITL-TRANRHNISFAEVESKL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 179 --GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C +VL + Y KY+ P
Sbjct: 233 VLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +++++ +I A R
Sbjct: 328 YPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 110/282 (39%), Gaps = 60/282 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIASFIT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R + + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD---- 209
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
L F E D + Q KG
Sbjct: 210 --------------------------LAF----EFDHKVIVEQGI---------KGR--- 227
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V+G S + + + D + + K+ G + P A ++ E DK
Sbjct: 228 -EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEINDKI 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 283 RAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|296101501|ref|YP_003611647.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055960|gb|ADF60698.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 366
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 167/395 (42%), Gaps = 61/395 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SNT 135
RVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y +N
Sbjct: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQ-GQWHVNDASQYLLNAND 63
Query: 136 PADFDFKLESLAQGF------GSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA ++ G L + A A +D+VFP +HG GEDG +Q +L
Sbjct: 64 PAHIALNPSEISVATVPGVVKGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
N+PFVG+ GS AC DK D + + + + V F+ + N + + ++ +L
Sbjct: 124 NLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNVAPFVTL-TRANRDKYNFSQISAQL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ +A + E D +VVVE ++ G E
Sbjct: 179 ---GLPLFVKPANQGSSVGVSKVTSEA-QFTEAVRLAFE-FDHKVVVEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C VVL ++Y KY+ + P
Sbjct: 233 VLGNDFPQASTCGEVVL-----------------NSDFYSYDTKYIDDKGAQVVVPANID 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG C AR+D + P + V + T G FT+I++
Sbjct: 276 PAINDKIRAIAINAYQALGCCGMARVDVFLTPDNEVVINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +S ++ +I A R
Sbjct: 328 YPKLWQAS---------GLGYSELITRLIELALER 353
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 132/319 (41%), Gaps = 70/319 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---L 693
VF VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L V +
Sbjct: 101 VVFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNVAPFV 159
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T+ + R K + + +++++L L VKPA G S GV+++ T V+
Sbjct: 160 TLTRANRDKYN---------FSQISAQLGLP-LFVKPANQGSSVGVSKVTSEAQFTEAVR 209
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
L F E D + Q KG
Sbjct: 210 ------------------------------LAF----EFDHKVVVEQGI---------KG 226
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
EI V+G S V + + D S + K+ G + PA+I A
Sbjct: 227 R----EIECAVLGNDFPQASTCGEVVL--NSDFYSYDTKYIDDKGAQVV-VPANI--DPA 277
Query: 874 LDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
++ + I + A AL G +R+D F+ DN EV+I E+NT+PG T + ++ L +
Sbjct: 278 INDKIRAIAINAYQALGCCGMARVDVFLTPDN-EVVINEINTLPGFT--NISMYPKLWQA 334
Query: 933 PPMYPHQFFRKVLDLGSER 951
+ + ++++L ER
Sbjct: 335 SGLGYSELITRLIELALER 353
>gi|374601846|ref|ZP_09674843.1| D-alanine--D-alanine ligase [Paenibacillus dendritiformis C454]
gi|374392500|gb|EHQ63825.1| D-alanine--D-alanine ligase [Paenibacillus dendritiformis C454]
Length = 312
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 161/402 (40%), Gaps = 93/402 (23%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ +VG+I GG S+ER +SL + + ++
Sbjct: 2 KATKVGVIMGGVSSERQVSLMTGKEMM--------------------------------- 28
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
A+ D K E++ S E + +DI +HG++GEDG +Q LE +P+ G+
Sbjct: 29 -ANLDDKYEAVPIELNSTEELIGKVK-GIDIALLALHGKYGEDGTVQGTLETLGIPYTGS 86
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS--EVNESELSNWFVTNKLDPNSGKVV 253
G + DK + +G T P ++L S E++ +E VV
Sbjct: 87 GVLSSSLCMDKELTKKIIRFEGLAT-PDWMLIASLDELDTAEAGRRL--------GYPVV 137
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP GSSIGV +A G D L++A L D V++E ++ G E T VL+
Sbjct: 138 VKPNTGGSSIGVQIADGP-DRLRQAVADAL-AWDREVLLEQYV-AGDEITCAVLN----- 189
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
LLPT V ++ K F+Y KY A P ++RE
Sbjct: 190 ----GTLLPT---------VSIKAKAHFFDYSSKY--CDGGAEEEVIELPEPCGTAVREA 234
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A ++Q + +ARID +V ++N + G+ + S L
Sbjct: 235 ALRIYQAMKCSVYARIDMMLADGIPYVL------------------EVNTLPGLTKNSLL 276
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGR 475
+ A G S+S +L II H +L + + + LPGR
Sbjct: 277 PKSAKAAGLSYSRLLDEIITH------SLRARKTEEAGLPGR 312
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
+A+HG GEDGT+Q LE G+PYTG GV++S CMDK T
Sbjct: 59 LLALHGKYGEDGTVQGTLETLGIPYTGSGVLSSSLCMDKELT 100
>gi|306833025|ref|ZP_07466157.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338]
gi|304424924|gb|EFM28058.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338]
Length = 348
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 169/386 (43%), Gaps = 49/386 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I ++ + Q +S+ PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGD---FIKTQEFSSKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G+++ ++ V KL + V +KP G
Sbjct: 124 VAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAE---VNEKL---TYPVFIKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E + A ++VG +
Sbjct: 178 SSVGISKADDE-EGLRSAIDLALK-YDSRILIE------TGVNAREIEVGILGNADVQTT 229
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y KY+ ++ P ++ +R A+ F+
Sbjct: 230 LPGEV-----------VKDVAFYDYDAKYI-DNKITMDIPAHIDSNIMEEMRGYATTAFR 277
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G C +R D +FL HV+ ++N + G Q S
Sbjct: 278 AIGGCGLSRCD-FFLTEDGHVY----------------LNELNTMPGFTQWSMYPLLWEN 320
Query: 440 VGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 321 MGLAYSDLIEKLVELAKEMFEKRESH 346
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK++T + L GV
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAMDKISTK---HVLESAGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + L+ + ++ +LT + +KPA G S G+++ A+D
Sbjct: 141 PLVAYVTYVEGADLEKAVAEVNEKLTYP-----VFIKPANMGSSVGISK---ADDEEGLR 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A++ L K R++ +
Sbjct: 193 SAIDLAL--------------------------------------------KYDSRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ + K+ I + P + +
Sbjct: 209 TGVNAREIEVGILGNA-DVQTTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAH--IDSN 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+++ + A+ G SR D F+ D G V + E+NT+PG T + ++ L E
Sbjct: 264 IMEEMRGYATTAFRAIGGCGLSRCDFFLTED-GHVYLNELNTMPGFTQWS--MYPLLWEN 320
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K+++L E F
Sbjct: 321 MGLAYSDLIEKLVELAKEMF 340
>gi|237730347|ref|ZP_04560828.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2]
gi|226905886|gb|EEH91804.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2]
Length = 364
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 171/399 (42%), Gaps = 67/399 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y SN
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GQWHVSDASNYLLNSN 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSETSLAQVPGK----QEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
+L N+PFVG+ GS AC DK D + + + + + F+ + N + +S
Sbjct: 119 MLRVANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFITL-TRANRNSISFAE 173
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGG 299
V ++L + VKP GSS+GV+ V + + + L D +VVVE ++ G
Sbjct: 174 VESRL---GLPLFVKPANQGSSVGVS---KVTSEAQYDQAVALAFEFDHKVVVEQGIK-G 226
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
E VL G D HP E+ L + Y KY+ P
Sbjct: 227 REIECAVL----GND-HPQASTCGEIVLNSD----------FYAYDTKYIDDNGAKVVVP 271
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ + IRE A +Q LG AR+D VF ++E ++
Sbjct: 272 AAIAPEINDKIREIAIQAYQTLGCAGMARVD---------VFLTAEND--------VVIN 314
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+IN + G S + G +++++ +I A R
Sbjct: 315 EINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R + + + E+ S+L L VKPA G S GV+++
Sbjct: 161 LTRANRNSIS------FAEVESRLGLP-LFVKPANQGSSVGVSKV 198
>gi|269958139|ref|YP_003327928.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
gi|269306820|gb|ACZ32370.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
Length = 349
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 154/391 (39%), Gaps = 85/391 (21%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
G LRV ++ GG S ER +SL S R V + ++ + V + +D L Y
Sbjct: 34 GSALRVVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRY---------- 83
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
EH D+V+P +HG GEDG +++VLE VP+VG
Sbjct: 84 ---------------------LDEH---RPDVVWPLLHGAGGEDGSLRDVLELAGVPYVG 119
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
TG RA R A+DK A + G T P +L E+ + ++ + VVV
Sbjct: 120 TGPRASRLAWDKPIAKERLQTAGLAT-PEWLTLPQELFRDLGAQGVLSIVAERFGLPVVV 178
Query: 255 KPTRAGSSIGVT-------VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
KPTR GS++GVT +A ++D ++E D G E V+
Sbjct: 179 KPTRGGSALGVTRVTSKDGLARAMVDCFAYGDSALIERAVD----------GVEIAVSVI 228
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
D G D PV L E+ + D +++ +Y P +V Y P R
Sbjct: 229 D---GMDG-PVALPAVEIIV-----------DGPYDFDARYNPG-RVEYFAPARLSPDQA 272
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ A Q L L +R D L + GT ++N+ GM
Sbjct: 273 AHVAGVAVAAHQALDLRHLSRTD-LILQTD----------------GTAQVLEVNVAPGM 315
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+TS L Q A G + R ++ HA R
Sbjct: 316 TETSLLPQAAVAAGHDLGTLYRQVVEHAALR 346
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 112/296 (37%), Gaps = 63/296 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK--VATSLALNHLADLGVLTI 695
V+ +HG GEDG+L+ +LE GVPY G G AS+ DK L LA LT+
Sbjct: 92 VWPLLHGAGGEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTL 151
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+++ R DL ++ I E + VKP R G + GV R+ + L +A+
Sbjct: 152 PQELFR--DLGAQGVLSIVAERFG----LPVVVKPTRGGSALGVTRVTSKDGLA---RAM 202
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
+C F D L
Sbjct: 203 VDC------------------------------FAYGDSALIERAVDG------------ 220
Query: 816 RWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
VEI V VI G G + +P+V + G + ++ G P + +S +
Sbjct: 221 --VEIAVSVIDGMDGPVA--LPAVEIIVDGP-YDFDARYNPGRVEYFAP---ARLSPDQA 272
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
AL L SR D + D G ++EVN PGMT +++L A++
Sbjct: 273 AHVAGVAVAAHQALDLRHLSRTDLILQTD-GTAQVLEVNVAPGMTETSLLPQAAVA 327
>gi|291544035|emb|CBL17144.1| D-alanine--D-alanine ligase [Ruminococcus champanellensis 18P13]
Length = 357
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 165/387 (42%), Gaps = 50/387 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNL-------NAYAISSAQ 130
+RV ++ GG S+E +SL SA +V+++I D V C I + + AI+S +
Sbjct: 4 IRVAVVFGGVSSEHDVSLVSATNVIENIPQDKYEVMCIGITKKGRWLYYPGDTAAIASGE 63
Query: 131 VYSNTPADFDFKL--ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
+ P L + L GF L E E VD+VFP +HG+ GEDG IQ +++
Sbjct: 64 -WERDPDCISAVLSPDPLHGGF-LLIENGEATVRKVDVVFPVLHGKNGEDGTIQGLMDLA 121
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
+P+VG G A DK + T ++ ++N + + +L
Sbjct: 122 RIPYVGCGLLASASCMDKVHTHTVLDYNKIRTARWRMIGQRDLNRLDACCAQIGEEL--- 178
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ VKP GSSIG+ A ++LK A I D++VV+E F++G A+
Sbjct: 179 GYPLFVKPANCGSSIGINKATDA-ETLKDAVKIAFSH-DNKVVIEEFIQGKELEVAVF-- 234
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G+D +P E+E + ++Y KY+ Y P R
Sbjct: 235 ---GYD-NPFASFVGEIE----------PCNDFYDYEAKYILGTSKLY-IPARIDADSEK 279
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
IRE A ++ LG +R+D +FL GT++ +IN + G
Sbjct: 280 EIRETAVAAYKALGCKGLSRVD-FFLKQD----------------GTVILNEINTMPGFT 322
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHA 455
S + +G S+S ++ ++ A
Sbjct: 323 PISMYPKLMENLGMSYSYLIDKLLEQA 349
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 127/316 (40%), Gaps = 65/316 (20%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q L++ +PY G G++AS +CMDKV T L++ + T
Sbjct: 99 VVFPVLHGKNGEDGTIQGLMDLARIPYVGCGLLASASCMDKVHTHTVLDYNK---IRTAR 155
Query: 697 KDVRRKEDL--LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + DL L I EL L VKPA G S G+ + AE L VK
Sbjct: 156 WRMIGQRDLNRLDACCAQIGEELGY-----PLFVKPANCGSSIGINKATDAETLKDAVKI 210
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+FS + ++ E F++
Sbjct: 211 -----------AFSHDNK-----------VVIEEFIQGK--------------------- 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
E+ V V G S + ++ D E K+ GT P + + ++
Sbjct: 228 ----ELEVAVFGYDNPFASFVGE--IEPCNDFYDYEAKYILGTSKLYIP---ARIDADSE 278
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
+ ++ AL +G SR+D F+ D G V++ E+NT+PG TP + ++ L E
Sbjct: 279 KEIRETAVAAYKALGCKGLSRVDFFLKQD-GTVILNEINTMPGFTP--ISMYPKLMENLG 335
Query: 935 MYPHQFFRKVLDLGSE 950
M K+L+ E
Sbjct: 336 MSYSYLIDKLLEQAIE 351
>gi|410594327|ref|YP_006951054.1| D-alanine--D-alanine ligase [Streptococcus agalactiae SA20-06]
gi|410517966|gb|AFV72110.1| D-alanine--D-alanine ligase [Streptococcus agalactiae SA20-06]
Length = 348
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 173/396 (43%), Gaps = 69/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + S ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D D + S+ + A IVFP +HG GEDG IQ LE +P+V
Sbjct: 68 NQTVDLDKMVRP--------SDIYDDNA----IVFPVLHGPMGEDGSIQGFLEVLRMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ----GSEVNESELSNWFVTNKLDPNS 249
GT + A DK ++ G VP Q G ++ + + L+ S
Sbjct: 116 GTNILSSSVAMDKITTKQVLATVG---VPQVAYQTYFEGDDLEHA------IKLSLETLS 166
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ VKP GSS+G++ A SL+ A L+ D R+++E +G TA ++V
Sbjct: 167 FPIFVKPANMGSSVGISKATDE-SSLRSAIDFALK-YDSRILIE---QG---VTAREIEV 218
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +L +V+ F G V V++ D ++Y KY+ ++ P + + +
Sbjct: 219 G--------ILGNNDVKTTFPGEV-VKDVD-FYDYDAKYI-DNKITMDIPAKVDEATMEA 267
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ AS F+ +G C +R D +FL T+ G I ++N + G Q
Sbjct: 268 MRQYASKAFKAIGTCGLSRCD-FFL----------------TKDGQIFLNELNTMPGFTQ 310
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G ++S+++ ++ A F S+
Sbjct: 311 WSMYPLLWENMGLTYSDLIEKLVMLAKEMFEKRESH 346
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 127/324 (39%), Gaps = 78/324 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
++ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA +GV
Sbjct: 84 DDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKQV---LATVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDL 748
+ + D D+ H + KL +TL VKPA G S G++
Sbjct: 141 PQVAYQTYFEGD-------DLEHAI--KLSLETLSFPIFVKPANMGSSVGIS-------- 183
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
KA +E LR I F+ K R
Sbjct: 184 ----KATDESSLR-------------------------------SAIDFAL----KYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G + + P VK+ D + K+ P
Sbjct: 205 ILIEQGVTAREIEVGILGN-NDVKTTFPGEVVKDV-DFYDYDAKYIDNKITMDIPAKVDE 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV----- 923
+ EA+ +Q A+ G SR D F+ D G++ + E+NT+PG T ++
Sbjct: 263 ATMEAM---RQYASKAFKAIGTCGLSRCDFFLTKD-GQIFLNELNTMPGFTQWSMYPLLW 318
Query: 924 ----LIHQALSEQPPMYPHQFFRK 943
L + L E+ M + F K
Sbjct: 319 ENMGLTYSDLIEKLVMLAKEMFEK 342
>gi|42522180|ref|NP_967560.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100]
gi|81618354|sp|Q6MQ94.1|DDL_BDEBA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|39574711|emb|CAE78553.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100]
Length = 365
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 156/398 (39%), Gaps = 69/398 (17%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V LI GG SAE +SL SA++V D + D I + + Y V++
Sbjct: 7 VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEATKIV 66
Query: 140 DFKLESLA--------QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
D L S A QG L +H VD+ FP +HG GEDG IQ + + +P
Sbjct: 67 DSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKMVQLP 126
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQ--GFITVPS--FLL----QGSEVNE--SELSNWFV 241
FVG G + DK E+ K+ +P+ +LL Q ++ NE EL + F
Sbjct: 127 FVGCGVWSSAAGMDK-----EIMKRLLAVAKIPNARYLLLTPHQKNDYNEIVKELGSPF- 180
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
+KP AGSS+GV D + K K D +V+ E F++G
Sbjct: 181 -----------FIKPANAGSSVGVHKIKTAEDFVVKLKDAF--QFDTKVLAEEFIQGREV 227
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
+++ G + P LP EV Q + ++Y KY+ P
Sbjct: 228 ECSVM-----GHNHAPKASLPGEVIPQHE----------FYSYEAKYIDDNGALLKIPAE 272
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
++++ A +Q +G R+D + P+ G + +I
Sbjct: 273 LSPETTKAVQKMAEQTYQAMGCDGLTRVDFFIRPN-----------------GELYINEI 315
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
N I G + S + G S+ +++ +I +F
Sbjct: 316 NTIPGFTKISMYPKMWEASGLSYKDLISQLIQLGFEKF 353
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 182/461 (39%), Gaps = 116/461 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S NV A + + TP L+ S + S
Sbjct: 7 VALIFGGKSAEHEVSLRSAKNV---ADALDKDKFTPVLIGISKEGS-------------- 49
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P V T+ V +A EP A S L+ + V + LK HS T D
Sbjct: 50 --WYRFPDMGVFTEATKIVDSALPSKAEP--VALMS-LQGKPV---LYSLKDHSK-TAVD 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+A F +HG +GEDGT+Q L + +P+ G GV +S
Sbjct: 101 VA-----------------------FPILHGTMGEDGTIQGLFKMVQLPFVGCGVWSSAA 137
Query: 674 CMDK--VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
MDK + LA+ + + L + +K D ++E+ +L +KPA
Sbjct: 138 GMDKEIMKRLLAVAKIPNARYLLLTP--HQKND---------YNEIVKELGS-PFFIKPA 185
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV ++ AED V +K ++F F+ V
Sbjct: 186 NAGSSVGVHKIKTAEDFVVKLK-----------DAFQ-----------------FDTKVL 217
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
+E + + E+ V+G + + +P + + + S E
Sbjct: 218 AEEFI-------------------QGREVECSVMGHNHAPKASLPGEVIPQH-EFYSYEA 257
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ G L P + +S E ++ E A+ +G +R+D F+ NGE+ I E
Sbjct: 258 KYIDDNGALLKIP--AELSPETTKAVQKMAEQTYQAMGCDGLTRVDFFIR-PNGELYINE 314
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+NT+PG T + ++ + E + +++ LG E+F
Sbjct: 315 INTIPGFT--KISMYPKMWEASGLSYKDLISQLIQLGFEKF 353
>gi|365969197|ref|YP_004950758.1| D-alanine--D-alanine ligase [Enterobacter cloacae EcWSU1]
gi|365748110|gb|AEW72337.1| D-alanine--D-alanine ligase A [Enterobacter cloacae EcWSU1]
Length = 380
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/411 (27%), Positives = 174/411 (42%), Gaps = 68/411 (16%)
Query: 63 LEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLN 122
LE+ MAK+ RVG++ GG SAE +SL SA++++D I V ID+
Sbjct: 10 LEESEMAKQ-------RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQ 62
Query: 123 AYAISSAQVYSNT--PADFDFKLESLA--------QGFGSLSEFAEHLAANVDIVFPTIH 172
+ ++Q N PA +++ QG + A+ LA +D+VFP +H
Sbjct: 63 WHVNDASQYLLNADDPAHIALNPSAISVATVPGVVQGQLIDAGNAQSLA-QIDVVFPIVH 121
Query: 173 GRFGEDGGIQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229
G GEDG +Q +L N+PFVG+ GS AC DK D + + + + + F+ +
Sbjct: 122 GTLGEDGSLQGMLRMANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-T 176
Query: 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR 289
N + S ++ +L + VKP GSS+GV+ +A + E D +
Sbjct: 177 RANRDQHSFAQISGQL---GLPLFVKPANQGSSVGVSKVTSEA-QFTQAVSLAFE-FDHK 231
Query: 290 VVVELFLEGGSEFTAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRK 347
VVVE ++ G E VL D C VVL ++Y K
Sbjct: 232 VVVEQGIK-GREIECAVLGNDFPQASTCGEVVL-----------------NSDFYSYDTK 273
Query: 348 YLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETK 407
Y+ + P + + IR A +Q LG AR+D + P + V + T
Sbjct: 274 YIDDKGAQVVVPANIDPAINDKIRAIAINAYQTLGCSGMARVDVFLTPENEVVINEINTL 333
Query: 408 YGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G FT+I++ + Q S G S+S ++ +I A R
Sbjct: 334 PG--------FTNISMYPKLWQAS---------GLSYSALITRLIELALER 367
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 115 VVFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFV 173
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
R D + +++ +L L VKPA G S GV+++ T
Sbjct: 174 TLTRANRDQHS------FAQISGQLGLP-LFVKPANQGSSVGVSKVTSEAQFT 219
>gi|262283026|ref|ZP_06060793.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA]
gi|262261278|gb|EEY79977.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA]
Length = 348
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 165/394 (41%), Gaps = 77/394 (19%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + A ++ ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGYFIKTQEFEAKPVADEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D K++ S+ E A +VFP +HG GEDG IQ LE +P+V
Sbjct: 68 NATVDMSRKIKP--------SDIYEAGA----VVFPVLHGPMGEDGSIQGFLEVLKMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G + A DK + G VP + E E ++ + KL S V
Sbjct: 116 GCNILSSSLAMDKITTKRVLESAGIAQVPYVAVVDGEDLEQKIQE--IEEKL---SYPVF 170
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
KP+ GSS+G++ + D++ + + LE ++ + VL V G
Sbjct: 171 TKPSNMGSSVGISKS------------------DNQEELRVSLELAFKYDSRVL-VEQGV 211
Query: 314 DCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIV 365
E+E+ G+ DV+ KD A ++Y+ KY+ ++ P + P
Sbjct: 212 TAR-------EIEVGLLGNADVKSSLPGEVVKDVAFYDYQAKYI-DNKITMAIPAQLPEG 263
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V+N++R+ A F+ +G +R D ++ TE G + ++N +
Sbjct: 264 VVNTMRQNAETAFRAIGGLGLSRCDFFY-----------------TEDGQVFLNELNTMP 306
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G Q S +G ++ +++ ++ A F
Sbjct: 307 GFTQWSMYPLLWENMGLAYPDLIEKLVRLAEEAF 340
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 125/323 (38%), Gaps = 72/323 (22%)
Query: 605 KHSWFTGFDIADELPMRHSINEWIKLAK-----ENQATVFIAVHGGIGEDGTLQSLLEAE 659
K F +ADE M ++ + + K E A VF +HG +GEDG++Q LE
Sbjct: 51 KTQEFEAKPVADEKLMTNATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVL 110
Query: 660 GVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTS 719
+PY G +++S MDK+ T L V + V EDL + E+
Sbjct: 111 KMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVA--VVDGEDLEQK-----IQEIEE 163
Query: 720 KLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNP 779
KL KP+ G S G+++ E+L V +
Sbjct: 164 KLSYPVFT-KPSNMGSSVGISKSDNQEELRVSL--------------------------- 195
Query: 780 PPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVT 839
E+ F S R++ + EI VG++G + S +P
Sbjct: 196 --------------ELAFKYDS------RVLVEQGVTAREIEVGLLGNA-DVKSSLPGEV 234
Query: 840 VKESGDILSLEEKFQGGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRI 896
VK+ + K+ I + P P +++T +Q E A+ G SR
Sbjct: 235 VKDVA-FYDYQAKYIDNK-ITMAIPAQLPEGVVNT-----MRQNAETAFRAIGGLGLSRC 287
Query: 897 DAFVNVDNGEVLIIEVNTVPGMT 919
D F ++G+V + E+NT+PG T
Sbjct: 288 D-FFYTEDGQVFLNELNTMPGFT 309
>gi|423138866|ref|ZP_17126504.1| D-ala D-ala ligase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379051420|gb|EHY69311.1| D-ala D-ala ligase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 364
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKT-GQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGKY----EHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S + +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRANRHAFSFTEIES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDSPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QLPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAPF 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 159 ITLTRANRHAFS---------FTEIESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|297571651|ref|YP_003697425.1| D-alanine--D-alanine ligase [Arcanobacterium haemolyticum DSM
20595]
gi|296931998|gb|ADH92806.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595]
Length = 372
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 154/395 (38%), Gaps = 47/395 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RV +I GG S E IS+ +A +V+ + + V I R+ A+ + T
Sbjct: 6 IRVAVIYGGASGEHSISIATAGAVMRSLDPERYDVLPIGITRD-GAWVPGATDASQLTLE 64
Query: 138 DFDFKLE------SLAQGFGSLS------EFAEHLA--ANVDIVFPTIHGRFGEDGGIQE 183
++E +L G G+ S E A LA NVD+VFP +HG FGEDG IQ
Sbjct: 65 AGLLEVEAAPEAVTLPAGDGTQSLVRYDRENASDLALLGNVDVVFPLLHGPFGEDGTIQG 124
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+LE VP+VG G A DK+ + + G P + + +
Sbjct: 125 MLEMAGVPYVGCGVFASAAGMDKHYMKVVLEAAGLPVAPYVVATARKWRDERDQVLADVA 184
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
K+ S V VKP RAGSS+G+T + D + D +V++E + G E
Sbjct: 185 KM---SFPVYVKPARAGSSLGITRVARIEDVPAAVAAAQIH--DPKVLIEQGVN-GREIE 238
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D P + EV + +D +++ KYL T + P P
Sbjct: 239 CAVL--GGRGDTTPRASVVGEVLVNLP-------EDGFYDFEHKYLDTDGLTMSIPANVP 289
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ IR A F G +R+D + P G ++N
Sbjct: 290 EEISEKIRAQAIATFDAFGCEGMSRVDFFLTPE-----------------GETFVIELNT 332
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I G S G +S +L +I A R
Sbjct: 333 IPGFTPFSMYPVLWENTGLPYSQLLDELIALALER 367
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 138/347 (39%), Gaps = 71/347 (20%)
Query: 618 LPMRHSINEWIKLAKENQA---------TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGV 668
LP ++ +EN + VF +HG GEDGT+Q +LE GVPY G GV
Sbjct: 79 LPAGDGTQSLVRYDRENASDLALLGNVDVVFPLLHGPFGEDGTIQGMLEMAGVPYVGCGV 138
Query: 669 MASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728
AS MDK + L + R+ D + D+ +K+ + V
Sbjct: 139 FASAAGMDKHYMKVVLEAAGLPVAPYVVATARKWRDERDQVLADV-----AKMSFP-VYV 192
Query: 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788
KPAR G S G+ R+ ED+ V A ++ H P++LI
Sbjct: 193 KPARAGSSLGITRVARIEDVPAAVAA-------------AQIHD--------PKVLI--- 228
Query: 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM---HSLMPSVTVKESGD 845
Q N EI V+G G S++ V V D
Sbjct: 229 ----------EQGVNGR-------------EIECAVLGGRGDTTPRASVVGEVLVNLPED 265
Query: 846 -ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN 904
E K+ G+ ++ P + + E +K + + +A EG SR+D F+ +
Sbjct: 266 GFYDFEHKYLDTDGLTMSIP--ANVPEEISEKIRAQAIATFDAFGCEGMSRVDFFLTPE- 322
Query: 905 GEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
GE +IE+NT+PG TP + ++ L E + Q +++ L ER
Sbjct: 323 GETFVIELNTIPGFTPFS--MYPVLWENTGLPYSQLLDELIALALER 367
>gi|405979311|ref|ZP_11037655.1| D-alanine-D-alanine ligase [Actinomyces turicensis ACS-279-V-Col4]
gi|404392692|gb|EJZ87750.1| D-alanine-D-alanine ligase [Actinomyces turicensis ACS-279-V-Col4]
Length = 336
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 160/376 (42%), Gaps = 94/376 (25%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L+V +I GG + ER +S+ S R V + I + Y+ A
Sbjct: 3 LKVLIIAGGLTHERDVSVRSGRRVAN----------------------ILTQAGYTVHVA 40
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D +L S+ + EFA D+++P +HG GEDG +Q +LE +PFVG+ S
Sbjct: 41 DVDHQLTSV------IDEFAP------DVIWPVVHGSIGEDGSLQTLLEAIGIPFVGSSS 88
Query: 198 RACRQAFDKYDA-----SLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
A +K A S + G++++P L + ++ S++ + + P V
Sbjct: 89 VQAMLASNKPTAKSLLGSAGLVTPGWVSLPQILFR--QIGASQVLDAIESQTQFP----V 142
Query: 253 VVKPTRAGSSIGVTVAY-------GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
++KPT GS++G++ + ++D+ + I++E EL G +
Sbjct: 143 IIKPTDGGSALGLSAVHDPGELRSAMVDAFAYGEHIMVE--------ELI--KGRDIAVS 192
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
V+D+ +G PV L P E+ S D ++Y +Y T + Y P RF
Sbjct: 193 VVDLENG----PVALPPVEI------STD----GGRYDYAARYT-TDETEYFVPARFTEE 237
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
++ +R+ A LGL D +RID + + GT F D N+
Sbjct: 238 QLDVLRQAAVEAHTILGLRDLSRID-----------------FVVDDEGTCWFIDANVTP 280
Query: 426 GMEQTSFLFQQASKVG 441
GM TS L Q A G
Sbjct: 281 GMTDTSLLPQAADADG 296
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTG 665
++ VHG IGEDG+LQ+LLEA G+P+ G
Sbjct: 58 IWPVVHGSIGEDGSLQTLLEAIGIPFVG 85
>gi|320335437|ref|YP_004172148.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211]
gi|319756726|gb|ADV68483.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211]
Length = 343
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 158/381 (41%), Gaps = 51/381 (13%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
G +R+ L+ GG S E +SL+SAR VL + D V I +
Sbjct: 4 GAKVRILLLAGGQSGEHEVSLSSARGVLAALPKDRFEVTPLVISKEGRWL---------- 53
Query: 135 TPADFDFKLES-LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
PAD LE+ +A+ G L AA+ D+VFP +HG GEDG +Q +L +PFV
Sbjct: 54 PPADTTRALEAGVAETGGDLMLRGVADAASFDVVFPLLHGPNGEDGTVQGLLTLAGIPFV 113
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G+G + DK ++ G VP LL ++V + +L +
Sbjct: 114 GSGVLGSAASMDKAMTKQVLAAHGIPQVPWRLLTRAQVRRDPAAALTAAREL---GFPLF 170
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP GSS+G++ G D L G + E D RVV+E +G L+VG
Sbjct: 171 VKPANMGSSVGISKVRGE-DEL---DGALREAFAHDRRVVLEAMTQGKPR----ELEVGI 222
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
+ P+ P EL+F ++Y KY + H P P V +R
Sbjct: 223 LGNDAPMA-SPVG-ELRFDAD--------FYDYETKYT-EGRATMHIPADVPHAVAEQVR 271
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A F+ L ARID +F ++T G + ++N + G TS
Sbjct: 272 TYALAAFRALDCAGLARID-FFYEAAT---------------GQVYLNEVNTMPGFTPTS 315
Query: 432 FLFQQASKVGFSHSNILRTII 452
+ G S+++++ ++
Sbjct: 316 MYPNLWAAAGLSYADLVTRLV 336
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 115/287 (40%), Gaps = 58/287 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LL G+P+ G GV+ S MDK T LA G+ +
Sbjct: 87 VFPLLHGPNGEDGTVQGLLTLAGIPFVGSGVLGSAASMDKAMTK---QVLAAHGIPQVPW 143
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ + + + P LT+ + L VKPA G S G++++ ++L
Sbjct: 144 RLLTRAQVRRDPAA----ALTAARELGFPLFVKPANMGSSVGISKVRGEDEL-------- 191
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ LR E F ++ + M +G R
Sbjct: 192 DGALR-------------------------EAFAHDRRVVLEA----------MTQGKPR 216
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
E+ VG++G M S P ++ D E K+ G P + + ++
Sbjct: 217 --ELEVGILGNDAPMAS--PVGELRFDADFYDYETKYTEGRATMHIP---ADVPHAVAEQ 269
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
+ AL G +RID F G+V + EVNT+PG TP+++
Sbjct: 270 VRTYALAAFRALDCAGLARIDFFYEAATGQVYLNEVNTMPGFTPTSM 316
>gi|239622538|ref|ZP_04665569.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|239514535|gb|EEQ54402.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
CCUG 52486]
Length = 395
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 130/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 157 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 213
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 214 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGHE 264
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 265 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 324
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 325 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 367
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 368 ISMYPKAWDATGVSYTELITRLI 390
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 189 DARNFT------AADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232
>gi|171778654|ref|ZP_02919750.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704895|ref|YP_005203354.1| D-alanine--D-alanine ligase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282611|gb|EDT48035.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
gi|374681594|gb|AEZ61883.1| D-alanyl-D-alanine ligase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 348
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 167/393 (42%), Gaps = 63/393 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I ++ + Q + + PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGD---FIKTQEFFSKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG +Q LE +P+VGT +
Sbjct: 64 KLMTNDTVVESQKIKPSDIYEPGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP ++GS+++ + V D + V VKP G
Sbjct: 124 VAMDKISTKHVLESAGVPLVPYVTYVEGSDLDAA------VAEVNDKLTYPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A +L+ A L+ D R+++E +G +
Sbjct: 178 SSVGISKAEDEA-ALRSAIDFALK-YDSRILIE-----------------TGVNAR---- 214
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P ++ +R
Sbjct: 215 ---EIEVGILGNADVKTTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAHIDSDIMEEMRG 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ +G C +R D +FL HV+ ++N + G Q S
Sbjct: 271 YATTAFRAIGGCGLSRCD-FFLTEDGHVY----------------LNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 314 YPLLWENMGLAYSDLIEKLVELAKEMFEKRESH 346
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK++T + L GV
Sbjct: 84 EPGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNILSSSVAMDKISTK---HVLESAGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + L + ++ +LT + VKPA G S G+++ AED
Sbjct: 141 PLVPYVTYVEGSDLDAAVAEVNDKLTYP-----VFVKPANMGSSVGISK---AEDEAALR 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A++ L K R++ +
Sbjct: 193 SAIDFAL--------------------------------------------KYDSRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VK+ + K+ I + P + + ++
Sbjct: 209 TGVNAREIEVGILGNA-DVKTTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIP--AHIDSD 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+++ + A+ G SR D F+ D G V + E+NT+PG T + ++ L E
Sbjct: 264 IMEEMRGYATTAFRAIGGCGLSRCDFFLTED-GHVYLNELNTMPGFTQWS--MYPLLWEN 320
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K+++L E F
Sbjct: 321 MGLAYSDLIEKLVELAKEMF 340
>gi|378551429|ref|ZP_09826645.1| hypothetical protein CCH26_15126 [Citricoccus sp. CH26A]
Length = 391
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 162/386 (41%), Gaps = 46/386 (11%)
Query: 65 DQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCY 115
D+ R GR LRV ++ GG S+E IS +A VL+ + + V R
Sbjct: 14 DKHCPGSGRDGR-LRVLVLFGGRSSEHPISCITAAGVLNAMDPEKYEVVPVGITTQGRWS 72
Query: 116 YIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLA-ANVDIVFPTIHGR 174
+ + + ++ A++ S D L + G L+ + + +D+VFP +HG
Sbjct: 73 AVAADTALWNLTGAELPSVPEPDQPLVLGATPDGGHELTSAVDAESHGPIDVVFPLLHGP 132
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234
FGEDG +Q +LE NVP+VG G A DK+ + G P + +
Sbjct: 133 FGEDGTLQGMLEMANVPYVGPGVLASAVGMDKHFMKIAFQAAGLAVGPWETITDRQ---- 188
Query: 235 ELSNWFVT-----NKLDPNSGKVVVKPTRAGSSIGVTVAYGVID--SLKKAKGIILEGID 287
W ++ + + VKP RAGSS+G++ V D L A G+ E +D
Sbjct: 189 ----WLTAPEEALDRAEALGYPLFVKPARAGSSMGISR---VTDREGLHTAVGVARE-LD 240
Query: 288 DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRK 347
+VVVE + G E VLD G G D P LP E+ + ++ ++++ K
Sbjct: 241 PKVVVEAGI-AGREIECAVLD-GHGTD-RPRASLPGEIVVHAGA-----QQHEFYDFQAK 292
Query: 348 YLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETK 407
Y P P I ++E A F+ + +R+D ++ P V + T
Sbjct: 293 YQDDSAADLSCPADLPEAAIAEVQELAVRAFEAVDAEGLSRVDFFYTPDGRFVINEINTM 352
Query: 408 YGSTEWGTILFTDINLISGMEQTSFL 433
G FT I++ M + S L
Sbjct: 353 PG--------FTPISMYPAMWERSGL 370
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----------L 687
VF +HG GEDGTLQ +LE VPY GPGV+AS MDK +A +
Sbjct: 125 VFPLLHGPFGEDGTLQGMLEMANVPYVGPGVLASAVGMDKHFMKIAFQAAGLAVGPWETI 184
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D LT ++ + + L P L VKPAR G S G++R+ E
Sbjct: 185 TDRQWLTAPEEALDRAEALGYP----------------LFVKPARAGSSMGISRVTDREG 228
Query: 748 LTVYVKALEE 757
L V E
Sbjct: 229 LHTAVGVARE 238
>gi|116628785|ref|YP_813957.1| D-alanyl-alanine synthetase A [Lactobacillus gasseri ATCC 33323]
gi|420148290|ref|ZP_14655559.1| D-alanine--D-alanine ligase [Lactobacillus gasseri CECT 5714]
gi|116094367|gb|ABJ59519.1| D-alanine--D-alanine ligase [Lactobacillus gasseri ATCC 33323]
gi|398400090|gb|EJN53679.1| D-alanine--D-alanine ligase [Lactobacillus gasseri CECT 5714]
Length = 375
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 52/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSNTP 136
++VGLI GG S+E +S+ SA ++ + I + V +I + A S +V N
Sbjct: 19 IKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNP- 77
Query: 137 ADFDFKLE-SLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
K+E + ++S E +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 78 -----KMEVANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVG 132
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGK 251
A DK + + G ++ E N+ ++L +V ++L
Sbjct: 133 DDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQL---GSD 189
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
+ VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 190 LFVKPSNQGSSVGVS----HVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL--- 242
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ + KD+ + Y KY P + P ++
Sbjct: 243 --GND-KPIVAGVGQI---------INAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEK 290
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A +FQ ARID TE ++ T++N + G
Sbjct: 291 VRKNALKVFQATECSGLARIDSML----------------RTEDKEVVLTEVNALPGFTN 334
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + +VG +++++ +I +A R+
Sbjct: 335 ISMYPKLFEEVGIPYTDLITKLIDYAMERY 364
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 102/461 (22%), Positives = 171/461 (37%), Gaps = 117/461 (25%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+V +IFGG++SE +VS+MS N++ + N +V P + + G AN D+
Sbjct: 20 KVGLIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWI-----TNDGYLAN----DAD 69
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR V P +E P + A S++
Sbjct: 70 SRKVLDNP---------------KMEVANPHKVANISNIV-------------------- 94
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
EL R I+ F VHG +GEDG LQ L P+ G V+A+
Sbjct: 95 ----ELKDRPEID-----------VFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAA 139
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPA 731
MDK T + LA + + K + K P + + +E + L VKP+
Sbjct: 140 VTMDKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPS 195
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV+ + ++ V AL E F
Sbjct: 196 NQGSSVGVSHVTNEKEYKV---ALAEA------------------------------FKY 222
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
D++L + + GN + + VG I + K+S + E
Sbjct: 223 DDKVLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYEN 267
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ + L P + ++K ++ + A + G +RID+ + ++ EV++ E
Sbjct: 268 KYDDNSTSTLEIPAK--LPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEDKEVVLTE 325
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
VN +PG T + ++ L E+ + K++D ER+
Sbjct: 326 VNALPGFT--NISMYPKLFEEVGIPYTDLITKLIDYAMERY 364
>gi|386853607|ref|YP_006202892.1| D-alanyl-alanine synthetase A [Borrelia garinii BgVir]
gi|365193641|gb|AEW68539.1| DdlA [Borrelia garinii BgVir]
Length = 361
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 166/393 (42%), Gaps = 60/393 (15%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + S+ P D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSV--SDPPKLID 64
Query: 141 FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
+ + F + F+ + +D+VFP +HGR GEDG IQ VL+ ++P +G G
Sbjct: 65 IDVLPIVSLFPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVIDIPCIGAGIIGS 124
Query: 201 RQAFDKYDASLEMSKQGFITVP-------SFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
+ +KY L + VP +LL E+ N + V+
Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQYDYLLDKEEIKR---------NVREALGYPVI 175
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP GSSIG+ VAY S + + I E + D +++E F+E +I+ +
Sbjct: 176 VKPAVLGSSIGINVAY----SENQIEFFIEEALKYDLTILIEKFIEAREIECSIIGNEKI 231
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVIN 368
+ P EV +Q D IF +Y KY +P + ++ P + +
Sbjct: 232 K------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLL 275
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
SI+E A L+++ L L AR+D +F+ + G I +IN I G
Sbjct: 276 SIKEYAFLVYKNLELRGMARVD-FFVEKKS---------------GKIYLNEINTIPGFT 319
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
S + S G +++ +I +A + N
Sbjct: 320 DVSMFAKMCSHDGLQFKDLVDNLINYAFQSYIN 352
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 106/283 (37%), Gaps = 53/283 (18%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG GEDG +Q +L+ +P G G++ S +K L L V I
Sbjct: 90 VVFPVVHGRTGEDGAIQGVLKVIDIPCIGAGIIGSAISSNKYFCKLLLKSFNIPLVPFIG 149
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R+ + LL +I + L + VKPA G S G+ + +++
Sbjct: 150 --FRQYDYLLDKE--EIKRNVREALGYPVI-VKPAVLGSSIGINVAYSENQIEFFIEEAL 204
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ L I + E F+E EI S K ++ G
Sbjct: 205 KYDLTI----------------------LIEKFIEAREIECSIIGNEK--IKIFSPGE-- 238
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
V + + + +S++P G I P + T L
Sbjct: 239 -VVVQDFIFYDYDAKYSVIP-------------------GNSIIFNIPAQ--LETNQLLS 276
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K+ L+ L+L G +R+D FV +G++ + E+NT+PG T
Sbjct: 277 IKEYAFLVYKNLELRGMARVDFFVEKKSGKIYLNEINTIPGFT 319
>gi|365853770|ref|ZP_09394035.1| D-ala D-ala ligase protein [Lactobacillus parafarraginis F0439]
gi|363711928|gb|EHL95634.1| D-ala D-ala ligase protein [Lactobacillus parafarraginis F0439]
Length = 376
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 166/392 (42%), Gaps = 64/392 (16%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI---SSAQVY 132
+ + VGLI GG S+E +S SA ++ D + D V + + ++ Y + +S +V+
Sbjct: 5 KKVHVGLIFGGNSSEHDVSKRSAHNIFDAMDKDKYDVSLFLVTKD--GYFLGTKASTRVF 62
Query: 133 SNTPADFDFKLESLAQGFGSLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKY 188
P D D + +A+ + A L AN+D+ FP IHG GEDG IQ +L
Sbjct: 63 DGEPED-DVARQEIAK-LDKANPLAPVLNLGEDANIDVFFPIIHGNLGEDGTIQGLLRLL 120
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
P+VG+G +FDK IT L G EL +
Sbjct: 121 GKPYVGSGVLGSAMSFDKD-----------ITKKILKLAGVATTRYELLTPLTVERYSYQ 169
Query: 249 S------GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGS 300
S + VKP GSS+G+ +++ ++ I + D +V+ E +EG
Sbjct: 170 SLSEELGSTLFVKPANQGSSVGIH----KVENAEEYSEAIRDAFRYDSKVLAEEAIEGPE 225
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL + HP+ ++V G++ V DA + Y K++ QV + P
Sbjct: 226 ELEISVLG-----NNHPIA---SKV-----GAIKVPATDAFYTYDNKFVDASQVKFDVPV 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + + A ++ LGL ARID FL S +ET Y S +
Sbjct: 273 DISEDLAQKLTKMALDSYRALGLKGMARID--FL------VSQAETPYVS---------E 315
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTII 452
+N + G S Q + G S+S+++ +I
Sbjct: 316 VNTLPGFTNISLYPQLFAASGISYSDLIDRLI 347
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 114/293 (38%), Gaps = 71/293 (24%)
Query: 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 693
N F +HG +GEDGT+Q LL G PY G GV+ S DK T L LA GV
Sbjct: 95 NIDVFFPIIHGNLGEDGTIQGLLRLLGKPYVGSGVLGSAMSFDKDITKKILK-LA--GVA 151
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T R E L + ++ S+ TL VKPA G S G+ ++ AE+ Y +
Sbjct: 152 TT-----RYELLTPLTVERYSYQSLSEELGSTLFVKPANQGSSVGIHKVENAEE---YSE 203
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
A+ + +S A IE P
Sbjct: 204 AIRDAFRY---DSKVLAEEAIEGPE----------------------------------- 225
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP------AS 867
E+ + V+G + S + ++ V + + + KF + + P A
Sbjct: 226 -----ELEISVLGNNHPIASKVGAIKVPATDAFYTYDNKFVDASQVKFDVPVDISEDLAQ 280
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEV-LIIEVNTVPGMT 919
++ ALD + AL L+G +RID V+ E + EVNT+PG T
Sbjct: 281 KLTKMALDSYR--------ALGLKGMARIDFLVS--QAETPYVSEVNTLPGFT 323
>gi|269129158|ref|YP_003302528.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
gi|268314116|gb|ACZ00491.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
Length = 319
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 148/373 (39%), Gaps = 74/373 (19%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
++ GG S ER +SL S R V D ++ D+ + + D L
Sbjct: 14 VLAGGLSYEREVSLRSGRRVADALRALDVDAQVHDADATL-------------------- 53
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
L++L Q A D VFP +HG GEDG I++VLE VP+VG ACR
Sbjct: 54 -LQTLQQ-------------APPDAVFPVLHGSMGEDGAIRDVLELVGVPYVGARPDACR 99
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF--VTNKLDPNSGKVVVKPTRA 259
A+DK A + G T PS L ++ + V +L + VKP R
Sbjct: 100 VAWDKPTAKSVVRAAGLATPPSVTLPKEVFHDLGAAAVLECVVRRL---GLPLFVKPARG 156
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GS++G +V D G G D ++E +E G+E V++ D PV
Sbjct: 157 GSALGASVVREAGDLPAAMVGCFAYG--DAALIERHIE-GTEVAVSVIE----RDGEPVA 209
Query: 320 LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
L +V++ +++Y +Y + TP R P V E A +
Sbjct: 210 L----------PAVEIVPAGELYDYTARY-DAGDTEFVTPARLPEEVARRAAEAAVTAHR 258
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
LGL D +R D E G + F ++N+ GM +TS + +
Sbjct: 259 ALGLRDLSRTDLIV-----------------DEAGQVHFLEVNVAPGMTETSLFPRAVAA 301
Query: 440 VGFSHSNILRTII 452
G + IL +I
Sbjct: 302 AGLNLGRILHDLI 314
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 112/303 (36%), Gaps = 86/303 (28%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG +GEDG ++ +LE GVPY G A + DK
Sbjct: 64 AVFPVLHGSMGEDGAIRDVLELVGVPYVGARPDACRVAWDK----------------PTA 107
Query: 697 KDVRRKEDLLKTPIV----DIWHELTSK--LQCKT------LCVKPARDGCSTGVARLCC 744
K V R L P V +++H+L + L+C L VKPAR G + G + +
Sbjct: 108 KSVVRAAGLATPPSVTLPKEVFHDLGAAAVLECVVRRLGLPLFVKPARGGSALGASVVRE 167
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
A DL A+ C A+G
Sbjct: 168 AGDLP---AAMVGCF----------AYG-------------------------------- 182
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP- 863
D + + + E+ V VI + G +L P+V + +G++ ++ G +TP
Sbjct: 183 --DAALIERHIEGTEVAVSVIERDGEPVAL-PAVEIVPAGELYDYTARYDAGDTEFVTPA 239
Query: 864 --PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921
P R AL L SR D V+ + G+V +EVN PGMT +
Sbjct: 240 RLPEEVARRAAEAAVTAHR------ALGLRDLSRTDLIVD-EAGQVHFLEVNVAPGMTET 292
Query: 922 TVL 924
++
Sbjct: 293 SLF 295
>gi|34497927|ref|NP_902142.1| D-alanyl-alanine synthetase A [Chromobacterium violaceum ATCC
12472]
gi|39930968|sp|Q7NV72.1|DDLA_CHRVO RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|34103782|gb|AAQ60143.1| D-alanine-D-alanine ligase [Chromobacterium violaceum ATCC 12472]
Length = 366
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 150/384 (39%), Gaps = 49/384 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVGLI GG S+E +SL SAR++L I G+ V +D+ +A ++ N
Sbjct: 4 IRVGLIFGGQSSEHEVSLQSARNILQAIDGERFEVSLIGVDKQGRWHASQASNFLLNADD 63
Query: 138 DFDFKL----ESLA----QGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
L E+LA + G L A H A +D+ FP +HG GEDG +Q +L
Sbjct: 64 PGRIALRESGENLALVPGECSGQLQTAANAHPLAQIDVAFPIVHGTLGEDGSLQGLLRMA 123
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+PFVG G DK A + G P L S+ ++LS L
Sbjct: 124 NIPFVGAGVLGSAVCMDKDVAKRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGL--- 180
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ VKP GSS+GV+ D L+ A D +V+VE +
Sbjct: 181 --PLFVKPANQGSSVGVSKVKREAD-LRAALDEAFR-YDHKVLVEQAV------------ 224
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
+G +C +L E + G ++ D + Y KYL P P
Sbjct: 225 IGREIEC---AVLGNE-RPRASGCGEIVLSDEFYAYDTKYLNEDGARVAVPADIPDEACQ 280
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
IR A FQ L AR+D + P G ++ ++N + G
Sbjct: 281 RIRGIAIEAFQALECSGMARVDVFLTPD-----------------GEVVINELNTLPGFT 323
Query: 429 QTSFLFQQASKVGFSHSNILRTII 452
S + G S+ ++ +I
Sbjct: 324 NISMYPKLWQAAGMSYRELITALI 347
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 24/120 (20%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
F VHG +GEDG+LQ LL +P+ G GV+ S CMDK +
Sbjct: 101 VAFPIVHGTLGEDGSLQGLLRMANIPFVGAGVLGSAVCMDK----------------DVA 144
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDL 748
K + R L P V + + L VKPA G S GV+++ DL
Sbjct: 145 KRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGLPLFVKPANQGSSVGVSKVKREADL 204
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 875 DKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
D+ QRI IA AL+ G +R+D F+ D GEV+I E+NT+PG T + ++ L
Sbjct: 276 DEACQRIRGIAIEAFQALECSGMARVDVFLTPD-GEVVINELNTLPGFT--NISMYPKLW 332
Query: 931 EQPPMYPHQFFRKVLDLGSER 951
+ M + +++L E+
Sbjct: 333 QAAGMSYRELITALIELALEK 353
>gi|397169235|ref|ZP_10492670.1| D-alanine--D-alanine ligase [Alishewanella aestuarii B11]
gi|396089315|gb|EJI86890.1| D-alanine--D-alanine ligase [Alishewanella aestuarii B11]
Length = 303
Score = 94.4 bits (233), Expect = 3e-16, Method: Composition-based stats.
Identities = 98/380 (25%), Positives = 157/380 (41%), Gaps = 86/380 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S ++VL +Q D +NA+A
Sbjct: 6 KVAVMFGGRSAEREVSLRSGKAVLAALQ-----------DAGINAFA------------- 41
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD K + LA SLS D VF +HGR GEDG +Q L++ +P+ G+G
Sbjct: 42 FDPKEQPLA----SLS---------ADKVFIVLHGRGGEDGTMQGALQQLGLPYTGSGVL 88
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK QG T P +++ + + + + L GKV+VKP
Sbjct: 89 GSALAMDKIRCKWLFQAQGLPTAPFLVVRPGDTDYAAM--------LQQLGGKVMVKPAN 140
Query: 259 AGSSIGVTVAYGVIDSLKKAKGI-ILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSSIG++ A ++ + A I D V+VE +++G EFT +L+
Sbjct: 141 EGSSIGMSAAS---NAAELATAIATAHQYDQEVLVERWIDG-REFTIAILNDQ------- 189
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
+LP V++R A ++Y KY Y P + ++++ A
Sbjct: 190 --VLPI---------VEMRTPRAFYDYEAKY-QANSTEYLCPAPLTAELTAAMQQSALAA 237
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ +G + R+D S H ++N + GM + S + A
Sbjct: 238 FKAVGASGWGRVDLMLDQSGQH-----------------YLLEVNTVPGMTEKSLVPMAA 280
Query: 438 SKVGFSHSNILRTIIGHACS 457
G+S ++ I+ A S
Sbjct: 281 KAAGYSFQQLVLAILQQADS 300
Score = 70.1 bits (170), Expect = 6e-09, Method: Composition-based stats.
Identities = 77/299 (25%), Positives = 122/299 (40%), Gaps = 75/299 (25%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
LA + VFI +HG GEDGT+Q L+ G+PYTG GV+ S MDK+
Sbjct: 49 LASLSADKVFIVLHGRGGEDGTMQGALQQLGLPYTGSGVLGSALAMDKIRCKWLFQA--- 105
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
G+ T V R D T + +L K+ VKPA +G S G++ A +L
Sbjct: 106 QGLPTAPFLVVRPGD---TDYAAMLQQLGGKVM-----VKPANEGSSIGMSAASNAAELA 157
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
+ + AH + E+L+
Sbjct: 158 ---------------TAIATAHQYDQ------EVLV------------------------ 172
Query: 810 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
RW+ E T+ ++ ++P V ++ E K+Q + L P P
Sbjct: 173 -----ERWIDGREFTIAILND-----QVLPIVEMRTPRAFYDYEAKYQANSTEYLCPAPL 222
Query: 867 SIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ T A+ Q+ L A A+ G+ R+D ++ +G+ ++EVNTVPGMT +++
Sbjct: 223 TAELTAAM----QQSALAAFKAVGASGWGRVDLMLD-QSGQHYLLEVNTVPGMTEKSLV 276
>gi|331090915|ref|ZP_08339758.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405469|gb|EGG85002.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 338
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 156/365 (42%), Gaps = 51/365 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ +I GG S E +SL SA +VL H+ + + I R + + Y +
Sbjct: 3 KIAVIFGGCSTEYEVSLQSAYAVLTHLDREKYEIISIGITREGKWFRYYGKEKYISEDTW 62
Query: 139 FDFKL-------ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
+ + + + QG ++ L VD VFP +HG+ GEDG IQ ++E +P
Sbjct: 63 QEKECNPAWILPDRVEQGILECTKEGNRLI-KVDAVFPVLHGKNGEDGTIQGLIELAGLP 121
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
+G G+ + DK A + K+G + +L+ E K D
Sbjct: 122 VIGCGTLSSSLCMDKDKAHRLVEKEGIAVPKAVVLRKGE-------------KADTLVYP 168
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
V VKP RAGSS G+T D K + + DD V++E +EG A++
Sbjct: 169 VFVKPVRAGSSFGITKVDREEDLEKAVELAFVH--DDEVIIEENIEGFEVGCAVL----- 221
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
G D +V E+EL D F+++ KY Q H P R + I+
Sbjct: 222 GND-KLIVGRVDEIELS----------DGFFDFKEKY-TLQNSKIHMPARIDGEIEEKIK 269
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFS--------SSETKYGSTEWGT-ILFTDI- 421
E A +++ L FAR+D + P VF+ +S ++Y + G +LF D+
Sbjct: 270 ETAKKIYRTLSCKGFARVDMFLTPDKRIVFNEVNTIPGFTSHSRYPNMMKGIDMLFEDVL 329
Query: 422 -NLIS 425
NLIS
Sbjct: 330 DNLIS 334
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 112/283 (39%), Gaps = 71/283 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q L+E G+P G G ++S CMDK A + G+
Sbjct: 97 VFPVLHGKNGEDGTIQGLIELAGLPVIGCGTLSSSLCMDK---DKAHRLVEKEGIAVPKA 153
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V RK + T + ++ VKP R G S G+ ++ EDL KA+E
Sbjct: 154 VVLRKGEKADTLVYPVF-------------VKPVRAGSSFGITKVDREEDLE---KAVEL 197
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
FV DE++ N
Sbjct: 198 A------------------------------FVHDDEVIIEE--------------NIEG 213
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ-GGTGINLTPPPASIMSTEALDK 876
E+ V+G + + + + S +EK+ + I++ PA I E +K
Sbjct: 214 FEVGCAVLGNDKLIVGRVDEIEL--SDGFFDFKEKYTLQNSKIHM---PARI-DGEIEEK 267
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K+ + I L +GF+R+D F+ D ++ EVNT+PG T
Sbjct: 268 IKETAKKIYRTLSCKGFARVDMFLTPDK-RIVFNEVNTIPGFT 309
>gi|312133370|ref|YP_004000709.1| ddla [Bifidobacterium longum subsp. longum BBMN68]
gi|311772595|gb|ADQ02083.1| DDlA [Bifidobacterium longum subsp. longum BBMN68]
Length = 395
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 130/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 157 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 213
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 214 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGRE 264
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 265 IECAVLCPKADDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 324
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 325 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 367
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 368 ISMYPKAWDAAGVSYTELITRLI 390
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 189 DAR------NFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232
>gi|312866057|ref|ZP_07726278.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei
F0415]
gi|311098461|gb|EFQ56684.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei
F0415]
Length = 348
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 171/385 (44%), Gaps = 47/385 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ Y+I + A AQ +++ P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYDKFNVKTYFITQ---AGDFIKAQEFTSQPSESE- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A S + + IVFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATVDASQAVKPSDIYQENAIVFPVLHGPMGEDGSIQGFLEVLRLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G ++ E+ + + V VKP G
Sbjct: 124 VAMDKITTKHVLESTGVPQVAYVTYMEGQDMAEA------IARASQKLTYPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A L++A + L+ D R+++E A ++VG +L
Sbjct: 178 SSVGISKA-ETDGELREALELALK-YDSRILIE------QGVVAREIEVG--------IL 221
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
++V+ G +V + A ++Y KY+ +++ P + P V++ +R A F+
Sbjct: 222 GNSQVKTTQPG--EVVKDVAFYDYEAKYI-DNKISMAIPAQVPEEVMDKMRTYAETAFRA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
+G C +R D +FL TE G I ++N + G Q S +
Sbjct: 279 IGGCGLSRCD-FFL----------------TESGEIYLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRFPNLASY 465
G + +++ + G A F S+
Sbjct: 322 GLPYKDLITELAGLAQEMFDKRESH 346
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 114/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
+ A VF +HG +GEDG++Q LE +PY G V++S MDK+ T + L GV
Sbjct: 84 QENAIVFPVLHGPMGEDGSIQGFLEVLRLPYVGTNVLSSSVAMDKITTK---HVLESTGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + I +LT + VKPA G S G+++ +L
Sbjct: 141 PQVAYVTYMEGQDMAEAIARASQKLTYP-----VFVKPANMGSSVGISKAETDGELR--- 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L K R++ +
Sbjct: 193 EALELAL--------------------------------------------KYDSRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + P VK+ E K+ I++ P + + E
Sbjct: 209 QGVVAREIEVGILGNS-QVKTTQPGEVVKDVA-FYDYEAKYIDNK-ISMAIP--AQVPEE 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+DK + E A+ G SR D F+ ++GE+ + E+NT+PG T
Sbjct: 264 VMDKMRTYAETAFRAIGGCGLSRCDFFLT-ESGEIYLNELNTMPGFT 309
>gi|161504434|ref|YP_001571546.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160865781|gb|ABX22404.1| hypothetical protein SARI_02546 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 370
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 163/393 (41%), Gaps = 55/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 10 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 68
Query: 135 TPADFDFKLE--SLAQGFGS-----LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + SLAQ G ++ +D++FP +HG GEDG +Q +L
Sbjct: 69 DPAHIALRPSAISLAQVPGKHEQQLINAQNGQPLPTIDVIFPIVHGTLGEDGSLQGMLRV 128
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+ + DK A + G P L + N S + ++L
Sbjct: 129 ANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRANRHAFSFAEMESRL-- 184
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ VKP GSS+GV+ L +A + E D +VVVE ++ G E VL
Sbjct: 185 -GLPLFVKPANQGSSVGVSKVANEAQYL-QAVALAFE-FDHKVVVEQGIK-GREIECAVL 240
Query: 308 --DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
D C +VL + Y KY+ P + P
Sbjct: 241 GNDSPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPAQIPSG 283
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V + IR A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 284 VNDKIRAIAIQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNISMYP 335
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +++++ +I A R
Sbjct: 336 KLWQAS---------GLGYTDLISRLIELALER 359
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 107 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 163
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 164 FITLTRANRHAFS---------FAEMESRLGLP-LFVKPANQGSSVGVSKVA 205
>gi|311742955|ref|ZP_07716763.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
gi|311313635|gb|EFQ83544.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
Length = 356
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 140/336 (41%), Gaps = 24/336 (7%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R R+ ++ GG S+E G+S +AR VL + D VR I + A+ +A+
Sbjct: 10 RRPRLAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTD-GAWVEETARWDDLA 68
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
P +L FA A D VFP +HG +GEDG +Q +LE ++ +VG
Sbjct: 69 PG-------TLPAVRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGA 121
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
G A + DK S G +P ++ E N V ++ V VK
Sbjct: 122 GVLASAVSMDKPFTKTVFSAAGLPQIPYVTIRPWEWNRERSR---VEARIRALGLPVFVK 178
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P RAGSS GV + D L A + D +V+VE F G E VL G D
Sbjct: 179 PARAGSSSGVAMVES-WDDLDAAV-VAARAFDPKVIVEAFARGKRELECGVL---QGPDG 233
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + E+ + + D +++ KYL V P P+ + IR A
Sbjct: 234 RPVASVVGEITVAAESDHD------FYDFEAKYLDGTSVNL-VPADIPVTLSERIRTYAV 286
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
F+ +G AR+D +FL V + T G T
Sbjct: 287 QAFEAVGCEGLARVD-FFLTDDGLVVNEINTMPGFT 321
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 128/317 (40%), Gaps = 93/317 (29%)
Query: 627 WIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 686
W +LA+ + VF +HG GEDGT+Q LLE + Y G GV+AS MDK
Sbjct: 84 WERLAEFD--AVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDK--------- 132
Query: 687 LADLGVLTINKDVRRKEDLLKTPIVDI----WHELTSKLQCKT------LCVKPARDGCS 736
K V L + P V I W+ S+++ + + VKPAR G S
Sbjct: 133 -------PFTKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGLPVFVKPARAGSS 185
Query: 737 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAH-----GMIEMPNPPPEILIFEPFVE 791
+GVA + +DL V A ++ +F+R G+++ P+ P
Sbjct: 186 SGVAMVESWDDLDAAVVAARAFDPKVIVEAFARGKRELECGVLQGPDGRP---------- 235
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
V+G+ +V + D E
Sbjct: 236 -----------------------------VASVVGEI--------TVAAESDHDFYDFEA 258
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEV 907
K+ GT +NL PA I T +RI A A+ EG +R+D F+ D+G +
Sbjct: 259 KYLDGTSVNLV--PADIPVT-----LSERIRTYAVQAFEAVGCEGLARVDFFLT-DDG-L 309
Query: 908 LIIEVNTVPGMTPSTVL 924
++ E+NT+PG TP ++
Sbjct: 310 VVNEINTMPGFTPFSMF 326
>gi|421765671|ref|ZP_16202452.1| D-alanine--D-alanine ligase A [Lactococcus garvieae DCC43]
gi|407625756|gb|EKF52444.1| D-alanine--D-alanine ligase A [Lactococcus garvieae DCC43]
Length = 349
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/386 (26%), Positives = 165/386 (42%), Gaps = 60/386 (15%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA+SV+ + D V+ Y+I + + Q ++ TPA+ +
Sbjct: 8 LLYGGRSAEREVSVLSAQSVMRAVNYDKFTVKTYFISKTGD---FIKTQEFTETPAEDE- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDI------VFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
Q + + E A DI VFP +HG GEDG IQ LE + +VG
Sbjct: 64 ------QLMTNETVKTEQKVAPSDIYEKDAVVFPVLHGPMGEDGSIQGFLEIMRLAYVGP 117
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
+ DK A S G VP ++ S+ ++ ++ N P V VK
Sbjct: 118 NILSASSTMDKLLAKHVFSAVGVPQVP-YVAAYSDGDQEKIHAAVQANLTFP----VFVK 172
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSGF 313
P GSS+G++ ++SL++ + + E D+RVVVE + E VL G+G
Sbjct: 173 PANMGSSVGIS----KVNSLEELEAGLAEAYKYDNRVVVEQGV-NAREIECAVL--GNGG 225
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
LP EV V++ D ++YR KY+ ++ P P + +R+
Sbjct: 226 KVRST--LPGEV---------VKDVD-FYDYRSKYI-DNKIEMAIPAEVPAEIAQKMRDY 272
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A +Q + +R D ++ E G I +IN I G Q S
Sbjct: 273 AEKAYQAMNGTGLSRCDFFY-----------------DEKGDIYLNEINAIPGFTQWSMY 315
Query: 434 FQQASKVGFSHSNILRTIIGHACSRF 459
+G S+S+++ ++ A F
Sbjct: 316 PLLWENMGLSYSDLIEELVTLAQEAF 341
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 60/287 (20%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE + Y GP ++++ + MDK+ LA + + +GV
Sbjct: 84 EKDAVVFPVLHGPMGEDGSIQGFLEIMRLAYVGPNILSASSTMDKL---LAKHVFSAVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ V D + I H + VKPA G S G++++ E+L
Sbjct: 141 PQVPY-VAAYSDGDQEKI----HAAVQANLTFPVFVKPANMGSSVGISKVNSLEELEA-- 193
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
G+ E K +R++ +
Sbjct: 194 -------------------GLAE--------------------------AYKYDNRVVVE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI V+G G + S +P VK+ D K+ I + P + E
Sbjct: 209 QGVNAREIECAVLGNGGKVRSTLPGEVVKDV-DFYDYRSKYIDNK-IEMAIPAE--VPAE 264
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K + E A+ G SR D F + + G++ + E+N +PG T
Sbjct: 265 IAQKMRDYAEKAYQAMNGTGLSRCDFFYD-EKGDIYLNEINAIPGFT 310
>gi|384202200|ref|YP_005587947.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
KACC 91563]
gi|338755207|gb|AEI98196.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum
KACC 91563]
Length = 395
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 130/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 157 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 213
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 214 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGRE 264
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 265 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 324
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 325 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 367
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 368 ISMYPKAWDATGVSYTELITRLI 390
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 189 DAR------NFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232
>gi|213691237|ref|YP_002321823.1| D-alanyl-alanine synthetase A [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|384198347|ref|YP_005584090.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|259645163|sp|B7GU04.1|DDL_BIFLI RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|213522698|gb|ACJ51445.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|320457299|dbj|BAJ67920.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 395
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 135/326 (41%), Gaps = 48/326 (14%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+ + H A +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 INSADSGFGTSFVSMPDPEMHHALTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG---K 251
G A DK+ + + G T P G V+ + V K++ ++G
Sbjct: 157 CGVFASAACMDKHYTKVVLGAAGIPTAP-----GVTVDARNFTAADVLAKIE-DAGLTYP 210
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+ +KP+RAGSS GVT K K E DR+ + G ++ +V
Sbjct: 211 LFIKPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGID 261
Query: 312 GFDCHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
G + VL P E E + G + D + D +++ KY+ P P+ V
Sbjct: 262 GREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSV 321
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ +R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 322 LEDVRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPG 364
Query: 427 MEQTSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 365 FTPISMYPKAWDATGVSYTELITRLI 390
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ ++ L +KP+R G S GV ++ A+D
Sbjct: 189 DARNFT------AADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADD 232
>gi|374604122|ref|ZP_09677091.1| ligase [Paenibacillus dendritiformis C454]
gi|374390295|gb|EHQ61648.1| ligase [Paenibacillus dendritiformis C454]
Length = 353
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 159/383 (41%), Gaps = 55/383 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLN--AYAISSAQV----YS 133
+ ++ GG S E +SL SA SV+DH+ + I R Y ++ + +
Sbjct: 6 IAVLFGGCSTEYEVSLKSAASVIDHLDRARYHIVMVGITREGRWLKYHGTTEDIRQDRWH 65
Query: 134 NTPADFDFKLESLAQGFGSLSEFA--EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
PA L S ++ G L E+ VD VFP +HG+ GEDG +Q +LE +P
Sbjct: 66 AHPACLPACL-SPSRDVGGLIVLVGTEYHMTPVDAVFPVLHGKNGEDGTVQGLLELSGLP 124
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
FVG G+ + DK A + G T S + E + + +L
Sbjct: 125 FVGCGTLSSAIGMDKAIAHTLVRAAGIETAESVTIYDDEPLDKAVD---AAARL---GFP 178
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+ VKP R+GSS+G+T A + + A I+ D ++V+E + G +VG
Sbjct: 179 LYVKPARSGSSLGITKACNKQELMDGA--ILAFSHDKKIVIEQNVNG--------FEVGC 228
Query: 312 GF--DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
D P+V E+EL +D FNY KY + A H P R S
Sbjct: 229 AVMGDADPIVGEVDEIEL----------RDGFFNYHEKY-TLETSAIHMPARIDADTAAS 277
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
++ A +++ LG AR+D FL T G I+F ++N + G
Sbjct: 278 VKAAALTIYRTLGCRGLARVD-LFL----------------TNEGRIVFNEVNTMPGFTS 320
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S +G S +IL +I
Sbjct: 321 ASRYPNMLRGIGLSFPDILDQLI 343
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH-LADLGVLTIN 696
VF +HG GEDGT+Q LLE G+P+ G G ++S MDK A+ H L +
Sbjct: 100 VFPVLHGKNGEDGTVQGLLELSGLPFVGCGTLSSAIGMDK-----AIAHTLVRAAGIETA 154
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ V +D VD L L VKPAR G S G+ + C ++L
Sbjct: 155 ESVTIYDDEPLDKAVDAAARLGFPLY-----VKPARSGSSLGITKACNKQEL 201
>gi|317481946|ref|ZP_07940971.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA]
gi|322688440|ref|YP_004208174.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
157F]
gi|322690460|ref|YP_004220030.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum
JCM 1217]
gi|419847491|ref|ZP_14370661.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
longum subsp. longum 1-6B]
gi|419851024|ref|ZP_14373983.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
longum subsp. longum 35B]
gi|419852024|ref|ZP_14374928.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
longum subsp. longum 2-2B]
gi|419854991|ref|ZP_14377761.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
longum subsp. longum 44B]
gi|316916513|gb|EFV37910.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA]
gi|320455316|dbj|BAJ65938.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum
JCM 1217]
gi|320459776|dbj|BAJ70396.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
157F]
gi|386407264|gb|EIJ22243.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
longum subsp. longum 35B]
gi|386410886|gb|EIJ25656.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
longum subsp. longum 1-6B]
gi|386412066|gb|EIJ26758.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
longum subsp. longum 2-2B]
gi|386416323|gb|EIJ30825.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
longum subsp. longum 44B]
Length = 395
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 130/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 157 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 213
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 214 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGRE 264
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 265 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 324
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 325 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 367
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 368 ISMYPKAWDATGVSYTELITRLI 390
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 189 DAR------NFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232
>gi|312879691|ref|ZP_07739491.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
gi|310782982|gb|EFQ23380.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
Length = 314
Score = 94.0 bits (232), Expect = 4e-16, Method: Composition-based stats.
Identities = 91/375 (24%), Positives = 156/375 (41%), Gaps = 72/375 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++V + CGG S ER +SL S ++V + A A++ QV+
Sbjct: 1 MKVLVACGGDSPERAVSLRSGKAVAE-------------------ALAVAGHQVF----- 36
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
LE L G + E A A D+VF +HG +GEDG +Q VLE + +P+ G+G
Sbjct: 37 -----LEDLPTCLGVV-EAARDRGA--DLVFVALHGGWGEDGRLQAVLEAHGIPYTGSGP 88
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+C A DK +G P + + + +L + G + +KP
Sbjct: 89 ESCMAAMDKELTRAVFLDRGLPVPPGKVYEREDAALPDLESLMAR-----EGGHLALKPC 143
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GS++GV++ + D L++A+ + L+ DDR+V E F+ G E T V + G P
Sbjct: 144 CCGSTVGVSLVHRPED-LREARDLALK-YDDRLVAERFIP-GRELTVAVFEEGGRPRALP 200
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
++++R + ++YR KY + Y P + + A
Sbjct: 201 --------------AIEIRPHEGFYDYRNKY-TSGATEYLCPAPLEEALAARVGSLAEAA 245
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
+ LG ++R+D + +E G ++N GM TS + +
Sbjct: 246 HRALGCRVYSRVD-----------------FRLSEEGEPFLLEVNTAPGMTGTSLVPKAG 288
Query: 438 SKVGFSHSNILRTII 452
+ VG+S + I+
Sbjct: 289 AAVGWSFPQVTDRIV 303
Score = 68.6 bits (166), Expect = 2e-08, Method: Composition-based stats.
Identities = 77/288 (26%), Positives = 116/288 (40%), Gaps = 62/288 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF+A+HGG GEDG LQ++LEA G+PYTG G ++CM + L D G+
Sbjct: 58 VFVALHGGWGEDGRLQAVLEAHGIPYTGSG---PESCMAAMDKELTRAVFLDRGLPVPPG 114
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V +ED P +L S + AR+G + CC + V
Sbjct: 115 KVYERED-AALP------DLESLM---------AREGGHLALKPCCCGSTVGV------- 151
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
++ P E E ++ K DRL+ +
Sbjct: 152 --------------SLVHRP---------EDLREARDLAL------KYDDRLVAERFIPG 182
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL-DK 876
E+TV V + G +L P++ ++ K+ G L P P EAL +
Sbjct: 183 RELTVAVFEEGGRPRAL-PAIEIRPHEGFYDYRNKYTSGATEYLCPAPLE----EALAAR 237
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
E AL +SR+D F + GE ++EVNT PGMT ++++
Sbjct: 238 VGSLAEAAHRALGCRVYSRVD-FRLSEEGEPFLLEVNTAPGMTGTSLV 284
>gi|23464945|ref|NP_695548.1| D-alanyl-alanine synthetase A [Bifidobacterium longum NCC2705]
gi|39930901|sp|Q8G7C4.1|DDL_BIFLO RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|23325541|gb|AAN24184.1| D-alanine--D-alanine ligase [Bifidobacterium longum NCC2705]
Length = 428
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 130/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 130 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 189
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 190 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 246
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 247 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGRE 297
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 298 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 357
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 358 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 400
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 401 ISMYPKAWDATGVSYTELITRLI 423
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 162 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 221
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 222 DAR------NFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 265
>gi|296453460|ref|YP_003660603.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
JDM301]
gi|296182891|gb|ADG99772.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
JDM301]
Length = 395
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 135/326 (41%), Gaps = 48/326 (14%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG---K 251
G A DK+ + + G T P G V+ + V K++ ++G
Sbjct: 157 CGVFASAACMDKHYTKVVLGAAGIPTAP-----GVTVDARNFTAADVLAKIE-DAGLTYP 210
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+ +KP+RAGSS GVT K K E DR+ + G ++ +V
Sbjct: 211 LFIKPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGID 261
Query: 312 GFDCHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
G + VL P E E + G + D + D +++ KY+ P P+ V
Sbjct: 262 GREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSV 321
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ +R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 322 LEDVRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPG 364
Query: 427 MEQTSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 365 FTPISMYPKAWDATGVSYTELITRLI 390
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ ++ L +KP+R G S GV ++ A+D
Sbjct: 189 DAR------NFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADD 232
>gi|227545759|ref|ZP_03975808.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
ATCC 55813]
gi|227213875|gb|EEI81714.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
ATCC 55813]
Length = 397
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 130/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 99 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 158
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 159 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 215
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 216 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGRE 266
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 267 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 326
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 327 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 369
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 370 ISMYPKAWDATGVSYTELITRLI 392
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 131 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 190
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 191 DARNFT------AADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 234
>gi|423106896|ref|ZP_17094591.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5243]
gi|376389022|gb|EHT01714.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5243]
Length = 365
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 165/373 (44%), Gaps = 50/373 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GQWHINDASNYLLNPQ 62
Query: 138 D--------FDFKLESL----AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
D D L + AQ + ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSDITLAQIPGREAQQLIN-ADSGQPLAA-IDVIFPIVHGTLGEDGSLQGML 120
Query: 186 EKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
N+PFVG+ GS AC DK D + + + +++ F+ + N +++S V
Sbjct: 121 RMANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRNQVSFAEVQ 175
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ + ++A + E D +VVVE ++ G E
Sbjct: 176 AKL---GLPLFVKPANQGSSVGVS-KVNSEEQYQQAVALAFE-FDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ Q P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDQGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
V + IRE A +Q LG AR+D + + V + T G T ++
Sbjct: 273 AIDSDVNDKIREIAVRAYQTLGCSGMARVDVFLTADNDVVINEINTLPGFTNIS--MYPK 330
Query: 421 INLISGMEQTSFL 433
+ SG++ TS +
Sbjct: 331 LWQASGLDYTSLI 343
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 114/285 (40%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L L+ +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + E+ +KL L VKPA G S GV+++ E Y +A
Sbjct: 161 LTRANRNQVS---------FAEVQAKLGLP-LFVKPANQGSSVGVSKVNSEEQ---YQQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A + ++
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--NSEFYAYDTKYIDDQGAKVVVPAA--IDSDVN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK ++ L G +R+D F+ DN +V+I E+NT+PG T
Sbjct: 280 DKIREIAVRAYQTLGCSGMARVDVFLTADN-DVVINEINTLPGFT 323
>gi|300362570|ref|ZP_07058746.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03]
gi|300353561|gb|EFJ69433.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03]
Length = 375
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 165/390 (42%), Gaps = 52/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSNTP 136
++VGLI GG S+E +S+ SA ++ + I + V +I + A S +V N
Sbjct: 19 IKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRRVLDNP- 77
Query: 137 ADFDFKLE-SLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
K+E + ++S E +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 78 -----KMEVANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVG 132
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGK 251
A DK + + G ++ E N+ +L +V ++L
Sbjct: 133 DDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQL---GSD 189
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
+ VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 190 LFVKPSNQGSSVGVS----HVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL--- 242
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ + KD+ + Y KY P + P ++
Sbjct: 243 --GND-KPIVAGVGQI---------INAKDSFYTYENKYDDDSTSTLEIPAKLPEGIVEK 290
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A +FQ ARID TE ++ T++N + G
Sbjct: 291 VRKNALKVFQATECSGLARIDSML----------------RTEAKEVVLTEVNALPGFTN 334
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + +VG +++++ +I +A R+
Sbjct: 335 ISMYPKLFEEVGIPYTDLITKLIDYAMERY 364
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 101/461 (21%), Positives = 170/461 (36%), Gaps = 117/461 (25%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+V +IFGG++SE +VS+MS N++ + N +V P + + D + D D+
Sbjct: 20 KVGLIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWITN--------DGYLAD-DAD 69
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR V P +E P + A S++
Sbjct: 70 SRRVLDNP---------------KMEVANPHKVANISNIV-------------------- 94
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
EL R I+ F VHG +GEDG LQ L P+ G V+A+
Sbjct: 95 ----ELKDRPEID-----------VFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAA 139
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPA 731
MDK T + LA + + K + K P + + +E + L VKP+
Sbjct: 140 VTMDKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPS 195
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV+ + ++ V AL E F
Sbjct: 196 NQGSSVGVSHVTNEKEYKV---ALAEA------------------------------FKY 222
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
D++L + + GN + + VG I + K+S + E
Sbjct: 223 DDKVLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYEN 267
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ + L P + ++K ++ + A + G +RID+ + + EV++ E
Sbjct: 268 KYDDDSTSTLEIPAK--LPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEAKEVVLTE 325
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
VN +PG T + ++ L E+ + K++D ER+
Sbjct: 326 VNALPGFT--NISMYPKLFEEVGIPYTDLITKLIDYAMERY 364
>gi|386578193|ref|YP_006074599.1| D-alanine--D-alanine ligase [Streptococcus suis GZ1]
gi|292558656|gb|ADE31657.1| D-alanine--D-alanine ligase [Streptococcus suis GZ1]
Length = 341
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 154/352 (43%), Gaps = 63/352 (17%)
Query: 57 RASAEVLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116
R A + E + M+KE + L+ GG SAER +S+ SA SV+ I D V+ Y+
Sbjct: 8 RVIALIQEGKYMSKET-------LILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYF 60
Query: 117 IDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFG 176
I + + Q +S TP+ D KL + A + +VFP +HG G
Sbjct: 61 ISQTGD---FIKTQEFSQTPSA-DEKLMTNATIVEEQKIRPSDIYEEKAVVFPVLHGPMG 116
Query: 177 EDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESE 235
EDG IQ LE +P+VGT + A DK + G VP +++G ++
Sbjct: 117 EDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGISQVPYVAVIEGENID--- 173
Query: 236 LSNWFVTNKLDPNSGK----VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
+K+ GK V VKP GSS+G++ A + L+KA + + D RV+
Sbjct: 174 -------DKIAEIEGKLTYPVFVKPANMGSSVGISKAED-LAGLRKALDLAFK-YDSRVL 224
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFN 343
VE G + E+E+ G+ DV+ KD A ++
Sbjct: 225 VE-----------------QGVNAR-------EIEVGLLGNADVKTTLPGEVVKDVAFYD 260
Query: 344 YRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395
Y KY+ ++ P + +++ +R+ A+ F+ +G C +R D F P
Sbjct: 261 YDAKYI-DNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCD--FFP 309
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 102 EEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLES---AGI 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I +I +LT + VKPA G S G+++ AEDL
Sbjct: 159 SQVPYVAVIEGENIDDKIAEIEGKLTY-----PVFVKPANMGSSVGISK---AEDLAGLR 210
Query: 753 KALE 756
KAL+
Sbjct: 211 KALD 214
>gi|365104886|ref|ZP_09334278.1| D-alanine-D-alanine ligase A [Citrobacter freundii 4_7_47CFAA]
gi|363643827|gb|EHL83131.1| D-alanine-D-alanine ligase A [Citrobacter freundii 4_7_47CFAA]
Length = 370
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 170/399 (42%), Gaps = 67/399 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y S+
Sbjct: 10 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GQWHVSDASSYLLNSD 68
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 69 DPAHIALRPSETSLAQVPGK----QEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 124
Query: 184 VLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
+L N+PFVG+ GS AC DK D + + + + + F+ + N + +S
Sbjct: 125 MLRVANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFITL-TRANRNSISFAE 179
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGG 299
V ++L + VKP GSS+GV+ V + + + L D +VVVE ++ G
Sbjct: 180 VESRL---GLPLFVKPANQGSSVGVS---KVTSEAQYDQAVALAFEFDHKVVVEQGIK-G 232
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
E VL G D HP E+ L + Y KY+ P
Sbjct: 233 REIECAVL----GND-HPQASTCGEIVLNSD----------FYAYDTKYIDDNGAKVVVP 277
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ + IRE A +Q LG AR+D VF ++E ++
Sbjct: 278 AAIAPEINDKIREIAIQAYQTLGCAGMARVD---------VFLTAEND--------VVIN 320
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+IN + G S + G +++++ +I A R
Sbjct: 321 EINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 359
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 108 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFIT 166
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R + + + E+ S+L L VKPA G S GV+++
Sbjct: 167 LTRANRNSIS------FAEVESRLGLP-LFVKPANQGSSVGVSKV 204
>gi|423112779|ref|ZP_17100470.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5245]
gi|376390273|gb|EHT02959.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5245]
Length = 365
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 165/373 (44%), Gaps = 50/373 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GQWHINDASNYLLNPQ 62
Query: 138 D--------FDFKLESL----AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
D D L + AQ + ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSDITLAQIPGREAQQLIN-ADSGQPLAA-IDVIFPIVHGTLGEDGSLQGML 120
Query: 186 EKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
N+PFVG+ GS AC DK D + + + +++ F+ + N +++S V
Sbjct: 121 RMANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRNQVSFAEVQ 175
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ + ++A + E D +VVVE ++ G E
Sbjct: 176 AKL---GLPLFVKPANQGSSVGVS-KVNSEEQYQQAVALAFE-FDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ Q P
Sbjct: 230 ECAVLGNDNPEASTCGEIVL-----------------NSEFYAYDTKYIDDQGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
V + IRE A +Q LG AR+D + + V + T G T ++
Sbjct: 273 AIDSDVNDKIREIAVRAYQTLGCSGMARVDVFLTADNDVVINEINTLPGFTNIS--MYPK 330
Query: 421 INLISGMEQTSFL 433
+ SG++ TS +
Sbjct: 331 LWQASGLDYTSLI 343
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 114/285 (40%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L L+ +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + E+ +KL L VKPA G S GV+++ E Y +A
Sbjct: 161 LTRANRNQVS---------FAEVQAKLGLP-LFVKPANQGSSVGVSKVNSEEQ---YQQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A + ++
Sbjct: 228 ----EIECAVLGNDNPEASTCGEIVL--NSEFYAYDTKYIDDQGAKVVVPAA--IDSDVN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK ++ L G +R+D F+ DN +V+I E+NT+PG T
Sbjct: 280 DKIREIAVRAYQTLGCSGMARVDVFLTADN-DVVINEINTLPGFT 323
>gi|302865845|ref|YP_003834482.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
gi|315502390|ref|YP_004081277.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
gi|302568704|gb|ADL44906.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
gi|315409009|gb|ADU07126.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
Length = 367
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 164/395 (41%), Gaps = 54/395 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAISS- 128
RV ++ GG S E GIS SA SVL + D+ V I R + + AI+
Sbjct: 8 RVAIVFGGRSPEHGISCVSAGSVLAALDPDEFEVVPVGITRQGQWVLASGDPSGLAIADR 67
Query: 129 --AQVYSNTPADFDFKLESLAQGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVL 185
++ + + A+ + + G L +A A+VD+VFP +HG +GEDG IQ +L
Sbjct: 68 KLPEITAGSGAELVLRADPAVGGLMVLDPAQGPVALADVDVVFPVLHGAYGEDGTIQGML 127
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNESELSNWFVTNK 244
E ++P+VG A A DK + +G P +L+ G +++ + +
Sbjct: 128 EMADIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRAGMSLSDEDKERLGL--- 184
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
V VKP+RAGSS G+T D A + ID +V+VE + G E
Sbjct: 185 ------PVFVKPSRAGSSFGITKVDDWAD--LDAALVTAREIDSKVLVEGAVV-GREIEC 235
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTPPRFP 363
VL+ +G VL E++ G D +++ KY+ +V Y P P
Sbjct: 236 GVLEGEAGGAPEASVL----AEVRMIGDRD------WYDFEAKYIFADEVCEYDVPADLP 285
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V +R+ A+ F L AR+D + P + +IN
Sbjct: 286 EPVARQVRDYATRAFTALDCSGLARVDFFVTPQM-----------------DVYLNEINT 328
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G TS + S G + ++ +I A R
Sbjct: 329 MPGFTPTSMFPRMWSASGLEYPKLVNRLIRTALHR 363
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 677
VF +HG GEDGT+Q +LE +PY G V AS MDK
Sbjct: 108 VVFPVLHGAYGEDGTIQGMLEMADIPYVGANVFASAAAMDK 148
>gi|46190210|ref|ZP_00121771.2| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
[Bifidobacterium longum DJO10A]
gi|189439975|ref|YP_001955056.1| D-alanyl-alanine synthetase A [Bifidobacterium longum DJO10A]
gi|259645162|sp|B3DTT9.1|DDL_BIFLD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|189428410|gb|ACD98558.1| D-alanine-D-alanine ligase [Bifidobacterium longum DJO10A]
Length = 395
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 130/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 157 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 213
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 214 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGRE 264
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 265 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 324
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 325 VRDVARRAFKAVDGVGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 367
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 368 ISMYPKAWDATGVSYTELITRLI 390
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 189 DAR------NFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232
>gi|289522342|ref|ZP_06439196.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289504178|gb|EFD25342.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 316
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 166/390 (42%), Gaps = 85/390 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ--GDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+RV ++ GG S ER +SL S ++VL+ G D+L C
Sbjct: 1 MRVLVLYGGDSPEREVSLASGKAVLEAASRCGFDVLDGC--------------------- 39
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+E++ ++E + D++F +HG +GEDG +Q L+ Y++P+ G+
Sbjct: 40 -------VETVKDVVRLMNE------RDCDVIFIALHGSWGEDGRLQAFLDFYDIPYTGS 86
Query: 196 GSRACRQAFDKYDASLEMSKQGFIT---VPSFLLQ----GSEVNESELSNWFVTNKLDPN 248
GS AC A +K + + G T V + L Q G+ E ++F+ N
Sbjct: 87 GSEACMLAMNKVLSKYRFQRDGIPTPDGVEANLFQEGINGACKKILEYYDYFL------N 140
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
GK+V+KP R GS++GV+V D + + + D ++ E ++ G E T V D
Sbjct: 141 GGKMVIKPARCGSTLGVSVITSSSDLYEAVQ--LASSYDSLIIAERYIS-GKEITVAVWD 197
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G P+ +++ K+++++Y+ KY P AY P + +
Sbjct: 198 DGKP-QAFPI--------------IEIVPKNSLYSYKAKYTPGNS-AYFVPAQLEDSIAK 241
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+E A + LG ++R+D + T G ++N + G+
Sbjct: 242 KAQEAALMAHISLGCELYSRVD---MRLDTQ--------------GNPYVLEVNTVPGLT 284
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
TS + + A +G+ ++ +I + ++
Sbjct: 285 STSLVPKAAKAIGWDFDRFVKELIQNTLNK 314
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 128/321 (39%), Gaps = 63/321 (19%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATV-FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
GFD+ D ++ + ++L E V FIA+HG GEDG LQ+ L+ +PYTG G
Sbjct: 32 GFDVLDGCV--ETVKDVVRLMNERDCDVIFIALHGSWGEDGRLQAFLDFYDIPYTGSGSE 89
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINK-DVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728
A M+KV L+ G+ T + + ++ + I L + +
Sbjct: 90 ACMLAMNKV---LSKYRFQRDGIPTPDGVEANLFQEGINGACKKILEYYDYFLNGGKMVI 146
Query: 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788
KPAR G + GV+ + + DL + +++ + ++I E
Sbjct: 147 KPARCGSTLGVSVITSSSDL----------------------YEAVQLASSYDSLIIAER 184
Query: 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 848
++ EI + K P + + + S
Sbjct: 185 YISGKEITVAVWDDGK---------------------------PQAFPIIEIVPKNSLYS 217
Query: 849 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAFVNVDNGEV 907
+ K+ G P +++ K Q L+A+ +L E +SR+D ++ G
Sbjct: 218 YKAKYTPGNSAYFVPAQLE----DSIAKKAQEAALMAHISLGCELYSRVDMRLDT-QGNP 272
Query: 908 LIIEVNTVPGMTPSTVLIHQA 928
++EVNTVPG+T ST L+ +A
Sbjct: 273 YVLEVNTVPGLT-STSLVPKA 292
>gi|423118883|ref|ZP_17106567.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5246]
gi|376399529|gb|EHT12143.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5246]
Length = 365
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 167/396 (42%), Gaps = 61/396 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GLWHINDAGNYLLNPQ 62
Query: 138 D--------FDFKLESL----AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
D D L + AQ + ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALRPSDVTLAQIPGRDAQQLIN-ADSGQPLAA-IDVIFPIVHGTLGEDGSLQGML 120
Query: 186 EKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
N+PFVG+ GS AC DK + G P L + N + S V
Sbjct: 121 RMANLPFVGSDVLGSAAC---MDKDVTKRLLRDAGLAIAPFITL--TRANRQQFSFTQVQ 175
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
+KL + VKP GSS+GV+ + ++A + E D +VVVE ++ G E
Sbjct: 176 DKL---GLPLFVKPANQGSSVGVS-KVNSEEQYQQAVALAFE-FDHKVVVEQGIK-GREI 229
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL G D HP E+ L + + Y KY+ Q P
Sbjct: 230 ECAVL----GND-HPQASTCGEIVLNSE----------FYAYDTKYIDDQGAKVVVPAAI 274
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
+ + IR+ A +Q LG AR+D + TE ++ +IN
Sbjct: 275 ASDINDKIRDIAIQAYQTLGCSGMARVDVFL-----------------TEENEVIINEIN 317
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + G +++++ +I A R
Sbjct: 318 TLPGFTNISMYPKLWQASGLDYTSLISRLIELALER 353
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 114/285 (40%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L LA +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLAIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R++ + ++ KL L VKPA G S GV+++ E Y +A
Sbjct: 161 LTRANRQQFS---------FTQVQDKLGLP-LFVKPANQGSSVGVSKVNSEEQ---YQQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++++
Sbjct: 228 ----EIECAVLGNDHPQASTCGEIVL--NSEFYAYDTKYIDDQGAKVVVPAA--IASDIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRDIAIQAYQTLGCSGMARVDVFLTEEN-EVIINEINTLPGFT 323
>gi|440229986|ref|YP_007343779.1| D-alanine--D-alanine ligase [Serratia marcescens FGI94]
gi|440051691|gb|AGB81594.1| D-alanine--D-alanine ligase [Serratia marcescens FGI94]
Length = 368
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 167/392 (42%), Gaps = 55/392 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SNT 135
RVG+I GG SAE +SL SA++++D I + V ID+ + I+ A Y +
Sbjct: 5 RVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GQWHINDASNYLLHAEN 63
Query: 136 PA----DFDFKLESLAQGFGSLSEFAEHLAANV----DIVFPTIHGRFGEDGGIQEVLEK 187
PA + K +L G S S+ E +ANV D+VFP +HG GEDG +Q +L
Sbjct: 64 PALIALNHSNKNVALVPGQES-SQLIEADSANVIGQLDVVFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK + G P L S N ++ S ++ +L
Sbjct: 123 ANIPFVGAGVLGSAVSMDKDVTKRLLRDAGLEVAPFVTLTRS--NRAQHSFEQLSAQL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ +KP GSS+GV+ V D + + L D +V+VE +AI
Sbjct: 179 -GSPLFIKPANQGSSVGVS---RVSDPAGYEQAVALAFSFDHKVLVE---------SAI- 224
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
VG +C VL + + G + + D ++Y KY+ Q P
Sbjct: 225 --VGREIEC--AVLGNDQPQASLCGEIVL--SDEFYSYDTKYINEQGAQVVVPAAISEQA 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ +R+ A F+ L AR+D + TE ++ +IN + G
Sbjct: 279 SDKVRDVALRAFRALDCLGMARVDVFL-----------------TEDERVIVNEINTLPG 321
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G S+S ++ T+I A R
Sbjct: 322 FTNISMYPKLWAASGMSYSQLITTLIELALER 353
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 126/320 (39%), Gaps = 72/320 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
VF VHG +GEDG+LQ LL +P+ G GV+ S MDK T L D G+
Sbjct: 101 VVFPIVHGTLGEDGSLQGLLRMANIPFVGAGVLGSAVSMDKDVTKRLLR---DAGLEVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+T+ + R + + +L+++L L +KPA G S GV+R+
Sbjct: 158 FVTLTRSNRAQHS---------FEQLSAQL-GSPLFIKPANQGSSVGVSRVS-------- 199
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
P + +A + F ++L S +
Sbjct: 200 -----------DPAGYEQAVAL--------------AFSFDHKVLVESAIVGR------- 227
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
EI V+G SL + + S + S + K+ G + P A +S
Sbjct: 228 -------EIECAVLGNDQPQASLCGEIVL--SDEFYSYDTKYINEQGAQVVVPAA--ISE 276
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
+A DK + AL G +R+D F+ D V++ E+NT+PG T + ++ L
Sbjct: 277 QASDKVRDVALRAFRALDCLGMARVDVFLTEDE-RVIVNEINTLPGFT--NISMYPKLWA 333
Query: 932 QPPMYPHQFFRKVLDLGSER 951
M Q +++L ER
Sbjct: 334 ASGMSYSQLITTLIELALER 353
>gi|170767847|ref|ZP_02902300.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627]
gi|170123335|gb|EDS92266.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627]
Length = 364
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 163/398 (40%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LR+G++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRIGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDANNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK + G P L + N ++S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDKDITKRLLRDAGLNIAPFITL--TRANRHKISFAEVQS 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDDPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 NIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENDVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G S+++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLSYTDLITRLIELALER 353
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 126/317 (39%), Gaps = 68/317 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDITKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R K + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHKIS---------FAEVQSKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P + ++ E
Sbjct: 228 ----EIECAVLGNDDPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVP--ANIAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
DK + L G +R+D F+ +N +V+I E+NT+PG T + ++ L +
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-DVVINEINTLPGFT--NISMYPKLWQASG 336
Query: 935 MYPHQFFRKVLDLGSER 951
+ ++++L ER
Sbjct: 337 LSYTDLITRLIELALER 353
>gi|424788194|ref|ZP_18214953.1| D-alanine--D-alanine ligase [Streptococcus intermedius BA1]
gi|422112958|gb|EKU16715.1| D-alanine--D-alanine ligase [Streptococcus intermedius BA1]
Length = 348
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 164/376 (43%), Gaps = 49/376 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S+ PAD
Sbjct: 5 QIILLYGGRSAERKVSVLSAESVMHAINYDKFFVKTYFITQ---AGDFIKTQEFSSKPAD 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 62 -DEKLMTNDTVIESQKMKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G +V E +++ N + V KP
Sbjct: 121 SSSIAMDKITTKRVLASAGIPQVPYVAVVEGEDVEEK-------IAEVEVNLTYPVFTKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L+ A + + D RV++E A ++VG +
Sbjct: 174 SNMGSSVGISKSENK-DELRSALKLAFK-YDSRVLIE------QGVNAREIEVGLFGNEG 225
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV DV A ++Y KY+ ++ P + VI ++R+ A
Sbjct: 226 AKSSLPGEV------VKDV----AFYDYEAKYI-DNKITMDIPAKLSEDVIATMRDYAEK 274
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F +G +R D ++ T+ G I ++N + G Q S
Sbjct: 275 AFHAIGGVGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMYPLL 317
Query: 437 ASKVGFSHSNILRTII 452
+G S+S+++ ++
Sbjct: 318 WENMGLSYSDLIEQLV 333
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 113/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSIAMDKITTKRV---LASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + ++ I ++ LT + KP+ G S G+++ ++L +
Sbjct: 141 PQVPYVAVVEGEDVEEKIAEVEVNLTY-----PVFTKPSNMGSSVGISKSENKDELRSAL 195
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F K R++ +
Sbjct: 196 K------------------------------LAF-----------------KYDSRVLIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG+ G G+ SL P VK+ E K+ I + P +S +
Sbjct: 209 QGVNAREIEVGLFGNEGAKSSL-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + E +A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 264 VIATMRDYAEKAFHAIGGVGLSRCD-FFYTDKGEIFLNELNTMPGFT 309
>gi|333923548|ref|YP_004497128.1| D-alanine--D-alanine ligase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749109|gb|AEF94216.1| D-alanine--D-alanine ligase [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 311
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 153/358 (42%), Gaps = 71/358 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L+VG++CGG SAER +SL S +V L+ C Y ++
Sbjct: 3 LKVGVLCGGRSAEREVSLRSGEAVYQA------LLNCGYDVVKIDV-------------- 42
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
GF + +H +++ F +HG++GEDG IQ +LE ++P+ G+G
Sbjct: 43 -----------GFDIAEQIKQH---QIELAFLALHGKYGEDGTIQGLLELLDIPYTGSGV 88
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV----TNKLDPNSGKVV 253
A A +K +G I P F + + +E+SN + LD V
Sbjct: 89 LASAIAINKITTKKLFKLEG-IPTPDFTV----ITRNEVSNLGLDQACKKALDLVGLPAV 143
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VK GS+IG++ + ++ I E + D V+VE F+ G E TA VL
Sbjct: 144 VKANTQGSTIGISFVH----QAEQMGAAIEESLKYDQDVLVEKFIS-GMEVTASVLG--- 195
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
+ PV LP +++ +++Y+ KY P + PPR P N I+
Sbjct: 196 --NQDPVA-LPL---------IEITSVTGVYDYQAKYTPGMS-DHIIPPRLPEETQNKIK 242
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFS-SSETKYGSTEWGTILFTDINLISGME 428
+ A FQ LG R+D F+ + V++ T G T T LF D +GME
Sbjct: 243 QLAVKAFQVLGCRGLGRVD--FMVQGSEVYALEVNTLPGMT--ATSLFPDAARYAGME 296
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 130/330 (39%), Gaps = 100/330 (30%)
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
GFDIA+++ I+LA F+A+HG GEDGT+Q LLE +PYTG GV+
Sbjct: 42 VGFDIAEQIKQHQ-----IELA-------FLALHGKYGEDGTIQGLLELLDIPYTGSGVL 89
Query: 670 ASKTCMDKVATS---------------LALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 714
AS ++K+ T + N +++LG +++ ++ DL+ P V
Sbjct: 90 ASAIAINKITTKKLFKLEGIPTPDFTVITRNEVSNLG---LDQACKKALDLVGLPAV--- 143
Query: 715 HELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMI 774
VK G + G++ + AE + A+EE L
Sbjct: 144 -------------VKANTQGSTIGISFVHQAEQMGA---AIEESL--------------- 172
Query: 775 EMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 834
+ D L+ K S +E+T V+G +
Sbjct: 173 ----------------------------KYDQDVLVEKFIS-GMEVTASVLGNQDPVA-- 201
Query: 835 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFS 894
+P + + + + K+ G ++ PP + E +K KQ L G
Sbjct: 202 LPLIEITSVTGVYDYQAKYTPGMSDHIIPPR---LPEETQNKIKQLAVKAFQVLGCRGLG 258
Query: 895 RIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
R+D V EV +EVNT+PGMT +++
Sbjct: 259 RVDFMVQ--GSEVYALEVNTLPGMTATSLF 286
>gi|226310174|ref|YP_002770068.1| ligase [Brevibacillus brevis NBRC 100599]
gi|226093122|dbj|BAH41564.1| ligase [Brevibacillus brevis NBRC 100599]
Length = 350
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 166/387 (42%), Gaps = 55/387 (14%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR-------NLNAYAISS 128
+ L V ++ GG S+E +SL S SVL+ + + V I R N +I +
Sbjct: 2 KKLTVAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIRN 61
Query: 129 AQVYSNTPADFDFKLESLAQGFGSLS-EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+ + F L Q G ++ E VD+VFP +HG+ GEDG +Q +LE
Sbjct: 62 DSWHQSEKCVPAF-LSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGLLEL 120
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
+PFVG + + DK D + +++ I P + + ++L+ V +P
Sbjct: 121 AGIPFVGCHTLSSAICMDK-DIAHTLAEGSGIKTPRSV---AVYPNTDLAT--VQAATEP 174
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ VKP +AGSSIG+T AY + + + + DD+VV+E +
Sbjct: 175 LGFPLYVKPAKAGSSIGITKAYSLSELFFGIENALQH--DDKVVIEENI----------- 221
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY-LPTQQVAYHTPPRFPIV 365
+GF+ VL EV G VD + F+Y KY L T + H P R
Sbjct: 222 ---TGFEVGCAVLGNREV---IVGEVDEIELLQGFFDYTEKYSLETAHI--HVPARIDEE 273
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ + I++ A+ L+Q G FAR+D + P G I+F ++N I
Sbjct: 274 LAHKIKQTATHLYQVFGCRGFARVDMFVTPD-----------------GDIVFNEVNTIP 316
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTII 452
G S G S+ +L T+I
Sbjct: 317 GFTSKSRYPSMLRAAGISYKELLDTLI 343
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 114/293 (38%), Gaps = 84/293 (28%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LLE G+P+ G ++S CMDK +A +LA
Sbjct: 100 VFPILHGKNGEDGTVQGLLELAGIPFVGCHTLSSAICMDKDIAHTLAE-----------G 148
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLCCAEDLTV 750
++ + P D+ + +Q T L VKPA+ G S G+
Sbjct: 149 SGIKTPRSVAVYPNTDL-----ATVQAATEPLGFPLYVKPAKAGSSIGI----------- 192
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810
++A+ + E+ F ++ ++ D+++
Sbjct: 193 -----------------TKAYSL-------------------SELFFGIENALQHDDKVV 216
Query: 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP----PA 866
+ N E+ V+G V V E +I L+ F +L PA
Sbjct: 217 IEENITGFEVGCAVLGN--------REVIVGEVDEIELLQGFFDYTEKYSLETAHIHVPA 268
Query: 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
I E K KQ + GF+R+D FV D G+++ EVNT+PG T
Sbjct: 269 RI-DEELAHKIKQTATHLYQVFGCRGFARVDMFVTPD-GDIVFNEVNTIPGFT 319
>gi|421724277|ref|ZP_16163506.1| D-alanyl-alanine synthetase A [Klebsiella oxytoca M5al]
gi|410374941|gb|EKP29593.1| D-alanyl-alanine synthetase A [Klebsiella oxytoca M5al]
Length = 365
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 175/399 (43%), Gaps = 67/399 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GQWHINDASNYLLNPQ 62
Query: 138 D--------FDFKLESL----AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
D D L + AQ + ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSDITLAQIPGREAQQLIN-ADSGQPLAA-IDVIFPIVHGTLGEDGSLQGML 120
Query: 186 EKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
N+PFVG+ GS AC DK D + + + +++ F+ + N +++S V
Sbjct: 121 RMANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRNQMSFAEVQ 175
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ + ++A + E D +VVVE ++ G E
Sbjct: 176 AKL---GLPLFVKPANQGSSVGVS-KVNSEEQYQQAVALAFE-FDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ Q P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDQGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL-FT 419
V + IR+ A +Q LG AR+D VF ++E E T+ FT
Sbjct: 273 AIDSDVNDKIRQIAVRAYQTLGCSGMARVD---------VFLTAENDVVINEINTLPGFT 323
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+I++ + Q S G +++++ +I A R
Sbjct: 324 NISMYPKLWQAS---------GLDYTSLISRLIELALER 353
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 112/283 (39%), Gaps = 60/283 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLSIAPFI 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R + + + E+ +KL L VKPA G S GV+++ E Y +A+
Sbjct: 160 TLTRANRNQMS------FAEVQAKLGL-PLFVKPANQGSSVGVSKVNSEEQ---YQQAVA 209
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
L F E D + Q KG
Sbjct: 210 ---------------------------LAF----EFDHKVVVEQGI---------KGR-- 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI V+G S + + + + + + K+ G + P A + ++ DK
Sbjct: 228 --EIECAVLGNDNPQASTCGEIVL--NSEFYAYDTKYIDDQGAKVVVPAA--IDSDVNDK 281
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+Q L G +R+D F+ +N +V+I E+NT+PG T
Sbjct: 282 IRQIAVRAYQTLGCSGMARVDVFLTAEN-DVVINEINTLPGFT 323
>gi|384228220|ref|YP_005619955.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
gi|345539153|gb|AEO08020.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
Length = 309
Score = 93.2 bits (230), Expect = 6e-16, Method: Composition-based stats.
Identities = 97/378 (25%), Positives = 156/378 (41%), Gaps = 83/378 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG S+ER IS+ S ++LD + + LNAY I +
Sbjct: 4 KIAVLLGGTSSERNISIKSGYAILDSL-----------LKSKLNAYPIDTR--------- 43
Query: 139 FDFKLESLAQ-GFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D+ + L Q GF + +HG+ GEDG IQ L+ N+ + G+G
Sbjct: 44 -DYSMTELKQNGFNQ--------------AYIALHGKGGEDGSIQGFLQYLNISYTGSGI 88
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A + DK+ L +G +T P L + +S S + + +++KP
Sbjct: 89 MASSISIDKFRTKLLWKSRGLLTAPDIYLSKKKNIDSIYST--IEKQTLKLGFPIIIKPN 146
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILE--GIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
+ GSSIG+T VI S+ K I + DD +++E F++ G E+T +L G
Sbjct: 147 KHGSSIGIT----VISSVTKLYEAINKTFNYDDNILIEKFIK-GKEYTVSIL----GQTV 197
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL-PTQQVAYHTPPRFPIVVINSIREGA 374
P+V + T K+A ++Y KY+ P+ Q Y P + ++E A
Sbjct: 198 LPIVHIST--------------KNAFYDYNAKYVCPSTQ--YVCPSGLNPIQEKKLKEIA 241
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
L + L C RID F+ + F W +IN I GM S
Sbjct: 242 LLAWNTLECCGCGRID--FILDNKDQF-----------W----LLEINTIPGMTNRSLTP 284
Query: 435 QQASKVGFSHSNILRTII 452
A G S ++ I+
Sbjct: 285 MSAKAAGMSFDELVLLIL 302
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 72/287 (25%), Positives = 118/287 (41%), Gaps = 65/287 (22%)
Query: 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 693
NQA +IA+HG GEDG++Q L+ + YTG G+MAS +DK T L L
Sbjct: 56 NQA--YIALHGKGGEDGSIQGFLQYLNISYTGSGIMASSISIDKFRTKLLWKSRGLLTAP 113
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
I ++ D + + I + T KL + +KP + G S G+ + +T +
Sbjct: 114 DIYLSKKKNIDSIYSTI----EKQTLKLGFPII-IKPNKHGSSIGITVI---SSVTKLYE 165
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
A+ + N ILI E F+ KG
Sbjct: 166 AINKTF------------------NYDDNILI-EKFI---------------------KG 185
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
E TV ++G+ +++P V + K+ + + P + + +
Sbjct: 186 K----EYTVSILGQ-----TVLPIVHISTKNAFYDYNAKYVCPSTQYVCPSGLNPIQEKK 236
Query: 874 LDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L + I L+A N L+ G RID F+ + + ++E+NT+PGMT
Sbjct: 237 L----KEIALLAWNTLECCGCGRID-FILDNKDQFWLLEINTIPGMT 278
>gi|315223279|ref|ZP_07865140.1| D-ala D-ala ligase [Streptococcus anginosus F0211]
gi|315187711|gb|EFU21465.1| D-ala D-ala ligase [Streptococcus anginosus F0211]
Length = 348
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 166/383 (43%), Gaps = 49/383 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S+ P D
Sbjct: 5 QIILLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQ---AGDFIKTQEFSSKPTD 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 62 -DEKLMTNDTVVASQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G ++E ++ N + V KP
Sbjct: 121 SSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEK-------IAAVEANLTYPVFTKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L+ A + + D RV++E A ++VG
Sbjct: 174 SNMGSSVGISKSENQ-DELRSALKLAFK-YDSRVLIE------QGVNAREIEVG------ 219
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LL E E Q +V + A ++Y KY+ ++ P + VI ++R+ A
Sbjct: 220 ---LLGNE-EAQSSLPGEVVKDVAFYDYEAKYI-DNKITMDIPAKLSEDVIATMRQYAEK 274
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F +G +R D ++ T+ G IL ++N + G Q S
Sbjct: 275 AFHAIGGVGLSRCDFFY-----------------TDKGEILLNELNTMPGFTQWSMYPLL 317
Query: 437 ASKVGFSHSNILRTIIGHACSRF 459
+G S+++++ ++ A F
Sbjct: 318 WENMGISYTDLIEKLVLLAQETF 340
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMDKITTKRV---LASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I + LT + KP+ G S G+++ ++L +
Sbjct: 141 PQVPYVAVIEGENIDEKIAAVEANLTY-----PVFTKPSNMGSSVGISKSENQDELRSAL 195
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F K R++ +
Sbjct: 196 K------------------------------LAF-----------------KYDSRVLIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + SL P VK+ E K+ I + P +S +
Sbjct: 209 QGVNAREIEVGLLGNEEAQSSL-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E +A+ G SR D F D GE+L+ E+NT+PG T
Sbjct: 264 VIATMRQYAEKAFHAIGGVGLSRCD-FFYTDKGEILLNELNTMPGFT 309
>gi|167551817|ref|ZP_02345570.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205323388|gb|EDZ11227.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 364
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 161/385 (41%), Gaps = 67/385 (17%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D VF +++ + ++ +
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVD---------VFLTADNE--------VVINE 315
Query: 421 INLISGMEQTSFL--FQQASKVGFS 443
IN + G S QAS++G++
Sbjct: 316 INTLPGFTNISMYPKLWQASRLGYT 340
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|423068087|ref|ZP_17056875.1| D-alanine-D-alanine ligase [Streptococcus intermedius F0395]
gi|355366978|gb|EHG14691.1| D-alanine-D-alanine ligase [Streptococcus intermedius F0395]
Length = 350
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 166/383 (43%), Gaps = 49/383 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S+ PAD
Sbjct: 7 QIILLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQ---AGDFIKTQEFSSKPAD 63
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 64 -DEKLMTNDTVIESQKMKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 122
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G +V E +++ N + V KP
Sbjct: 123 SSSIAMDKITTKRVLASAGIPQVPYVAVVEGEDVEEK-------IAEVEVNLTYPVFTKP 175
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L+ A + + D RV++E A ++VG +
Sbjct: 176 SNMGSSVGISKSENK-DELRSALKLAFK-YDSRVLIE------QGVNAREIEVGLFGNEG 227
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV DV A ++Y KY+ ++ P + VI ++R+ A
Sbjct: 228 AKSSLPGEV------VKDV----AFYDYEAKYI-DNKITMDIPAKLSEDVIATMRDYAEK 276
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F +G +R D ++ T+ G I ++N + G Q S
Sbjct: 277 AFHAIGGVGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMYPLL 319
Query: 437 ASKVGFSHSNILRTIIGHACSRF 459
+G S+++++ ++ A F
Sbjct: 320 WENMGISYTDLIEKLVRLAQEMF 342
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 113/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 86 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSIAMDKITTKRV---LASAGI 142
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + ++ I ++ LT + KP+ G S G+++ ++L +
Sbjct: 143 PQVPYVAVVEGEDVEEKIAEVEVNLTY-----PVFTKPSNMGSSVGISKSENKDELRSAL 197
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F K R++ +
Sbjct: 198 K------------------------------LAF-----------------KYDSRVLIE 210
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG+ G G+ SL P VK+ E K+ I + P +S +
Sbjct: 211 QGVNAREIEVGLFGNEGAKSSL-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 265
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + E +A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 266 VIATMRDYAEKAFHAIGGVGLSRCD-FFYTDKGEIFLNELNTMPGFT 311
>gi|333993408|ref|YP_004526021.1| D-alanine--D-alanine ligase [Treponema azotonutricium ZAS-9]
gi|333735978|gb|AEF81927.1| D-alanine--D-alanine ligase [Treponema azotonutricium ZAS-9]
Length = 365
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 169/400 (42%), Gaps = 62/400 (15%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHI---QGDDLLVRCYYIDRNLNAYAISSAQVY 132
+ + VG++ GG SAE +SL SA++V D + + + +L+ R L A S ++
Sbjct: 2 KKINVGILFGGKSAEHEVSLQSAKNVFDALDREKYNPVLIGIAKDGRWLKGDA-SGFLLH 60
Query: 133 SNTPADFDFKLES-----LAQGFGSLSEFA----EHLAANVDIVFPTIHGRFGEDGGIQE 183
+ P S + + G +S + + A +D+VFP +HG FGEDG +Q
Sbjct: 61 AENPRLIALNHSSDWVALVPESGGKISNLSIGEPQPTAQTIDVVFPILHGPFGEDGTVQG 120
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF--V 241
+L+ N+PFVGTG A DK D + + + + F + E + F +
Sbjct: 121 LLKLANIPFVGTGVLASAVGMDK-DVMKRLFRDAGLPIGKF----KSLKSHEKTPPFKEI 175
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGG 299
T L + +KP GSS+GV+ I + ++ + E D + ++E F+ G
Sbjct: 176 TEAL---GLPIFIKPANMGSSVGVS----KIHNEEEYHAALAEAFKFDTKAILEEFIP-G 227
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
E VL + P LP EV + E ++Y KY+ + P
Sbjct: 228 RELECSVLG-----NEEPEASLPGEV-------ISTHE---FYSYDAKYIDEKGATLEIP 272
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
R P I I+E A F+ L +R+D + P+ G +
Sbjct: 273 ARLPPETIRQIQELAIKAFKALECEGLSRVDFFLKPN-----------------GEAIIN 315
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+IN + G + S + G S+S ++ T+I A RF
Sbjct: 316 EINTMPGFTKISMYPKLWEAGGISYSKLIDTLIQLAIKRF 355
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 108/428 (25%), Positives = 169/428 (39%), Gaps = 111/428 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V ++FGG ++E +VSL S NV+ A + + P L+ + D D+S
Sbjct: 6 VGILFGGKSAEHEVSLQSAKNVF---DALDREKYNPVLIGIA------KDGRWLKGDASG 56
Query: 554 RVVWSL-PYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
++ + P + L H+++ V A+ P+ S+L
Sbjct: 57 FLLHAENPRLIALNHSSDWV------ALVPESGGKISNL--------------------- 89
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
I + P +I+ VF +HG GEDGT+Q LL+ +P+ G GV+AS
Sbjct: 90 SIGEPQPTAQTID-----------VVFPILHGPFGEDGTVQGLLKLANIPFVGTGVLASA 138
Query: 673 TCMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
MDK V L + +G K ++ E KTP + E+T L + +KPA
Sbjct: 139 VGMDKDVMKRLFRDAGLPIGKF---KSLKSHE---KTP---PFKEITEALGL-PIFIKPA 188
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV+++ E+ Y AL E F I E F+
Sbjct: 189 NMGSSVGVSKIHNEEE---YHAALAEAF------KFDTK-------------AILEEFIP 226
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
E+ S GN E + G+ S H + S +
Sbjct: 227 GRELECSVL------------GNE---EPEASLPGEVISTH------------EFYSYDA 259
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ G L P + + E + + ++ AL+ EG SR+D F+ NGE +I E
Sbjct: 260 KYIDEKGATLEIP--ARLPPETIRQIQELAIKAFKALECEGLSRVDFFLK-PNGEAIINE 316
Query: 912 VNTVPGMT 919
+NT+PG T
Sbjct: 317 INTMPGFT 324
>gi|416424639|ref|ZP_11691820.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416430911|ref|ZP_11695255.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416440034|ref|ZP_11700615.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416444608|ref|ZP_11703841.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416453813|ref|ZP_11709887.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416458520|ref|ZP_11713039.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416465557|ref|ZP_11716879.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416476951|ref|ZP_11721295.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416484302|ref|ZP_11724098.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416501622|ref|ZP_11732212.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416510541|ref|ZP_11737139.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416520535|ref|ZP_11740247.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416542274|ref|ZP_11751444.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416557216|ref|ZP_11759345.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416576622|ref|ZP_11769204.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416583786|ref|ZP_11773542.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416595135|ref|ZP_11780949.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416596541|ref|ZP_11781433.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416605689|ref|ZP_11787121.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416614786|ref|ZP_11793038.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416620971|ref|ZP_11796074.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416634111|ref|ZP_11802392.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416639826|ref|ZP_11804740.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416648435|ref|ZP_11809080.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416661578|ref|ZP_11815570.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416670988|ref|ZP_11820477.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416673651|ref|ZP_11820974.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416700220|ref|ZP_11829086.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416706753|ref|ZP_11831942.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416713167|ref|ZP_11836809.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416719502|ref|ZP_11841358.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416723639|ref|ZP_11844305.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416734220|ref|ZP_11850875.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416740140|ref|ZP_11854228.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416745337|ref|ZP_11857269.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416757106|ref|ZP_11862936.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416764452|ref|ZP_11868056.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416766861|ref|ZP_11869477.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|418485206|ref|ZP_13054190.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418489108|ref|ZP_13056383.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418493222|ref|ZP_13059690.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418498033|ref|ZP_13064448.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418504328|ref|ZP_13070686.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418508040|ref|ZP_13074348.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418525549|ref|ZP_13091529.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|322614661|gb|EFY11590.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620180|gb|EFY17052.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322623474|gb|EFY20313.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629228|gb|EFY26007.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631948|gb|EFY28702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637314|gb|EFY34016.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322642000|gb|EFY38610.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646237|gb|EFY42751.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322652496|gb|EFY48850.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322653341|gb|EFY49674.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660510|gb|EFY56746.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664662|gb|EFY60855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322669285|gb|EFY65435.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670831|gb|EFY66964.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678931|gb|EFY74986.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681959|gb|EFY77984.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685212|gb|EFY81209.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323194440|gb|EFZ79635.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197024|gb|EFZ82166.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323203349|gb|EFZ88374.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323210324|gb|EFZ95216.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323214566|gb|EFZ99317.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223123|gb|EGA07466.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323223963|gb|EGA08257.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230110|gb|EGA14230.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233848|gb|EGA17937.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323238458|gb|EGA22516.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244146|gb|EGA28155.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246306|gb|EGA30289.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251932|gb|EGA35795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323257929|gb|EGA41608.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261058|gb|EGA44650.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265012|gb|EGA48511.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272575|gb|EGA55982.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|363549210|gb|EHL33567.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363554524|gb|EHL38759.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363578730|gb|EHL62532.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|366056184|gb|EHN20510.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366065397|gb|EHN29587.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366069014|gb|EHN33144.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366071170|gb|EHN35270.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366073810|gb|EHN37874.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366080346|gb|EHN44318.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366829429|gb|EHN56305.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372206318|gb|EHP19822.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 364
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 168/398 (42%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK D + + + + + SF+ + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDK-DVAKRLLRDAGLNIASFITL-TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIASF 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 159 ITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|323701728|ref|ZP_08113399.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
gi|323533264|gb|EGB23132.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
Length = 311
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 156/359 (43%), Gaps = 73/359 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L+VG++CGG SAER +SL S +V L+ C Y ++
Sbjct: 3 LKVGVLCGGRSAEREVSLRSGEAVYQA------LLNCGYDVVKIDV-------------- 42
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
GF + +H +++ F +HG++GEDG IQ +LE ++P+ G+G
Sbjct: 43 -----------GFDIAEQIKQH---QIELAFLALHGKYGEDGTIQGLLELLDIPYTGSGV 88
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN----KLDPNSGKVV 253
A A +K +G I P F + + +E+SN + + LD V
Sbjct: 89 LASAIAINKITTKKLFKLEG-IPTPDFTV----ITRNEVSNLGLDHACKKALDLVGLPAV 143
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VK GS+IG++ + ++ I E + D V+VE F+ G E TA VL
Sbjct: 144 VKANTQGSTIGISFVH----QAEQMGAAIEESLKYDQDVLVEKFIS-GMEVTASVLG--- 195
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH-TPPRFPIVVINSI 370
+ PV LP +++ +++Y+ KY P ++ H PPR P N I
Sbjct: 196 --NQDPVA-LPL---------IEITSVTGVYDYQAKYTPG--ISDHIIPPRLPEETQNKI 241
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFS-SSETKYGSTEWGTILFTDINLISGME 428
++ A FQ LG R+D F+ + V++ T G T T LF D +GME
Sbjct: 242 KQLAVKAFQVLGCRGLGRVD--FMVQGSEVYALEVNTLPGMT--ATSLFPDAARYAGME 296
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 129/329 (39%), Gaps = 100/329 (30%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
GFDIA+++ I+LA F+A+HG GEDGT+Q LLE +PYTG GV+A
Sbjct: 43 GFDIAEQIKQHQ-----IELA-------FLALHGKYGEDGTIQGLLELLDIPYTGSGVLA 90
Query: 671 SKTCMDKVATS---------------LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWH 715
S ++K+ T + N +++LG ++ ++ DL+ P V
Sbjct: 91 SAIAINKITTKKLFKLEGIPTPDFTVITRNEVSNLG---LDHACKKALDLVGLPAV---- 143
Query: 716 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIE 775
VK G + G++ + AE + A+EE L
Sbjct: 144 ------------VKANTQGSTIGISFVHQAEQMGA---AIEESL---------------- 172
Query: 776 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835
+ D L+ K S +E+T V+G + +
Sbjct: 173 ---------------------------KYDQDVLVEKFIS-GMEVTASVLGNQDPVA--L 202
Query: 836 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSR 895
P + + + + K+ G ++ PP + E +K KQ L G R
Sbjct: 203 PLIEITSVTGVYDYQAKYTPGISDHIIPPR---LPEETQNKIKQLAVKAFQVLGCRGLGR 259
Query: 896 IDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+D V EV +EVNT+PGMT +++
Sbjct: 260 VDFMVQ--GSEVYALEVNTLPGMTATSLF 286
>gi|433774509|ref|YP_007304976.1| D-alanine--D-alanine ligase [Mesorhizobium australicum WSM2073]
gi|433666524|gb|AGB45600.1| D-alanine--D-alanine ligase [Mesorhizobium australicum WSM2073]
Length = 359
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 158/404 (39%), Gaps = 76/404 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RV ++ GG SAE +S SA +VL I R Y + AIS + PA
Sbjct: 5 IRVAILYGGRSAEHDVSRLSAANVLKAID------RTRY---EVVPIAISREGRWLLQPA 55
Query: 138 DFDFKLESLAQGFGS-LSEFAEHLA---------------------ANVDIVFPTIHGRF 175
E++ +G G+ +S+ +A A VD+VFP +HG F
Sbjct: 56 S-----EAIGEGAGAPVSQDGMEIALLPGGKGRLISASPMGTRADLAPVDVVFPVLHGPF 110
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE-S 234
GEDG +Q E +V +VG+G A A DK A M G S + ++V
Sbjct: 111 GEDGSVQGYAEVADVAYVGSGILASAAAMDKDVAKRLMQGAGLAVARSVTVHRNDVGSFQ 170
Query: 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVEL 294
E++ KP R GSS GV+ D +A D + ++E
Sbjct: 171 EIAGALGL--------PFFAKPARQGSSFGVSKVNDR-DGFDQAVETAFR-YDGKALIEE 220
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
F+E G E VL G + + G + K + Y KYL
Sbjct: 221 FVE-GREIECSVLQRADG-----------SLTVSLPGEIIPAGKHGFYTYEAKYLDADGA 268
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P P VI+ RE A F+ LG AR+D +FL + G
Sbjct: 269 VVKVPADVPAAVIDRAREMAGQAFKALGCEAMARVD-FFLRAD----------------G 311
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++L ++N + G S + + +G +S ++ +I HA +R
Sbjct: 312 SLLVNEVNTLPGFTDISMYAKALAAIGIGYSEVIDILIEHALAR 355
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 111/294 (37%), Gaps = 80/294 (27%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG++Q E V Y G G++AS MDK +A + G+
Sbjct: 101 VVFPVLHGPFGEDGSVQGYAEVADVAYVGSGILASAAAMDK---DVAKRLMQGAGLAVAR 157
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ D V + E+ L KPAR G S GV+++ D + +A+E
Sbjct: 158 SVTVHRND------VGSFQEIAGALGLPFFA-KPARQGSSFGVSKV---NDRDGFDQAVE 207
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
R G + E FVE EI
Sbjct: 208 TAF---------RYDGK----------ALIEEFVEGREI--------------------- 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDIL--------SLEEKFQGGTGINLTPP---P 865
+C + S+TV G+I+ + E K+ G + P P
Sbjct: 228 ----------ECSVLQRADGSLTVSLPGEIIPAGKHGFYTYEAKYLDADGAVVKVPADVP 277
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
A++ +D+ ++ AL E +R+D F+ D G +L+ EVNT+PG T
Sbjct: 278 AAV-----IDRAREMAGQAFKALGCEAMARVDFFLRAD-GSLLVNEVNTLPGFT 325
>gi|395228160|ref|ZP_10406484.1| D-alanine-D-alanine ligase A [Citrobacter sp. A1]
gi|424730657|ref|ZP_18159252.1| d-alanine-d-alanine ligase a [Citrobacter sp. L17]
gi|394718282|gb|EJF23919.1| D-alanine-D-alanine ligase A [Citrobacter sp. A1]
gi|422894850|gb|EKU34657.1| d-alanine-d-alanine ligase a [Citrobacter sp. L17]
Length = 370
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 172/398 (43%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y S+
Sbjct: 10 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GQWHVSDASNYLLNSD 68
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHL--AAN------VDIVFPTIHGRFGEDGGIQEV 184
PA + SLAQ G + A L A N VD++FP +HG GEDG +Q +
Sbjct: 69 DPAHIALRPSETSLAQVPG---KQAHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 125
Query: 185 LEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
L N+PFVG+ GS AC DK D + + + + + F+ + N + +S V
Sbjct: 126 LRVANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFITL-TRANRNSISFSEV 180
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGS 300
++L + VKP GSS+GV+ V + + + L D +VVVE ++ G
Sbjct: 181 ESRL---GLPLFVKPANQGSSVGVS---KVTSEAQYDQAVALAFEFDHKVVVEQGIK-GR 233
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL G D HP E+ L + Y KY+ P
Sbjct: 234 EIECAVL----GND-HPQASTCGEIVLNSD----------FYAYDTKYIDDNGATVVVPA 278
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IRE A +Q LG AR+D VF ++E ++ +
Sbjct: 279 AIAPEINDKIREIAIQAYQTLGCAGMARVD---------VFLTAEN--------NVVINE 321
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S + G +++++ +I A R
Sbjct: 322 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 359
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 108 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFIT 166
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R + + + E+ S+L L VKPA G S GV+++
Sbjct: 167 LTRANRNSIS------FSEVESRLGLP-LFVKPANQGSSVGVSKV 204
>gi|357638875|ref|ZP_09136748.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
urinalis 2285-97]
gi|418417499|ref|ZP_12990694.1| D-alanine-D-alanine ligase [Streptococcus urinalis FB127-CNA-2]
gi|357587329|gb|EHJ56737.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
urinalis 2285-97]
gi|410871418|gb|EKS19366.1| D-alanine-D-alanine ligase [Streptococcus urinalis FB127-CNA-2]
Length = 348
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 156/336 (46%), Gaps = 36/336 (10%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ +I ++ Q +S TP+D +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDHFYVKTVFISKDGE---FIKTQEFSKTPSDSEK 64
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+ + + L + A + IVFP +HG GEDG IQ LE +P++GT +
Sbjct: 65 LMTNESIDRSHLIK-ASDIYEKDAIVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSFL-LQGSEVNE--SELSNWFVTNKLDPNSGKVVVKPTR 258
+ DK +S G V + L+G ++ + S++ V V VKP
Sbjct: 124 VSMDKITTKYILSTVGIPQVDYIVYLEGDDILQVISQVEEKLVY--------PVFVKPAN 175
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ A LK A + L+ D R+++E +G S A ++VG
Sbjct: 176 MGSSVGISKATND-KELKDAIHLALK-YDHRILIE---QGVS---AREIEVG-------- 219
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+L E++ G V V+E D ++Y KY+ Q+ P V+ +R A F
Sbjct: 220 ILGNHEIKTTLPGEV-VKEVD-FYDYDAKYIDN-QITMAIPAHISEDVMTKMRNYAQKAF 276
Query: 379 QRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
+ LG C +R D +FL + VF + T G T+W
Sbjct: 277 KALGCCGLSRCD-FFLTNDGQVFLNELNTMPGFTQW 311
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 118/287 (41%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L+ +G+
Sbjct: 84 EKDAIVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNILSSSVSMDKITTKYI---LSTVGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
++ V + D I+ + ++ KL + VKPA G S G+++ ++L
Sbjct: 141 PQVDYIVYLEGD----DILQVISQVEEKL-VYPVFVKPANMGSSVGISKATNDKELK--- 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A+ L K R++ +
Sbjct: 193 DAIHLAL--------------------------------------------KYDHRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + +P VKE D + K+ I + P +S +
Sbjct: 209 QGVSAREIEVGILGN-HEIKTTLPGEVVKEV-DFYDYDAKYIDNQ-ITMAIPAH--ISED 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ K + + AL G SR D F+ D G+V + E+NT+PG T
Sbjct: 264 VMTKMRNYAQKAFKALGCCGLSRCDFFLTND-GQVFLNELNTMPGFT 309
>gi|436587607|ref|ZP_20511859.1| D-alanyl-alanine synthetase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434980842|gb|ELL72731.1| D-alanyl-alanine synthetase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
Length = 390
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 30 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 88
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 89 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 144
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 145 MLRVANLPFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 202
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 203 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 255
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 256 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 298
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D VF +++ + ++ +
Sbjct: 299 QLPSGVNDKIRAIAIQAYQTLGCAGMARVD---------VFLTADNE--------VVINE 341
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S + G +++++ +I A R
Sbjct: 342 INTLPGFTNISMYPKLWQASGLGYTDLISRLIELALER 379
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 127 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DIAKRLLRDAGLNIAP 183
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 184 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 225
>gi|386853307|ref|YP_006271320.1| D-alanine--D-alanine ligase [Actinoplanes sp. SE50/110]
gi|359840811|gb|AEV89252.1| D-alanine-D-alanine ligase [Actinoplanes sp. SE50/110]
Length = 320
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 149/382 (39%), Gaps = 72/382 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRV ++ GG S ER +SL S R VLD + R I+ L+
Sbjct: 7 LRVLVLAGGLSYERDVSLRSGRRVLDAL-------RSRGIEAELH--------------- 44
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D L Q A D V +HG GEDG ++ VL+ VP+VG +
Sbjct: 45 DADVSLLPALQ------------ADPPDAVVIALHGATGEDGSLRGVLDLCAVPYVGADA 92
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
R R A+DK A + + G T P ++ + SEL V +++ G ++VKP
Sbjct: 93 RTARLAWDKPSAKARLRESGIPT-PDWVALPHD-RFSELGAVAVLDRIVSRLGLPLMVKP 150
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GS +G V D G D +VE ++ G+ ++D+GSG
Sbjct: 151 AQGGSGLGAAVVRDAADLPAAMVGCF--AYDSTALVEQYVS-GTRLAVSIVDLGSGPRAL 207
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
P+ V++ +D +++Y +Y +H P R V + + E A
Sbjct: 208 PI--------------VEIVPRDGVYDYAARYT-AGLTTWHVPARLSAAVASRVSETALA 252
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
+Q LGL D +RID E G N+ GM +TS L
Sbjct: 253 AYQALGLRDLSRIDVIV-----------------GEDGEAQVLGCNVSPGMTETSLLPLA 295
Query: 437 ASKVGFSHSNILRTIIGHACSR 458
G IL ++ A R
Sbjct: 296 VQADGADLGEILGVLVERAVDR 317
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
V IA+HG GEDG+L+ +L+ VPY G ++ DK + A L + G+ T +
Sbjct: 61 AVVIALHGATGEDGSLRGVLDLCAVPYVGADARTARLAWDKPS---AKARLRESGIPTPD 117
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + V + + S+L L VKPA+ G G A + A DL
Sbjct: 118 WVALPHDRFSELGAVAVLDRIVSRLGLP-LMVKPAQGGSGLGAAVVRDAADL 168
>gi|33355853|gb|AAQ16273.1| D-Ala:D-Ser ligase [Enterococcus faecalis]
gi|77380199|gb|ABA71731.1| VanG [Enterococcus faecalis]
Length = 349
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 164/386 (42%), Gaps = 56/386 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS--SAQVYSNTP 136
++ +I GG S E +SL SA +V ++I + + I R+ Y + ++ +NT
Sbjct: 5 KIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTW 64
Query: 137 ADFDFKL-------ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ L +GF ++ ++ VD+VFP +HG+ GEDG +Q + E
Sbjct: 65 FEDSKNLCPVVVSQNRSVKGFLEIAS-DKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAG 123
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
+P VG + + DK A +S G I+VP + NE N P
Sbjct: 124 IPVVGCDTLSSALCMDKDRAHKLVSLAG-ISVPK-SVTFKRFNEEAAMKEIEANLTYP-- 179
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ +KP RAGSS G+T ++E + +EL E +E IV +
Sbjct: 180 --LFIKPVRAGSSFGITK--------------VIEKQELDAAIELAFEHDTE--VIVEET 221
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY-LPTQQVAYHTPPRFPIVVI 367
+GF+ VL E+ G VD + F+Y KY L + ++ + P R
Sbjct: 222 INGFEVGCAVLGIDEL---IVGRVDEIELSSGFFDYTEKYTLKSSKI--YMPARIDAEAE 276
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
I+E A +++ LG F+R+D ++ PS G I+F ++N I G
Sbjct: 277 KRIQEAAVTIYKALGCSGFSRVDMFYTPS-----------------GEIVFNEVNTIPGF 319
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIG 453
S +G S S +L +IG
Sbjct: 320 TSHSRYPNMMKGIGLSFSQMLDKLIG 345
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGTLQ + E G+P G ++S CMDK + L L +++ K
Sbjct: 101 VFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRA----HKLVSLAGISVPK 156
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
V K + + +I LT L +KP R G S G+ ++ ++L
Sbjct: 157 SVTFKRFNEEAAMKEIEANLTY-----PLFIKPVRAGSSFGITKVIEKQEL 202
>gi|405945042|pdb|4FU0|A Chain A, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
gi|405945043|pdb|4FU0|B Chain B, Crystal Structure Of Vang D-Ala:d-Ser Ligase From
Enterococcus Faecalis
Length = 357
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 164/386 (42%), Gaps = 56/386 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS--SAQVYSNTP 136
++ +I GG S E +SL SA +V ++I + + I R+ Y + ++ +NT
Sbjct: 5 KIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTW 64
Query: 137 ADFDFKL-------ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ L +GF ++ ++ VD+VFP +HG+ GEDG +Q + E
Sbjct: 65 FEDSKNLCPVVVSQNRSVKGFLEIAS-DKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAG 123
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
+P VG + + DK A +S G I+VP + NE N P
Sbjct: 124 IPVVGCDTLSSALCMDKDRAHKLVSLAG-ISVPK-SVTFKRFNEEAAMKEIEANLTYP-- 179
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ +KP RAGSS G+T ++E + +EL E +E IV +
Sbjct: 180 --LFIKPVRAGSSFGITK--------------VIEKQELDAAIELAFEHDTE--VIVEET 221
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY-LPTQQVAYHTPPRFPIVVI 367
+GF+ VL E+ G VD + F+Y KY L + ++ + P R
Sbjct: 222 INGFEVGCAVLGIDEL---IVGRVDEIELSSGFFDYTEKYTLKSSKI--YMPARIDAEAE 276
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
I+E A +++ LG F+R+D ++ PS G I+F ++N I G
Sbjct: 277 KRIQEAAVTIYKALGCSGFSRVDMFYTPS-----------------GEIVFNEVNTIPGF 319
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIG 453
S +G S S +L +IG
Sbjct: 320 TSHSRYPNMMKGIGLSFSQMLDKLIG 345
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGTLQ + E G+P G ++S CMDK + L L +++ K
Sbjct: 101 VFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRA----HKLVSLAGISVPK 156
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
V K + + +I LT L +KP R G S G+ ++ ++L
Sbjct: 157 SVTFKRFNEEAAMKEIEANLTY-----PLFIKPVRAGSSFGITKVIEKQEL 202
>gi|432735908|ref|ZP_19970684.1| D-alanine-D-alanine ligase A [Escherichia coli KTE42]
gi|431286796|gb|ELF77616.1| D-alanine-D-alanine ligase A [Escherichia coli KTE42]
Length = 364
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 166/399 (41%), Gaps = 65/399 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
I++ + Q S G +++++ +I A R+
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALERY 354
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 126/318 (39%), Gaps = 68/318 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
DK + L G +R+D F+ +N EV+I E+NT+PG T + ++ L +
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT--NISMYPKLWQASG 336
Query: 935 MYPHQFFRKVLDLGSERF 952
+ ++++L ER+
Sbjct: 337 LGYTDLITRLIELALERY 354
>gi|422835205|ref|ZP_16883262.1| D-alanine-D-alanine ligase A [Escherichia coli E101]
gi|371613010|gb|EHO01513.1| D-alanine-D-alanine ligase A [Escherichia coli E101]
Length = 364
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 166/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 NPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L +D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFELDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------TSDFYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----ELDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|256381067|ref|YP_003104727.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
gi|255925370|gb|ACU40881.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
Length = 314
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 150/379 (39%), Gaps = 70/379 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S ER +SL S R + ++ L+V + D L
Sbjct: 6 VAVLSGGLSHEREVSLRSGRRLTAALRSAGLVVEEWDADGQL------------------ 47
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
LS EH D V +HG GE+G +Q +LE VPFVG SRA
Sbjct: 48 -------------LSRLKEH---RPDAVVVALHGGEGENGSVQTILELAGVPFVGADSRA 91
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
CR+A+DK A E+S+ G T +L + E + + + +D +++KP +
Sbjct: 92 CRRAWDKPTAKGELSRAGLATPEWAVLPHATFRELG-ARPVLDSMIDRLGLPLMLKPAQG 150
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GS++G V D G + G D V+ E F E + + V G D P
Sbjct: 151 GSALGAQVVRDAADLPSAMVGCLAYG--DTVLAERF----VEGVEVAVAVVDGPDG-PHA 203
Query: 320 LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
L P V++ + +++Y +Y +H P R ++ E A +
Sbjct: 204 LPP----------VEIVPESGVYDYTSRYT-AGLTDFHAPARLDEATAKAVGELAVSAHR 252
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
LGL D +R D P GT+ F ++N+ G+ +TS L
Sbjct: 253 LLGLRDVSRTDAIVEPD-----------------GTVHFLEVNVSPGLTETSTLPMAVEA 295
Query: 440 VGFSHSNILRTIIGHACSR 458
G S I +I A SR
Sbjct: 296 AGTSLGEIYAALIERAVSR 314
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L + V +A+HGG GE+G++Q++LE GVP+ G A + DK A L+
Sbjct: 50 RLKEHRPDAVVVALHGGEGENGSVQTILELAGVPFVGADSRACRRAWDK---PTAKGELS 106
Query: 689 DLGVLTINKDVRRK---EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745
G+ T V +L P++D + +L L +KPA+ G + G + A
Sbjct: 107 RAGLATPEWAVLPHATFRELGARPVLD---SMIDRLGLP-LMLKPAQGGSALGAQVVRDA 162
Query: 746 EDLTVYVKALEECL 759
DL A+ CL
Sbjct: 163 ADLP---SAMVGCL 173
>gi|339998363|ref|YP_004729246.1| D-alanine--D-alanine ligase [Salmonella bongori NCTC 12419]
gi|339511724|emb|CCC29433.1| D-alanine:D-alanine ligase A [Salmonella bongori NCTC 12419]
Length = 364
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LR+G++ GG SAE +SL SA+++++ I V ID+ + ++ A+ Y ++
Sbjct: 4 LRIGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSEMSLAQVPGK----HEHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE + G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYHQAVALAFEFDHKVVVEQGI-AGREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDRPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G S+++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLSYTDLISRLIELALER 353
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|26991036|ref|NP_746461.1| D-alanine--D-alanine ligase [Pseudomonas putida KT2440]
gi|39931111|sp|Q88EV6.1|DDLA_PSEPK RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|24986067|gb|AAN69925.1|AE016631_4 D-alanine--D-alanine ligase A [Pseudomonas putida KT2440]
Length = 352
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 152/395 (38%), Gaps = 72/395 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ L+ GG S+E ++L SA ++ + V C IDR N Y P F
Sbjct: 6 IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWR-------YQGEPCQF 58
Query: 140 DFKLE------SLAQGFGSLSEFAEH---LAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
++ S+ G SLS + + +D++FP +HGR+GEDG IQ + +
Sbjct: 59 PGAVDRSAPLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGL 118
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP--- 247
P VG+G A DK + G + VP W N + P
Sbjct: 119 PCVGSGVLGSAMAMDKDVTKRMVQSAGLVVVP----------------WLAMNSMRPWEE 162
Query: 248 -----NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
S + VKP +GSSIGV+ ++ E D +V+VE + G E
Sbjct: 163 LVECLGSSTLFVKPATSGSSIGVSRVSNALEYAAAFAIAARE--DTKVLVEAAV-CGREI 219
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL++ G V G + +E A ++Y+ KY P
Sbjct: 220 ECGVLELEEGLMASVV------------GEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLL 267
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P ++ I+ + F+ L L +AR+D +FL TE G I+ +IN
Sbjct: 268 PPDIVARIQALSVQAFRCLELKGYARVD-FFL----------------TEEGEIILNEIN 310
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
+ G S + G+ ++ ++ + S
Sbjct: 311 TLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLS 345
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F A+HG GEDGT+Q L G+P G GV+ S MDK T + + V +
Sbjct: 95 LFPALHGRWGEDGTIQGLAAMCGLPCVGSGVLGSAMAMDKDVTKRMVQSAGLVVVPWLAM 154
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+ R W EL L TL VKPA G S GV+R+
Sbjct: 155 NSMRP-----------WEELVECLGSSTLFVKPATSGSSIGVSRV 188
Score = 40.4 bits (93), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 819 EITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGG--TGINLTP--PPASIMSTEA 873
EI GV+ + G M S++ + KE + K+ TG+ + PP + +A
Sbjct: 218 EIECGVLELEEGLMASVVGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQA 277
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
L R L+L+G++R+D F+ + GE+++ E+NT+PG T ++
Sbjct: 278 LSVQAFR------CLELKGYARVDFFLT-EEGEIILNEINTLPGFTSAS----------- 319
Query: 934 PMYPHQF 940
MYP F
Sbjct: 320 -MYPKMF 325
>gi|119961736|ref|YP_948207.1| D-alanyl-alanine synthetase A [Arthrobacter aurescens TC1]
gi|403527681|ref|YP_006662568.1| D-alanine--D-alanine ligase [Arthrobacter sp. Rue61a]
gi|190359109|sp|A1R7J5.1|DDL_ARTAT RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|119948595|gb|ABM07506.1| D-alanine--D-alanine ligase [Arthrobacter aurescens TC1]
gi|403230108|gb|AFR29530.1| D-alanine--D-alanine ligase Ddl [Arthrobacter sp. Rue61a]
Length = 378
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 168/398 (42%), Gaps = 48/398 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAISSA 129
RV ++ GG S+E +S +A V+ I + V I + + + +++SSA
Sbjct: 14 RVAILFGGRSSEHAVSCVTAAGVMGAIDKNKYEVIPIGIAKSGQWVLASGDTSEWSLSSA 73
Query: 130 QVYSNTPADFDFKLESLA---QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
+ P+ L + Q + +VD+VFP +HG +GEDG IQ +LE
Sbjct: 74 ALPEVAPSGRTVTLAEVGGEHQLIVTEPNAVPQELGSVDVVFPLLHGPWGEDGTIQGLLE 133
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
+ +VG G A DK+ + G P + E + + V ++D
Sbjct: 134 LSDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYVAVTDREWSTDAEA---VRKRVD 190
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTA 304
V VKP RAGSS+G++ +DS++ I E D ++V+E + G E
Sbjct: 191 KLGFPVFVKPARAGSSMGIS----KVDSMEGLDAAIDEARRHDLKLVIEAGIV-GREIEC 245
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G G D P +P E+ +V V E +++ KY+ A P P
Sbjct: 246 AVLQ-GRGTDA-PRTSMPGEI------AVAVGEHQ-FYDFAAKYVEDGAAALSCPADMPD 296
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
I +RE A++ F +G +R+D ++ P+ G ++ +IN +
Sbjct: 297 EAIARVRELAAVAFDAVGAEGLSRVDFFYTPA-----------------GELIINEINTM 339
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
G S Q + G ++ +++ +I A +R L
Sbjct: 340 PGFTPKSMYPQMWAASGLAYGDLIDELIHLALTRKTGL 377
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 125/322 (38%), Gaps = 86/322 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-----VATSLALN-----HL 687
VF +HG GEDGT+Q LLE Y G GV+AS MDK V S L+ +
Sbjct: 114 VFPLLHGPWGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYVAV 173
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D T + VR++ D L P+ VKPAR G S G++++ E
Sbjct: 174 TDREWSTDAEAVRKRVDKLGFPVF----------------VKPARAGSSMGISKVDSMEG 217
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNA 806
L A++E +R H + L+ E + EI + Q +A
Sbjct: 218 LDA---AIDE----------ARRHDL---------KLVIEAGIVGREIECAVLQGRGTDA 255
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
R G EI V V H K+ L+ P
Sbjct: 256 PRTSMPG-----EIAVAV-----GEHQF------------YDFAAKYVEDGAAALSCP-- 291
Query: 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926
+ M EA+ + ++ + +A+ EG SR+D F GE++I E+NT+PG TP +
Sbjct: 292 ADMPDEAIARVRELAAVAFDAVGAEGLSRVD-FFYTPAGELIINEINTMPGFTPKS---- 346
Query: 927 QALSEQPPMYPHQFFRKVLDLG 948
MYP + L G
Sbjct: 347 --------MYPQMWAASGLAYG 360
>gi|384564880|ref|ZP_10011984.1| D-alanine--D-alanine ligase [Saccharomonospora glauca K62]
gi|384520734|gb|EIE97929.1| D-alanine--D-alanine ligase [Saccharomonospora glauca K62]
Length = 365
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 170/402 (42%), Gaps = 56/402 (13%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS-- 133
R RV ++ GG S E IS SA S+L ++ D V + R A+ + + +
Sbjct: 4 RKTRVAVVFGGRSTEHTISCVSAGSILANLDQDRFEVVPVGVTRT-GAWVLGTTDYETLR 62
Query: 134 ----NTPADFDFKLESLAQ-----GFGSL--SEFAEHLAANVDIVFPTIHGRFGEDGGIQ 182
PA D LA G SL + AE L+A VD+VFP +HG FGEDG IQ
Sbjct: 63 IRGRQLPAVEDGAALVLAGDPTTGGLLSLEPGQHAEVLSA-VDVVFPVLHGAFGEDGTIQ 121
Query: 183 EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF-ITVPSFLLQGSEVNESELSNWFV 241
+LE ++P+VG G A A DK A ++ +G + + + +G +E
Sbjct: 122 GLLELADLPYVGAGVFASAAAMDKEYAKKLLAAEGLEVGRYAVVRRGQRTLPAEERERL- 180
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL-EGIDDRVVVELFLEGGS 300
V VKP RAGSSIG++ V D + + I L D +V+VE G
Sbjct: 181 -------GLPVFVKPARAGSSIGISR---VTDWSQLDEAIALARETDPKVLVEAETP-GR 229
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL+ G LP E+ + E+DA +++ KYL + P
Sbjct: 230 EVECGVLEFPDG---RVEASLPAEIRVLSD------EEDAWYDFETKYL-GEDAELDIPA 279
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ V +RE A F L AR+D +F+ E GT+ +
Sbjct: 280 KLDDTVTERLREAAVRAFGALDCQGLARVD-FFV----------------GEDGTLTVNE 322
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+N + G TS + G +S +L T+I A +R L
Sbjct: 323 VNTMPGFTATSAYPKMWEVTGIDYSTLLTTLIETAIARGTGL 364
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 115/291 (39%), Gaps = 69/291 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LLE +PY G GV AS MDK A L ++G +
Sbjct: 106 VFPVLHGAFGEDGTIQGLLELADLPYVGAGVFASAAAMDKEYAKKLLAAEGLEVGRYAV- 164
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
VRR + L E +L VKPAR G S G++R+
Sbjct: 165 --VRRGQRTLPA-------EERERLGLPVF-VKPARAGSSIGISRV-------------- 200
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD-EILFSSQSTNKNADRLMWKGNS 815
+S+ I + ETD ++L +++ +
Sbjct: 201 --------TDWSQLDEAIALAR------------ETDPKVLVEAETPGR----------- 229
Query: 816 RWVEITVGVIG-KCGSMHSLMPS---VTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
E+ GV+ G + + +P+ V E E K+ G P T
Sbjct: 230 ---EVECGVLEFPDGRVEASLPAEIRVLSDEEDAWYDFETKYLGEDAELDIPAKLDDTVT 286
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
E L + R AL +G +R+D FV ++G + + EVNT+PG T ++
Sbjct: 287 ERLREAAVR---AFGALDCQGLARVDFFVG-EDGTLTVNEVNTMPGFTATS 333
>gi|291085781|ref|ZP_06354046.2| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220]
gi|291069833|gb|EFE07942.1| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220]
Length = 375
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 167/400 (41%), Gaps = 69/400 (17%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y S+
Sbjct: 15 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GQWHVSDASNYLLNSD 73
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 74 DPAHIALRPSATSLAQVPGK----QEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 129
Query: 184 VLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
+L N+PFVG+ GS AC DK D + + + + + F+ + N + +S
Sbjct: 130 MLRVANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFITL-TRANRNNISFAE 184
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
V ++L + VKP GSS+GV+ +A + E D +VVVE ++ G
Sbjct: 185 VESRL---GLPLFVKPANQGSSVGVSKVTSEA-QYNQAVALAFE-FDHKVVVEQGIK-GR 238
Query: 301 EFTAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 358
E VL D C +VL + Y KY+
Sbjct: 239 EIECAVLGNDRPQASTCGEIVL-----------------NSDFYAYDTKYIDDNGAKVVV 281
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P + + IRE A +Q LG AR+D VF ++E ++
Sbjct: 282 PAAIAPEINDKIREIAIQAYQTLGCAGMARVD---------VFLTAEND--------VVI 324
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+IN + G S + G +++++ +I A R
Sbjct: 325 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 364
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 112 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFI 170
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R + + + E+ S+L L VKPA G S GV+++
Sbjct: 171 TLTRANRNNIS------FAEVESRLGLP-LFVKPANQGSSVGVSKV 209
>gi|386852269|ref|YP_006270282.1| D-alanyl-alanine synthetase A [Actinoplanes sp. SE50/110]
gi|359839773|gb|AEV88214.1| D-alanyl-alanine synthetase A [Actinoplanes sp. SE50/110]
Length = 367
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 163/412 (39%), Gaps = 75/412 (18%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAI 126
R RV ++ GG S E IS SA ++L + D I R + AI
Sbjct: 5 RKTRVAIVFGGRSTEHAISCVSAGAILGALDPDQYETVPVGITREGRWVLAAGDPAQLAI 64
Query: 127 S------------SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGR 174
+ SA V P + + A G L+E A VD+VFP +HG
Sbjct: 65 AGERLPEITAGSGSAVVLPADPTAAELIVRDPADGVAELAELA-----GVDVVFPVLHGA 119
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNE 233
+GEDG IQ +LE +P+VG A A DK + +G P +L+ G + E
Sbjct: 120 YGEDGTIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLAAAEGIPVGPYAVLRAGMSLTE 179
Query: 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID---SLKKAKGIILEGIDDRV 290
++ + V VKP+RAGSS G+T D ++ KA+ ID +V
Sbjct: 180 ADKERLGL---------PVFVKPSRAGSSTGITKVTDWADLDAAITKAR-----EIDPKV 225
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
+VE + GSE VL+ F P L E+ + + +++ KYL
Sbjct: 226 LVEAAIV-GSEIECGVLE--GEFGGPPQASLLAEIHM---------DGADWYDFATKYLV 273
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
+ Y P P + ++E A F L AR+D +F+
Sbjct: 274 GSR--YTIPAALPHDLTRQVQEYALRTFTALDCAGLARVD-FFV---------------- 314
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
T G + +IN + GM TS Q + G + ++ +I A R L
Sbjct: 315 TAAGEVYLNEINTMPGMTPTSMFPQMWAATGLEYPKVVDRLIRTALRRGTGL 366
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 22/149 (14%)
Query: 615 ADELPMRHSINEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
A EL +R + +LA+ VF +HG GEDGT+Q +LE G+PY G V AS
Sbjct: 88 AAELIVRDPADGVAELAELAGVDVVFPVLHGAYGEDGTIQGMLEMAGIPYVGANVFASAA 147
Query: 674 CMDKVAT-SLALNHLADLGVLTINKD----VRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728
MDK T LA +G + + ++ L P+ V
Sbjct: 148 AMDKEFTKKLAAAEGIPVGPYAVLRAGMSLTEADKERLGLPVF----------------V 191
Query: 729 KPARDGCSTGVARLCCAEDLTVYVKALEE 757
KP+R G STG+ ++ DL + E
Sbjct: 192 KPSRAGSSTGITKVTDWADLDAAITKARE 220
>gi|417331574|ref|ZP_12115771.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
gi|353584979|gb|EHC44945.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Alachua str. R6-377]
Length = 373
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 13 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 71
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 72 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 127
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 128 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 185
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 186 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 238
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 239 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 281
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 282 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 333
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 334 ISMYPKLWQAS---------GLGYTDLISRLIELALER 362
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 110 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 166
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 167 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 208
>gi|452124031|ref|ZP_21936615.1| D-alanine--D-alanine ligase [Bordetella holmesii F627]
gi|452127417|ref|ZP_21939998.1| D-alanine--D-alanine ligase [Bordetella holmesii H558]
gi|451923261|gb|EMD73402.1| D-alanine--D-alanine ligase [Bordetella holmesii F627]
gi|451926697|gb|EMD76827.1| D-alanine--D-alanine ligase [Bordetella holmesii H558]
Length = 317
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 158/382 (41%), Gaps = 80/382 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S V D + R +D +L
Sbjct: 7 KVGVLYGGRSAEREVSLMSGAGVHDAL-------RSAGVDAHL----------------- 42
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD L+ LA E AA D VF +HGR+GEDG IQ LE N+P+ G+G
Sbjct: 43 FDTGLQGLA----------ELQAAGFDRVFIALHGRYGEDGAIQGALELLNIPYTGSGVA 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN-ESELSNWFVTNKLDPNSGKVVVKPT 257
A A DK + G T P+F E++ +++L V ++L +++KP
Sbjct: 93 ASAVAMDKILTKRIWLQHGLPT-PAF----EEIDGQTDLRQ--VPDRLGL---PLILKPP 142
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GS++G+T G D +K+A D+ V+ E F+ G E T VL G G P
Sbjct: 143 HEGSTVGITKVAGYSD-IKQAYASASH-FDEVVLAEQFVR-GRELTVAVLGTGRGARALP 199
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
V +++ D ++Y+ KY T Y P P V + A L
Sbjct: 200 V--------------IEIVAPDGNYDYQNKYF-TDDTKYFCPADLPEGVAADVERIAVLA 244
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
++ LG + R D F+ + W ++N GM S + A
Sbjct: 245 YRVLGCEGWGRAD--FILDDQ-----------NRPW----LLELNTSPGMTSHSLVPMAA 287
Query: 438 SKVGFSHSNILRTIIGHACSRF 459
VG +++++ I+ A +
Sbjct: 288 RAVGLNYADLCVAILAEASCKL 309
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 116/293 (39%), Gaps = 76/293 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH-LADLGVLTI 695
VFIA+HG GEDG +Q LE +PYTG GV AS MDK+ T + L H L I
Sbjct: 61 VFIALHGRYGEDGAIQGALELLNIPYTGSGVAASAVAMDKILTKRIWLQHGLPTPAFEEI 120
Query: 696 N--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT-VYV 752
+ D+R+ D L P++ +KP +G + G+ ++ D+ Y
Sbjct: 121 DGQTDLRQVPDRLGLPLI----------------LKPPHEGSTVGITKVAGYSDIKQAYA 164
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A + F E+++ E FV
Sbjct: 165 SA----------SHFD-------------EVVLAEQFV---------------------- 179
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
R E+TV V+G +L V G+ + F T PA +
Sbjct: 180 ---RGRELTVAVLGTGRGARALPVIEIVAPDGNYDYQNKYFTDDTKYFC---PADLPEGV 233
Query: 873 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
A D +RI ++A L EG+ R D F+ D ++E+NT PGMT +++
Sbjct: 234 AAD--VERIAVLAYRVLGCEGWGRAD-FILDDQNRPWLLELNTSPGMTSHSLV 283
>gi|417516317|ref|ZP_12179247.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|353654597|gb|EHC95825.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
Length = 364
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVTLAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAPF 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 159 ITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|238911487|ref|ZP_04655324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 364
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVTNEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 18/110 (16%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAPF 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 159 ITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKV 198
>gi|419862403|ref|ZP_14385008.1| D-alanyl-alanine synthetase A [Escherichia coli O103:H25 str.
CVM9340]
gi|388345160|gb|EIL10946.1| D-alanyl-alanine synthetase A [Escherichia coli O103:H25 str.
CVM9340]
Length = 364
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 167/395 (42%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSL------SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + SLAQ G ++ A+ L VD++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSATSLAQVPGKHEHQLIDAQNAQPLP-TVDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+ A DK D + + + + + F+ + N +S V +KL
Sbjct: 122 VANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 179 --GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C +VL + Y KY+ P
Sbjct: 233 VLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +++++ +I A R
Sbjct: 328 YPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|418860736|ref|ZP_13415311.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418864220|ref|ZP_13418755.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392826120|gb|EJA81853.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392831481|gb|EJA87114.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
Length = 364
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALKR 353
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|375000108|ref|ZP_09724448.1| D-ala D-ala ligase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|383495189|ref|YP_005395878.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|353074796|gb|EHB40556.1| D-ala D-ala ligase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|380462010|gb|AFD57413.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
Length = 370
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 10 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 68
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 69 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 124
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 125 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 182
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 183 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 235
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 236 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 278
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 279 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 330
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 331 ISMYPKLWQAS---------GLGYTDLISRLIELALER 359
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 107 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 163
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 164 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 205
>gi|433090703|ref|ZP_20277011.1| D-alanine-D-alanine ligase A [Escherichia coli KTE138]
gi|431615155|gb|ELI84285.1| D-alanine-D-alanine ligase A [Escherichia coli KTE138]
Length = 364
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE L+ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGLK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQG---------LKGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|62178991|ref|YP_215408.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161615441|ref|YP_001589406.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|375113302|ref|ZP_09758472.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|417363736|ref|ZP_12136868.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|417405147|ref|ZP_12157753.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|62126624|gb|AAX64327.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161364805|gb|ABX68573.1| hypothetical protein SPAB_03212 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|322713448|gb|EFZ05019.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|353599429|gb|EHC55606.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|353628376|gb|EHC76454.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
Length = 364
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|42518194|ref|NP_964124.1| D-alanyl-alanine synthetase A [Lactobacillus johnsonii NCC 533]
gi|417838531|ref|ZP_12484769.1| D-alanine--D-alanine ligase [Lactobacillus johnsonii pf01]
gi|81832312|sp|Q74LS5.1|DDL_LACJO RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|41582478|gb|AAS08090.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533]
gi|338762074|gb|EGP13343.1| D-alanine--D-alanine ligase [Lactobacillus johnsonii pf01]
Length = 361
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 166/390 (42%), Gaps = 52/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSNTP 136
++VGLI GG S+E +S+ SA ++ + I + V +I + A S +V N
Sbjct: 5 IKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNP- 63
Query: 137 ADFDFKLE-SLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
K+E + ++S E +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 64 -----KMEVANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGK 251
A DK + + G ++ E N+ +L +V ++L
Sbjct: 119 DDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQL---GSD 175
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
+ VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 176 LFVKPSNQGSSVGVS----HVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL--- 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ + KD+ + Y KY P + P ++ +
Sbjct: 229 --GND-KPIVAGVGQI---------INAKDSFYTYENKYDDDSTSTLEIPAKLPEGIVET 276
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A +FQ ARID +E ++ T++N + G
Sbjct: 277 VRKNALKVFQATECSGLARIDSML----------------RSEDNEVVLTEVNALPGFTN 320
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + ++G +++++ +I +A R+
Sbjct: 321 ISMYPKLFEEIGIPYTDLITKLIDYAMERY 350
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 104/464 (22%), Positives = 171/464 (36%), Gaps = 123/464 (26%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+V +IFGG++SE +VS+MS N++ + N +V P + + D + D D+
Sbjct: 6 KVGLIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWITN--------DGYLAD-DAD 55
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR V P +E P + A S++
Sbjct: 56 SRKVLDNP---------------KMEVANPHKVANISNII-------------------- 80
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
EL R I+ F VHG +GEDG LQ L P+ G V+A+
Sbjct: 81 ----ELKDRPEID-----------VFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAA 125
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPA 731
MDK T + LA + + K + K P + + +E + L VKP+
Sbjct: 126 VTMDKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPS 181
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV+ + ++ V AL E F
Sbjct: 182 NQGSSVGVSHVTNEKEYKV---ALAEA------------------------------FKY 208
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
D++L + + GN + + VG I + K+S + E
Sbjct: 209 DDKVLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYEN 253
Query: 852 KFQGGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
K+ + L P P I+ T + K + A + G +RID+ + ++ EV+
Sbjct: 254 KYDDDSTSTLEIPAKLPEGIVETVRKNALK-----VFQATECSGLARIDSMLRSEDNEVV 308
Query: 909 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ EVN +PG T + ++ L E+ + K++D ER+
Sbjct: 309 LTEVNALPGFT--NISMYPKLFEEIGIPYTDLITKLIDYAMERY 350
>gi|224582216|ref|YP_002636014.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224466743|gb|ACN44573.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 370
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 10 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 68
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 69 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 124
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 125 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 182
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 183 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 235
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 236 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 278
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 279 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 330
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 331 ISMYPKLWQAS---------GLGYTDLISRLIELALER 359
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 107 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 163
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 164 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 205
>gi|219684734|ref|ZP_03539677.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
garinii PBr]
gi|219672096|gb|EED29150.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
garinii PBr]
Length = 361
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 167/393 (42%), Gaps = 60/393 (15%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + S+ P D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSV--SDPPKLID 64
Query: 141 FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
+ + + F+ + +D+VFP +HGR GEDG IQ VL+ ++P +G G
Sbjct: 65 IDVLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 124
Query: 201 RQAFDKYDASLEMSKQGFITVP-------SFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
+ +KY L + VP +LL E+ N + V+
Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKR---------NVREALGYPVI 175
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP GSSIG+ VAY S + + I E + D +++E F+E
Sbjct: 176 VKPAVLGSSIGINVAY----SESQIEFFIEEALKYDLTILIEKFIEARE----------- 220
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVIN 368
+C V+ ++++ G + V+ D IF +Y KY +P + ++ P + +
Sbjct: 221 -IECS--VIGNEKIKIFSPGEIVVQ--DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLL 275
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
SI+E A L+++ L L AR+D +F+ + G I +IN I G
Sbjct: 276 SIKEYAFLVYKNLELRGMARVD-FFVEKKS---------------GKIYLNEINTIPGFT 319
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
S + S G ++L +I +A + N
Sbjct: 320 DISMFSKMCSHDGLQFKDLLDNLINYAFQSYNN 352
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 107/285 (37%), Gaps = 57/285 (20%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG GEDG +Q +L+ +P G G++ S +K L L V I
Sbjct: 90 VVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAISSNKYFCKLLLKSFNIPLVPFIG 149
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R+ + LL +I + L + VKPA G S G+ + +++
Sbjct: 150 --FRQHDYLLDKE--EIKRNVREALGYPVI-VKPAVLGSSIGINVAYSESQIEFFIEEAL 204
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ L I + E F+E EI S K ++ G
Sbjct: 205 KYDLTI----------------------LIEKFIEAREIECSVIGNEK--IKIFSPG--- 237
Query: 817 WVEITVG--VIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V + + +S++P G I P + T L
Sbjct: 238 --EIVVQDFIFYDYDAKYSVIP-------------------GNSIIFNIPAQ--LETNQL 274
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K+ L+ L+L G +R+D FV +G++ + E+NT+PG T
Sbjct: 275 LSIKEYAFLVYKNLELRGMARVDFFVEKKSGKIYLNEINTIPGFT 319
>gi|455641865|gb|EMF21036.1| D-alanyl-alanine synthetase A [Citrobacter freundii GTC 09479]
Length = 364
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 172/398 (43%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y S+
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GQWHVSDASNYLLNSD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHL--AAN------VDIVFPTIHGRFGEDGGIQEV 184
PA + SLAQ G + A L A N VD++FP +HG GEDG +Q +
Sbjct: 63 DPAHIALRPSETSLAQVPG---KQAHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119
Query: 185 LEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
L N+PFVG+ GS AC DK D + + + + + F+ + N + +S V
Sbjct: 120 LRVANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFITL-TRANRNSISFSEV 174
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGS 300
++L + VKP GSS+GV+ V + + + L D +VVVE ++ G
Sbjct: 175 ESRL---GLPLFVKPANQGSSVGVS---KVTSEAQYDQAVALAFEFDHKVVVEQGIK-GR 227
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL G D HP E+ L + Y KY+ P
Sbjct: 228 EIECAVL----GND-HPQASTCGEIVLNSD----------FYAYDTKYIDDNGATVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IRE A +Q LG AR+D VF ++E ++ +
Sbjct: 273 AIAPEINDKIREIAIQAYQTLGCAGMARVD---------VFLTAEND--------VVINE 315
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S + G +++++ +I A R
Sbjct: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R + + + E+ S+L L VKPA G S GV+++
Sbjct: 161 LTRANRNSIS------FSEVESRLGLP-LFVKPANQGSSVGVSKV 198
>gi|16759358|ref|NP_454975.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16763760|ref|NP_459375.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29142870|ref|NP_806212.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|167992222|ref|ZP_02573320.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168232345|ref|ZP_02657403.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168237486|ref|ZP_02662544.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168261195|ref|ZP_02683168.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168819018|ref|ZP_02831018.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194446690|ref|YP_002039619.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194472780|ref|ZP_03078764.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194735047|ref|YP_002113409.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197249513|ref|YP_002145360.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|200390819|ref|ZP_03217430.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204926723|ref|ZP_03217925.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|213161233|ref|ZP_03346943.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213427803|ref|ZP_03360553.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582565|ref|ZP_03364391.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213622190|ref|ZP_03374973.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647649|ref|ZP_03377702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289828466|ref|ZP_06546324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|374979937|ref|ZP_09721269.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|378443884|ref|YP_005231516.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378448705|ref|YP_005236064.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378698344|ref|YP_005180301.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378960659|ref|YP_005218145.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|378982983|ref|YP_005246138.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378987781|ref|YP_005250945.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379699595|ref|YP_005241323.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|409248824|ref|YP_006884662.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416526587|ref|ZP_11742492.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416536204|ref|ZP_11748271.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416552428|ref|ZP_11757144.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416568147|ref|ZP_11764586.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|417324403|ref|ZP_12110675.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|417339642|ref|ZP_12121148.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|417346637|ref|ZP_12126430.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417355985|ref|ZP_12131652.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417371241|ref|ZP_12141875.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|417379053|ref|ZP_12147528.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|417450866|ref|ZP_12162969.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|417472817|ref|ZP_12168407.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417525516|ref|ZP_12184459.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|418513796|ref|ZP_13080019.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418793800|ref|ZP_13349526.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418807532|ref|ZP_13363090.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418812070|ref|ZP_13367594.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418815429|ref|ZP_13370930.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418821390|ref|ZP_13376815.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418825762|ref|ZP_13381030.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418831707|ref|ZP_13386657.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418835709|ref|ZP_13390600.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418838693|ref|ZP_13393535.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418844465|ref|ZP_13399257.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418848896|ref|ZP_13403631.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418855759|ref|ZP_13410411.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418869299|ref|ZP_13423735.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|422024513|ref|ZP_16370990.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422029536|ref|ZP_16375792.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427545715|ref|ZP_18926301.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427561841|ref|ZP_18931063.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427580566|ref|ZP_18935888.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427602774|ref|ZP_18940664.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427627350|ref|ZP_18945573.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427650644|ref|ZP_18950329.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427659737|ref|ZP_18955281.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427664854|ref|ZP_18960029.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427697047|ref|ZP_18964951.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|440761903|ref|ZP_20940970.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440768648|ref|ZP_20947615.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440772556|ref|ZP_20951460.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|452121357|ref|YP_007471605.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|60392163|sp|P0A1F0.2|DDLA_SALTY RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|60392164|sp|P0A1F1.2|DDLA_SALTI RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|25293549|pir||AC0549 D-alanine,D-alanine ligase A [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|256032847|pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
gi|256032848|pdb|3I12|B Chain B, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
gi|256032849|pdb|3I12|C Chain C, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
gi|256032850|pdb|3I12|D Chain D, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
gi|153943|gb|AAA27056.1| D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16418883|gb|AAL19334.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16501649|emb|CAD08835.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138502|gb|AAO70072.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|194405353|gb|ACF65575.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194459144|gb|EDX47983.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194710549|gb|ACF89770.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197213216|gb|ACH50613.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197289552|gb|EDY28915.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|199603264|gb|EDZ01810.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204323388|gb|EDZ08583.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205329453|gb|EDZ16217.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205333511|gb|EDZ20275.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205344117|gb|EDZ30881.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205349721|gb|EDZ36352.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|261245663|emb|CBG23459.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267992083|gb|ACY86968.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301156992|emb|CBW16475.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911411|dbj|BAJ35385.1| D-alanine--D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320084652|emb|CBY94443.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321225102|gb|EFX50163.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323128694|gb|ADX16124.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332987328|gb|AEF06311.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|353579080|gb|EHC40730.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353579182|gb|EHC40801.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353597463|gb|EHC54187.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353608658|gb|EHC62189.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|353618574|gb|EHC69213.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353636794|gb|EHC82773.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|353652944|gb|EHC94621.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353669922|gb|EHD06688.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|357960118|gb|EHJ84096.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|363557639|gb|EHL41844.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363564654|gb|EHL48701.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363565310|gb|EHL49346.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363578249|gb|EHL62065.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366080989|gb|EHN44942.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|374354531|gb|AEZ46292.1| D-alanine--D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|392763480|gb|EJA20287.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392776810|gb|EJA33496.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392778795|gb|EJA35466.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392790985|gb|EJA47478.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392791881|gb|EJA48349.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392798604|gb|EJA54875.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392802984|gb|EJA59185.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392811997|gb|EJA67994.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392814519|gb|EJA70470.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392815285|gb|EJA71229.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392820889|gb|EJA76727.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392822243|gb|EJA78055.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392836447|gb|EJA92029.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|414023237|gb|EKT06671.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414023778|gb|EKT07192.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414025254|gb|EKT08584.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414037461|gb|EKT20235.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414038588|gb|EKT21295.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414042317|gb|EKT24855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414051845|gb|EKT33925.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414053325|gb|EKT35331.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414057820|gb|EKT39562.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414061873|gb|EKT43249.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414067430|gb|EKT47790.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|436416807|gb|ELP14709.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436418505|gb|ELP16389.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436424384|gb|ELP22162.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|451910361|gb|AGF82167.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 364
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|375122476|ref|ZP_09767640.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|326626726|gb|EGE33069.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
Length = 370
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 10 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 68
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 69 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 124
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 125 MLRVANLPFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 182
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 183 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 235
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 236 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 278
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 279 QLPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 330
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 331 ISMYPKLWQAS---------GLGYTDLISRLIELALER 359
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 107 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DIAKRLLRDAGLNIAP 163
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 164 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 205
>gi|421451257|ref|ZP_15900623.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|396064012|gb|EJI72400.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
Length = 364
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 EPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QLPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DIAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|423127679|ref|ZP_17115358.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5250]
gi|376394718|gb|EHT07368.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5250]
Length = 365
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 164/373 (43%), Gaps = 50/373 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDNTRFDVVLLGIDKQ-GQWHINDASNYLLNPQ 62
Query: 138 D--------FDFKLESL----AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
D D L + AQ + ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSDITLAQIPGREAQQLIN-ADSGQPLAA-IDVIFPIVHGTLGEDGSLQGML 120
Query: 186 EKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
N+PFVG+ GS AC DK D + + + +++ F+ + N ++S V
Sbjct: 121 RMANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRHQVSFADVQ 175
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ + ++A + E D +VVVE ++ G E
Sbjct: 176 AKL---GLPLFVKPANQGSSVGVSKVNNE-EQYQQAVALAFE-FDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ Q P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDQGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
V + IR+ A +Q LG AR+D + + V + T G T ++
Sbjct: 273 AIDSEVNDKIRQIAVRAYQTLGCSGMARVDVFLTADNDVVINEINTLPGFTNIS--MYPK 330
Query: 421 INLISGMEQTSFL 433
+ SG++ TS +
Sbjct: 331 LWQASGLDYTSLI 343
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 114/291 (39%), Gaps = 76/291 (26%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK +
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDK----------------DVT 144
Query: 697 KDVRRKEDLLKTPIVDIW----HELT-SKLQCKT---LCVKPARDGCSTGVARLCCAEDL 748
K + R L P + + H+++ + +Q K L VKPA G S GV+++ E
Sbjct: 145 KRLLRDAGLSIAPFITLTRANRHQVSFADVQAKLGLPLFVKPANQGSSVGVSKVNNEEQ- 203
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
Y +A+ L F E D + Q
Sbjct: 204 --YQQAVA---------------------------LAF----EFDHKVVVEQGI------ 224
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
KG EI V+G S + + + + + + K+ G + P A
Sbjct: 225 ---KGR----EIECAVLGNDNPQASTCGEIVL--NSEFYAYDTKYIDDQGAKVVVPAA-- 273
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +E DK +Q L G +R+D F+ DN +V+I E+NT+PG T
Sbjct: 274 IDSEVNDKIRQIAVRAYQTLGCSGMARVDVFLTADN-DVVINEINTLPGFT 323
>gi|145597093|ref|YP_001161390.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
gi|145306430|gb|ABP57012.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
Length = 326
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 157/384 (40%), Gaps = 76/384 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRV ++ GG S ER +SL S R VLD + R ++ L
Sbjct: 14 LRVLVLAGGLSYERDVSLRSGRRVLDAL-------RAVGVEAELR--------------- 51
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D L +A D V +HG GEDG ++ VL+ +VP+VG +
Sbjct: 52 DADVAL------------LPALVADPPDAVVIALHGATGEDGSLRGVLDLCDVPYVGCDA 99
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
RA R+A+DK A + ++ I P ++ + SEL V +++ G ++VKP
Sbjct: 100 RASRRAWDKPSAKTVL-REAHIPTPDWVALPHD-RFSELGAVAVLDRIVDRLGLPLMVKP 157
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGII-LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
+ GS +G V V DS ++ D +VE +L G++ V+D+G G
Sbjct: 158 AQGGSGLGAAV---VRDSAALPAAMVGCFAYDSTALVERYLS-GTDVAVSVIDLGEGPQA 213
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P +V++ ++ +++Y +Y + +HTP R V ++ A
Sbjct: 214 LP--------------AVEIVPRNGVYDYAARYT-AGRTTWHTPARLTSEVAEAVAGLAV 258
Query: 376 LLFQRLGLCDFARIDGWF-LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
LGL D +R+D HV +N+ GM +TS L
Sbjct: 259 AAHTALGLRDLSRVDLIVDADGQPHVLG------------------VNVAPGMTETSLLP 300
Query: 435 QQASKVGFSHSNILRTIIGHACSR 458
A G ++ T++ A +R
Sbjct: 301 LAAQAAGLDFGRMIGTLVSQAAAR 324
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN--HLADLGVLT 694
V IA+HG GEDG+L+ +L+ VPY G AS+ DK + L H+ +
Sbjct: 68 AVVIALHGATGEDGSLRGVLDLCDVPYVGCDARASRRAWDKPSAKTVLREAHIPTPDWVA 127
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
+ D R +L ++D + +L L VKPA+ G G A
Sbjct: 128 LPHD--RFSELGAVAVLD---RIVDRLGLP-LMVKPAQGGSGLGAA 167
>gi|418791300|ref|ZP_13347063.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418799622|ref|ZP_13355288.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392755389|gb|EJA12299.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392763940|gb|EJA20746.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
Length = 362
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 163/392 (41%), Gaps = 55/392 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGS---LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
PA + SLAQ G ++ VD++FP +HG GEDG +Q +L N
Sbjct: 63 DPAHIALRPSAISLAQVPGKHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVAN 122
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
+PFVG+ + DK A + G P L + N S V ++L
Sbjct: 123 LPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVESRL---G 177
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVL- 307
+ VKP GSS+GV+ V + + + + L D +VVVE ++ G E VL
Sbjct: 178 LPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREIECAVLG 233
Query: 308 -DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
D C +VL + Y KY+ P + P V
Sbjct: 234 NDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPAQIPSEV 276
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ IR A +Q LG AR+D + + V + T G FT+I++
Sbjct: 277 NDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTNISMYPK 328
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +++++ +I A R
Sbjct: 329 LWQAS---------GLGYTDLISRLIELALER 351
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 99 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 155
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 156 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 197
>gi|205351693|ref|YP_002225494.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207855862|ref|YP_002242513.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|378956238|ref|YP_005213725.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|421357832|ref|ZP_15808140.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421365175|ref|ZP_15815397.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421369051|ref|ZP_15819235.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421372498|ref|ZP_15822647.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421376110|ref|ZP_15826219.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421380679|ref|ZP_15830741.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421384044|ref|ZP_15834073.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421392545|ref|ZP_15842502.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421395938|ref|ZP_15845870.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421398597|ref|ZP_15848502.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421405221|ref|ZP_15855056.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421407820|ref|ZP_15857627.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421414105|ref|ZP_15863851.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421419510|ref|ZP_15869202.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421423813|ref|ZP_15873464.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421425567|ref|ZP_15875202.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421429915|ref|ZP_15879509.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421436742|ref|ZP_15886268.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421439116|ref|ZP_15888607.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445790|ref|ZP_15895211.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|436800983|ref|ZP_20524665.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436810531|ref|ZP_20529569.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436813721|ref|ZP_20531909.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436831445|ref|ZP_20536113.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436849715|ref|ZP_20540852.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436856128|ref|ZP_20545233.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436863113|ref|ZP_20549656.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436871589|ref|ZP_20554763.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436878740|ref|ZP_20559159.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436886855|ref|ZP_20563261.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436894477|ref|ZP_20567955.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436904604|ref|ZP_20574621.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436909919|ref|ZP_20576504.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436918172|ref|ZP_20581343.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436925606|ref|ZP_20586038.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436934213|ref|ZP_20590217.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436941360|ref|ZP_20594920.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436949349|ref|ZP_20599363.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436959598|ref|ZP_20603795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436975183|ref|ZP_20611459.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436987124|ref|ZP_20615768.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436999661|ref|ZP_20620234.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437009979|ref|ZP_20623959.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437018224|ref|ZP_20626716.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437035491|ref|ZP_20633417.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437046659|ref|ZP_20638475.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437049410|ref|ZP_20640030.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437056776|ref|ZP_20644144.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437065228|ref|ZP_20648913.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437078992|ref|ZP_20656486.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437082015|ref|ZP_20658090.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437090040|ref|ZP_20662612.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437117094|ref|ZP_20669714.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437122610|ref|ZP_20672452.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437132712|ref|ZP_20678162.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437137819|ref|ZP_20680614.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437149132|ref|ZP_20688005.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437151909|ref|ZP_20689580.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437160858|ref|ZP_20694931.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437172713|ref|ZP_20701236.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437176769|ref|ZP_20703573.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437188178|ref|ZP_20710182.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437239946|ref|ZP_20714324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437259639|ref|ZP_20717159.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437272650|ref|ZP_20724400.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437274668|ref|ZP_20725360.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437288288|ref|ZP_20730622.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437307076|ref|ZP_20734718.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437329082|ref|ZP_20741172.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437338587|ref|ZP_20743792.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437404367|ref|ZP_20752143.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437456207|ref|ZP_20760326.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437470071|ref|ZP_20765086.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437485210|ref|ZP_20769322.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437499114|ref|ZP_20773923.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437513593|ref|ZP_20777571.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437543895|ref|ZP_20782742.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437554682|ref|ZP_20784454.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437571627|ref|ZP_20788736.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437595501|ref|ZP_20795940.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437602432|ref|ZP_20798439.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437625291|ref|ZP_20805376.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437653970|ref|ZP_20810294.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437658543|ref|ZP_20811750.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437672133|ref|ZP_20816132.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437694856|ref|ZP_20821931.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437710283|ref|ZP_20826388.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437726192|ref|ZP_20829997.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437768040|ref|ZP_20835274.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|438023708|ref|ZP_20855006.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438091518|ref|ZP_20861029.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438105849|ref|ZP_20866467.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438114524|ref|ZP_20870140.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438147299|ref|ZP_20876112.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|445132340|ref|ZP_21382127.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445168128|ref|ZP_21394798.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445218130|ref|ZP_21402467.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445219501|ref|ZP_21402802.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445329390|ref|ZP_21413448.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445343592|ref|ZP_21417061.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445362500|ref|ZP_21424260.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|205271474|emb|CAR36291.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206707665|emb|CAR31949.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|357206849|gb|AET54895.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|395980686|gb|EJH89909.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395983346|gb|EJH92539.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395990069|gb|EJH99201.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|396000148|gb|EJI09163.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|396003337|gb|EJI12325.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396003728|gb|EJI12715.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396008106|gb|EJI17041.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396010982|gb|EJI19893.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396020606|gb|EJI29447.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396024532|gb|EJI33318.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396029752|gb|EJI38488.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396030387|gb|EJI39121.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396035650|gb|EJI44322.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396035861|gb|EJI44532.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396037199|gb|EJI45850.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396052062|gb|EJI60570.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396056838|gb|EJI65311.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396057232|gb|EJI65704.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396064225|gb|EJI72612.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396071322|gb|EJI79647.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|434938476|gb|ELL45444.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434958602|gb|ELL52145.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965023|gb|ELL57986.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434975229|gb|ELL67539.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434982402|gb|ELL74225.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434988292|gb|ELL79891.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434991561|gb|ELL83049.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434997640|gb|ELL88879.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435000804|gb|ELL91926.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435007416|gb|ELL98269.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435011387|gb|ELM02107.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435017126|gb|ELM07634.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435018291|gb|ELM08766.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435028292|gb|ELM18371.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435030904|gb|ELM20893.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435039999|gb|ELM29768.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435041353|gb|ELM31095.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435045191|gb|ELM34836.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435050134|gb|ELM39639.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435054047|gb|ELM43483.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435054263|gb|ELM43698.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435059705|gb|ELM48980.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435060202|gb|ELM49472.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435066879|gb|ELM55950.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435074858|gb|ELM63681.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435078129|gb|ELM66873.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435081816|gb|ELM70457.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435096294|gb|ELM84566.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435096948|gb|ELM85210.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435099876|gb|ELM88067.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435101348|gb|ELM89502.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435111183|gb|ELM99088.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435113466|gb|ELN01312.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435115058|gb|ELN02848.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435122259|gb|ELN09781.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435123436|gb|ELN10929.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435130941|gb|ELN18169.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435134453|gb|ELN21581.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435143382|gb|ELN30248.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435143790|gb|ELN30644.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435146371|gb|ELN33164.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435155494|gb|ELN42038.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435156098|gb|ELN42600.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435165027|gb|ELN51087.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435167982|gb|ELN53835.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435175746|gb|ELN61149.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435181195|gb|ELN66272.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435183688|gb|ELN68649.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435187064|gb|ELN71877.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435190613|gb|ELN75195.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435195978|gb|ELN80334.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435205442|gb|ELN89041.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435206914|gb|ELN90406.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435214956|gb|ELN97704.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435216385|gb|ELN98860.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435224037|gb|ELO06021.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435230230|gb|ELO11564.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435234499|gb|ELO15354.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435243558|gb|ELO23815.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435248080|gb|ELO28001.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435251069|gb|ELO30774.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435253110|gb|ELO32598.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435260120|gb|ELO39333.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435264738|gb|ELO43635.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435270542|gb|ELO49038.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435278436|gb|ELO56307.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435279775|gb|ELO57519.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435289056|gb|ELO66046.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435292142|gb|ELO68931.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435307312|gb|ELO82487.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435315927|gb|ELO89147.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435321538|gb|ELO93953.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435328923|gb|ELP00381.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435331206|gb|ELP02399.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|444849028|gb|ELX74145.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444856633|gb|ELX81659.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444864643|gb|ELX89437.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444871042|gb|ELX95497.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444879150|gb|ELY03258.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444881396|gb|ELY05440.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444884179|gb|ELY08023.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
Length = 364
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QLPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DIAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|419958135|ref|ZP_14474201.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
GS1]
gi|388608293|gb|EIM37497.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
GS1]
Length = 365
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 165/394 (41%), Gaps = 59/394 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNTP 136
RVG++ GG SAE +SL SA++++D I V ID+ + ++Q ++++ P
Sbjct: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLHADDP 64
Query: 137 ADFDFKLESLAQGF------GSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
A ++ G L + A A +D+VFP +HG GEDG +Q +L N
Sbjct: 65 AHIALNPSDISVATVPGVVQGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMAN 124
Query: 190 VPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
+PFVG+ GS AC DK D + + + + + F+ + N + S + +L
Sbjct: 125 LPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANRDKHSFAQIQAQL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ +A + E D +VVVE + G E V
Sbjct: 179 --GLPLFVKPANQGSSVGVSKVTSEA-QFNEAVRLAFE-FDHKVVVEQGIN-GREIECAV 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C VVL ++Y KY+ + P
Sbjct: 234 LGNDFPQASTCGEVVL-----------------NSDFYSYDTKYIDDKGAQVVVPAALDP 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V + IR A +Q LG C AR+D + P + V + T G FT+I++
Sbjct: 277 DVNDKIRAIAVEAYQALGCCGMARVDVFLTPDNEVVINEINTLPG--------FTNISMY 328
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G S+ ++ +I A R
Sbjct: 329 PKLWQAS---------GISYPELITRLIELALER 353
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 118/315 (37%), Gaps = 62/315 (19%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 101 VVFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFV 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R D K I +L L VKPA G S GV+++ V+
Sbjct: 160 TLTRANRD--KHSFAQIQAQLG-----LPLFVKPANQGSSVGVSKVTSEAQFNEAVR--- 209
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
L F E D + Q N
Sbjct: 210 ---------------------------LAF----EFDHKVVVEQGINGR----------- 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI V+G S V + + D S + K+ G + P A + + DK
Sbjct: 228 --EIECAVLGNDFPQASTCGEVVL--NSDFYSYDTKYIDDKGAQVVVPAA--LDPDVNDK 281
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 936
+ AL G +R+D F+ DN EV+I E+NT+PG T + ++ L + +
Sbjct: 282 IRAIAVEAYQALGCCGMARVDVFLTPDN-EVVINEINTLPGFT--NISMYPKLWQASGIS 338
Query: 937 PHQFFRKVLDLGSER 951
+ ++++L ER
Sbjct: 339 YPELITRLIELALER 353
>gi|375117814|ref|ZP_09762981.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326622081|gb|EGE28426.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
Length = 370
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 10 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 68
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 69 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 124
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 125 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 182
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 183 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 235
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 236 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 278
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 279 QLPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 330
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 331 ISMYPKLWQAS---------GLGYTDLISRLIELALER 359
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 107 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 163
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 164 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 205
>gi|291517448|emb|CBK71064.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
F8]
Length = 395
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 129/323 (39%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+ G
Sbjct: 97 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYAG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 157 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 213
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 214 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGRE 264
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 265 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 324
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 325 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 367
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 368 ISMYPKAWDATGVSYTELITRLI 390
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYAGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 189 DAR------NFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232
>gi|393763163|ref|ZP_10351786.1| D-alanine--D-alanine ligase [Alishewanella agri BL06]
gi|392606080|gb|EIW88968.1| D-alanine--D-alanine ligase [Alishewanella agri BL06]
Length = 303
Score = 92.4 bits (228), Expect = 1e-15, Method: Composition-based stats.
Identities = 95/379 (25%), Positives = 153/379 (40%), Gaps = 84/379 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG SAER +SL S ++VL + +D +NA+A
Sbjct: 6 RVAVMFGGRSAEREVSLRSGKAVLAAL-----------LDAGINAFA------------- 41
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD K + L+ + D VF +HGR GEDG +Q L++ +P+ G+G
Sbjct: 42 FDPKEQPLS-------------SLQADQVFIVLHGRGGEDGTMQGALQQLGLPYTGSGVL 88
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK QG T P +++ + + + + L GKV+VKP
Sbjct: 89 GSALAMDKIRCKWLFQAQGLPTAPFLVVRPGDTDYATM--------LQQLGGKVMVKPAN 140
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIG++ A D L A + D V+VE ++ G EFT +L+ G
Sbjct: 141 EGSSIGMSAA-STADELATAIATAHQ-YDQEVLVERWING-REFTIAILN-GQ------- 189
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+LP V++R A ++Y KY Y P + ++++ A F
Sbjct: 190 -VLPI---------VEMRTPRAFYDYEAKY-QANSTEYLCPAPLTAELTAAMQQSALAAF 238
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+G + R+D + H ++N + GM + S + A
Sbjct: 239 NAVGASGWGRVDLMLDQNGQH-----------------YLLEVNTVPGMTEKSLVPMAAK 281
Query: 439 KVGFSHSNILRTIIGHACS 457
G+S ++ I+ A S
Sbjct: 282 AAGYSFQQLVLAILQQAQS 300
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 77/291 (26%), Positives = 121/291 (41%), Gaps = 75/291 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFI +HG GEDGT+Q L+ G+PYTG GV+ S MDK+ G+ T
Sbjct: 57 VFIVLHGRGGEDGTMQGALQQLGLPYTGSGVLGSALAMDKIRCKWLFQA---QGLPTAPF 113
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V R D T + +L K+ VKPA +G S G++ A++L
Sbjct: 114 LVVRPGD---TDYATMLQQLGGKVM-----VKPANEGSSIGMSAASTADELA-------- 157
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ + AH + E+L+ RW
Sbjct: 158 -------TAIATAHQYDQ------EVLV-----------------------------ERW 175
Query: 818 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
+ E T+ ++ ++P V ++ E K+Q + L P P + T A+
Sbjct: 176 INGREFTIAILNG-----QVLPIVEMRTPRAFYDYEAKYQANSTEYLCPAPLTAELTAAM 230
Query: 875 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
Q+ L A NA+ G+ R+D ++ NG+ ++EVNTVPGMT +++
Sbjct: 231 ----QQSALAAFNAVGASGWGRVDLMLD-QNGQHYLLEVNTVPGMTEKSLV 276
>gi|189347029|ref|YP_001943558.1| D-alanyl-alanine synthetase A [Chlorobium limicola DSM 245]
gi|229463739|sp|B3EDF4.1|DDL_CHLL2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|189341176|gb|ACD90579.1| D-alanine/D-alanine ligase [Chlorobium limicola DSM 245]
Length = 363
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 117/282 (41%), Gaps = 57/282 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HG GEDG +Q LL+ G+PYTG GV AS MDK T L AD GV T
Sbjct: 103 VFIALHGSYGEDGRVQGLLDTMGIPYTGCGVSASAIAMDKALTKLC---AADAGVATAPS 159
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ L P + HEL L VKPA G S G+++
Sbjct: 160 ITLDADSYLADP--EPVHELVDSTFGYPLFVKPASLGSSVGISK---------------- 201
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ +P PE L + +IL + + K
Sbjct: 202 ----------------VHLPAALPEALKVACSYDR-KILVEAAVSGK------------- 231
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V V+G + S+ P V+ D ++K+ T P + + + LD
Sbjct: 232 -EIEVAVLGNDRPVASV-PG-EVEPGSDFYDFQDKYIHNTAKTFIP---ARLPDKLLDSV 285
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + AL G SR+D FVN +NG +++ E+NT+PG T
Sbjct: 286 RCSAITVYKALGCRGMSRVDFFVNEENGSIVLNEINTIPGFT 327
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 47/300 (15%)
Query: 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFIT 220
AA +D+VF +HG +GEDG +Q +L+ +P+ G G A A DK L + G T
Sbjct: 97 AAGIDVVFIALHGSYGEDGRVQGLLDTMGIPYTGCGVSASAIAMDKALTKLCAADAGVAT 156
Query: 221 VPSFLLQGSEVNESELSNWFVTNKL-DPNSG-KVVVKPTRAGSSIGVTVAY---GVIDSL 275
PS L +S L++ ++L D G + VKP GSS+G++ + + ++L
Sbjct: 157 APSITLDA----DSYLADPEPVHELVDSTFGYPLFVKPASLGSSVGISKVHLPAALPEAL 212
Query: 276 KKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDV 335
K A D +++VE + G E VL G D PV +P EVE GS
Sbjct: 213 KVAC-----SYDRKILVEAAVS-GKEIEVAVL----GND-RPVASVPGEVE---PGS--- 255
Query: 336 REKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395
++++ KY+ + P R P +++S+R A +++ LG +R+D +F+
Sbjct: 256 ----DFYDFQDKYIHNTAKTF-IPARLPDKLLDSVRCSAITVYKALGCRGMSRVD-FFV- 308
Query: 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
+ E G+I+ +IN I G S + G + ++ ++ +A
Sbjct: 309 --------------NEENGSIVLNEINTIPGFTDISMYPKLFEASGIPFTALIDKLLHYA 354
>gi|197261642|ref|ZP_03161716.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197239897|gb|EDY22517.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
Length = 364
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSGFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|405982300|ref|ZP_11040622.1| D-alanine-D-alanine ligase [Actinomyces neuii BVS029A5]
gi|404390071|gb|EJZ85141.1| D-alanine-D-alanine ligase [Actinomyces neuii BVS029A5]
Length = 336
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 145/320 (45%), Gaps = 49/320 (15%)
Query: 149 GFGS-LSEFAEHLAANV-----DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202
GF + L EF HL N+ D+VFP +HG FGEDG +Q +L+ PFVG+G +AC+
Sbjct: 46 GFDAHLVEFGPHLLENLNRMQPDVVFPLVHGSFGEDGTLQALLKLAGFPFVGSGPQACKL 105
Query: 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGS 261
+ K A ++K G T P+ L EV +L + + + L+ G ++VKP GS
Sbjct: 106 SSAKPVAKSVVAKNGLTTPPAVSLP-QEVFR-QLDSDQILDLLENKLGLPMMVKPASGGS 163
Query: 262 SIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
++GVT V D A+ +I D+ V+VE ++ G E ++D G PV
Sbjct: 164 ALGVTY---VNDRADLARAMISAFSYDEEVLVEQYV-SGRELAVSIIDSEDGPVALPV-- 217
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
V++ +D ++Y +Y + A+ P + ++ + A +
Sbjct: 218 ------------VEIMPEDGRYDYDARY-EVGRSAFSVPAELDQKALEAVHDLALGCHRV 264
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
L L +RID E GT F D N+ GM TS LF QA++
Sbjct: 265 LELSHLSRIDVIL-----------------DEQGTPWFIDANVAPGMTDTS-LFPQAAEA 306
Query: 441 --GFSHSNILRTIIGHACSR 458
G S IL+ ++ A +
Sbjct: 307 AEGSSFQQILQDLVIRAYQQ 326
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATS-LALNHLADLGVLT 694
VF VHG GEDGTLQ+LL+ G P+ G G A K K VA S +A N L ++
Sbjct: 69 VVFPLVHGSFGEDGTLQALLKLAGFPFVGSGPQACKLSSAKPVAKSVVAKNGLTTPPAVS 128
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
+ ++V R+ D I+D+ L +KL + VKPA G + GV + DL
Sbjct: 129 LPQEVFRQLD--SDQILDL---LENKLGLP-MMVKPASGGSALGVTYVNDRADLA 177
>gi|172057823|ref|YP_001814283.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
gi|171990344|gb|ACB61266.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
Length = 315
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 155/384 (40%), Gaps = 82/384 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ--GDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
++V ++ GG S ER +SLNS +SV++ ++ G +++ ++ +R
Sbjct: 1 MKVAVLFGGISGEREVSLNSGKSVINALESKGHEVVAVDFHPERA--------------- 45
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
E L V+ +HG++GEDG +Q +LE +P+ G+
Sbjct: 46 ---------------------EEILNLQVEAAVIALHGKYGEDGRVQALLEMAGIPYTGS 84
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
G A A DK + + K G L++ + E ++ W VVK
Sbjct: 85 GVLASALAMDKARSKVHFEKAGIRIARDVLVERGDDIEQKIKQW-------DAQFPCVVK 137
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
P + GSS G+T+A +D +GI L DD V++E F++ G E T VL
Sbjct: 138 PAQEGSSNGLTIA---MDEQMLRQGIELAFQADDAVLIEQFIK-GREVTVPVLGAKGQEK 193
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PV +++ K+ ++Y KY + P +F +++E A
Sbjct: 194 ALPV--------------IEIIPKNEFYDYESKY-AIGGSEHICPAQFDEKTTQTLQEWA 238
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
L Q LG ++R D + +P G + + N + GM TS
Sbjct: 239 VLAHQVLGCAGYSRTD-FLVPDE----------------GAPVILETNTLPGMTSTSLFP 281
Query: 435 QQASKVGFSHSNILRTIIGHACSR 458
A VG + ++ T I A +R
Sbjct: 282 DGARAVGIDYPELVETFIELAITR 305
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 131/287 (45%), Gaps = 66/287 (22%)
Query: 640 IAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD- 698
IA+HG GEDG +Q+LLE G+PYTG GV+AS MDK + + H G+ I +D
Sbjct: 58 IALHGKYGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKV---HFEKAGI-RIARDV 113
Query: 699 -VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V R +D+ + + W ++ C VKPA++G S G LT+ A++E
Sbjct: 114 LVERGDDIEQK--IKQW---DAQFPC---VVKPAQEGSSNG---------LTI---AMDE 153
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+LR G IE+ + ++ E F+ KG
Sbjct: 154 QMLR---------QG-IELAFQADDAVLIEQFI---------------------KGR--- 179
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
E+TV V+G G +L P + + + E K+ G ++ P +T+ L
Sbjct: 180 -EVTVPVLGAKGQEKAL-PVIEIIPKNEFYDYESKYAIGGSEHICPAQFDEKTTQTL--- 234
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
++ L L G+SR D F+ D G +I+E NT+PGMT +++
Sbjct: 235 QEWAVLAHQVLGCAGYSRTD-FLVPDEGAPVILETNTLPGMTSTSLF 280
>gi|421884396|ref|ZP_16315611.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|379986110|emb|CCF87884.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 364
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 155/373 (41%), Gaps = 56/373 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVTNEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFL 433
I++ + Q S L
Sbjct: 325 ISMYPKLWQASGL 337
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 18/110 (16%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAPF 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 159 ITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKV 198
>gi|238063267|ref|ZP_04607976.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
gi|237885078|gb|EEP73906.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
Length = 365
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 163/395 (41%), Gaps = 57/395 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA--------- 129
RV L+ GG S E GIS SA SVL + D+ V I R + ++SA
Sbjct: 8 RVALVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRA-GKWVLTSADPAQLAISA 66
Query: 130 ----QVYSNTPADFDFKLESLAQGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEV 184
++ ++ AD + + G L A A+VD+VFP +HG +GEDG IQ +
Sbjct: 67 RRLPEITADAGADLVLRADPTGSGLMVLDPAEGPRAIADVDVVFPVLHGAYGEDGTIQGM 126
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNESELSNWFVTN 243
LE +P+VG A A DK + +G P +L+ G ++E + +
Sbjct: 127 LEMAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGPYAVLRNGVTLSEEDKRRLGL-- 184
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
V VKP+RAGSS G+T +D L+ A E ID +V+VE + G E
Sbjct: 185 -------PVFVKPSRAGSSFGITKVDDWVD-LEAAVAAARE-IDPKVLVEAAIV-GREIE 234
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL+ +G VL VE++ G D +++ KYL + Y P P
Sbjct: 235 CGVLEGEAGGGAEASVL----VEVRAGGDHD------WYDFEAKYLSEPE--YDLPATLP 282
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V ++E A F L AR+D + P + +IN
Sbjct: 283 EHVTRQVQEYAVRAFAALDCAGLARVDFFVTPDL-----------------DVYLNEINT 325
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G TS + G + ++ +I A R
Sbjct: 326 MPGFTPTSMFPLMWAASGLEYPKLVNRLIRTAQRR 360
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 56/130 (43%), Gaps = 29/130 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-------SLALNHLAD 689
VF +HG GEDGT+Q +LE G+PY G V AS MDK T + + A
Sbjct: 108 VVFPVLHGAYGEDGTIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGPYAV 167
Query: 690 L--GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
L GV +D RR L P+ VKP+R G S G+ ++ D
Sbjct: 168 LRNGVTLSEEDKRR----LGLPVF----------------VKPSRAGSSFGITKVDDWVD 207
Query: 748 LTVYVKALEE 757
L V A E
Sbjct: 208 LEAAVAAARE 217
>gi|408670827|ref|YP_006870898.1| D-alanine--D-alanine ligase [Borrelia garinii NMJW1]
gi|407240649|gb|AFT83532.1| D-alanine--D-alanine ligase [Borrelia garinii NMJW1]
Length = 356
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 165/393 (41%), Gaps = 60/393 (15%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + S+ P D
Sbjct: 2 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSV--SDPPKLID 59
Query: 141 FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
+ + + F+ + +D+VFP +HGR GEDG IQ VL+ ++P +G G
Sbjct: 60 IDVLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 119
Query: 201 RQAFDKYDASLEMSKQGFITVP-------SFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
+ +KY L + VP +LL E+ N + V+
Sbjct: 120 AISSNKYFCKLLLKSFNIPLVPFIGFRQYDYLLDKEEIKR---------NVREALGYPVI 170
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP GSSIG+ VAY S + + I E + D +++E F+E +I+ +
Sbjct: 171 VKPAVLGSSIGINVAY----SENQIEFFIEEALKYDLTILIEKFIEAREIECSIIGNEKI 226
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVIN 368
+ P EV +Q D IF +Y KY +P + ++ P + +
Sbjct: 227 K------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLL 270
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
SI+E A L+++ L L AR+D +F+ + G I +IN I G
Sbjct: 271 SIKEYAFLVYKNLELRGMARVD-FFVEKKS---------------GKIYLNEINTIPGFT 314
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
S + S G +++ +I +A + N
Sbjct: 315 DISMFAKMCSHDGLQFKDLVDNLINYAFQSYIN 347
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 106/283 (37%), Gaps = 53/283 (18%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG GEDG +Q +L+ +P G G++ S +K L L V I
Sbjct: 85 VVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAISSNKYFCKLLLKSFNIPLVPFIG 144
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R+ + LL +I + L + VKPA G S G+ + +++
Sbjct: 145 --FRQYDYLLDKE--EIKRNVREALGYPVI-VKPAVLGSSIGINVAYSENQIEFFIEEAL 199
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ L I + E F+E EI S K ++ G
Sbjct: 200 KYDLTI----------------------LIEKFIEAREIECSIIGNEK--IKIFSPGE-- 233
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
V + + + +S++P G I P + T L
Sbjct: 234 -VVVQDFIFYDYDAKYSVIP-------------------GNSIIFNIPAQ--LETNQLLS 271
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K+ L+ L+L G +R+D FV +G++ + E+NT+PG T
Sbjct: 272 IKEYAFLVYKNLELRGMARVDFFVEKKSGKIYLNEINTIPGFT 314
>gi|268318672|ref|YP_003292328.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785]
gi|262397047|emb|CAX66061.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785]
Length = 361
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 166/390 (42%), Gaps = 52/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSNTP 136
+++GLI GG S+E +S+ SA ++ + I + V +I + A S +V N
Sbjct: 5 IKIGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNP- 63
Query: 137 ADFDFKLE-SLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
K+E + ++S E +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 64 -----KMEVANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGK 251
A DK + + G ++ E N+ +L +V ++L
Sbjct: 119 DDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQL---GSD 175
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
+ VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 176 LFVKPSNQGSSVGVS----HVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL--- 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ + KD+ + Y KY P + P ++ +
Sbjct: 229 --GND-KPIVAGVGQI---------INAKDSFYTYENKYDDDSTSTLEIPAKLPEGIVET 276
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A +FQ ARID +E ++ T++N + G
Sbjct: 277 VRKNALKVFQATECSGLARIDSML----------------RSEDNEVVLTEVNALPGFTN 320
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + ++G +++++ +I +A R+
Sbjct: 321 ISMYPKLFEEIGIPYTDLITKLIDYAMERY 350
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 169/461 (36%), Gaps = 123/461 (26%)
Query: 496 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 555
+IFGG++SE +VS+MS N++ + N +V P + + D + D D+ SR
Sbjct: 9 LIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWITN--------DGYLAD-DADSRK 58
Query: 556 VWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIA 615
V P +E P + A S++
Sbjct: 59 VLDNP---------------KMEVANPHKVANISNII----------------------- 80
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
EL R I+ F VHG +GEDG LQ L P+ G V+A+ M
Sbjct: 81 -ELKDRPEID-----------VFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTM 128
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPARDG 734
DK T + LA + + K + K P + + +E + L VKP+ G
Sbjct: 129 DKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQG 184
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 794
S GV+ + ++ V AL E F D+
Sbjct: 185 SSVGVSHVTNEKEYKV---ALAEA------------------------------FKYDDK 211
Query: 795 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 854
+L + + GN + + VG I + K+S + E K+
Sbjct: 212 VLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYENKYD 256
Query: 855 GGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
+ L P P I+ T + K + A + G +RID+ + ++ EV++ E
Sbjct: 257 DDSTSTLEIPAKLPEGIVETVRKNALK-----VFQATECSGLARIDSMLRSEDNEVVLTE 311
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
VN +PG T + ++ L E+ + K++D ER+
Sbjct: 312 VNALPGFT--NISMYPKLFEEIGIPYTDLITKLIDYAMERY 350
>gi|332281524|ref|ZP_08393937.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
gi|332103876|gb|EGJ07222.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 166/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N + +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRNNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 110/282 (39%), Gaps = 60/282 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R + + + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRNNIS------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD---- 209
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
L F E D + Q KG
Sbjct: 210 --------------------------LAF----EFDHKVIVEQGI---------KGR--- 227
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V+G S + + + D + + K+ G + P A ++ E DK
Sbjct: 228 -EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEINDKI 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 283 RAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|168240194|ref|ZP_02665126.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194451264|ref|YP_002044411.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|386590313|ref|YP_006086713.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|419727540|ref|ZP_14254508.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419733842|ref|ZP_14260737.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419738949|ref|ZP_14265705.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419745616|ref|ZP_14272248.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419749497|ref|ZP_14275976.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421572616|ref|ZP_16018262.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421577525|ref|ZP_16023113.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421582113|ref|ZP_16027654.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421584486|ref|ZP_16029994.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|194409568|gb|ACF69787.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205340288|gb|EDZ27052.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|381299029|gb|EIC40103.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381300789|gb|EIC41847.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381301122|gb|EIC42178.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381305695|gb|EIC46605.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381310653|gb|EIC51479.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383797357|gb|AFH44439.1| D-alanine--D-alanine ligase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|402515550|gb|EJW22964.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402516113|gb|EJW23526.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402516442|gb|EJW23853.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402531004|gb|EJW38217.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QLPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|113869224|ref|YP_727713.1| D-alanine--D-alanine ligase [Ralstonia eutropha H16]
gi|123133594|sp|Q0K6M6.1|DDL_RALEH RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|113528000|emb|CAJ94345.1| D-Alanine-D-Alanine ligase [Ralstonia eutropha H16]
Length = 327
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 153/380 (40%), Gaps = 84/380 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL +Q R ++A+
Sbjct: 16 KVGVLLGGRSAEREISLMSGNGVLAALQ-----------SRGVDAHG------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD L+S+ AE AA D VF +HGR+GEDG IQ +LE+ VP+ G+G
Sbjct: 52 FDPGLQSV----------AELAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK G T P F + ++ + ++ ++VKP R
Sbjct: 102 ASAMAMDKQATKRLWMTYGLAT-PRFAMLHADTDFDAVAADLGL--------PLIVKPAR 152
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT A + + +KA +D+ V+ E F++ G+E T ++ G +
Sbjct: 153 EGSSIGLTKVTAADQMRAAFEKAA-----ALDNDVIAETFID-GAELTCPIVGEGDSAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + +A ++Y+ KY T Y P V +R A
Sbjct: 207 LPV--------------IRIVAPEANYDYQNKYF-TDDTQYLCPSGLDPEVEREVRALAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
++ LG +AR D G ++N GM S +
Sbjct: 252 QSYRVLGCRGWARADLMLRAD-----------------GKPFLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSNILRTIIGHA 455
A VG S+ + + ++ A
Sbjct: 295 AARAVGISYEDFVMQVVAAA 314
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 68/145 (46%), Gaps = 34/145 (23%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
GFD P S+ E LA VFIA+HG GEDGT+Q LLE GVPYTG GV+A
Sbjct: 51 GFD-----PGLQSVAE---LAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVLA 102
Query: 671 SKTCMDKVAT-------SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723
S MDK AT LA A +L + D L P++
Sbjct: 103 SAMAMDKQATKRLWMTYGLATPRFA---MLHADTDFDAVAADLGLPLI------------ 147
Query: 724 KTLCVKPARDGCSTGVARLCCAEDL 748
VKPAR+G S G+ ++ A+ +
Sbjct: 148 ----VKPAREGSSIGLTKVTAADQM 168
>gi|198244109|ref|YP_002214333.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|417537018|ref|ZP_12190014.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|445144129|ref|ZP_21386878.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445150294|ref|ZP_21389665.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|197938625|gb|ACH75958.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|353669206|gb|EHD06178.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|444847269|gb|ELX72419.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444857043|gb|ELX82059.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QLPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|333396882|ref|ZP_08478697.1| D-alanine--D-alanine ligase [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 343
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/401 (26%), Positives = 169/401 (42%), Gaps = 90/401 (22%)
Query: 78 LRVGLICGGPSAERGISLNS-------------ARSVLDHIQGDDL-----LVRCYYIDR 119
+++ ++ GG S ER +SL+S A ++D GDDL + +
Sbjct: 1 MKIVVLAGGRSPERNVSLSSGAKITNALREKGHAAVLIDLFLGDDLSDVETIAAVFQRPA 60
Query: 120 NLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDG 179
YAIS +V +N D +S G + DIVF +HG GE+G
Sbjct: 61 PSTDYAISE-EVLTNDAIDALRTTDSK----GLFGPNVLKICGAADIVFLGLHGEDGENG 115
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
+Q L+ + +P+ G+G A +K+ ++KQ LLQ +++N +
Sbjct: 116 KVQATLDLFGIPYTGSGFSASGITMNKH-----LAKQ--------LLQHNQINTARYQTI 162
Query: 240 FVTNKLDPNSG---KVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVE 293
+ P +VVKPT GSSIG+ + +I +L +A D+ VVVE
Sbjct: 163 KAGESV-PQLAFDFPMVVKPTHGGSSIGMEIVPDRPALIAALTEAG-----HFDNEVVVE 216
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 353
++ G EF+ VL+ + LP ++++ D ++Y KY
Sbjct: 217 EYI-AGREFSVGVLNGQA---------LP---------AIEITVADGWYDYEHKY-QDNG 256
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
Y TPP P V +++ A Q LGL ++ RID FL W
Sbjct: 257 ATYQTPPHIPATVHQEMQQMALATMQVLGLTNYGRID--FL------------------W 296
Query: 414 G--TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
TI + N + GM S L Q+A+ VG S++++ II
Sbjct: 297 DGQTIYVIEGNSLPGMTPHSLLPQEAAAVGISYADLCEQII 337
Score = 43.9 bits (102), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 686
VF+ +HG GE+G +Q+ L+ G+PYTG G AS M+K L H
Sbjct: 103 VFLGLHGEDGENGKVQATLDLFGIPYTGSGFSASGITMNKHLAKQLLQH 151
>gi|168465461|ref|ZP_02699343.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418763264|ref|ZP_13319388.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418766796|ref|ZP_13322868.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771969|ref|ZP_13327975.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418774779|ref|ZP_13330740.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418781265|ref|ZP_13337150.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418784729|ref|ZP_13340566.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418804671|ref|ZP_13360275.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419788990|ref|ZP_14314673.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419794032|ref|ZP_14319648.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|195631722|gb|EDX50242.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|392616122|gb|EIW98557.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392616456|gb|EIW98889.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392733544|gb|EIZ90746.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392734508|gb|EIZ91690.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392736807|gb|EIZ93969.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392747992|gb|EJA04983.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392749979|gb|EJA06955.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392754260|gb|EJA11179.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392769700|gb|EJA26429.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|432830367|ref|ZP_20063976.1| D-alanine-D-alanine ligase A [Escherichia coli KTE135]
gi|431380129|gb|ELG65029.1| D-alanine-D-alanine ligase A [Escherichia coli KTE135]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVLGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|452951140|gb|EME56590.1| D-alanine--D-alanine ligase [Amycolatopsis decaplanina DSM 44594]
Length = 316
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 152/380 (40%), Gaps = 72/380 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S ER +SL S R + ++ + L V + D L
Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSVALRAEGLTVEEWDTDAGL------------------ 47
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
LE L D +HG GE+G +Q VLE +VPFVGT S+
Sbjct: 48 ---LERLRT-------------QRPDAAIVALHGGEGENGAVQTVLEMLDVPFVGTSSQG 91
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTR 258
CR+A+DK A ++ GF T +L + EL V + + G +++KP +
Sbjct: 92 CRRAWDKPTAKALVADAGFTTPDWVVLPHNTFR--ELGAQAVLDSMVETLGVPMILKPDQ 149
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G V + G G D V+ E F+ G E V++ G + P
Sbjct: 150 GGSALGAQVVKDAAEMPGAMVGCFAYG--DTVLAEKFVS-GVEVAVTVIEGDEGPEALP- 205
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+V++ + +++Y +Y + TP R P ++ E A +
Sbjct: 206 -------------AVEIVPESGVYDYTARYT-AGLTDFFTPARIPDDAAKAVSELAVAVH 251
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
++LGL D +R D E GT+ F +NL G+ +TS +
Sbjct: 252 RQLGLRDISRTDAVV-----------------AEDGTVYFLAVNLSPGLTETSIVPVAIE 294
Query: 439 KVGFSHSNILRTIIGHACSR 458
G + ++ ++G A +R
Sbjct: 295 AAGATLGSVFAGLVGRAIAR 314
>gi|366160680|ref|ZP_09460542.1| D-alanyl-alanine synthetase A [Escherichia sp. TW09308]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 167/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGR----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N ++S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHKISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTNEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPDINDKIRAIAIQAYQALGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 114/286 (39%), Gaps = 66/286 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---L 693
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFI 159
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T+ + R K + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 160 TLTRANRHKIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTNEEQYAIAVD 209
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
L F E D + Q KG
Sbjct: 210 ------------------------------LAF----EFDHKVIVEQGI---------KG 226
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
EI V+G S + + + D + + K+ G + P A ++ +
Sbjct: 227 R----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPDI 278
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + AL G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 279 NDKIRAIAIQAYQALGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|385825061|ref|YP_005861403.1| D-alanine--D-alanine ligase [Lactobacillus johnsonii DPC 6026]
gi|329666505|gb|AEB92453.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii DPC 6026]
Length = 361
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 164/389 (42%), Gaps = 50/389 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSNTP 136
++VGLI GG S+E +S+ SA ++ + I + V +I + A S +V N
Sbjct: 5 IKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPQ 64
Query: 137 ADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+ + ++S E +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 65 MEV-----ANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGD 119
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGKV 252
A DK + + G ++ E N+ +L +V ++L +
Sbjct: 120 DVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQL---GSDL 176
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVG 310
VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 177 FVKPSNQGSSVGVS----HVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL---- 228
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D P+V ++ + KD+ + Y KY P + P ++ ++
Sbjct: 229 -GND-KPIVAGVGQI---------INAKDSFYTYENKYDDDSTSTLEIPAKLPEGIVETV 277
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R+ A +FQ ARID +E ++ T++N + G
Sbjct: 278 RKNALKVFQATECSGLARIDSML----------------RSEDNEVVLTEVNALPGFTNI 321
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + ++G +++++ +I +A R+
Sbjct: 322 SMYPKLFEEIGIPYTDLITKLIDYAMERY 350
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 104/464 (22%), Positives = 171/464 (36%), Gaps = 123/464 (26%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+V +IFGG++SE +VS+MS N++ + N +V P + + D + D D+
Sbjct: 6 KVGLIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWITN--------DGYLAD-DAD 55
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR V P +E P + A S++
Sbjct: 56 SRKVLDNP---------------QMEVANPHKVANISNII-------------------- 80
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
EL R I+ F VHG +GEDG LQ L P+ G V+A+
Sbjct: 81 ----ELKDRPEID-----------VFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAA 125
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPA 731
MDK T + LA + + K + K P + + +E + L VKP+
Sbjct: 126 VTMDKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPS 181
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV+ + ++ V AL E F
Sbjct: 182 NQGSSVGVSHVTNEKEYKV---ALAEA------------------------------FKY 208
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
D++L + + GN + + VG I + K+S + E
Sbjct: 209 DDKVLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYEN 253
Query: 852 KFQGGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
K+ + L P P I+ T + K + A + G +RID+ + ++ EV+
Sbjct: 254 KYDDDSTSTLEIPAKLPEGIVETVRKNALK-----VFQATECSGLARIDSMLRSEDNEVV 308
Query: 909 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ EVN +PG T + ++ L E+ + K++D ER+
Sbjct: 309 LTEVNALPGFT--NISMYPKLFEEIGIPYTDLITKLIDYAMERY 350
>gi|400537047|ref|ZP_10800581.1| D-alanyl-alanine synthetase A [Mycobacterium colombiense CECT 3035]
gi|400330060|gb|EJO87559.1| D-alanyl-alanine synthetase A [Mycobacterium colombiense CECT 3035]
Length = 381
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 179/415 (43%), Gaps = 63/415 (15%)
Query: 64 EDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI------ 117
E T +RGG +RV ++ GG S E IS SA S+L ++ + V I
Sbjct: 5 ERSTPHPGSRGGDRVRVAVVFGGRSNEHAISCVSAGSILRNLDPERFDVVAIGITPQGSW 64
Query: 118 ---DRNLNAYAISSAQ---VYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPT 170
D + A AI+ Q V S++ + + G SL+ A + A+VD++FP
Sbjct: 65 VLTDGDPAALAITDRQLPEVTSDSGTELALTADPRRGGELVSLAPGASEVLASVDVIFPV 124
Query: 171 IHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE 230
+HG +GEDG IQ +LE VP+VG G A DK + +G +L+ S
Sbjct: 125 LHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFTAEGLPVGDYAVLRPSR 184
Query: 231 VNESELSNWFVTNKLDPNSGK-----VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG 285
++L P + V VKP R GSSIGV+ + S + G I
Sbjct: 185 ------------SRLAPEECERLGLPVFVKPARGGSSIGVS----RVSSWDQLDGAIAAA 228
Query: 286 I--DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFN 343
D +V+VE + G E VL++ G V T E++ G V RE D+ ++
Sbjct: 229 RRHDPKVIVEAAIV-GRELECGVLEMPDG-----TVEASTLGEIRVAG-VRGRE-DSFYD 280
Query: 344 YRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSS 403
+ KYL P + + +++R+ A F+ + AR+D +FL
Sbjct: 281 FSTKYL-DDAAELDVPAKVDDEIADTVRQLAVRAFRAIDCQGLARVD-FFL--------- 329
Query: 404 SETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
TE G +L +IN + G S + + G ++ +L T++ A +R
Sbjct: 330 -------TEDGPVL-NEINTMPGFTTISMYPRMWAASGVDYATLLATMVETALAR 376
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 66/157 (42%), Gaps = 38/157 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 693
+F +HG GEDGT+Q LLE GVPY G GV+AS MDK T + D VL
Sbjct: 121 IFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFTAEGLPVGDYAVL 180
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDLT 749
++ E +C+ L VKPAR G S GV+R+ + L
Sbjct: 181 RPSRSRLAPE------------------ECERLGLPVFVKPARGGSSIGVSRVSSWDQLD 222
Query: 750 VYVKALEECLLRIPPNSFSRAH--------GMIEMPN 778
+ A R P A G++EMP+
Sbjct: 223 GAIAAAR----RHDPKVIVEAAIVGRELECGVLEMPD 255
>gi|374337601|ref|YP_005094306.1| D-alanine--D-alanine ligase [Streptococcus macedonicus ACA-DC 198]
gi|372283706|emb|CCF01902.1| D-alanine--D-alanine ligase [Streptococcus macedonicus ACA-DC 198]
Length = 348
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 167/386 (43%), Gaps = 49/386 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I ++ + Q +S+ P D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGD---FIKTQEFSSKPVD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + IVFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVVESQKIKPSDIYEEGAIVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G+++ ++ V KL + V VKP G
Sbjct: 124 VAMDKISTKHVLESAGVPLVAYVTYVEGADLEKAVAE---VNEKL---TYPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + L+ D R+++E + A ++VG +
Sbjct: 178 SSVGISKADDE-EELRSAIDLALK-YDSRILIE------TGVNAREIEVGILGNADVQTT 229
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y KY+ ++ P ++ +R A+ F+
Sbjct: 230 LPGEV-----------VKDVAFYDYDAKYI-DNKITMDIPAHIDSSIMEEMRGYATTAFR 277
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G C +R D +FL HV+ ++N + G Q S
Sbjct: 278 AIGGCGLSRCD-FFLTEDGHVY----------------LNELNTMPGFTQWSMYPLLWEN 320
Query: 440 VGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 321 MGLAYSDLIEKLVELAKEMFEKRESH 346
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK++T + L GV
Sbjct: 84 EEGAIVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAMDKISTK---HVLESAGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + L+ + ++ +LT + VKPA G S G+++ E+L
Sbjct: 141 PLVAYVTYVEGADLEKAVAEVNEKLTYP-----VFVKPANMGSSVGISKADDEEEL 191
>gi|420367137|ref|ZP_14867942.1| D-alanine--D-alanine ligase A [Shigella flexneri 1235-66]
gi|391323569|gb|EIQ80212.1| D-alanine--D-alanine ligase A [Shigella flexneri 1235-66]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 166/396 (41%), Gaps = 61/396 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y S+
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GQWHVSDASNYLLNSD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN-------VDIVFPTIHGRFGEDGGIQEVL 185
PA + SLAQ G + + + A VD++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALRPSATSLAQVPGKQEQ--QLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGML 120
Query: 186 EKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
N+PFVG+ GS AC DK + G P L + N + +S V
Sbjct: 121 RVANLPFVGSDVLGSAAC---MDKDITKRLLRDAGLNIAPFITL--TRANRNAISFAEVE 175
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
++L + VKP GSS+GV+ +A + E D +VVVE ++ G E
Sbjct: 176 SRL---GLPLFVKPANQGSSVGVSKVTSEA-QYNQAVALAFE-FDHKVVVEQGIK-GREI 229
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL G D HP E+ L + Y KY+ P
Sbjct: 230 ECAVL----GND-HPQASTCGEIVLNSD----------FYAYDTKYIDDNGAKVVVPAAI 274
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
+ + IRE A +Q LG AR+D VF ++E ++ +IN
Sbjct: 275 ASEINDKIREIAIQAYQTLGCAGMARVD---------VFLTAEND--------VVINEIN 317
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + G +++++ +I A R
Sbjct: 318 TLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDKDITKRLLRD-AGLNIAPFIT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R + + + E+ S+L L VKPA G S GV+++
Sbjct: 161 LTRANRNAIS------FAEVESRLGLP-LFVKPANQGSSVGVSKV 198
>gi|238893305|ref|YP_002918039.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|365138379|ref|ZP_09345065.1| D-alanine-D-alanine ligase A [Klebsiella sp. 4_1_44FAA]
gi|419973391|ref|ZP_14488816.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419978574|ref|ZP_14493870.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419983961|ref|ZP_14499110.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419990012|ref|ZP_14504986.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419995892|ref|ZP_14510697.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420000803|ref|ZP_14515461.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420007571|ref|ZP_14522064.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420013364|ref|ZP_14527675.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420018449|ref|ZP_14532646.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420024539|ref|ZP_14538552.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420030296|ref|ZP_14544123.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420035400|ref|ZP_14549064.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420041734|ref|ZP_14555230.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420047796|ref|ZP_14561112.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420053497|ref|ZP_14566675.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420058339|ref|ZP_14571352.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420064628|ref|ZP_14577437.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420070285|ref|ZP_14582937.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420076184|ref|ZP_14588657.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420081843|ref|ZP_14594147.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|424829180|ref|ZP_18253908.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|425090203|ref|ZP_18493288.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428938773|ref|ZP_19011895.1| D-alanyl-alanine synthetase A [Klebsiella pneumoniae VA360]
gi|238545621|dbj|BAH61972.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|363655126|gb|EHL93994.1| D-alanine-D-alanine ligase A [Klebsiella sp. 4_1_44FAA]
gi|397348863|gb|EJJ41961.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397351645|gb|EJJ44728.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397355012|gb|EJJ48038.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397366876|gb|EJJ59491.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397368533|gb|EJJ61139.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397373018|gb|EJJ65490.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397380313|gb|EJJ72498.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397384272|gb|EJJ76392.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397390406|gb|EJJ82316.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397399154|gb|EJJ90811.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397402117|gb|EJJ93729.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397408136|gb|EJJ99512.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397416636|gb|EJK07809.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397418271|gb|EJK09430.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397424282|gb|EJK15189.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397433334|gb|EJK23984.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397437380|gb|EJK27949.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397441667|gb|EJK32033.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397447695|gb|EJK37885.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397452776|gb|EJK42842.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|405613887|gb|EKB86608.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|414706599|emb|CCN28303.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426305094|gb|EKV67223.1| D-alanyl-alanine synthetase A [Klebsiella pneumoniae VA360]
Length = 365
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 161/370 (43%), Gaps = 44/370 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y +
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQ-GLWHINDAGNYLLNAQ 62
Query: 135 TPADFDFKLES--LAQGFGSLS------EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + + LAQ G + E + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALRPSTVTLAQIPGREAQQLINAESGQPLAA-IDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK + G P L + N ++ S V
Sbjct: 122 MANLPFVGSDVLGSAAC---MDKDVTKRLLRDAGLAVAPFITL--TRANRAQFSFADVEA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + +A + E D +VVVE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVKNE-EQYHQAVALAFE-FDHKVVVEQGIK-GREIE 230
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + + Y KY+ Q P
Sbjct: 231 CAVL----GND-HPQASTCGEIVLNSE----------FYAYDTKYIDDQGAQVVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + + V + T G T ++ +
Sbjct: 276 PEINDKIRAIAVQAYQTLGCSGMARVDVFLTADNEVVINEINTLPGFTNIS--MYPKLWQ 333
Query: 424 ISGMEQTSFL 433
SG++ TS +
Sbjct: 334 ASGLDYTSLI 343
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L LA +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + ++ +KL L VKPA G S GV+++ E Y +A
Sbjct: 161 LTRANRAQFS---------FADVEAKLGLP-LFVKPANQGSSVGVSKVKNEEQ---YHQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDHPQASTCGEIVL--NSEFYAYDTKYIDDQGAQVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCSGMARVDVFLTADN-EVVINEINTLPGFT 323
>gi|374370442|ref|ZP_09628446.1| D-alanine--D-alanine ligase [Cupriavidus basilensis OR16]
gi|373098094|gb|EHP39211.1| D-alanine--D-alanine ligase [Cupriavidus basilensis OR16]
Length = 327
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 155/380 (40%), Gaps = 84/380 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL ++ R ++A+A
Sbjct: 16 KVGVLLGGRSAEREISLLSGNGVLAALR-----------SRGVDAHA------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD L+S+A E A D VF +HGR+GEDG IQ +LE+ VP+ G+G
Sbjct: 52 FDPGLQSVA----------ELATAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK + G T P F + + + + ++VKP R
Sbjct: 102 ASALAMDKQATKRLWTTHGLPT-PRFAMLRDDTDFDAVVAGLGL--------PLIVKPAR 152
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT A + + KA +D+ V+ E F++ G+E T ++ G+ +
Sbjct: 153 EGSSIGLTKVTEAGQMRAAFDKAA-----ALDNDVIAETFID-GAELTCPIVGEGASAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + A ++Y+ KY T Y P P V +R A
Sbjct: 207 LPV--------------IRIVAPGANYDYQNKYF-TDDTQYLCPSGLPDDVEAEVRRLAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ LG +AR D V S++ G ++N GM S +
Sbjct: 252 QSFRVLGCRGWARAD---------VMLSAD--------GKPFLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSNILRTIIGHA 455
A VG S+ + + + A
Sbjct: 295 AARAVGISYEDFVMQVTAAA 314
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 118/296 (39%), Gaps = 74/296 (25%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNHL 687
+LA VFIA+HG GEDGT+Q LLE GVPYTG GV+AS MDK AT L H
Sbjct: 61 ELATAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWTTH- 119
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
G+ T + R + + + L VKPAR+G S G+ ++ A
Sbjct: 120 ---GLPTPRFAMLRDDTDFDAVVAGL---------GLPLIVKPAREGSSIGLTKVTEAGQ 167
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
+ +F +A + +I E F++
Sbjct: 168 MRA---------------AFDKAAAL-------DNDVIAETFIDG--------------- 190
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
E+T ++G+ S +L P + + G + K+ T
Sbjct: 191 ----------AELTCPIVGEGASAEAL-PVIRIVAPGANYDYQNKY-------FTDDTQY 232
Query: 868 IMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + D + + +A L G++R D ++ D G+ ++E+NT PGMT
Sbjct: 233 LCPSGLPDDVEAEVRRLAVQSFRVLGCRGWARADVMLSAD-GKPFLLEMNTSPGMT 287
>gi|336391566|ref|ZP_08572965.1| D-alanine--D-alanine ligase [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 343
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/401 (26%), Positives = 169/401 (42%), Gaps = 90/401 (22%)
Query: 78 LRVGLICGGPSAERGISLNS-------------ARSVLDHIQGDDL-----LVRCYYIDR 119
+++ ++ GG S ER +SL+S A ++D GDDL + +
Sbjct: 1 MKIVVLAGGRSPERNVSLSSGAKITNALREKGHAAVLIDLFLGDDLSDVETIAAVFQRPA 60
Query: 120 NLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDG 179
YAIS +V +N D +S G + DIVF +HG GE+G
Sbjct: 61 PSTDYAISE-EVLTNDAIDALRTTDSK----GLFGPNVLKICGAADIVFLGLHGEDGENG 115
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
+Q L+ + +P+ G+G A +K+ ++KQ LLQ +++N +
Sbjct: 116 KVQATLDLFGIPYTGSGFAASGITMNKH-----LAKQ--------LLQHNQINTARYQTI 162
Query: 240 FVTNKLDPNSG---KVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVE 293
+ P +VVKPT GSSIG+ + +I +L +A D+ VVVE
Sbjct: 163 KAGESV-PQLAFDFPMVVKPTHGGSSIGMEIVPDRPALIAALTEAG-----HFDNEVVVE 216
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 353
++ G EF+ VL+ + LP ++++ D ++Y KY
Sbjct: 217 EYI-AGREFSVGVLNGQA---------LP---------AIEITVADGWYDYEHKY-QDNG 256
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
Y TPP P V +++ A Q LGL ++ RID FL W
Sbjct: 257 ATYQTPPHIPATVHQEMQQMALATMQVLGLTNYGRID--FL------------------W 296
Query: 414 G--TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
TI + N + GM S L Q+A+ VG S++++ II
Sbjct: 297 DGQTIYVIEGNSLPGMTPHSLLPQEAAAVGISYADLCEQII 337
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 686
VF+ +HG GE+G +Q+ L+ G+PYTG G AS M+K L H
Sbjct: 103 VFLGLHGEDGENGKVQATLDLFGIPYTGSGFAASGITMNKHLAKQLLQH 151
>gi|426402564|ref|YP_007021535.1| D-alanine--D-alanine ligase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425859232|gb|AFY00268.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 363
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 146/388 (37%), Gaps = 49/388 (12%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V LI GG SAE +SL SA++V D + D I + + Y V++
Sbjct: 5 VALIFGGKSAEHEVSLRSAKNVADALDKDQFTPVLIGISKEGSWYRFPDMGVFTEATKIV 64
Query: 140 DFKLESLA--------QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
D L S A QG L + VD+ FP +HG GEDG IQ + + +P
Sbjct: 65 DSALPSKAESVALMSLQGKPVLYSLKDQSKTAVDVAFPILHGTMGEDGTIQGLFKMVQLP 124
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
FVG G + DK ++ LL + N+ N V P
Sbjct: 125 FVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKND---YNEIVKQLGSP---- 177
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+KP AGSS+GV D + K K D +V+ E F++G +++
Sbjct: 178 FFIKPANAGSSVGVHKIKTAEDFVVKLKDAF--QFDTKVLAEEFIQGREVECSVM----- 230
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
G + P LP EV Q + ++Y KY+ P +++
Sbjct: 231 GHNHAPKASLPGEVIPQHE----------FYSYEAKYIDDNGALLKIPAELSPETTKAVQ 280
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A +Q +G R+D + P+ G + +IN I G + S
Sbjct: 281 KMAEQTYQAMGCDGLTRVDFFIRPN-----------------GDLYINEINTIPGFTKIS 323
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRF 459
+ G S+ +++ +I +F
Sbjct: 324 MYPKMWEATGLSYKDLISQLIQLGFEKF 351
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 180/461 (39%), Gaps = 116/461 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S NV A + + TP L+ S + S
Sbjct: 5 VALIFGGKSAEHEVSLRSAKNV---ADALDKDQFTPVLIGISKEGS-------------- 47
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P V T+ V +A P +A + + Q
Sbjct: 48 --WYRFPDMGVFTEATKIVDSAL-----PSKAESVALMSLQ------------------- 81
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
P+ +S+ + K A + F +HG +GEDGT+Q L + +P+ G GV +S
Sbjct: 82 ---GKPVLYSLKDQSKTAVD---VAFPILHGTMGEDGTIQGLFKMVQLPFVGCGVWSSAA 135
Query: 674 CMDK--VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
MDK + LA+ + + L + +K D ++E+ +L +KPA
Sbjct: 136 GMDKEIMKRLLAVAKIPNARYLLLTP--HQKND---------YNEIVKQLGS-PFFIKPA 183
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV ++ AED V +K ++F F+ V
Sbjct: 184 NAGSSVGVHKIKTAEDFVVKLK-----------DAFQ-----------------FDTKVL 215
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
+E + + E+ V+G + + +P + + + S E
Sbjct: 216 AEEFI-------------------QGREVECSVMGHNHAPKASLPGEVIPQH-EFYSYEA 255
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ G L P + +S E ++ E A+ +G +R+D F+ NG++ I E
Sbjct: 256 KYIDDNGALLKIP--AELSPETTKAVQKMAEQTYQAMGCDGLTRVDFFIR-PNGDLYINE 312
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+NT+PG T + ++ + E + +++ LG E+F
Sbjct: 313 INTIPGFT--KISMYPKMWEATGLSYKDLISQLIQLGFEKF 351
>gi|422782832|ref|ZP_16835617.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
gi|323976140|gb|EGB71233.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 166/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDANNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRTNRQNISFAEVKS 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEEYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------TSDFYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AITPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 114/285 (40%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R+ + E+ SKL L VKPA G S GV+++ E+ + V
Sbjct: 161 LTRTNRQNIS---------FAEVKSKLGLP-LFVKPANQGSSVGVSKVTSEEEYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--ITPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|437839034|ref|ZP_20846116.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435297894|gb|ELO74152.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 364
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S + +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEIES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QLPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEIESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|429085336|ref|ZP_19148312.1| D-alanine--D-alanine ligase [Cronobacter condimenti 1330]
gi|426545457|emb|CCJ74353.1| D-alanine--D-alanine ligase [Cronobacter condimenti 1330]
Length = 366
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 162/395 (41%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFEVVLLGIDKT-GQWHVNDASRYLLNAD 62
Query: 135 TPADFDF----KLESLAQGFGSLSEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA K +L G S + E +D++FP +HG GEDG +Q +L
Sbjct: 63 NPARIALHRSEKNVALIPGL-SQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+G + DK A + G P L + N + + V +L
Sbjct: 122 MANIPFVGSGVLGSAVSMDKDIAKRLLRDAGLAVAPFITL--TRANRTRYTFEDVKQQL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V D + + L D +VVVE ++ G E
Sbjct: 179 --GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C +V V +F ++Y KY+ Q P
Sbjct: 233 VLGNDAPQASTCGEIV-----VSSEF------------YSYDTKYIDDQAARVVVPADIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 276 PEVNEKIRAIAIRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G + +++ +I A R
Sbjct: 328 YPKLWQAS---------GIGYQDLITRLIELALER 353
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 123/319 (38%), Gaps = 70/319 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DIAKRLLRDAGLAVAP 157
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ + + D+ +L L VKPA G S GV+++
Sbjct: 158 FITLTRANRTRYTFEDVKQQLG-----LPLFVKPANQGSSVGVSKV-------------- 198
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
N ++ H + + ++ E + KG
Sbjct: 199 --------NDEAQYHAAVALAFEFDHKVVVETGI---------------------KGR-- 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI V+G S + V S + S + K+ + P + +
Sbjct: 228 --EIECAVLGNDAPQASTCGEIVV--SSEFYSYDTKYIDDQAARVVVP------ADIAPE 277
Query: 877 CKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
++I IA AL+ G +R+D F+ DN EV+I E+NT+PG T + ++ L +
Sbjct: 278 VNEKIRAIAIRAFQALECAGLARVDVFLTPDN-EVIINEINTLPGFT--NISMYPKLWQA 334
Query: 933 PPMYPHQFFRKVLDLGSER 951
+ ++++L ER
Sbjct: 335 SGIGYQDLITRLIELALER 353
>gi|227824970|ref|ZP_03989802.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|352684899|ref|YP_004896884.1| D-alanine-D-alanine ligase [Acidaminococcus intestini RyC-MR95]
gi|226905469|gb|EEH91387.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|350279554|gb|AEQ22744.1| D-alanine-D-alanine ligase [Acidaminococcus intestini RyC-MR95]
Length = 312
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 144/377 (38%), Gaps = 73/377 (19%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ R+G++ GGPS ER +SLN+ ++++ ++ + Y
Sbjct: 3 KTKRIGVVMGGPSKEREVSLNTGSAIVEALK----------------------EKGYDAV 40
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
P D D L F S E A V +VF +HG +GEDG +Q VLE VP+ G+
Sbjct: 41 PIDLDPSL------FPSQIE-----DAGVKVVFNAVHGLYGEDGRLQAVLEMLGVPYTGS 89
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
G + A +K+ G T L + + + + KL VVK
Sbjct: 90 GVLSSAIAMNKFYTKRMFEANGVKTANCLYLTD---KDRQTAKQDIIRKL---GIPCVVK 143
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P GSSIGVT+ D K + G V+ E F G +++D
Sbjct: 144 PAEQGSSIGVTIVKKEEDLDKALEEAFSYG--KLVLAEAFFTGKEVAAGVMMDSSGNPIA 201
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P+VL+ V+ ++Y KY Y P F + +++E A
Sbjct: 202 MPLVLIEPHVDF--------------YDYHNKYT-KGATTYTCPAPFDECLTKALQEEAV 246
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
++ LG AR+D G + ++N I GM TS + +
Sbjct: 247 KAYKALGCSGVARVDEMV-----------------DAEGNFICLEVNTIPGMTATSLVPK 289
Query: 436 QASKVGFSHSNILRTII 452
A +G S ++ I+
Sbjct: 290 AAKAMGLSFPDLCEKIL 306
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 121/301 (40%), Gaps = 80/301 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----------HL 687
VF AVHG GEDG LQ++LE GVPYTG GV++S M+K T +L
Sbjct: 61 VFNAVHGLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYL 120
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D T +D+ RK L P V VKPA G S GV + ED
Sbjct: 121 TDKDRQTAKQDIIRK---LGIPCV----------------VKPAEQGSSIGVTIVKKEED 161
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
L KALEE +FS ++++ E F F+ +
Sbjct: 162 LD---KALEE--------AFSYG-----------KLVLAEAF-------FTGK------- 185
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
E+ GV+ MP V ++ D K+ G P P
Sbjct: 186 -----------EVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFD 234
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
T+AL ++ AL G +R+D V+ + G + +EVNT+PGMT ++++
Sbjct: 235 ECLTKAL---QEEAVKAYKALGCSGVARVDEMVDAE-GNFICLEVNTIPGMTATSLVPKA 290
Query: 928 A 928
A
Sbjct: 291 A 291
>gi|418042494|ref|ZP_12680690.1| D-ala D-ala ligase [Escherichia coli W26]
gi|425215650|ref|ZP_18610983.1| D-alanine--D-alanine ligase A [Escherichia coli PA23]
gi|383474558|gb|EID66541.1| D-ala D-ala ligase [Escherichia coli W26]
gi|408150455|gb|EKH79037.1| D-alanine--D-alanine ligase A [Escherichia coli PA23]
Length = 364
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVLNEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV++ E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVLNEINTLPGFT 323
>gi|418038577|ref|ZP_12676906.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|354693225|gb|EHE93002.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
CNCM I-1631]
Length = 361
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 177/402 (44%), Gaps = 54/402 (13%)
Query: 63 LEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLN 122
+ D+ ++K+ R + L+ GG SAER +S+ SA SV+ + +V+ Y+I +
Sbjct: 1 MSDKAVSKKGRNMSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGE 60
Query: 123 AYAISSAQVYSNTPADFDFKLES-LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGI 181
Q +++ PA+ + L + LA+ + +S A + A V VFP +HG GEDG I
Sbjct: 61 ---FIKTQEFTDKPAEEEKLLTNDLAESYPKISPAAIYEKAAV--VFPVLHGPMGEDGSI 115
Query: 182 QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
Q LE + +VG + DK A G VP ++ ++ N+ E++ V
Sbjct: 116 QGFLEILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVP-YVAAFADENQGEIAQEVV 174
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGG 299
P V VKP GSS+G++ +D L + + E D+RVV+E ++
Sbjct: 175 EKLEFP----VFVKPANMGSSVGIS----KVDDLADLQPALSEAYKYDNRVVIEQGVD-A 225
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEV--ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357
E VL G+ D LP EV +++F ++Y KY+ ++
Sbjct: 226 REIECAVL--GNNSDVSAT--LPGEVVKDVEF------------YDYNSKYI-DNKIQMD 268
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P + P + ++E A ++ + +R D +F+ T+ G +
Sbjct: 269 IPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCD-FFV----------------TKDGNVY 311
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+IN I G Q S +G S+S+++ ++ A F
Sbjct: 312 LNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETF 353
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 125/333 (37%), Gaps = 88/333 (26%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE + Y GP ++++ + MDK+ LA + +GV
Sbjct: 96 EKAAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMDKL---LAKHVFEAVGV 152
Query: 693 LTINKDVRRKEDLLKTPIV---------DIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+ P V +I E+ KL+ VKPA G S G++++
Sbjct: 153 PQV-------------PYVAAFADENQGEIAQEVVEKLEFPVF-VKPANMGSSVGISKV- 197
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
+DL AL E
Sbjct: 198 --DDLADLQPALSEAY-------------------------------------------- 211
Query: 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK--ESGDILS--LEEKFQGGTGI 859
K +R++ + EI V+G + + +P VK E D S ++ K Q
Sbjct: 212 KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYNSKYIDNKIQMDIPA 271
Query: 860 NLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ A M A+ K A+ G SR D FV D G V + E+N +PG T
Sbjct: 272 KVPADLAQKMQEYAIKAYK--------AVNGTGLSRCDFFVTKD-GNVYLNEINAIPGFT 322
Query: 920 PSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ ++ L E + K++DL E F
Sbjct: 323 QWS--MYPLLWENMGLSYSDLIEKLVDLAKETF 353
>gi|218688244|ref|YP_002396456.1| D-alanyl-alanine synthetase A [Escherichia coli ED1a]
gi|218425808|emb|CAR06614.1| D-alanine-D-alanine ligase A [Escherichia coli ED1a]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 166/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDANNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|338732939|ref|YP_004671412.1| D-alanine--D-alanine ligase [Simkania negevensis Z]
gi|336482322|emb|CCB88921.1| D-alanine--D-alanine ligase [Simkania negevensis Z]
Length = 369
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 53/344 (15%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
+ +RVG++ GG S E ISL SARSV+ ++ + V ID++ + + ++ Q +
Sbjct: 2 AKKIRVGVLFGGQSTEHEISLQSARSVIQNMDPEKYDVVPIGIDKHGSWFFLTLEQFF-- 59
Query: 135 TPADFDFKLESLA-----------QGFGSLSEFAEH--LAANVDIVFPTIHGRFGEDGGI 181
FK E L +G + F L ++D++FP +HG +GEDG +
Sbjct: 60 ----IPFKTEKLPSFQGKEGNLIPEGIQAKDMFFSPCVLRESLDVIFPALHGLYGEDGTV 115
Query: 182 QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
Q +++ N+P VG+ DK A ++ + + +P+FL +L +
Sbjct: 116 QGLVKLANLPCVGSDVLGSALCMDKAIAK-KLMRDAKLPIPAFLCL-------KLHDPIN 167
Query: 242 TNKLDPNSG-KVVVKPTRAGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297
+ G + VKP +GSS+G+ A G++ ++++A D++V++E F++
Sbjct: 168 IPSIIQELGLPLFVKPANSGSSVGINKVHTAEGILGAIEEAF-----QYDEKVILEEFIQ 222
Query: 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357
G E VL + P+V LP E+ Q + ++Y KYL +
Sbjct: 223 -GREIECSVLG-----NLDPIVSLPGEIIPQHE----------FYSYEAKYLDENGAHFK 266
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVF 401
P I + +I++ A F L D AR+D +FL +F
Sbjct: 267 LPAELEIETVQNIQKLAVQAFHLLECEDMARVD-FFLRKDGRIF 309
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 115/294 (39%), Gaps = 74/294 (25%)
Query: 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 691
+E+ +F A+HG GEDGT+Q L++ +P G V+ S CMDK ++A + D
Sbjct: 95 RESLDVIFPALHGLYGEDGTVQGLVKLANLPCVGSDVLGSALCMDK---AIAKKLMRDAK 151
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+ + D + P I EL L VKPA G S G+ ++ AE +
Sbjct: 152 LPIPAFLCLKLHDPINIP--SIIQELGL-----PLFVKPANSGSSVGINKVHTAEGIL-- 202
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
G IE E +I E F++ EI
Sbjct: 203 --------------------GAIEEAFQYDEKVILEEFIQGREI---------------- 226
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------SLEEKFQGGTGINLTPPP 865
+C + +L P V++ G+I+ S E K+ G + P
Sbjct: 227 ---------------ECSVLGNLDPIVSL--PGEIIPQHEFYSYEAKYLDENGAHFKLPA 269
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ E + ++ + L+ E +R+D F+ D G + + E+NT+PG T
Sbjct: 270 E--LEIETVQNIQKLAVQAFHLLECEDMARVDFFLRKD-GRIFLNELNTIPGFT 320
>gi|331651307|ref|ZP_08352332.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli M718]
gi|331051048|gb|EGI23100.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli M718]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSDFYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--NSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|271969210|ref|YP_003343406.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
gi|270512385|gb|ACZ90663.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
Length = 369
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 161/393 (40%), Gaps = 43/393 (10%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS----N 134
RV ++ GG ++E +S+ A SVL I V I ++ S Q Y+
Sbjct: 10 RVAIVFGGRNSEHAVSILGAGSVLGAIDRSKYEVIPIGIAQDGRWVLASGDQRYAIEGDE 69
Query: 135 TPA-DFDFKLESLAQGFGSLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
P+ D +L G GSL + VD+VFP +HG F EDG IQ +LE
Sbjct: 70 LPSVDVQGTGLALPSGGGSLVAYDAGSIPVELGQVDVVFPVMHGPFAEDGTIQGLLEMAG 129
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
V +VG+G A DK + ++ G P +++ + V ++
Sbjct: 130 VRYVGSGVLASAVGMDKAYMKMVLAASGLPVGPYVVIR---DRDWRTDRDRVLKEVQELG 186
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V VKP RAGSS G++ A+ ++ L+ A G E D +V+VE + G A++ +
Sbjct: 187 WPVFVKPARAGSSQGISKAHD-LEELEAAVGFAREH-DPKVLVEAAIAGREIECAVLESL 244
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G G V VR F++ KY+ ++ P P V +
Sbjct: 245 GD-----------EAARASVPGEVLVRGDHEFFDFEAKYI-GDDMSLSVPADIPADVAEN 292
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A F+ LG +R+D ++ T G ++ +IN + G
Sbjct: 293 LRAMAVRAFEALGCEGLSRVDFFY-----------------TADGRLILNEINTMPGFTA 335
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
S Q + G S++ ++ +I A R P L
Sbjct: 336 MSVAPQLWAATGLSYAELVERLIQLALHRSPGL 368
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 117/290 (40%), Gaps = 60/290 (20%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG EDGT+Q LLE GV Y G GV+AS MDK + L L +
Sbjct: 106 VVFPVMHGPFAEDGTIQGLLEMAGVRYVGSGVLASAVGMDKAYMKMVLAASG----LPVG 161
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V ++ +T + E+ + VKPAR G S G+++ E+L V
Sbjct: 162 PYVVIRDRDWRTDRDRVLKEVQE--LGWPVFVKPARAGSSQGISKAHDLEELEAAV---- 215
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
F+R H P++L+ E + EI + +
Sbjct: 216 ---------GFAREH--------DPKVLV-EAAIAGREIECAVLES-------------- 243
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMSTEA 873
+G + S+ V V+ + E K+ G ++L+ P PA + E
Sbjct: 244 --------LGDEAARASVPGEVLVRGDHEFFDFEAKYI-GDDMSLSVPADIPADV--AEN 292
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
L R AL EG SR+D F D G +++ E+NT+PG T +V
Sbjct: 293 LRAMAVR---AFEALGCEGLSRVDFFYTAD-GRLILNEINTMPGFTAMSV 338
>gi|54013449|dbj|BAD60786.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp.
lavendulae]
Length = 345
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 172/394 (43%), Gaps = 73/394 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSV-------------LDHIQGDDLLVRCYYIDRNLNAY 124
+R+ ++CGG S ER +SL S SV +D G+ +L + ++ +
Sbjct: 1 MRIVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGF 60
Query: 125 AISSAQVYSNTPADFDFK--LESLAQGF--GSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
+V PA + + +A F G+L L + D+VF +HG +GEDG
Sbjct: 61 -----EVGKEPPAGHERHGLRQRMAAAFDGGALPA----LLRDADLVFTALHGGWGEDGW 111
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
+QE LE V F G GS AC A++K A ++ G + V L + +E
Sbjct: 112 VQERLEAAGVRFTGAGSTACAAAWNKERAQAVLAAAG-VPVTERALWPAAADE------- 163
Query: 241 VTNKLDP--NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG 298
V ++ P +G VV KP GSS+ V A + + + A + +G D ++VE FL
Sbjct: 164 VPKEVRPLVAAGPVVAKPVADGSSVSVHRADSLAELERLAPQMRADGGD--LLVEPFLS- 220
Query: 299 GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 358
G EFT V+ G PV+ E+EL +F+Y KY P V+
Sbjct: 221 GREFTVGVV----GGQVLPVI----EIEL----------STPLFDYAAKYQPG-AVSEVC 261
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P R P + +++ A + LG H +S ++ + + G +
Sbjct: 262 PARIPEEFASRLQQLALRAHEALGF-------------GPHTYSRADFRCDAA--GEPMC 306
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
++N + G+ TS L AS G++++++ I+
Sbjct: 307 LEVNALPGLTATSLLPLGASGAGWTYADLAERIV 340
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 125/328 (38%), Gaps = 79/328 (24%)
Query: 611 GFDIADELPM---RHSINEWIKLAKENQAT---------VFIAVHGGIGEDGTLQSLLEA 658
GF++ E P RH + + + A + A VF A+HGG GEDG +Q LEA
Sbjct: 59 GFEVGKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEA 118
Query: 659 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 718
GV +TG G A +K A LA GV + L ++ E+
Sbjct: 119 AGVRFTGAGSTACAAAWNK---ERAQAVLAAAGVPVTER------ALWPAAADEVPKEVR 169
Query: 719 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPN 778
+ + KP DG S V R +L E L R+ P RA G
Sbjct: 170 PLVAAGPVVAKPVADGSSVSVHR----------ADSLAE-LERLAPQ--MRADG------ 210
Query: 779 PPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 838
L+ EPF+ E TVGV+G ++P +
Sbjct: 211 ---GDLLVEPFLSGR-------------------------EFTVGVVGG-----QVLPVI 237
Query: 839 TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL--EGFSRI 896
++ S + K+Q G + P + + E + +Q AL +SR
Sbjct: 238 EIELSTPLFDYAAKYQPGAVSEVCP---ARIPEEFASRLQQLALRAHEALGFGPHTYSRA 294
Query: 897 DAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
D F GE + +EVN +PG+T +++L
Sbjct: 295 D-FRCDAAGEPMCLEVNALPGLTATSLL 321
>gi|397656246|ref|YP_006496948.1| D-alanine--D-alanine ligase [Klebsiella oxytoca E718]
gi|402843098|ref|ZP_10891500.1| D-ala D-ala ligase N-terminal domain protein [Klebsiella sp. OBRC7]
gi|394344858|gb|AFN30979.1| D-alanine-D-alanine ligase [Klebsiella oxytoca E718]
gi|402277729|gb|EJU26797.1| D-ala D-ala ligase N-terminal domain protein [Klebsiella sp. OBRC7]
Length = 370
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 164/373 (43%), Gaps = 50/373 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 9 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GQWHINDASNYLLNPQ 67
Query: 138 D--------FDFKLESL----AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
D D L + AQ + ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 68 DPAHIALRPSDITLAQIPGREAQQLIN-ADSGQPLAA-IDVIFPIVHGTLGEDGSLQGML 125
Query: 186 EKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
N+PFVG+ GS AC DK D + + + +++ F+ + N ++S V
Sbjct: 126 RMANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRHQVSFAEVQ 180
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ + ++A + E D +VVVE ++ G E
Sbjct: 181 AKL---GLPLFVKPANQGSSVGVS-KVNSEEQYQQAVALAFE-FDHKVVVEQGIK-GREI 234
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ Q P
Sbjct: 235 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDQGAKVVVPA 277
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
V + IR+ A +Q LG AR+D + + V + T G T ++
Sbjct: 278 AIDSDVNDKIRDIAVRAYQTLGCSGMARVDVFLTADNDVVINEINTLPGFTNIS--MYPK 335
Query: 421 INLISGMEQTSFL 433
+ SG++ TS +
Sbjct: 336 LWQASGLDYTSLI 348
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L L+ +T
Sbjct: 106 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFIT 165
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + E+ +KL L VKPA G S GV+++ E Y +A
Sbjct: 166 LTRANRHQVS---------FAEVQAKLGLP-LFVKPANQGSSVGVSKVNSEEQ---YQQA 212
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 213 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 232
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A + ++
Sbjct: 233 ----EIECAVLGNDNPQASTCGEIVL--NSEFYAYDTKYIDDQGAKVVVPAA--IDSDVN 284
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN +V+I E+NT+PG T
Sbjct: 285 DKIRDIAVRAYQTLGCSGMARVDVFLTADN-DVVINEINTLPGFT 328
>gi|227495857|ref|ZP_03926168.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
gi|226834614|gb|EEH66997.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
Length = 404
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 166/410 (40%), Gaps = 57/410 (13%)
Query: 69 AKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDR 119
A EA R RV ++ GG S E IS +A VL I D V + +D
Sbjct: 26 ASEAGVARKPRVAVVFGGRSGEHTISCATAAGVLSAIDRDRFDVLPVGITLDGQWLLVDD 85
Query: 120 NLNAYAISSAQVYSNTPADFDFKLESLAQG----------FGSLSEFAEHLAANVDIVFP 169
+ A A+ ++ + E L +G F +++ + VD+V P
Sbjct: 86 DPAALALDESR------PPVEITAEGLGRGELAMRLGGGAFTAVTPTGPKVLGEVDVVLP 139
Query: 170 TIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229
+HG +GEDG IQ +LE ++P+VG G A DK + ++ G T ++
Sbjct: 140 LLHGPYGEDGTIQGMLEMLDIPYVGCGVLASAAGMDKQVTKVLLNAAGIPTAQHVVVHPH 199
Query: 230 EVN-ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD 288
+ E EL + + + + + VKP RAGSS+G+T D L A E +D
Sbjct: 200 RWDSEREL----ILDACEALTYPLFVKPARAGSSLGITKVERRED-LPAAIEAARE-VDP 253
Query: 289 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY 348
+V+VE +E G E VLD G P V P E+ + ++Y KY
Sbjct: 254 KVLVESGVE-GREVEVAVLDGHHG--AAPRVAEPGEIVMDAS-----HGAGEFYDYETKY 305
Query: 349 LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKY 408
L V P R ++E A+ F+ LG R+D + P V + T
Sbjct: 306 LAHDAVQMVCPARVSHQESELLKETAARAFEALGGEGLMRVDFFLTPRGEAVVNEVNTMP 365
Query: 409 GSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G FT ++ M Q S G S+++++ +I A R
Sbjct: 366 G--------FTPFSMYPYMWQVS---------GLSYTDLVSELIELALER 398
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q +LE +PY G GV+AS MDK T + LN G+ T
Sbjct: 137 VLPLLHGPYGEDGTIQGMLEMLDIPYVGCGVLASAAGMDKQVTKVLLNA---AGIPTAQH 193
Query: 698 DV--RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
V + D + I+D LT L VKPAR G S G+ ++ EDL ++A
Sbjct: 194 VVVHPHRWDSERELILDACEALTYP-----LFVKPARAGSSLGITKVERREDLPAAIEAA 248
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
E P++L+ E VE E+ + + A + +
Sbjct: 249 REV---------------------DPKVLV-ESGVEGREVEVAVLDGHHGAAPRVAEPGE 286
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
++ + G +G+ E K+ + + P + +S + +
Sbjct: 287 IVMDASHG-------------------AGEFYDYETKYLAHDAVQMVCP--ARVSHQESE 325
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
K+ AL EG R+D F+ GE ++ EVNT+PG TP
Sbjct: 326 LLKETAARAFEALGGEGLMRVDFFLT-PRGEAVVNEVNTMPGFTP 369
>gi|423101530|ref|ZP_17089232.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5242]
gi|376391318|gb|EHT03997.1| D-alanine-D-alanine ligase A [Klebsiella oxytoca 10-5242]
Length = 365
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 164/373 (43%), Gaps = 50/373 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GQWHINDASNYLLNPQ 62
Query: 138 D--------FDFKLESL----AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
D D L + AQ + ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSDITLAQIPGREAQQLIN-ADSGQPLAA-IDVIFPIVHGTLGEDGSLQGML 120
Query: 186 EKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
N+PFVG+ GS AC DK D + + + +++ F+ + N ++S V
Sbjct: 121 RMANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRHQVSFAEVQ 175
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ + ++A + E D +VVVE ++ G E
Sbjct: 176 AKL---GLPLFVKPANQGSSVGVS-KVNSEEQYQQAVALAFE-FDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ Q P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDQGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
V + IR+ A +Q LG AR+D + + V + T G T ++
Sbjct: 273 AIDSDVNDKIRDIAVRAYQTLGCSGMARVDVFLTADNDVVINEINTLPGFTNIS--MYPK 330
Query: 421 INLISGMEQTSFL 433
+ SG++ TS +
Sbjct: 331 LWQASGLDYTSLI 343
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L L+ +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + E+ +KL L VKPA G S GV+++ E Y +A
Sbjct: 161 LTRANRHQVS---------FAEVQAKLGLP-LFVKPANQGSSVGVSKVNSEEQ---YQQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A + ++
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--NSEFYAYDTKYIDDQGAKVVVPAA--IDSDVN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN +V+I E+NT+PG T
Sbjct: 280 DKIRDIAVRAYQTLGCSGMARVDVFLTADN-DVVINEINTLPGFT 323
>gi|417503731|ref|ZP_12174046.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|353651993|gb|EHC93948.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHVFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QLPSGVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R V + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRH---------VFSFAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
>gi|375099364|ref|ZP_09745627.1| D-alanine--D-alanine ligase [Saccharomonospora cyanea NA-134]
gi|374660096|gb|EHR59974.1| D-alanine--D-alanine ligase [Saccharomonospora cyanea NA-134]
Length = 365
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 168/404 (41%), Gaps = 60/404 (14%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS-- 133
R RV ++ GG S E IS SA S+L ++ D + + R + + ++ +
Sbjct: 4 RKTRVAVVFGGRSTEHTISCVSAGSILANLDPDRFEIVPIGVTRA-GGWVLGTSDPETLR 62
Query: 134 ----NTPADFDFKLESLAQ-----GFGSLS--EFAEHLAANVDIVFPTIHGRFGEDGGIQ 182
PA D K LA G SL+ E AE L+A VD+VFP +HG FGEDG IQ
Sbjct: 63 IRGRELPAVEDGKALVLAPDPTTGGVVSLAPGERAEVLSA-VDVVFPVLHGAFGEDGTIQ 121
Query: 183 EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF-ITVPSFLLQGSEVNESELSNWFV 241
+LE ++P+VG G A A DK A ++ +G + + + +G + +E
Sbjct: 122 GLLELADLPYVGAGVFASAAAMDKEYAKKLLAAEGLEVGRYAVVRRGQQTLPAEERERL- 180
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL-EGIDDRVVVELFLEGGS 300
V VKP RAGSSIG++ V D + I L D +V+VE
Sbjct: 181 -------GLPVFVKPARAGSSIGISR---VTDWARLDAAIALARETDPKVLVE------- 223
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDV--REKDAIFNYRRKYLPTQQVAYHT 358
VG +C + VE V V + DA +++ KYL +
Sbjct: 224 -----AETVGREIECGVLEFPDGRVEASLPAEVRVLSDDTDAWYDFETKYL-GEDAELDI 277
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P + V +RE A F L AR+D +F+ + GT+
Sbjct: 278 PAKLDDTVTERLREAAVRAFGALDCQGLARVD-FFVGAD----------------GTLTV 320
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
++N + G TS + G + +L T+I A +R L
Sbjct: 321 NEVNTMPGFTATSAYPKMWEVTGIDYPTLLTTLIETALARGTGL 364
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 115/291 (39%), Gaps = 69/291 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LLE +PY G GV AS MDK A L ++G +
Sbjct: 106 VFPVLHGAFGEDGTIQGLLELADLPYVGAGVFASAAAMDKEYAKKLLAAEGLEVGRYAV- 164
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
VRR + L E +L VKPAR G S G++R+
Sbjct: 165 --VRRGQQTLPA-------EERERLGLPVF-VKPARAGSSIGISRV-------------- 200
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD-EILFSSQSTNKNADRLMWKGNS 815
++R I + ETD ++L +++ +
Sbjct: 201 --------TDWARLDAAIALAR------------ETDPKVLVEAETVGR----------- 229
Query: 816 RWVEITVGVIG-KCGSMHSLMPS---VTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
EI GV+ G + + +P+ V ++ E K+ G P T
Sbjct: 230 ---EIECGVLEFPDGRVEASLPAEVRVLSDDTDAWYDFETKYLGEDAELDIPAKLDDTVT 286
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
E L + R AL +G +R+D FV D G + + EVNT+PG T ++
Sbjct: 287 ERLREAAVR---AFGALDCQGLARVDFFVGAD-GTLTVNEVNTMPGFTATS 333
>gi|290510033|ref|ZP_06549403.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
gi|289776749|gb|EFD84747.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
Length = 369
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 169/395 (42%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y +
Sbjct: 8 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQ-GLWHINDAGNYLLNAQ 66
Query: 135 TPADFDFKLES--LAQGFGSLSE------FAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + + LAQ G ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 67 DPARIALRPSTVTLAQIPGREAQQLINADSGQPLAA-IDVIFPIVHGTLGEDGSLQGMLR 125
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK + G P L + N ++ S V
Sbjct: 126 MANLPFVGSDVLGSAAC---MDKDVTKRLLRDAGLAVAPFITL--TRANRAQFSFADVEA 180
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + +A + E D +VVVE ++ G E
Sbjct: 181 KL---GLPLFVKPANQGSSVGVSKVKNE-EQYHQAVALAFE-FDHKVVVEQGIK-GREIE 234
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + + Y KY+ Q P
Sbjct: 235 CAVL----GND-HPQASTCGEIVLNSE----------FYAYDTKYIDDQGAQVVVPAAIA 279
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D VF ++E + ++ +IN
Sbjct: 280 PEINDKIRAIAVQAYQTLGCSGMARVD---------VFLTAENE--------VVINEINT 322
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + G +++++ +I A R
Sbjct: 323 LPGFTNISMYPKLWQASGLDYTSLITRLIELALER 357
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L LA +T
Sbjct: 105 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFIT 164
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + ++ +KL L VKPA G S GV+++ E Y +A
Sbjct: 165 LTRANRAQFS---------FADVEAKLGLP-LFVKPANQGSSVGVSKVKNEEQ---YHQA 211
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 212 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 231
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++ E
Sbjct: 232 ----EIECAVLGNDHPQASTCGEIVL--NSEFYAYDTKYIDDQGAQVVVPAA--IAPEIN 283
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 284 DKIRAIAVQAYQTLGCSGMARVDVFLTAEN-EVVINEINTLPGFT 327
>gi|152968896|ref|YP_001334005.1| D-alanyl-alanine synthetase A [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|262042385|ref|ZP_06015547.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330006858|ref|ZP_08305734.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
gi|378977220|ref|YP_005225361.1| D-alanyl-alanine synthetase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|402782194|ref|YP_006637740.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|421908590|ref|ZP_16338425.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421915584|ref|ZP_16345182.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424934871|ref|ZP_18353243.1| D-alanine--D-alanine ligase 2 [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|428149036|ref|ZP_18996871.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|150953745|gb|ABR75775.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|259040293|gb|EEW41402.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328535701|gb|EGF62146.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
gi|364516631|gb|AEW59759.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|402543056|gb|AFQ67205.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|407809058|gb|EKF80309.1| D-alanine--D-alanine ligase 2 [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410117381|emb|CCM81050.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410122093|emb|CCM87807.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|427541012|emb|CCM93009.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 376
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 161/370 (43%), Gaps = 44/370 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y +
Sbjct: 15 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQ-GLWHINDAGNYLLNAQ 73
Query: 135 TPADFDFKLES--LAQGFGSLS------EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + + LAQ G + E + LAA +D++FP +HG GEDG +Q +L
Sbjct: 74 DPARIALRPSTVTLAQIPGREAQQLINAESGQPLAA-IDVIFPIVHGTLGEDGSLQGMLR 132
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK + G P L + N ++ S V
Sbjct: 133 MANLPFVGSDVLGSAAC---MDKDVTKRLLRDAGLAVAPFITL--TRANRAQFSFADVEA 187
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + +A + E D +VVVE ++ G E
Sbjct: 188 KL---GLPLFVKPANQGSSVGVSKVKNE-EQYHQAVALAFE-FDHKVVVEQGIK-GREIE 241
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + + Y KY+ Q P
Sbjct: 242 CAVL----GND-HPQASTCGEIVLNSE----------FYAYDTKYIDDQGAQVVVPAAIA 286
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + + V + T G T ++ +
Sbjct: 287 PEINDKIRAIAVQAYQTLGCSGMARVDVFLTADNEVVINEINTLPGFTNIS--MYPKLWQ 344
Query: 424 ISGMEQTSFL 433
SG++ TS +
Sbjct: 345 ASGLDYTSLI 354
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L LA +T
Sbjct: 112 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFIT 171
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + ++ +KL L VKPA G S GV+++ E Y +A
Sbjct: 172 LTRANRAQFS---------FADVEAKLGLP-LFVKPANQGSSVGVSKVKNEEQ---YHQA 218
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 219 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 238
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++ E
Sbjct: 239 ----EIECAVLGNDHPQASTCGEIVL--NSEFYAYDTKYIDDQGAQVVVPAA--IAPEIN 290
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 291 DKIRAIAVQAYQTLGCSGMARVDVFLTADN-EVVINEINTLPGFT 334
>gi|74310948|ref|YP_309367.1| D-alanyl-alanine synthetase A [Shigella sonnei Ss046]
gi|420362051|ref|ZP_14862977.1| D-alanine-D-alanine ligase A [Shigella sonnei 4822-66]
gi|73854425|gb|AAZ87132.1| D-alanine-D-alanine ligase A [Shigella sonnei Ss046]
gi|391296978|gb|EIQ55054.1| D-alanine-D-alanine ligase A [Shigella sonnei 4822-66]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALKR 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|337267825|ref|YP_004611880.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
gi|336028135|gb|AEH87786.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
Length = 368
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 156/390 (40%), Gaps = 48/390 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
+RV ++ GG SAE +S SA +VL I V I R+ S++ +
Sbjct: 5 IRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWLLQPSSEAGVDGAG 64
Query: 135 TPADFD-FKLESLAQGFGSLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
P D ++ L G G L + + VD+VFP +HG FGEDG +Q E +
Sbjct: 65 APVSGDGVEVALLPGGKGRLVAVPQAGVRPDLSPVDVVFPVLHGPFGEDGSVQGYAEVAD 124
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN 248
V +VG G A A DK A M + G S +L+G + E++
Sbjct: 125 VAYVGCGILASAAAMDKDVAKRLMREAGLAVARSVTVLRGDVCSFQEIAGALGL------ 178
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
KP R GSS GV+ D ++A L D +V++E F+E G E VL
Sbjct: 179 --PFFAKPARQGSSFGVSKVKDR-DGFEQAVETALR-YDSKVLIEEFVE-GREIECSVLQ 233
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G + + G + K + Y KY P P V
Sbjct: 234 RADG-----------SLTVSLPGEIIPAGKHGFYTYEAKYFDADGAVVKVPADVPAGVAG 282
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+E A+ F+ LG AR+D +FL + G++L ++N + G
Sbjct: 283 KAKEMAAQAFRALGCEAMARVD-FFLRAD----------------GSLLVNEVNTLPGFT 325
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + +G +S ++ +I HA +R
Sbjct: 326 DISMYAKALAAIGIGYSQVIDVLIEHALAR 355
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 115/294 (39%), Gaps = 80/294 (27%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG++Q E V Y G G++AS MDK +A + + G+
Sbjct: 101 VVFPVLHGPFGEDGSVQGYAEVADVAYVGCGILASAAAMDK---DVAKRLMREAGLA--- 154
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V R +L+ + + E+ L KPAR G S GV+++ +D + +A+E
Sbjct: 155 --VARSVTVLRGDVCS-FQEIAGALGLPFFA-KPARQGSSFGVSKV---KDRDGFEQAVE 207
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
L ++LI E FVE EI
Sbjct: 208 TAL------------------RYDSKVLI-EEFVEGREI--------------------- 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDIL--------SLEEKFQGGTGINLTPP---P 865
+C + S+TV G+I+ + E K+ G + P P
Sbjct: 228 ----------ECSVLQRADGSLTVSLPGEIIPAGKHGFYTYEAKYFDADGAVVKVPADVP 277
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
A + K K+ AL E +R+D F+ D G +L+ EVNT+PG T
Sbjct: 278 AGVAG-----KAKEMAAQAFRALGCEAMARVDFFLRAD-GSLLVNEVNTLPGFT 325
>gi|432635696|ref|ZP_19871582.1| D-alanine-D-alanine ligase A [Escherichia coli KTE81]
gi|431173978|gb|ELE74039.1| D-alanine-D-alanine ligase A [Escherichia coli KTE81]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 166/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AISPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A +S E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--ISPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|415814534|ref|ZP_11506132.1| D-alanine--D-alanine ligase [Escherichia coli LT-68]
gi|323170460|gb|EFZ56110.1| D-alanine--D-alanine ligase [Escherichia coli LT-68]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 166/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPS 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPSA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|399007452|ref|ZP_10709960.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM17]
gi|398119996|gb|EJM09666.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM17]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 164/394 (41%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
LRVG+I GG SAE +SL SAR+++D + + ID+N + + ++ N
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSARNIVDALDRERFEPVLIGIDKNGHWHLNDTSNFLINQEN 63
Query: 136 PADFDFKLE----SLAQGFGS---LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA ++ G S L ++ L +VD++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNRSNRELAVVPGKASQQLLETSSQELLGHVDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK + + G P L + ++ + +KL
Sbjct: 124 DLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFITLNRATAARTDFA--LAQSKL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTA 304
+ VKP GSS+GV+ V + + I L G D++V+VE + G E
Sbjct: 179 GL---PMFVKPANQGSSVGVS---KVTSAAEYHAAIELALGFDEKVLVESAVS-GREIEC 231
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G D P+ G ++ ++Y KY+ Q P
Sbjct: 232 AVL----GND-QPIA----------SGCGEIVVGSGFYSYDSKYIDDQAAQVVVPADLNE 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V IR A FQ LG AR+D + T+ G +L +IN +
Sbjct: 277 EVSERIRTLAVEAFQVLGCSGLARVDVFL-----------------TQGGEVLINEINSL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G ++S ++ +I A R
Sbjct: 320 PGFTRISMYPKLWQAAGMTYSELVSRLIELALER 353
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG LQ LL +P+ G V+ S CMDK I+
Sbjct: 101 VIFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAVCMDK----------------DIS 144
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKL-----QCKT---LCVKPARDGCSTGVARLCCAEDL 748
K + R L TP + + ++ Q K + VKPA G S GV+++ A +
Sbjct: 145 KRLLRDAGLAVTPFITLNRATAARTDFALAQSKLGLPMFVKPANQGSSVGVSKVTSAAE- 203
Query: 749 TVYVKALEECL 759
Y A+E L
Sbjct: 204 --YHAAIELAL 212
>gi|218703662|ref|YP_002411181.1| D-alanyl-alanine synthetase A [Escherichia coli UMN026]
gi|293403498|ref|ZP_06647589.1| ddl [Escherichia coli FVEC1412]
gi|298379109|ref|ZP_06988990.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302]
gi|300900436|ref|ZP_07118606.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
gi|331661753|ref|ZP_08362676.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA143]
gi|417585169|ref|ZP_12235949.1| D-alanine--D-alanine ligase [Escherichia coli STEC_C165-02]
gi|419937175|ref|ZP_14454088.1| D-alanyl-alanine synthetase A [Escherichia coli 576-1]
gi|432352043|ref|ZP_19595352.1| D-alanine-D-alanine ligase A [Escherichia coli KTE2]
gi|432400491|ref|ZP_19643251.1| D-alanine-D-alanine ligase A [Escherichia coli KTE26]
gi|432429529|ref|ZP_19671989.1| D-alanine-D-alanine ligase A [Escherichia coli KTE181]
gi|432459351|ref|ZP_19701515.1| D-alanine-D-alanine ligase A [Escherichia coli KTE204]
gi|432474399|ref|ZP_19716412.1| D-alanine-D-alanine ligase A [Escherichia coli KTE208]
gi|432492676|ref|ZP_19734515.1| D-alanine-D-alanine ligase A [Escherichia coli KTE213]
gi|432521017|ref|ZP_19758182.1| D-alanine-D-alanine ligase A [Escherichia coli KTE228]
gi|432541234|ref|ZP_19778109.1| D-alanine-D-alanine ligase A [Escherichia coli KTE235]
gi|432629950|ref|ZP_19865900.1| D-alanine-D-alanine ligase A [Escherichia coli KTE80]
gi|432639499|ref|ZP_19875344.1| D-alanine-D-alanine ligase A [Escherichia coli KTE83]
gi|432664568|ref|ZP_19900164.1| D-alanine-D-alanine ligase A [Escherichia coli KTE116]
gi|432773560|ref|ZP_20007850.1| D-alanine-D-alanine ligase A [Escherichia coli KTE54]
gi|432837929|ref|ZP_20071422.1| D-alanine-D-alanine ligase A [Escherichia coli KTE140]
gi|432884346|ref|ZP_20099302.1| D-alanine-D-alanine ligase A [Escherichia coli KTE158]
gi|432910066|ref|ZP_20117193.1| D-alanine-D-alanine ligase A [Escherichia coli KTE190]
gi|433017336|ref|ZP_20205607.1| D-alanine-D-alanine ligase A [Escherichia coli KTE105]
gi|433051629|ref|ZP_20238870.1| D-alanine-D-alanine ligase A [Escherichia coli KTE122]
gi|433066588|ref|ZP_20253432.1| D-alanine-D-alanine ligase A [Escherichia coli KTE128]
gi|433157323|ref|ZP_20342199.1| D-alanine-D-alanine ligase A [Escherichia coli KTE177]
gi|433176826|ref|ZP_20361293.1| D-alanine-D-alanine ligase A [Escherichia coli KTE82]
gi|433201801|ref|ZP_20385613.1| D-alanine-D-alanine ligase A [Escherichia coli KTE95]
gi|218430759|emb|CAR11633.1| D-alanine-D-alanine ligase A [Escherichia coli UMN026]
gi|291429351|gb|EFF02371.1| ddl [Escherichia coli FVEC1412]
gi|298280222|gb|EFI21726.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302]
gi|300356082|gb|EFJ71952.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
gi|331060175|gb|EGI32139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA143]
gi|345341394|gb|EGW73799.1| D-alanine--D-alanine ligase [Escherichia coli STEC_C165-02]
gi|388398212|gb|EIL59142.1| D-alanyl-alanine synthetase A [Escherichia coli 576-1]
gi|430880676|gb|ELC03951.1| D-alanine-D-alanine ligase A [Escherichia coli KTE2]
gi|430929211|gb|ELC49722.1| D-alanine-D-alanine ligase A [Escherichia coli KTE26]
gi|430947364|gb|ELC67062.1| D-alanine-D-alanine ligase A [Escherichia coli KTE181]
gi|430992435|gb|ELD08806.1| D-alanine-D-alanine ligase A [Escherichia coli KTE204]
gi|431010339|gb|ELD24687.1| D-alanine-D-alanine ligase A [Escherichia coli KTE208]
gi|431013082|gb|ELD26816.1| D-alanine-D-alanine ligase A [Escherichia coli KTE213]
gi|431045571|gb|ELD55801.1| D-alanine-D-alanine ligase A [Escherichia coli KTE228]
gi|431064488|gb|ELD73355.1| D-alanine-D-alanine ligase A [Escherichia coli KTE235]
gi|431174469|gb|ELE74514.1| D-alanine-D-alanine ligase A [Escherichia coli KTE80]
gi|431185074|gb|ELE84804.1| D-alanine-D-alanine ligase A [Escherichia coli KTE83]
gi|431204636|gb|ELF03194.1| D-alanine-D-alanine ligase A [Escherichia coli KTE116]
gi|431320681|gb|ELG08311.1| D-alanine-D-alanine ligase A [Escherichia coli KTE54]
gi|431391832|gb|ELG75436.1| D-alanine-D-alanine ligase A [Escherichia coli KTE140]
gi|431419934|gb|ELH02268.1| D-alanine-D-alanine ligase A [Escherichia coli KTE158]
gi|431447141|gb|ELH27883.1| D-alanine-D-alanine ligase A [Escherichia coli KTE190]
gi|431537506|gb|ELI13623.1| D-alanine-D-alanine ligase A [Escherichia coli KTE105]
gi|431576038|gb|ELI48752.1| D-alanine-D-alanine ligase A [Escherichia coli KTE122]
gi|431591123|gb|ELI62123.1| D-alanine-D-alanine ligase A [Escherichia coli KTE128]
gi|431682009|gb|ELJ47778.1| D-alanine-D-alanine ligase A [Escherichia coli KTE177]
gi|431710531|gb|ELJ74905.1| D-alanine-D-alanine ligase A [Escherichia coli KTE82]
gi|431726317|gb|ELJ90127.1| D-alanine-D-alanine ligase A [Escherichia coli KTE95]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDTQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|94676718|ref|YP_588832.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
gi|166198474|sp|Q1LT82.1|DDL_BAUCH RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|94219868|gb|ABF14027.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
Length = 375
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 167/402 (41%), Gaps = 71/402 (17%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I GG SAE +SL SA+++++ I + V + ID+ Q + N
Sbjct: 4 LRVGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDK--------EGQWHINNKL 55
Query: 138 DFDFKLESLAQGFGSLSEFAEHLA-------------------ANVDIVFPTIHGRFGED 178
++ E+ + + +L++ +H+A +D++FP +HG GED
Sbjct: 56 NYLIYGEN--ETYIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGED 113
Query: 179 GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238
G +Q +L N+PFVG+ + DK A + PS L + +N S
Sbjct: 114 GNLQGLLRMANLPFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITL--TRINRENFSY 171
Query: 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLE 297
+ L + VKP GSS+GV+ VI+ + + + L DD+V+VE +
Sbjct: 172 DQIITYL---GSSLFVKPANQGSSVGVS---KVINRISFDQALALAFCFDDKVLVESAI- 224
Query: 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357
G E VL + P L E+ L D ++Y +KYL
Sbjct: 225 NGRELECAVLG-----NHDPQASLCGEIVL----------SDNFYSYEKKYLNEHGAVVV 269
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P V N+I++ A FQ L AR+D + ++ + + T G
Sbjct: 270 VPAAISKEVSNNIQKIAVRAFQALNCTGMARVDVFLTTNNKVLVNEVNTSPG-------- 321
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
FT I++ + Q S G S+ ++ +I A R+
Sbjct: 322 FTSISMYPKLWQAS---------GISYPALITRLIELAIERY 354
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 145/359 (40%), Gaps = 96/359 (26%)
Query: 604 KKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPY 663
+KH F D+ ++L ++L +F VHG +GEDG LQ LL +P+
Sbjct: 82 RKHDQFIQIDMLEQL---------VQLD-----VIFPIVHGTLGEDGNLQGLLRMANLPF 127
Query: 664 TGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------W 714
G V+ S MDK I K + R DL TP + + +
Sbjct: 128 VGSTVLGSAVSMDK----------------DIAKRLLRDADLEVTPSITLTRINRENFSY 171
Query: 715 HELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMI 774
++ + L +L VKPA G S GV+++ + RI SF +A +
Sbjct: 172 DQIITYL-GSSLFVKPANQGSSVGVSKV----------------INRI---SFDQALAL- 210
Query: 775 EMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 834
F D++L S + E+ V+G SL
Sbjct: 211 -------------AFCFDDKVLVESAINGR--------------ELECAVLGNHDPQASL 243
Query: 835 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGF 893
+ + S + S E+K+ G + P A +S E + Q+I + A AL G
Sbjct: 244 CGEIVL--SDNFYSYEKKYLNEHGAVVVVPAA--ISKEVSNNI-QKIAVRAFQALNCTGM 298
Query: 894 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+R+D F+ +N +VL+ EVNT PG T ++ ++ L + + ++++L ER+
Sbjct: 299 ARVDVFLTTNN-KVLVNEVNTSPGFT--SISMYPKLWQASGISYPALITRLIELAIERY 354
>gi|375259265|ref|YP_005018435.1| D-alanine--D-alanine ligase [Klebsiella oxytoca KCTC 1686]
gi|365908743|gb|AEX04196.1| D-alanine--D-alanine ligase A [Klebsiella oxytoca KCTC 1686]
Length = 365
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 164/373 (43%), Gaps = 50/373 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GQWHINDASNYLLNPQ 62
Query: 138 D--------FDFKLESL----AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
D D L + AQ + ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSDITLAQIPGREAQQLIN-ADSGQPLAA-IDVIFPIVHGTLGEDGSLQGML 120
Query: 186 EKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
N+PFVG+ GS AC DK D + + + +++ F+ + N ++S V
Sbjct: 121 RMANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRHQVSFAEVQ 175
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ + ++A + E D +VVVE ++ G E
Sbjct: 176 AKL---GLPLFVKPANQGSSVGVS-KVNSEEQYQQAVALAFE-FDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ Q P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDQGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
V + IR+ A +Q LG AR+D + + V + T G T ++
Sbjct: 273 AIDSDVNDKIRDIAVRAYQTLGCSGMARVDVFLTADNDVVINEINTLPGFTNIS--MYPK 330
Query: 421 INLISGMEQTSFL 433
+ SG++ TS +
Sbjct: 331 LWQASGLDYTSLI 343
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L L+ +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + E+ +KL L VKPA G S GV+++ E Y +A
Sbjct: 161 LTRANRHQVS---------FAEVQAKLGLP-LFVKPANQGSSVGVSKVNSEEQ---YQQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A + ++
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--NSEFYAYDTKYIDDQGAKVVVPAA--IDSDVN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN +V+I E+NT+PG T
Sbjct: 280 DKIRDIAVRAYQTLGCSGMARVDVFLTADN-DVVINEINTLPGFT 323
>gi|417688133|ref|ZP_12337379.1| D-alanine--D-alanine ligase [Shigella boydii 5216-82]
gi|332094526|gb|EGI99572.1| D-alanine--D-alanine ligase [Shigella boydii 5216-82]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRTNRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRTNRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|403718460|ref|ZP_10943336.1| D-alanine--D-alanine ligase [Kineosphaera limosa NBRC 100340]
gi|403208481|dbj|GAB98019.1| D-alanine--D-alanine ligase [Kineosphaera limosa NBRC 100340]
Length = 372
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 161/404 (39%), Gaps = 69/404 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDRNLNAYAISSA 129
RV ++ GG S+E +S +A V+ I V R + +L A+
Sbjct: 9 RVAVVFGGRSSEHAVSCATAAGVMAAIDRTRYEVLPIGIAPNGRWVLFEDDLETLALKPG 68
Query: 130 QVYSNTPADFDFKLESLAQGFGSLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVL 185
V + + L LA G SL+ +A ++D+VFP +HG FGEDG IQ +L
Sbjct: 69 HVPQVIAGEAEVVL-PLATGDHSLTSVRPGVAPVDLGDIDVVFPLLHGPFGEDGTIQGLL 127
Query: 186 EKYNVPFVGTGSRACRQAFDKY-------DASLEMSKQGFITVPSFLLQGSEVNESELS- 237
E ++P+VG+G A DK+ A L + IT +L E E +
Sbjct: 128 ELADIPYVGSGVLASAVMMDKHYMKLVFAAAELPVGPYVVITDKQWLTDSDECEERVAAL 187
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI---DDRVVVEL 294
W V VKP RAGSS+G++ S + + +E D +V+VE
Sbjct: 188 GW-----------PVFVKPCRAGSSVGISRV-----SRPEELNLAIERAREHDPKVIVEA 231
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
+ G I+ G+ D EL G + V + +++ KYL V
Sbjct: 232 AIFGREIECGILQGRGTAPD--------RASEL---GEIVVSQDHEFYDFEAKYLAEADV 280
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P + P I++ A F G AR+D ++ T G
Sbjct: 281 RLSCPAQLPTPDTEWIKQMALTAFTAAGCEGLARVDFFY-----------------TTEG 323
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ +IN + G TS Q + G S+S+++ +I A R
Sbjct: 324 DVILNEINTMPGFTPTSMYPQMWAATGISYSDLITELIELARHR 367
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 115/290 (39%), Gaps = 61/290 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTIN 696
VF +HG GEDGT+Q LLE +PY G GV+AS MDK L +G +
Sbjct: 109 VFPLLHGPFGEDGTIQGLLELADIPYVGSGVLASAVMMDKHYMKLVFAAAELPVGPYVVI 168
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
D + D D E + L VKP R G S G++R+ E+L + ++
Sbjct: 169 TDKQWLTD------SDECEERVAALGWPVF-VKPCRAGSSVGISRVSRPEELNLAIER-- 219
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+R H +P V + +F
Sbjct: 220 -----------AREH---------------DPKVIVEAAIFGR----------------- 236
Query: 817 WVEITVGVI---GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
EI G++ G S + + V + + E K+ + L+ P + + T
Sbjct: 237 --EIECGILQGRGTAPDRASELGEIVVSQDHEFYDFEAKYLAEADVRLSCP--AQLPTPD 292
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
+ KQ A EG +R+D F + G+V++ E+NT+PG TP+++
Sbjct: 293 TEWIKQMALTAFTAAGCEGLARVDFFYTTE-GDVILNEINTMPGFTPTSM 341
>gi|425286936|ref|ZP_18677871.1| D-alanine--D-alanine ligase A [Escherichia coli 3006]
gi|408218870|gb|EKI43052.1| D-alanine--D-alanine ligase A [Escherichia coli 3006]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQMLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 112/286 (39%), Gaps = 66/286 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---L 693
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFI 159
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 160 TLTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD 209
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
L F E D + Q KG
Sbjct: 210 ------------------------------LAF----EFDHKVIVEQGI---------KG 226
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 227 R----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEI 278
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 279 NDKIRAIAVQAYQMLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|383787413|ref|YP_005471982.1| D-alanine--D-alanine ligase [Fervidobacterium pennivorans DSM 9078]
gi|383110260|gb|AFG35863.1| D-alanine--D-alanine ligase [Fervidobacterium pennivorans DSM 9078]
Length = 311
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 154/380 (40%), Gaps = 87/380 (22%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++ ++ GG S ER IS+ S + + ++ + +T
Sbjct: 1 MKIAVLLGGISREREISIRSGKRIAQALKN------------------------FGHTVD 36
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+ DF L F + L N D++F +HG FGEDG +Q +L+ VP+ G+
Sbjct: 37 EIDFTLS-----------FMDKLKQLRNYDVIFNILHGTFGEDGHLQAILDSVGVPYTGS 85
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV--- 252
G AFDKY +L + ++VP F+L + F+ N + V
Sbjct: 86 GMETSVIAFDKYICNLYV--HDIVSVPRFILLPKQ--------EFIQNGIQRVKEVVGMP 135
Query: 253 -VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
V+KP + GSSIG + + L +A + ++ +V E G+E T ++D+
Sbjct: 136 CVIKPRKEGSSIGTHICFSE-KELIEALTLEFNNYNEMIVQEYI--KGTEITVSIIDI-- 190
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
+ P VL P +++R K ++Y KY + P + V +
Sbjct: 191 --EGKPTVL-PI---------LELRPKKLFYDYEAKY-TDGMTEFIIPAQIGEEVTKKVE 237
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A ++ +LG FAR+DG GT F ++N + GM + S
Sbjct: 238 DIALRIYNKLGCKHFARVDGI------------------VSNGTFYFLEVNTLPGMTELS 279
Query: 432 FLFQQASKVGFSHSNILRTI 451
L A G S ++ TI
Sbjct: 280 DLPMSAKAYGLSFEELVNTI 299
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 121/312 (38%), Gaps = 77/312 (24%)
Query: 615 ADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 674
DE+ S + +K + N +F +HG GEDG LQ++L++ GVPYTG G+ S
Sbjct: 35 VDEIDFTLSFMDKLKQLR-NYDVIFNILHGTFGEDGHLQAILDSVGVPYTGSGMETSVIA 93
Query: 675 MDKVATSLALNHLADLGVLT-------INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 727
DK +L ++ + + I ++R ++++ P V
Sbjct: 94 FDKYICNLYVHDIVSVPRFILLPKQEFIQNGIQRVKEVVGMPCV---------------- 137
Query: 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 787
+KP ++G S G +C +E + LE
Sbjct: 138 IKPRKEGSSIG-THICFSEKELIEALTLE------------------------------- 165
Query: 788 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL 847
N + ++ + + EITV +I G +++P + ++
Sbjct: 166 ---------------FNNYNEMIVQEYIKGTEITVSIIDIEGK-PTVLPILELRPKKLFY 209
Query: 848 SLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEV 907
E K+ G + P T+ ++ R I N L + F+R+D V+ NG
Sbjct: 210 DYEAKYTDGMTEFIIPAQIGEEVTKKVEDIALR---IYNKLGCKHFARVDGIVS--NGTF 264
Query: 908 LIIEVNTVPGMT 919
+EVNT+PGMT
Sbjct: 265 YFLEVNTLPGMT 276
>gi|408411610|ref|ZP_11182750.1| D-alanine--D-alanine ligase [Lactobacillus sp. 66c]
gi|409351421|ref|ZP_11234137.1| D-alanine--D-alanine ligase [Lactobacillus equicursoris CIP 110162]
gi|407874217|emb|CCK84556.1| D-alanine--D-alanine ligase [Lactobacillus sp. 66c]
gi|407876764|emb|CCK86195.1| D-alanine--D-alanine ligase [Lactobacillus equicursoris CIP 110162]
Length = 361
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 167/389 (42%), Gaps = 52/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VGLI GG S+E +S+ SA ++ I D V +I NA ++S + D
Sbjct: 6 QVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWI---TNAGYMTSEEDSFKVLED 62
Query: 139 FDFKLE--SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
+ +E S A +++ A+ +D++FP +HG GEDG +Q + + PFVG
Sbjct: 63 PSYMVEKPSKAANLSNIAALADR--PELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + + G ++T+ + ++ N W V+ +L N+
Sbjct: 121 VLAASVTMDKEFSKILAQRVGVPVAKWVTIKRYEYDDAQ-NPKHDYQW-VSQQLGTNN-- 176
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP+ GSS+G+T V+D A + DD+V+VE + G TA++
Sbjct: 177 LFVKPSNQGSSVGIT---HVVDDSNYADALAEAFKYDDKVLVEEGIVGTEVETAVL---- 229
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D P+V ++ + ++ ++Y KY P + P V +
Sbjct: 230 -GND-QPIVSGVGQI---------INAANSWYDYDNKYSNASTTTLQIPAQIPDEVAQKV 278
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R+ A +++ ARID E G ++F ++N + G
Sbjct: 279 RDNALKIYRVTECSGMARIDSML-----------------REDGEVIFNELNTLPGFTNI 321
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S+S+++ +I A R+
Sbjct: 322 SMYPKLFEEAGISYSDLITKLIDLAMERY 350
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 123/318 (38%), Gaps = 61/318 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG LQ L P+ G V+A+ MDK + + LA + + K
Sbjct: 91 LFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAASVTMDKEFSKI----LAQRVGVPVAK 146
Query: 698 DV---RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
V R + D + P D + ++ +L L VKP+ G S G+ + D + Y A
Sbjct: 147 WVTIKRYEYDDAQNPKHD-YQWVSQQLGTNNLFVKPSNQGSSVGITHVV---DDSNYADA 202
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L E ++L+ E V T
Sbjct: 203 LAEAF------------------KYDDKVLVEEGIVGT---------------------- 222
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
E+ V+G + S + + + + + K+ + L P + E
Sbjct: 223 ----EVETAVLGNDQPIVSGVGQI-INAANSWYDYDNKYSNASTTTLQIPAQ--IPDEVA 275
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
K + I + G +RID+ + D GEV+ E+NT+PG T + ++ L E+
Sbjct: 276 QKVRDNALKIYRVTECSGMARIDSMLRED-GEVIFNELNTLPGFT--NISMYPKLFEEAG 332
Query: 935 MYPHQFFRKVLDLGSERF 952
+ K++DL ER+
Sbjct: 333 ISYSDLITKLIDLAMERY 350
>gi|227889052|ref|ZP_04006857.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200]
gi|227850281|gb|EEJ60367.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200]
Length = 375
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 166/390 (42%), Gaps = 52/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSNTP 136
+++GLI GG S+E +S+ SA ++ + I + V +I + A S +V N
Sbjct: 19 IKIGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNP- 77
Query: 137 ADFDFKLE-SLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
K+E + ++S E +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 78 -----KMEVANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVG 132
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGK 251
A DK + + G ++ E N+ +L +V ++L
Sbjct: 133 DDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQL---GSD 189
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
+ VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 190 LFVKPSNQGSSVGVS----HVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL--- 242
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ + KD+ + Y KY P + P ++ +
Sbjct: 243 --GND-KPIVAGVGQI---------INAKDSFYTYENKYDDDSTSTLEIPAKLPEGIVET 290
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A +FQ ARID +E ++ T++N + G
Sbjct: 291 VRKNALKVFQATECSGLARIDSML----------------RSEDNEVVLTEVNALPGFTN 334
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + ++G +++++ +I +A R+
Sbjct: 335 ISMYPKLFEEIGIPYTDLITKLIDYAMERY 364
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 169/461 (36%), Gaps = 123/461 (26%)
Query: 496 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 555
+IFGG++SE +VS+MS N++ + N +V P + + D + D D+ SR
Sbjct: 23 LIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWITN--------DGYLAD-DADSRK 72
Query: 556 VWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIA 615
V P +E P + A S++
Sbjct: 73 VLDNP---------------KMEVANPHKVANISNII----------------------- 94
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
EL R I+ F VHG +GEDG LQ L P+ G V+A+ M
Sbjct: 95 -ELKDRPEID-----------VFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAVTM 142
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPARDG 734
DK T + LA + + K + K P + + +E + L VKP+ G
Sbjct: 143 DKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQG 198
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 794
S GV+ + ++ V AL E F D+
Sbjct: 199 SSVGVSHVTNEKEYKV---ALAEA------------------------------FKYDDK 225
Query: 795 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 854
+L + + GN + + VG I + K+S + E K+
Sbjct: 226 VLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYENKYD 270
Query: 855 GGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
+ L P P I+ T + K + A + G +RID+ + ++ EV++ E
Sbjct: 271 DDSTSTLEIPAKLPEGIVETVRKNALK-----VFQATECSGLARIDSMLRSEDNEVVLTE 325
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
VN +PG T + ++ L E+ + K++D ER+
Sbjct: 326 VNALPGFT--NISMYPKLFEEIGIPYTDLITKLIDYAMERY 364
>gi|449053023|ref|ZP_21732442.1| D-alanyl-alanine synthetase A [Klebsiella pneumoniae hvKP1]
gi|448875808|gb|EMB10815.1| D-alanyl-alanine synthetase A [Klebsiella pneumoniae hvKP1]
Length = 365
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 161/370 (43%), Gaps = 44/370 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y +
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQ-GLWHINDAGNYLLNAQ 62
Query: 135 TPADFDFKLES--LAQGFGSLS------EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + + LAQ G + E + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALRPSTVTLAQIPGREAQQLINAESGQPLAA-IDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK + G P L + N ++ S V
Sbjct: 122 MANLPFVGSDVLGSAAC---MDKDVTKRLLRDAGLAVAPFITL--TRANRAQFSFADVEA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + +A + E D +VVVE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVKNE-EQYHQAVALAFE-FDHKVVVEQGIK-GREIE 230
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + + Y KY+ Q P
Sbjct: 231 CAVL----GND-HPQASTCGEIVLNSE----------FYAYDTKYIDDQGAQVVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + + V + T G T ++ +
Sbjct: 276 PEINDKIRAIAVQAYQTLGCGGMARVDVFLTADNEVVINEINTLPGFTNIS--MYPKLWQ 333
Query: 424 ISGMEQTSFL 433
SG++ TS +
Sbjct: 334 ASGLDYTSLI 343
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L LA +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + ++ +KL L VKPA G S GV+++ E Y +A
Sbjct: 161 LTRANRAQFS---------FADVEAKLGLP-LFVKPANQGSSVGVSKVKNEEQ---YHQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDHPQASTCGEIVL--NSEFYAYDTKYIDDQGAQVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCGGMARVDVFLTADN-EVVINEINTLPGFT 323
>gi|15800107|ref|NP_286119.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
EDL933]
gi|15829685|ref|NP_308458.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. Sakai]
gi|16128366|ref|NP_414915.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
MG1655]
gi|24111677|ref|NP_706187.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 301]
gi|30061806|ref|NP_835977.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 2457T]
gi|157155036|ref|YP_001461557.1| D-alanyl-alanine synthetase A [Escherichia coli E24377A]
gi|157159898|ref|YP_001457216.1| D-alanyl-alanine synthetase A [Escherichia coli HS]
gi|168749828|ref|ZP_02774850.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4113]
gi|168756907|ref|ZP_02781914.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4401]
gi|168761571|ref|ZP_02786578.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4501]
gi|168768316|ref|ZP_02793323.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4486]
gi|168776329|ref|ZP_02801336.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4196]
gi|168783231|ref|ZP_02808238.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4076]
gi|168800248|ref|ZP_02825255.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508]
gi|170021246|ref|YP_001726200.1| D-alanyl-alanine synthetase A [Escherichia coli ATCC 8739]
gi|170079968|ref|YP_001729288.1| D-alanyl-alanine synthetase A [Escherichia coli str. K-12 substr.
DH10B]
gi|170684315|ref|YP_001742513.1| D-alanyl-alanine synthetase A [Escherichia coli SMS-3-5]
gi|191166736|ref|ZP_03028563.1| D-alanine--D-alanine ligase A [Escherichia coli B7A]
gi|193065214|ref|ZP_03046287.1| D-alanine--D-alanine ligase A [Escherichia coli E22]
gi|193068673|ref|ZP_03049634.1| D-alanine--D-alanine ligase A [Escherichia coli E110019]
gi|194428839|ref|ZP_03061374.1| D-alanine--D-alanine ligase A [Escherichia coli B171]
gi|194438869|ref|ZP_03070954.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1]
gi|195938560|ref|ZP_03083942.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
EC4024]
gi|208808983|ref|ZP_03251320.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4206]
gi|208815537|ref|ZP_03256716.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4045]
gi|208822855|ref|ZP_03263173.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4042]
gi|209399711|ref|YP_002269017.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
EC4115]
gi|209917592|ref|YP_002291676.1| D-alanyl-alanine synthetase A [Escherichia coli SE11]
gi|215485463|ref|YP_002327894.1| D-alanyl-alanine synthetase A [Escherichia coli O127:H6 str.
E2348/69]
gi|217326355|ref|ZP_03442439.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
TW14588]
gi|218552941|ref|YP_002385854.1| D-alanyl-alanine synthetase A [Escherichia coli IAI1]
gi|218693840|ref|YP_002401507.1| D-alanyl-alanine synthetase A [Escherichia coli 55989]
gi|218698715|ref|YP_002406344.1| D-alanyl-alanine synthetase A [Escherichia coli IAI39]
gi|238899671|ref|YP_002925467.1| D-alanyl-alanine synthetase A [Escherichia coli BW2952]
gi|253774637|ref|YP_003037468.1| D-alanyl-alanine synthetase A [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160447|ref|YP_003043555.1| D-alanyl-alanine synthetase A [Escherichia coli B str. REL606]
gi|254287250|ref|YP_003052998.1| D-alanyl-alanine synthetase A [Escherichia coli BL21(DE3)]
gi|254791557|ref|YP_003076394.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
TW14359]
gi|260842581|ref|YP_003220359.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009]
gi|260853603|ref|YP_003227494.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str. 11368]
gi|260866542|ref|YP_003232944.1| D-alanine--D-alanine ligase [Escherichia coli O111:H- str. 11128]
gi|293408524|ref|ZP_06652363.1| D-alanine-D-alanine ligase A [Escherichia coli B354]
gi|293413632|ref|ZP_06656281.1| D-alanine-D-alanine ligase [Escherichia coli B185]
gi|293418448|ref|ZP_06660883.1| D-alanine-D-alanine ligase [Escherichia coli B088]
gi|297517452|ref|ZP_06935838.1| D-alanyl-alanine synthetase A [Escherichia coli OP50]
gi|300818299|ref|ZP_07098510.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
gi|300820384|ref|ZP_07100536.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
gi|300903359|ref|ZP_07121287.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
gi|300930329|ref|ZP_07145741.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
gi|300936362|ref|ZP_07151290.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
gi|300947975|ref|ZP_07162120.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
gi|300957935|ref|ZP_07170104.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
gi|301025474|ref|ZP_07189021.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
gi|301025803|ref|ZP_07189310.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
gi|301301524|ref|ZP_07207659.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
gi|301647295|ref|ZP_07247111.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
gi|309794898|ref|ZP_07689319.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
gi|312964607|ref|ZP_07778858.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75]
gi|312970473|ref|ZP_07784654.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70]
gi|331640894|ref|ZP_08342029.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli H736]
gi|331676046|ref|ZP_08376758.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli H591]
gi|331681772|ref|ZP_08382405.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli H299]
gi|383176957|ref|YP_005454962.1| D-alanyl-alanine synthetase A [Shigella sonnei 53G]
gi|384541810|ref|YP_005725871.1| D-alanine--D-alanine ligase [Shigella flexneri 2002017]
gi|386279408|ref|ZP_10057089.1| D-alanine-D-alanine ligase A [Escherichia sp. 4_1_40B]
gi|386596742|ref|YP_006093142.1| D-alanine--D-alanine ligase [Escherichia coli DH1]
gi|386612573|ref|YP_006132239.1| D-alanine-D-alanine ligase A DdlA [Escherichia coli UMNK88]
gi|386622742|ref|YP_006142470.1| D-alanine--D-alanine ligase [Escherichia coli O7:K1 str. CE10]
gi|386703603|ref|YP_006167450.1| D-alanine--D-alanine ligase [Escherichia coli P12b]
gi|387605887|ref|YP_006094743.1| D-alanine--D-alanine ligase [Escherichia coli 042]
gi|387610907|ref|YP_006114023.1| D-alanine--D-alanine ligase [Escherichia coli ETEC H10407]
gi|387620141|ref|YP_006127768.1| D-alanyl-alanine synthetase A [Escherichia coli DH1]
gi|387823287|ref|YP_006094164.1| D-alanine-D-alanine ligase A [Escherichia coli BL21(DE3)]
gi|387880973|ref|YP_006311275.1| D-alanyl-alanine synthetase A [Escherichia coli Xuzhou21]
gi|388476488|ref|YP_488674.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
W3110]
gi|404373705|ref|ZP_10978940.1| D-alanine-D-alanine ligase A [Escherichia sp. 1_1_43]
gi|407467828|ref|YP_006785730.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407483441|ref|YP_006780590.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483995|ref|YP_006771541.1| D-alanyl-alanine synthetase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414574573|ref|ZP_11431782.1| D-alanine--D-alanine ligase A [Shigella sonnei 3233-85]
gi|415777234|ref|ZP_11488486.1| D-alanine--D-alanine ligase [Escherichia coli 3431]
gi|415793753|ref|ZP_11496297.1| D-alanine--D-alanine ligase [Escherichia coli EPECa14]
gi|415801204|ref|ZP_11499605.1| D-alanine--D-alanine ligase [Escherichia coli E128010]
gi|415821103|ref|ZP_11510117.1| D-alanine--D-alanine ligase [Escherichia coli OK1180]
gi|415828380|ref|ZP_11514977.1| D-alanine--D-alanine ligase [Escherichia coli OK1357]
gi|415852279|ref|ZP_11528655.1| D-alanine--D-alanine ligase [Shigella sonnei 53G]
gi|415859612|ref|ZP_11533811.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T]
gi|415862650|ref|ZP_11536090.1| D-ala D-ala ligase [Escherichia coli MS 85-1]
gi|415873770|ref|ZP_11540943.1| D-alanine--D-alanine ligase A [Escherichia coli MS 79-10]
gi|416281069|ref|ZP_11645639.1| D-alanine--D-alanine ligase [Shigella boydii ATCC 9905]
gi|416312926|ref|ZP_11657861.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1044]
gi|416316743|ref|ZP_11659875.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC1212]
gi|416325689|ref|ZP_11666097.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1125]
gi|416780442|ref|ZP_11876828.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. G5101]
gi|416791594|ref|ZP_11881727.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str.
493-89]
gi|416803236|ref|ZP_11886587.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. H
2687]
gi|416811807|ref|ZP_11890080.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str.
3256-97]
gi|416821302|ref|ZP_11893998.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. USDA
5905]
gi|416834943|ref|ZP_11901191.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
LSU-61]
gi|417131739|ref|ZP_11976524.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
5.0588]
gi|417139290|ref|ZP_11982712.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
97.0259]
gi|417144658|ref|ZP_11986464.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
1.2264]
gi|417152483|ref|ZP_11991274.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
96.0497]
gi|417175196|ref|ZP_12004992.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3.2608]
gi|417179155|ref|ZP_12007255.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
93.0624]
gi|417190938|ref|ZP_12013534.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
4.0522]
gi|417218176|ref|ZP_12023778.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
JB1-95]
gi|417224702|ref|ZP_12027993.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
96.154]
gi|417229931|ref|ZP_12031517.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
5.0959]
gi|417246611|ref|ZP_12039712.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
9.0111]
gi|417252984|ref|ZP_12044743.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
4.0967]
gi|417260762|ref|ZP_12048260.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
2.3916]
gi|417270648|ref|ZP_12058001.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
2.4168]
gi|417279497|ref|ZP_12066803.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3.2303]
gi|417293180|ref|ZP_12080460.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli B41]
gi|417299298|ref|ZP_12086528.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
900105 (10e)]
gi|417306877|ref|ZP_12093757.1| D-alanine--D-alanine ligase [Escherichia coli PCN033]
gi|417579600|ref|ZP_12230422.1| D-alanine--D-alanine ligase [Escherichia coli STEC_B2F1]
gi|417590056|ref|ZP_12240776.1| D-alanine--D-alanine ligase [Escherichia coli 2534-86]
gi|417595296|ref|ZP_12245966.1| D-alanine--D-alanine ligase [Escherichia coli 3030-1]
gi|417600655|ref|ZP_12251240.1| D-alanine--D-alanine ligase [Escherichia coli STEC_94C]
gi|417606366|ref|ZP_12256895.1| D-alanine--D-alanine ligase [Escherichia coli STEC_DG131-3]
gi|417611411|ref|ZP_12261885.1| D-alanine--D-alanine ligase [Escherichia coli STEC_EH250]
gi|417621642|ref|ZP_12271971.1| D-alanine--D-alanine ligase [Escherichia coli STEC_H.1.8]
gi|417632863|ref|ZP_12283084.1| D-alanine--D-alanine ligase [Escherichia coli STEC_S1191]
gi|417637675|ref|ZP_12287851.1| D-alanine--D-alanine ligase [Escherichia coli TX1999]
gi|417665460|ref|ZP_12315027.1| D-alanine--D-alanine ligase [Escherichia coli STEC_O31]
gi|417702256|ref|ZP_12351376.1| D-alanine--D-alanine ligase [Shigella flexneri K-218]
gi|417710913|ref|ZP_12359920.1| D-alanine--D-alanine ligase [Shigella flexneri K-272]
gi|417715579|ref|ZP_12364515.1| D-alanine--D-alanine ligase [Shigella flexneri K-227]
gi|417721369|ref|ZP_12370217.1| D-alanine--D-alanine ligase [Shigella flexneri K-304]
gi|417726594|ref|ZP_12375343.1| D-alanine--D-alanine ligase [Shigella flexneri K-671]
gi|417733502|ref|ZP_12382160.1| D-alanine--D-alanine ligase [Shigella flexneri 2747-71]
gi|417737093|ref|ZP_12385703.1| D-alanine--D-alanine ligase [Shigella flexneri 4343-70]
gi|417741722|ref|ZP_12390277.1| D-alanine-D-alanine ligase A [Shigella flexneri 2930-71]
gi|417754171|ref|ZP_12402266.1| D-alanine-D-alanine ligase A [Escherichia coli DEC2B]
gi|417803725|ref|ZP_12450761.1| D-alanyl-alanine synthetase A [Escherichia coli O104:H4 str.
LB226692]
gi|417826370|ref|ZP_12472949.1| D-alanine-D-alanine ligase A [Shigella flexneri J1713]
gi|417831477|ref|ZP_12477999.1| D-alanyl-alanine synthetase A [Escherichia coli O104:H4 str.
01-09591]
gi|417867677|ref|ZP_12512712.1| hypothetical protein C22711_4603 [Escherichia coli O104:H4 str.
C227-11]
gi|417945803|ref|ZP_12589032.1| D-alanyl-alanine synthetase A [Escherichia coli XH140A]
gi|417976649|ref|ZP_12617441.1| D-alanyl-alanine synthetase A [Escherichia coli XH001]
gi|418262083|ref|ZP_12883772.1| D-alanine-D-alanine ligase A [Shigella sonnei str. Moseley]
gi|418301229|ref|ZP_12913023.1| D-alanine--D-alanine ligase [Escherichia coli UMNF18]
gi|418942220|ref|ZP_13495509.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H43 str. T22]
gi|418959328|ref|ZP_13511227.1| D-ala D-ala ligase [Escherichia coli J53]
gi|418995391|ref|ZP_13543006.1| D-alanine-D-alanine ligase A [Escherichia coli DEC1A]
gi|419000532|ref|ZP_13548094.1| D-alanine-D-alanine ligase A [Escherichia coli DEC1B]
gi|419006066|ref|ZP_13553522.1| D-alanine-D-alanine ligase A [Escherichia coli DEC1C]
gi|419011892|ref|ZP_13559260.1| D-alanine--D-alanine ligase A [Escherichia coli DEC1D]
gi|419016836|ref|ZP_13564162.1| D-alanine-D-alanine ligase A [Escherichia coli DEC1E]
gi|419022517|ref|ZP_13569760.1| D-alanine--D-alanine ligase A [Escherichia coli DEC2A]
gi|419027339|ref|ZP_13574539.1| D-alanine-D-alanine ligase A [Escherichia coli DEC2C]
gi|419033537|ref|ZP_13580635.1| D-alanine-D-alanine ligase A [Escherichia coli DEC2D]
gi|419038119|ref|ZP_13585179.1| D-alanine-D-alanine ligase A [Escherichia coli DEC2E]
gi|419043315|ref|ZP_13590289.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3A]
gi|419048967|ref|ZP_13595886.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3B]
gi|419055020|ref|ZP_13601878.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3C]
gi|419060615|ref|ZP_13607400.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3D]
gi|419066493|ref|ZP_13613174.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3E]
gi|419073622|ref|ZP_13619195.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3F]
gi|419078681|ref|ZP_13624166.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4A]
gi|419084333|ref|ZP_13629749.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4B]
gi|419102003|ref|ZP_13647170.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4E]
gi|419107456|ref|ZP_13652566.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4F]
gi|419113224|ref|ZP_13658259.1| D-alanine-D-alanine ligase A [Escherichia coli DEC5A]
gi|419118809|ref|ZP_13663794.1| D-alanine-D-alanine ligase A [Escherichia coli DEC5B]
gi|419134786|ref|ZP_13679595.1| D-alanine--D-alanine ligase A [Escherichia coli DEC5E]
gi|419140907|ref|ZP_13685664.1| D-alanine--D-alanine ligase A [Escherichia coli DEC6A]
gi|419146473|ref|ZP_13691169.1| D-alanine-D-alanine ligase A [Escherichia coli DEC6B]
gi|419152211|ref|ZP_13696799.1| D-alanine--D-alanine ligase A [Escherichia coli DEC6C]
gi|419157712|ref|ZP_13702238.1| D-alanine--D-alanine ligase A [Escherichia coli DEC6D]
gi|419162649|ref|ZP_13707129.1| D-alanine-D-alanine ligase A [Escherichia coli DEC6E]
gi|419168373|ref|ZP_13712771.1| D-alanine--D-alanine ligase A [Escherichia coli DEC7A]
gi|419173766|ref|ZP_13717622.1| D-alanine-D-alanine ligase A [Escherichia coli DEC7B]
gi|419179368|ref|ZP_13722993.1| D-alanine-D-alanine ligase A [Escherichia coli DEC7C]
gi|419184924|ref|ZP_13728446.1| D-alanine-D-alanine ligase A [Escherichia coli DEC7D]
gi|419190171|ref|ZP_13733639.1| D-alanine--D-alanine ligase A [Escherichia coli DEC7E]
gi|419195470|ref|ZP_13738878.1| D-alanine--D-alanine ligase A [Escherichia coli DEC8A]
gi|419201531|ref|ZP_13744759.1| D-alanine-D-alanine ligase A [Escherichia coli DEC8B]
gi|419207375|ref|ZP_13750503.1| D-alanine-D-alanine ligase A [Escherichia coli DEC8C]
gi|419213814|ref|ZP_13756846.1| D-alanine-D-alanine ligase A [Escherichia coli DEC8D]
gi|419219639|ref|ZP_13762596.1| D-alanine-D-alanine ligase A [Escherichia coli DEC8E]
gi|419225098|ref|ZP_13767988.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9A]
gi|419230973|ref|ZP_13773765.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9B]
gi|419236223|ref|ZP_13778974.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9C]
gi|419241814|ref|ZP_13784464.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9D]
gi|419247218|ref|ZP_13789834.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9E]
gi|419259007|ref|ZP_13801467.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10B]
gi|419265078|ref|ZP_13807465.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10C]
gi|419270693|ref|ZP_13813026.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10D]
gi|419276495|ref|ZP_13818765.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10E]
gi|419282095|ref|ZP_13824317.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10F]
gi|419287840|ref|ZP_13829958.1| D-alanine-D-alanine ligase A [Escherichia coli DEC11A]
gi|419293176|ref|ZP_13835237.1| D-alanine-D-alanine ligase A [Escherichia coli DEC11B]
gi|419298618|ref|ZP_13840636.1| D-alanine--D-alanine ligase A [Escherichia coli DEC11C]
gi|419304902|ref|ZP_13846816.1| D-alanine--D-alanine ligase A [Escherichia coli DEC11D]
gi|419309926|ref|ZP_13851803.1| D-alanine--D-alanine ligase A [Escherichia coli DEC11E]
gi|419315246|ref|ZP_13857074.1| D-alanine--D-alanine ligase A [Escherichia coli DEC12A]
gi|419321021|ref|ZP_13862764.1| D-alanine-D-alanine ligase A [Escherichia coli DEC12B]
gi|419327263|ref|ZP_13868896.1| D-alanine--D-alanine ligase A [Escherichia coli DEC12C]
gi|419332679|ref|ZP_13874243.1| D-alanine-D-alanine ligase A [Escherichia coli DEC12D]
gi|419339615|ref|ZP_13881092.1| D-alanine-D-alanine ligase A [Escherichia coli DEC12E]
gi|419344024|ref|ZP_13885408.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13A]
gi|419348456|ref|ZP_13889809.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13B]
gi|419353357|ref|ZP_13894643.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13C]
gi|419358703|ref|ZP_13899934.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13D]
gi|419363631|ref|ZP_13904813.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13E]
gi|419368657|ref|ZP_13909787.1| D-alanine--D-alanine ligase A [Escherichia coli DEC14A]
gi|419373843|ref|ZP_13914899.1| D-alanine-D-alanine ligase A [Escherichia coli DEC14B]
gi|419379259|ref|ZP_13920240.1| D-alanine-D-alanine ligase A [Escherichia coli DEC14C]
gi|419384518|ref|ZP_13925422.1| D-alanine-D-alanine ligase A [Escherichia coli DEC14D]
gi|419389792|ref|ZP_13930631.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15A]
gi|419394964|ref|ZP_13935749.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15B]
gi|419400315|ref|ZP_13941049.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15C]
gi|419405485|ref|ZP_13946189.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15D]
gi|419410977|ref|ZP_13951651.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15E]
gi|419807344|ref|ZP_14332406.1| D-ala D-ala ligase [Escherichia coli AI27]
gi|419811879|ref|ZP_14336751.1| D-alanyl-alanine synthetase A [Escherichia coli O32:H37 str. P4]
gi|419867961|ref|ZP_14390275.1| D-alanyl-alanine synthetase A [Escherichia coli O103:H2 str.
CVM9450]
gi|419876908|ref|ZP_14398567.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CVM9534]
gi|419885774|ref|ZP_14406440.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CVM9545]
gi|419890294|ref|ZP_14410579.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CVM9570]
gi|419893098|ref|ZP_14413104.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CVM9574]
gi|419900654|ref|ZP_14420080.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM9942]
gi|419908347|ref|ZP_14427081.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CVM10026]
gi|419916910|ref|ZP_14435193.1| D-alanyl-alanine synthetase A [Escherichia coli KD2]
gi|419923249|ref|ZP_14441211.1| D-alanyl-alanine synthetase A [Escherichia coli 541-15]
gi|419927993|ref|ZP_14445713.1| D-alanyl-alanine synthetase A [Escherichia coli 541-1]
gi|419941452|ref|ZP_14458139.1| D-alanyl-alanine synthetase A [Escherichia coli 75]
gi|419948985|ref|ZP_14465248.1| D-alanyl-alanine synthetase A [Escherichia coli CUMT8]
gi|420088195|ref|ZP_14600099.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CVM9602]
gi|420092995|ref|ZP_14604685.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CVM9634]
gi|420103124|ref|ZP_14614038.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CVM9455]
gi|420109753|ref|ZP_14619853.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CVM9553]
gi|420113435|ref|ZP_14623178.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM10021]
gi|420119579|ref|ZP_14628844.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM10030]
gi|420125654|ref|ZP_14634445.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM10224]
gi|420130767|ref|ZP_14639247.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM9952]
gi|420267688|ref|ZP_14770095.1| D-alanine--D-alanine ligase A [Escherichia coli PA22]
gi|420278824|ref|ZP_14781091.1| D-alanine--D-alanine ligase A [Escherichia coli TW06591]
gi|420284990|ref|ZP_14787208.1| D-alanine--D-alanine ligase A [Escherichia coli TW10246]
gi|420290506|ref|ZP_14792671.1| D-alanine--D-alanine ligase A [Escherichia coli TW11039]
gi|420296164|ref|ZP_14798261.1| D-alanine--D-alanine ligase A [Escherichia coli TW09109]
gi|420302319|ref|ZP_14804351.1| D-alanine--D-alanine ligase A [Escherichia coli TW10119]
gi|420307634|ref|ZP_14809608.1| D-alanine--D-alanine ligase A [Escherichia coli EC1738]
gi|420313360|ref|ZP_14815268.1| D-alanine--D-alanine ligase A [Escherichia coli EC1734]
gi|420318811|ref|ZP_14820668.1| D-alanine--D-alanine ligase A [Shigella flexneri 2850-71]
gi|420339764|ref|ZP_14841298.1| D-alanine--D-alanine ligase A [Shigella flexneri K-404]
gi|420384014|ref|ZP_14883402.1| D-alanine--D-alanine ligase A [Escherichia coli EPECa12]
gi|420389714|ref|ZP_14888987.1| D-alanine-D-alanine ligase A [Escherichia coli EPEC C342-62]
gi|421776054|ref|ZP_16212660.1| D-ala D-ala ligase [Escherichia coli AD30]
gi|421810592|ref|ZP_16246403.1| D-alanine--D-alanine ligase A [Escherichia coli 8.0416]
gi|421816684|ref|ZP_16252247.1| D-alanine--D-alanine ligase A [Escherichia coli 10.0821]
gi|421828800|ref|ZP_16264130.1| D-alanine--D-alanine ligase A [Escherichia coli PA7]
gi|422330633|ref|ZP_16411650.1| D-alanine-D-alanine ligase A [Escherichia coli 4_1_47FAA]
gi|422355396|ref|ZP_16436112.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
gi|422763171|ref|ZP_16816926.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
gi|422764910|ref|ZP_16818637.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
gi|422769609|ref|ZP_16823300.1| D-alanine-D-alanine ligase [Escherichia coli E482]
gi|422777073|ref|ZP_16830726.1| D-alanine-D-alanine ligase [Escherichia coli H120]
gi|422784986|ref|ZP_16837725.1| D-alanine-D-alanine ligase [Escherichia coli H489]
gi|422791183|ref|ZP_16843886.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
gi|422816397|ref|ZP_16864612.1| D-alanine-D-alanine ligase A [Escherichia coli M919]
gi|422832112|ref|ZP_16880235.1| D-alanine-D-alanine ligase A [Escherichia coli B093]
gi|422991094|ref|ZP_16981865.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
C227-11]
gi|422993033|ref|ZP_16983797.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
C236-11]
gi|422998244|ref|ZP_16989000.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
09-7901]
gi|423006705|ref|ZP_16997448.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
04-8351]
gi|423008348|ref|ZP_16999086.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-3677]
gi|423022535|ref|ZP_17013238.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-4404]
gi|423027689|ref|ZP_17018382.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-4522]
gi|423033526|ref|ZP_17024210.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-4623]
gi|423036392|ref|ZP_17027066.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C1]
gi|423041512|ref|ZP_17032179.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C2]
gi|423048198|ref|ZP_17038855.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C3]
gi|423051782|ref|ZP_17040590.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C4]
gi|423058747|ref|ZP_17047543.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C5]
gi|423652863|ref|ZP_17628167.1| D-alanine--D-alanine ligase A [Escherichia coli PA31]
gi|423701164|ref|ZP_17675623.1| D-alanine-D-alanine ligase A [Escherichia coli H730]
gi|424075230|ref|ZP_17812595.1| D-alanine--D-alanine ligase A [Escherichia coli FDA505]
gi|424081558|ref|ZP_17818435.1| D-alanine--D-alanine ligase A [Escherichia coli FDA517]
gi|424094399|ref|ZP_17830175.1| D-alanine--D-alanine ligase A [Escherichia coli FRIK1985]
gi|424107610|ref|ZP_17842205.1| D-alanine--D-alanine ligase A [Escherichia coli 93-001]
gi|424113601|ref|ZP_17847770.1| D-alanine--D-alanine ligase A [Escherichia coli PA3]
gi|424119664|ref|ZP_17853395.1| D-alanine--D-alanine ligase A [Escherichia coli PA5]
gi|424125924|ref|ZP_17859143.1| D-alanine--D-alanine ligase A [Escherichia coli PA9]
gi|424132008|ref|ZP_17864828.1| D-alanine--D-alanine ligase A [Escherichia coli PA10]
gi|424138552|ref|ZP_17870865.1| D-alanine--D-alanine ligase A [Escherichia coli PA14]
gi|424144993|ref|ZP_17876780.1| D-alanine--D-alanine ligase A [Escherichia coli PA15]
gi|424151138|ref|ZP_17882411.1| D-alanine--D-alanine ligase A [Escherichia coli PA24]
gi|424184878|ref|ZP_17887844.1| D-alanine--D-alanine ligase A [Escherichia coli PA25]
gi|424266072|ref|ZP_17893746.1| D-alanine--D-alanine ligase A [Escherichia coli PA28]
gi|424421493|ref|ZP_17899473.1| D-alanine--D-alanine ligase A [Escherichia coli PA32]
gi|424453546|ref|ZP_17905102.1| D-alanine--D-alanine ligase A [Escherichia coli PA33]
gi|424459838|ref|ZP_17910801.1| D-alanine--D-alanine ligase A [Escherichia coli PA39]
gi|424472875|ref|ZP_17922568.1| D-alanine--D-alanine ligase A [Escherichia coli PA42]
gi|424478824|ref|ZP_17928087.1| D-alanine--D-alanine ligase A [Escherichia coli TW07945]
gi|424484892|ref|ZP_17933777.1| D-alanine--D-alanine ligase A [Escherichia coli TW09098]
gi|424498103|ref|ZP_17945394.1| D-alanine--D-alanine ligase A [Escherichia coli EC4203]
gi|424504330|ref|ZP_17951127.1| D-alanine--D-alanine ligase A [Escherichia coli EC4196]
gi|424510584|ref|ZP_17956843.1| D-alanine--D-alanine ligase A [Escherichia coli TW14313]
gi|424518159|ref|ZP_17962606.1| D-alanine--D-alanine ligase A [Escherichia coli TW14301]
gi|424523987|ref|ZP_17968029.1| D-alanine--D-alanine ligase A [Escherichia coli EC4421]
gi|424530196|ref|ZP_17973843.1| D-alanine--D-alanine ligase A [Escherichia coli EC4422]
gi|424536170|ref|ZP_17979449.1| D-alanine--D-alanine ligase A [Escherichia coli EC4013]
gi|424542076|ref|ZP_17984914.1| D-alanine--D-alanine ligase A [Escherichia coli EC4402]
gi|424548402|ref|ZP_17990627.1| D-alanine--D-alanine ligase A [Escherichia coli EC4439]
gi|424554665|ref|ZP_17996404.1| D-alanine--D-alanine ligase A [Escherichia coli EC4436]
gi|424561012|ref|ZP_18002314.1| D-alanine--D-alanine ligase A [Escherichia coli EC4437]
gi|424567041|ref|ZP_18007974.1| D-alanine--D-alanine ligase A [Escherichia coli EC4448]
gi|424573229|ref|ZP_18013669.1| D-alanine--D-alanine ligase A [Escherichia coli EC1845]
gi|424579187|ref|ZP_18019136.1| D-alanine--D-alanine ligase A [Escherichia coli EC1863]
gi|424747991|ref|ZP_18176143.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424766747|ref|ZP_18194092.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424768093|ref|ZP_18195385.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425095858|ref|ZP_18498899.1| D-alanine--D-alanine ligase A [Escherichia coli 3.4870]
gi|425101994|ref|ZP_18504659.1| D-alanine--D-alanine ligase A [Escherichia coli 5.2239]
gi|425107797|ref|ZP_18510065.1| D-alanine--D-alanine ligase A [Escherichia coli 6.0172]
gi|425113707|ref|ZP_18515545.1| D-alanine--D-alanine ligase A [Escherichia coli 8.0566]
gi|425118471|ref|ZP_18520206.1| D-alanine--D-alanine ligase A [Escherichia coli 8.0569]
gi|425123617|ref|ZP_18525211.1| D-alanine--D-alanine ligase A [Escherichia coli 8.0586]
gi|425129659|ref|ZP_18530775.1| D-alanine--D-alanine ligase A [Escherichia coli 8.2524]
gi|425135998|ref|ZP_18536737.1| D-alanine--D-alanine ligase A [Escherichia coli 10.0833]
gi|425141898|ref|ZP_18542205.1| D-alanine--D-alanine ligase A [Escherichia coli 10.0869]
gi|425148217|ref|ZP_18548128.1| D-alanine--D-alanine ligase A [Escherichia coli 88.0221]
gi|425153832|ref|ZP_18553396.1| D-alanine--D-alanine ligase A [Escherichia coli PA34]
gi|425160283|ref|ZP_18559472.1| D-alanine--D-alanine ligase A [Escherichia coli FDA506]
gi|425165791|ref|ZP_18564615.1| D-alanine--D-alanine ligase A [Escherichia coli FDA507]
gi|425172086|ref|ZP_18570500.1| D-alanine--D-alanine ligase A [Escherichia coli FDA504]
gi|425184115|ref|ZP_18581754.1| D-alanine--D-alanine ligase A [Escherichia coli FRIK1997]
gi|425197195|ref|ZP_18593860.1| D-alanine--D-alanine ligase A [Escherichia coli NE037]
gi|425209610|ref|ZP_18605361.1| D-alanine--D-alanine ligase A [Escherichia coli PA4]
gi|425222220|ref|ZP_18617094.1| D-alanine--D-alanine ligase A [Escherichia coli PA49]
gi|425228465|ref|ZP_18622876.1| D-alanine--D-alanine ligase A [Escherichia coli PA45]
gi|425234765|ref|ZP_18628739.1| D-alanine--D-alanine ligase A [Escherichia coli TT12B]
gi|425246896|ref|ZP_18640120.1| D-alanine--D-alanine ligase A [Escherichia coli 5905]
gi|425258936|ref|ZP_18651315.1| D-alanine--D-alanine ligase A [Escherichia coli EC96038]
gi|425265033|ref|ZP_18656972.1| D-alanine--D-alanine ligase A [Escherichia coli 5412]
gi|425271072|ref|ZP_18662586.1| D-alanine--D-alanine ligase A [Escherichia coli TW15901]
gi|425281746|ref|ZP_18672867.1| D-alanine--D-alanine ligase A [Escherichia coli TW00353]
gi|425292493|ref|ZP_18683093.1| D-alanine--D-alanine ligase A [Escherichia coli PA38]
gi|425303878|ref|ZP_18693667.1| D-alanine--D-alanine ligase A [Escherichia coli N1]
gi|425309238|ref|ZP_18698719.1| D-alanine--D-alanine ligase A [Escherichia coli EC1735]
gi|425315151|ref|ZP_18704242.1| D-alanine--D-alanine ligase A [Escherichia coli EC1736]
gi|425321203|ref|ZP_18709891.1| D-alanine--D-alanine ligase A [Escherichia coli EC1737]
gi|425327394|ref|ZP_18715631.1| D-alanine--D-alanine ligase A [Escherichia coli EC1846]
gi|425333579|ref|ZP_18721313.1| D-alanine--D-alanine ligase A [Escherichia coli EC1847]
gi|425340004|ref|ZP_18727259.1| D-alanine--D-alanine ligase A [Escherichia coli EC1848]
gi|425345880|ref|ZP_18732697.1| D-alanine--D-alanine ligase A [Escherichia coli EC1849]
gi|425352091|ref|ZP_18738486.1| D-alanine--D-alanine ligase A [Escherichia coli EC1850]
gi|425358083|ref|ZP_18744069.1| D-alanine--D-alanine ligase A [Escherichia coli EC1856]
gi|425364190|ref|ZP_18749755.1| D-alanine--D-alanine ligase A [Escherichia coli EC1862]
gi|425370638|ref|ZP_18755614.1| D-alanine--D-alanine ligase A [Escherichia coli EC1864]
gi|425377193|ref|ZP_18761595.1| D-alanine--D-alanine ligase A [Escherichia coli EC1865]
gi|425383432|ref|ZP_18767323.1| D-alanine--D-alanine ligase A [Escherichia coli EC1866]
gi|425390130|ref|ZP_18773600.1| D-alanine--D-alanine ligase A [Escherichia coli EC1868]
gi|425396250|ref|ZP_18779308.1| D-alanine--D-alanine ligase A [Escherichia coli EC1869]
gi|425402234|ref|ZP_18784850.1| D-alanine--D-alanine ligase A [Escherichia coli EC1870]
gi|425408775|ref|ZP_18790942.1| D-alanine--D-alanine ligase A [Escherichia coli NE098]
gi|425415047|ref|ZP_18796697.1| D-alanine--D-alanine ligase A [Escherichia coli FRIK523]
gi|425426201|ref|ZP_18807262.1| D-alanine--D-alanine ligase A [Escherichia coli 0.1304]
gi|427803446|ref|ZP_18970513.1| D-alanine-D-alanine ligase A [Escherichia coli chi7122]
gi|427808064|ref|ZP_18975129.1| D-alanine-D-alanine ligase A [Escherichia coli]
gi|428951005|ref|ZP_19023151.1| D-alanine--D-alanine ligase A [Escherichia coli 88.1042]
gi|428956860|ref|ZP_19028570.1| D-alanine--D-alanine ligase A [Escherichia coli 89.0511]
gi|428963193|ref|ZP_19034389.1| D-alanine--D-alanine ligase A [Escherichia coli 90.0091]
gi|428975809|ref|ZP_19045991.1| D-alanine--D-alanine ligase A [Escherichia coli 90.2281]
gi|428981617|ref|ZP_19051363.1| D-alanine--D-alanine ligase A [Escherichia coli 93.0055]
gi|428987810|ref|ZP_19057110.1| D-alanine--D-alanine ligase A [Escherichia coli 93.0056]
gi|428993622|ref|ZP_19062537.1| D-alanine--D-alanine ligase A [Escherichia coli 94.0618]
gi|429005959|ref|ZP_19073885.1| D-alanine--D-alanine ligase A [Escherichia coli 95.1288]
gi|429012310|ref|ZP_19079571.1| D-alanine--D-alanine ligase A [Escherichia coli 95.0943]
gi|429018596|ref|ZP_19085389.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0428]
gi|429024197|ref|ZP_19090618.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0427]
gi|429036695|ref|ZP_19102145.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0932]
gi|429042745|ref|ZP_19107759.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0107]
gi|429048427|ref|ZP_19113087.1| D-alanine--D-alanine ligase A [Escherichia coli 97.0003]
gi|429053786|ref|ZP_19118286.1| D-alanine--D-alanine ligase A [Escherichia coli 97.1742]
gi|429059475|ref|ZP_19123631.1| D-alanine--D-alanine ligase A [Escherichia coli 97.0007]
gi|429071495|ref|ZP_19134852.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0678]
gi|429076759|ref|ZP_19139979.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0713]
gi|429722574|ref|ZP_19257472.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429774671|ref|ZP_19306674.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02030]
gi|429779934|ref|ZP_19311887.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429783986|ref|ZP_19315899.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02092]
gi|429789324|ref|ZP_19321199.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02093]
gi|429795554|ref|ZP_19327380.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02281]
gi|429801480|ref|ZP_19333258.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02318]
gi|429805112|ref|ZP_19336859.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02913]
gi|429809923|ref|ZP_19341625.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-03439]
gi|429815683|ref|ZP_19347342.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-04080]
gi|429821271|ref|ZP_19352884.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-03943]
gi|429823974|ref|ZP_19355492.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0109]
gi|429830341|ref|ZP_19361211.1| D-alanine--D-alanine ligase A [Escherichia coli 97.0010]
gi|429906945|ref|ZP_19372914.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911143|ref|ZP_19377099.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429916979|ref|ZP_19382919.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922017|ref|ZP_19387938.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927835|ref|ZP_19393741.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429931767|ref|ZP_19397662.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933369|ref|ZP_19399259.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939023|ref|ZP_19404897.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429946666|ref|ZP_19412521.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949298|ref|ZP_19415146.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429957582|ref|ZP_19423411.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432368362|ref|ZP_19611467.1| D-alanine-D-alanine ligase A [Escherichia coli KTE10]
gi|432390301|ref|ZP_19633166.1| D-alanine-D-alanine ligase A [Escherichia coli KTE21]
gi|432415335|ref|ZP_19657966.1| D-alanine-D-alanine ligase A [Escherichia coli KTE44]
gi|432453295|ref|ZP_19695535.1| D-alanine-D-alanine ligase A [Escherichia coli KTE193]
gi|432479743|ref|ZP_19721708.1| D-alanine-D-alanine ligase A [Escherichia coli KTE210]
gi|432484110|ref|ZP_19726034.1| D-alanine-D-alanine ligase A [Escherichia coli KTE212]
gi|432541753|ref|ZP_19778614.1| D-alanine-D-alanine ligase A [Escherichia coli KTE236]
gi|432547093|ref|ZP_19783891.1| D-alanine-D-alanine ligase A [Escherichia coli KTE237]
gi|432562293|ref|ZP_19798920.1| D-alanine-D-alanine ligase A [Escherichia coli KTE51]
gi|432579060|ref|ZP_19815494.1| D-alanine-D-alanine ligase A [Escherichia coli KTE56]
gi|432615157|ref|ZP_19851292.1| D-alanine-D-alanine ligase A [Escherichia coli KTE75]
gi|432620480|ref|ZP_19856526.1| D-alanine-D-alanine ligase A [Escherichia coli KTE76]
gi|432625967|ref|ZP_19861952.1| D-alanine-D-alanine ligase A [Escherichia coli KTE77]
gi|432659624|ref|ZP_19895285.1| D-alanine-D-alanine ligase A [Escherichia coli KTE111]
gi|432669315|ref|ZP_19904864.1| D-alanine-D-alanine ligase A [Escherichia coli KTE119]
gi|432677970|ref|ZP_19913397.1| D-alanine-D-alanine ligase A [Escherichia coli KTE142]
gi|432678794|ref|ZP_19914197.1| D-alanine-D-alanine ligase A [Escherichia coli KTE143]
gi|432690273|ref|ZP_19925519.1| D-alanine-D-alanine ligase A [Escherichia coli KTE161]
gi|432702954|ref|ZP_19938080.1| D-alanine-D-alanine ligase A [Escherichia coli KTE171]
gi|432717388|ref|ZP_19952390.1| D-alanine-D-alanine ligase A [Escherichia coli KTE9]
gi|432748836|ref|ZP_19983459.1| D-alanine-D-alanine ligase A [Escherichia coli KTE29]
gi|432763670|ref|ZP_19998122.1| D-alanine-D-alanine ligase A [Escherichia coli KTE48]
gi|432769182|ref|ZP_20003555.1| D-alanine-D-alanine ligase A [Escherichia coli KTE50]
gi|432791626|ref|ZP_20025720.1| D-alanine-D-alanine ligase A [Escherichia coli KTE78]
gi|432797593|ref|ZP_20031621.1| D-alanine-D-alanine ligase A [Escherichia coli KTE79]
gi|432804461|ref|ZP_20038407.1| D-alanine-D-alanine ligase A [Escherichia coli KTE91]
gi|432813873|ref|ZP_20047684.1| D-alanine-D-alanine ligase A [Escherichia coli KTE115]
gi|432848154|ref|ZP_20080026.1| D-alanine-D-alanine ligase A [Escherichia coli KTE144]
gi|432879875|ref|ZP_20096695.1| D-alanine-D-alanine ligase A [Escherichia coli KTE154]
gi|432932717|ref|ZP_20132571.1| D-alanine-D-alanine ligase A [Escherichia coli KTE184]
gi|432945046|ref|ZP_20141341.1| D-alanine-D-alanine ligase A [Escherichia coli KTE196]
gi|432953515|ref|ZP_20145814.1| D-alanine-D-alanine ligase A [Escherichia coli KTE197]
gi|432959765|ref|ZP_20150051.1| D-alanine-D-alanine ligase A [Escherichia coli KTE202]
gi|432966490|ref|ZP_20155410.1| D-alanine-D-alanine ligase A [Escherichia coli KTE203]
gi|433031813|ref|ZP_20219628.1| D-alanine-D-alanine ligase A [Escherichia coli KTE112]
gi|433041860|ref|ZP_20229395.1| D-alanine-D-alanine ligase A [Escherichia coli KTE117]
gi|433046454|ref|ZP_20233886.1| D-alanine-D-alanine ligase A [Escherichia coli KTE120]
gi|433061598|ref|ZP_20248564.1| D-alanine-D-alanine ligase A [Escherichia coli KTE125]
gi|433128710|ref|ZP_20314190.1| D-alanine-D-alanine ligase A [Escherichia coli KTE163]
gi|433133530|ref|ZP_20318913.1| D-alanine-D-alanine ligase A [Escherichia coli KTE166]
gi|433172252|ref|ZP_20356812.1| D-alanine-D-alanine ligase A [Escherichia coli KTE232]
gi|433192310|ref|ZP_20376332.1| D-alanine-D-alanine ligase A [Escherichia coli KTE90]
gi|442590058|ref|ZP_21008842.1| D-alanine--D-alanine ligase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442596508|ref|ZP_21014319.1| D-alanine--D-alanine ligase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443616404|ref|YP_007380260.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O78]
gi|444922687|ref|ZP_21242410.1| D-alanine--D-alanine ligase A [Escherichia coli 09BKT078844]
gi|444929007|ref|ZP_21248162.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0814]
gi|444934357|ref|ZP_21253302.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0815]
gi|444939938|ref|ZP_21258588.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0816]
gi|444945584|ref|ZP_21264006.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0839]
gi|444951083|ref|ZP_21269310.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0848]
gi|444956536|ref|ZP_21274539.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1753]
gi|444961870|ref|ZP_21279627.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1775]
gi|444967572|ref|ZP_21285050.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1793]
gi|444973071|ref|ZP_21290358.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1805]
gi|444983909|ref|ZP_21300779.1| D-alanine--D-alanine ligase A [Escherichia coli PA11]
gi|444989153|ref|ZP_21305895.1| D-alanine--D-alanine ligase A [Escherichia coli PA19]
gi|444994508|ref|ZP_21311105.1| D-alanine--D-alanine ligase A [Escherichia coli PA13]
gi|445000004|ref|ZP_21316468.1| D-alanine--D-alanine ligase A [Escherichia coli PA2]
gi|445005457|ref|ZP_21321799.1| D-alanine--D-alanine ligase A [Escherichia coli PA47]
gi|445010633|ref|ZP_21326827.1| D-alanine--D-alanine ligase A [Escherichia coli PA48]
gi|445016416|ref|ZP_21332467.1| D-alanine--D-alanine ligase A [Escherichia coli PA8]
gi|445021861|ref|ZP_21337784.1| D-alanine--D-alanine ligase A [Escherichia coli 7.1982]
gi|445027100|ref|ZP_21342881.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1781]
gi|445032597|ref|ZP_21348223.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1762]
gi|445038292|ref|ZP_21353763.1| D-alanine--D-alanine ligase A [Escherichia coli PA35]
gi|445043504|ref|ZP_21358844.1| D-alanine--D-alanine ligase A [Escherichia coli 3.4880]
gi|445049079|ref|ZP_21364250.1| D-alanine--D-alanine ligase A [Escherichia coli 95.0083]
gi|445054725|ref|ZP_21369678.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0670]
gi|450185590|ref|ZP_21889152.1| D-alanyl-alanine synthetase A [Escherichia coli SEPT362]
gi|450239383|ref|ZP_21899020.1| D-alanyl-alanine synthetase A [Escherichia coli S17]
gi|452969037|ref|ZP_21967264.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4009]
gi|62288066|sp|P0A6J8.1|DDLA_ECOLI RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|62288067|sp|P0A6J9.1|DDLA_ECO57 RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|62288068|sp|P0A6K0.1|DDLA_SHIFL RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|12513221|gb|AAG54727.1|AE005217_5 hypothetical protein Z0477 [Escherichia coli O157:H7 str. EDL933]
gi|145722|gb|AAA23671.1| D-alanine:D-alanine ligase A [Escherichia coli str. K-12 substr.
W3110]
gi|1657576|gb|AAB18104.1| D-alanine--D-alanine ligase A [Escherichia coli str. K-12 substr.
MG1655]
gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
MG1655]
gi|13359888|dbj|BAB33854.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. Sakai]
gi|24050453|gb|AAN41894.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 301]
gi|30040048|gb|AAP15782.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 2457T]
gi|85674522|dbj|BAE76162.1| D-alanine-D-alanine ligase A [Escherichia coli str. K12 substr.
W3110]
gi|157065578|gb|ABV04833.1| D-alanine--D-alanine ligase A [Escherichia coli HS]
gi|157077066|gb|ABV16774.1| D-alanine--D-alanine ligase A [Escherichia coli E24377A]
gi|169756174|gb|ACA78873.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
gi|169887803|gb|ACB01510.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
DH10B]
gi|170522033|gb|ACB20211.1| D-alanine--D-alanine ligase A [Escherichia coli SMS-3-5]
gi|187768284|gb|EDU32128.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4196]
gi|188015916|gb|EDU54038.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4113]
gi|188999359|gb|EDU68345.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4076]
gi|189355976|gb|EDU74395.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4401]
gi|189362532|gb|EDU80951.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4486]
gi|189368055|gb|EDU86471.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4501]
gi|189377439|gb|EDU95855.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508]
gi|190903247|gb|EDV62969.1| D-alanine--D-alanine ligase A [Escherichia coli B7A]
gi|192927188|gb|EDV81809.1| D-alanine--D-alanine ligase A [Escherichia coli E22]
gi|192958036|gb|EDV88478.1| D-alanine--D-alanine ligase A [Escherichia coli E110019]
gi|194413142|gb|EDX29429.1| D-alanine--D-alanine ligase A [Escherichia coli B171]
gi|194422163|gb|EDX38165.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1]
gi|208728784|gb|EDZ78385.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4206]
gi|208732185|gb|EDZ80873.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4045]
gi|208737048|gb|EDZ84732.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4042]
gi|209161111|gb|ACI38544.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
EC4115]
gi|209744404|gb|ACI70509.1| D-alanine-D-alanine ligase A [Escherichia coli]
gi|209744406|gb|ACI70510.1| D-alanine-D-alanine ligase A [Escherichia coli]
gi|209744408|gb|ACI70511.1| D-alanine-D-alanine ligase A [Escherichia coli]
gi|209744412|gb|ACI70513.1| D-alanine-D-alanine ligase A [Escherichia coli]
gi|209910851|dbj|BAG75925.1| D-alanine-D-alanine ligase [Escherichia coli SE11]
gi|215263535|emb|CAS07865.1| D-alanine-D-alanine ligase A [Escherichia coli O127:H6 str.
E2348/69]
gi|217322576|gb|EEC31000.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
TW14588]
gi|218350572|emb|CAU96260.1| D-alanine-D-alanine ligase A [Escherichia coli 55989]
gi|218359709|emb|CAQ97250.1| D-alanine-D-alanine ligase A [Escherichia coli IAI1]
gi|218368701|emb|CAR16441.1| D-alanine-D-alanine ligase A [Escherichia coli IAI39]
gi|238860727|gb|ACR62725.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952]
gi|253325681|gb|ACT30283.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253972348|gb|ACT38019.1| D-alanylalanine synthetase [Escherichia coli B str. REL606]
gi|253976557|gb|ACT42227.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)]
gi|254590957|gb|ACT70318.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
TW14359]
gi|257752252|dbj|BAI23754.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368]
gi|257757728|dbj|BAI29225.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009]
gi|257762898|dbj|BAI34393.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128]
gi|260450431|gb|ACX40853.1| D-alanine/D-alanine ligase [Escherichia coli DH1]
gi|281599594|gb|ADA72578.1| D-alanine--D-alanine ligase A [Shigella flexneri 2002017]
gi|284920187|emb|CBG33246.1| D-alanine:D-alanine ligase A [Escherichia coli 042]
gi|291324976|gb|EFE64391.1| D-alanine-D-alanine ligase [Escherichia coli B088]
gi|291433690|gb|EFF06663.1| D-alanine-D-alanine ligase [Escherichia coli B185]
gi|291471702|gb|EFF14185.1| D-alanine-D-alanine ligase A [Escherichia coli B354]
gi|299879945|gb|EFI88156.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
gi|300315374|gb|EFJ65158.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
gi|300395989|gb|EFJ79527.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
gi|300404654|gb|EFJ88192.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
gi|300452474|gb|EFK16094.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
gi|300458468|gb|EFK21961.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
gi|300461789|gb|EFK25282.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
gi|300527169|gb|EFK48238.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
gi|300529190|gb|EFK50252.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
gi|300843021|gb|EFK70781.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
gi|301074559|gb|EFK89365.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
gi|308121551|gb|EFO58813.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
gi|309700643|emb|CBI99939.1| D-alanine:D-alanine ligase A [Escherichia coli ETEC H10407]
gi|310337122|gb|EFQ02260.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70]
gi|312290628|gb|EFR18506.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75]
gi|313646690|gb|EFS11149.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T]
gi|313848548|emb|CAQ30849.2| D-alanine-D-alanine ligase A [Escherichia coli BL21(DE3)]
gi|315135064|dbj|BAJ42223.1| D-alanyl-alanine synthetase A [Escherichia coli DH1]
gi|315256200|gb|EFU36168.1| D-ala D-ala ligase [Escherichia coli MS 85-1]
gi|315616714|gb|EFU97331.1| D-alanine--D-alanine ligase [Escherichia coli 3431]
gi|320181640|gb|EFW56555.1| D-alanine--D-alanine ligase [Shigella boydii ATCC 9905]
gi|320192788|gb|EFW67428.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC1212]
gi|320638368|gb|EFX08082.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. G5101]
gi|320643749|gb|EFX12872.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str.
493-89]
gi|320649099|gb|EFX17677.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. H
2687]
gi|320655992|gb|EFX23908.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320662549|gb|EFX29938.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. USDA
5905]
gi|320665119|gb|EFX32212.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
LSU-61]
gi|323152152|gb|EFZ38445.1| D-alanine--D-alanine ligase [Escherichia coli EPECa14]
gi|323160514|gb|EFZ46462.1| D-alanine--D-alanine ligase [Escherichia coli E128010]
gi|323164166|gb|EFZ49973.1| D-alanine--D-alanine ligase [Shigella sonnei 53G]
gi|323178359|gb|EFZ63937.1| D-alanine--D-alanine ligase [Escherichia coli OK1180]
gi|323184795|gb|EFZ70166.1| D-alanine--D-alanine ligase [Escherichia coli OK1357]
gi|323938565|gb|EGB34814.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
gi|323943187|gb|EGB39343.1| D-alanine-D-alanine ligase [Escherichia coli E482]
gi|323945367|gb|EGB41422.1| D-alanine-D-alanine ligase [Escherichia coli H120]
gi|323963366|gb|EGB58928.1| D-alanine-D-alanine ligase [Escherichia coli H489]
gi|323972229|gb|EGB67439.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
gi|324016623|gb|EGB85842.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
gi|324116864|gb|EGC10777.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
gi|326341135|gb|EGD64927.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1044]
gi|326346089|gb|EGD69828.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1125]
gi|331037692|gb|EGI09912.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli H736]
gi|331076104|gb|EGI47386.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli H591]
gi|331080974|gb|EGI52139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli H299]
gi|332341742|gb|AEE55076.1| D-alanine-D-alanine ligase A DdlA [Escherichia coli UMNK88]
gi|332758117|gb|EGJ88442.1| D-alanine--D-alanine ligase [Shigella flexneri 2747-71]
gi|332761807|gb|EGJ92084.1| D-alanine--D-alanine ligase [Shigella flexneri 4343-70]
gi|332764672|gb|EGJ94902.1| D-alanine--D-alanine ligase [Shigella flexneri K-671]
gi|332768638|gb|EGJ98819.1| D-alanine-D-alanine ligase A [Shigella flexneri 2930-71]
gi|333003877|gb|EGK23412.1| D-alanine--D-alanine ligase [Shigella flexneri K-218]
gi|333010817|gb|EGK30243.1| D-alanine--D-alanine ligase [Shigella flexneri K-272]
gi|333021315|gb|EGK40568.1| D-alanine--D-alanine ligase [Shigella flexneri K-227]
gi|333022055|gb|EGK41300.1| D-alanine--D-alanine ligase [Shigella flexneri K-304]
gi|335577134|gb|EGM63362.1| D-alanine-D-alanine ligase A [Shigella flexneri J1713]
gi|338771453|gb|EGP26193.1| D-alanine--D-alanine ligase [Escherichia coli PCN033]
gi|339413327|gb|AEJ54999.1| D-alanine--D-alanine ligase [Escherichia coli UMNF18]
gi|340735629|gb|EGR64685.1| D-alanyl-alanine synthetase A [Escherichia coli O104:H4 str.
01-09591]
gi|340741735|gb|EGR75880.1| D-alanyl-alanine synthetase A [Escherichia coli O104:H4 str.
LB226692]
gi|341920966|gb|EGT70570.1| hypothetical protein C22711_4603 [Escherichia coli O104:H4 str.
C227-11]
gi|342362535|gb|EGU26653.1| D-alanyl-alanine synthetase A [Escherichia coli XH140A]
gi|342930574|gb|EGU99296.1| D-alanine--D-alanine ligase A [Escherichia coli MS 79-10]
gi|344193816|gb|EGV47894.1| D-alanyl-alanine synthetase A [Escherichia coli XH001]
gi|345344020|gb|EGW76396.1| D-alanine--D-alanine ligase [Escherichia coli STEC_B2F1]
gi|345345229|gb|EGW77575.1| D-alanine--D-alanine ligase [Escherichia coli 2534-86]
gi|345354000|gb|EGW86227.1| D-alanine--D-alanine ligase [Escherichia coli STEC_94C]
gi|345361664|gb|EGW93822.1| D-alanine--D-alanine ligase [Escherichia coli 3030-1]
gi|345365580|gb|EGW97687.1| D-alanine--D-alanine ligase [Escherichia coli STEC_DG131-3]
gi|345365896|gb|EGW97994.1| D-alanine--D-alanine ligase [Escherichia coli STEC_EH250]
gi|345386217|gb|EGX16052.1| D-alanine--D-alanine ligase [Escherichia coli STEC_H.1.8]
gi|345391173|gb|EGX20967.1| D-alanine--D-alanine ligase [Escherichia coli STEC_S1191]
gi|345395635|gb|EGX25378.1| D-alanine--D-alanine ligase [Escherichia coli TX1999]
gi|349736480|gb|AEQ11186.1| D-alanine-D-alanine ligase A [Escherichia coli O7:K1 str. CE10]
gi|354858204|gb|EHF18655.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
04-8351]
gi|354860080|gb|EHF20527.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
C227-11]
gi|354866776|gb|EHF27199.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
C236-11]
gi|354877112|gb|EHF37472.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
09-7901]
gi|354879419|gb|EHF39757.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-4404]
gi|354884006|gb|EHF44320.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-3677]
gi|354885807|gb|EHF46099.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-4522]
gi|354888874|gb|EHF49128.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-4623]
gi|354901475|gb|EHF61602.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C1]
gi|354905706|gb|EHF65789.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C2]
gi|354908213|gb|EHF68269.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C3]
gi|354918685|gb|EHF78641.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C5]
gi|354922373|gb|EHF82288.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str. 11-4632
C4]
gi|359331142|dbj|BAL37589.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
MDS42]
gi|371615678|gb|EHO04074.1| D-alanine-D-alanine ligase A [Escherichia coli B093]
gi|373248337|gb|EHP67767.1| D-alanine-D-alanine ligase A [Escherichia coli 4_1_47FAA]
gi|375322456|gb|EHS68212.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H43 str. T22]
gi|377849492|gb|EHU14465.1| D-alanine-D-alanine ligase A [Escherichia coli DEC1A]
gi|377850867|gb|EHU15822.1| D-alanine-D-alanine ligase A [Escherichia coli DEC1C]
gi|377854022|gb|EHU18912.1| D-alanine-D-alanine ligase A [Escherichia coli DEC1B]
gi|377864145|gb|EHU28943.1| D-alanine--D-alanine ligase A [Escherichia coli DEC1D]
gi|377866810|gb|EHU31574.1| D-alanine-D-alanine ligase A [Escherichia coli DEC1E]
gi|377868610|gb|EHU33349.1| D-alanine--D-alanine ligase A [Escherichia coli DEC2A]
gi|377879117|gb|EHU43690.1| D-alanine-D-alanine ligase A [Escherichia coli DEC2B]
gi|377883956|gb|EHU48474.1| D-alanine-D-alanine ligase A [Escherichia coli DEC2D]
gi|377885841|gb|EHU50332.1| D-alanine-D-alanine ligase A [Escherichia coli DEC2C]
gi|377898363|gb|EHU62723.1| D-alanine-D-alanine ligase A [Escherichia coli DEC2E]
gi|377900388|gb|EHU64720.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3A]
gi|377902463|gb|EHU66767.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3B]
gi|377914286|gb|EHU78409.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3C]
gi|377918680|gb|EHU82727.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3D]
gi|377920767|gb|EHU84782.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3E]
gi|377932488|gb|EHU96342.1| D-alanine-D-alanine ligase A [Escherichia coli DEC3F]
gi|377934406|gb|EHU98237.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4A]
gi|377940538|gb|EHV04287.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4B]
gi|377955378|gb|EHV18934.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4E]
gi|377966015|gb|EHV29428.1| D-alanine-D-alanine ligase A [Escherichia coli DEC5A]
gi|377967327|gb|EHV30733.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4F]
gi|377973440|gb|EHV36780.1| D-alanine-D-alanine ligase A [Escherichia coli DEC5B]
gi|377988509|gb|EHV51687.1| D-alanine--D-alanine ligase A [Escherichia coli DEC5E]
gi|378000240|gb|EHV63314.1| D-alanine--D-alanine ligase A [Escherichia coli DEC6A]
gi|378001401|gb|EHV64460.1| D-alanine-D-alanine ligase A [Escherichia coli DEC6B]
gi|378003795|gb|EHV66835.1| D-alanine--D-alanine ligase A [Escherichia coli DEC6C]
gi|378014186|gb|EHV77092.1| D-alanine--D-alanine ligase A [Escherichia coli DEC6D]
gi|378017115|gb|EHV79990.1| D-alanine-D-alanine ligase A [Escherichia coli DEC6E]
gi|378018779|gb|EHV81625.1| D-alanine--D-alanine ligase A [Escherichia coli DEC7A]
gi|378027829|gb|EHV90454.1| D-alanine-D-alanine ligase A [Escherichia coli DEC7C]
gi|378032342|gb|EHV94923.1| D-alanine-D-alanine ligase A [Escherichia coli DEC7D]
gi|378037719|gb|EHW00242.1| D-alanine-D-alanine ligase A [Escherichia coli DEC7B]
gi|378042274|gb|EHW04723.1| D-alanine--D-alanine ligase A [Escherichia coli DEC7E]
gi|378052691|gb|EHW14993.1| D-alanine--D-alanine ligase A [Escherichia coli DEC8A]
gi|378057125|gb|EHW19360.1| D-alanine-D-alanine ligase A [Escherichia coli DEC8B]
gi|378063031|gb|EHW25201.1| D-alanine-D-alanine ligase A [Escherichia coli DEC8C]
gi|378069125|gb|EHW31220.1| D-alanine-D-alanine ligase A [Escherichia coli DEC8D]
gi|378072693|gb|EHW34750.1| D-alanine-D-alanine ligase A [Escherichia coli DEC8E]
gi|378081800|gb|EHW43748.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9A]
gi|378082801|gb|EHW44744.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9B]
gi|378090445|gb|EHW52282.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9C]
gi|378095137|gb|EHW56927.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9D]
gi|378102699|gb|EHW64372.1| D-alanine-D-alanine ligase A [Escherichia coli DEC9E]
gi|378116856|gb|EHW78374.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10B]
gi|378119313|gb|EHW80808.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10C]
gi|378121638|gb|EHW83089.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10D]
gi|378134684|gb|EHW96005.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10E]
gi|378136474|gb|EHW97768.1| D-alanine-D-alanine ligase A [Escherichia coli DEC11A]
gi|378139918|gb|EHX01148.1| D-alanine-D-alanine ligase A [Escherichia coli DEC10F]
gi|378147287|gb|EHX08435.1| D-alanine-D-alanine ligase A [Escherichia coli DEC11B]
gi|378153031|gb|EHX14117.1| D-alanine--D-alanine ligase A [Escherichia coli DEC11D]
gi|378157194|gb|EHX18236.1| D-alanine--D-alanine ligase A [Escherichia coli DEC11C]
gi|378161649|gb|EHX22625.1| D-alanine--D-alanine ligase A [Escherichia coli DEC11E]
gi|378175039|gb|EHX35858.1| D-alanine--D-alanine ligase A [Escherichia coli DEC12A]
gi|378175544|gb|EHX36360.1| D-alanine-D-alanine ligase A [Escherichia coli DEC12B]
gi|378177033|gb|EHX37834.1| D-alanine--D-alanine ligase A [Escherichia coli DEC12C]
gi|378190523|gb|EHX51107.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13A]
gi|378191081|gb|EHX51657.1| D-alanine-D-alanine ligase A [Escherichia coli DEC12E]
gi|378191894|gb|EHX52468.1| D-alanine-D-alanine ligase A [Escherichia coli DEC12D]
gi|378204118|gb|EHX64534.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13B]
gi|378208268|gb|EHX68652.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13D]
gi|378209274|gb|EHX69648.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13C]
gi|378219651|gb|EHX79918.1| D-alanine-D-alanine ligase A [Escherichia coli DEC13E]
gi|378222484|gb|EHX82721.1| D-alanine--D-alanine ligase A [Escherichia coli DEC14A]
gi|378226257|gb|EHX86444.1| D-alanine-D-alanine ligase A [Escherichia coli DEC14B]
gi|378234404|gb|EHX94482.1| D-alanine-D-alanine ligase A [Escherichia coli DEC14C]
gi|378237096|gb|EHX97123.1| D-alanine-D-alanine ligase A [Escherichia coli DEC14D]
gi|378244594|gb|EHY04536.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15A]
gi|378251816|gb|EHY11712.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15B]
gi|378252146|gb|EHY12040.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15C]
gi|378257874|gb|EHY17710.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15D]
gi|378261468|gb|EHY21262.1| D-alanine-D-alanine ligase A [Escherichia coli DEC15E]
gi|383101771|gb|AFG39280.1| D-alanine--D-alanine ligase A [Escherichia coli P12b]
gi|384378030|gb|EIE35922.1| D-ala D-ala ligase [Escherichia coli J53]
gi|384469663|gb|EIE53812.1| D-ala D-ala ligase [Escherichia coli AI27]
gi|385155362|gb|EIF17366.1| D-alanyl-alanine synthetase A [Escherichia coli O32:H37 str. P4]
gi|385539870|gb|EIF86697.1| D-alanine-D-alanine ligase A [Escherichia coli M919]
gi|385712854|gb|EIG49793.1| D-alanine-D-alanine ligase A [Escherichia coli H730]
gi|386123407|gb|EIG72003.1| D-alanine-D-alanine ligase A [Escherichia sp. 4_1_40B]
gi|386149593|gb|EIH00882.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
5.0588]
gi|386157018|gb|EIH13360.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
97.0259]
gi|386164541|gb|EIH26327.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
1.2264]
gi|386169207|gb|EIH35715.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
96.0497]
gi|386177888|gb|EIH55367.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3.2608]
gi|386186407|gb|EIH69123.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
93.0624]
gi|386191910|gb|EIH80651.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
4.0522]
gi|386193059|gb|EIH87358.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
JB1-95]
gi|386199750|gb|EIH98741.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
96.154]
gi|386206421|gb|EII10927.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
5.0959]
gi|386209239|gb|EII19726.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
9.0111]
gi|386216915|gb|EII33404.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
4.0967]
gi|386225920|gb|EII48245.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
2.3916]
gi|386236991|gb|EII68963.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
2.4168]
gi|386237596|gb|EII74540.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3.2303]
gi|386252752|gb|EIJ02443.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli B41]
gi|386257090|gb|EIJ12581.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
900105 (10e)]
gi|386794431|gb|AFJ27465.1| D-alanyl-alanine synthetase A [Escherichia coli Xuzhou21]
gi|388341891|gb|EIL07968.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CVM9534]
gi|388346501|gb|EIL12218.1| D-alanyl-alanine synthetase A [Escherichia coli O103:H2 str.
CVM9450]
gi|388347980|gb|EIL13622.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CVM9545]
gi|388354811|gb|EIL19697.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CVM9570]
gi|388368682|gb|EIL32307.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CVM9574]
gi|388375301|gb|EIL38327.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CVM10026]
gi|388377695|gb|EIL40490.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM9942]
gi|388394301|gb|EIL55604.1| D-alanyl-alanine synthetase A [Escherichia coli 541-15]
gi|388395168|gb|EIL56397.1| D-alanyl-alanine synthetase A [Escherichia coli KD2]
gi|388400792|gb|EIL61490.1| D-alanyl-alanine synthetase A [Escherichia coli 75]
gi|388406244|gb|EIL66650.1| D-alanyl-alanine synthetase A [Escherichia coli 541-1]
gi|388420517|gb|EIL80209.1| D-alanyl-alanine synthetase A [Escherichia coli CUMT8]
gi|390652964|gb|EIN31131.1| D-alanine--D-alanine ligase A [Escherichia coli FDA517]
gi|390653509|gb|EIN31648.1| D-alanine--D-alanine ligase A [Escherichia coli FDA505]
gi|390670031|gb|EIN46619.1| D-alanine--D-alanine ligase A [Escherichia coli 93-001]
gi|390674197|gb|EIN50400.1| D-alanine--D-alanine ligase A [Escherichia coli FRIK1985]
gi|390688797|gb|EIN63824.1| D-alanine--D-alanine ligase A [Escherichia coli PA3]
gi|390692360|gb|EIN67053.1| D-alanine--D-alanine ligase A [Escherichia coli PA9]
gi|390693414|gb|EIN68049.1| D-alanine--D-alanine ligase A [Escherichia coli PA5]
gi|390708583|gb|EIN81798.1| D-alanine--D-alanine ligase A [Escherichia coli PA10]
gi|390710304|gb|EIN83326.1| D-alanine--D-alanine ligase A [Escherichia coli PA15]
gi|390713212|gb|EIN86151.1| D-alanine--D-alanine ligase A [Escherichia coli PA14]
gi|390720168|gb|EIN92880.1| D-alanine--D-alanine ligase A [Escherichia coli PA22]
gi|390733888|gb|EIO05449.1| D-alanine--D-alanine ligase A [Escherichia coli PA25]
gi|390734165|gb|EIO05715.1| D-alanine--D-alanine ligase A [Escherichia coli PA24]
gi|390737228|gb|EIO08536.1| D-alanine--D-alanine ligase A [Escherichia coli PA28]
gi|390752369|gb|EIO22208.1| D-alanine--D-alanine ligase A [Escherichia coli PA31]
gi|390752868|gb|EIO22665.1| D-alanine--D-alanine ligase A [Escherichia coli PA32]
gi|390755428|gb|EIO24970.1| D-alanine--D-alanine ligase A [Escherichia coli PA33]
gi|390778640|gb|EIO46397.1| D-alanine--D-alanine ligase A [Escherichia coli PA42]
gi|390784684|gb|EIO52243.1| D-alanine--D-alanine ligase A [Escherichia coli PA39]
gi|390785798|gb|EIO53340.1| D-alanine--D-alanine ligase A [Escherichia coli TW06591]
gi|390795109|gb|EIO62394.1| D-alanine--D-alanine ligase A [Escherichia coli TW10246]
gi|390801737|gb|EIO68788.1| D-alanine--D-alanine ligase A [Escherichia coli TW11039]
gi|390810428|gb|EIO77189.1| D-alanine--D-alanine ligase A [Escherichia coli TW07945]
gi|390811936|gb|EIO78621.1| D-alanine--D-alanine ligase A [Escherichia coli TW09109]
gi|390819660|gb|EIO85993.1| D-alanine--D-alanine ligase A [Escherichia coli TW10119]
gi|390823188|gb|EIO89254.1| D-alanine--D-alanine ligase A [Escherichia coli TW09098]
gi|390837392|gb|EIP01817.1| D-alanine--D-alanine ligase A [Escherichia coli EC4203]
gi|390840210|gb|EIP04265.1| D-alanine--D-alanine ligase A [Escherichia coli EC4196]
gi|390855816|gb|EIP18492.1| D-alanine--D-alanine ligase A [Escherichia coli TW14301]
gi|390860206|gb|EIP22529.1| D-alanine--D-alanine ligase A [Escherichia coli EC4421]
gi|390860646|gb|EIP22946.1| D-alanine--D-alanine ligase A [Escherichia coli TW14313]
gi|390871903|gb|EIP33277.1| D-alanine--D-alanine ligase A [Escherichia coli EC4422]
gi|390876306|gb|EIP37292.1| D-alanine--D-alanine ligase A [Escherichia coli EC4013]
gi|390886252|gb|EIP46381.1| D-alanine--D-alanine ligase A [Escherichia coli EC4402]
gi|390888242|gb|EIP48131.1| D-alanine--D-alanine ligase A [Escherichia coli EC4439]
gi|390895262|gb|EIP54741.1| D-alanine--D-alanine ligase A [Escherichia coli EC4436]
gi|390903860|gb|EIP62876.1| D-alanine--D-alanine ligase A [Escherichia coli EC1738]
gi|390910718|gb|EIP69443.1| D-alanine--D-alanine ligase A [Escherichia coli EC4437]
gi|390911925|gb|EIP70606.1| D-alanine--D-alanine ligase A [Escherichia coli EC1734]
gi|390915403|gb|EIP73918.1| D-alanine--D-alanine ligase A [Escherichia coli EC4448]
gi|390924954|gb|EIP82690.1| D-alanine--D-alanine ligase A [Escherichia coli EC1863]
gi|390926340|gb|EIP83933.1| D-alanine--D-alanine ligase A [Escherichia coli EC1845]
gi|391254728|gb|EIQ13887.1| D-alanine--D-alanine ligase A [Shigella flexneri 2850-71]
gi|391274743|gb|EIQ33544.1| D-alanine--D-alanine ligase A [Shigella flexneri K-404]
gi|391289201|gb|EIQ47696.1| D-alanine--D-alanine ligase A [Shigella sonnei 3233-85]
gi|391309523|gb|EIQ67191.1| D-alanine--D-alanine ligase A [Escherichia coli EPECa12]
gi|391315259|gb|EIQ72792.1| D-alanine-D-alanine ligase A [Escherichia coli EPEC C342-62]
gi|394390706|gb|EJE67666.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CVM9602]
gi|394394551|gb|EJE71114.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM10224]
gi|394400000|gb|EJE75961.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CVM9634]
gi|394405943|gb|EJE81040.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CVM9553]
gi|394409114|gb|EJE83701.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CVM9455]
gi|394412054|gb|EJE86234.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM10021]
gi|394431041|gb|EJF03284.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM10030]
gi|394433304|gb|EJF05336.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CVM9952]
gi|397786857|gb|EJK97688.1| D-alanine--D-alanine ligase [Escherichia coli STEC_O31]
gi|397903359|gb|EJL19661.1| D-alanine-D-alanine ligase A [Shigella sonnei str. Moseley]
gi|404292744|gb|EJZ49535.1| D-alanine-D-alanine ligase A [Escherichia sp. 1_1_43]
gi|406779157|gb|AFS58581.1| D-alanyl-alanine synthetase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055738|gb|AFS75789.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
2011C-3493]
gi|407063863|gb|AFS84910.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408072478|gb|EKH06799.1| D-alanine--D-alanine ligase A [Escherichia coli PA7]
gi|408086322|gb|EKH19859.1| D-alanine--D-alanine ligase A [Escherichia coli PA34]
gi|408090599|gb|EKH23870.1| D-alanine--D-alanine ligase A [Escherichia coli FDA506]
gi|408095642|gb|EKH28607.1| D-alanine--D-alanine ligase A [Escherichia coli FDA507]
gi|408102787|gb|EKH35176.1| D-alanine--D-alanine ligase A [Escherichia coli FDA504]
gi|408116814|gb|EKH48081.1| D-alanine--D-alanine ligase A [Escherichia coli FRIK1997]
gi|408130353|gb|EKH60501.1| D-alanine--D-alanine ligase A [Escherichia coli NE037]
gi|408141576|gb|EKH71031.1| D-alanine--D-alanine ligase A [Escherichia coli PA4]
gi|408153318|gb|EKH81713.1| D-alanine--D-alanine ligase A [Escherichia coli PA49]
gi|408158557|gb|EKH86674.1| D-alanine--D-alanine ligase A [Escherichia coli PA45]
gi|408167113|gb|EKH94640.1| D-alanine--D-alanine ligase A [Escherichia coli TT12B]
gi|408174673|gb|EKI01637.1| D-alanine--D-alanine ligase A [Escherichia coli 5905]
gi|408192484|gb|EKI18057.1| D-alanine--D-alanine ligase A [Escherichia coli EC96038]
gi|408192595|gb|EKI18167.1| D-alanine--D-alanine ligase A [Escherichia coli 5412]
gi|408198848|gb|EKI24059.1| D-alanine--D-alanine ligase A [Escherichia coli TW15901]
gi|408206166|gb|EKI30978.1| D-alanine--D-alanine ligase A [Escherichia coli TW00353]
gi|408232130|gb|EKI55381.1| D-alanine--D-alanine ligase A [Escherichia coli N1]
gi|408233362|gb|EKI56491.1| D-alanine--D-alanine ligase A [Escherichia coli PA38]
gi|408239461|gb|EKI62209.1| D-alanine--D-alanine ligase A [Escherichia coli EC1735]
gi|408249305|gb|EKI71251.1| D-alanine--D-alanine ligase A [Escherichia coli EC1736]
gi|408253584|gb|EKI75175.1| D-alanine--D-alanine ligase A [Escherichia coli EC1737]
gi|408259713|gb|EKI80867.1| D-alanine--D-alanine ligase A [Escherichia coli EC1846]
gi|408268597|gb|EKI88947.1| D-alanine--D-alanine ligase A [Escherichia coli EC1847]
gi|408270165|gb|EKI90374.1| D-alanine--D-alanine ligase A [Escherichia coli EC1848]
gi|408279083|gb|EKI98745.1| D-alanine--D-alanine ligase A [Escherichia coli EC1849]
gi|408285527|gb|EKJ04551.1| D-alanine--D-alanine ligase A [Escherichia coli EC1850]
gi|408288078|gb|EKJ06916.1| D-alanine--D-alanine ligase A [Escherichia coli EC1856]
gi|408300868|gb|EKJ18545.1| D-alanine--D-alanine ligase A [Escherichia coli EC1862]
gi|408301101|gb|EKJ18755.1| D-alanine--D-alanine ligase A [Escherichia coli EC1864]
gi|408310027|gb|EKJ27111.1| D-alanine--D-alanine ligase A [Escherichia coli EC1865]
gi|408318190|gb|EKJ34405.1| D-alanine--D-alanine ligase A [Escherichia coli EC1868]
gi|408318769|gb|EKJ34971.1| D-alanine--D-alanine ligase A [Escherichia coli EC1866]
gi|408331587|gb|EKJ46731.1| D-alanine--D-alanine ligase A [Escherichia coli EC1869]
gi|408337187|gb|EKJ51923.1| D-alanine--D-alanine ligase A [Escherichia coli NE098]
gi|408338591|gb|EKJ53237.1| D-alanine--D-alanine ligase A [Escherichia coli EC1870]
gi|408350722|gb|EKJ64570.1| D-alanine--D-alanine ligase A [Escherichia coli FRIK523]
gi|408353225|gb|EKJ66747.1| D-alanine--D-alanine ligase A [Escherichia coli 0.1304]
gi|408458793|gb|EKJ82578.1| D-ala D-ala ligase [Escherichia coli AD30]
gi|408559096|gb|EKK35439.1| D-alanine--D-alanine ligase A [Escherichia coli 5.2239]
gi|408559561|gb|EKK35878.1| D-alanine--D-alanine ligase A [Escherichia coli 3.4870]
gi|408560282|gb|EKK36546.1| D-alanine--D-alanine ligase A [Escherichia coli 6.0172]
gi|408573098|gb|EKK48957.1| D-alanine--D-alanine ligase A [Escherichia coli 8.0566]
gi|408573609|gb|EKK49439.1| D-alanine--D-alanine ligase A [Escherichia coli 8.0569]
gi|408585409|gb|EKK60276.1| D-alanine--D-alanine ligase A [Escherichia coli 8.0586]
gi|408590437|gb|EKK64912.1| D-alanine--D-alanine ligase A [Escherichia coli 8.2524]
gi|408592251|gb|EKK66643.1| D-alanine--D-alanine ligase A [Escherichia coli 10.0833]
gi|408604488|gb|EKK78062.1| D-alanine--D-alanine ligase A [Escherichia coli 10.0869]
gi|408605894|gb|EKK79374.1| D-alanine--D-alanine ligase A [Escherichia coli 8.0416]
gi|408611086|gb|EKK84448.1| D-alanine--D-alanine ligase A [Escherichia coli 88.0221]
gi|408617259|gb|EKK90381.1| D-alanine--D-alanine ligase A [Escherichia coli 10.0821]
gi|412961628|emb|CCK45534.1| D-alanine-D-alanine ligase A [Escherichia coli chi7122]
gi|412968243|emb|CCJ42859.1| D-alanine-D-alanine ligase A [Escherichia coli]
gi|421934213|gb|EKT91990.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421945380|gb|EKU02597.1| D-alanyl-alanine synthetase A [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421946731|gb|EKU03845.1| D-alanyl-alanine synthetase A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|427214683|gb|EKV83955.1| D-alanine--D-alanine ligase A [Escherichia coli 88.1042]
gi|427217212|gb|EKV86281.1| D-alanine--D-alanine ligase A [Escherichia coli 89.0511]
gi|427234122|gb|EKW01825.1| D-alanine--D-alanine ligase A [Escherichia coli 90.2281]
gi|427236250|gb|EKW03831.1| D-alanine--D-alanine ligase A [Escherichia coli 90.0091]
gi|427251512|gb|EKW18075.1| D-alanine--D-alanine ligase A [Escherichia coli 93.0056]
gi|427253165|gb|EKW19608.1| D-alanine--D-alanine ligase A [Escherichia coli 93.0055]
gi|427254388|gb|EKW20749.1| D-alanine--D-alanine ligase A [Escherichia coli 94.0618]
gi|427270508|gb|EKW35386.1| D-alanine--D-alanine ligase A [Escherichia coli 95.0943]
gi|427276584|gb|EKW41152.1| D-alanine--D-alanine ligase A [Escherichia coli 95.1288]
gi|427286636|gb|EKW50474.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0428]
gi|427292458|gb|EKW55806.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0427]
gi|427304845|gb|EKW67465.1| D-alanine--D-alanine ligase A [Escherichia coli 97.0003]
gi|427306640|gb|EKW69155.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0932]
gi|427311067|gb|EKW73287.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0107]
gi|427321873|gb|EKW83538.1| D-alanine--D-alanine ligase A [Escherichia coli 97.1742]
gi|427322943|gb|EKW84563.1| D-alanine--D-alanine ligase A [Escherichia coli 97.0007]
gi|427334401|gb|EKW95470.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0713]
gi|427334705|gb|EKW95773.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0678]
gi|429260306|gb|EKY43897.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0109]
gi|429261976|gb|EKY45365.1| D-alanine--D-alanine ligase A [Escherichia coli 97.0010]
gi|429351487|gb|EKY88207.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02030]
gi|429352190|gb|EKY88906.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429352948|gb|EKY89657.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02092]
gi|429366861|gb|EKZ03462.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02093]
gi|429367772|gb|EKZ04364.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02281]
gi|429370267|gb|EKZ06833.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02318]
gi|429382654|gb|EKZ19118.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-02913]
gi|429384887|gb|EKZ21341.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-03943]
gi|429385410|gb|EKZ21863.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-03439]
gi|429397103|gb|EKZ33450.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
11-04080]
gi|429399331|gb|EKZ35652.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429399639|gb|EKZ35959.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429410393|gb|EKZ46615.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429412293|gb|EKZ48490.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429419278|gb|EKZ55416.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427837|gb|EKZ63917.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434681|gb|EKZ70705.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429435505|gb|EKZ71523.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429440046|gb|EKZ76025.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429444646|gb|EKZ80591.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429450951|gb|EKZ86843.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429456443|gb|EKZ92288.1| D-alanine-D-alanine ligase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430888828|gb|ELC11499.1| D-alanine-D-alanine ligase A [Escherichia coli KTE10]
gi|430923044|gb|ELC43782.1| D-alanine-D-alanine ligase A [Escherichia coli KTE21]
gi|430943711|gb|ELC63817.1| D-alanine-D-alanine ligase A [Escherichia coli KTE44]
gi|430974637|gb|ELC91560.1| D-alanine-D-alanine ligase A [Escherichia coli KTE193]
gi|431010760|gb|ELD25104.1| D-alanine-D-alanine ligase A [Escherichia coli KTE210]
gi|431018512|gb|ELD31943.1| D-alanine-D-alanine ligase A [Escherichia coli KTE212]
gi|431078270|gb|ELD85328.1| D-alanine-D-alanine ligase A [Escherichia coli KTE236]
gi|431085575|gb|ELD91680.1| D-alanine-D-alanine ligase A [Escherichia coli KTE237]
gi|431099526|gb|ELE04546.1| D-alanine-D-alanine ligase A [Escherichia coli KTE51]
gi|431108762|gb|ELE12733.1| D-alanine-D-alanine ligase A [Escherichia coli KTE56]
gi|431158097|gb|ELE58718.1| D-alanine-D-alanine ligase A [Escherichia coli KTE75]
gi|431162839|gb|ELE63279.1| D-alanine-D-alanine ligase A [Escherichia coli KTE76]
gi|431165102|gb|ELE65460.1| D-alanine-D-alanine ligase A [Escherichia coli KTE77]
gi|431203741|gb|ELF02331.1| D-alanine-D-alanine ligase A [Escherichia coli KTE111]
gi|431207606|gb|ELF05860.1| D-alanine-D-alanine ligase A [Escherichia coli KTE142]
gi|431213705|gb|ELF11561.1| D-alanine-D-alanine ligase A [Escherichia coli KTE119]
gi|431224987|gb|ELF22196.1| D-alanine-D-alanine ligase A [Escherichia coli KTE143]
gi|431230761|gb|ELF26531.1| D-alanine-D-alanine ligase A [Escherichia coli KTE161]
gi|431247085|gb|ELF41327.1| D-alanine-D-alanine ligase A [Escherichia coli KTE171]
gi|431266992|gb|ELF58525.1| D-alanine-D-alanine ligase A [Escherichia coli KTE9]
gi|431300574|gb|ELF90125.1| D-alanine-D-alanine ligase A [Escherichia coli KTE29]
gi|431313322|gb|ELG01295.1| D-alanine-D-alanine ligase A [Escherichia coli KTE48]
gi|431319222|gb|ELG06906.1| D-alanine-D-alanine ligase A [Escherichia coli KTE50]
gi|431342422|gb|ELG29401.1| D-alanine-D-alanine ligase A [Escherichia coli KTE78]
gi|431345813|gb|ELG32727.1| D-alanine-D-alanine ligase A [Escherichia coli KTE79]
gi|431357794|gb|ELG44460.1| D-alanine-D-alanine ligase A [Escherichia coli KTE91]
gi|431368892|gb|ELG55123.1| D-alanine-D-alanine ligase A [Escherichia coli KTE115]
gi|431402503|gb|ELG85815.1| D-alanine-D-alanine ligase A [Escherichia coli KTE144]
gi|431413499|gb|ELG96264.1| D-alanine-D-alanine ligase A [Escherichia coli KTE154]
gi|431456750|gb|ELH37093.1| D-alanine-D-alanine ligase A [Escherichia coli KTE184]
gi|431462954|gb|ELH43148.1| D-alanine-D-alanine ligase A [Escherichia coli KTE196]
gi|431470645|gb|ELH50542.1| D-alanine-D-alanine ligase A [Escherichia coli KTE197]
gi|431475851|gb|ELH55655.1| D-alanine-D-alanine ligase A [Escherichia coli KTE203]
gi|431478660|gb|ELH58405.1| D-alanine-D-alanine ligase A [Escherichia coli KTE202]
gi|431560120|gb|ELI33641.1| D-alanine-D-alanine ligase A [Escherichia coli KTE112]
gi|431560333|gb|ELI33847.1| D-alanine-D-alanine ligase A [Escherichia coli KTE117]
gi|431572843|gb|ELI45667.1| D-alanine-D-alanine ligase A [Escherichia coli KTE120]
gi|431588302|gb|ELI59587.1| D-alanine-D-alanine ligase A [Escherichia coli KTE125]
gi|431651580|gb|ELJ18819.1| D-alanine-D-alanine ligase A [Escherichia coli KTE163]
gi|431663345|gb|ELJ30107.1| D-alanine-D-alanine ligase A [Escherichia coli KTE166]
gi|431696197|gb|ELJ61384.1| D-alanine-D-alanine ligase A [Escherichia coli KTE232]
gi|431721786|gb|ELJ85778.1| D-alanine-D-alanine ligase A [Escherichia coli KTE90]
gi|441609716|emb|CCP94755.1| D-alanine--D-alanine ligase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441655169|emb|CCQ00232.1| D-alanine--D-alanine ligase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443420912|gb|AGC85816.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O78]
gi|444542594|gb|ELV21944.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0814]
gi|444550863|gb|ELV28881.1| D-alanine--D-alanine ligase A [Escherichia coli 09BKT078844]
gi|444551918|gb|ELV29789.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0815]
gi|444565025|gb|ELV41926.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0839]
gi|444567267|gb|ELV44033.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0816]
gi|444571637|gb|ELV48111.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0848]
gi|444582524|gb|ELV58310.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1753]
gi|444585513|gb|ELV61079.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1775]
gi|444586262|gb|ELV61777.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1793]
gi|444600400|gb|ELV75236.1| D-alanine--D-alanine ligase A [Escherichia coli PA11]
gi|444608683|gb|ELV83185.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1805]
gi|444614856|gb|ELV89081.1| D-alanine--D-alanine ligase A [Escherichia coli PA13]
gi|444615521|gb|ELV89725.1| D-alanine--D-alanine ligase A [Escherichia coli PA19]
gi|444623511|gb|ELV97431.1| D-alanine--D-alanine ligase A [Escherichia coli PA2]
gi|444632603|gb|ELW06158.1| D-alanine--D-alanine ligase A [Escherichia coli PA48]
gi|444633097|gb|ELW06638.1| D-alanine--D-alanine ligase A [Escherichia coli PA47]
gi|444637738|gb|ELW11103.1| D-alanine--D-alanine ligase A [Escherichia coli PA8]
gi|444647916|gb|ELW20872.1| D-alanine--D-alanine ligase A [Escherichia coli 7.1982]
gi|444650227|gb|ELW23073.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1781]
gi|444654111|gb|ELW26805.1| D-alanine--D-alanine ligase A [Escherichia coli 99.1762]
gi|444663094|gb|ELW35339.1| D-alanine--D-alanine ligase A [Escherichia coli PA35]
gi|444667364|gb|ELW39402.1| D-alanine--D-alanine ligase A [Escherichia coli 3.4880]
gi|444672790|gb|ELW44476.1| D-alanine--D-alanine ligase A [Escherichia coli 95.0083]
gi|444674509|gb|ELW46039.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0670]
gi|449325034|gb|EMD14952.1| D-alanyl-alanine synthetase A [Escherichia coli SEPT362]
gi|449325093|gb|EMD15009.1| D-alanyl-alanine synthetase A [Escherichia coli S17]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|420143611|ref|ZP_14651108.1| D-alanine--D-alanine ligase [Lactococcus garvieae IPLA 31405]
gi|391856482|gb|EIT67022.1| D-alanine--D-alanine ligase [Lactococcus garvieae IPLA 31405]
Length = 349
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 161/381 (42%), Gaps = 50/381 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ Y+I + A Q ++ TPA+ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFRVKTYFISQ---AGDFIKTQEFTETPAENEK 64
Query: 142 KLESLAQGFGSLSEFAEHLAANVD-IVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
+ + Q S + A D +VFP +HG GEDG IQ LE + +VG +
Sbjct: 65 LMTN--QTVKSEQKVAPSDIYEKDAVVFPVLHGPMGEDGSIQGFLEIMRLAYVGPNILSA 122
Query: 201 RQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
DK A + G VP E E + V +KL+ V VKP G
Sbjct: 123 SSTMDKLLAKHVFTAVGVPQVPYVAAYADENQEKIHAE--VQDKLN---FPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
SS+G++ ++SL++ + + E D+RVV+E + E VL G+G
Sbjct: 178 SSVGIS----KVNSLEELEAGLAEAYKYDNRVVIEQGV-NAREIECAVL--GNGGKVRST 230
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
LP EV V++ D ++YR KY+ ++ P P V +R A +
Sbjct: 231 --LPGEV---------VKDVD-FYDYRSKYI-DNKIEMAIPADIPAEVAQKMRHYAEKAY 277
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
Q + +R D ++ + G I +IN I G Q S
Sbjct: 278 QAMNGAGLSRCDFFY-----------------DQKGDIYLNEINAIPGFTQWSMYPLLWE 320
Query: 439 KVGFSHSNILRTIIGHACSRF 459
+G S+S ++ ++ A F
Sbjct: 321 NMGLSYSELIEELVSLAQEAF 341
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 112/287 (39%), Gaps = 60/287 (20%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE + Y GP ++++ + MDK+ LA + +GV
Sbjct: 84 EKDAVVFPVLHGPMGEDGSIQGFLEIMRLAYVGPNILSASSTMDKL---LAKHVFTAVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ ++ + I E+ KL VKPA G S G++++ E+L
Sbjct: 141 PQVPYVAAYADENQEK----IHAEVQDKLNFPVF-VKPANMGSSVGISKVNSLEELEA-- 193
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
G+ E K +R++ +
Sbjct: 194 -------------------GLAE--------------------------AYKYDNRVVIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI V+G G + S +P VK+ D K+ I + P + + E
Sbjct: 209 QGVNAREIECAVLGNGGKVRSTLPGEVVKDV-DFYDYRSKYIDNK-IEMAIP--ADIPAE 264
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K + E A+ G SR D F + G++ + E+N +PG T
Sbjct: 265 VAQKMRHYAEKAYQAMNGAGLSRCDFFYD-QKGDIYLNEINAIPGFT 310
>gi|331671933|ref|ZP_08372729.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA280]
gi|422974700|ref|ZP_16976401.1| D-alanine-D-alanine ligase A [Escherichia coli TA124]
gi|432600895|ref|ZP_19837150.1| D-alanine-D-alanine ligase A [Escherichia coli KTE66]
gi|432873041|ref|ZP_20092739.1| D-alanine-D-alanine ligase A [Escherichia coli KTE147]
gi|331070922|gb|EGI42281.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA280]
gi|371595460|gb|EHN84309.1| D-alanine-D-alanine ligase A [Escherichia coli TA124]
gi|431143942|gb|ELE45650.1| D-alanine-D-alanine ligase A [Escherichia coli KTE66]
gi|431405142|gb|ELG88385.1| D-alanine-D-alanine ligase A [Escherichia coli KTE147]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENDVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N +V+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-DVVINEINTLPGFT 323
>gi|417627315|ref|ZP_12277562.1| D-alanine--D-alanine ligase [Escherichia coli STEC_MHI813]
gi|345377619|gb|EGX09550.1| D-alanine--D-alanine ligase [Escherichia coli STEC_MHI813]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIEPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 111/285 (38%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A + E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IEPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|187731227|ref|YP_001879088.1| D-alanyl-alanine synthetase A [Shigella boydii CDC 3083-94]
gi|416270232|ref|ZP_11642729.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
gi|420334546|ref|ZP_14836168.1| D-alanine--D-alanine ligase A [Shigella flexneri K-315]
gi|420378687|ref|ZP_14878185.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 225-75]
gi|187428219|gb|ACD07493.1| D-alanine--D-alanine ligase A [Shigella boydii CDC 3083-94]
gi|320174503|gb|EFW49641.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
gi|391268237|gb|EIQ27165.1| D-alanine--D-alanine ligase A [Shigella flexneri K-315]
gi|391306763|gb|EIQ64515.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 225-75]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 165/395 (41%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN------VDIVFPTIHGRFGEDGGIQEVLE 186
PA + SLAQ S E A N VD++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSATSLAQ-VPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+ A DK D + + + + + F+ + N +S V +KL
Sbjct: 122 VANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 179 --GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C +VL + Y KY+ P
Sbjct: 233 VLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +++++ +I A R
Sbjct: 328 YPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|416895796|ref|ZP_11925680.1| D-alanine--D-alanine ligase [Escherichia coli STEC_7v]
gi|417114425|ref|ZP_11965696.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
1.2741]
gi|422802249|ref|ZP_16850743.1| D-alanine-D-alanine ligase [Escherichia coli M863]
gi|323965327|gb|EGB60785.1| D-alanine-D-alanine ligase [Escherichia coli M863]
gi|327254694|gb|EGE66310.1| D-alanine--D-alanine ligase [Escherichia coli STEC_7v]
gi|386141500|gb|EIG82650.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
1.2741]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDANNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRTNRQNISFAEVKS 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEEYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------TSDFYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AITPEINDMIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R+ + E+ SKL L VKPA G S GV+++ E+ + V
Sbjct: 161 LTRTNRQNIS---------FAEVKSKLGLP-LFVKPANQGSSVGVSKVTSEEEYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--ITPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
D + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DMIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|82775721|ref|YP_402068.1| D-alanyl-alanine synthetase A [Shigella dysenteriae Sd197]
gi|309786933|ref|ZP_07681546.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617]
gi|81239869|gb|ABB60579.1| D-alanine-D-alanine ligase A [Shigella dysenteriae Sd197]
gi|308925259|gb|EFP70753.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 164/397 (41%), Gaps = 63/397 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALSPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + A + E D +V+VE L+ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVTSE-EQYAIAADLAFE-FDHKVIVEQGLK-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL D C +VL + Y KY+ P
Sbjct: 231 CAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPAA 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR A +Q LG AR+D + P + V + T G FT+I
Sbjct: 274 IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNI 325
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ + Q S G +++++ +I A R
Sbjct: 326 SMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 111/285 (38%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E +
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAAD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQG---------LKGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|432430498|ref|ZP_19672943.1| D-alanine-D-alanine ligase A [Escherichia coli KTE187]
gi|432842669|ref|ZP_20076090.1| D-alanine-D-alanine ligase A [Escherichia coli KTE141]
gi|433206532|ref|ZP_20390233.1| D-alanine-D-alanine ligase A [Escherichia coli KTE97]
gi|430956120|gb|ELC74796.1| D-alanine-D-alanine ligase A [Escherichia coli KTE187]
gi|431397197|gb|ELG80653.1| D-alanine-D-alanine ligase A [Escherichia coli KTE141]
gi|431733088|gb|ELJ96529.1| D-alanine-D-alanine ligase A [Escherichia coli KTE97]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AITPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--ITPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|307312242|ref|ZP_07591878.1| D-alanine/D-alanine ligase [Escherichia coli W]
gi|331666726|ref|ZP_08367600.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA271]
gi|378714214|ref|YP_005279107.1| D-alanine--D-alanine ligase [Escherichia coli KO11FL]
gi|386607743|ref|YP_006123229.1| D-alanine--D-alanine ligase [Escherichia coli W]
gi|386702817|ref|YP_006166654.1| D-alanyl-alanine synthetase A [Escherichia coli KO11FL]
gi|386708181|ref|YP_006171902.1| D-alanyl-alanine synthetase A [Escherichia coli W]
gi|416341321|ref|ZP_11675944.1| D-alanine--D-alanine ligase [Escherichia coli EC4100B]
gi|417168535|ref|ZP_12000986.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
99.0741]
gi|417267261|ref|ZP_12054622.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3.3884]
gi|423710150|ref|ZP_17684500.1| D-alanine-D-alanine ligase A [Escherichia coli B799]
gi|432375462|ref|ZP_19618476.1| D-alanine-D-alanine ligase A [Escherichia coli KTE12]
gi|432812491|ref|ZP_20046340.1| D-alanine-D-alanine ligase A [Escherichia coli KTE101]
gi|432833435|ref|ZP_20066983.1| D-alanine-D-alanine ligase A [Escherichia coli KTE136]
gi|306907744|gb|EFN38246.1| D-alanine/D-alanine ligase [Escherichia coli W]
gi|315059660|gb|ADT73987.1| D-alanine-D-alanine ligase A [Escherichia coli W]
gi|320201621|gb|EFW76197.1| D-alanine--D-alanine ligase [Escherichia coli EC4100B]
gi|323379775|gb|ADX52043.1| D-alanine/D-alanine ligase [Escherichia coli KO11FL]
gi|331065950|gb|EGI37834.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA271]
gi|383394344|gb|AFH19302.1| D-alanyl-alanine synthetase A [Escherichia coli KO11FL]
gi|383403873|gb|AFH10116.1| D-alanyl-alanine synthetase A [Escherichia coli W]
gi|385704798|gb|EIG41870.1| D-alanine-D-alanine ligase A [Escherichia coli B799]
gi|386170583|gb|EIH42636.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
99.0741]
gi|386229619|gb|EII56974.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3.3884]
gi|430901366|gb|ELC23334.1| D-alanine-D-alanine ligase A [Escherichia coli KTE12]
gi|431357383|gb|ELG44050.1| D-alanine-D-alanine ligase A [Escherichia coli KTE101]
gi|431388597|gb|ELG72320.1| D-alanine-D-alanine ligase A [Escherichia coli KTE136]
Length = 364
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLLTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|82542872|ref|YP_406819.1| D-alanyl-alanine synthetase A [Shigella boydii Sb227]
gi|416291232|ref|ZP_11649852.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
gi|417680540|ref|ZP_12329925.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74]
gi|420323985|ref|ZP_14825771.1| D-alanine--D-alanine ligase A [Shigella flexneri CCH060]
gi|420351149|ref|ZP_14852348.1| D-alanine--D-alanine ligase A [Shigella boydii 4444-74]
gi|421681079|ref|ZP_16120909.1| D-alanine-D-alanine ligase A [Shigella flexneri 1485-80]
gi|81244283|gb|ABB64991.1| D-alanine-D-alanine ligase A [Shigella boydii Sb227]
gi|320187588|gb|EFW62271.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
gi|332098498|gb|EGJ03464.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74]
gi|391256875|gb|EIQ15997.1| D-alanine--D-alanine ligase A [Shigella flexneri CCH060]
gi|391289004|gb|EIQ47500.1| D-alanine--D-alanine ligase A [Shigella boydii 4444-74]
gi|404341827|gb|EJZ68229.1| D-alanine-D-alanine ligase A [Shigella flexneri 1485-80]
Length = 364
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 165/395 (41%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN------VDIVFPTIHGRFGEDGGIQEVLE 186
PA + SLAQ S E A N VD++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSATSLAQ-VPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+ A DK D + + + + + F+ + N +S V +KL
Sbjct: 122 VANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 179 --RLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C +VL + Y KY+ P
Sbjct: 233 VLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 276 PEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +++++ +I A R
Sbjct: 328 YPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL+ L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLRLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|51598461|ref|YP_072649.1| D-alanyl-alanine synthetase A [Borrelia garinii PBi]
gi|81610159|sp|Q662G4.1|DDL_BORGA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|51573032|gb|AAU07057.1| D-alanine--D-alanine ligase [Borrelia garinii PBi]
Length = 361
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 165/393 (41%), Gaps = 60/393 (15%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + S+ P D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSV--SDPPKLID 64
Query: 141 FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
+ + + F+ + ++D+VFP +HGR GEDG IQ VL+ ++P +G G
Sbjct: 65 IDVLPIVSLLPGIGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 124
Query: 201 RQAFDKYDASLEMSKQGFITVP-------SFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
+ +KY L + VP + L EV N + V+
Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEVKR---------NVREALGYPVI 175
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP GSSIG+ VAY S + + I E + D +++E F+E +I+ +
Sbjct: 176 VKPAVLGSSIGINVAY----SENQIEFFIEEALKYDLTILIEKFIEAREIECSIIGNEKI 231
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVIN 368
+ P EV +Q D IF +Y KY +P + ++ P + +
Sbjct: 232 K------IFSPGEVIVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLL 275
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
SI+E A L+++ L L AR+D +F+ + G I +IN I G
Sbjct: 276 SIKEYAFLVYKNLELRGMARVD-FFVEKKS---------------GKIYLNEINTIPGFT 319
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
S + S G +++ +I +A + N
Sbjct: 320 DISMFAKMCSHDGLQFKDLVDNLINYAFQSYIN 352
Score = 40.4 bits (93), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PA + T L K+ L+ L+L G +R+D FV +G++ + E+NT+PG T
Sbjct: 266 PAQ-LETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKSGKIYLNEINTIPGFT 319
>gi|417120943|ref|ZP_11970397.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
97.0246]
gi|386148673|gb|EIG95108.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
97.0246]
Length = 364
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCTGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCTGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|333926204|ref|YP_004499783.1| D-alanine--D-alanine ligase [Serratia sp. AS12]
gi|333931157|ref|YP_004504735.1| D-alanine--D-alanine ligase [Serratia plymuthica AS9]
gi|386328027|ref|YP_006024197.1| D-alanine--D-alanine ligase [Serratia sp. AS13]
gi|333472764|gb|AEF44474.1| D-alanine--D-alanine ligase [Serratia plymuthica AS9]
gi|333490264|gb|AEF49426.1| D-alanine--D-alanine ligase [Serratia sp. AS12]
gi|333960360|gb|AEG27133.1| D-alanine--D-alanine ligase [Serratia sp. AS13]
Length = 367
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 164/401 (40%), Gaps = 53/401 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + I+ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GQWHINDASNYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAAN-------VDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + + A+ +D+VFP +HG GEDG +Q +L
Sbjct: 63 NPALIALNRSNKNVALIPGQEKQQLIEASSAGALGQLDVVFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK + G P L + N S+ ++ +L
Sbjct: 123 ANMPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTL--TRTNRSKYGFEQLSERLGL 180
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ +KP GSS+GV+ V D + L D +V+VE +AI
Sbjct: 181 ---PLFIKPANQGSSVGVS---KVQDRAGFDAALALAFSFDHKVLVE---------SAI- 224
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
VG +C VL E + G + + DA ++Y KY+ Q P V
Sbjct: 225 --VGREIEC--AVLGNDEPQASLCGEIVL--SDAFYSYDTKYINEQGAKVVVPAEIAPEV 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ IR+ A F+ L AR+D + P + ++ +IN + G
Sbjct: 279 SDKIRDVALKAFRALECFGLARVDVFLTPDN-----------------NVVINEINTLPG 321
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
S + + G S+S ++ +I A R + NS
Sbjct: 322 FTNISMYPKLWAASGVSYSELITRLIELALERHQQDRALNS 362
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 115/285 (40%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
VF VHG +GEDG+LQ LL +P+ G GV+ S MDK T L LA +T
Sbjct: 101 VVFPIVHGTLGEDGSLQGLLRMANMPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R K + +L+ +L L +KPA G S GV+++ +D + A
Sbjct: 161 LTRTNRSKYG---------FEQLSERLGL-PLFIKPANQGSSVGVSKV---QDRAGFDAA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L +FS H ++L S +
Sbjct: 208 LAL--------AFSFDH----------------------KVLVESAIVGR---------- 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G SL + + ++ S + K+ G + P ++ E
Sbjct: 228 ----EIECAVLGNDEPQASLCGEIVLSDA--FYSYDTKYINEQGAKVVVPAE--IAPEVS 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 280 DKIRDVALKAFRALECFGLARVDVFLTPDN-NVVINEINTLPGFT 323
>gi|410678956|ref|YP_006931358.1| D-alanine--D-alanine ligase [Borrelia afzelii HLJ01]
gi|408536344|gb|AFU74475.1| D-alanine--D-alanine ligase [Borrelia afzelii HLJ01]
Length = 309
Score = 91.3 bits (225), Expect = 2e-15, Method: Composition-based stats.
Identities = 94/318 (29%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA SV L + + + YID+ + + + P D D
Sbjct: 7 LIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSVYIDKCTGIWYLLDSVSDPPKPIDTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ +KY L + VP F +++ E+ N + ++VKP
Sbjct: 124 SAISSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKR----NVKEVLGYPIIVKPA 179
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 180 VLGSSIGINVAY----SENQIESCIEEALKYDLTIVIEKFIEAREIECSIIGNEKMK--- 232
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIRE 372
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 ---IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKE 279
Query: 373 GASLLFQRLGLCDFARID 390
A L+++ L L AR+D
Sbjct: 280 YAFLVYKNLELRGMARVD 297
>gi|326330648|ref|ZP_08196952.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1]
gi|325951489|gb|EGD43525.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1]
Length = 318
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 138/350 (39%), Gaps = 75/350 (21%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V +I GG S ER +SL S R+++ + + V Y DR L
Sbjct: 10 VAVIAGGLSHERDVSLASGRNLVRELSALGVEVAAYDFDRAL------------------ 51
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
L +L + + P +HG+FGEDG IQ +LE +P+VGT S +
Sbjct: 52 ---LHNLERD-------------KAVVALPALHGQFGEDGEIQTLLELIGIPYVGTVSTS 95
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
CR AFDK A+ E+ ++G I VP + S + + + + +VVVKP+R
Sbjct: 96 CRVAFDKA-AARELLRRGGIPVPDSVSLSSTTFRDVGAPVLMEHVISRMGERVVVKPSRG 154
Query: 260 GSSIGVTVAYG-------VIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLD 308
GS++GVT G ++ + ++E GID VVV EG T I +D
Sbjct: 155 GSALGVTGVDGLSALPAALVKTYAYCDEALIERFYAGIDVSVVVHETDEGTKPLTPIAID 214
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G + F++ +Y T + P P ++
Sbjct: 215 FSKGHE---------------------------FDFAARY--TAEFVGFGRPDLPDALLT 245
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
+ E A + LG+ D +R D P V G+TE F
Sbjct: 246 ELGETAVRAHELLGMRDISRTDFMVTPDGGFVVLEVAITPGATETSVFPF 295
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L ++ A+HG GEDG +Q+LLE G+PY G + + DK A L
Sbjct: 55 LERDKAVVALPALHGQFGEDGEIQTLLELIGIPYVGTVSTSCRVAFDKAAARELLRR--- 111
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 739
G + + V + + E + + VKP+R G + GV
Sbjct: 112 -GGIPVPDSVSLSSTTFRDVGAPVLMEHVISRMGERVVVKPSRGGSALGV 160
>gi|159900023|ref|YP_001546270.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus DSM 785]
gi|229485958|sp|A9B406.1|DDL_HERA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|159893062|gb|ABX06142.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus DSM 785]
Length = 361
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 156/394 (39%), Gaps = 55/394 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----------LNAYAISS 128
RVG++ GG S E +SL SAR+V++ + + V I RN L +
Sbjct: 5 RVGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQWLSGGDPLLALEQQAD 64
Query: 129 AQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
++ TP ++ Q GSL E + A +D++ P +HG FGEDG IQ V E
Sbjct: 65 QKMLGRTPQAGVVSETAIVQSAGSLPE--QTNVAALDVIIPVLHGPFGEDGTIQGVFEFA 122
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDP 247
N+P+VG G A DK + G VP +L+ + E V +L+
Sbjct: 123 NLPYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEA----VYERLEA 178
Query: 248 N-SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII-LEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+G++ V + + A G+ G D R+VVE G I
Sbjct: 179 TLHYPMFVKPANLGSSVGIS---KVSNRAELATGMAEAAGYDRRIVVEQ----GINAREI 231
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
+ + D P V P E V + ++Y KYL Q + P
Sbjct: 232 EVAILGNDDPKPSV--PGE----------VLPANDFYDYADKYL-EGQTQFAIPAELDAA 278
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+RE A F+ + AR+D F ET G I +IN
Sbjct: 279 TSEQLREMAVTAFKAIDGAGLARVD---------FFVERET-------GAIYINEINTFP 322
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G S + G +S +L +I A R+
Sbjct: 323 GFTAMSQYPKLWEATGLGYSELLDRLIDLAIERY 356
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 120/319 (37%), Gaps = 75/319 (23%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR 701
+HG GEDGT+Q + E +PY G GV+A+ MDK L + A G+ + +
Sbjct: 105 LHGPFGEDGTIQGVFEFANLPYVGCGVLAASVGMDK---GLMKSAFAAAGLPQVPWQLVL 161
Query: 702 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLR 761
+ D P ++ L + L + VKPA G S G++++ +L
Sbjct: 162 RRDWQTQPEA-VYERLEATLHYP-MFVKPANLGSSVGISKVSNRAEL------------- 206
Query: 762 IPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEIT 821
A GM E D + Q N EI
Sbjct: 207 --------ATGMAEAAG-------------YDRRIVVEQGINAR-------------EIE 232
Query: 822 VGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQ 879
V ++G PSV V + D +K+ G P ++E L ++
Sbjct: 233 VAILGN----DDPKPSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQL---RE 285
Query: 880 RIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP-- 937
A+ G +R+D FV + G + I E+NT PG T A+S+ P ++
Sbjct: 286 MAVTAFKAIDGAGLARVDFFVERETGAIYINEINTFPGFT--------AMSQYPKLWEAT 337
Query: 938 ----HQFFRKVLDLGSERF 952
+ +++DL ER+
Sbjct: 338 GLGYSELLDRLIDLAIERY 356
>gi|339448713|ref|ZP_08652269.1| D-alanyl-alanine synthetase A [Lactobacillus fructivorans KCTC
3543]
Length = 378
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 168/395 (42%), Gaps = 62/395 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN------LNAYAISSAQVY 132
V L+ GG S+E +S SA ++ D + D V + I +N ++ + +
Sbjct: 7 HVALLFGGNSSEHDVSKRSAHNIYDAMDKDKYEVSLFLITKNGIVLSNEASHRVFDGENE 66
Query: 133 SNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPF 192
++ D KL+ + + F +++D+ FP IHG GEDG IQ +L N P+
Sbjct: 67 ADVVKDEIPKLD-MNNPLAPIINFDS--TSDIDVFFPIIHGNLGEDGTIQGLLRLMNKPY 123
Query: 193 VGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
VG+G A A+DK D + ++ + I ++L + +W +KL G +
Sbjct: 124 VGSGILASAMAYDK-DITKKILDEAGINNTKYVL----LTPDNRKDWNY-DKLATKLGSL 177
Query: 253 V-VKPTRAGSSIGV-------TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+ +KP GSSIG+ +A G+ D+ + D+++++E +EG E
Sbjct: 178 MFIKPANQGSSIGIHQVHNQAELASGLNDAFR---------YDNKILIEEAIEGPEEVEI 228
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
+L P +L G++ V D + Y K++ QV + P + P
Sbjct: 229 SILGNED----------PKASKL---GAIKVPADDKFYTYDNKFVDASQVQFTIPVQLPD 275
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V + I + A ++ LGL ARID FL S SE +N +
Sbjct: 276 GVDDQITKMALGAYKALGLKGMARID--FLVSKDFKPYLSE---------------VNTL 318
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G S Q G S+++++ +I A + F
Sbjct: 319 PGFTNISLYPQLWEASGISYTDLIDQLIELAYAEF 353
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 125/313 (39%), Gaps = 67/313 (21%)
Query: 614 IADELP---MRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVM 669
+ DE+P M + + I + VF + HG +GEDGT+Q LL PY G G++
Sbjct: 70 VKDEIPKLDMNNPLAPIINFDSTSDIDVFFPIIHGNLGEDGTIQGLLRLMNKPYVGSGIL 129
Query: 670 ASKTCMDKVATSLALNH--LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 727
AS DK T L+ + + + + D R+ + + +L +KL +
Sbjct: 130 ASAMAYDKDITKKILDEAGINNTKYVLLTPDNRKDWN---------YDKLATKLGS-LMF 179
Query: 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 787
+KPA G S G+ ++ +L A G+ + +ILI E
Sbjct: 180 IKPANQGSSIGIHQVHNQAEL---------------------ASGLNDAFRYDNKILI-E 217
Query: 788 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL 847
+E E E+ + ++G S + ++ V
Sbjct: 218 EAIEGPE------------------------EVEISILGNEDPKASKLGAIKVPADDKFY 253
Query: 848 SLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGE 906
+ + KF + + T P + + +D ++ L A AL L+G +RID V+ D
Sbjct: 254 TYDNKFVDASQVQFTIP---VQLPDGVDDQITKMALGAYKALGLKGMARIDFLVSKDFKP 310
Query: 907 VLIIEVNTVPGMT 919
L EVNT+PG T
Sbjct: 311 YL-SEVNTLPGFT 322
>gi|222085556|ref|YP_002544086.1| D-alanyl-alanine synthetase A [Agrobacterium radiobacter K84]
gi|398378324|ref|ZP_10536488.1| D-alanine--D-alanine ligase [Rhizobium sp. AP16]
gi|221723004|gb|ACM26160.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
gi|397725078|gb|EJK85534.1| D-alanine--D-alanine ligase [Rhizobium sp. AP16]
Length = 355
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 164/396 (41%), Gaps = 63/396 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-------LNAYAISSAQ 130
LRV ++ GG S+E +SL SAR+V+ I D + I R+ L A+
Sbjct: 5 LRVAVLFGGQSSEHDVSLMSARNVIKAIDVDKYEIVPIVIRRDGQWLLTALEGGALPDPV 64
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVLE 186
VY+ + ++ L G G + + +DI+FP +HG +GEDG IQ +
Sbjct: 65 VYAGS------EVCLLPGGKGRILAVGDPTGPRELPAIDILFPVLHGLYGEDGSIQGLAR 118
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNESELSNWFVTNKL 245
VP VG G A DK A + G S ++ G ++ E ++
Sbjct: 119 MVGVPLVGCGILGSATAIDKDIAKRLLRDAGLPVARSITVRPGDTLSFEEAASAL----- 173
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFT 303
V VKP R GSS+GV+ A + ++ + ++E DD+V++E F++ E
Sbjct: 174 ---GSPVFVKPVRQGSSVGVSKAA----NAEEFRAALIEAFKHDDKVLIEEFVK-AREIE 225
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL+ G + + G + + + + Y KY+ P + P
Sbjct: 226 CAVLEQTDG-----------TLFVSLPGEIVTGQDHSFYTYDAKYIDEDGAITSVPAQLP 274
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ +RE + F+ LG AR+D + P + V + T G FT+I++
Sbjct: 275 ADLTQHLRELSLDAFRALGCEGLARVDFFVRPDMSMVVNEVNTMPG--------FTNISM 326
Query: 424 I-SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
ME T G S+ ++ +I H +R
Sbjct: 327 YPKAMEAT----------GISYPALVDRLIEHGLAR 352
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 114/288 (39%), Gaps = 70/288 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG++Q L GVP G G++ S T +DK +A L D G+
Sbjct: 99 LFPVLHGLYGEDGSIQGLARMVGVPLVGCGILGSATAIDK---DIAKRLLRDAGLPVARS 155
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R D L + E S L VKP R G S GV++ AE+ + AL E
Sbjct: 156 ITVRPGDTLS------FEEAASALGSPVF-VKPVRQGSSVGVSKAANAEE---FRAALIE 205
Query: 758 CLL---RIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN--KNADRLMWK 812
++ F +A + E + E +TD LF S D +
Sbjct: 206 AFKHDDKVLIEEFVKAREI--------ECAVLE---QTDGTLFVSLPGEIVTGQDHSFYT 254
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
++++++ E G I S+ + PA
Sbjct: 255 YDAKYID----------------------EDGAITSVPAQL-----------PAD----- 276
Query: 873 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L + + + L A AL EG +R+D FV D +++ EVNT+PG T
Sbjct: 277 -LTQHLRELSLDAFRALGCEGLARVDFFVRPDM-SMVVNEVNTMPGFT 322
>gi|432371157|ref|ZP_19614221.1| D-alanine-D-alanine ligase A [Escherichia coli KTE11]
gi|430900370|gb|ELC22389.1| D-alanine-D-alanine ligase A [Escherichia coli KTE11]
Length = 364
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 167/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGR----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N ++S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHKISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + + A + L D +V++E ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTNEEQYAIAVDLAFEFDHKVIIEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPDINDKIRAIAIQAYQALGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 115/286 (40%), Gaps = 66/286 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---L 693
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFI 159
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T+ + R K + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 160 TLTRANRHKIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTNEEQYAIAVD 209
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
L FE F +++ +
Sbjct: 210 ------------------------------LAFE---------FDH--------KVIIEQ 222
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
+ EI V+G S + + + D + + K+ G + P A ++ +
Sbjct: 223 GIKGREIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPDI 278
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + AL G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 279 NDKIRAIAIQAYQALGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|389867174|ref|YP_006369415.1| D-alanine--D-alanine ligase [Modestobacter marinus]
gi|388489378|emb|CCH90956.1| D-alanine--D-alanine ligase [Modestobacter marinus]
Length = 332
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 126/298 (42%), Gaps = 38/298 (12%)
Query: 164 VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223
VD VF +HG GEDG ++ VL+ VP+VG+ + ACR A+DK A + G T
Sbjct: 69 VDAVFIALHGATGEDGALRAVLDLAGVPYVGSPAAACRLAWDKPAAKSVVRSAGVSTPDW 128
Query: 224 FLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282
L S EL V + + G ++VKP GS++GV V D A +
Sbjct: 129 VALPHSTFR--ELGAGAVLDLIVARLGLPLMVKPASGGSALGVQKVSRVED--LPAAMVS 184
Query: 283 LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF 342
D V+VE F++ G E V+D+G G + P +V++ + +F
Sbjct: 185 CFAYGDTVMVERFVD-GVELALSVIDLGEGPEALP--------------AVEIAPESGVF 229
Query: 343 NYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFS 402
+Y +Y P YH+P R V E A + + LGL +R D P
Sbjct: 230 DYTSRYTP-GMTEYHSPARVSEAVAARAAEVALQVHEELGLAGLSRTDAIVTPD------ 282
Query: 403 SSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460
G + F ++N+ G+ +TS G+ ++L ++ A + P
Sbjct: 283 -----------GEVHFLEVNVSPGLTETSMFPMAVEAAGYQLGDVLGRLLARAAAEGP 329
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 115/288 (39%), Gaps = 56/288 (19%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VFIA+HG GEDG L+++L+ GVPY G A + DK A A + + GV T +
Sbjct: 71 AVFIALHGATGEDGALRAVLDLAGVPYVGSPAAACRLAWDKPA---AKSVVRSAGVSTPD 127
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ + + ++L L VKPA G + GV ++ EDL A+
Sbjct: 128 WVALPHSTFRELGAGAVLDLIVARLGLP-LMVKPASGGSALGVQKVSRVEDLP---AAMV 183
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
C A+G + ++ E FV+
Sbjct: 184 SCF----------AYG---------DTVMVERFVD------------------------- 199
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
VE+ + VI G +P+V + + ++ G+ PA + A
Sbjct: 200 GVELALSVI-DLGEGPEALPAVEIAPESGVFDYTSRYT--PGMTEYHSPARVSEAVAARA 256
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ ++ + L L G SR DA V D GEV +EVN PG+T +++
Sbjct: 257 AEVALQ-VHEELGLAGLSRTDAIVTPD-GEVHFLEVNVSPGLTETSMF 302
>gi|158319344|ref|YP_001511851.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
gi|158139543|gb|ABW17855.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
Length = 368
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 165/413 (39%), Gaps = 86/413 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ V ++ GG S E +SL SA SVL + + N+ I+ ++
Sbjct: 4 INVMVVFGGRSGEHEVSLMSATSVLRAMNKEKY---------NITTVGITKKGIWKLYRG 54
Query: 138 DFDF----KLESLAQGFGSLSEFAEHLAA------------------NVDIVFPTIHGRF 175
D + E +A + + F+ +++ +D+VFP +HG F
Sbjct: 55 SIDKIQSGEWEGIADNWAKENNFSTNISVLPSEEGKGIINFGDGKTEKIDVVFPVLHGPF 114
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF-------ITVPSFLLQG 228
GEDG IQ + E N+P+VGTG A A DK MSK+ F +FL++
Sbjct: 115 GEDGTIQGLFEMMNIPYVGTGVLASSLAMDK-----AMSKKLFELEGIPQAKYHAFLVKE 169
Query: 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD 288
+ NE E+ + P V VKP GSS+G+T + + L+KA + + D
Sbjct: 170 YKENEKEVLDTIEEKFTYP----VFVKPANMGSSVGITKVHNR-EKLEKAIELAAK-YDR 223
Query: 289 RVVVELFLEG--GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 346
++VVE EG G E VL G D P+ LP E+ + ++Y
Sbjct: 224 KIVVE---EGINGREIECSVL----GND-EPIASLPAEIIPSAE----------FYDYND 265
Query: 347 KYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 406
KY + P P VI IR + +++ L +R+D + S
Sbjct: 266 KYFAGTS-KFEIPANLPEDVIEGIRSLSVKVYKLLDCSGLSRVDCFIERDSNR------- 317
Query: 407 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
IL ++N + G Q S + G + ++ +I A RF
Sbjct: 318 ---------ILLNEVNTMPGFTQISMYPKMWEATGIEYEELIDRLIELAIERF 361
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 110/263 (41%), Gaps = 52/263 (19%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V V+FGG + E +VSLMS T+V L+A N + NIT +
Sbjct: 6 VMVVFGGRSGEHEVSLMSATSV---LRAMNKEKY-----------------NITTVGITK 45
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ +W L R + +++ + E I + A K++++ T
Sbjct: 46 KGIWKL-----YRGSIDKIQSGEWEGIADNWA------------------KENNFSTNIS 82
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ + IN + E VF +HG GEDGT+Q L E +PY G GV+AS
Sbjct: 83 VLPSEEGKGIIN-FGDGKTEKIDVVFPVLHGPFGEDGTIQGLFEMMNIPYVGTGVLASSL 141
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733
MDK A S L L + + + ++ + ++D E + + VKPA
Sbjct: 142 AMDK-AMSKKLFELEGIPQAKYHAFLVKEYKENEKEVLDTIEEKFT----YPVFVKPANM 196
Query: 734 GCSTGVARLCCAEDLTVYVKALE 756
G S G+ ++ E L KA+E
Sbjct: 197 GSSVGITKVHNREKLE---KAIE 216
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 888 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 947
L G SR+D F+ D+ +L+ EVNT+PG T + ++ + E + + ++++L
Sbjct: 299 LDCSGLSRVDCFIERDSNRILLNEVNTMPGFT--QISMYPKMWEATGIEYEELIDRLIEL 356
Query: 948 GSERF 952
ERF
Sbjct: 357 AIERF 361
>gi|343525721|ref|ZP_08762676.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343395991|gb|EGV08529.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 348
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 167/386 (43%), Gaps = 55/386 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S PAD
Sbjct: 5 QIILLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQ---AGDFIKTQEFSRKPAD 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 62 NE-KLMTNDSIVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G ++E +++ N + V KP
Sbjct: 121 SSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEK-------IAEVEANLTYPVFTKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L+ A + + D RV++E A ++VG
Sbjct: 174 SNMGSSVGISKSENQ-DELRSALELAFK-YDSRVLIE------QGVNAREIEVG------ 219
Query: 317 PVVLLPTE-VELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
LL E V+ G V DV A ++Y KY+ ++ P + VI ++R+
Sbjct: 220 ---LLENEGVKSSLPGEVVKDV----AFYDYEAKYI-DNKITMDIPAKLSEDVIATMRQY 271
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A F +G AR D ++ T+ G I ++N + G Q S
Sbjct: 272 AEKAFHAIGGVGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMY 314
Query: 434 FQQASKVGFSHSNILRTIIGHACSRF 459
+G S+++++ ++ A F
Sbjct: 315 PLLWENMGISYTDLIEKLVLLAQETF 340
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMDKITTKRV---LASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I ++ LT + KP+ G S G+++ ++L
Sbjct: 141 PQVPYVAVIEGENIDEKIAEVEANLTY-----PVFTKPSNMGSSVGISKSENQDELR--- 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
ALE L F K R++ +
Sbjct: 193 SALE---------------------------LAF-----------------KYDSRVLIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++ G SL P VK+ E K+ I + P +S +
Sbjct: 209 QGVNAREIEVGLLENEGVKSSL-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E +A+ G +R D F D GE+ + E+NT+PG T
Sbjct: 264 VIATMRQYAEKAFHAIGGVGLARCD-FFYTDKGEIFLNELNTMPGFT 309
>gi|425078164|ref|ZP_18481267.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425080081|ref|ZP_18483178.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425088797|ref|ZP_18491890.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|428932703|ref|ZP_19006275.1| D-alanyl-alanine synthetase A [Klebsiella pneumoniae JHCK1]
gi|405591143|gb|EKB64656.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405601889|gb|EKB75042.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405607006|gb|EKB79976.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|426306836|gb|EKV68930.1| D-alanyl-alanine synthetase A [Klebsiella pneumoniae JHCK1]
Length = 365
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 161/370 (43%), Gaps = 44/370 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y +
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQ-GLWHINDAGNYLLNAQ 62
Query: 135 TPADFDFKLES--LAQGFGSLS------EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + + LAQ G + E + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALRPSTVTLAQIPGREAQQLINAESGQPLAA-IDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK + G P L + N ++ S V
Sbjct: 122 MANLPFVGSDVLGSAAC---MDKDVTKRLLRDAGLAVAPFITL--TRANRAQFSFADVEA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + +A + E D +VVVE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVKNE-EQYHQAVALAFE-FDHKVVVEQGIK-GREIE 230
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + + Y KY+ Q P
Sbjct: 231 CAVL----GND-HPQASTCGEIVLNSE----------FYAYDTKYIDDQGAQVVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + + V + T G T ++ +
Sbjct: 276 PELNDKIRAIAVQAYQTLGCSGMARVDVFLTADNEVVINEINTLPGFTNIS--MYPKLWQ 333
Query: 424 ISGMEQTSFL 433
SG++ TS +
Sbjct: 334 ASGLDYTSLI 343
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L LA +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + ++ +KL L VKPA G S GV+++ E Y +A
Sbjct: 161 LTRANRAQFS---------FADVEAKLGLP-LFVKPANQGSSVGVSKVKNEEQ---YHQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDHPQASTCGEIVL--NSEFYAYDTKYIDDQGAQVVVPAA--IAPELN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCSGMARVDVFLTADN-EVVINEINTLPGFT 323
>gi|302853819|ref|XP_002958422.1| hypothetical protein VOLCADRAFT_108127 [Volvox carteri f.
nagariensis]
gi|300256227|gb|EFJ40498.1| hypothetical protein VOLCADRAFT_108127 [Volvox carteri f.
nagariensis]
Length = 2829
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 631 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 690
A+ A V +A G + E G LQ LLE GVP GPG D+ + L L
Sbjct: 2292 ARREGAVVLVAGRGEMAECGHLQVLLELNGVPCVGPGSQQMSWLWDRTEAAEMLQDLHAQ 2351
Query: 691 GVLTINKDVRRKEDLLKTPIVDIWH--ELTSKLQCK---------TLCVKPARDGCSTGV 739
GV T + + ED +D H EL +L+ + +L V+PA D TGV
Sbjct: 2352 GVDTPPRFLLPYEDAATAAELDEQHAEELMDRLRSEVVEDPPEGVSLLVRPASDVAGTGV 2411
Query: 740 ARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF-- 797
ARL C D+ Y+ AL + IP ++ S HG I +P PP +L FE FVETD +
Sbjct: 2412 ARLRCGADIVTYMTALRDGDASIPADTLSYPHGEIRLPPRPPPVLSFELFVETDPLFMVL 2471
Query: 798 ------------SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 838
+ + A L + WVE++ ++G G+M L P++
Sbjct: 2472 AAPEAATAAAGAAGAAGGAVAAGLHSRREKGWVEVSFTLMGPLGAMSCLPPAM 2524
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
L PPP ++ ALD +R LIA+ L L+GF +I+AFV D+GE+ + ++N P + P
Sbjct: 2628 LAPPPEEALTAAALDAACKRAALIADRLGLQGFVQIEAFVASDSGELAVYDINGSPDLGP 2687
Query: 921 STVLIHQALSEQPPMYPHQFFRKVLDLG 948
+ + QA + + P F R++L L
Sbjct: 2688 DSPIWRQAAAAG--LLPQDFLRELLGLA 2713
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 340 AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTH 399
A+F+ R V HTPPRF + +++R A+ LF LGL D A ++GW + +
Sbjct: 1161 AVFDPRVTMPAISSVRLHTPPRFSRKLTHAVRHAAARLFGELGLRDVATVEGWVDLPARY 1220
Query: 400 VFSSSETKYGSTE 412
+ ET G E
Sbjct: 1221 ADTVEETMGGKGE 1233
>gi|395242838|ref|ZP_10419829.1| D-alanine--D-alanine ligase [Lactobacillus pasteurii CRBIP 24.76]
gi|394479795|emb|CCI86069.1| D-alanine--D-alanine ligase [Lactobacillus pasteurii CRBIP 24.76]
Length = 360
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 162/389 (41%), Gaps = 53/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VGL+ GG S+E +S+ S ++ D I D V ++ + Y S + D
Sbjct: 6 QVGLLFGGNSSEYEVSIMSGSNIYDAIDKDKFDVHPIWVTND--GYFASEEDSFK-VLKD 62
Query: 139 FDFKLESLAQGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+++++ + +LS E A +D+ FP +HG GEDGG+Q + + PFVG
Sbjct: 63 PKYQVQNPGK-VANLSNLIELTKLAEIDVFFPIVHGNLGEDGGLQGLFRILDKPFVGDDI 121
Query: 198 RACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
A DK + + G +I++ F + +++ +V +KL G +
Sbjct: 122 LAAAVTMDKEFTKILAQRVGINVADWISIKRFEYNDKDNQKTDYD--YVASKL---GGDL 176
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVG 310
VKP+ GSS+GV+ + + ++ + + E DD+V+VE + G TA++
Sbjct: 177 FVKPSNQGSSVGVS----HVTNKEEYQAALAEAFKYDDKVLVEETIHGTEVETAVL---- 228
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D P+V ++ + D+ + Y KY P P + I
Sbjct: 229 -GND-DPIVAGVGQI---------INAADSFYTYENKYDDNSTSKLEIPANIPAETVEQI 277
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R A LF+ ARID P G I+ T++N + G
Sbjct: 278 RANALKLFRVTECSGLARIDSMLTPE-----------------GKIVLTELNALPGFTNI 320
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G ++ ++ +I +R+
Sbjct: 321 SMYPKLFEEAGIPYTELITKLIEAGQARY 349
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 141/342 (41%), Gaps = 79/342 (23%)
Query: 623 SINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK---- 677
+++ I+L K + VF VHG +GEDG LQ L P+ G ++A+ MDK
Sbjct: 75 NLSNLIELTKLAEIDVFFPIVHGNLGEDGGLQGLFRILDKPFVGDDILAAAVTMDKEFTK 134
Query: 678 -VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 736
+A + +N +AD ++I + +D KT + + SKL L VKP+ G S
Sbjct: 135 ILAQRVGIN-VADW--ISIKRFEYNDKDNQKTD----YDYVASKLGGD-LFVKPSNQGSS 186
Query: 737 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 796
GV+ + E+ Y AL E
Sbjct: 187 VGVSHVTNKEE---YQAALAEAF------------------------------------- 206
Query: 797 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 856
K D+++ + E+ V+G + + + + + + + E K+
Sbjct: 207 -------KYDDKVLVEETIHGTEVETAVLGNDDPIVAGVGQI-INAADSFYTYENKYDDN 258
Query: 857 TGINLTPPPASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGEVLII 910
+ L P + + E +++ + ANAL+L G +RID+ + + G++++
Sbjct: 259 STSKLEIP--ANIPAETVEQIR------ANALKLFRVTECSGLARIDSMLTPE-GKIVLT 309
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
E+N +PG T + ++ L E+ + + K+++ G R+
Sbjct: 310 ELNALPGFT--NISMYPKLFEEAGIPYTELITKLIEAGQARY 349
>gi|357239779|ref|ZP_09127113.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
ictaluri 707-05]
gi|356751535|gb|EHI68687.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
ictaluri 707-05]
Length = 348
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 158/341 (46%), Gaps = 46/341 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA S++ + D LV+ Y+I + A Q +S P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESIMRAVNYDKFLVKTYFISQ---AGEFIKTQEFSEKPSETER 64
Query: 142 KLES----LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ + L Q S S+ E A +VFP +HG GEDG IQ LE +P+VGT
Sbjct: 65 LMTNDSIKLEQAI-SPSDIYEEGA----VVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNI 119
Query: 198 RACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
+ A DK + G V + ++G ++ + ++L S + VKP
Sbjct: 120 LSSSLAMDKITTKRVLDSTGIPQVAYTVYIEGQDLEACLIET---QSRL---SFPIFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSSIG++ A LK+A + L+ D R+++E +G + ++ G +
Sbjct: 174 ANMGSSIGISKANNS-KELKEAIALALK-YDSRILIE---QG-----VVAREIEVGLLGN 223
Query: 317 PVV--LLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
VV LP EV KD A ++Y+ KY+ +++ P + + +R
Sbjct: 224 TVVHSTLPGEV-----------VKDVAFYDYQAKYI-DNKISMTIPAELDPELASKMRAY 271
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
A F+ LG C +R D +FL H++ + T G T+W
Sbjct: 272 AEEAFRALGACGLSRCD-FFLDEEGHIYLNELNTMPGFTQW 311
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 124/307 (40%), Gaps = 69/307 (22%)
Query: 621 RHSINEWIKLAK--------ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
R N+ IKL + E A VF +HG +GEDG++Q LE +PY G +++S
Sbjct: 64 RLMTNDSIKLEQAISPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
MDK+ T L+ G+ + V + L+ +++ L+ + VKPA
Sbjct: 124 LAMDKITTKRVLD---STGIPQVAYTVYIEGQDLEACLIETQSRLSFP-----IFVKPAN 175
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S G+++ +++L E L + +S
Sbjct: 176 MGSSIGISKANNSKELK------EAIALALKYDS-------------------------- 203
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
R++ + EI VG++G +HS +P VK+ + K
Sbjct: 204 ---------------RILIEQGVVAREIEVGLLGNT-VVHSTLPGEVVKDVA-FYDYQAK 246
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
+ I++T P + E K + E AL G SR D F++ + G + + E+
Sbjct: 247 YIDNK-ISMTIPAE--LDPELASKMRAYAEEAFRALGACGLSRCDFFLD-EEGHIYLNEL 302
Query: 913 NTVPGMT 919
NT+PG T
Sbjct: 303 NTMPGFT 309
>gi|429218700|ref|YP_007180344.1| D-alanine--D-alanine ligase [Deinococcus peraridilitoris DSM 19664]
gi|429129563|gb|AFZ66578.1| D-alanine--D-alanine ligase [Deinococcus peraridilitoris DSM 19664]
Length = 350
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 152/375 (40%), Gaps = 47/375 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG S E +SL+SARSVL + D V I + S++Q + A
Sbjct: 15 RILLLAGGQSGEHEVSLSSARSVLGALPQDRFSVTPVVISKQGRWLPASASQQALESGA- 73
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
A+ G L A D+VFP +HG GEDG +Q +L +PFVG+G
Sbjct: 74 --------AEEGGELMLHEAARAEGYDVVFPLLHGPMGEDGTVQGLLTLAGIPFVGSGVL 125
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
DK A ++ G VP Q + E V + + VKP
Sbjct: 126 GSAVCMDKIMAKAVLASCG---VPQVAYQLATRPEWREEPQRVIERATALGFPLFVKPAN 182
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ D L A + +D RV++E G L+VG + P
Sbjct: 183 LGSSVGISKVRAAGD-LSSALDLAFS-LDRRVILEAMTRGKPR----ELEVGVLGNDTP- 235
Query: 319 VLLPTEV-ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
L + V EL+F ++Y KY + + H P P V +RE A
Sbjct: 236 --LASPVGELRFDAE--------FYDYHTKYT-EGEASMHIPADVPREVAARVRELAITA 284
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
FQ L AR+D +++ S G + ++N + G TS +
Sbjct: 285 FQALDCAGLARVDFFYVEES----------------GELYLNEVNTMPGFTTTSMYPKLW 328
Query: 438 SKVGFSHSNILRTII 452
G+S+++++ ++
Sbjct: 329 EAAGWSYADLVTRLV 343
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 122/291 (41%), Gaps = 56/291 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E VF +HG +GEDGT+Q LL G+P+ G GV+ S CMDK+ +A LA GV
Sbjct: 89 EGYDVVFPLLHGPMGEDGTVQGLLTLAGIPFVGSGVLGSAVCMDKI---MAKAVLASCGV 145
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + + P I E + L L VKPA G S G++++ A DL+
Sbjct: 146 PQVAYQLATRPEWREEPQRVI--ERATALGFP-LFVKPANLGSSVGISKVRAAGDLS--- 199
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
AL+ S R +I E M +
Sbjct: 200 SALDLAF------SLDRR-------------VILEA---------------------MTR 219
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
G R E+ VGV+G + S P ++ + K+ G P + + E
Sbjct: 220 GKPR--ELEVGVLGNDTPLAS--PVGELRFDAEFYDYHTKYTEGEASMHIP---ADVPRE 272
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
+ ++ AL G +R+D F ++GE+ + EVNT+PG T +++
Sbjct: 273 VAARVRELAITAFQALDCAGLARVDFFYVEESGELYLNEVNTMPGFTTTSM 323
>gi|194290811|ref|YP_002006718.1| d-alanine--d-alanine ligase [Cupriavidus taiwanensis LMG 19424]
gi|229463747|sp|B3R6V7.1|DDL_CUPTR RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|193224646|emb|CAQ70657.1| D-alanine-D-alanine ligase B, affects cell division [Cupriavidus
taiwanensis LMG 19424]
Length = 327
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 159/387 (41%), Gaps = 85/387 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL +Q R ++A+
Sbjct: 16 KVGVLLGGRSAEREISLMSGNGVLAALQ-----------SRGVDAHG------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD L+ + AE AA D VF +HGR+GEDG IQ +LE+ VP+ G+G
Sbjct: 52 FDPGLQGV----------AELAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK G T P F + ++ + + V + P ++VKP R
Sbjct: 102 ASALAMDKQATKRLWMTHGLAT-PRFAMLHADTD----FDAVVADLGLP----LIVKPAR 152
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT A + + KA +D+ V+ E F++ G+E T V+ G +
Sbjct: 153 EGSSIGLTKVTAADQMRAAFDKAA-----ALDNDVIAETFVD-GAELTCPVVGEGDTAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + +A ++Y+ KY T Y P V ++ A
Sbjct: 207 LPV--------------IRIVAPEANYDYQNKYF-TDDTQYLCPSGLDAEVERQVQALAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
++ LG +AR D V ++ GT ++N GM S +
Sbjct: 252 QAYRVLGCRGWARAD---------VMLRAD--------GTPFLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSN-ILRTIIGHACSRFPN 461
A VG S+ + +L+ + PN
Sbjct: 295 AARAVGISYEDFVLQVLAAATLDLHPN 321
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNHL 687
+LA VFIA+HG GEDGT+Q LLE GVPYTG GV+AS MDK AT L + H
Sbjct: 61 ELAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTH- 119
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
G+ T + + + D+ L VKPAR+G S G+ ++ A+
Sbjct: 120 ---GLATPRFAMLHADTDFDAVVADL---------GLPLIVKPAREGSSIGLTKVTAADQ 167
Query: 748 L 748
+
Sbjct: 168 M 168
>gi|418965177|ref|ZP_13516961.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
constellatus subsp. constellatus SK53]
gi|383343562|gb|EID21745.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
constellatus subsp. constellatus SK53]
Length = 350
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 167/386 (43%), Gaps = 55/386 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S+ PAD
Sbjct: 7 QIILLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQ---AGDFIKTQEFSSKPAD 63
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + S + VFP +HG GEDG IQ LE +P+VG
Sbjct: 64 -DEKLMTNDTVIESQKMKPSDIYEEGATVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 122
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G ++E +++ N + V KP
Sbjct: 123 SSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEK-------IAEVEANLTYPVFTKP 175
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L+ A + + D RV++E A ++VG
Sbjct: 176 SNMGSSVGISKSENQ-DELRSALELAFK-YDSRVLIE------QGVNAREIEVG------ 221
Query: 317 PVVLLPTE-VELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
LL E + + G V DV A ++Y KY+ ++ P + VI ++R+
Sbjct: 222 ---LLGNEGAKSSWPGEVVKDV----AFYDYEAKYI-DNKITMDIPAKLSEDVIVTMRQY 273
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A F +G AR D ++ T+ G I ++N + G Q S
Sbjct: 274 AEKAFHAIGGVGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMY 316
Query: 434 FQQASKVGFSHSNILRTIIGHACSRF 459
+G S+++++ ++ A F
Sbjct: 317 PLLWENMGISYTDLIEKLVRLAQEMF 342
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E ATVF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 86 EEGATVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMDKITTKRV---LASAGI 142
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I ++ LT + KP+ G S G+++ ++L
Sbjct: 143 PQVPYVAVIEGENIDEKIAEVEANLTY-----PVFTKPSNMGSSVGISKSENQDELR--- 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
ALE L F + D + Q N
Sbjct: 195 SALE---------------------------LAF----KYDSRVLIEQGVNAR------- 216
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G G+ S P VK+ E K+ I + P +S +
Sbjct: 217 ------EIEVGLLGNEGAKSSW-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 265
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E +A+ G +R D F D GE+ + E+NT+PG T + ++ L E
Sbjct: 266 VIVTMRQYAEKAFHAIGGVGLARCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWEN 322
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K++ L E F
Sbjct: 323 MGISYTDLIEKLVRLAQEMF 342
>gi|184153120|ref|YP_001841461.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri JCM 1112]
gi|183224464|dbj|BAG24981.1| D-alanine--D-alanine ligase [Lactobacillus reuteri JCM 1112]
Length = 382
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 170/390 (43%), Gaps = 50/390 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSNTP 136
L + L+ GG S+E +S SA ++ D + + V + ++ +Q ++ P
Sbjct: 9 LHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEP 68
Query: 137 ADFDFKLESLAQGFGSL---SEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVLEKYN 189
D + +A+ + + S A +A N +D FP IHG GEDG IQ + + N
Sbjct: 69 ED-----QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLN 123
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
P+VG+ A +FDK +S+ G P ++ + N+++ S + KL
Sbjct: 124 KPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVV--TPENQADYSWGRIEEKL---G 178
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
VKP + GSS+G+ + +KA + D +++VE + E +L
Sbjct: 179 NLTFVKPAKQGSSVGIHRVTNA-EEYEKALDDAFK-YDYKILVEQGIANPQEIEISILG- 235
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
+ HP+ G+V V + D ++Y K++ V + P + P +++
Sbjct: 236 ----NEHPIA--------SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDE 283
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
I + A ++ LG+ ARID FL S +V E +T G FT+I+L M +
Sbjct: 284 ITDMALKAYKALGMKGMARID--FLVDSNNVPYLGEP---NTLPG---FTNISLYPQMWE 335
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S G S+S+++ +I F
Sbjct: 336 VS---------GISYSDLIDRLIQLGLQEF 356
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 63/284 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG +GEDGT+Q L + PY G + AS DK T ++
Sbjct: 102 FPVIHGNLGEDGTIQGLFKLLNKPYVGSNIAASAMSFDKDLTKKIISQAG---------- 151
Query: 699 VRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+R ++ TP W + KL T VKPA+ G S G+ R+ AE+ Y KAL
Sbjct: 152 IRNTPYVVVTPENQADYSWGRIEEKLGNLTF-VKPAKQGSSVGIHRVTNAEE---YEKAL 207
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
++ F + + L+ +G +
Sbjct: 208 DDA--------FKYDYKI-----------------------------------LVEQGIA 224
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI + ++G + S + +V V + E KF +G+ P + +D
Sbjct: 225 NPQEIEISILGNEHPIASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVK--LPQYLVD 282
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ AL ++G +RID V+ +N L E NT+PG T
Sbjct: 283 EITDMALKAYKALGMKGMARIDFLVDSNNVPYL-GEPNTLPGFT 325
>gi|304406373|ref|ZP_07388029.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
gi|304344431|gb|EFM10269.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
Length = 377
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 167/408 (40%), Gaps = 71/408 (17%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
G +RVGLI GG S E +SL +A +V+ V+ +YI + +A V
Sbjct: 2 GEKVRVGLIYGGKSGEHEVSLRTALAVMGEFDFSRYEVKPFYITTDGQ---WRTADVLLA 58
Query: 135 TPADFD-FKLESLAQG-------FGSLSEFAEHLAAN---------VDIVFPTIHGRFGE 177
PAD +L Q G+L+ + L A VD++FP +HG FGE
Sbjct: 59 PPADVAALRLGGAEQADAAAIGSGGALAPVFQGLQAGSASHGGNGAVDVIFPLLHGTFGE 118
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
DG IQ +LE N+P+VG G A DK + +G +P + + + +
Sbjct: 119 DGTIQGLLEMANIPYVGAGVLASAVGMDKVMMKKVFAHEG---LPQCMFRYFNRTQWDKE 175
Query: 238 NWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI------DDRV 290
+ +++ + G +KP GSS+G++ A K + ++E I D +V
Sbjct: 176 TDYYVTEIEVSLGYPCFIKPANLGSSVGISKA--------KNREELIEAINYAFRYDRKV 227
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
+VE F++ E VL + P +P E +R + ++Y+ KY+
Sbjct: 228 IVEEFVD-AREIEVSVLG-----NDEPKASVPGE----------IRPSNDFYDYKAKYID 271
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
V P P + ++RE A +Q + +R+D +F+ S
Sbjct: 272 GTSVM-EIPANIPALTSEAVREMAIRAYQAIDGSGLSRVD-FFMRKSD------------ 317
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + ++N + G S + G + +L T+I A R
Sbjct: 318 ---GELFINEVNTMPGFTPFSMYPLMWQETGLPYRELLDTLIELALQR 362
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 116/287 (40%), Gaps = 63/287 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F +HG GEDGT+Q LLE +PY G GV+AS MDKV H L
Sbjct: 107 VIFPLLHGTFGEDGTIQGLLEMANIPYVGAGVLASAVGMDKVMMKKVFAHEGLPQCMFRY 166
Query: 695 INKDVRRKE-DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
N+ KE D T I E++ C +KPA G S G+++ E+L ++
Sbjct: 167 FNRTQWDKETDYYVTEI-----EVSLGYPC---FIKPANLGSSVGISKAKNREEL---IE 215
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
A+ + R +I E FV+ EI S +
Sbjct: 216 AINYAF------RYDRK-------------VIVEEFVDAREIEVSVLGND---------- 246
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
E V G+ ++ S D + K+ GT + P +++EA
Sbjct: 247 -----EPKASVPGE------------IRPSNDFYDYKAKYIDGTSVMEIPANIPALTSEA 289
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
+ + R A+ G SR+D F+ +GE+ I EVNT+PG TP
Sbjct: 290 VREMAIR---AYQAIDGSGLSRVDFFMRKSDGELFINEVNTMPGFTP 333
>gi|300918244|ref|ZP_07134849.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
gi|432529750|ref|ZP_19766794.1| D-alanine-D-alanine ligase A [Escherichia coli KTE233]
gi|432532571|ref|ZP_19769571.1| D-alanine-D-alanine ligase A [Escherichia coli KTE234]
gi|300414587|gb|EFJ97897.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
gi|431057141|gb|ELD66611.1| D-alanine-D-alanine ligase A [Escherichia coli KTE233]
gi|431063763|gb|ELD72977.1| D-alanine-D-alanine ligase A [Escherichia coli KTE234]
Length = 364
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 163/394 (41%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGS-----LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + SLAQ G + VD++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSATSLAQVPGKHERQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+ A DK D + + + + + F+ + N +S V +KL
Sbjct: 123 ANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ V + A + L D +V+VE ++ G E V
Sbjct: 179 -GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREIECAV 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C +VL + Y KY+ P
Sbjct: 234 LGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPAAIAP 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ + IR A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 277 EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNISMY 328
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +++++ +I A R
Sbjct: 329 PKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|7960291|gb|AAF71281.1|AF253562_5 ligase [Enterococcus faecalis]
Length = 349
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 164/386 (42%), Gaps = 56/386 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS--SAQVYSNTP 136
++ +I GG S E +SL SA +V ++I + + I R+ Y + ++ +NT
Sbjct: 5 KIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTW 64
Query: 137 ADFDFKL-------ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ L +GF ++ ++ VD+VFP +HG+ GE+G +Q + E
Sbjct: 65 FEDSKNLCPVVVSQNRSVKGFLEIAS-DKYRIIKVDLVFPVLHGKNGENGTLQGIFELAG 123
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
+P VG + + DK A +S G I+VP + NE N P
Sbjct: 124 IPVVGCDTLSSALCMDKDRAHKLVSLAG-ISVPK-SVTFKRFNEEAAMKEIEANLTYP-- 179
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ +KP RAGSS G+T ++E + +EL E +E IV +
Sbjct: 180 --LFIKPVRAGSSFGITK--------------VIEKQELDAAIELAFEHDTE--VIVEET 221
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY-LPTQQVAYHTPPRFPIVVI 367
+GF+ VL E+ G VD + F+Y KY L + ++ + P R
Sbjct: 222 INGFEVGCAVLGIDEL---IVGRVDEIELSSGFFDYTEKYTLKSSKI--YMPARIDAEAE 276
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
I+E A +++ LG F+R+D ++ PS G I+F ++N I G
Sbjct: 277 KRIQEAAVTIYKALGCSGFSRVDMFYTPS-----------------GEIVFNEVNTIPGF 319
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIG 453
S +G S S +L +IG
Sbjct: 320 TSHSRYPNMMKGIGLSFSQMLDKLIG 345
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GE+GTLQ + E G+P G ++S CMDK + L L +++ K
Sbjct: 101 VFPVLHGKNGENGTLQGIFELAGIPVVGCDTLSSALCMDKDRA----HKLVSLAGISVPK 156
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
V K + + +I LT L +KP R G S G+ ++ ++L
Sbjct: 157 SVTFKRFNEEAAMKEIEANLTY-----PLFIKPVRAGSSFGITKVIEKQEL 202
>gi|384914922|ref|ZP_10015594.1| D-alanine--D-alanine ligase [Methylacidiphilum fumariolicum SolV]
gi|384527220|emb|CCG91462.1| D-alanine--D-alanine ligase [Methylacidiphilum fumariolicum SolV]
Length = 309
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 149/376 (39%), Gaps = 95/376 (25%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ ++ GGPS ER ISL +A +V + L Y ++S V +
Sbjct: 9 ITILKGGPSEERQISLKTASAV------ESALFSL--------GYELTSVDVINE----- 49
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
K E L + +I F IHG FGEDG IQ +L + +PF G+ + +
Sbjct: 50 --KFE---------------LPESTEICFLCIHGTFGEDGQIQRLLMRRGIPFTGSDAAS 92
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
+AFDK S ++ QG I P F + G E K P V+KP+R
Sbjct: 93 SEKAFDKV-WSKKLFVQGGIPTPPFFVVGEE-------------KKVPFGPPYVIKPSRQ 138
Query: 260 GSSIGVTVAYGVID---SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSSIGV Y + D +++K+K D VV+ L G E T +LD +
Sbjct: 139 GSSIGVEFVYAMEDFEEAVRKSKQF------DHVVIAETLIKGRELTVAILDNQA----- 187
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP V+++ K ++Y+ KY Y P + ++++ A
Sbjct: 188 ----LPI---------VEIKPKKGFYDYQNKYTKGAS-EYICPALLTKSQVEAVQKTALD 233
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F LG + R+D +E G +IN I GM +TS
Sbjct: 234 AFHVLGCSIYGRVDIIL-----------------SENGVPWVLEINTIPGMTETSLFPMA 276
Query: 437 ASKVGFSHSNILRTII 452
A G + + + I+
Sbjct: 277 AKAAGLNFAELCEKIV 292
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 118/316 (37%), Gaps = 80/316 (25%)
Query: 612 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
F + EL INE +L E+ F+ +HG GEDG +Q LL G+P+TG +S
Sbjct: 35 FSLGYELTSVDVINEKFELP-ESTEICFLCIHGTFGEDGQIQRLLMRRGIPFTGSDAASS 93
Query: 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
+ DKV + G+ T V +E K P + +KP+
Sbjct: 94 EKAFDKVWSK---KLFVQGGIPTPPFFVVGEEK--KVPFGPPY------------VIKPS 136
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
R G S GV + ED EE + +
Sbjct: 137 RQGSSIGVEFVYAMED-------FEEAVRK------------------------------ 159
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
S Q + + KG E+TV ++ + +P V +K +
Sbjct: 160 ------SKQFDHVVIAETLIKGR----ELTVAILD-----NQALPIVEIKPKKGFYDYQN 204
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEG---FSRIDAFVNVDNGEVL 908
K+ G + P + EA+ K +A + G + R+D ++ +NG
Sbjct: 205 KYTKGASEYICPALLTKSQVEAVQKTA------LDAFHVLGCSIYGRVDIILS-ENGVPW 257
Query: 909 IIEVNTVPGMTPSTVL 924
++E+NT+PGMT +++
Sbjct: 258 VLEINTIPGMTETSLF 273
>gi|242240647|ref|YP_002988828.1| D-alanine--D-alanine ligase [Dickeya dadantii Ech703]
gi|242132704|gb|ACS87006.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703]
Length = 366
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 146/345 (42%), Gaps = 36/345 (10%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
+RVG++ GG S+E +SL SA++++D I V ID+ A+ ++ A Y +N
Sbjct: 4 IRVGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GAWHLNDASNYLLNAN 62
Query: 135 TPADFDFKLESL------AQGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEK 187
P+ S Q L E + A + +D++FP +HG GEDG +Q +L
Sbjct: 63 NPSLIALNRSSRNIALVPGQSHNQLIETSNASALSQIDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+ + DK + G + P L + ++ +T +L
Sbjct: 123 ANIPFVGSSVLGSAVSMDKDVTKRLLRDTGLMVAPFVTLTRANRERHHFAD--ITARL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ +KP GSS+GV+ V + + + + L D +V+VE +AI
Sbjct: 179 -GLPLFIKPANQGSSVGVS---KVRNEAQYQQAVELAFSYDHKVLVE---------SAI- 224
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
VG +C VL E G + V D ++Y KY+ A P P
Sbjct: 225 --VGREIEC--AVLGNDHPEASVCGEIVVH--DEFYSYDTKYISEDGAAVAIPAPMPDST 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
IRE A FQ L AR+D + P + + T G T
Sbjct: 279 HQRIREIAVQAFQALDCQGMARVDVFLTPQEDVIVNEVNTLPGFT 323
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 131/325 (40%), Gaps = 84/325 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL---- 693
+F VHG +GEDG+LQ LL +P+ G V+ S MDK T L D G++
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSSVLGSAVSMDKDVTKRLLR---DTGLMVAPF 158
Query: 694 -TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
T+ + R + + ++T++L L +KPA G S GV+++ + Y
Sbjct: 159 VTLTRANRERHH---------FADITARLGLP-LFIKPANQGSSVGVSKV---RNEAQYQ 205
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+A+E +FS H ++L S +
Sbjct: 206 QAVEL--------AFSYDH----------------------KVLVESAIVGR-------- 227
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF--QGGTGINLTPPPASIMS 870
EI V+G S+ + V + + S + K+ + G + + P
Sbjct: 228 ------EIECAVLGNDHPEASVCGEIVVHD--EFYSYDTKYISEDGAAVAIPAPMP---- 275
Query: 871 TEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926
D QRI IA AL +G +R+D F+ +V++ EVNT+PG T + ++
Sbjct: 276 ----DSTHQRIREIAVQAFQALDCQGMARVDVFLTPQE-DVIVNEVNTLPGFT--NISMY 328
Query: 927 QALSEQPPMYPHQFFRKVLDLGSER 951
L E + ++++L ER
Sbjct: 329 PKLWEATGIGYTALITRLIELAQER 353
>gi|291281284|ref|YP_003498102.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615]
gi|387505390|ref|YP_006157646.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str.
RM12579]
gi|419124528|ref|ZP_13669432.1| D-alanine-D-alanine ligase A [Escherichia coli DEC5C]
gi|419130030|ref|ZP_13674883.1| D-alanine-D-alanine ligase A [Escherichia coli DEC5D]
gi|209744410|gb|ACI70512.1| D-alanine-D-alanine ligase A [Escherichia coli]
gi|290761157|gb|ADD55118.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615]
gi|374357384|gb|AEZ39091.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str.
RM12579]
gi|377981404|gb|EHV44663.1| D-alanine-D-alanine ligase A [Escherichia coli DEC5D]
gi|377981766|gb|EHV45024.1| D-alanine-D-alanine ligase A [Escherichia coli DEC5C]
Length = 364
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVEA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ +KL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVEAKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|148543712|ref|YP_001271082.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri DSM 20016]
gi|227363309|ref|ZP_03847439.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3]
gi|325682083|ref|ZP_08161601.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A]
gi|190359177|sp|A5VIS1.1|DDL_LACRD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|148530746|gb|ABQ82745.1| D-alanine--D-alanine ligase [Lactobacillus reuteri DSM 20016]
gi|227071672|gb|EEI09965.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3]
gi|324978727|gb|EGC15676.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A]
Length = 378
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 170/390 (43%), Gaps = 50/390 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSNTP 136
L + L+ GG S+E +S SA ++ D + + V + ++ +Q ++ P
Sbjct: 5 LHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEP 64
Query: 137 ADFDFKLESLAQGFGSL---SEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVLEKYN 189
D + +A+ + + S A +A N +D FP IHG GEDG IQ + + N
Sbjct: 65 ED-----QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLN 119
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
P+VG+ A +FDK +S+ G P ++ + N+++ S + KL
Sbjct: 120 KPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVV--TPENQADYSWGRIEEKL---G 174
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
VKP + GSS+G+ + +KA + D +++VE + E +L
Sbjct: 175 NLTFVKPAKQGSSVGIHRVTNA-EEYEKALDDAFK-YDYKILVEQGIANPQEIEISILG- 231
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
+ HP+ G+V V + D ++Y K++ V + P + P +++
Sbjct: 232 ----NEHPIA--------SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDE 279
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
I + A ++ LG+ ARID FL S +V E +T G FT+I+L M +
Sbjct: 280 ITDMALKAYKALGMKGMARID--FLVDSNNVPYLGEP---NTLPG---FTNISLYPQMWE 331
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S G S+S+++ +I F
Sbjct: 332 VS---------GISYSDLIDRLIQLGLQEF 352
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 63/284 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG +GEDGT+Q L + PY G + AS DK T ++
Sbjct: 98 FPVIHGNLGEDGTIQGLFKLLNKPYVGSNIAASAMSFDKDLTKKIISQAG---------- 147
Query: 699 VRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+R ++ TP W + KL T VKPA+ G S G+ R+ AE+ Y KAL
Sbjct: 148 IRNTPYVVVTPENQADYSWGRIEEKLGNLTF-VKPAKQGSSVGIHRVTNAEE---YEKAL 203
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
++ F + + L+ +G +
Sbjct: 204 DDA--------FKYDYKI-----------------------------------LVEQGIA 220
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI + ++G + S + +V V + E KF +G+ P + +D
Sbjct: 221 NPQEIEISILGNEHPIASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVK--LPQYLVD 278
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ AL ++G +RID V+ +N L E NT+PG T
Sbjct: 279 EITDMALKAYKALGMKGMARIDFLVDSNNVPYL-GEPNTLPGFT 321
>gi|383788838|ref|YP_005473407.1| D-alanine--D-alanine ligase [Caldisericum exile AZM16c01]
gi|381364475|dbj|BAL81304.1| D-alanine--D-alanine ligase [Caldisericum exile AZM16c01]
Length = 309
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 163/383 (42%), Gaps = 82/383 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG S ER IS+ S ++V D ++ + Y+ D
Sbjct: 4 KVLVLYGGKSTEREISIKSGKAVSDALR----------------------KKGYNVIEHD 41
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
F +E + + N D+VF +HG+FGEDG +Q LE N+P+ G+
Sbjct: 42 FQNHIEDVVK------------ETNPDVVFIALHGKFGEDGTVQGALELLNIPYTGSSVF 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A +K + M ++ + PSF G ++ L +V+ L + +V+KP
Sbjct: 90 ASALCMNKLFSKF-MFREIDVKTPSFAYFG---RDNTLPYSYVSELL--GNSTLVIKPVD 143
Query: 259 AGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GS+IGVT+A D L KA + D V+VE +++ G+E T + +G+ D
Sbjct: 144 QGSTIGVTIARNEEAYNDGLAKAF-----ELSDLVIVEDYIK-GTEITVAI--IGNYPDI 195
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
H +LP +++ +++ KYLP+ + P R E A
Sbjct: 196 H---VLPI---------IEIVPAHEFYDFESKYLPSMS-KHIIPARISTYEKALAEEYAK 242
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
+++ GL DFARID + +S+ V+ ++N I G +TS +
Sbjct: 243 RIYKEFGLRDFARID--MIANSSDVY----------------VLEVNTIPGFTETSLVPD 284
Query: 436 QASKVGFSHSNILRTIIGHACSR 458
A S +++ I+ A R
Sbjct: 285 AAKAENISFEDLVDFIVQEALQR 307
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 130/315 (41%), Gaps = 64/315 (20%)
Query: 620 MRHSINEWIK-LAKE-NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 677
+ H I+ + KE N VFIA+HG GEDGT+Q LE +PYTG V AS CM+K
Sbjct: 38 IEHDFQNHIEDVVKETNPDVVFIALHGKFGEDGTVQGALELLNIPYTGSSVFASALCMNK 97
Query: 678 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 737
+ + ++ V T + +++ L + ++ L TL +KP G +
Sbjct: 98 LFSKFMFR---EIDVKTPSFAYFGRDNTLP------YSYVSELLGNSTLVIKPVDQGSTI 148
Query: 738 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 797
GV A + Y L + E+ + ++I E ++
Sbjct: 149 GV---TIARNEEAYNDGLAKAF---------------ELSD----LVIVEDYI------- 179
Query: 798 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 857
+ EITV +IG +H ++P + + + + E K+
Sbjct: 180 ------------------KGTEITVAIIGNYPDIH-VLPIIEIVPAHEFYDFESKYLPSM 220
Query: 858 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917
++ P S ++ +R I L F+RID N + +V ++EVNT+PG
Sbjct: 221 SKHIIPARISTYEKALAEEYAKR---IYKEFGLRDFARIDMIAN--SSDVYVLEVNTIPG 275
Query: 918 MTPSTVLIHQALSEQ 932
T ++++ A +E
Sbjct: 276 FTETSLVPDAAKAEN 290
>gi|417705892|ref|ZP_12354959.1| D-alanine--D-alanine ligase [Shigella flexneri VA-6]
gi|420329539|ref|ZP_14831245.1| D-alanine--D-alanine ligase A [Shigella flexneri K-1770]
gi|333008568|gb|EGK28036.1| D-alanine--D-alanine ligase [Shigella flexneri VA-6]
gi|391259943|gb|EIQ19015.1| D-alanine--D-alanine ligase A [Shigella flexneri K-1770]
Length = 364
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASATCMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGELVL-----------------TSDFYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS TCMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASATCMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGELVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|322833759|ref|YP_004213786.1| D-alanine--D-alanine ligase [Rahnella sp. Y9602]
gi|384258937|ref|YP_005402871.1| D-alanine--D-alanine ligase [Rahnella aquatilis HX2]
gi|321168960|gb|ADW74659.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
gi|380754913|gb|AFE59304.1| D-alanine--D-alanine ligase [Rahnella aquatilis HX2]
Length = 365
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 158/388 (40%), Gaps = 57/388 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I V ID+ + I+ A Y +
Sbjct: 4 LRVGIIFGGKSAEHEVSLQSAKNIVDAIDKQRFDVTLLGIDKK-GEWHINDASNYLINAE 62
Query: 135 TPADFDFKLE----SLAQGFGSLSEFAEHLAA---NVDIVFPTIHGRFGEDGGIQEVLEK 187
P+ +L G H A+ VD++FP +HG GEDG +Q +L
Sbjct: 63 NPSLIALNRSNNQVALIPGQTENQLIETHSASALSQVDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+ FVG+G + DK + G P L + N + + V+ +L
Sbjct: 123 ANIAFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVCL--TRANRQKNTFASVSQQLGL 180
Query: 248 NSGKVVVKPTRAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+ +KP GSS+GV+ G +L KA D +V+VE ++ G E
Sbjct: 181 ---PLFIKPANQGSSVGVSKVSDEDGYQRALDKAF-----SFDHKVLVESAIK-GREIEC 231
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G D HP + EV L D ++Y KY+ + P P
Sbjct: 232 AVL----GND-HPQASVCGEVILH----------DEFYSYDTKYINESGASIAVPADLPR 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ IR A FQ L AR+D + TE G ++ +IN +
Sbjct: 277 ETHDRIRAIALQAFQVLECRGMARVDVFL-----------------TEQGDVVINEINTL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTII 452
G S + + G S+S ++ +I
Sbjct: 320 PGFTNISMYPKLWAASGLSYSELITRLI 347
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ LL + + G GV+ S MDK T L LA +
Sbjct: 101 VIFPIVHGTLGEDGSLQGLLRMANIAFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVC 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R+K + + ++ +L L +KPA G S GV+++ D Y +A
Sbjct: 161 LTRANRQK---------NTFASVSQQLGL-PLFIKPANQGSSVGVSKVS---DEDGYQRA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L++ +FS H +++ +
Sbjct: 208 LDK--------AFSFDH------------------------------------KVLVESA 223
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
+ EI V+G S+ V + + + S + K+ +G ++ P + + E
Sbjct: 224 IKGREIECAVLGNDHPQASVCGEVILHD--EFYSYDTKYINESGASIAVP--ADLPRETH 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
D+ + L+ G +R+D F+ + G+V+I E+NT+PG T
Sbjct: 280 DRIRAIALQAFQVLECRGMARVDVFL-TEQGDVVINEINTLPGFT 323
>gi|429122552|ref|ZP_19183129.1| D-alanine--D-alanine ligase [Cronobacter sakazakii 680]
gi|426323020|emb|CCK13866.1| D-alanine--D-alanine ligase [Cronobacter sakazakii 680]
Length = 366
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 158/402 (39%), Gaps = 55/402 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG++ GG SAE +SL SA++++D I + V ID+ + +++ N
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAED 63
Query: 138 DFDFKLESLAQGFGSLSEFAEH---------LAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
L + + +E +D++FP +HG GEDG +Q +L
Sbjct: 64 PARIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMA 123
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+PFVG+G + DK A + G P L + N +S V +L
Sbjct: 124 NIPFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRANRQRISFEDVKAQL--- 178
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVL 307
+ VKP GSS+GV+ V D + + L D +VVVE ++ G E VL
Sbjct: 179 GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIK-GREIECAVL 234
Query: 308 --DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
D C +V V +F ++Y KY+ Q P
Sbjct: 235 GNDSPQASTCGEIV-----VSSEF------------YSYDTKYIDDQAARVVVPADIAPD 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 278 VNEKIRAIAIRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISMYP 329
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ Q S G + ++ +I A R A+ S
Sbjct: 330 KLWQAS---------GMGYQELITRLIELALERHQADAALKS 362
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 129/324 (39%), Gaps = 80/324 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+T+ + R++ + ++ ++L L VKPA G S GV+++
Sbjct: 158 FITLTRANRQRIS---------FEDVKAQLGL-PLFVKPANQGSSVGVSKV--------- 198
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
N ++ H + + ++ E +
Sbjct: 199 -------------NDEAQYHAAVALAFEFDHKVVVETGI--------------------- 224
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
KG EI V+G S + V S + S + K+ + P
Sbjct: 225 KGR----EIECAVLGNDSPQASTCGEIVV--SSEFYSYDTKYIDDQAARVVVP------A 272
Query: 872 EALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
+ ++I IA AL+ G +R+D F+ DN EV+I E+NT+PG T + ++
Sbjct: 273 DIAPDVNEKIRAIAIRAFQALECAGLARVDVFLTPDN-EVIINEINTLPGFT--NISMYP 329
Query: 928 ALSEQPPMYPHQFFRKVLDLGSER 951
L + M + ++++L ER
Sbjct: 330 KLWQASGMGYQELITRLIELALER 353
>gi|421843785|ref|ZP_16276945.1| D-alanyl-alanine synthetase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411775506|gb|EKS58952.1| D-alanyl-alanine synthetase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 362
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 111/400 (27%), Positives = 171/400 (42%), Gaps = 71/400 (17%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y S+
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQ-GQWHVSDASNYLLNSD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHL--AAN------VDIVFPTIHGRFGEDGGIQEV 184
PA + SLAQ G + A L A N VD++FP +HG GEDG +Q +
Sbjct: 63 DPAHIALRPSETSLAQVPG---KQAHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGM 119
Query: 185 LEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNW 239
L N+PFVG+ GS AC DK D + + + + + F L + + ++ SE+ +
Sbjct: 120 LRVANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFITLTRANRISFSEVESR 175
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEG 298
+ VKP GSS+GV+ V + + + L D +VVVE ++
Sbjct: 176 L--------GLPLFVKPANQGSSVGVS---KVTSEAQYDQAVALAFEFDHKVVVEQGIK- 223
Query: 299 GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 358
G E VL G D HP E+ L + Y KY+
Sbjct: 224 GREIECAVL----GND-HPQASTCGEIVLNSD----------FYAYDTKYIDDNGATVVV 268
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P + + IRE A +Q LG AR+D VF ++E ++
Sbjct: 269 PAAIAPEINDKIREIAIQAYQTLGCAGMARVD---------VFLTAEND--------VVI 311
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+IN + G S + G +++++ +I A R
Sbjct: 312 NEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 351
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK + K
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDK----------------DVTK 145
Query: 698 DVRRKEDLLKTPIVDI-------WHELTSKLQCKTLCVKPARDGCSTGVARL 742
+ R L P + + + E+ S+L L VKPA G S GV+++
Sbjct: 146 RLLRDAGLNIAPFITLTRANRISFSEVESRLGLP-LFVKPANQGSSVGVSKV 196
>gi|168786212|ref|ZP_02811219.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
gi|261223856|ref|ZP_05938137.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256064|ref|ZP_05948597.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
FRIK966]
gi|419090323|ref|ZP_13635643.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4C]
gi|419096349|ref|ZP_13641593.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4D]
gi|420273436|ref|ZP_14775769.1| D-alanine--D-alanine ligase 1 [Escherichia coli PA40]
gi|421822061|ref|ZP_16257500.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK920]
gi|424088175|ref|ZP_17824451.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1996]
gi|424100800|ref|ZP_17835980.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1990]
gi|424466315|ref|ZP_17916524.1| D-alanine--D-alanine ligase 1 [Escherichia coli PA41]
gi|424491007|ref|ZP_17939429.1| D-alanine--D-alanine ligase 1 [Escherichia coli TW09195]
gi|425177967|ref|ZP_18576036.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1999]
gi|425190864|ref|ZP_18588005.1| D-alanine--D-alanine ligase 1 [Escherichia coli NE1487]
gi|425203859|ref|ZP_18600003.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK2001]
gi|425240770|ref|ZP_18634420.1| D-alanine--D-alanine ligase 1 [Escherichia coli MA6]
gi|428944850|ref|ZP_19017509.1| D-alanine--D-alanine ligase A [Escherichia coli 88.1467]
gi|428969397|ref|ZP_19040039.1| D-alanine--D-alanine ligase A [Escherichia coli 90.0039]
gi|428999720|ref|ZP_19068238.1| D-alanine--D-alanine ligase A [Escherichia coli 95.0183]
gi|429030513|ref|ZP_19096399.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0939]
gi|429064927|ref|ZP_19128797.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0672]
gi|444978616|ref|ZP_21295614.1| D-alanine--D-alanine ligase A [Escherichia coli ATCC 700728]
gi|189373636|gb|EDU92052.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
gi|377950514|gb|EHV14141.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4C]
gi|377951249|gb|EHV14868.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4D]
gi|390650948|gb|EIN29315.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1996]
gi|390673210|gb|EIN49458.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1990]
gi|390762354|gb|EIO31612.1| D-alanine--D-alanine ligase 1 [Escherichia coli PA40]
gi|390776339|gb|EIO44285.1| D-alanine--D-alanine ligase 1 [Escherichia coli PA41]
gi|390842819|gb|EIP06654.1| D-alanine--D-alanine ligase 1 [Escherichia coli TW09195]
gi|408076414|gb|EKH10640.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK920]
gi|408110161|gb|EKH41988.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1999]
gi|408122313|gb|EKH53175.1| D-alanine--D-alanine ligase 1 [Escherichia coli NE1487]
gi|408132437|gb|EKH62413.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK2001]
gi|408172599|gb|EKH99662.1| D-alanine--D-alanine ligase 1 [Escherichia coli MA6]
gi|427217698|gb|EKV86750.1| D-alanine--D-alanine ligase A [Escherichia coli 88.1467]
gi|427234298|gb|EKW01997.1| D-alanine--D-alanine ligase A [Escherichia coli 90.0039]
gi|427270993|gb|EKW35842.1| D-alanine--D-alanine ligase A [Escherichia coli 95.0183]
gi|427293827|gb|EKW57047.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0939]
gi|427336936|gb|EKW97884.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0672]
gi|444599935|gb|ELV74791.1| D-alanine--D-alanine ligase A [Escherichia coli ATCC 700728]
Length = 364
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE + G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGFK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q +KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQG---------FKGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|389842006|ref|YP_006344090.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ES15]
gi|387852482|gb|AFK00580.1| D-alanine--D-alanine ligase A [Cronobacter sakazakii ES15]
Length = 366
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 158/402 (39%), Gaps = 55/402 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG++ GG SAE +SL SA++++D I + V ID+ + +++ N
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAED 63
Query: 138 DFDFKLESLAQGFGSLSEFAEH---------LAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
L + + +E +D++FP +HG GEDG +Q +L
Sbjct: 64 PARIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMA 123
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+PFVG+G + DK A + G P L + N +S V +L
Sbjct: 124 NIPFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRANRQRISFEDVKAQL--- 178
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVL 307
+ VKP GSS+GV+ V D + + L D +VVVE ++ G E VL
Sbjct: 179 GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIK-GREIECAVL 234
Query: 308 --DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
D C +V V +F ++Y KY+ Q P
Sbjct: 235 GNDSPQASTCGEIV-----VSSEF------------YSYDTKYIDDQAARVVVPADIAPD 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 278 VNEKIRAIAIRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISMYP 329
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ Q S G + ++ +I A R A+ S
Sbjct: 330 KLWQAS---------GIGYQELITRLIELALERHQADAALKS 362
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 131/324 (40%), Gaps = 80/324 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+T+ + R++ + ++ ++L L VKPA G S GV+++
Sbjct: 158 FITLTRANRQRIS---------FEDVKAQLGL-PLFVKPANQGSSVGVSKV--------- 198
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
N ++ H + L FE F +++
Sbjct: 199 -------------NDEAQYHAAVA--------LAFE---------FDH--------KVVV 220
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
+ + EI V+G S + V S + S + K+ + P
Sbjct: 221 ETGIKGREIECAVLGNDSPQASTCGEIVV--SSEFYSYDTKYIDDQAARVVVP------A 272
Query: 872 EALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
+ ++I IA AL+ G +R+D F+ DN EV+I E+NT+PG T + ++
Sbjct: 273 DIAPDVNEKIRAIAIRAFQALECAGLARVDVFLTPDN-EVIINEINTLPGFT--NISMYP 329
Query: 928 ALSEQPPMYPHQFFRKVLDLGSER 951
L + + + ++++L ER
Sbjct: 330 KLWQASGIGYQELITRLIELALER 353
>gi|26246382|ref|NP_752421.1| D-alanyl-alanine synthetase A [Escherichia coli CFT073]
gi|91209444|ref|YP_539430.1| D-alanyl-alanine synthetase A [Escherichia coli UTI89]
gi|110640642|ref|YP_668370.1| D-alanyl-alanine synthetase A [Escherichia coli 536]
gi|117622644|ref|YP_851557.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O1]
gi|191173486|ref|ZP_03035013.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
gi|218557291|ref|YP_002390204.1| D-alanyl-alanine synthetase A [Escherichia coli S88]
gi|222155172|ref|YP_002555311.1| D-alanine--D-alanine ligase A [Escherichia coli LF82]
gi|227884616|ref|ZP_04002421.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
gi|237707631|ref|ZP_04538112.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
gi|300988123|ref|ZP_07178560.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
gi|300997436|ref|ZP_07181776.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
gi|301049572|ref|ZP_07196526.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
gi|306813154|ref|ZP_07447347.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
gi|331645551|ref|ZP_08346655.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli M605]
gi|331656432|ref|ZP_08357394.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA206]
gi|386598094|ref|YP_006099600.1| D-alanine--D-alanine ligase [Escherichia coli IHE3034]
gi|386605669|ref|YP_006111969.1| D-alanyl-alanine synthetase A [Escherichia coli UM146]
gi|386627965|ref|YP_006147685.1| D-alanyl-alanine synthetase A [Escherichia coli str. 'clone D i2']
gi|386632885|ref|YP_006152604.1| D-alanyl-alanine synthetase A [Escherichia coli str. 'clone D i14']
gi|386637794|ref|YP_006104592.1| D-alanine--D-alanine ligase [Escherichia coli ABU 83972]
gi|387615697|ref|YP_006118719.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG
857C]
gi|415836204|ref|ZP_11518633.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1]
gi|416334219|ref|ZP_11671212.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327]
gi|417082785|ref|ZP_11951013.1| D-alanyl-alanine synthetase A [Escherichia coli cloneA_i1]
gi|417284694|ref|ZP_12071989.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3003]
gi|417288818|ref|ZP_12076103.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
TW07793]
gi|417660954|ref|ZP_12310535.1| D-alanine--D-alanine ligase [Escherichia coli AA86]
gi|419699294|ref|ZP_14226910.1| D-alanyl-alanine synthetase A [Escherichia coli SCI-07]
gi|419915536|ref|ZP_14433901.1| D-alanyl-alanine synthetase A [Escherichia coli KD1]
gi|419945616|ref|ZP_14462054.1| D-alanyl-alanine synthetase A [Escherichia coli HM605]
gi|422356348|ref|ZP_16437037.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
gi|422363092|ref|ZP_16443640.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
gi|422368640|ref|ZP_16449045.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
gi|422378008|ref|ZP_16458231.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
gi|422378613|ref|ZP_16458820.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
gi|422748552|ref|ZP_16802465.1| D-alanine-D-alanine ligase [Escherichia coli H252]
gi|422753033|ref|ZP_16806860.1| D-alanine-D-alanine ligase [Escherichia coli H263]
gi|422838904|ref|ZP_16886876.1| D-alanine-D-alanine ligase A [Escherichia coli H397]
gi|425276250|ref|ZP_18667595.1| D-alanine--D-alanine ligase A [Escherichia coli ARS4.2123]
gi|425298572|ref|ZP_18688622.1| D-alanine--D-alanine ligase A [Escherichia coli 07798]
gi|432356726|ref|ZP_19599973.1| D-alanine-D-alanine ligase A [Escherichia coli KTE4]
gi|432361133|ref|ZP_19604330.1| D-alanine-D-alanine ligase A [Escherichia coli KTE5]
gi|432380010|ref|ZP_19622974.1| D-alanine-D-alanine ligase A [Escherichia coli KTE15]
gi|432385840|ref|ZP_19628739.1| D-alanine-D-alanine ligase A [Escherichia coli KTE16]
gi|432410451|ref|ZP_19653134.1| D-alanine-D-alanine ligase A [Escherichia coli KTE39]
gi|432435027|ref|ZP_19677428.1| D-alanine-D-alanine ligase A [Escherichia coli KTE188]
gi|432439695|ref|ZP_19682058.1| D-alanine-D-alanine ligase A [Escherichia coli KTE189]
gi|432444819|ref|ZP_19687128.1| D-alanine-D-alanine ligase A [Escherichia coli KTE191]
gi|432455310|ref|ZP_19697512.1| D-alanine-D-alanine ligase A [Escherichia coli KTE201]
gi|432464391|ref|ZP_19706499.1| D-alanine-D-alanine ligase A [Escherichia coli KTE205]
gi|432469815|ref|ZP_19711868.1| D-alanine-D-alanine ligase A [Escherichia coli KTE206]
gi|432494251|ref|ZP_19736069.1| D-alanine-D-alanine ligase A [Escherichia coli KTE214]
gi|432503090|ref|ZP_19744827.1| D-alanine-D-alanine ligase A [Escherichia coli KTE220]
gi|432512590|ref|ZP_19749833.1| D-alanine-D-alanine ligase A [Escherichia coli KTE224]
gi|432522535|ref|ZP_19759674.1| D-alanine-D-alanine ligase A [Escherichia coli KTE230]
gi|432567221|ref|ZP_19803748.1| D-alanine-D-alanine ligase A [Escherichia coli KTE53]
gi|432572377|ref|ZP_19808868.1| D-alanine-D-alanine ligase A [Escherichia coli KTE55]
gi|432582491|ref|ZP_19818901.1| D-alanine-D-alanine ligase A [Escherichia coli KTE57]
gi|432586681|ref|ZP_19823053.1| D-alanine-D-alanine ligase A [Escherichia coli KTE58]
gi|432591501|ref|ZP_19827830.1| D-alanine-D-alanine ligase A [Escherichia coli KTE60]
gi|432596267|ref|ZP_19832556.1| D-alanine-D-alanine ligase A [Escherichia coli KTE62]
gi|432606267|ref|ZP_19842463.1| D-alanine-D-alanine ligase A [Escherichia coli KTE67]
gi|432610116|ref|ZP_19846289.1| D-alanine-D-alanine ligase A [Escherichia coli KTE72]
gi|432644817|ref|ZP_19880620.1| D-alanine-D-alanine ligase A [Escherichia coli KTE86]
gi|432649910|ref|ZP_19885672.1| D-alanine-D-alanine ligase A [Escherichia coli KTE87]
gi|432654392|ref|ZP_19890111.1| D-alanine-D-alanine ligase A [Escherichia coli KTE93]
gi|432697699|ref|ZP_19932871.1| D-alanine-D-alanine ligase A [Escherichia coli KTE169]
gi|432712103|ref|ZP_19947155.1| D-alanine-D-alanine ligase A [Escherichia coli KTE8]
gi|432731104|ref|ZP_19965943.1| D-alanine-D-alanine ligase A [Escherichia coli KTE45]
gi|432744319|ref|ZP_19979024.1| D-alanine-D-alanine ligase A [Escherichia coli KTE43]
gi|432753179|ref|ZP_19987747.1| D-alanine-D-alanine ligase A [Escherichia coli KTE22]
gi|432758164|ref|ZP_19992687.1| D-alanine-D-alanine ligase A [Escherichia coli KTE46]
gi|432777234|ref|ZP_20011488.1| D-alanine-D-alanine ligase A [Escherichia coli KTE59]
gi|432782290|ref|ZP_20016476.1| D-alanine-D-alanine ligase A [Escherichia coli KTE63]
gi|432786030|ref|ZP_20020198.1| D-alanine-D-alanine ligase A [Escherichia coli KTE65]
gi|432800663|ref|ZP_20034653.1| D-alanine-D-alanine ligase A [Escherichia coli KTE84]
gi|432819701|ref|ZP_20053415.1| D-alanine-D-alanine ligase A [Escherichia coli KTE118]
gi|432825830|ref|ZP_20059487.1| D-alanine-D-alanine ligase A [Escherichia coli KTE123]
gi|432897167|ref|ZP_20108163.1| D-alanine-D-alanine ligase A [Escherichia coli KTE192]
gi|432902715|ref|ZP_20112395.1| D-alanine-D-alanine ligase A [Escherichia coli KTE194]
gi|432942255|ref|ZP_20139597.1| D-alanine-D-alanine ligase A [Escherichia coli KTE183]
gi|432970559|ref|ZP_20159437.1| D-alanine-D-alanine ligase A [Escherichia coli KTE207]
gi|432977104|ref|ZP_20165929.1| D-alanine-D-alanine ligase A [Escherichia coli KTE209]
gi|432984074|ref|ZP_20172813.1| D-alanine-D-alanine ligase A [Escherichia coli KTE215]
gi|432994177|ref|ZP_20182794.1| D-alanine-D-alanine ligase A [Escherichia coli KTE218]
gi|432998596|ref|ZP_20187136.1| D-alanine-D-alanine ligase A [Escherichia coli KTE223]
gi|433003908|ref|ZP_20192346.1| D-alanine-D-alanine ligase A [Escherichia coli KTE227]
gi|433011116|ref|ZP_20199521.1| D-alanine-D-alanine ligase A [Escherichia coli KTE229]
gi|433012556|ref|ZP_20200939.1| D-alanine-D-alanine ligase A [Escherichia coli KTE104]
gi|433022129|ref|ZP_20210155.1| D-alanine-D-alanine ligase A [Escherichia coli KTE106]
gi|433027422|ref|ZP_20215298.1| D-alanine-D-alanine ligase A [Escherichia coli KTE109]
gi|433037318|ref|ZP_20224939.1| D-alanine-D-alanine ligase A [Escherichia coli KTE113]
gi|433056720|ref|ZP_20243807.1| D-alanine-D-alanine ligase A [Escherichia coli KTE124]
gi|433071428|ref|ZP_20258130.1| D-alanine-D-alanine ligase A [Escherichia coli KTE129]
gi|433076580|ref|ZP_20263146.1| D-alanine-D-alanine ligase A [Escherichia coli KTE131]
gi|433081329|ref|ZP_20267804.1| D-alanine-D-alanine ligase A [Escherichia coli KTE133]
gi|433085986|ref|ZP_20272390.1| D-alanine-D-alanine ligase A [Escherichia coli KTE137]
gi|433099930|ref|ZP_20286042.1| D-alanine-D-alanine ligase A [Escherichia coli KTE145]
gi|433114333|ref|ZP_20300149.1| D-alanine-D-alanine ligase A [Escherichia coli KTE153]
gi|433118929|ref|ZP_20304643.1| D-alanine-D-alanine ligase A [Escherichia coli KTE157]
gi|433123950|ref|ZP_20309541.1| D-alanine-D-alanine ligase A [Escherichia coli KTE160]
gi|433138011|ref|ZP_20323298.1| D-alanine-D-alanine ligase A [Escherichia coli KTE167]
gi|433142944|ref|ZP_20328123.1| D-alanine-D-alanine ligase A [Escherichia coli KTE168]
gi|433147839|ref|ZP_20332905.1| D-alanine-D-alanine ligase A [Escherichia coli KTE174]
gi|433152526|ref|ZP_20337496.1| D-alanine-D-alanine ligase A [Escherichia coli KTE176]
gi|433162196|ref|ZP_20346961.1| D-alanine-D-alanine ligase A [Escherichia coli KTE179]
gi|433167171|ref|ZP_20351847.1| D-alanine-D-alanine ligase A [Escherichia coli KTE180]
gi|433181912|ref|ZP_20366215.1| D-alanine-D-alanine ligase A [Escherichia coli KTE85]
gi|433187187|ref|ZP_20371316.1| D-alanine-D-alanine ligase A [Escherichia coli KTE88]
gi|433196969|ref|ZP_20380898.1| D-alanine-D-alanine ligase A [Escherichia coli KTE94]
gi|433211312|ref|ZP_20394927.1| D-alanine-D-alanine ligase A [Escherichia coli KTE99]
gi|433324555|ref|ZP_20401842.1| D-alanyl-alanine synthetase A [Escherichia coli J96]
gi|442606645|ref|ZP_21021440.1| D-alanine--D-alanine ligase A [Escherichia coli Nissle 1917]
gi|29336710|sp|Q8FKE3.1|DDLA_ECOL6 RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|26106780|gb|AAN78965.1|AE016756_148 D-alanine--D-alanine ligase A [Escherichia coli CFT073]
gi|91071018|gb|ABE05899.1| D-alanine--D-alanine ligase A [Escherichia coli UTI89]
gi|110342234|gb|ABG68471.1| D-alanine-D-alanine ligase A [Escherichia coli 536]
gi|115511768|gb|ABI99842.1| D-alanine-D-alanine ligase A [Escherichia coli APEC O1]
gi|190906195|gb|EDV65807.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
gi|218364060|emb|CAR01725.1| D-alanine-D-alanine ligase A [Escherichia coli S88]
gi|222032177|emb|CAP74916.1| D-alanine--D-alanine ligase A [Escherichia coli LF82]
gi|226898841|gb|EEH85100.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
gi|227838702|gb|EEJ49168.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
gi|294492292|gb|ADE91048.1| D-alanine--D-alanine ligase A [Escherichia coli IHE3034]
gi|300298663|gb|EFJ55048.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
gi|300304255|gb|EFJ58775.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
gi|300407537|gb|EFJ91075.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
gi|305853917|gb|EFM54356.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
gi|307552286|gb|ADN45061.1| D-alanine--D-alanine ligase A [Escherichia coli ABU 83972]
gi|307628153|gb|ADN72457.1| D-alanyl-alanine synthetase A [Escherichia coli UM146]
gi|312944958|gb|ADR25785.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG
857C]
gi|315289818|gb|EFU49208.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
gi|315294151|gb|EFU53502.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
gi|315299609|gb|EFU58857.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
gi|320197185|gb|EFW71802.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327]
gi|323191488|gb|EFZ76750.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1]
gi|323953007|gb|EGB48875.1| D-alanine-D-alanine ligase [Escherichia coli H252]
gi|323958573|gb|EGB54276.1| D-alanine-D-alanine ligase [Escherichia coli H263]
gi|324010139|gb|EGB79358.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
gi|324010730|gb|EGB79949.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
gi|330910172|gb|EGH38682.1| D-alanine--D-alanine ligase [Escherichia coli AA86]
gi|331045713|gb|EGI17839.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli M605]
gi|331054680|gb|EGI26689.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA206]
gi|355353323|gb|EHG02493.1| D-alanyl-alanine synthetase A [Escherichia coli cloneA_i1]
gi|355418864|gb|AER83061.1| D-alanyl-alanine synthetase A [Escherichia coli str. 'clone D i2']
gi|355423784|gb|AER87980.1| D-alanyl-alanine synthetase A [Escherichia coli str. 'clone D i14']
gi|371611375|gb|EHN99897.1| D-alanine-D-alanine ligase A [Escherichia coli H397]
gi|380349309|gb|EIA37581.1| D-alanyl-alanine synthetase A [Escherichia coli SCI-07]
gi|386242903|gb|EII84638.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3003]
gi|386247610|gb|EII93783.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
TW07793]
gi|388383880|gb|EIL45628.1| D-alanyl-alanine synthetase A [Escherichia coli KD1]
gi|388415219|gb|EIL75152.1| D-alanyl-alanine synthetase A [Escherichia coli HM605]
gi|408207286|gb|EKI32036.1| D-alanine--D-alanine ligase A [Escherichia coli ARS4.2123]
gi|408221575|gb|EKI45508.1| D-alanine--D-alanine ligase A [Escherichia coli 07798]
gi|430879536|gb|ELC02867.1| D-alanine-D-alanine ligase A [Escherichia coli KTE4]
gi|430891368|gb|ELC13904.1| D-alanine-D-alanine ligase A [Escherichia coli KTE5]
gi|430909889|gb|ELC31247.1| D-alanine-D-alanine ligase A [Escherichia coli KTE16]
gi|430911989|gb|ELC33240.1| D-alanine-D-alanine ligase A [Escherichia coli KTE15]
gi|430938387|gb|ELC58628.1| D-alanine-D-alanine ligase A [Escherichia coli KTE39]
gi|430966606|gb|ELC83969.1| D-alanine-D-alanine ligase A [Escherichia coli KTE188]
gi|430969505|gb|ELC86609.1| D-alanine-D-alanine ligase A [Escherichia coli KTE189]
gi|430976194|gb|ELC93069.1| D-alanine-D-alanine ligase A [Escherichia coli KTE191]
gi|430985182|gb|ELD01788.1| D-alanine-D-alanine ligase A [Escherichia coli KTE201]
gi|430997142|gb|ELD13409.1| D-alanine-D-alanine ligase A [Escherichia coli KTE205]
gi|430999882|gb|ELD15956.1| D-alanine-D-alanine ligase A [Escherichia coli KTE206]
gi|431027767|gb|ELD40812.1| D-alanine-D-alanine ligase A [Escherichia coli KTE214]
gi|431042092|gb|ELD52584.1| D-alanine-D-alanine ligase A [Escherichia coli KTE220]
gi|431044910|gb|ELD55165.1| D-alanine-D-alanine ligase A [Escherichia coli KTE224]
gi|431054655|gb|ELD64224.1| D-alanine-D-alanine ligase A [Escherichia coli KTE230]
gi|431103054|gb|ELE07724.1| D-alanine-D-alanine ligase A [Escherichia coli KTE53]
gi|431110715|gb|ELE14632.1| D-alanine-D-alanine ligase A [Escherichia coli KTE55]
gi|431119507|gb|ELE22506.1| D-alanine-D-alanine ligase A [Escherichia coli KTE57]
gi|431123961|gb|ELE26615.1| D-alanine-D-alanine ligase A [Escherichia coli KTE58]
gi|431132945|gb|ELE34943.1| D-alanine-D-alanine ligase A [Escherichia coli KTE60]
gi|431133934|gb|ELE35900.1| D-alanine-D-alanine ligase A [Escherichia coli KTE62]
gi|431140489|gb|ELE42255.1| D-alanine-D-alanine ligase A [Escherichia coli KTE67]
gi|431151429|gb|ELE52444.1| D-alanine-D-alanine ligase A [Escherichia coli KTE72]
gi|431184298|gb|ELE84056.1| D-alanine-D-alanine ligase A [Escherichia coli KTE86]
gi|431193281|gb|ELE92617.1| D-alanine-D-alanine ligase A [Escherichia coli KTE87]
gi|431195577|gb|ELE94546.1| D-alanine-D-alanine ligase A [Escherichia coli KTE93]
gi|431246893|gb|ELF41136.1| D-alanine-D-alanine ligase A [Escherichia coli KTE169]
gi|431259618|gb|ELF51981.1| D-alanine-D-alanine ligase A [Escherichia coli KTE8]
gi|431278508|gb|ELF69498.1| D-alanine-D-alanine ligase A [Escherichia coli KTE45]
gi|431295773|gb|ELF85505.1| D-alanine-D-alanine ligase A [Escherichia coli KTE43]
gi|431305560|gb|ELF93881.1| D-alanine-D-alanine ligase A [Escherichia coli KTE22]
gi|431311950|gb|ELG00098.1| D-alanine-D-alanine ligase A [Escherichia coli KTE46]
gi|431330808|gb|ELG18072.1| D-alanine-D-alanine ligase A [Escherichia coli KTE59]
gi|431332002|gb|ELG19245.1| D-alanine-D-alanine ligase A [Escherichia coli KTE63]
gi|431341961|gb|ELG28957.1| D-alanine-D-alanine ligase A [Escherichia coli KTE65]
gi|431351252|gb|ELG38042.1| D-alanine-D-alanine ligase A [Escherichia coli KTE84]
gi|431370703|gb|ELG56496.1| D-alanine-D-alanine ligase A [Escherichia coli KTE118]
gi|431375214|gb|ELG60558.1| D-alanine-D-alanine ligase A [Escherichia coli KTE123]
gi|431429977|gb|ELH11811.1| D-alanine-D-alanine ligase A [Escherichia coli KTE192]
gi|431437360|gb|ELH18870.1| D-alanine-D-alanine ligase A [Escherichia coli KTE194]
gi|431454723|gb|ELH35081.1| D-alanine-D-alanine ligase A [Escherichia coli KTE183]
gi|431482208|gb|ELH61911.1| D-alanine-D-alanine ligase A [Escherichia coli KTE209]
gi|431485696|gb|ELH65353.1| D-alanine-D-alanine ligase A [Escherichia coli KTE207]
gi|431506211|gb|ELH84809.1| D-alanine-D-alanine ligase A [Escherichia coli KTE215]
gi|431509511|gb|ELH87760.1| D-alanine-D-alanine ligase A [Escherichia coli KTE218]
gi|431514165|gb|ELH92007.1| D-alanine-D-alanine ligase A [Escherichia coli KTE223]
gi|431517229|gb|ELH94751.1| D-alanine-D-alanine ligase A [Escherichia coli KTE227]
gi|431519328|gb|ELH96780.1| D-alanine-D-alanine ligase A [Escherichia coli KTE229]
gi|431535891|gb|ELI12226.1| D-alanine-D-alanine ligase A [Escherichia coli KTE104]
gi|431541014|gb|ELI16464.1| D-alanine-D-alanine ligase A [Escherichia coli KTE106]
gi|431545932|gb|ELI20575.1| D-alanine-D-alanine ligase A [Escherichia coli KTE109]
gi|431555494|gb|ELI29334.1| D-alanine-D-alanine ligase A [Escherichia coli KTE113]
gi|431574163|gb|ELI46945.1| D-alanine-D-alanine ligase A [Escherichia coli KTE124]
gi|431593615|gb|ELI63907.1| D-alanine-D-alanine ligase A [Escherichia coli KTE129]
gi|431601157|gb|ELI70674.1| D-alanine-D-alanine ligase A [Escherichia coli KTE131]
gi|431605974|gb|ELI75358.1| D-alanine-D-alanine ligase A [Escherichia coli KTE133]
gi|431610148|gb|ELI79449.1| D-alanine-D-alanine ligase A [Escherichia coli KTE137]
gi|431622796|gb|ELI91481.1| D-alanine-D-alanine ligase A [Escherichia coli KTE145]
gi|431636833|gb|ELJ04952.1| D-alanine-D-alanine ligase A [Escherichia coli KTE153]
gi|431649278|gb|ELJ16636.1| D-alanine-D-alanine ligase A [Escherichia coli KTE157]
gi|431650053|gb|ELJ17390.1| D-alanine-D-alanine ligase A [Escherichia coli KTE160]
gi|431664980|gb|ELJ31707.1| D-alanine-D-alanine ligase A [Escherichia coli KTE167]
gi|431666632|gb|ELJ33259.1| D-alanine-D-alanine ligase A [Escherichia coli KTE168]
gi|431676732|gb|ELJ42815.1| D-alanine-D-alanine ligase A [Escherichia coli KTE174]
gi|431678582|gb|ELJ44578.1| D-alanine-D-alanine ligase A [Escherichia coli KTE176]
gi|431692234|gb|ELJ57672.1| D-alanine-D-alanine ligase A [Escherichia coli KTE179]
gi|431694126|gb|ELJ59511.1| D-alanine-D-alanine ligase A [Escherichia coli KTE180]
gi|431709733|gb|ELJ74181.1| D-alanine-D-alanine ligase A [Escherichia coli KTE88]
gi|431711808|gb|ELJ76115.1| D-alanine-D-alanine ligase A [Escherichia coli KTE85]
gi|431725738|gb|ELJ89577.1| D-alanine-D-alanine ligase A [Escherichia coli KTE94]
gi|431735967|gb|ELJ99309.1| D-alanine-D-alanine ligase A [Escherichia coli KTE99]
gi|432347069|gb|ELL41533.1| D-alanyl-alanine synthetase A [Escherichia coli J96]
gi|441711952|emb|CCQ07417.1| D-alanine--D-alanine ligase A [Escherichia coli Nissle 1917]
Length = 364
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 164/397 (41%), Gaps = 63/397 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + A + E D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVTSE-EQYTIAVDLAFE-FDHKVIVEQGIK-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL D C +VL + Y KY+ P
Sbjct: 231 CAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPAA 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR A +Q LG AR+D + P + V + T G FT+I
Sbjct: 274 IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNI 325
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ + Q S G +++++ +I A R
Sbjct: 326 SMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E T+ V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYTIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|418963279|ref|ZP_13515118.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
anginosus subsp. whileyi CCUG 39159]
gi|383343394|gb|EID21578.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
anginosus subsp. whileyi CCUG 39159]
Length = 348
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 167/384 (43%), Gaps = 51/384 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S+ PAD
Sbjct: 5 QIILLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQ---AGDFIKTQEFSSKPAD 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 62 NE-KLMTNDSIVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G ++E ++ N + V KP
Sbjct: 121 SSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEK-------IAAVEANLTYPVFTKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L+ A + + D RV++E A ++VG
Sbjct: 174 SNMGSSVGISKSENQ-DELRSALELAFK-YDSRVLIE------QGVNAREIEVG------ 219
Query: 317 PVVLLPTE-VELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
LL E V+ G +V + A ++Y KY+ ++ P + VI ++R+ A
Sbjct: 220 ---LLENEGVKSSLPG--EVVKDVAFYDYEAKYI-DNKITMDIPAKLSEDVIATMRQYAE 273
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F +G AR D ++ T+ G I ++N + G Q S
Sbjct: 274 KAFHAIGGVGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMYPL 316
Query: 436 QASKVGFSHSNILRTIIGHACSRF 459
+G S+++++ ++ A F
Sbjct: 317 LWENMGISYTDLIEKLVLLAQETF 340
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 112/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMDKITTKRV---LASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I + LT + KP+ G S G+++ ++L
Sbjct: 141 PQVPYVAVIEGENIDEKIAAVEANLTY-----PVFTKPSNMGSSVGISKSENQDELR--- 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
ALE L F K R++ +
Sbjct: 193 SALE---------------------------LAF-----------------KYDSRVLIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++ G SL P VK+ E K+ I + P +S +
Sbjct: 209 QGVNAREIEVGLLENEGVKSSL-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E +A+ G +R D F D GE+ + E+NT+PG T
Sbjct: 264 VIATMRQYAEKAFHAIGGVGLARCD-FFYTDKGEIFLNELNTMPGFT 309
>gi|347520819|ref|YP_004778390.1| D-alanine-D-alanine ligase [Lactococcus garvieae ATCC 49156]
gi|385832182|ref|YP_005869957.1| D-alanine--D-alanine ligase [Lactococcus garvieae Lg2]
gi|343179387|dbj|BAK57726.1| D-alanine-D-alanine ligase [Lactococcus garvieae ATCC 49156]
gi|343181335|dbj|BAK59673.1| D-alanine-D-alanine ligase [Lactococcus garvieae Lg2]
Length = 349
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 50/381 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ Y+I + A Q ++ TPA+ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFRVKTYFISQ---AGDFIKTQEFTETPAENEK 64
Query: 142 KLESLAQGFGSLSEFAEHLAANVD-IVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
+ + Q S + A D +VFP +HG GEDG IQ LE + +VG +
Sbjct: 65 LMTN--QTVNSEQKVAPSDIYEKDAVVFPVLHGPMGEDGSIQGFLEIMRLAYVGPNILSA 122
Query: 201 RQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
DK A + G VP E E + V +KL + V VKP G
Sbjct: 123 SSTMDKLLAKHVFTAVGVPQVPYVAAYADENQEKIHAE--VQDKL---TFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
SS+G++ + SL++ + + E D+RVV+E + E VL G+G
Sbjct: 178 SSVGIS----KVSSLEELEAGLAEAYKYDNRVVIEQGV-NAREIECAVL--GNGGKVRST 230
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
LP EV V++ D ++YR KY+ ++ P P V +R A +
Sbjct: 231 --LPGEV---------VKDVD-FYDYRSKYI-DNKIEMAIPADIPAEVAEKMRHYAEKAY 277
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
Q + +R D ++ + G I +IN I G Q S
Sbjct: 278 QAMNGAGLSRCDFFY-----------------DQKGDIYLNEINAIPGFTQWSMYPLLWE 320
Query: 439 KVGFSHSNILRTIIGHACSRF 459
+G S+S ++ ++ A F
Sbjct: 321 NMGLSYSELIEELVSLAQEAF 341
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 122/308 (39%), Gaps = 64/308 (20%)
Query: 616 DELPMRHSINEWIKLAK----ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
++L ++N K+A E A VF +HG +GEDG++Q LE + Y GP ++++
Sbjct: 63 EKLMTNQTVNSEQKVAPSDIYEKDAVVFPVLHGPMGEDGSIQGFLEIMRLAYVGPNILSA 122
Query: 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
+ MDK+ LA + +GV + ++ + I E+ KL VKPA
Sbjct: 123 SSTMDKL---LAKHVFTAVGVPQVPYVAAYADENQEK----IHAEVQDKLTFPVF-VKPA 174
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S G++++ E+L G+ E
Sbjct: 175 NMGSSVGISKVSSLEELEA---------------------GLAE---------------- 197
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
K +R++ + EI V+G G + S +P VK+ D
Sbjct: 198 ----------AYKYDNRVVIEQGVNAREIECAVLGNGGKVRSTLPGEVVKDV-DFYDYRS 246
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ I + P + + E +K + E A+ G SR D F + G++ + E
Sbjct: 247 KYIDNK-IEMAIP--ADIPAEVAEKMRHYAEKAYQAMNGAGLSRCDFFYD-QKGDIYLNE 302
Query: 912 VNTVPGMT 919
+N +PG T
Sbjct: 303 INAIPGFT 310
>gi|283784195|ref|YP_003364060.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168]
gi|282947649|emb|CBG87204.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168]
Length = 364
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 156/396 (39%), Gaps = 61/396 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG++ GG SAE +SL SA++++D I V ID+ + +A N
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHVSDAANYLLNADD 63
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQEVLEKY 188
L A + EH + VD++FP +HG GEDG +Q +L
Sbjct: 64 PAHIALRPSATRLAQVPGQHEHQLIDARTATPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
N+PFVG+ GS AC DK + G P L S N S + +L
Sbjct: 124 NLPFVGSDVLGSAAC---MDKDVTKRLLRDTGLNIAPFVTL--SRANRHTFSFADIKARL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTA 304
+ VKP GSS+GV+ V + + A+ + L D +VVVE + G E
Sbjct: 179 ---GLPLFVKPANQGSSVGVS---KVTNEAQYAQAVALAFEFDHKVVVEQGIV-GREIEC 231
Query: 305 IVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL D C +VL + Y KY+ P
Sbjct: 232 AVLGNDRPQASTCGEIVL-----------------NSDFYAYDTKYIDDNGAKVVVPATI 274
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
+ + IR+ A +Q LG AR+D VF ++E + ++ +IN
Sbjct: 275 DPQINDKIRDIAIQAYQTLGCAGMARVD---------VFLTAENE--------VVINEIN 317
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + G S+++++ +I A R
Sbjct: 318 TLPGFTNISMYPKLWQASGLSYTDLISRLIELALER 353
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 26/114 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK + K
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLGSAACMDK----------------DVTK 145
Query: 698 DVRRKEDLLKTPIVDI---------WHELTSKLQCKTLCVKPARDGCSTGVARL 742
+ R L P V + + ++ ++L L VKPA G S GV+++
Sbjct: 146 RLLRDTGLNIAPFVTLSRANRHTFSFADIKARLGLP-LFVKPANQGSSVGVSKV 198
>gi|395237251|ref|ZP_10415338.1| D-alanyl-alanine synthetase A [Turicella otitidis ATCC 51513]
gi|423350874|ref|ZP_17328526.1| D-alanine-D-alanine ligase [Turicella otitidis ATCC 51513]
gi|394487484|emb|CCI83426.1| D-alanyl-alanine synthetase A [Turicella otitidis ATCC 51513]
gi|404387175|gb|EJZ82300.1| D-alanine-D-alanine ligase [Turicella otitidis ATCC 51513]
Length = 364
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 165/398 (41%), Gaps = 57/398 (14%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAY 124
G + + V ++ GG S E IS SA +V+D++ + V I R N
Sbjct: 5 GTKKITVAVVYGGRSGEHSISCLSAGAVMDNLDRERFEVVPVGITRHGDWVPGTTNREEL 64
Query: 125 AISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEV 184
+I + P + L G+ + A D++FP +HGRFGEDG IQ +
Sbjct: 65 SIVEGRFPEVAPGE-RLSLSLSPTEAGTFRLPGGEVWAKADVIFPVLHGRFGEDGAIQGL 123
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE-VNESELSNWFVTN 243
E VP+VGTG + DK + G P +L+ E +++++ +
Sbjct: 124 FELSGVPYVGTGVLSAACGMDKEFTKKIATAAGVPATPEAVLRAGEGLSDADRERLGL-- 181
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVID---SLKKAKGIILEGIDDRVVVELFLEGGS 300
V VKP GSSIG++ D +L++A+ D +V+VE +E G+
Sbjct: 182 -------PVFVKPASGGSSIGISRVERWEDLPAALEEAR-----ASDPKVIVEAAVE-GA 228
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL+ HP L V + G+ + E + + KY+ V+ P
Sbjct: 229 EVELGVLE-------HPDGRLEASVPARLLGTGESEE--GFYGFEAKYV-DDVVSAEVPA 278
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+P V+ ++ A F+ LG AR+D +FL TE G LF +
Sbjct: 279 DYPAPVVQDLQRLALQTFEALGCEGLARVD-FFL----------------TEEGP-LFNE 320
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G + S + G + +L T++ A R
Sbjct: 321 INTMPGFTEISMYPKVFEASGTPYRELLATLVETALRR 358
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG +Q L E GVPY G GV+++ MDK T GV +
Sbjct: 106 IFPVLHGRFGEDGAIQGLFELSGVPYVGTGVLSAACGMDKEFTKKIATA---AGVPATPE 162
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V R + L D E +L VKPA G S G++R+ EDL ALEE
Sbjct: 163 AVLRAGEGLS----DADRE---RLGLPVF-VKPASGGSSIGISRVERWEDLPA---ALEE 211
Query: 758 C 758
Sbjct: 212 A 212
>gi|206580748|ref|YP_002240164.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae 342]
gi|206569806|gb|ACI11582.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342]
Length = 365
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 161/370 (43%), Gaps = 44/370 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y +
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQ-GLWHINDAGNYLLNAQ 62
Query: 135 TPADFDFKLES--LAQGFGSLSE------FAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + + LAQ G ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALRPSTVTLAQIPGREAQQLINADSGQPLAA-IDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK + G P L + N ++ S V
Sbjct: 122 MANLPFVGSDVLGSAAC---MDKDVTKRLLRDAGLAVAPFITL--TRANRAQFSFADVEA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + +A + E D +VVVE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVKNE-EQYHQAVALAFE-FDHKVVVEQGIK-GREIE 230
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + + Y KY+ Q P
Sbjct: 231 CAVL----GND-HPQASTCGEIVLNSE----------FYAYDTKYIDDQGAQVVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + + V + T G T ++ +
Sbjct: 276 PEINDKIRAIAVQAYQTLGCSGMARVDVFLTADNEVVINEINTLPGFTNIS--MYPKLWQ 333
Query: 424 ISGMEQTSFL 433
SG++ TS +
Sbjct: 334 ASGLDYTSLI 343
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L LA +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + ++ +KL L VKPA G S GV+++ E Y +A
Sbjct: 161 LTRANRAQFS---------FADVEAKLGLP-LFVKPANQGSSVGVSKVKNEEQ---YHQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDHPQASTCGEIVL--NSEFYAYDTKYIDDQGAQVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCSGMARVDVFLTADN-EVVINEINTLPGFT 323
>gi|400290751|ref|ZP_10792778.1| D-alanyl-alanine synthetase A [Streptococcus ratti FA-1 = DSM
20564]
gi|399921542|gb|EJN94359.1| D-alanyl-alanine synthetase A [Streptococcus ratti FA-1 = DSM
20564]
Length = 348
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 172/394 (43%), Gaps = 65/394 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + + Q +SN P D +
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAVNYDKFLVKTYFITQEGD---FIKTQEFSNRPLDSEK 64
Query: 142 KLES----LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ + L+Q S+ E A +VFP +HG GEDG +Q LE +P+VGT
Sbjct: 65 LMTNETLVLSQKIKP-SDIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNI 119
Query: 198 RACRQAFDKYDA-----SLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
A DK S+ + + ++T ++G +V E++L+ KL + V
Sbjct: 120 LTSSVAMDKITTKQVLESISIPQVAYVT----FIEGEDV-EAKLAE--AEAKL---TYPV 169
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
VKP GSS+G++ A + L+ A + L+ D R+++ E G + I + +
Sbjct: 170 FVKPANMGSSVGISKASHQAE-LRAAIELALK-YDSRILI----EQGVDAREIEVGILGN 223
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
D H LP EV KD A ++Y KY+ ++ P +R
Sbjct: 224 KDVHTT--LPGEV-----------VKDVAFYDYEAKYI-DNKITMAIPAAVDDSTAAKMR 269
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A+ F+ LG C +R D +FL T G + ++N + G Q S
Sbjct: 270 SYAAAAFRTLGGCGLSRCD-FFL----------------TAEGDVFLNELNTMPGFTQWS 312
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G ++ ++ T++ A F S+
Sbjct: 313 MYPLLWENMGLTYPELIETLVQLAKEMFAKRESH 346
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 110/291 (37%), Gaps = 69/291 (23%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G ++ S MDK+ T L ++ V
Sbjct: 84 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNILTSSVAMDKITTKQVLESISIPQV 143
Query: 693 LTIN----KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ +DV K E +KL VKPA G S G+++ +L
Sbjct: 144 AYVTFIEGEDVEAK-----------LAEAEAKLTYPVF-VKPANMGSSVGISKASHQAEL 191
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
A+E L K R
Sbjct: 192 RA---AIELAL--------------------------------------------KYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G +H+ +P VK+ E K+ I + P A
Sbjct: 205 ILIEQGVDAREIEVGILGN-KDVHTTLPGEVVKDVA-FYDYEAKYIDNK-ITMAIPAAVD 261
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
ST A K + L G SR D F+ + G+V + E+NT+PG T
Sbjct: 262 DSTAA--KMRSYAAAAFRTLGGCGLSRCDFFLTAE-GDVFLNELNTMPGFT 309
>gi|421490511|ref|ZP_15937883.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
anginosus SK1138]
gi|400373001|gb|EJP25936.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
anginosus SK1138]
Length = 348
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 165/384 (42%), Gaps = 51/384 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S+ P D
Sbjct: 5 QIILLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQ---AGDFIKTQGFSSKPTD 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 62 -DEKLMTNDSIVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G ++E ++ N + V KP
Sbjct: 121 SSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEK-------IAAVEANLTYPVFTKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L+ A + + D RV++E A ++VG +
Sbjct: 174 SNMGSSVGISKSENQ-DELRSALELAFK-YDSRVLIE------QGVNAREIEVGLLGNKG 225
Query: 317 PVVLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
LP EV KD A ++Y KY+ ++ P + VI ++R+ A
Sbjct: 226 AKSSLPGEV-----------VKDVAFYDYEAKYI-DNKITMDIPAKLSEDVIATMRQYAE 273
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F +G +R D ++ T+ G IL ++N + G Q S
Sbjct: 274 KAFHAIGGVGLSRCDFFY-----------------TDKGEILLNELNTMPGFTQWSMYPL 316
Query: 436 QASKVGFSHSNILRTIIGHACSRF 459
+G S+++++ ++ A F
Sbjct: 317 LWENMGISYTDLIEKLVLLAQETF 340
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 115/287 (40%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMDKITTKRV---LASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I + LT + KP+ G S G+++ ++L
Sbjct: 141 PQVPYVAVIEGENIDEKIAAVEANLTY-----PVFTKPSNMGSSVGISKSENQDELR--- 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
ALE L F K R++ +
Sbjct: 193 SALE---------------------------LAF-----------------KYDSRVLIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G G+ SL P VK+ E K+ I + P +S +
Sbjct: 209 QGVNAREIEVGLLGNKGAKSSL-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E +A+ G SR D F D GE+L+ E+NT+PG T
Sbjct: 264 VIATMRQYAEKAFHAIGGVGLSRCD-FFYTDKGEILLNELNTMPGFT 309
>gi|377573025|ref|ZP_09802101.1| D-alanine--D-alanine ligase [Mobilicoccus pelagius NBRC 104925]
gi|377538299|dbj|GAB47266.1| D-alanine--D-alanine ligase [Mobilicoccus pelagius NBRC 104925]
Length = 371
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 161/403 (39%), Gaps = 68/403 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---------LNAYAISSA 129
RV L+ GG S+E +S +A V+ I D V I R+ L A A++
Sbjct: 9 RVALVYGGRSSEHAVSCATAAGVMSAIDTDRFDVVPIGIARDGRWVLGGADLTALALAPG 68
Query: 130 QVYSNTPADFDFKLESL-----------AQGFGSLSEFAEHLAANVDIVFPTIHGRFGED 178
T + D +L AQG +L +VD+VFP +HG FGED
Sbjct: 69 HTPEVT-GEGDLRLPLATDNRTVVDVRGAQGATALG--------DVDVVFPLLHGPFGED 119
Query: 179 GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238
G +Q +LE ++P+VG G A DK+ + G P + + +
Sbjct: 120 GTLQGMLELADIPYVGCGVLASATMMDKHAMKGVFASHGLPIGPFVTITDRQWCTDPQAA 179
Query: 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELF 295
L + + VKP RAGSS+G+T + + +++ A+ D +VVVE
Sbjct: 180 IDAACAL---TFPLFVKPARAGSSVGITRVHSREELPAAVEAAR-----AHDPKVVVEQG 231
Query: 296 LEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA 355
+ G E VL G G D LL G + V + +++ KYL + V
Sbjct: 232 IV-GREIECGVLQ-GRGHDAPRTSLL---------GEIVVDSEHGFYDFDAKYLDEKDVV 280
Query: 356 YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGT 415
P P + IR A+ F+ G AR+D ++ P G
Sbjct: 281 LSCPAELPQGDADRIRTMAAEAFEAAGCEGLARVDFFYTPE-----------------GD 323
Query: 416 ILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ +IN + G S Q G ++ +++ +I A +R
Sbjct: 324 VVVNEINTMPGFTPHSMYPQMWLASGMTYRDLITELIDLALTR 366
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 127/315 (40%), Gaps = 57/315 (18%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-SLALNHLADLGVLTIN 696
VF +HG GEDGTLQ +LE +PY G GV+AS T MDK A + +H +G
Sbjct: 108 VFPLLHGPFGEDGTLQGMLELADIPYVGCGVLASATMMDKHAMKGVFASHGLPIGPFVTI 167
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
D + D +D LT L VKPAR G S G+ R+ E+L V+A
Sbjct: 168 TDRQWCTD--PQAAIDAACALTFP-----LFVKPARAGSSVGITRVHSREELPAAVEA-- 218
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+RAH P++++ + V + Q +A R
Sbjct: 219 -----------ARAHD--------PKVVVEQGIVGREIECGVLQGRGHDAPRT------- 252
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
SL+ + V + K+ + L+ PA + +A D+
Sbjct: 253 ----------------SLLGEIVVDSEHGFYDFDAKYLDEKDVVLS-CPAELPQGDA-DR 294
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 936
+ A EG +R+D F G+V++ E+NT+PG TP ++ L+ M
Sbjct: 295 IRTMAAEAFEAAGCEGLARVD-FFYTPEGDVVVNEINTMPGFTPHSMYPQMWLASG--MT 351
Query: 937 PHQFFRKVLDLGSER 951
+++DL R
Sbjct: 352 YRDLITELIDLALTR 366
>gi|432552390|ref|ZP_19789122.1| D-alanine-D-alanine ligase A [Escherichia coli KTE47]
gi|431087022|gb|ELD93027.1| D-alanine-D-alanine ligase A [Escherichia coli KTE47]
Length = 364
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 164/397 (41%), Gaps = 63/397 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFSEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + A + E D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVTSE-EQYTIAVDLAFE-FDHKVIVEQGIK-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL D C +VL + Y KY+ P
Sbjct: 231 CAVLGNDNPQASTCGEIVL-----------------TSDFYAYDTKYIDEDGAKVVVPAA 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR A +Q LG AR+D + P + V + T G FT+I
Sbjct: 274 IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNI 325
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ + Q S G +++++ +I A R
Sbjct: 326 SMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E T+ V
Sbjct: 161 LTRANRHNIS---------FSEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYTIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|376261307|ref|YP_005148027.1| D-alanine--D-alanine ligase [Clostridium sp. BNL1100]
gi|373945301|gb|AEY66222.1| D-alanine--D-alanine ligase [Clostridium sp. BNL1100]
Length = 349
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 168/395 (42%), Gaps = 67/395 (16%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGD--DLLVRCYYIDRNLNAYAISSAQVYSNT-- 135
+ +I GG S E +SLNS SV++H+ D + ++ + Y ++ +NT
Sbjct: 6 IAIIFGGCSPEYEVSLNSVSSVIEHVNNDLYNTILIGITKEGEWLRYFGDVDKIRNNTWF 65
Query: 136 ------PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
P F + S+ GF SE + + VD FP +HGR GEDG +Q +L+
Sbjct: 66 QEKGCNPVAFS-QSRSI-HGFYEFSEGSSSITF-VDAAFPILHGRNGEDGTVQGMLKLAG 122
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL---D 246
+PFVG G + DK D + +++ I VP ++ S N + + L +
Sbjct: 123 IPFVGCGILSSAMCMDK-DIAHRIAQSSGIRVP--------ISISADKNMILKDILIMAE 173
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTA 304
V VKP RAGSS G+T A +S + + I+ D ++VVE ++G
Sbjct: 174 TLRYPVFVKPARAGSSFGITRA----NSRSELEKAIINAFEYDSKIVVEENIDG------ 223
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY-LPTQQVAYHTPPRFP 363
+VG + +++ E++ Q F+Y KY L T ++ H P R
Sbjct: 224 --FEVGCAILGNDDLIIGEVDEIELQ--------TGFFDYNEKYTLKTSKI--HMPARID 271
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V ++ A +L+ L FAR+D + P G I+F ++N
Sbjct: 272 KVTSERVKNTARILYNALYCTGFARVDMFLTPK-----------------GEIVFNEVNT 314
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I G S G S ++I+ +I A +
Sbjct: 315 IPGFTAHSRYPNMLRGAGLSFASIVDRLIRMAMEK 349
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 49/183 (26%)
Query: 590 HLRNQVVNDLVEGLKKHS-WFTGFDIADEL----------------PMRHSINEWIKLAK 632
H+ N + N ++ G+ K W F D++ SI+ + + ++
Sbjct: 30 HVNNDLYNTILIGITKEGEWLRYFGDVDKIRNNTWFQEKGCNPVAFSQSRSIHGFYEFSE 89
Query: 633 ENQATVFI-----AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLA--- 683
+ + F+ +HG GEDGT+Q +L+ G+P+ G G+++S CMDK +A +A
Sbjct: 90 GSSSITFVDAAFPILHGRNGEDGTVQGMLKLAGIPFVGCGILSSAMCMDKDIAHRIAQSS 149
Query: 684 -----LNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 738
++ AD ++ KD+ + L+ P+ VKPAR G S G
Sbjct: 150 GIRVPISISADKNMIL--KDILIMAETLRYPVF----------------VKPARAGSSFG 191
Query: 739 VAR 741
+ R
Sbjct: 192 ITR 194
Score = 39.7 bits (91), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
++ K ++ NAL GF+R+D F+ GE++ EVNT+PG T
Sbjct: 276 ERVKNTARILYNALYCTGFARVDMFL-TPKGEIVFNEVNTIPGFT 319
>gi|260596746|ref|YP_003209317.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032]
gi|260215923|emb|CBA28502.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032]
Length = 366
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 156/372 (41%), Gaps = 47/372 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQ-GQWHVNDASRYLLNAE 62
Query: 135 TPADFDF----KLESLAQGFGSLSEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA K +L G S + E +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALHRSEKNVALIPGL-SQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+G + DK A + G P L + N ++ V +L
Sbjct: 122 MANIPFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRANRQRITFAEVKAQL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V D + + L D +VVVE ++G
Sbjct: 179 --GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIKGRE----- 228
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
+C VL E + G + V + ++Y KY+ Q P
Sbjct: 229 -------IEC--AVLGNEEPQASTCGEIVVSSE--FYSYDTKYIDDQAARVVVPADIAPD 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 278 VNEKIRAIAVRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISMYP 329
Query: 426 GMEQTSFL-FQQ 436
+ Q S + +QQ
Sbjct: 330 KLWQASGMGYQQ 341
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 18/111 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R++ + E+ ++L L VKPA G S GV+++
Sbjct: 158 FITLTRANRQR---------ITFAEVKAQLGL-PLFVKPANQGSSVGVSKV 198
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVL 945
AL+ G +R+D F+ DN EV+I E+NT+PG T + ++ L + M Q +++
Sbjct: 291 QALECAGLARVDVFLTPDN-EVIINEINTLPGFT--NISMYPKLWQASGMGYQQLITRLI 347
Query: 946 DLGSER 951
+L ER
Sbjct: 348 ELALER 353
>gi|432684216|ref|ZP_19919535.1| D-alanine-D-alanine ligase A [Escherichia coli KTE156]
gi|431225187|gb|ELF22392.1| D-alanine-D-alanine ligase A [Escherichia coli KTE156]
Length = 364
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-MRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 110/283 (38%), Gaps = 60/283 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L +
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFI 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+R + + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 160 TLMRANRHNIS------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD--- 209
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
L F E D + Q KG
Sbjct: 210 ---------------------------LAF----EFDHKVIVEQGI---------KGR-- 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI V+G S + + + D + + K+ G + P A ++ E DK
Sbjct: 228 --EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEINDK 281
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 282 IRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|388471558|ref|ZP_10145767.1| D-alanine--D-alanine ligase [Pseudomonas synxantha BG33R]
gi|388008255|gb|EIK69521.1| D-alanine--D-alanine ligase [Pseudomonas synxantha BG33R]
Length = 364
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 109/393 (27%), Positives = 169/393 (43%), Gaps = 55/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
+RVG+I GG SAE +SL SAR+++D + ID+ + + ++ N
Sbjct: 4 VRVGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPILIGIDKAGHWHLNDTSNFLINQEN 63
Query: 136 PADFDFKLES--LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA + LA G S+ + L ++D++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNQSNRELAVVPGKASQQVVETSGQGLLEHIDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK D S + + I V F+ + N + S NKL
Sbjct: 124 DLPFVGSDVLGSAVC---MDK-DISKRLLRDAGIAVTPFITL-TRGNAARTSFEAAANKL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ G + A + L G D++V+VE ++ G E
Sbjct: 179 GV---PMFVKPANQGSSVGVS-KVGNEAEYRAAVELAL-GFDEKVLVESAVQ-GREIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL G D HP+ G ++ + ++Y KY+ Q P
Sbjct: 233 VL----GND-HPIA----------SGCGEIVVSNGFYSYDSKYIDDQAAQVVVPAAISHE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
IR A F+ LG AR+D VF ++E G +L +IN +
Sbjct: 278 ASERIRRLAIEAFEVLGCAGLARVD---------VFLTNE--------GEVLINEINSLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G S+S ++ +I A R
Sbjct: 321 GFTRISMYPKLWQAAGMSYSELVSRLIELALER 353
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 106/466 (22%), Positives = 176/466 (37%), Gaps = 126/466 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRSRFEPILIG--IDKAGHWHLNDT---SNF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A+ QVV +GL +H D
Sbjct: 58 LINQENPALIALNQSNREL------AVVPGKAS------QQVVETSGQGLLEH-----ID 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 725
CMDK I+K + R + TP + + ++ +
Sbjct: 138 CMDK----------------DISKRLLRDAGIAVTPFITLTRGNAARTSFEAAANKLGVP 181
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
+ VKPA G S GV+++ + Y A+E L F
Sbjct: 182 MFVKPANQGSSVGVSKVGNEAE---YRAAVELAL------GFD----------------- 215
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
+++L S + EI V+G + S + V S
Sbjct: 216 -------EKVLVESAVQGR--------------EIECAVLGNDHPIASGCGEIVV--SNG 252
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
S + K+ + P A +S EA ++ ++ L G +R+D F+ + G
Sbjct: 253 FYSYDSKYIDDQAAQVVVPAA--ISHEASERIRRLAIEAFEVLGCAGLARVDVFLT-NEG 309
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
EVLI E+N++PG T + ++ L + M + ++++L ER
Sbjct: 310 EVLINEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIELALER 353
>gi|339327307|ref|YP_004687000.1| D-alanine--D-alanine ligase [Cupriavidus necator N-1]
gi|338167464|gb|AEI78519.1| D-alanine--D-alanine ligase Ddl [Cupriavidus necator N-1]
Length = 327
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 155/380 (40%), Gaps = 84/380 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S + VL +Q R ++A+
Sbjct: 16 KVGVLLGGRSAEREISLMSGKGVLAALQ-----------SRGVDAHG------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD L+ + AE AA D VF +HGR+GEDG +Q +LE+ VP+ G+G
Sbjct: 52 FDPGLQGV----------AELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGVPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK A+ + + P F + ++ + ++ ++VKP R
Sbjct: 102 ASAMAMDK-QATKRLWMTHDLATPRFAMLHADTDFDAVAADLGL--------PLIVKPAR 152
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT A + + +KA +D+ V+ E F++ G+E T ++ G +
Sbjct: 153 EGSSIGLTKVTAADQMRAAFEKAA-----ALDNDVIAETFID-GAELTCPIVGEGDSAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + +A ++Y+ KY T Y P V +R A
Sbjct: 207 LPV--------------IRIVAPEANYDYQNKYF-TDDTQYLCPSGLDPEVEREVRALAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
++ LG +AR D G ++N GM S +
Sbjct: 252 QSYRVLGCRGWARADLMLRAD-----------------GKPFLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSNILRTIIGHA 455
A VG S+ + + ++ A
Sbjct: 295 AARAVGISYEDFVMQVVAAA 314
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+LA VFIA+HG GEDGT+Q LLE GVPYTG GV+AS MDK AT
Sbjct: 61 ELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGVPYTGSGVLASAMAMDKQATKR------ 114
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-----LCVKPARDGCSTGVARLC 743
L + D L TP + H T L VKPAR+G S G+ ++
Sbjct: 115 ----LWMTHD-------LATPRFAMLHADTDFDAVAADLGLPLIVKPAREGSSIGLTKVT 163
Query: 744 CAEDL 748
A+ +
Sbjct: 164 AADQM 168
>gi|423335960|ref|ZP_17313711.1| D-alanine--D-alanine ligase [Lactobacillus reuteri ATCC 53608]
gi|337729163|emb|CCC04286.1| D-alanine--D-alanine ligase [Lactobacillus reuteri ATCC 53608]
Length = 378
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 170/392 (43%), Gaps = 50/392 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSN 134
+ L + L+ GG S+E +S SA ++ D + + V + ++ +Q ++
Sbjct: 3 KKLHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDG 62
Query: 135 TPADFDFKLESLAQGFGSL---SEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVLEK 187
P D + +A+ + + S A +A N +D FP IHG GEDG IQ + +
Sbjct: 63 EPED-----QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKL 117
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N P+VG+ A +FDK +S+ G P ++ + N ++ S + KL
Sbjct: 118 LNKPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVV--TPENRADYSWGRIEEKL-- 173
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
VKP + GSS+G+ + +KA + D +++VE + E +L
Sbjct: 174 -GNLTFVKPAKQGSSVGIHRVTNA-EEYEKALDDAFK-YDYKILVEQGIANPQEIEISIL 230
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
+ HP+ G+V V + D ++Y K++ V + P + P ++
Sbjct: 231 G-----NEHPIA--------SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLV 277
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ I + A ++ LG+ ARID FL S +V E +T G FT+I+L M
Sbjct: 278 DEITDMALKAYKALGMKGMARID--FLVDSNNVPYLGEP---NTLPG---FTNISLYPQM 329
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ S G S+S+++ +I F
Sbjct: 330 WEVS---------GISYSDLIDRLIQLGLQEF 352
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 110/284 (38%), Gaps = 63/284 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG +GEDGT+Q L + PY G + AS DK T ++
Sbjct: 98 FPVIHGNLGEDGTIQGLFKLLNKPYVGSNIAASAMSFDKDLTKKIISQAG---------- 147
Query: 699 VRRKEDLLKTP--IVDI-WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+R ++ TP D W + KL T VKPA+ G S G+ R+ AE+ Y KAL
Sbjct: 148 IRNTPYVVVTPENRADYSWGRIEEKLGNLTF-VKPAKQGSSVGIHRVTNAEE---YEKAL 203
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
++ F + + L+ +G +
Sbjct: 204 DDA--------FKYDYKI-----------------------------------LVEQGIA 220
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI + ++G + S + +V V + E KF +G+ P + +D
Sbjct: 221 NPQEIEISILGNEHPIASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVK--LPQYLVD 278
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ AL ++G +RID V+ +N L E NT+PG T
Sbjct: 279 EITDMALKAYKALGMKGMARIDFLVDSNNVPYL-GEPNTLPGFT 321
>gi|418410856|ref|ZP_12984160.1| D-alanyl-alanine synthetase A [Agrobacterium tumefaciens 5A]
gi|358002856|gb|EHJ95193.1| D-alanyl-alanine synthetase A [Agrobacterium tumefaciens 5A]
Length = 355
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 157/392 (40%), Gaps = 58/392 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNT 135
LR+ ++ GG SAE +S+ SA +V+ ++ ++ R + +S + V +
Sbjct: 8 LRIAVLFGGRSAEHDVSVMSATNVVGALEPSKYEAVPIFVTRE-GEWLLSHFENGVLARP 66
Query: 136 PADFDFKLESLAQGF------GSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ L +G G +S+ A +DI+FP +HG FGEDG +Q + E
Sbjct: 67 ANGTEIALVPGGRGRMIAIDGGRMSD-----AGKIDILFPVLHGIFGEDGSVQGLAEVAR 121
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
VP VG G A DK A + G + + V + + L
Sbjct: 122 VPLVGCGILGSATALDKDIAKQLLRAAGLPVARAVTVHADRVPSFDTLEIALGLPL---- 177
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVL 307
VKP R GSS+GV + ++ + EGI D +++ E F+ G +++
Sbjct: 178 ---FVKPARQGSSVGVR----KVSCNQEFAPALAEGIKHDRKLLAEEFIRGREIECSVLE 230
Query: 308 DVGSG-FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
D G F P ++P E ++Y KY+ A P P V
Sbjct: 231 DAKGGLFVSRPGEIIPAETH-------------GFYSYDAKYIDDDGAALTVPAELPPEV 277
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
IRE A+L F+ LG AR+D +FL TE L ++N I G
Sbjct: 278 ETKIRETAALAFRALGCDGMARVD-FFL----------------TEDMAFLVNEVNTIPG 320
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G S+ ++ ++ H +R
Sbjct: 321 FTDISMYAKAMAASGVSYPEVIDRLVEHGFAR 352
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 121/307 (39%), Gaps = 59/307 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG++Q L E VP G G++ S T +DK +A L G L + +
Sbjct: 99 LFPVLHGIFGEDGSVQGLAEVARVPLVGCGILGSATALDK---DIAKQLLRAAG-LPVAR 154
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V D + P D E+ L L VKPAR G S GV ++ C ++ + AL E
Sbjct: 155 AVTVHAD--RVPSFDTL-EIALGL---PLFVKPARQGSSVGVRKVSCNQE---FAPALAE 205
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ L+ E F+ R
Sbjct: 206 GIKH-------------------DRKLLAEEFI-----------------------RGRE 223
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
+E +V K G S + E+ S + K+ G LT P + + E K
Sbjct: 224 IECSVLEDAKGGLFVSRPGEIIPAETHGFYSYDAKYIDDDGAALTVP--AELPPEVETKI 281
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 937
++ L AL +G +R+D F+ D L+ EVNT+PG T + +A++ YP
Sbjct: 282 RETAALAFRALGCDGMARVDFFLTEDMA-FLVNEVNTIPGFT-DISMYAKAMAASGVSYP 339
Query: 938 HQFFRKV 944
R V
Sbjct: 340 EVIDRLV 346
>gi|347534595|ref|YP_004841265.1| D-alanine--D-alanine ligase [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504651|gb|AEN99333.1| D-alanine--D-alanine ligase [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 380
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 168/394 (42%), Gaps = 53/394 (13%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSN 134
+ L + L+ GG S+E +S SA ++ + + + V + I R+ + S +V+
Sbjct: 4 KKLHLALLFGGDSSEHDVSKRSAHNIYEAVDKNKYDVSLFLITRDGIILSNEDSLRVFDG 63
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHL--AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPF 192
+ E +L N+D+ FP IHG GEDG IQ +L P+
Sbjct: 64 EEETEVVNEVVPKMDLSNPLEPIINLNKEKNIDVFFPIIHGNLGEDGTIQGLLRLLQKPY 123
Query: 193 VGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
VG+GS A A+DK D + ++ + +++L E N+ + + ++ +L NS +
Sbjct: 124 VGSGSLASGMAYDK-DITKKILDVVGVRNTNYVLVTPE-NDHDWNYEKISERL--NSKIL 179
Query: 253 VVKPTRAGSSIGV-------TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+KP+R GSSIG+ A G+ D+L+ D +V+VE +EG E
Sbjct: 180 FIKPSRQGSSIGIHKVENQSEYAEGMKDALR---------YDTKVLVEEAIEGPEEVEIS 230
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
+L + P ++ G++ V DA + Y K++ +V + P P
Sbjct: 231 ILGNEN----------PKGSKV---GAIKVPASDAFYTYDNKFVDASKVEFTIPVALPSG 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V + I + A F+ L L ARID FL S + T +IN +
Sbjct: 278 VADEITDMAIKAFKALELKGMARID--FLVSKDY---------------TPYLGEINTLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G S Q G S++ ++ +I A F
Sbjct: 321 GFTNISLYPQLWEASGISYTELIDKLIELAFEEF 354
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 135/331 (40%), Gaps = 69/331 (20%)
Query: 628 IKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 686
I L KE VF + HG +GEDGT+Q LL PY G G +AS DK T L+
Sbjct: 87 INLNKEKNIDVFFPIIHGNLGEDGTIQGLLRLLQKPYVGSGSLASGMAYDKDITKKILDV 146
Query: 687 LADLGVLTINKDVRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+ VR +L TP D + +++ +L K L +KP+R G S G+ ++
Sbjct: 147 VG----------VRNTNYVLVTPENDHDWNYEKISERLNSKILFIKPSRQGSSIGIHKV- 195
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
N A GM + ++L+ E +E E
Sbjct: 196 --------------------ENQSEYAEGMKDALRYDTKVLV-EEAIEGPE--------- 225
Query: 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 863
E+ + ++G S + ++ V S + + KF + + T
Sbjct: 226 ---------------EVEISILGNENPKGSKVGAIKVPASDAFYTYDNKFVDASKVEFTI 270
Query: 864 PPA--SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921
P A S ++ E D + + AL+L+G +RID V+ D L E+NT+PG T
Sbjct: 271 PVALPSGVADEITDMAIKAFK----ALELKGMARIDFLVSKDYTPYL-GEINTLPGFT-- 323
Query: 922 TVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ ++ L E + + K+++L E F
Sbjct: 324 NISLYPQLWEASGISYTELIDKLIELAFEEF 354
>gi|445495030|ref|ZP_21462074.1| D-alanine-D-alanine ligase Ddl [Janthinobacterium sp. HH01]
gi|444791191|gb|ELX12738.1| D-alanine-D-alanine ligase Ddl [Janthinobacterium sp. HH01]
Length = 323
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 149/376 (39%), Gaps = 77/376 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +S+ S VL +Q +D +L
Sbjct: 14 KVGVLYGGRSAERDVSIMSGNGVLKALQSKG-------VDAHL----------------- 49
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G +L+E A A D VF +HGRFGEDG +Q LE +P+ G+G
Sbjct: 50 FD-------TGVCTLAELA---AEKFDRVFIALHGRFGEDGCLQGALELLGIPYTGSGVM 99
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK + G T +L + V S+L L ++VKP
Sbjct: 100 ASSVGMDKITTKIVWLAAGLPTPRYAVLSAAAVAGSDLDAVAADLGL-----PLIVKPPH 154
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS+IG+T + K A I +DD V+ E F+ G EFT +L GSG + P
Sbjct: 155 EGSTIGIT-KVSAANEFKTAFDIA-AALDDTVLAEEFVT-GREFTVAML--GSGANARP- 208
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
LP V++ ++Y+ KY T Y P P + ++ A L +
Sbjct: 209 --LPV---------VEIVAPQGNYDYQNKYF-TDDTQYFCPAVLPEALTQEMQRLAVLAY 256
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ +G + R+D S F ++N GM S + A
Sbjct: 257 RAIGCEGWGRVDFLLRESDQKPF----------------LLEVNTSPGMTGHSLVPMAAR 300
Query: 439 KVGFSHSN----ILRT 450
G S+ + ILRT
Sbjct: 301 AEGISYEDLCVEILRT 316
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 36/54 (66%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 682
+LA E VFIA+HG GEDG LQ LE G+PYTG GVMAS MDK+ T +
Sbjct: 59 ELAAEKFDRVFIALHGRFGEDGCLQGALELLGIPYTGSGVMASSVGMDKITTKI 112
>gi|433459063|ref|ZP_20416921.1| D-alanyl-alanine synthetase A [Arthrobacter crystallopoietes
BAB-32]
gi|432192342|gb|ELK49230.1| D-alanyl-alanine synthetase A [Arthrobacter crystallopoietes
BAB-32]
Length = 382
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 161/396 (40%), Gaps = 52/396 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYAISSAQVYSN 134
RV ++ GG S+E +S +A VL I D V I RN L A +S + S
Sbjct: 18 RVAVLFGGRSSEHSVSCVTAAGVLAAIDQDKYDVVPVGIARNGQWVLVADDPASWSLTSG 77
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLA----------ANVDIVFPTIHGRFGEDGGIQEV 184
+ E + + FAE L +D+V P +HG FGEDG +Q +
Sbjct: 78 ELPEVQASAEHVM--LAARDSFAELLVQSGPEATRSLGRIDVVLPLLHGPFGEDGTLQGL 135
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
LE +V +VG G A DK+ + S G P ++ + +
Sbjct: 136 LEMADVRYVGAGVLASAVGMDKHFMKVAFSAAGLEVGPYEVITDRDWQREPEAALQRAAA 195
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVID--SLKKAKGIILEGIDDRVVVELFLEGGSEF 302
LD V VKP RAGSS+G+T V D L+ A E D +VVVE + G E
Sbjct: 196 LD---FPVFVKPARAGSSMGITR---VTDPAQLRAAVETAREH-DPKVVVEAGI-AGREI 247
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL G G + P LP E+ +Q + A +++ KY+ A P
Sbjct: 248 EVAVLQ-GRGAE-DPRTSLPGEIAVQ-------PGEHAFYDFEAKYVDGAAAALSCPADL 298
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P +RE A+ F + +R+D ++ P G ++ +IN
Sbjct: 299 PEAATARVRELAAQAFDAVAAEGLSRVDFFYTPQ-----------------GGLVINEIN 341
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S Q +K G ++ ++ +IG A SR
Sbjct: 342 TMPGFTPISMYPQMWAKSGLPYTELIDELIGLALSR 377
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 124/318 (38%), Gaps = 84/318 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD----KVATSLALNHLADLGVL 693
V +HG GEDGTLQ LLE V Y G GV+AS MD KVA S A + V+
Sbjct: 118 VLPLLHGPFGEDGTLQGLLEMADVRYVGAGVLASAVGMDKHFMKVAFSAAGLEVGPYEVI 177
Query: 694 TINKDVRRKED--LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
T ++D +R+ + L + +D + VKPAR G S G+ R+ L
Sbjct: 178 T-DRDWQREPEAALQRAAALDF-----------PVFVKPARAGSSMGITRVTDPAQLRAA 225
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
V+ +R H P++++
Sbjct: 226 VET-------------AREHD--------PKVVV-------------------------- 238
Query: 812 KGNSRWVEITVGVIGKCGSM--HSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPAS 867
+ EI V V+ G+ + +P + G+ E K+ G L+ P +
Sbjct: 239 EAGIAGREIEVAVLQGRGAEDPRTSLPGEIAVQPGEHAFYDFEAKYVDGAAAALSCP--A 296
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
+ A + ++ +A+ EG SR+D F G ++I E+NT+PG TP +
Sbjct: 297 DLPEAATARVRELAAQAFDAVAAEGLSRVD-FFYTPQGGLVINEINTMPGFTPIS----- 350
Query: 928 ALSEQPPMYPHQFFRKVL 945
MYP + + L
Sbjct: 351 -------MYPQMWAKSGL 361
>gi|308177218|ref|YP_003916624.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117]
gi|307744681|emb|CBT75653.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117]
Length = 370
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 161/397 (40%), Gaps = 49/397 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDRNLNAYAI 126
R LRV L+ GG S+E +S +A V+ I + + +D + +A+
Sbjct: 4 RKLRVLLLFGGRSSEHSVSCVTAAGVMHAIDRERFEIVPVGITRDGGWTLLDEDPEGWAL 63
Query: 127 SSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLA--ANVDIVFPTIHGRFGEDGGIQEV 184
++ ++ + D L + AQ LS +A +D+VFP +HG FGEDG IQ +
Sbjct: 64 NTGKLPEISSVDHPVHLSTDAQKTSLLSYSDSAVADLGEIDVVFPLLHGPFGEDGSIQGM 123
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE-VNESELSNWFVTN 243
LE V +VG+G A DK+ + GF P ++ + + +SE + N
Sbjct: 124 LEMAGVSYVGSGIAASAMGMDKHYMKVVFEGAGFNVGPYEVITNKQWLRDSEAAMKRCDN 183
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI-ILEGIDDRVVVELFLEGGSEF 302
P + VKP RAGSS+G+T V D + I I D +V++E + G
Sbjct: 184 LQYP----LFVKPARAGSSVGIT---KVDDPSELRAAIEIARAEDPKVIIEQGIVGREIE 236
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREK-DAIFNYRRKYLPTQQVAYHTPPR 361
++ GSG P+ L G + V + +++ KY+ P
Sbjct: 237 CGVLEGRGSG---------PSRASL--PGEIAVADNLHTFYDFEAKYVDGAAAELSCPAN 285
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
IRE A F + +R+D ++ P G + +I
Sbjct: 286 LSDEATLEIRELAVKAFDAIDAEGLSRVDFFYTPE-----------------GDWIINEI 328
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
N + G +S Q +K G + ++ +I A R
Sbjct: 329 NTMPGFTPSSMYPQMWAKTGIEYRELIDELIALATER 365
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 133/332 (40%), Gaps = 90/332 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 693
VF +HG GEDG++Q +LE GV Y G G+ AS MDK + ++ V+
Sbjct: 106 VFPLLHGPFGEDGSIQGMLEMAGVSYVGSGIAASAMGMDKHYMKVVFEGAGFNVGPYEVI 165
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T + +R E +K LQ L VKPAR G S G+ ++ +L ++
Sbjct: 166 TNKQWLRDSEAAMKR---------CDNLQYP-LFVKPARAGSSVGITKVDDPSELRAAIE 215
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
+RA P+++I + V
Sbjct: 216 -------------IARAED--------PKVIIEQGIVGR--------------------- 233
Query: 814 NSRWVEITVGVI---GKCGSMHSLMPSVTVKES-GDILSLEEKFQGGTGINLTPPPASIM 869
EI GV+ G S SL + V ++ E K+ G L+ P + +
Sbjct: 234 -----EIECGVLEGRGSGPSRASLPGEIAVADNLHTFYDFEAKYVDGAAAELSCP--ANL 286
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 929
S EA + ++ +A+ EG SR+D F G+ +I E+NT+PG TPS+
Sbjct: 287 SDEATLEIRELAVKAFDAIDAEGLSRVD-FFYTPEGDWIINEINTMPGFTPSS------- 338
Query: 930 SEQPPMYPHQF------FRKVLD----LGSER 951
MYP + +R+++D L +ER
Sbjct: 339 -----MYPQMWAKTGIEYRELIDELIALATER 365
>gi|429759002|ref|ZP_19291508.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 181 str.
F0379]
gi|429172374|gb|EKY13942.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 181 str.
F0379]
Length = 316
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 163/387 (42%), Gaps = 83/387 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L+V ++ GG + ER +S+ S R V + + Q ++
Sbjct: 6 LKVLIVAGGLTHERDVSVRSGRRVANSLVN----------------------QGFAAKVV 43
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DFD L S ++S F D+++P +HG GEDG +Q +LE +P+VG+
Sbjct: 44 DFDQNLPS------AISYF------RPDVIWPLVHGSIGEDGSLQTLLEGTGIPYVGSTP 91
Query: 198 RACRQAFDKYDA-----SLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN-SGK 251
A +K A S + G+I +P L + +L V ++ +
Sbjct: 92 AQAMLASNKPTAKALVGSAGLDTPGWIALPQLLFR-------QLGAQNVLKMIEAGLTFP 144
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+VVKP+ GS++G++ AY D L+ A + ++ V++E ++ G + V+D+
Sbjct: 145 LVVKPSSGGSALGMSKAYDAGD-LRSAM-VDAFSYEENVMLERYV-AGRDIAVSVIDLED 201
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
G P+ L P EV D ++Y +Y T + Y P R + ++
Sbjct: 202 G----PLALPPVEVA----------TDDGHYDYEARYT-TDESEYFVPARLSDDEMTDVQ 246
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A + + LGL D +RID + + E G F D N+ GM TS
Sbjct: 247 SAAIQIHELLGLRDLSRID-----------------FIADEDGNFWFIDANVSPGMTDTS 289
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSR 458
LF QA++ S I +I+ + R
Sbjct: 290 -LFPQAAEATGSFDKICASIVEYVAQR 315
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 16/113 (14%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL---GVLTINKD 698
VHG IGEDG+LQ+LLE G+PY G + +K T+ AL A L G + + +
Sbjct: 65 VHGSIGEDGSLQTLLEGTGIPYVGSTPAQAMLASNK-PTAKALVGSAGLDTPGWIALPQL 123
Query: 699 VRRK---EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ R+ +++LK I LT L VKP+ G + G+++ A DL
Sbjct: 124 LFRQLGAQNVLKM----IEAGLTFP-----LVVKPSSGGSALGMSKAYDAGDL 167
>gi|386017253|ref|YP_005935551.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis AJ13355]
gi|386077822|ref|YP_005991347.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis PA13]
gi|327395333|dbj|BAK12755.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis AJ13355]
gi|354987003|gb|AER31127.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis PA13]
Length = 365
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 95/403 (23%), Positives = 162/403 (40%), Gaps = 59/403 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVG++ GG S+E +SL SA++++D I V ID+ + ++ N
Sbjct: 5 RVGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENP 64
Query: 139 FDFKLESLAQGFG---------SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
L A+ + H + +D++FP +HG GEDG +Q +L +
Sbjct: 65 SLIALNRTAKQVALIPGEPQNQIIDRMDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMAS 124
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
+PFVG+ + DK D + + + + V +L V +++++N + +
Sbjct: 125 LPFVGSDVLGSAVSMDK-DVTKRLLRDAGLKVAPWL----SVTQAQMNNLDIEAVIARFG 179
Query: 250 GKVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ +KP GSS+G VT A +L+ A D++V++E ++ G E V
Sbjct: 180 LPLFIKPANQGSSVGVSKVTTAAAFRAALELAF-----RFDNKVLIEKGIK-GREIECAV 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C VV+ DA ++Y KY+ P P
Sbjct: 234 LGNDYPEASPCGEVVV-----------------SDAFYSYDTKYISETGAHTVIPADIPA 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V +IRE A F L AR+D ++ TE G I+ ++N +
Sbjct: 277 AVDEAIREVALTAFTALSCFGLARVDVFY-----------------TEDGEIIVNEVNTL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
G S + G S+ +++ +I A R AS +
Sbjct: 320 PGFTNISMYPKLWQAAGLSYQDLITRLIELALERHQQNASLKT 362
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 109/470 (23%), Positives = 180/470 (38%), Gaps = 130/470 (27%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
+ V ++FGG +SE +VSL S N+ + A + LL ID N D+
Sbjct: 4 QRVGIVFGGKSSEHEVSLQSAKNI---VDAIDKTRFEVVLLG--IDKQGQWHLN----DA 54
Query: 552 SSRVVWSLPYSLV-LRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFT 610
S+ ++ + SL+ L T ++V A I EP +NQ+++ +
Sbjct: 55 SNFLLNAENPSLIALNRTAKQV--ALIPG-EP---------QNQIIDRM----------- 91
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
D P+ +F VHG GEDG+LQ LL +P+ G V+
Sbjct: 92 -----DAHPLSQ------------LDVIFPVVHGTQGEDGSLQGLLRMASLPFVGSDVLG 134
Query: 671 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----- 725
S MDK + K + R L P + + + L +
Sbjct: 135 SAVSMDK----------------DVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARF 178
Query: 726 ---LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782
L +KPA G S GV+++ A + ALE
Sbjct: 179 GLPLFIKPANQGSSVGVSKVTTA---AAFRAALE-------------------------- 209
Query: 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE 842
L F + ++++ + + EI V+G S V V +
Sbjct: 210 -LAF-----------------RFDNKVLIEKGIKGREIECAVLGNDYPEASPCGEVVVSD 251
Query: 843 SGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVN 901
+ S + K+ TG + T PA I + A+D+ + + L A AL G +R+D F
Sbjct: 252 A--FYSYDTKYISETGAH-TVIPADIPA--AVDEAIREVALTAFTALSCFGLARVDVFYT 306
Query: 902 VDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D GE+++ EVNT+PG T + ++ L + + ++++L ER
Sbjct: 307 ED-GEIIVNEVNTLPGFT--NISMYPKLWQAAGLSYQDLITRLIELALER 353
>gi|429109179|ref|ZP_19170949.1| D-alanine--D-alanine ligase [Cronobacter malonaticus 507]
gi|426310336|emb|CCJ97062.1| D-alanine--D-alanine ligase [Cronobacter malonaticus 507]
Length = 366
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 151/367 (41%), Gaps = 48/367 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQ-GQWHVNDASRYLLNAE 62
Query: 135 TPADFDF----KLESLAQGFGS---LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA K +L G + +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALHRSEKNVALIPGLSQQQLIESNNRQALPQLDVIFPIVHGTLGEDGSLQGMLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+G + DK A + G P L + N ++ V +L
Sbjct: 123 ANIPFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRANRQRITFEDVKAQL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ V D + + L D +VVVE ++ G E V
Sbjct: 179 -GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIK-GREIECAV 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C +V V +F ++Y KY+ Q P
Sbjct: 234 LGNDSPQASTCGEIV-----VSSEF------------YSYDTKYIDDQAARVVVPADIAP 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V + IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 277 DVNDKIRAIAIRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISMY 328
Query: 425 SGMEQTS 431
+ Q S
Sbjct: 329 PKLWQAS 335
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 130/320 (40%), Gaps = 72/320 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+T+ + R++ + ++ ++L L VKPA G S GV+++
Sbjct: 158 FITLTRANRQRI---------TFEDVKAQLGL-PLFVKPANQGSSVGVSKV--------- 198
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
N ++ H + + ++ E +
Sbjct: 199 -------------NDEAQYHAAVALAFEFDHKVVVETGI--------------------- 224
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
KG EI V+G S + V S + S + K+ + P + ++
Sbjct: 225 KGR----EIECAVLGNDSPQASTCGEIVV--SSEFYSYDTKYIDDQAARVVVP--ADIAP 276
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
+ DK + AL+ G +R+D F+ DN EV+I E+NT+PG T + ++ L +
Sbjct: 277 DVNDKIRAIAIRAFQALECAGLARVDVFLTPDN-EVIINEINTLPGFT--NISMYPKLWQ 333
Query: 932 QPPMYPHQFFRKVLDLGSER 951
+ + ++++L ER
Sbjct: 334 ASGIGYQELITRLIELALER 353
>gi|425420988|ref|ZP_18802219.1| D-alanine--D-alanine ligase 2 [Escherichia coli 0.1288]
gi|408347850|gb|EKJ61993.1| D-alanine--D-alanine ligase 2 [Escherichia coli 0.1288]
Length = 364
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLLTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D VF +SE + ++ +
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVD---------VFLTSENE--------VVINE 315
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S + G +++++ +I A R
Sbjct: 316 INTLPGFTNISMYPKLWQASGLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTSEN-EVVINEINTLPGFT 323
>gi|227543554|ref|ZP_03973603.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A]
gi|338204054|ref|YP_004650199.1| D-alanine-D-alanine ligase [Lactobacillus reuteri SD2112]
gi|227186481|gb|EEI66552.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A]
gi|336449294|gb|AEI57909.1| D-alanine-D-alanine ligase [Lactobacillus reuteri SD2112]
Length = 378
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 170/392 (43%), Gaps = 50/392 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSN 134
+ L + L+ GG S+E +S SA ++ D + + V + ++ +Q ++
Sbjct: 3 KKLHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDG 62
Query: 135 TPADFDFKLESLAQGFGSL---SEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVLEK 187
P D + +A+ + + S A +A N +D FP IHG GEDG IQ + +
Sbjct: 63 EPED-----QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKL 117
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N P+VG+ A +FDK +S+ G P ++ + N ++ S + KL
Sbjct: 118 LNKPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVV--TPENRADYSWSRIEEKL-- 173
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
VKP + GSS+G+ + +KA + D +++VE + E +L
Sbjct: 174 -GNLTFVKPAKQGSSVGIHRVTNA-EEYEKALDDAFK-YDYKILVEQGIANPQEIEISIL 230
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
+ HP+ G+V V + D ++Y K++ V + P + P ++
Sbjct: 231 G-----NEHPIA--------SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLV 277
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ I + A ++ LG+ ARID FL S +V E +T G FT+I+L M
Sbjct: 278 DEITDMALKAYKALGMKGMARID--FLVDSNNVPYLGEP---NTLPG---FTNISLYPQM 329
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ S G S+S+++ +I F
Sbjct: 330 WEVS---------GISYSDLIDRLIQLGLQEF 352
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 110/284 (38%), Gaps = 63/284 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG +GEDGT+Q L + PY G + AS DK T ++
Sbjct: 98 FPVIHGNLGEDGTIQGLFKLLNKPYVGSNIAASAMSFDKDLTKKIISQAG---------- 147
Query: 699 VRRKEDLLKTP--IVDI-WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+R ++ TP D W + KL T VKPA+ G S G+ R+ AE+ Y KAL
Sbjct: 148 IRNTPYVVVTPENRADYSWSRIEEKLGNLTF-VKPAKQGSSVGIHRVTNAEE---YEKAL 203
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
++ F + + L+ +G +
Sbjct: 204 DDA--------FKYDYKI-----------------------------------LVEQGIA 220
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI + ++G + S + +V V + E KF +G+ P + +D
Sbjct: 221 NPQEIEISILGNEHPIASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVK--LPQYLVD 278
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ AL ++G +RID V+ +N L E NT+PG T
Sbjct: 279 EITDMALKAYKALGMKGMARIDFLVDSNNVPYL-GEPNTLPGFT 321
>gi|335031397|ref|ZP_08524838.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
anginosus SK52 = DSM 20563]
gi|333769801|gb|EGL46891.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
anginosus SK52 = DSM 20563]
Length = 348
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 165/384 (42%), Gaps = 51/384 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S+ PAD
Sbjct: 5 QIILLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQ---AGDFIKTQEFSSKPAD 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 62 NE-KLMTNDSVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G ++E ++ N + V KP
Sbjct: 121 SSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEK-------IAAVEANLTYPVFTKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L+ A + + D RV++E A ++VG +
Sbjct: 174 SNMGSSVGISKSENQ-DELRSALELAFK-YDSRVLIE------QGVNAREIEVGLLGNEG 225
Query: 317 PVVLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
LP EV KD A ++Y KY+ ++ P + VI ++R+ A
Sbjct: 226 AKSSLPGEV-----------VKDVAFYDYEAKYI-DNKITIDIPAKLSEDVIATMRQYAE 273
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F +G AR D ++ T+ G I ++N + G Q S
Sbjct: 274 KAFHAIGGVGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMYPL 316
Query: 436 QASKVGFSHSNILRTIIGHACSRF 459
+G S+++++ ++ A F
Sbjct: 317 LWENMGISYTDLIEKLVLLAQETF 340
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 114/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMDKITTKRV---LASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I + LT + KP+ G S G+++ ++L
Sbjct: 141 PQVPYVAVIEGENIDEKIAAVEANLTY-----PVFTKPSNMGSSVGISKSENQDELR--- 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
ALE L F K R++ +
Sbjct: 193 SALE---------------------------LAF-----------------KYDSRVLIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G G+ SL P VK+ E K+ I + P +S +
Sbjct: 209 QGVNAREIEVGLLGNEGAKSSL-PGEVVKDVA-FYDYEAKYIDNK-ITIDIPAK--LSED 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E +A+ G +R D F D GE+ + E+NT+PG T
Sbjct: 264 VIATMRQYAEKAFHAIGGVGLARCD-FFYTDKGEIFLNELNTMPGFT 309
>gi|326790614|ref|YP_004308435.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
gi|326541378|gb|ADZ83237.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
Length = 350
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 134/295 (45%), Gaps = 54/295 (18%)
Query: 164 VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223
VD+VFP +HG+FGEDG IQ +LE +PFVG + A DK ++K+G S
Sbjct: 97 VDVVFPILHGKFGEDGTIQGLLELSGIPFVGCRTLASAICMDKAITHRLVAKEGIKVARS 156
Query: 224 FLLQGSEVN-ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY---GVIDSLKKAK 279
+L + N E L V KL V +KP ++GSSIG+T + + D++ KA
Sbjct: 157 IVLYKEDRNAEQRLEE--VDIKL-----PVYIKPAKSGSSIGITKVFHFEQLEDAISKA- 208
Query: 280 GIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF--DCHPVVLLPTEVELQFQGSVDVRE 337
LE DD+VV+E + G +VG + +P++ E+EL
Sbjct: 209 --FLE--DDKVVIEENING--------FEVGCAILGNENPMIGEVDEIELM--------- 247
Query: 338 KDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397
F++ KY+ H P R V + I++ A +++ L AR+D +
Sbjct: 248 -GDFFDFNEKYMLANS-KIHMPARVEKEVAHQIKKTAIKIYEILSCTGLARVDMFL---- 301
Query: 398 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
T+ I F ++N + G +S + S +G S+++++ +I
Sbjct: 302 -------------TQGNEIYFNEVNTLPGFTSSSRYPKMMSSIGLSYTDVITRLI 343
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 132/331 (39%), Gaps = 72/331 (21%)
Query: 600 VEGLKKHSWFTGFDIADEL--PMRHSINEWIKLAKENQAT-----VFIAVHGGIGEDGTL 652
VE ++ H+W T + P R I+L+ E VF +HG GEDGT+
Sbjct: 56 VEMIRNHTWLTDKSCVEAFISPSREQ-KGLIELSPEGYKVTEVDVVFPILHGKFGEDGTI 114
Query: 653 QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712
Q LLE G+P+ G +AS CMDK T +A G+ V KED ++
Sbjct: 115 QGLLELSGIPFVGCRTLASAICMDKAITH---RLVAKEGIKVARSIVLYKEDRNAEQRLE 171
Query: 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHG 772
E+ KL + +KPA+ G S G+ ++ E L ++ S+A
Sbjct: 172 ---EVDIKL---PVYIKPAKSGSSIGITKVFHFEQL---------------EDAISKA-- 208
Query: 773 MIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH 832
F+E D+++ N E+ ++G M
Sbjct: 209 ----------------FLEDDKVVIEE--------------NINGFEVGCAILGNENPMI 238
Query: 833 SLMPSVTVKESGDILSLEEKFQ-GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 891
+ + + GD EK+ + I++ PA + E + K+ I L
Sbjct: 239 GEVDEIEL--MGDFFDFNEKYMLANSKIHM---PARV-EKEVAHQIKKTAIKIYEILSCT 292
Query: 892 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
G +R+D F+ N E+ EVNT+PG T S+
Sbjct: 293 GLARVDMFLTQGN-EIYFNEVNTLPGFTSSS 322
>gi|345298054|ref|YP_004827412.1| D-alanine--D-alanine ligase [Enterobacter asburiae LF7a]
gi|345091991|gb|AEN63627.1| D-alanine--D-alanine ligase [Enterobacter asburiae LF7a]
Length = 366
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 170/398 (42%), Gaps = 65/398 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SNT 135
RVG++ GG SAE +SL SA++++D I + V ID+ + I+ A Y ++
Sbjct: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFEVVLLGIDKQ-GQWHINDASQYLLNADD 63
Query: 136 PADFDFKLESLA--------QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA ++ QG + A+ L +D++FP +HG GEDG +Q +L
Sbjct: 64 PAHIALNPSEISVATVPGNVQGQFIDAGNAQALT-QIDVIFPIVHGTLGEDGSLQGMLRM 122
Query: 188 YNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
N+PFVG+ GS AC DK D + + + + + F+ + N + S ++ +
Sbjct: 123 ANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFITL-TRANRDKHSFASISAQ 177
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFT 303
L + VKP GSS+GV+ V + + + L G D +VVVE ++ G E
Sbjct: 178 L---GLPLFVKPANQGSSVGVS---KVNSEAQFDEAVRLAFGFDHKVVVEQGIK-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL D C VVL ++Y KY+ + P
Sbjct: 231 CAVLGNDFPQASTCGEVVL-----------------NSDFYSYDTKYIDDKGAQVVVPAD 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR A +Q LG AR+D + P + V + T G FT+I
Sbjct: 274 IDPAINDKIRAIAVEAYQALGCAGMARVDVFLTPENEVVINEINTLPG--------FTNI 325
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++ + Q S G S+ ++ +I A R+
Sbjct: 326 SMYPKLWQAS---------GISYPELITRLIELALERY 354
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---L 693
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L + +
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFI 159
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
T+ + R K + ++++L L VKPA G S GV+++
Sbjct: 160 TLTRANRDKHS---------FASISAQLGLP-LFVKPANQGSSVGVSKV 198
>gi|389686070|ref|ZP_10177393.1| D-alanine--D-alanine ligase [Pseudomonas chlororaphis O6]
gi|388550412|gb|EIM13682.1| D-alanine--D-alanine ligase [Pseudomonas chlororaphis O6]
Length = 364
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 162/394 (41%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
LRVG+I GG SAE +SL SAR+++D + + ID+N + + ++ N
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSARNIVDALDRERFEPVLIGIDKNGHWHLNDTSNFLINQEN 63
Query: 136 PADFDFKLE----SLAQGFGS---LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA ++ G S L + L +VD++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNQSNRELAVVPGKASQQLLETSNQELLGHVDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK + + G P L + ++ + +KL
Sbjct: 124 DLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFITLNRATAARTDFAQ--AQSKL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTA 304
+ VKP GSS+GV+ V + I L G D++V+VE + G E
Sbjct: 179 GL---PMFVKPANQGSSVGVS---KVTSEAQYHAAIELALGFDEKVLVESAVS-GREIEC 231
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G D P+ G ++ ++Y KY+ Q P
Sbjct: 232 AVL----GND-QPIA----------SGCGEIVVGSGFYSYDSKYIDDQAAQVVVPADLSE 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V IR A FQ LG AR+D + T+ G +L +IN +
Sbjct: 277 EVSERIRALAIEAFQVLGCSGLARVDVFL-----------------TQGGEVLINEINSL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G ++S ++ +I A R
Sbjct: 320 PGFTRISMYPKLWQAAGMTYSELVSRLIELALER 353
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 127/321 (39%), Gaps = 74/321 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG LQ LL +P+ G V+ S CMDK + L LA +T
Sbjct: 101 VIFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAVCMDKDISKRLLRDAGLAVTPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+N+ + D + + SKL + VKPA G S GV+++
Sbjct: 161 LNRATAARTD---------FAQAQSKLGLP-MFVKPANQGSSVGVSKV------------ 198
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
S ++ H IE+ E ++ E V EI + D+ + G
Sbjct: 199 ----------TSEAQYHAAIELALGFDEKVLVESAVSGREI----ECAVLGNDQPIASGC 244
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI VG SG S + K+ + P +
Sbjct: 245 G---EIVVG-------------------SG-FYSYDSKYIDDQAAQVVVP------ADLS 275
Query: 875 DKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
++ +RI +A L G +R+D F+ GEVLI E+N++PG T + ++ L
Sbjct: 276 EEVSERIRALAIEAFQVLGCSGLARVDVFLT-QGGEVLINEINSLPGFT--RISMYPKLW 332
Query: 931 EQPPMYPHQFFRKVLDLGSER 951
+ M + ++++L ER
Sbjct: 333 QAAGMTYSELVSRLIELALER 353
>gi|119717515|ref|YP_924480.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
gi|119538176|gb|ABL82793.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
Length = 373
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 153/379 (40%), Gaps = 47/379 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQ---------------------GDDLLVRC 114
R RV ++ GG S+E IS +A SVL I GD +R
Sbjct: 6 RRPRVAVVFGGKSSEHAISCVTAGSVLAAIDRAAYDVVPIGIATDGRWVLESGDPERLRI 65
Query: 115 YYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGR 174
DR + +A + A + AQ +L E VD+VFP +HG
Sbjct: 66 EGPDRLPHVDGERAAIALAPDTASTSLVVTEPAQPPRALGE--------VDVVFPLLHGP 117
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234
+GEDG IQ +LE V +VG G A + DK + ++ G +PS + E
Sbjct: 118 WGEDGTIQGLLEMAGVRYVGAGVLASAVSMDKAYMKVVLAAAGLPVLPSVTVTTREWARD 177
Query: 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVEL 294
+ D + VKP R GSS+G++ + + L A + E D +V+VE
Sbjct: 178 AAG---CRARADEIGYPLFVKPARGGSSLGISKVHDATE-LDGAIELAFEH-DPKVLVET 232
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
E VL D P +P E+ + G+ + +++ KYLP +
Sbjct: 233 AAIDAREVECGVL---QAVDGTPETSVPAEI--RISGAHE------FYDFAAKYLPEEHT 281
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P P ++ +RE + F+ +G AR+D + LP V + T G T
Sbjct: 282 ELDVPADLPEALVRQVRELSVRAFEAVGCEGLARVDFFVLPGERLVVNEINTMPGFTP-- 339
Query: 415 TILFTDINLISGMEQTSFL 433
T +F + SG++ + +
Sbjct: 340 TSMFPRMWAASGLDYPALV 358
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE GV Y G GV+AS MDK + L A L VL
Sbjct: 110 VFPLLHGPWGEDGTIQGLLEMAGVRYVGAGVLASAVSMDKAYMKVVLAA-AGLPVLPSVT 168
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLCCAEDL 748
R+ W + + + L VKPAR G S G++++ A +L
Sbjct: 169 VTTRE-----------WARDAAGCRARADEIGYPLFVKPARGGSSLGISKVHDATEL 214
>gi|288936910|ref|YP_003440969.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
gi|288891619|gb|ADC59937.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
Length = 365
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 161/370 (43%), Gaps = 44/370 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y +
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQ-GLWHINDAGNYLLNAQ 62
Query: 135 TPADFDFKLES--LAQGFGSLSE------FAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + + LAQ G ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALRPSTVTLAQIPGREAQQLINADSGQPLAA-IDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK + G P L + N ++ S V
Sbjct: 122 MANLPFVGSDVLGSAAC---MDKDVTKRLLRDAGLAVAPFITL--TRANRAQFSFADVEA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+G++ + +A + E D +VVVE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGISKVKNE-EQYHQAVALAFE-FDHKVVVEQGIK-GREIE 230
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D HP E+ L + + Y KY+ Q P
Sbjct: 231 CAVL----GND-HPQASTCGEIVLNSE----------FYAYDTKYIDDQGAQVVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D + + V + T G T ++ +
Sbjct: 276 PEINDKIRAIAVQAYQTLGCSGMARVDVFLTADNEVVINEINTLPGFTNIS--MYPKLWQ 333
Query: 424 ISGMEQTSFL 433
SG++ TS +
Sbjct: 334 ASGLDYTSLI 343
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 113/285 (39%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L LA +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + + ++ +KL L VKPA G S G++++ E Y +A
Sbjct: 161 LTRANRAQFS---------FADVEAKLGLP-LFVKPANQGSSVGISKVKNEEQ---YHQA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ L F E D + Q KG
Sbjct: 208 VA---------------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDHPQASTCGEIVL--NSEFYAYDTKYIDDQGAQVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCSGMARVDVFLTADN-EVVINEINTLPGFT 323
>gi|194468272|ref|ZP_03074258.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23]
gi|194453125|gb|EDX42023.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23]
Length = 378
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 169/390 (43%), Gaps = 50/390 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSNTP 136
L + L+ GG S+E +S SA ++ D + + V + ++ +Q ++ P
Sbjct: 5 LHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEP 64
Query: 137 ADFDFKLESLAQGFGSL---SEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVLEKYN 189
D + +A+ + + S A +A N +D FP IHG GEDG IQ + + N
Sbjct: 65 ED-----QVVAEAYQKMNMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLN 119
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
P+VG+ A +FDK +S+ G P ++ + N ++ S + KL
Sbjct: 120 KPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVV--TPENRADYSWGRIEEKL---G 174
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
VKP + GSS+G+ + +KA + D +++VE + E +L
Sbjct: 175 NLTFVKPAKQGSSVGIHRVTNA-EEYEKALDDAFK-YDYKILVEQGIANPQEIEISILG- 231
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
+ HP+ G+V V + D ++Y K++ V + P + P +++
Sbjct: 232 ----NEHPIA--------SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDE 279
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
I + A ++ LG+ ARID FL S +V E +T G FT+I+L M +
Sbjct: 280 ITDMALKAYKALGMKGMARID--FLVDSNNVPYLGEP---NTLPG---FTNISLYPQMWE 331
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S G S+S+++ +I F
Sbjct: 332 VS---------GISYSDLIDRLIQLGLQEF 352
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 110/284 (38%), Gaps = 63/284 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG +GEDGT+Q L + PY G + AS DK T ++
Sbjct: 98 FPVIHGNLGEDGTIQGLFKLLNKPYVGSNIAASAMSFDKDLTKKIISQAG---------- 147
Query: 699 VRRKEDLLKTP--IVDI-WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+R ++ TP D W + KL T VKPA+ G S G+ R+ AE+ Y KAL
Sbjct: 148 IRNTPYVVVTPENRADYSWGRIEEKLGNLTF-VKPAKQGSSVGIHRVTNAEE---YEKAL 203
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
++ F + + L+ +G +
Sbjct: 204 DDA--------FKYDYKI-----------------------------------LVEQGIA 220
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI + ++G + S + +V V + E KF +G+ P + +D
Sbjct: 221 NPQEIEISILGNEHPIASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVK--LPQYLVD 278
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ AL ++G +RID V+ +N L E NT+PG T
Sbjct: 279 EITDMALKAYKALGMKGMARIDFLVDSNNVPYL-GEPNTLPGFT 321
>gi|429107598|ref|ZP_19169467.1| D-alanine--D-alanine ligase [Cronobacter malonaticus 681]
gi|426294321|emb|CCJ95580.1| D-alanine--D-alanine ligase [Cronobacter malonaticus 681]
Length = 366
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 164/404 (40%), Gaps = 59/404 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQ-GQWHVNDASRYLLNAE 62
Query: 135 TPADFDF----KLESLAQGFGSLSEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA K +L G S + E +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALHRSEKNVALIPGL-SQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+G + DK A + G P L + N ++ V +L
Sbjct: 122 MANIPFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRANRQRITFEDVKAQL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V D + + L D +VVVE ++ G E
Sbjct: 179 --GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C +V V +F ++Y KY+ Q P
Sbjct: 233 VLGNDSPQASTCGEIV-----VSSEF------------YSYDTKYIDDQAARVVVPADIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V + IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 276 PDVNDKIRAIAIRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ Q S G + ++ +I A R A+ S
Sbjct: 328 YPKLWQAS---------GIGYQELITRLIELALERHQADAALKS 362
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 126/320 (39%), Gaps = 72/320 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+T+ + R++ I E L VKPA G S GV+++
Sbjct: 158 FITLTRANRQR----------ITFEDVKAQLGLPLFVKPANQGSSVGVSKV--------- 198
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
N ++ H + + ++ E +
Sbjct: 199 -------------NDEAQYHAAVALAFEFDHKVVVETGI--------------------- 224
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
KG EI V+G S + V S + S + K+ + P + ++
Sbjct: 225 KGR----EIECAVLGNDSPQASTCGEIVV--SSEFYSYDTKYIDDQAARVVVP--ADIAP 276
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
+ DK + AL+ G +R+D F+ DN EV+I E+NT+PG T + ++ L +
Sbjct: 277 DVNDKIRAIAIRAFQALECAGLARVDVFLTPDN-EVIINEINTLPGFT--NISMYPKLWQ 333
Query: 932 QPPMYPHQFFRKVLDLGSER 951
+ + ++++L ER
Sbjct: 334 ASGIGYQELITRLIELALER 353
>gi|313122929|ref|YP_004033188.1| d-alanine-d-alanine ligase a [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312279492|gb|ADQ60211.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 362
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 160/389 (41%), Gaps = 51/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTP 136
+VGLI GG S+E +S+ SA ++ I D V +I + Y S A Y P
Sbjct: 6 QVGLIFGGNSSEYEVSITSAGNIYKEIDKDKFDVHPIWITNS--GYVASEADSYKVLEEP 63
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
K + A +L E A +D++FP +HG GEDG +Q + + PFVG
Sbjct: 64 GYMVEKTDKTAN-LSNLIELASR--PELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++++ + + + +LS +V+ +L +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRY--EYEDAKNQKLSYDWVSGQL--GTSN 176
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP+ GSS+G+T V D A+ + DD+V+VE + G TA++
Sbjct: 177 LFVKPSNQGSSVGIT---HVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVL---- 229
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D HPVV + + + ++Y KY P + P +
Sbjct: 230 -GND-HPVVSGVGRI---------INADNTWYSYENKYSTESTTTLQIPAQIPAETAEKV 278
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A ++Q ARID S G ++F ++N + G
Sbjct: 279 QENALKIYQITECSGMARIDSMLRESD----------------GEVIFNELNALPGFTNI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S+ +++ +I A R+
Sbjct: 323 SMYPKLFEEAGISYPDLITRLIRLAEERY 351
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 123/321 (38%), Gaps = 66/321 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG LQ L P+ G V+A+ MDK T + LA + + K
Sbjct: 91 LFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAVTMDKEFTKI----LAQRAGVPVAK 146
Query: 698 DVRRK----EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V K ED + W ++ +L L VKP+ G S G+ + D + Y +
Sbjct: 147 WVSIKRYEYEDAKNQKLSYDW--VSGQLGTSNLFVKPSNQGSSVGITHVT---DDSNYAE 201
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E ++L+ E V T+
Sbjct: 202 ALAEAF------------------KYDDKVLVEEGIVGTE-------------------- 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
VE V G+ H ++ V + S E K+ + L P +
Sbjct: 224 ----VETAV-----LGNDHPVVSGVGRIINADNTWYSYENKYSTESTTTLQIPAQ--IPA 272
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E +K ++ I + G +RID+ + +GEV+ E+N +PG T + ++ L E
Sbjct: 273 ETAEKVQENALKIYQITECSGMARIDSMLRESDGEVIFNELNALPGFT--NISMYPKLFE 330
Query: 932 QPPMYPHQFFRKVLDLGSERF 952
+ + +++ L ER+
Sbjct: 331 EAGISYPDLITRLIRLAEERY 351
>gi|157369610|ref|YP_001477599.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
gi|157321374|gb|ABV40471.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
Length = 367
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 106/401 (26%), Positives = 163/401 (40%), Gaps = 53/401 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + I+ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GQWHINDASNYLLNAE 62
Query: 135 TPADFDFKLESL------AQGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + Q L E A +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALIALNRSNKNVALIPGQEKQQLIESGSQGALGQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK + G P L S N ++ ++ +L
Sbjct: 123 ANLPFVGAGVLGSAVSMDKDVTKRLLRDAGLAIAPFVTLTRS--NRAKFDFEQLSERL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ V D + L D +V+VE +AI
Sbjct: 179 -GLPLFVKPANQGSSVGVS---KVQDRAGFEAAVALAFSFDHKVLVE---------SAI- 224
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
VG +C VL E + G + + DA ++Y KY+ Q P V
Sbjct: 225 --VGREIEC--AVLGNDEPQASLCGEIVL--SDAFYSYDTKYINEQGAQVIVPAAIEPEV 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ IR+ A F+ L AR+D + P + ++ +IN + G
Sbjct: 279 SDKIRDVALKAFRALECFGLARVDVFLTPDN-----------------NVVINEINTLPG 321
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
S + + G S+S ++ +I A R + NS
Sbjct: 322 FTNISMYPKLWAASGVSYSQLITRLIELAMERHQQDRALNS 362
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 129/317 (40%), Gaps = 66/317 (20%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L LA +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGLLRMANLPFVGAGVLGSAVSMDKDVTKRLLRDAGLAIAPFVT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R K D + +L+ +L L VKPA G S GV+++ +D + A
Sbjct: 161 LTRSNRAKFD---------FEQLSERLGL-PLFVKPANQGSSVGVSKV---QDRAGFEAA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ +FS H ++L S +
Sbjct: 208 VAL--------AFSFDH----------------------KVLVESAIVGR---------- 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G SL + + ++ S + K+ G + P A + E
Sbjct: 228 ----EIECAVLGNDEPQASLCGEIVLSDA--FYSYDTKYINEQGAQVIVPAA--IEPEVS 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
DK + AL+ G +R+D F+ DN V+I E+NT+PG T + ++ L
Sbjct: 280 DKIRDVALKAFRALECFGLARVDVFLTPDN-NVVINEINTLPGFT--NISMYPKLWAASG 336
Query: 935 MYPHQFFRKVLDLGSER 951
+ Q ++++L ER
Sbjct: 337 VSYSQLITRLIELAMER 353
>gi|284993431|ref|YP_003411986.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160]
gi|284066677|gb|ADB77615.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160]
Length = 329
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 123/293 (41%), Gaps = 38/293 (12%)
Query: 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFIT 220
AA D VF +HG GEDG ++ VL+ VP+VG+ + +CR A+DK A + G T
Sbjct: 66 AAPADAVFIALHGATGEDGALRAVLDLAGVPYVGSPAASCRLAWDKPAAKSVVRSAGVTT 125
Query: 221 VPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAK 279
L S EL V + + G ++VKP GS++GV V D A
Sbjct: 126 PDWVALPHSTFR--ELGAGAVLDLIVARLGLPLMVKPASGGSALGVQKVSRVED--LPAA 181
Query: 280 GIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKD 339
+ D V+VE F++ G E V+D+G G P +V++ +
Sbjct: 182 MVSCFAYGDTVMVERFVD-GVELALSVVDLGEGPQALP--------------AVEIAPES 226
Query: 340 AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTH 399
+F+Y +Y P YH P R V E A + + LGL D +R D P
Sbjct: 227 GVFDYTSRYTP-GLTEYHAPARVSDEVAGKAAELAVQVHRALGLADLSRTDAIVGPD--- 282
Query: 400 VFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
G + F ++N+ G+ +TS G S ++L ++
Sbjct: 283 --------------GEVHFLEVNVSPGLTRTSMFPMAVEASGSSLGDVLAGLL 321
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 129/324 (39%), Gaps = 64/324 (19%)
Query: 604 KKHSWFTGFDIADELP-------MRHSINEWIK-LAKENQATVFIAVHGGIGEDGTLQSL 655
++ S +G +A+EL +R + E + LA VFIA+HG GEDG L+++
Sbjct: 30 REVSLSSGTQVAEELARAGVEAELRDADAELLPGLAAAPADAVFIALHGATGEDGALRAV 89
Query: 656 LEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWH 715
L+ GVPY G + + DK A A + + GV T + + +
Sbjct: 90 LDLAGVPYVGSPAASCRLAWDKPA---AKSVVRSAGVTTPDWVALPHSTFRELGAGAVLD 146
Query: 716 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIE 775
+ ++L L VKPA G + GV ++ EDL A+ C A+G
Sbjct: 147 LIVARLGLP-LMVKPASGGSALGVQKVSRVEDLP---AAMVSCF----------AYG--- 189
Query: 776 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835
+ ++ E FV+ VE+ + V+ G +
Sbjct: 190 ------DTVMVERFVD-------------------------GVELALSVV-DLGEGPQAL 217
Query: 836 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSR 895
P+V + + ++ G+ PA + S E K + + AL L SR
Sbjct: 218 PAVEIAPESGVFDYTSRYT--PGLTEYHAPARV-SDEVAGKAAELAVQVHRALGLADLSR 274
Query: 896 IDAFVNVDNGEVLIIEVNTVPGMT 919
DA V D GEV +EVN PG+T
Sbjct: 275 TDAIVGPD-GEVHFLEVNVSPGLT 297
>gi|116511200|ref|YP_808416.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
SK11]
gi|385837369|ref|YP_005874999.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
A76]
gi|414073642|ref|YP_006998859.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
UC509.9]
gi|116106854|gb|ABJ71994.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
SK11]
gi|358748597|gb|AEU39576.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
A76]
gi|413973562|gb|AFW91026.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 367
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 174/398 (43%), Gaps = 50/398 (12%)
Query: 65 DQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAY 124
D+ ++K+ R + L+ GG SAER +S+ SA SV+ + +V+ Y+I +
Sbjct: 9 DKAVSKKGRNMSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGE-- 66
Query: 125 AISSAQVYSNTPADFDFKLES-LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
Q +++TPA+ + L + LA+ + +S A + +VFP +HG GEDG IQ
Sbjct: 67 -FIKTQEFTDTPAEEEKLLTNDLAESYPKISPAA--IYEKDAVVFPVLHGPMGEDGSIQG 123
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
LE + +VG + DK A G VP ++ ++ N++E++ V
Sbjct: 124 FLEILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVP-YVAAFADENQAEIAQEVVEK 182
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSE 301
P V VKP GSS+G++ +D L + + E D+RVV+E ++ E
Sbjct: 183 LEFP----VFVKPANMGSSVGIS----KVDDLADLQPALSEAYKYDNRVVIEQGVD-ARE 233
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL G+ D LP EV DV ++Y KY+ ++ P +
Sbjct: 234 IECAVL--GNNSDVSAT--LPGEV------VKDV----GFYDYNSKYI-DNKIQMDIPAK 278
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ I+E A ++ + +R D +F+ T+ G + ++
Sbjct: 279 VSADLAQKIQEYAKKAYKAVNGAGLSRCD-FFV----------------TKDGNVYLNEV 321
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
N I G Q S +G S+S+++ ++ A F
Sbjct: 322 NAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETF 359
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 125/320 (39%), Gaps = 62/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE + Y GP ++++ + MDK+ LA + +GV
Sbjct: 102 EKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMDKL---LAKHVFEAVGV 158
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
V +I E+ KL+ VKPA G S G++++ +DL
Sbjct: 159 ----PQVPYVAAFADENQAEIAQEVVEKLEFPVF-VKPANMGSSVGISKV---DDLADLQ 210
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
AL E K +R++ +
Sbjct: 211 PALSEAY--------------------------------------------KYDNRVVIE 226
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI V+G + + +P VK+ G K+ I + P + +S +
Sbjct: 227 QGVDAREIECAVLGNNSDVSATLPGEVVKDVG-FYDYNSKYIDNK-IQMDIP--AKVSAD 282
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
K ++ + A+ G SR D FV D G V + EVN +PG T + ++ L E
Sbjct: 283 LAQKIQEYAKKAYKAVNGAGLSRCDFFVTKD-GNVYLNEVNAIPGFTQWS--MYPLLWEN 339
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K++DL E F
Sbjct: 340 MGLSYSDLIEKLVDLAKETF 359
>gi|386775234|ref|ZP_10097612.1| D-alanine--D-alanine ligase [Brachybacterium paraconglomeratum
LC44]
Length = 371
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 105/406 (25%), Positives = 172/406 (42%), Gaps = 71/406 (17%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SNTP 136
V L+ GG S E GIS +A +L I R + ++ A I+ + S+ P
Sbjct: 5 VALLFGGRSGEHGISCITAGGILAAID------RTRF---DVVAIGITPEGRWVHVSDDP 55
Query: 137 ADFDF----KLESLAQGFGSLSEFAEHLA-----------------ANVDIVFPTIHGRF 175
+D+ E A G L + H A A VD+V+P +HG +
Sbjct: 56 SDWTMVDGRAPEVAADGDEVLLPSSRHRAGERTALRVVREGRVEPLAEVDVVWPLLHGPY 115
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
GEDG +Q +LE ++P+VG+G A A DK + + G P ++ E ++
Sbjct: 116 GEDGTVQGMLEMLDIPYVGSGILASATAMDKAATKVALRAAGIECAPGIVVH--EDRWAD 173
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVV 292
+ + + + VKP RAGSS+GV+ VA + ++K A E D +V++
Sbjct: 174 GAGRVLAHLEQHHPRPWFVKPARAGSSLGVSRVEVASQLEHAMKTA---FRE--DPKVLI 228
Query: 293 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
E L G E VL G + P LP EV++ +D ++Y KY
Sbjct: 229 EEGLV-GREIECGVLAARDGGE--PRTTLPGEVKV--GADLD------FYDYEAKYFGKG 277
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
V+ P P V+ RE A F LGL AR+D +F +++ +
Sbjct: 278 TVSIDVPAGLPDGVLEEAREIARRAFGALGLEGLARVD---------MFVTADHR----- 323
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ ++N + G S +G S+++++ ++ A SR
Sbjct: 324 ---VIVNEVNTMPGFTPYSMFPVLWESMGLSYADLIADLVDQAASR 366
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 116/289 (40%), Gaps = 54/289 (18%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
V+ +HG GEDGT+Q +LE +PY G G++AS T MDK AT +AL +
Sbjct: 106 VVWPLLHGPYGEDGTVQGMLEMLDIPYVGSGILASATAMDKAATKVALRAAG----IECA 161
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ ED + L + + VKPAR G S GV+R+ A L
Sbjct: 162 PGIVVHEDRWADGAGRVLAHL-EQHHPRPWFVKPARAGSSLGVSRVEVASQLE------- 213
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
H M P++LI E V R
Sbjct: 214 --------------HAMKTAFREDPKVLIEEGLV------------------------GR 235
Query: 817 WVEITVGVIGKCGSMHSLMPS-VTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
+E V G + +P V V D E K+ G +++ P + L+
Sbjct: 236 EIECGVLAARDGGEPRTTLPGEVKVGADLDFYDYEAKYFGKGTVSIDVPAG--LPDGVLE 293
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ ++ AL LEG +R+D FV D+ V++ EVNT+PG TP ++
Sbjct: 294 EAREIARRAFGALGLEGLARVDMFVTADH-RVIVNEVNTMPGFTPYSMF 341
>gi|374709366|ref|ZP_09713800.1| D-alanine--D-lactate ligase [Sporolactobacillus inulinus CASD]
Length = 355
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 153/358 (42%), Gaps = 58/358 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSV---LDHIQGDDLLV------RCYYIDRNLNAYAISS 128
+ VG++ GG S+E +SL SA ++ LD + + +L+ + D L A +
Sbjct: 4 ITVGVLFGGQSSEHKVSLKSAHTIITNLDREKYEPILIGIAEDGKWKLYDGPLEAIPQDT 63
Query: 129 AQVYSNTPADF--DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
+ TP D L + G +SE ++D+VFP +HG+ GEDG IQ +LE
Sbjct: 64 WEQSDCTPIVLLPDPSQHGLLKTVGGMSE-----KIHLDVVFPVLHGKNGEDGKIQSLLE 118
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
+P+VG G + DK D S + K+ I VP + ++E +L+
Sbjct: 119 LAGIPYVGCGVLSSAMCMDK-DVSHRVVKEAGIRVPESIALTGAISEEQLAKGMTGFNY- 176
Query: 247 PNSGKVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGI-----ILEGIDDRVVVELFLEG 298
V VKP GSS GVT ++ ++++A+ I EGID V L
Sbjct: 177 ----PVFVKPVSGGSSYGVTKVEEESKLMAAIREAQKYDMKIGIEEGIDGCEVGCSILGH 232
Query: 299 GSEFTAIVLD---VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA 355
G + T +D V +G+ F D+ +K + N +
Sbjct: 233 GDDLTVGEVDQIVVTNGY---------------FHIHQDMFKKTGLEN----------AS 267
Query: 356 YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
H P + P VV I++ A +F+ L AR+D + P + VF+ T G T +
Sbjct: 268 IHVPAQLPQVVQEKIKDTAKAIFRALCCTGIARVDLFLTPDNEVVFNEVNTMPGFTSY 325
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 677
VF +HG GEDG +QSLLE G+PY G GV++S CMDK
Sbjct: 99 VFPVLHGKNGEDGKIQSLLELAGIPYVGCGVLSSAMCMDK 138
>gi|39931167|sp|Q8PDW3.1|DDLA_XANCP RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|21111185|gb|AAM39541.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66571909|gb|AAY47319.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris
str. 8004]
Length = 373
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 168/409 (41%), Gaps = 52/409 (12%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY- 132
G R +RVGLI GG SAE +SL SAR++L + ID+ + +S+ + +
Sbjct: 5 GMRRIRVGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQ-GQWHLSAQESFL 63
Query: 133 --SNTPADFDFKL--ESLAQGFGSLSEF-----AEHLAANVDIVFPTIHGRFGEDGGIQE 183
++ P+ + LA G+ S AE A +D+VFP +HG GEDG +Q
Sbjct: 64 LDADDPSRIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQG 123
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+G A DK A + G P ++++
Sbjct: 124 LLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQF 183
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
L + VKP GSS+GV+ + A + L D +V+VE + G E
Sbjct: 184 GL-----PLFVKPANQGSSVGVSQVRSA-EEFSAALELALR-YDHKVLVEAAI-AGREIE 235
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL + P + EV + DA ++Y+ KY+ A P
Sbjct: 236 CAVLG-----NATPQASVCGEVVVH----------DAFYSYQTKYIRDDGAATVIPADID 280
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ I++ A +Q L AR+D VF ++ G I+ ++N
Sbjct: 281 AHTQHRIQQCALQAYQALDCAGMARVD---------VFLCAD--------GRIVINEVNT 323
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS-YNSVSSH 471
+ G + S + G + +++ +I A R + Y+SV +H
Sbjct: 324 LPGFTRISMYPKLWEASGLDYRSLVTRLIELALERHADDGRLYSSVVTH 372
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 179/481 (37%), Gaps = 146/481 (30%)
Query: 490 GIREVFV--IFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCS-----SGM 542
G+R + V IFGG ++E +VSL S N+ LQA + P L+ ID S
Sbjct: 5 GMRRIRVGLIFGGKSAEHEVSLQSARNI---LQALDPQRFEPVLI--GIDKQGQWHLSAQ 59
Query: 543 DANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEG 602
++ + D D SR+ LRH+ + A+ P A ++ LR
Sbjct: 60 ESFLLDADDPSRIA--------LRHSGRGL------AVLP--GAASAQLR---------- 93
Query: 603 LKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVP 662
+++ LA+ + VF VHG +GEDG+LQ LL +P
Sbjct: 94 --------------------AVDAEQALAQID--VVFPIVHGTLGEDGSLQGLLRMANLP 131
Query: 663 YTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ 722
+ G GV+ S MDK + K V R L P ++
Sbjct: 132 FVGSGVLGSAVAMDK----------------DMAKRVLRDAGLEVAPFACFTRHTAAQAD 175
Query: 723 CKTLC--------VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMI 774
+TL VKPA G S GV+++ AE+ + ALE L
Sbjct: 176 VQTLIAQFGLPLFVKPANQGSSVGVSQVRSAEEFSA---ALELAL--------------- 217
Query: 775 EMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 834
+ +++ + EI V+G S+
Sbjct: 218 -----------------------------RYDHKVLVEAAIAGREIECAVLGNATPQASV 248
Query: 835 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQL 890
V V ++ S + K+ G A+++ + + RI+ A AL
Sbjct: 249 CGEVVVHDA--FYSYQTKYIRDDG------AATVIPADIDAHTQHRIQQCALQAYQALDC 300
Query: 891 EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950
G +R+D F+ D G ++I EVNT+PG T + ++ L E + ++++L E
Sbjct: 301 AGMARVDVFLCAD-GRIVINEVNTLPGFT--RISMYPKLWEASGLDYRSLVTRLIELALE 357
Query: 951 R 951
R
Sbjct: 358 R 358
>gi|188492212|ref|ZP_02999482.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
gi|188487411|gb|EDU62514.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
Length = 364
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 162/398 (40%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK + G P L + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFNTL--TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 110/282 (39%), Gaps = 60/282 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + N
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFNT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R + + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD---- 209
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
L F E D + Q KG
Sbjct: 210 --------------------------LAF----EFDHKVIVEQGI---------KGR--- 227
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V+G S + + + D + + K+ G + P A ++ E DK
Sbjct: 228 -EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEINDKI 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 283 RAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|417791089|ref|ZP_12438582.1| hypothetical protein CSE899_10732 [Cronobacter sakazakii E899]
gi|429114328|ref|ZP_19175246.1| D-alanine--D-alanine ligase [Cronobacter sakazakii 701]
gi|449309296|ref|YP_007441652.1| D-alanyl-alanine synthetase A [Cronobacter sakazakii SP291]
gi|333954832|gb|EGL72641.1| hypothetical protein CSE899_10732 [Cronobacter sakazakii E899]
gi|426317457|emb|CCK01359.1| D-alanine--D-alanine ligase [Cronobacter sakazakii 701]
gi|449099329|gb|AGE87363.1| D-alanyl-alanine synthetase A [Cronobacter sakazakii SP291]
Length = 366
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 158/402 (39%), Gaps = 55/402 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG++ GG SAE +SL SA++++D I + V ID+ + +++ N
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAED 63
Query: 138 DFDFKLESLAQGFGSLSEFAEH---------LAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
L + + +E +D++FP +HG GEDG +Q +L
Sbjct: 64 PARIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMA 123
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+PFVG+G + DK A + G P L + N ++ V +L
Sbjct: 124 NIPFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRANRQRITFEDVKAQL--- 178
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVL 307
+ VKP GSS+GV+ V D + + L D +VVVE ++ G E VL
Sbjct: 179 GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIK-GREIECAVL 234
Query: 308 --DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
D C +V V +F ++Y KY+ Q P
Sbjct: 235 GNDSPQASTCGEIV-----VSSEF------------YSYDTKYIDEQAARVVVPADIAPD 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 278 VNEKIRAIAIRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISMYP 329
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ Q S G + ++ +I A R A+ S
Sbjct: 330 KLWQAS---------GIGYQELITRLIELALERHQADAALKS 362
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R++ I E L VKPA G S GV+++
Sbjct: 158 FITLTRANRQR----------ITFEDVKAQLGLPLFVKPANQGSSVGVSKV 198
>gi|116333877|ref|YP_795404.1| D-alanyl-alanine synthetase A [Lactobacillus brevis ATCC 367]
gi|122269436|sp|Q03QZ9.1|DDL_LACBA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|116099224|gb|ABJ64373.1| D-alanine--D-alanine ligase [Lactobacillus brevis ATCC 367]
gi|238767638|dbj|BAH66654.1| D-alanine:D-alanine ligase [Lactobacillus brevis]
Length = 380
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 163/390 (41%), Gaps = 50/390 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA---QVY-- 132
L VGL+ GG S+E +S SA ++ D + D V + + R+ + +S A +V+
Sbjct: 7 LHVGLLFGGNSSEHDVSKRSAHNIYDAMDKDRYNVSLFLLTRD--GFVLSDAASRRVFDG 64
Query: 133 ---SNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ A+ K+++ + + ++ A ++D+ FP IHG GEDG IQ +
Sbjct: 65 EDEATVAAEEQAKVDA-SNPLAPIWNLSQ--AKDIDVFFPIIHGNLGEDGTIQGLFRLLK 121
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
PFVG+G A +FDK ++ G +L + N ++ + ++L N
Sbjct: 122 KPFVGSGVLASAVSFDKDMTKQVLTAHGIRNTKYVVL--TPDNRADFDYATIQSRLGDN- 178
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V +KP GSS+G+ A V + L D +V+VE ++G E +L
Sbjct: 179 --VFIKPANQGSSVGIHKASNVQEYLDGVADAFR--YDYKVLVEQTIDGPQEVEISILGN 234
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
P +L G++ V E D ++Y K++ V + P + +
Sbjct: 235 EQ----------PQASKL---GAIRVPESDVFYDYNNKFVDASGVTFEVPVKLSDELTQE 281
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
I + + LGL ARID Y ++ G ++N + G
Sbjct: 282 ITQMGLQTYAALGLKGMARID-----------------YLVSKDGVPYVGEVNTLPGFTN 324
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S Q G ++++++ +I A S F
Sbjct: 325 ISLYPQLWQATGINYADLIDRLIELALSEF 354
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 108/283 (38%), Gaps = 61/283 (21%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTIN 696
F +HG +GEDGT+Q L P+ G GV+AS DK T L + + + + +
Sbjct: 100 FPIIHGNLGEDGTIQGLFRLLKKPFVGSGVLASAVSFDKDMTKQVLTAHGIRNTKYVVLT 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
D R D + + S+L + +KPA G S G+ + A ++ Y+ +
Sbjct: 160 PDNRADFD---------YATIQSRL-GDNVFIKPANQGSSVGIHK---ASNVQEYLDGVA 206
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ ++ V ++ + Q
Sbjct: 207 DAFR-------------------------YDYKVLVEQTIDGPQ---------------- 225
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
E+ + ++G S + ++ V ES KF +G+ P +S E +
Sbjct: 226 --EVEISILGNEQPQASKLGAIRVPESDVFYDYNNKFVDASGVTFEVPVK--LSDELTQE 281
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
Q AL L+G +RID V+ D G + EVNT+PG T
Sbjct: 282 ITQMGLQTYAALGLKGMARIDYLVSKD-GVPYVGEVNTLPGFT 323
>gi|433610256|ref|YP_007042625.1| D-alanine-D-alanine ligase [Saccharothrix espanaensis DSM 44229]
gi|407888109|emb|CCH35752.1| D-alanine-D-alanine ligase [Saccharothrix espanaensis DSM 44229]
Length = 314
Score = 89.7 bits (221), Expect = 7e-15, Method: Composition-based stats.
Identities = 100/380 (26%), Positives = 155/380 (40%), Gaps = 72/380 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S ER +SL S R + ++ L+V + D L
Sbjct: 6 VAVLSGGLSHEREVSLRSGRRLSAALRSVGLVVEEWDADAQL------------------ 47
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
L+ +H D V +HG GE+G +Q +LE VPFVGT SRA
Sbjct: 48 -------------LTRLRDH---RPDAVVVALHGGEGENGSVQTILELVGVPFVGTDSRA 91
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTR 258
CR+A+DK A E+++ G T +L + EL V + + G +++KP +
Sbjct: 92 CRRAWDKPTAKGEIARAGLATPEWAVLPHATFR--ELGAKPVLDAMVEQFGLPLMLKPDQ 149
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G V D G + G D V+ E ++ G E V+D G P
Sbjct: 150 GGSALGAQVVREAADLPAAMVGCLAYG--DTVLAERYV-AGVEVAVTVVDGPDG----PY 202
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
L P V++ ++ I++Y +Y +H P R ++ E A
Sbjct: 203 ALPP----------VEIVPENGIYDYTARY-TAGLTDFHAPARLDEKAAQAVGELAVAAH 251
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LGL D +R D V ++ GT+ F ++N+ G+ +TS L
Sbjct: 252 RLLGLRDVSRTDA--------VVAAD---------GTVHFLEVNVSPGLTETSLLPMAVE 294
Query: 439 KVGFSHSNILRTIIGHACSR 458
G S I +I A SR
Sbjct: 295 AAGASLGEIYAGLIERAVSR 314
Score = 45.8 bits (107), Expect = 0.12, Method: Composition-based stats.
Identities = 78/314 (24%), Positives = 120/314 (38%), Gaps = 75/314 (23%)
Query: 624 INEW-------IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 676
+ EW +L V +A+HGG GE+G++Q++LE GVP+ G A + D
Sbjct: 38 VEEWDADAQLLTRLRDHRPDAVVVALHGGEGENGSVQTILELVGVPFVGTDSRACRRAWD 97
Query: 677 KVATSLALNHLADLGVLTINKDVRRK---EDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733
K A +A G+ T V +L P++D E L +KP +
Sbjct: 98 K---PTAKGEIARAGLATPEWAVLPHATFRELGAKPVLDAMVEQFG----LPLMLKPDQG 150
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G + G + A DL A+ CL A+G + ++ E +V
Sbjct: 151 GSALGAQVVREAADLPA---AMVGCL----------AYG---------DTVLAERYVAG- 187
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 853
VE+ V V+ ++L P V E+G I ++
Sbjct: 188 ------------------------VEVAVTVVDGPDGPYALPPVEIVPENG-IYDYTARY 222
Query: 854 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGF---SRIDAFVNVDNGEVLII 910
G P + +A+ EL A +L G SR DA V D G V +
Sbjct: 223 TAGLTDFHAPARLDEKAAQAVG------ELAVAAHRLLGLRDVSRTDAVVAAD-GTVHFL 275
Query: 911 EVNTVPGMTPSTVL 924
EVN PG+T +++L
Sbjct: 276 EVNVSPGLTETSLL 289
>gi|194432541|ref|ZP_03064827.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012]
gi|417674357|ref|ZP_12323790.1| D-alanine--D-alanine ligase [Shigella dysenteriae 155-74]
gi|194419102|gb|EDX35185.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012]
gi|332085641|gb|EGI90805.1| D-alanine--D-alanine ligase [Shigella dysenteriae 155-74]
Length = 364
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + +LAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATTLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
+L D C +VL + Y KY+ P
Sbjct: 230 ECAILGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQSYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI ++G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAILGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQSYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|383190921|ref|YP_005201049.1| D-alanine--D-alanine ligase [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371589179|gb|AEX52909.1| D-alanine--D-alanine ligase [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 365
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 161/394 (40%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I V ID+ + I+ A Y +
Sbjct: 4 LRVGIIFGGKSAEHEVSLQSAKNIVDAIDKQRFDVTLLGIDKK-GEWHINDASNYLINAE 62
Query: 135 TPADFDFKLE----SLAQGFGSLSEFAEHLAA---NVDIVFPTIHGRFGEDGGIQEVLEK 187
P+ +L G H A+ VD+VFP +HG GEDG +Q +L
Sbjct: 63 NPSLIALNRSNNQVALIPGQTENQLIETHSASALSQVDVVFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+ FVG+G + DK + G P L + N + + V+ +L
Sbjct: 123 ANIAFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVCL--TRANRQKNTFASVSQQLGL 180
Query: 248 NSGKVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+ +KP GSS+GV+ G +L +A D +V+VE ++ G E
Sbjct: 181 ---PLFIKPANQGSSVGVSKVSDEAGYQRALDEAF-----SFDHKVLVESAIK-GREIEC 231
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G D HP + EV L D ++Y KY+ + P P
Sbjct: 232 AVL----GND-HPQASVCGEVILH----------DEFYSYDTKYINESGASVAVPADLPQ 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ + IR A FQ L AR+D + TE G ++ +IN +
Sbjct: 277 EIHDRIRVIALQAFQVLECRGMARVDVFL-----------------TEQGDVVINEINTL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G S + + G S++ ++ +I A +
Sbjct: 320 PGFTNISMYPKLWAASGLSYTELITRLIALALEQ 353
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 119/289 (41%), Gaps = 72/289 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
VF VHG +GEDG+LQ LL + + G GV+ S MDK T L LA +
Sbjct: 101 VVFPIVHGTLGEDGSLQGLLRMANIAFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVC 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R+K + + ++ +L L +KPA G S GV+++ D Y +A
Sbjct: 161 LTRANRQK---------NTFASVSQQLGLP-LFIKPANQGSSVGVSKVS---DEAGYQRA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L+E +FS H +++ +
Sbjct: 208 LDE--------AFSFDH------------------------------------KVLVESA 223
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
+ EI V+G S+ V + + + S + K+ +G ++ P +
Sbjct: 224 IKGREIECAVLGNDHPQASVCGEVILHD--EFYSYDTKYINESGASVAVP------ADLP 275
Query: 875 DKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ RI +IA L+ G +R+D F+ + G+V+I E+NT+PG T
Sbjct: 276 QEIHDRIRVIALQAFQVLECRGMARVDVFL-TEQGDVVINEINTLPGFT 323
>gi|319938752|ref|ZP_08013116.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV]
gi|319811802|gb|EFW08068.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV]
Length = 348
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 167/384 (43%), Gaps = 51/384 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I + V+ Y+I + A Q +S+ PAD
Sbjct: 5 QIILLYGGRSAERKVSVLSAESVMHAINYNKFFVKTYFITQ---AGDFIKTQEFSSKPAD 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 62 NE-KLMTNDSVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G ++E ++ N + V KP
Sbjct: 121 SSSVAMDKITTKRVLASAGIPQVPYVAVIEGENIDEK-------IAAVEANLTYPVFTKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L+ A + + D RV++E A ++VG
Sbjct: 174 SNMGSSVGISKSENQ-DELRSALELAFK-YDSRVLIE------QGVNAREIEVG------ 219
Query: 317 PVVLLPTE-VELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
LL E V+ G +V + A ++Y KY+ ++ P + VI ++R+ A
Sbjct: 220 ---LLENEGVKSSLPG--EVVKDVAFYDYEAKYI-DNKITMDIPAKLSEDVIATMRQYAE 273
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F +G AR D ++ T+ G I ++N + G Q S
Sbjct: 274 KAFHAIGGVGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMYPL 316
Query: 436 QASKVGFSHSNILRTIIGHACSRF 459
+G S+++++ ++ A F
Sbjct: 317 LWENMGISYTDLIEKLVLLAQETF 340
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 112/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVAMDKITTKRV---LASAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + + I + LT + KP+ G S G+++ ++L
Sbjct: 141 PQVPYVAVIEGENIDEKIAAVEANLTY-----PVFTKPSNMGSSVGISKSENQDELR--- 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
ALE L F K R++ +
Sbjct: 193 SALE---------------------------LAF-----------------KYDSRVLIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++ G SL P VK+ E K+ I + P +S +
Sbjct: 209 QGVNAREIEVGLLENEGVKSSL-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E +A+ G +R D F D GE+ + E+NT+PG T
Sbjct: 264 VIATMRQYAEKAFHAIGGVGLARCD-FFYTDKGEIFLNELNTMPGFT 309
>gi|302036135|ref|YP_003796457.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii]
gi|300604199|emb|CBK40531.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii]
Length = 332
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 160/395 (40%), Gaps = 84/395 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++G++ GG S+ER +SL + +V LVR Y +A AI S T
Sbjct: 16 KIGVLMGGQSSEREVSLKTGEAVYRS------LVRSGY-----DAVAIDVGPDLSKT--- 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
L E A V+I F +HG GEDG IQ LE +P+ G+G R
Sbjct: 62 --------------LQEQA------VEIGFLALHGPGGEDGAIQGFLETLGIPYTGSGVR 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
A K E++ QG I VP + +L+G L+ T KL VVVKP
Sbjct: 102 ASAIGMHKVVTKTELAAQG-IPVPRGTVVLRG---MAPSLNRVLSTCKLKL---PVVVKP 154
Query: 257 TRAGSSIGVTVAYGV---IDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
GS+IGVT+ ++L+ A D+ +VE F+ G E T +L G
Sbjct: 155 ASQGSTIGVTIVRKPSQWKEALRTA-----HRYDEEAMVEAFIP-GHEVTVSLLGGPDGV 208
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
V LP +V++ D +++ KY + Y P V I++
Sbjct: 209 ----VTGLP---------AVEIVAPDGFYDFSAKY-EKGRTQYLCPAPLSAAVTRQIKQF 254
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A +Q LG AR+D + T G +IN + GM +TS L
Sbjct: 255 AIRTYQALGCSGAARVD-----------------FRVTPKGKPFVLEINTVPGMTETSLL 297
Query: 434 FQQASKVGFSHSNILRTIIGHACSRFPNLASYNSV 468
A K G S+ + I+ A R + S+ +V
Sbjct: 298 PMAAGKAGLSYDALTERILQSALGR-AGVGSFRAV 331
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 116/287 (40%), Gaps = 61/287 (21%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F+A+HG GEDG +Q LE G+PYTG GV AS M KV T LA G+
Sbjct: 71 FLALHGPGGEDGAIQGFLETLGIPYTGSGVRASAIGMHKVVTK---TELAAQGI-----P 122
Query: 699 VRRKEDLLKTPIVDIWHEL-TSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V R +L+ + L T KL+ + VKPA G + GV
Sbjct: 123 VPRGTVVLRGMAPSLNRVLSTCKLKLP-VVVKPASQGSTIGVT----------------- 164
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
++ P+ E L ++ ++ + M +
Sbjct: 165 ---------------IVRKPSQWKEAL---------------RTAHRYDEEAMVEAFIPG 194
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
E+TV ++G + + +P+V + K++ G L P P S T + +
Sbjct: 195 HEVTVSLLGGPDGVVTGLPAVEIVAPDGFYDFSAKYEKGRTQYLCPAPLSAAVTRQIKQF 254
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
R AL G +R+D F G+ ++E+NTVPGMT +++L
Sbjct: 255 AIRTY---QALGCSGAARVD-FRVTPKGKPFVLEINTVPGMTETSLL 297
>gi|332672285|ref|YP_004455293.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484]
gi|332341323|gb|AEE47906.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484]
Length = 315
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 163/380 (42%), Gaps = 83/380 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG S ER +SL S R V + ++ + V + +D +L PA
Sbjct: 8 RVAVLAGGLSHERDVSLRSGRRVAEALRSVGVEVSVHDVDADL-------------VPAL 54
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D + D+V+P +HG GEDG +++V++ + +GTG R
Sbjct: 55 TDLR---------------------PDLVWPLLHGATGEDGSVRDVVQLLGLRLLGTGPR 93
Query: 199 ACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KV 252
A R A+ K A +++ G F+T+P L + EL V + + G +
Sbjct: 94 ASRVAWSKPIAKTVVARAGLATPEFVTLPQSLFR-------ELGAGRVLDAVVARLGLPL 146
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
VVKP+R GS++GVT+ D L +A + D ++E + G+E V+D G G
Sbjct: 147 VVKPSRGGSALGVTLVTDA-DDLPRAM-VDCFAYSDTALIERAVV-GTEVAVSVVDTGDG 203
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
PV L E+ D ++Y +Y P +V Y TP R V+ + E
Sbjct: 204 ----PVPLPAVEI-----------VTDGPYDYDARYNP-GRVEYFTPARLDAVMARRVGE 247
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A LGL +R D + +E GT F ++N+ GM +TS
Sbjct: 248 VAVAAHTALGLARLSRTD---------LVVDAE--------GTPWFLEVNVAPGMTETSL 290
Query: 433 LFQQASKVGFSHSNILRTII 452
Q A G + ++ R+++
Sbjct: 291 FPQAAEGAGHNLGDLYRSLV 310
>gi|238793959|ref|ZP_04637578.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
gi|238726726|gb|EEQ18261.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
Length = 368
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 152/357 (42%), Gaps = 44/357 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA+++++ I + V ID+ + ++ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQ-GEWHVNDASSYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAAN-------VDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + +AA+ +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALISLNHSNKNVALIPGQEQQQLIAADNATALAQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+G + DK A + G P L + N+ S +T KL
Sbjct: 123 ANIPFVGSGVVGSAVSMDKDIAKRLLRDAGLNIAPFITL--TRANKDNYSFEQMTAKL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ +KP GSS+GV+ V ++ + + + L D +V+VE +AI
Sbjct: 179 -GLPLFIKPANQGSSVGVS---KVRNAAEYQQAVTLAFDFDHKVLVE---------SAI- 224
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
VG +C VL G V V D ++Y KY+ P
Sbjct: 225 --VGREIEC--AVLGNDNPRASLCGEVVV--SDEFYSYDTKYINETGAQVVIPAVIDSAA 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ IR A F+ L AR+D + P +T + + T G FT+IN+
Sbjct: 279 SDHIRAVALAAFRTLECRGLARVDVFLTPENTVIINEINTLPG--------FTNINM 327
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 117/283 (41%), Gaps = 62/283 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK +A L + A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVVGSAVSMDKDIAKRLLRD--AGLNIAPFI 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R +D + ++T+KL L +KPA G S GV+++ A + Y +A+
Sbjct: 160 TLTRANKDNYS------FEQMTAKLGLP-LFIKPANQGSSVGVSKVRNAAE---YQQAVT 209
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+F H ++L S +
Sbjct: 210 L--------AFDFDH----------------------KVLVESAIVGR------------ 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI V+G SL V V S + S + K+ TG + P +++ + A D
Sbjct: 228 --EIECAVLGNDNPRASLCGEVVV--SDEFYSYDTKYINETGAQVVIP--AVIDSAASDH 281
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ L+ G +R+D F+ +N V+I E+NT+PG T
Sbjct: 282 IRAVALAAFRTLECRGLARVDVFLTPEN-TVIINEINTLPGFT 323
>gi|383806726|ref|ZP_09962287.1| D-alanine--D-alanine ligase [Candidatus Aquiluna sp. IMCC13023]
gi|383299156|gb|EIC91770.1| D-alanine--D-alanine ligase [Candidatus Aquiluna sp. IMCC13023]
Length = 314
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 151/362 (41%), Gaps = 75/362 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRV ++ GG S ER +SL S R V D A++ A V +
Sbjct: 4 LRVLVLAGGISHERDVSLKSGRRVAD---------------------ALTDAGVSTEI-- 40
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
E + G L +A D+V+ T+HG GEDG +Q +L+ + FVG+ S
Sbjct: 41 -----REPDGELVGHL------MATRPDVVWSTLHGAVGEDGSLQNLLQLAGIAFVGSDS 89
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
R A+DK A + +++QG T S L S EL+ V + G VVVKP
Sbjct: 90 AGARLAWDKPVAKVLVARQGIRTPESIALPKSSFR--ELNAESVLAMVGTELGFPVVVKP 147
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
++GS+ G V D AK ++ D+V++E F+ G+E V+D+G G
Sbjct: 148 VKSGSAQGCA---RVSDPKSFAKAMVDAFAYCDQVMIERFI-AGTELAVSVIDLGDG--- 200
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P+ L +V++ F Y +Y P Q Y+ P R V+ A
Sbjct: 201 -PIAL----------PAVEIVPDSGEFGYSERYTPG-QTNYYVPARLDGEVLAEAARIAV 248
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
LGL +R+D E G I F + N+ GM +TS LF
Sbjct: 249 AAHNSLGLTQLSRVD-----------------LIVDESGEIWFLEANVTPGMTETS-LFP 290
Query: 436 QA 437
QA
Sbjct: 291 QA 292
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 117/313 (37%), Gaps = 69/313 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V+ +HG +GEDG+LQ+LL+ G+ + G ++ DK VL +
Sbjct: 59 VWSTLHGAVGEDGSLQNLLQLAGIAFVGSDSAGARLAWDKPVAK----------VLVARQ 108
Query: 698 DVRRKED--LLKTPIVDIWHELTSKLQCKTL----CVKPARDGCSTGVARLCCAEDLTVY 751
+R E L K+ ++ E + L VKP + G + G AR+
Sbjct: 109 GIRTPESIALPKSSFRELNAESVLAMVGTELGFPVVVKPVKSGSAQGCARVS-------- 160
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
P SF++A + + F D+++ +R +
Sbjct: 161 -----------DPKSFAKA--------------MVDAFAYCDQVMI---------ERFI- 185
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
E+ V VI G +P+V + E++ G P + +
Sbjct: 186 ----AGTELAVSVI-DLGDGPIALPAVEIVPDSGEFGYSERYTPGQTNYYVP---ARLDG 237
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E L + + N+L L SR+D V+ ++GE+ +E N PGMT T L QA+
Sbjct: 238 EVLAEAARIAVAAHNSLGLTQLSRVDLIVD-ESGEIWFLEANVTPGMT-ETSLFPQAVLA 295
Query: 932 QPPMYPHQFFRKV 944
P + V
Sbjct: 296 TEATLPETYLALV 308
>gi|442609545|ref|ZP_21024282.1| D-alanine--D-alanine ligase [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441749017|emb|CCQ10344.1| D-alanine--D-alanine ligase [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 302
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 154/377 (40%), Gaps = 87/377 (23%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S +VL +Q ++A+A
Sbjct: 6 KVAVLLGGHSAEREVSLRSGNAVLKALQA-----------AGIDAFA------------- 41
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD + + L+ +LS+ NVD VF +HGR GEDG +Q LE +P+ G+G
Sbjct: 42 FDPQEKPLS----ALSQL------NVDRVFIALHGRGGEDGTVQGALEYLGLPYTGSGVL 91
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK S G T P ++ ++ F + GKV+VKP+
Sbjct: 92 GSALAMDKVRCKHLFSAAGLSTSPYEVVDANQP--------FDVEAIIERHGKVMVKPSH 143
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG++ A S I L+ D +V+VE ++ G EFT +L G D
Sbjct: 144 EGSSIGMSQA-----SNANELSIALQEAFKFDSQVLVERWIT-GREFTVAML----GSDV 193
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV+ + T ++ ++Y+ KY T YH P ++++ A
Sbjct: 194 LPVIEMTT--------------PNSFYDYQAKYQST-TTQYHCPAALSSGETSTLQALAK 238
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F +G + R+D + G ++N + GM + S +
Sbjct: 239 HAFDLVGASGWGRVDAM-----------------QDKEGHFYLLEVNTVPGMTEKSLVPM 281
Query: 436 QASKVGFSHSNILRTII 452
A VG + ++ I+
Sbjct: 282 AAKAVGLTFEQLVVRIL 298
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 119/300 (39%), Gaps = 77/300 (25%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-A 688
L++ N VFIA+HG GEDGT+Q LE G+PYTG GV+ S MDKV HL +
Sbjct: 52 LSQLNVDRVFIALHGRGGEDGTVQGALEYLGLPYTGSGVLGSALAMDKVRC----KHLFS 107
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
G+ T +V + H + VKP+ +G S G+++ A +L
Sbjct: 108 AAGLSTSPYEVVDANQPFDVEAIIERH--------GKVMVKPSHEGSSIGMSQASNANEL 159
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
++ AL+E F SQ +
Sbjct: 160 SI---ALQEAF------------------------------------KFDSQVLVE---- 176
Query: 809 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
RW+ E TV ++G ++P + + + K+Q T P
Sbjct: 177 -------RWITGREFTVAMLGS-----DVLPVIEMTTPNSFYDYQAKYQSTTTQYHCPAA 224
Query: 866 ASIMSTEALDK-CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
S T L K +L+ + G+ R+DA + G ++EVNTVPGMT +++
Sbjct: 225 LSSGETSTLQALAKHAFDLVGAS----GWGRVDAMQD-KEGHFYLLEVNTVPGMTEKSLV 279
>gi|418253422|ref|ZP_12878447.1| D-alanine-D-alanine ligase A [Shigella flexneri 6603-63]
gi|397901296|gb|EJL17642.1| D-alanine-D-alanine ligase A [Shigella flexneri 6603-63]
Length = 364
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 157/393 (39%), Gaps = 55/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ N
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVRDASNYLLNADD 63
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQEVLEKY 188
L A + EH + VD++FP +HG GEDG +Q +L
Sbjct: 64 PAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVA 123
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+PFVG+ A DK D + + + + + F+ + N +S V +KL
Sbjct: 124 NLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVESKL--- 178
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVL 307
+ VKP GSS+GV+ V + A + L D +V+VE ++ G E VL
Sbjct: 179 GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVLVEQGIK-GREIECAVL 234
Query: 308 --DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
D C +VL + Y KY+ P
Sbjct: 235 GNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPAAIAPE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ + IR A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNISMYP 329
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +++++ +I A R
Sbjct: 330 KLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVLVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|300769676|ref|ZP_07079559.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|300492719|gb|EFK27904.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
Length = 374
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 169/401 (42%), Gaps = 70/401 (17%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
M K + + VG++ GG S+E +S SA ++ D + + + + I +N +S
Sbjct: 1 MNKIMETQKKIHVGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKN--GIVLS 58
Query: 128 SA---QVYSNTPADFDFKLE----SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
A +V+ P D E ++ + LA ++DI +P +HG GEDG
Sbjct: 59 DAATRRVFDGEPEDQVVAEEMPKLDMSDPLAPIKNLT--LAKDIDIFYPVVHGNLGEDGT 116
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
+Q + + P+VG+G A +FDK D + ++ I +++ E N +++ +
Sbjct: 117 LQGLFKLLKKPYVGSGVLASAASFDK-DITKQILTHHHIQNTKYVVVTPE-NRDQMTYAY 174
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAY-------GVIDSLKKAKGIIL-EGIDDRVVV 292
+ + + +KP GSSIG+ A G+ D+ K I++ E ID+ V
Sbjct: 175 LQAHV---GDHLFIKPANQGSSIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREV 231
Query: 293 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
E + G A L G++DV + D ++Y K++
Sbjct: 232 ECSILGNENPKASKL-----------------------GAIDVPKTDTFYDYNNKFVDAS 268
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
V + P P + I++ + F+ LGL AR+D FL S G
Sbjct: 269 GVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVD--FLVSED----------GEPY 316
Query: 413 WGTIL----FTDINL------ISGMEQTSFLFQQASKVGFS 443
G I FT+I+L +SG+ T+ L Q ++GF
Sbjct: 317 LGEINTLPGFTNISLYPKLWEVSGISYTA-LIDQLIQLGFD 356
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 117/289 (40%), Gaps = 73/289 (25%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+ VHG +GEDGTLQ L + PY G GV+AS DK T L H
Sbjct: 104 YPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTH----------HH 153
Query: 699 VRRKEDLLKTPIVDIWHELT-SKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKA 754
++ + ++ TP + ++T + LQ L +KPA G S G+ + AE+ Y+
Sbjct: 154 IQNTKYVVVTP--ENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHK---AENEQEYLDG 208
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L + + D + +S + N
Sbjct: 209 LADAF-------------------------------KYDYKILVEESID----------N 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMST 871
R VE + ++G S + ++ V ++ KF +G+ P PA
Sbjct: 228 PREVECS--ILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVELPAD---- 281
Query: 872 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L K Q++ L A AL L+G +R+D V+ D GE + E+NT+PG T
Sbjct: 282 --LTKRIQQMSLDAFKALGLKGMARVDFLVSED-GEPYLGEINTLPGFT 327
>gi|21674167|ref|NP_662232.1| D-alanyl-alanine synthetase A [Chlorobium tepidum TLS]
gi|39930903|sp|Q8KCR8.1|DDL_CHLTE RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|21647328|gb|AAM72574.1| D-alanine--D-alanine ligase A [Chlorobium tepidum TLS]
Length = 364
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 155/380 (40%), Gaps = 59/380 (15%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--------- 130
V L GG SAE IS+ SARS+ I + + YIDR+ +A +Q
Sbjct: 6 VALFFGGKSAEHEISIISARSIAAQIDRNRYELSPLYIDRDGKWHASECSQQVLDTDIAA 65
Query: 131 -VYSNTPADFDFKLESL-AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
+ S TP +L+ L A G +F L N D+ F +HG +GEDG +Q L+ +
Sbjct: 66 LLRSGTPESAGKRLDELTAAAAGECFDFGSFLK-NTDVAFIALHGSYGEDGKLQGCLDTF 124
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF-VTNKLDP 247
+P+ G G A A DK L G + + L +T + D
Sbjct: 125 GIPYTGCGLTASALAMDKVLTKLCAMNAGIAVAEFMTITSCAYMANPLETIVEITKRFD- 183
Query: 248 NSGKVVVKPTRAGSSIGVTV---AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+ VKP GSS+G++ A + +L+ A G+D + +VE + G E
Sbjct: 184 --WPLFVKPASLGSSVGISKVRNAEELAAALENAC-----GLDSKALVEAAIS-GREIEV 235
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL + P+ P E+ GS ++Y KY+ + P P
Sbjct: 236 AVLG-----NSDPLASEPGEI---IPGS-------DFYSYEDKYI-KNEAKIVIPADLPE 279
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V +R+ A +F+ LG AR+D +F+ + T+ ++ +IN I
Sbjct: 280 GVAEEVRKAALTVFKALGCEGMARVD-FFVENGTN---------------RVILNEINTI 323
Query: 425 SGMEQTSF--LFQQASKVGF 442
G S + AS +GF
Sbjct: 324 PGFTDISMYPMMMAASGIGF 343
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL-ALNH-LADL 690
+N FIA+HG GEDG LQ L+ G+PYTG G+ AS MDKV T L A+N +A
Sbjct: 98 KNTDVAFIALHGSYGEDGKLQGCLDTFGIPYTGCGLTASALAMDKVLTKLCAMNAGIAVA 157
Query: 691 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
+TI + P+ I E+T + L VKPA G S G++++ AE+L
Sbjct: 158 EFMTITSCA-----YMANPLETIV-EITKRFDWP-LFVKPASLGSSVGISKVRNAEELAA 210
Query: 751 YVK 753
++
Sbjct: 211 ALE 213
>gi|430809418|ref|ZP_19436533.1| D-alanine--D-alanine ligase [Cupriavidus sp. HMR-1]
gi|429498105|gb|EKZ96620.1| D-alanine--D-alanine ligase [Cupriavidus sp. HMR-1]
Length = 327
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 157/380 (41%), Gaps = 84/380 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL ++ R ++A+
Sbjct: 16 KVGVLLGGKSAEREISLLSGNGVLAALK-----------SRGVDAHP------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G +SE A AA D VF +HGR+GEDG +Q +LE+ +P+ G+G
Sbjct: 52 FD-------PGLQPISELA---AAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK A+ + +T P F + + + + V + P ++VKP R
Sbjct: 102 ASALAMDK-QATKRLWMTHGLTTPRFAMLYANTD----FDAVVADLGLP----LIVKPAR 152
Query: 259 AGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+T A + + +KA G+D V+ E F++ G+E T ++ G +
Sbjct: 153 EGSSIGLTKVVAADQMRAAFEKAA-----GLDADVIAETFID-GAELTCPIVGEGPTAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + ++ ++Y+ KY T Y P P + +R A
Sbjct: 207 LPV--------------IKIVAPESNYDYQNKYF-TDDTQYLCPSTLPDALEREVRALAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ LG +AR D T G ++N GM S +
Sbjct: 252 EAFRVLGCRGWARADVML-----------------TRDGKPYLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSNILRTIIGHA 455
A G S+ + + ++ A
Sbjct: 295 AARAQGISYEDFVMQVLAAA 314
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
D P + +LA VFIA+HG GEDGT+Q LLE G+PYTG GV+AS M
Sbjct: 48 DAHPFDPGLQPISELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYTGSGVLASALAM 107
Query: 676 DKVATS-LALNH---LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
DK AT L + H +L N D L P++ VKPA
Sbjct: 108 DKQATKRLWMTHGLTTPRFAMLYANTDFDAVVADLGLPLI----------------VKPA 151
Query: 732 RDGCSTGVARLCCAEDL 748
R+G S G+ ++ A+ +
Sbjct: 152 REGSSIGLTKVVAADQM 168
>gi|291618995|ref|YP_003521737.1| DdlA [Pantoea ananatis LMG 20103]
gi|291154025|gb|ADD78609.1| DdlA [Pantoea ananatis LMG 20103]
Length = 365
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 98/413 (23%), Positives = 168/413 (40%), Gaps = 79/413 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVG++ GG S+E +SL SA++++D I V ID+ Q + N ++
Sbjct: 5 RVGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQ--------GQWHLNDASN 56
Query: 139 FDFKLESLAQGFGSLSEFAEHLA-------------------ANVDIVFPTIHGRFGEDG 179
F E+ +L+ A+ +A + +D++FP +HG GEDG
Sbjct: 57 FLLNAEN--PSLIALNRTAKQVALIPGEPQNQVIDRKDAHPLSQLDVIFPVVHGTQGEDG 114
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
+Q +L ++PFVG+ + DK D + + + + V +L V +++++N
Sbjct: 115 SLQGLLRMASLPFVGSDVLGSAVSMDK-DVTKRLLRDAGLKVAPWL----SVTQAQMNNL 169
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFL 296
+ + + +KP GSS+G VT A +L+ A D++V++E +
Sbjct: 170 DIEAVIARFGLPLFIKPANQGSSVGVSKVTTAAAFRAALELAF-----RFDNKVLIEKGI 224
Query: 297 EGGSEFTAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
+ G E VL D C VV+ DA ++Y KY+
Sbjct: 225 K-GREIECAVLGNDYPEASPCGEVVV-----------------SDAFYSYDTKYISETGA 266
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P P V +IRE A F L AR+D ++ TE G
Sbjct: 267 HTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDVFY-----------------TEDG 309
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
I+ ++N + G S + G S+ +++ +I A R AS +
Sbjct: 310 EIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELALERHQQNASLKT 362
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 111/470 (23%), Positives = 179/470 (38%), Gaps = 130/470 (27%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
+ V ++FGG +SE +VSL S N+ + A + LL ID N D+
Sbjct: 4 QRVGIVFGGKSSEHEVSLQSAKNI---VDAIDKTRFEVVLLG--IDKQGQWHLN----DA 54
Query: 552 SSRVVWSLPYSLV-LRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFT 610
S+ ++ + SL+ L T ++V A I EP +NQV+
Sbjct: 55 SNFLLNAENPSLIALNRTAKQV--ALIPG-EP---------QNQVI-------------- 88
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
D D P+ +F VHG GEDG+LQ LL +P+ G V+
Sbjct: 89 --DRKDAHPLSQ------------LDVIFPVVHGTQGEDGSLQGLLRMASLPFVGSDVLG 134
Query: 671 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----- 725
S MDK + K + R L P + + + L +
Sbjct: 135 SAVSMDK----------------DVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARF 178
Query: 726 ---LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782
L +KPA G S GV+++ A + ALE
Sbjct: 179 GLPLFIKPANQGSSVGVSKVTTA---AAFRAALE-------------------------- 209
Query: 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE 842
L F + ++++ + + EI V+G S V V +
Sbjct: 210 -LAF-----------------RFDNKVLIEKGIKGREIECAVLGNDYPEASPCGEVVVSD 251
Query: 843 SGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVN 901
+ S + K+ TG + T PA I + A+D+ + + L A AL G +R+D F
Sbjct: 252 A--FYSYDTKYISETGAH-TVIPADIPA--AVDEAIREVALTAFTALSCFGLARVDVFYT 306
Query: 902 VDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D GE+++ EVNT+PG T + ++ L + + ++++L ER
Sbjct: 307 ED-GEIIVNEVNTLPGFT--NISMYPKLWQAAGLSYQDLITRLIELALER 353
>gi|392949321|ref|ZP_10314904.1| D-alanine--D-alanine ligase [Lactobacillus pentosus KCA1]
gi|334882075|emb|CCB83029.1| D-alanine--D-alanine ligase [Lactobacillus pentosus MP-10]
gi|339639276|emb|CCC18514.1| D-alanine--D-alanine ligase [Lactobacillus pentosus IG1]
gi|392435434|gb|EIW13375.1| D-alanine--D-alanine ligase [Lactobacillus pentosus KCA1]
Length = 370
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 91/399 (22%), Positives = 167/399 (41%), Gaps = 64/399 (16%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA---QVY 132
+ + VG++ GG S+E +S SA ++ D + + V + + ++ +S A +V+
Sbjct: 5 KKIHVGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYDVDLFLLTKD--GIVLSDAATRRVF 62
Query: 133 SNTPADFDFKLE----SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
P D E ++ + A LA ++DI +P +HG GEDG +Q + +
Sbjct: 63 DGEPEDQVVAEEMPKLDMSDPLAPIKNLA--LAKDIDIFYPVVHGNLGEDGTLQGLFKLL 120
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
P+VG+G A +FDK D + ++ I +++ E N +++ ++ +
Sbjct: 121 KKPYVGSGVLASAASFDK-DITKQILTHHHIQNTKYVVVTPE-NREQMTYAYLQAHV--- 175
Query: 249 SGKVVVKPTRAGSSIGVTVAY-------GVIDSLKKAKGIIL-EGIDDRVVVELFLEGGS 300
+ +KP GSS+G+ A G+ D+ K I++ E ID+ VE + G
Sbjct: 176 GDHLFIKPANQGSSVGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREVECSILGNE 235
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
+ A L G++DV + D ++Y K++ V + P
Sbjct: 236 DPKASKL-----------------------GAIDVPKTDTFYDYNNKFVDASGVTFELPV 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
P + I++ + F+ LGL AR+D FL S E G +
Sbjct: 273 ELPADLTQRIQQMSLDAFKALGLKGMARVD--FLVS---------------EDGEPYLGE 315
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
IN + G S + G S+++++ +I F
Sbjct: 316 INTLPGFTNISLYPKLWEVSGISYTDLIDQLIQLGFDEF 354
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 128/321 (39%), Gaps = 83/321 (25%)
Query: 614 IADELP---MRHSINEWIKLAKENQATVFI-AVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
+A+E+P M + LA +F VHG +GEDGTLQ L + PY G GV+
Sbjct: 71 VAEEMPKLDMSDPLAPIKNLALAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVL 130
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT-SKLQCKT--- 725
AS DK T L H ++ + ++ TP + ++T + LQ
Sbjct: 131 ASAASFDKDITKQILTH----------HHIQNTKYVVVTP--ENREQMTYAYLQAHVGDH 178
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
L +KPA G S G+ + AE+ Y+ L +
Sbjct: 179 LFIKPANQGSSVGIHK---AENEQEYLDGLADAF-------------------------- 209
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
+ D + +S + N R VE + ++G S + ++ V ++
Sbjct: 210 -----KYDYKILVEESID----------NPREVECS--ILGNEDPKASKLGAIDVPKTDT 252
Query: 846 ILSLEEKFQGGTGINLTPP---PASIMSTEALDKCKQRIELIA----NALQLEGFSRIDA 898
KF +G+ P PA + QRI+ ++ AL L+G +R+D
Sbjct: 253 FYDYNNKFVDASGVTFELPVELPADLT---------QRIQQMSLDAFKALGLKGMARVDF 303
Query: 899 FVNVDNGEVLIIEVNTVPGMT 919
V+ D GE + E+NT+PG T
Sbjct: 304 LVSED-GEPYLGEINTLPGFT 323
>gi|270260868|ref|ZP_06189141.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13]
gi|270044352|gb|EFA17443.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13]
Length = 367
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 104/402 (25%), Positives = 164/402 (40%), Gaps = 55/402 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + I+ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GQWHINDASNYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAAN-------VDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + + A+ +D+VFP +HG GEDG +Q +L
Sbjct: 63 NPALIALNRSNKNVALIPGQEKQQLIEASSAGALGQLDVVFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK + G P L + N + + ++L
Sbjct: 123 ANMPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTL--TRTNRGK----YGFDQLSE 176
Query: 248 NSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
G + +KP GSS+GV+ V D + L D +V+VE +AI
Sbjct: 177 RLGLPLFIKPANQGSSVGVS---KVQDRAGFDAALALAFSFDHKVLVE---------SAI 224
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VG +C VL E + G + + DA ++Y KY+ Q P
Sbjct: 225 ---VGREIEC--AVLGNDEPQASLCGEIVL--SDAFYSYDTKYINEQGAKVVVPAEIAPE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V + IR+ A F+ L AR+D + P + ++ +IN +
Sbjct: 278 VSDKIRDVALKAFRALECFGLARVDVFLTPDN-----------------NVVINEINTLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
G S + + G S+S ++ +I A R + NS
Sbjct: 321 GFTNISMYPKLWAASGVSYSELITRLIELALERHQQDRALNS 362
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 115/285 (40%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
VF VHG +GEDG+LQ LL +P+ G GV+ S MDK T L LA +T
Sbjct: 101 VVFPIVHGTLGEDGSLQGLLRMANMPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R K + +L+ +L L +KPA G S GV+++ +D + A
Sbjct: 161 LTRTNRGKYG---------FDQLSERLGL-PLFIKPANQGSSVGVSKV---QDRAGFDAA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L +FS H ++L S +
Sbjct: 208 LAL--------AFSFDH----------------------KVLVESAIVGR---------- 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G SL + + ++ S + K+ G + P ++ E
Sbjct: 228 ----EIECAVLGNDEPQASLCGEIVLSDA--FYSYDTKYINEQGAKVVVPAE--IAPEVS 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 280 DKIRDVALKAFRALECFGLARVDVFLTPDN-NVVINEINTLPGFT 323
>gi|257069004|ref|YP_003155259.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810]
gi|256559822|gb|ACU85669.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810]
Length = 371
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 165/402 (41%), Gaps = 63/402 (15%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDRNLNAYAISSAQ 130
V L+ GG S E GIS +A +L I + V R ++ + + + + +
Sbjct: 5 VALLFGGRSGEHGISCVTAGGILAAIDRERFEVIALGITREGRWLHVSDDPSDWTLVDGR 64
Query: 131 VYSNTPADFDFKLESLAQGFG---SLSEFAEHLA---ANVDIVFPTIHGRFGEDGGIQEV 184
P+ + L G +L + L A+VD+ +P +HG +GEDG +Q +
Sbjct: 65 APEIDPSGNEVLLPHSRHRPGERITLRTVRDGLIQDLADVDVFWPLLHGVYGEDGTVQGM 124
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
LE ++P+VG+G A A DK L + G P ++ E +E S+ T
Sbjct: 125 LEMLDIPYVGSGVLASAAAMDKAATKLVLRAAGLDCAPGIVVH--EDRWAEESHRVATYL 182
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVID---SLKKA-----KGIILEGIDDRVVVELFL 296
+ VKP RAGSS+GVT ++K+A K ++ EG+D R V L
Sbjct: 183 RRNHPLPWFVKPARAGSSLGVTRVTDPAQLEAAMKEAFAEDPKVLVEEGLDAREVECGVL 242
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
+G P LP G V V ++Y KY V+
Sbjct: 243 QGADR-------------QEPSTTLP--------GEVKVGRDLEFYDYEAKYFGKGTVSI 281
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P P V+ +RE + F+ LGL AR+D +F +S+ + +
Sbjct: 282 DVPAALPDAVLEEVRETSCRAFRALGLEGLARVD---------MFVTSDHR--------V 324
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
L ++N + G S +G S+++++ +I A SR
Sbjct: 325 LINEVNTMPGFTPYSMFPVLWENMGLSYADLIAELIEQARSR 366
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 117/289 (40%), Gaps = 64/289 (22%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LTINKD 698
+HG GEDGT+Q +LE +PY G GV+AS MDK AT L L A L + +++D
Sbjct: 111 LHGVYGEDGTVQGMLEMLDIPYVGSGVLASAAAMDKAATKLVLR-AAGLDCAPGIVVHED 169
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+E H + + L+ VKPAR G S GV R+ L +K
Sbjct: 170 RWAEES----------HRVATYLRRNHPLPWFVKPARAGSSLGVTRVTDPAQLEAAMK-- 217
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
E F E ++L + + + +G
Sbjct: 218 -------------------------------EAFAEDPKVLVEEGLDAREVECGVLQGAD 246
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
R T +L V V + E K+ G +++ P A + L+
Sbjct: 247 RQEPST-----------TLPGEVKVGRDLEFYDYEAKYFGKGTVSIDVPAA--LPDAVLE 293
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ ++ AL LEG +R+D FV D+ VLI EVNT+PG TP ++
Sbjct: 294 EVRETSCRAFRALGLEGLARVDMFVTSDH-RVLINEVNTMPGFTPYSMF 341
>gi|359779025|ref|ZP_09282268.1| D-alanine--D-alanine ligase [Arthrobacter globiformis NBRC 12137]
gi|359303633|dbj|GAB16097.1| D-alanine--D-alanine ligase [Arthrobacter globiformis NBRC 12137]
Length = 381
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 166/400 (41%), Gaps = 61/400 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------------LNAY 124
RV ++ GG S+E +S +A VL I D V I ++ L+A
Sbjct: 18 RVAVLFGGRSSEHAVSCVTAAGVLGAIDRDKYDVVPIGIVKSGQWVLASGDTAQWSLSAT 77
Query: 125 AIS----SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
++ SAQ S T + +L A +E + L VD+VFP +HG FGEDG
Sbjct: 78 SLPEVPPSAQTVSLTEIGGEHQLIVTAP-----NEVPQELG-TVDVVFPLLHGPFGEDGT 131
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE + +VG G A DK+ + G P + + S
Sbjct: 132 IQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFEAAGLKVGPYIAVTDRQWRNDPES--- 188
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEG 298
V ++D V VKP RAGSS+G++ +DSL I D ++V+E +
Sbjct: 189 VRKQVDLLGFPVFVKPARAGSSMGIS----KVDSLDGLDAAIEAAREHDPKLVIEAGIV- 243
Query: 299 GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 358
G E VL+ G G D P LP E+ SV E + ++++ KY+ A
Sbjct: 244 GREIECAVLE-GRGGDA-PRTSLPGEI------SVAAGEHE-FYDFQAKYV-DDAAALSC 293
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P P I +RE A+ F +G +R+D ++ P G ++
Sbjct: 294 PADMPEEAIARVRELAAAAFDSVGAEGLSRVDFFYTPD-----------------GDLII 336
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+IN + G S Q + G S+ ++ +I A +R
Sbjct: 337 NEINTMPGFTPKSMYPQMWAATGLSYPELIDELIHLALTR 376
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-------VATSLALN---HL 687
VF +HG GEDGT+Q LLE Y G GV+AS MDK A L + +
Sbjct: 118 VFPLLHGPFGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFEAAGLKVGPYIAV 177
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D + VR++ DLL P+ VKPAR G S G++++ +
Sbjct: 178 TDRQWRNDPESVRKQVDLLGFPVF----------------VKPARAGSSMGISKVDSLDG 221
Query: 748 LTVYVKALEE 757
L ++A E
Sbjct: 222 LDAAIEAARE 231
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
M EA+ + ++ +++ EG SR+D F D G+++I E+NT+PG TP ++
Sbjct: 297 MPEEAIARVRELAAAAFDSVGAEGLSRVDFFYTPD-GDLIINEINTMPGFTPKSM 350
>gi|148546760|ref|YP_001266862.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
gi|148510818|gb|ABQ77678.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
Length = 352
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 151/395 (38%), Gaps = 72/395 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ L+ GG S+E ++L SA ++ + V C IDR N Y P F
Sbjct: 6 IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWR-------YQGEPCQF 58
Query: 140 DFKLE------SLAQGFGSLSEFAEH---LAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
++ S+ G SLS + + +D++FP +HGR+GEDG IQ + +
Sbjct: 59 PGAVDRSAPLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGL 118
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP--- 247
P VG+G A DK + G + P W N + P
Sbjct: 119 PCVGSGVLGSAMAMDKDVTKRMVQSAGLVVGP----------------WLALNSMRPWEE 162
Query: 248 -----NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
S + VKP +GSSIGV+ ++ E D +V+VE + G E
Sbjct: 163 LVECLGSSTLFVKPATSGSSIGVSRVSNALEYAAAFAIAARE--DTKVLVEAAV-CGREI 219
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL++ G V G + +E A ++Y+ KY P
Sbjct: 220 ECGVLELEEGLMASVV------------GEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLL 267
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P ++ I+ + F+ L L +AR+D +FL TE G I+ +IN
Sbjct: 268 PPDIVARIQALSVQAFRCLELKGYARVD-FFL----------------TEEGEIILNEIN 310
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
+ G S + G+ ++ ++ + S
Sbjct: 311 TLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLS 345
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F A+HG GEDGT+Q L G+P G GV+ S MDK + K
Sbjct: 95 LFPALHGRWGEDGTIQGLAAMCGLPCVGSGVLGSAMAMDK----------------DVTK 138
Query: 698 DVRRKEDLLKTPIVDI-----WHELTSKLQCKTLCVKPARDGCSTGVARL 742
+ + L+ P + + W EL L TL VKPA G S GV+R+
Sbjct: 139 RMVQSAGLVVGPWLALNSMRPWEELVECLGSSTLFVKPATSGSSIGVSRV 188
>gi|422759298|ref|ZP_16813060.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412133|gb|EFY03041.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 348
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 167/388 (43%), Gaps = 53/388 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + Q +S PA +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQ---FIKTQEFSEKPAATER 64
Query: 142 KLESLAQGFGSL---SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + S+ E A +VFP +HG GEDG IQ LE +P+VGT
Sbjct: 65 LMTNSTIQYEQQIKPSDIYEEDA----VVFPLLHGPMGEDGSIQGFLEVLRMPYVGTNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G V + + G ++ +T L + + VKP
Sbjct: 121 SSSVAMDKITTKRVLESAGIPQVAYTVYIDGQDLEAC------LTETLATLAFPIFVKPA 174
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A + LK+A + L D RV++E A ++VG
Sbjct: 175 NMGSSVGISKA-QTKEELKEAIQLAL-TYDSRVLIE------QGVVAREIEVG------- 219
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
+L TEV+ G V V++ D ++Y+ KY+ ++ P + +R A
Sbjct: 220 -LLGNTEVKSTLPGEV-VKDVD-FYDYKAKYIDN-KITMAIPAEINQDTMTKMRTYAESA 275
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ LG C +R D +FL ++ G I ++N + G Q S
Sbjct: 276 FKALGGCGLSRCD-FFL----------------SQDGQIYLNELNTMPGFTQWSMYPLLW 318
Query: 438 SKVGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 319 ENMGLAYSDLIEELVTLAQEMFDQRESH 346
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 63/288 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L V
Sbjct: 84 EEDAVVFPLLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGIPQV 143
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
T+ D + E L + + + VKPA G S G+++ E+L
Sbjct: 144 AYTVYIDGQDLEACLTETLATLAF---------PIFVKPANMGSSVGISKAQTKEELK-- 192
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
E L + +S +LI + V
Sbjct: 193 ----EAIQLALTYDS---------------RVLIEQGVV--------------------- 212
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
+R +E VG++G + S +P VK+ D + K+ I + P ++
Sbjct: 213 ---AREIE--VGLLGNT-EVKSTLPGEVVKDV-DFYDYKAKYIDNK-ITMAIPAE--INQ 262
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + K + E AL G SR D F++ D G++ + E+NT+PG T
Sbjct: 263 DTMTKMRTYAESAFKALGGCGLSRCDFFLSQD-GQIYLNELNTMPGFT 309
>gi|444352903|ref|YP_007389047.1| D-alanine--D-alanine ligase (EC 6.3.2.4) [Enterobacter aerogenes
EA1509E]
gi|443903733|emb|CCG31507.1| D-alanine--D-alanine ligase (EC 6.3.2.4) [Enterobacter aerogenes
EA1509E]
Length = 365
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 168/397 (42%), Gaps = 63/397 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GLWHINDASNYLLNPQ 62
Query: 138 D-FDFKLE----SLAQGFGS------LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
D L +LAQ G ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSDVTLAQIPGRDAHQLINADSGQPLAA-IDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK D + + + +++ F+ + N + S V
Sbjct: 122 MANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRQQFSFADVKA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + L +A + E D +VVVE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVKSEEEYL-QAVALAFE-FDHKVVVEQGIK-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL D C +VL + Y KY+ + P
Sbjct: 231 CAVLGNDYPQASTCGEIVL-----------------NSEFYAYDTKYIDDKGAQVVVPAA 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR+ A +Q LG AR+D + TE ++ +I
Sbjct: 274 IAPEINDKIRDIAVRAYQTLGCSGMARVDVFL-----------------TEDNEVVINEI 316
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
N + G S + G +++++ +I A R
Sbjct: 317 NTLPGFTNISMYPKLWQASGLDYTSLISRLIELALER 353
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 115/285 (40%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L L+ +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R++ + ++ +KL L VKPA G S GV++ VK+
Sbjct: 161 LTRANRQQFS---------FADVKAKLGL-PLFVKPANQGSSVGVSK----------VKS 200
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
EE L + L F E D + Q KG
Sbjct: 201 EEEYLQAVA--------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDYPQASTCGEIVL--NSEFYAYDTKYIDDKGAQVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 280 DKIRDIAVRAYQTLGCSGMARVDVFLTEDN-EVVINEINTLPGFT 323
>gi|435854475|ref|YP_007315794.1| D-alanine--D-alanine ligase [Halobacteroides halobius DSM 5150]
gi|433670886|gb|AGB41701.1| D-alanine--D-alanine ligase [Halobacteroides halobius DSM 5150]
Length = 314
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 151/335 (45%), Gaps = 74/335 (22%)
Query: 599 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 658
++ LKK GF D P + + L+ E FIA+HG GEDGT+Q LLE
Sbjct: 28 ILAALKKQ----GFQTIDLDPANDDL--YQALSAEKIDVAFIALHGRFGEDGTIQGLLEL 81
Query: 659 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN---KDVRRKEDLLKTPIVDIWH 715
+G+PYTG GV+AS MDKV + + I+ KD + +++ LK+ DI
Sbjct: 82 KGIPYTGSGVLASSLAMDKVTSKRLFKQIEVTTPQFISVSKKDFKEEDEQLKS---DIRK 138
Query: 716 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIE 775
EL KL + +KPA +G S G L E+ EE L+ N+F
Sbjct: 139 EL--KL---PVVIKPALEGSSIG---LSIVEE--------EEKLIDSIENAFKYDR---- 178
Query: 776 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835
E+LI E G EITVG++G M ++
Sbjct: 179 ------EVLIEE----------------------YIPGR----EITVGLLGDEDPM--VL 204
Query: 836 PSVTVKESGDILSLEEKF-QGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGF 893
P + + + E K+ +G T ++ PA++ E + Q++ L A+ L+ G
Sbjct: 205 PIIEIMPQEGVYDFEAKYTKGMTKFDV---PANL--NEQVYNQAQQLALQAHQVLKCSGV 259
Query: 894 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
SR+D V G+ ++EVNT+PGMT +++L A
Sbjct: 260 SRVDLRVT-PQGKPYVLEVNTIPGMTETSLLPQAA 293
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 162/400 (40%), Gaps = 89/400 (22%)
Query: 62 VLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNL 121
+LED+T+A +I GG S ER +SL + +++L
Sbjct: 1 MLEDKTIA------------VIRGGKSKEREVSLKTGKAIL------------------- 29
Query: 122 NAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGI 181
A Q PA+ D + +LS A +D+ F +HGRFGEDG I
Sbjct: 30 AALKKQGFQTIDLDPANDDL--------YQALS------AEKIDVAFIALHGRFGEDGTI 75
Query: 182 QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
Q +LE +P+ G+G A A DK S + KQ +T P F + S+ + E
Sbjct: 76 QGLLELKGIPYTGSGVLASSLAMDKV-TSKRLFKQIEVTTPQF-ISVSKKDFKEEDEQLK 133
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFLEG 298
++ VV+KP GSSIG+++ +IDS++ A D V++E ++
Sbjct: 134 SDIRKELKLPVVIKPALEGSSIGLSIVEEEEKLIDSIENAF-----KYDREVLIEEYIP- 187
Query: 299 GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 358
G E T VG D P+V LP +++ ++ ++++ KY +
Sbjct: 188 GREIT-----VGLLGDEDPMV-LPI---------IEIMPQEGVYDFEAKY-TKGMTKFDV 231
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P V N ++ A Q L +R+D P G
Sbjct: 232 PANLNEQVYNQAQQLALQAHQVLKCSGVSRVDLRVTP-----------------QGKPYV 274
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++N I GM +TS L Q A+ +G ++ I+ A +
Sbjct: 275 LEVNTIPGMTETSLLPQAAAAIGIDFQELVVRILKLALNE 314
>gi|420257433|ref|ZP_14760191.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404515082|gb|EKA28859.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 366
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 166/392 (42%), Gaps = 53/392 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GKWHVNDASNYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLA-------ANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + +A A +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+G + DK D + + + + + F+ + N+ VT KL
Sbjct: 123 ANIPFVGSGVVGSAVSMDK-DITKRLLRDAGLNIAPFITL-TRANKDNYRFEQVTAKLGL 180
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ V ++ + + + L D +V+VE +AI
Sbjct: 181 ---PLFVKPANQGSSVGVS---KVRNAYEYEQAVALAFDFDHKVLVE---------SAI- 224
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
VG +C V+ + G V + D ++Y KY+ P V
Sbjct: 225 --VGREIEC--AVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVIIPASIDSAV 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
++IR A F+ L AR+D VF +++ TI+ +IN + G
Sbjct: 279 SDNIRAVALAAFRALECRGMARVD---------VFLTADN--------TIIINEINTLPG 321
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G + ++ T+I A R
Sbjct: 322 FTNISMYPKLWRATGVGSTELITTLIELALER 353
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 123/288 (42%), Gaps = 72/288 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 693
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L ++A L
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITL 161
Query: 694 T-INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
T NKD R + ++T+KL L VKPA G S GV+++ A + Y
Sbjct: 162 TRANKDNYR------------FEQVTAKLGLP-LFVKPANQGSSVGVSKVRNAYE---YE 205
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+A+ +F H ++L+ V
Sbjct: 206 QAVAL--------AFDFDH----------KVLVESAIV---------------------- 225
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
R +E V+G SL V + S + S + K+ TG + PASI S
Sbjct: 226 --GREIE--CAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVI-IPASIDS-- 276
Query: 873 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
A+ + + L A AL+ G +R+D F+ DN ++I E+NT+PG T
Sbjct: 277 AVSDNIRAVALAAFRALECRGMARVDVFLTADN-TIIINEINTLPGFT 323
>gi|238787931|ref|ZP_04631727.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
gi|238723879|gb|EEQ15523.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
Length = 359
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 142/341 (41%), Gaps = 36/341 (10%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SNTPAD 138
++ GG SAE +SL SA++++D I + V ID+ + ++ A Y + PA
Sbjct: 1 MVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GQWHVNDASSYLLNAENPAL 59
Query: 139 FDFKLE----SLAQGFGSLSEFAEHLA---ANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
+L G S A A +D++FP +HG GEDG +Q +L N+P
Sbjct: 60 ISLNHSNRNVALIPGQASQQLITTDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANIP 119
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
FVG+G + DK + G P L + N+ S VT KL
Sbjct: 120 FVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITL--TRANQGHYSFEQVTAKL---GLP 174
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ +KP GSS+GV+ V + + + + L D +V+VE + G A++
Sbjct: 175 LFIKPANQGSSVGVS---KVRNEAEYQRAVALAFDFDHKVLVESAIVGREIECAVM---- 227
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D HP L EV + D ++Y KY+ P V + I
Sbjct: 228 -GND-HPQASLCGEVVI----------SDEFYSYDTKYINETGAQVIIPAAIDTDVSDRI 275
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
R A FQ L C AR+D + P + V + T G T
Sbjct: 276 RAVALAAFQALECCGMARVDVFLTPDNCIVINEINTLPGFT 316
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 26/114 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK I K
Sbjct: 95 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVVGSAVSMDK----------------DITK 138
Query: 698 DVRRKEDLLKTPIVDI---------WHELTSKLQCKTLCVKPARDGCSTGVARL 742
+ R L P + + + ++T+KL L +KPA G S GV+++
Sbjct: 139 RLLRDAGLNIAPFITLTRANQGHYSFEQVTAKLGLP-LFIKPANQGSSVGVSKV 191
Score = 40.4 bits (93), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
EI V+G SL V + S + S + K+ TG + P A + T+ D+ +
Sbjct: 221 EIECAVMGNDHPQASLCGEVVI--SDEFYSYDTKYINETGAQVIIPAA--IDTDVSDRIR 276
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPH 938
AL+ G +R+D F+ DN ++I E+NT+PG T + ++ L +
Sbjct: 277 AVALAAFQALECCGMARVDVFLTPDNC-IVINEINTLPGFT--NISMYPKLWRATGVGST 333
Query: 939 QFFRKVLDLGSER 951
+ ++++L ER
Sbjct: 334 ELITRLIELALER 346
>gi|91786975|ref|YP_547927.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666]
gi|123165280|sp|Q12EL3.1|DDL_POLSJ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|91696200|gb|ABE43029.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666]
Length = 338
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 153/374 (40%), Gaps = 83/374 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER ISL S R VL ++ R ++A+A PA+
Sbjct: 23 KVAVLMGGMSAEREISLMSGRGVLQALR-----------SRGVDAHAFD--------PAE 63
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D + L + EFA F +HGRFGEDG +Q LE +P+ G+G
Sbjct: 64 RD--ISELKK-----DEFAR--------CFIALHGRFGEDGTVQGALELLGIPYTGSGVM 108
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK M +G T LL+ +++S V +KL ++VKP R
Sbjct: 109 ASSMAIDKVMTKRVMLAEGLPTPTYVLLRRGSYGSADVSA--VPDKLGL---PLIVKPAR 163
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT G+ D++ +A E +D ++ E F+ G E T VL GS
Sbjct: 164 EGSSIGLTKVTERAGMADAVAQA-----EKLDADILCEQFIS-GDEVTCPVLGTGSEARA 217
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + D ++Y+ KY T Y P P EG
Sbjct: 218 LPV--------------IRIVAPDGNYDYQNKYF-TDTTQYLVPCGLP--------EGEE 254
Query: 376 LLFQRLGLCDFARID--GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
+ Q+L L + ++ GW + V T+ +IN GM S +
Sbjct: 255 AVIQQLVLQAYRTLNCRGW---ARADVMIDKVTR-------KPYLLEINTSPGMTGHSLV 304
Query: 434 FQQASKVGFSHSNI 447
A G S+ ++
Sbjct: 305 PMSARAAGISYEDL 318
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P I+E L K+ A FIA+HG GEDGT+Q LE G+PYTG GVMAS +DKV
Sbjct: 61 PAERDISE---LKKDEFARCFIALHGRFGEDGTVQGALELLGIPYTGSGVMASSMAIDKV 117
Query: 679 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 738
T + LA+ G+ T + R+ + + +L L VKPAR+G S G
Sbjct: 118 MTKRVM--LAE-GLPTPTYVLLRRGSYGSADVSAVPDKLG-----LPLIVKPAREGSSIG 169
Query: 739 VARL 742
+ ++
Sbjct: 170 LTKV 173
>gi|402299932|ref|ZP_10819494.1| D-alanine--D-alanine ligase [Bacillus alcalophilus ATCC 27647]
gi|401724918|gb|EJS98241.1| D-alanine--D-alanine ligase [Bacillus alcalophilus ATCC 27647]
Length = 304
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 161/378 (42%), Gaps = 83/378 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++ ++ GG SAER +SL+S + ++ ++ V ID N N
Sbjct: 1 MKIAVLYGGVSAEREVSLSSGKGIMTALKNKGHEVIG--IDFNPN--------------- 43
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
E E + +VDIV+ +HGR+GEDG +Q +L+ +P+VG+G
Sbjct: 44 -----------------ELEEIIQLDVDIVYIGLHGRYGEDGKVQALLDMLKIPYVGSGV 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + L ++ G +L E + F+ + P VVVKP
Sbjct: 87 QGSALAIDKAKSKLFFNRAGTRIAKEQVLFKHSFKEED----FICDVDYP----VVVKPN 138
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
+ GS+IG+T+A + + K I E +D+ +++E F++ G E T VL
Sbjct: 139 QEGSTIGITIA----EDEETLKNGIKEAFQLDETILLEEFIK-GIEVTVAVLGNKGDEKA 193
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV V++ K+ ++Y KY + P R +++ A
Sbjct: 194 LPV--------------VEIVSKNKHYDYEAKYAAGMS-EHIIPARISAEQTEYVQKHAV 238
Query: 376 LLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
L Q LG CD ++R+D + +P E G + ++N + GM TS
Sbjct: 239 LAHQVLG-CDIYSRVD-FIIP----------------EQGDPVILEVNTLPGMTPTSLYP 280
Query: 435 QQASKVGFSHSNILRTII 452
A ++G + ++ +I
Sbjct: 281 DAAKEIGLDYDEMIEKLI 298
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 129/303 (42%), Gaps = 71/303 (23%)
Query: 625 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 684
NE ++ + + V+I +HG GEDG +Q+LL+ +PY G GV S +DK + L
Sbjct: 43 NELEEIIQLDVDIVYIGLHGRYGEDGKVQALLDMLKIPYVGSGVQGSALAIDKAKSKLFF 102
Query: 685 NH----LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
N +A VL K ++ED I D+ + + VKP ++G + G+
Sbjct: 103 NRAGTRIAKEQVLF--KHSFKEEDF----ICDVDY---------PVVVKPNQEGSTIGI- 146
Query: 741 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800
AED EE L N A + E ++ E F+
Sbjct: 147 --TIAED--------EETL----KNGIKEAFQL-------DETILLEEFI---------- 175
Query: 801 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
+ +E+TV V+G G +L P V + E K+ G +
Sbjct: 176 ---------------KGIEVTVAVLGNKGDEKAL-PVVEIVSKNKHYDYEAKYAAGMSEH 219
Query: 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
+ P S TE + K L L + +SR+D F+ + G+ +I+EVNT+PGMTP
Sbjct: 220 IIPARISAEQTEYVQK---HAVLAHQVLGCDIYSRVD-FIIPEQGDPVILEVNTLPGMTP 275
Query: 921 STV 923
+++
Sbjct: 276 TSL 278
>gi|333980449|ref|YP_004518394.1| D-alanine--D-alanine ligase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823930|gb|AEG16593.1| D-alanine--D-alanine ligase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 372
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 166/391 (42%), Gaps = 52/391 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYA-ISSAQVYSNT-P 136
RV +I GG S E +SLNSA SV+ + D + I +A I AQ+ + P
Sbjct: 5 RVAVIFGGRSGEHQVSLNSAASVIGALDKDRYEIIPVAITPEGKWFAGIEPAQLLAGEDP 64
Query: 137 ADFDFKLESLAQ-GFGSLSEFAE-----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
++ LA +G L+ + +D+ P +HG FGEDG +Q +LE N+
Sbjct: 65 EQLGQRVALLADPTYGGLAPVGDGCIRVEQLRPIDVAIPVLHGTFGEDGTVQGLLELANI 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPN 248
P+VG G A DK ++ G V FL + E E V ++++
Sbjct: 125 PYVGAGVMASAVGMDKVMMKTVFARHGLPQVRFCHFLRR-----EWERDPEAVLDRVEQL 179
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
V VKP GSS+G++ A + L++A + D +++VE F ++ + +
Sbjct: 180 GYPVFVKPANLGSSVGISKARNR-EELRRAIDLA-ASYDRKIIVEEF----ADVREVEVS 233
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
V D PV LP E+ + + E ++Y KY+ + P R P
Sbjct: 234 VLGNDD--PVASLPGEI-------IPLNE---FYDYEAKYVEGKS-RLVIPARLP----- 275
Query: 369 SIREGASLL-FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
G ++L QRL +C F +D L + F + G +L +IN I G
Sbjct: 276 ----GQTMLELQRLAICAFKALDCAGL-ARVDFFLRRDN-------GAVLINEINTIPGF 323
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+TS + G + ++L +I A R
Sbjct: 324 TRTSMYPKLWEATGIPYQDLLDRLIELALER 354
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 132/321 (41%), Gaps = 82/321 (25%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV--ATSLALNHLADLGVLTINKDV 699
+HG GEDGT+Q LLE +PY G GVMAS MDKV T A + L + +
Sbjct: 105 LHGTFGEDGTVQGLLELANIPYVGAGVMASAVGMDKVMMKTVFARHGLPQVRFCHF---L 161
Query: 700 RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECL 759
RR+ + ++D +L + VKPA G S G+++ E+L +A++
Sbjct: 162 RREWERDPEAVLDRVEQLGY-----PVFVKPANLGSSVGISKARNREELR---RAIDLA- 212
Query: 760 LRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVE 819
S+ R +I E F + E
Sbjct: 213 -----ASYDRK-------------IIVEEFADVR-------------------------E 229
Query: 820 ITVGVIGKCGSMHSLMPSVTVKESGDILSLEE------KFQGGTGINLTP---PPASIMS 870
+ V V+G + SL G+I+ L E K+ G + P P +++
Sbjct: 230 VEVSVLGNDDPVASL--------PGEIIPLNEFYDYEAKYVEGKSRLVIPARLPGQTMLE 281
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
+ L C + AL G +R+D F+ DNG VLI E+NT+PG T ++ ++ L
Sbjct: 282 LQRLAICAFK------ALDCAGLARVDFFLRRDNGAVLINEINTIPGFTRTS--MYPKLW 333
Query: 931 EQPPMYPHQFFRKVLDLGSER 951
E + ++++L ER
Sbjct: 334 EATGIPYQDLLDRLIELALER 354
>gi|429098858|ref|ZP_19160964.1| D-alanine--D-alanine ligase [Cronobacter dublinensis 582]
gi|426285198|emb|CCJ87077.1| D-alanine--D-alanine ligase [Cronobacter dublinensis 582]
Length = 354
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 160/392 (40%), Gaps = 53/392 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQ-GQWHVNDASRYLLNAD 62
Query: 135 TPADFDF----KLESLAQGFGS---LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA K +L G + + +D++FP +HG GEDG +Q +L
Sbjct: 63 NPARIALHRSEKNVALIPGQSAQQLIDSDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK A + G P L + N ++ V +L
Sbjct: 123 ANIPFVGAGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRANRQRITFAEVKAQL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ V D + I L D +VVVE ++G
Sbjct: 179 -GLPLFVKPANQGSSVGVS---KVNDEAQYHAAIALAFEFDHKVVVETGIQGRE------ 228
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
+C VL + + G + V + ++Y KY+ Q P +
Sbjct: 229 ------IEC--AVLGNEDPQASTCGEIVVNSE--FYSYDTKYIDDQAARVVVPADIAPEI 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 279 NEKIRAIAVRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISMYPK 330
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G + ++ +I A +R
Sbjct: 331 LWQAS---------GIGYQELITRLIELALAR 353
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 18/111 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGAGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R++ + E+ ++L L VKPA G S GV+++
Sbjct: 158 FITLTRANRQR---------ITFAEVKAQLGL-PLFVKPANQGSSVGVSKV 198
>gi|317455526|pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
gi|317455527|pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
gi|317455528|pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
gi|317455529|pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
Length = 367
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 163/398 (40%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 7 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 65
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 66 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 121
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 122 XLRVANLPFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 179
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 180 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 232
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 233 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 275
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D VF +++ + ++ +
Sbjct: 276 QIPSEVNDKIRAIAIQAYQTLGCAGXARVD---------VFLTADNE--------VVINE 318
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S + G +++++ +I A R
Sbjct: 319 INTLPGFTNISXYPKLWQASGLGYTDLISRLIELALER 356
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ L +P+ G V++S C DK +A L D G+
Sbjct: 105 IFPIVHGTLGEDGSLQGXLRVANLPFVGSDVLSSAACXDK---DVAKRLLRDAGLNIAPF 161
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 162 ITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 202
>gi|336248954|ref|YP_004592664.1| D-alanine--D-alanine ligase [Enterobacter aerogenes KCTC 2190]
gi|334735010|gb|AEG97385.1| D-alanine--D-alanine ligase A [Enterobacter aerogenes KCTC 2190]
Length = 365
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 168/397 (42%), Gaps = 63/397 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y P
Sbjct: 4 MRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTRFDVVLLGIDKQ-GLWHINDASNYLLNPQ 62
Query: 138 D-FDFKLE----SLAQGFGS------LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
D L +LAQ G ++ + LAA +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSDVTLAQIPGRDAHQLINADSGQPLAA-IDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK D + + + +++ F+ + N + S V
Sbjct: 122 MANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRQQFSFADVKA 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + L +A + E D +VVVE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVKSEEEYL-QAVALAFE-FDHKVVVEQGIK-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL D C +VL + Y KY+ + P
Sbjct: 231 CAVLGNDYPQASTCGEIVL-----------------NSEFYAYDTKYIDDKGAQVVVPAA 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR+ A +Q LG AR+D + TE ++ +I
Sbjct: 274 IAPEINDKIRDIAVRAYQTLGCSGMARVDVFL-----------------TEDNEVVINEI 316
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
N + G S + G +++++ +I A R
Sbjct: 317 NTLPGFTNISMYPKLWQASGLDYTSLISRLIELALER 353
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 115/285 (40%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L L+ +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R++ + ++ +KL L VKPA G S GV++ VK+
Sbjct: 161 LTRANRQQFS---------FADVKAKLGL-PLFVKPANQGSSVGVSK----------VKS 200
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
EE L + L F E D + Q KG
Sbjct: 201 EEEYLQAVA--------------------LAF----EFDHKVVVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + + + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDYPQASTCGEIVL--NSEFYAYDTKYIDDKGAQVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 280 DKIRDIAVRAYQTLGCSGMARVDVFLTEDN-EVVINEINTLPGFT 323
>gi|429088748|ref|ZP_19151480.1| D-alanine--D-alanine ligase [Cronobacter universalis NCTC 9529]
gi|426508551|emb|CCK16592.1| D-alanine--D-alanine ligase [Cronobacter universalis NCTC 9529]
Length = 366
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 163/402 (40%), Gaps = 55/402 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQ-GQWHVNDASRYLLNAE 62
Query: 135 TPADFDF----KLESLAQGFGSLSEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA K +L G S + E +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALHRSEKNVALIPGL-SQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+G + DK A + G P L + + +S V +L
Sbjct: 122 MANIPFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRASRQRISFEDVKAQL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V D + + L D +VVVE ++G
Sbjct: 179 --GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIKGRE----- 228
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
+C VL E + G + V + ++Y KY+ Q P
Sbjct: 229 -------IEC--AVLGNEEPQASTCGEIVVSSE--FYSYDTKYIDDQAARVVVPADIAPD 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 278 VNEKIRAIAVRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISMYP 329
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ Q S G + ++ +I A R AS S
Sbjct: 330 KLWQAS---------GIGYQELITRLIELALERHQADASLKS 362
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 18/111 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R++ + ++ ++L L VKPA G S GV+++
Sbjct: 158 FITLTRASRQRIS---------FEDVKAQLGL-PLFVKPANQGSSVGVSKV 198
>gi|183981746|ref|YP_001850037.1| D-alanyl-alanine synthetase A [Mycobacterium marinum M]
gi|183175072|gb|ACC40182.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M]
Length = 373
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 170/406 (41%), Gaps = 53/406 (13%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------D 118
M+ +R G LRV ++ GG S E IS SA S+L ++ V I D
Sbjct: 1 MSGSSRRGERLRVAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTD 60
Query: 119 RNLNAYAISS---AQVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGR 174
N +A AI+ +V S + + + G SL A + A+VD+VFP +HG
Sbjct: 61 GNPDALAITDRRLPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGP 120
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE--VN 232
+GEDG IQ +LE VP+VG G A DK S G P +L+ S ++
Sbjct: 121 YGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLD 180
Query: 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 292
EL + VKP R GSSIGV+ D L A D +V+V
Sbjct: 181 REELQRLGL---------PAYVKPARGGSSIGVS-RVSSFDELPAAIAAARRH-DPKVIV 229
Query: 293 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
E + G E VL+ G + T E++ G V RE D +++ KYL
Sbjct: 230 EAAIN-GRELECGVLEFPDGR-----LEASTLGEIRVAG-VRGRE-DGFYDFETKYL-DD 280
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
P + V +++R+ A F+ + AR+D +FL T+
Sbjct: 281 AAELDVPAKVEDDVADAVRQLAIRAFEAIDCQGLARVD-FFL----------------TD 323
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G ++ +IN + G S + + G + +L T++ A SR
Sbjct: 324 DGPVI-NEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALSR 368
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT----SLALNHLADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV+AS MDK T S A + VL
Sbjct: 113 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVL 172
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
++ +E+L + + VKPAR G S GV+R+ ++L +
Sbjct: 173 RPSRQSLDREELQRLGL--------------PAYVKPARGGSSIGVSRVSSFDELPAAIA 218
Query: 754 A 754
A
Sbjct: 219 A 219
>gi|374672418|dbj|BAL50309.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. lactis
IO-1]
Length = 361
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 173/402 (43%), Gaps = 54/402 (13%)
Query: 63 LEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLN 122
+ D+ ++K+ R + L+ GG SAER +S+ SA SV+ + +V+ Y+I +
Sbjct: 1 MSDKAVSKKGRNMSKETLILLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGE 60
Query: 123 AYAISSAQVYSNTPADFDFKL-ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGI 181
Q +++ PA+ + L LA+ + +S A + +VFP +HG GEDG I
Sbjct: 61 ---FIKTQEFTDKPAEEEKLLTNDLAESYPKISPAA--IYEKDAVVFPVLHGPMGEDGSI 115
Query: 182 QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
Q LE + +VG + DK A G VP ++ ++ N+ E++ V
Sbjct: 116 QGFLEILRLAYVGPNILSASSTMDKLLAKHVFEAVGVPQVP-YVAAFADENQGEIAQEVV 174
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGG 299
P V VKP GSS+G++ +D L + + E D+RVV+E +
Sbjct: 175 EKLEFP----VFVKPANMGSSVGIS----KVDDLADLQPALSEAYKYDNRVVIEQGVY-A 225
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEV--ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357
E VL G + LP EV +++F ++Y KY+ ++
Sbjct: 226 REIECAVL----GNNSDVAATLPGEVVKDVEF------------YDYNSKYI-DNKIQMD 268
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P + P + ++E A ++ + +R D +F+ T+ G +
Sbjct: 269 IPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCD-FFV----------------TKDGNVY 311
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+IN I G Q S +G S+S+++ ++ A F
Sbjct: 312 LNEINAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLAKETF 353
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 125/333 (37%), Gaps = 88/333 (26%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE + Y GP ++++ + MDK+ LA + +GV
Sbjct: 96 EKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMDKL---LAKHVFEAVGV 152
Query: 693 LTINKDVRRKEDLLKTPIV---------DIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+ P V +I E+ KL+ VKPA G S G++++
Sbjct: 153 PQV-------------PYVAAFADENQGEIAQEVVEKLEFPVF-VKPANMGSSVGISKV- 197
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
+DL AL E
Sbjct: 198 --DDLADLQPALSEAY-------------------------------------------- 211
Query: 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK--ESGDILS--LEEKFQGGTGI 859
K +R++ + EI V+G + + +P VK E D S ++ K Q
Sbjct: 212 KYDNRVVIEQGVYAREIECAVLGNNSDVAATLPGEVVKDVEFYDYNSKYIDNKIQMDIPA 271
Query: 860 NLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ A M A+ K A+ G SR D FV D G V + E+N +PG T
Sbjct: 272 KVPADLAQKMQEYAIKAYK--------AVNGTGLSRCDFFVTKD-GNVYLNEINAIPGFT 322
Query: 920 PSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ ++ L E + K++DL E F
Sbjct: 323 QWS--MYPLLWENMGLSYSDLIEKLVDLAKETF 353
>gi|134095969|ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas arsenicoxydans]
gi|190359141|sp|A4G8T6.1|DDL_HERAR RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|133739872|emb|CAL62923.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B)
(D-Ala-D-Ala ligase B) [Herminiimonas arsenicoxydans]
Length = 334
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 127/308 (41%), Gaps = 66/308 (21%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P S+ E LA E VFIA+HG GEDGTLQ LE G+PYTGPGVMAS MDKV
Sbjct: 52 PAERSLAE---LAAEKFDRVFIALHGSYGEDGTLQGALEQLGIPYTGPGVMASAISMDKV 108
Query: 679 ATS-LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 737
T + L+H GV T V E + + E L +K +G +
Sbjct: 109 MTKRVCLSH----GVPTPRFTVLDAETTSAAQLQSVAAEFGLPLM-----LKAPHEGSTI 159
Query: 738 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 797
G+A++ AE + ++ +++ E FV
Sbjct: 160 GIAKVETAEGM----------------------QAGFDLCAKYEAVVLVEQFV------- 190
Query: 798 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 857
KG E+TV VIG G +P V ++ E K+
Sbjct: 191 --------------KGR----ELTVPVIGS-GRNARALPIVEIRAPQGNYDYEHKYFSND 231
Query: 858 GINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 916
L P P EA K Q + + A NA+ G+SR+D V + E ++E+NT P
Sbjct: 232 TEYLCPAPFD----EAFTKRVQALAVSAFNAVGCTGWSRVDFMVRASDNEPFLLEINTSP 287
Query: 917 GMTPSTVL 924
GMT +++
Sbjct: 288 GMTSHSLV 295
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 126/317 (39%), Gaps = 67/317 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S + VL +Q + ++A+A A+
Sbjct: 14 KVGVLFGGRSAEREVSLMSGKGVLAALQ-----------SKGVDAHAFDPAER------- 55
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
SL+E A A D VF +HG +GEDG +Q LE+ +P+ G G
Sbjct: 56 -------------SLAELA---AEKFDRVFIALHGSYGEDGTLQGALEQLGIPYTGPGVM 99
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A + DK G T +L + ++L + L +++K
Sbjct: 100 ASAISMDKVMTKRVCLSHGVPTPRFTVLDAETTSAAQLQSVAAEFGL-----PLMLKAPH 154
Query: 259 AGSSIGVTVAYGVIDSLKKAKGI-----ILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
GS+IG I ++ A+G+ + + V+VE F++ G E T V+ G
Sbjct: 155 EGSTIG-------IAKVETAEGMQAGFDLCAKYEAVVLVEQFVK-GRELTVPVIGSGRNA 206
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
P+ V++R ++Y KY + Y P F ++
Sbjct: 207 RALPI--------------VEIRAPQGNYDYEHKYF-SNDTEYLCPAPFDEAFTKRVQAL 251
Query: 374 ASLLFQRLGLCDFARID 390
A F +G ++R+D
Sbjct: 252 AVSAFNAVGCTGWSRVD 268
>gi|354808530|ref|ZP_09041921.1| D-alanine--D-alanine ligase family protein [Lactobacillus curvatus
CRL 705]
gi|354512988|gb|EHE85044.1| D-alanine--D-alanine ligase family protein [Lactobacillus curvatus
CRL 705]
Length = 350
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 174/400 (43%), Gaps = 85/400 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ--GDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+++ ++ GG S ER +SL S + + +Q G D+ ++ +L+ A S +YS+T
Sbjct: 1 MKIVVLAGGRSTERNVSLTSGHKITNALQTKGHDVAFVDLFLGNDLHDVA-SIDDLYSST 59
Query: 136 PA--DFDFKLESLAQGF-------GSLSEFAEH---LAANVDIVFPTIHGRFGEDGGIQE 183
P D+D E L GS F + + DIVF +HG GEDG +Q
Sbjct: 60 PVEKDYDISDEVLTDDAINALRTDGSTQLFGPNVLEICKTADIVFLALHGGDGEDGKVQA 119
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
VL+ + +P+ G+ + A A + MSK+ V +L +++ + +
Sbjct: 120 VLDLFGIPYTGSDTLA---------AGITMSKK----VSKEVLLYNQIPTARFVAAYRDQ 166
Query: 244 KLD--PNSGKVVVKPTRAGSSIGVTVAY-------GVIDSLKKAKGIILEGIDDRVVVEL 294
+ P VVVKP+ GSS+G + + V D+L+ D ++E
Sbjct: 167 PMPEIPFEYPVVVKPSNGGSSVGTHIVHNEAELQPAVEDALR---------FDREALIEE 217
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
F++ G EF+ V+ + P LP ++++ D +++ K++
Sbjct: 218 FIK-GREFSLGVI------NGQP---LP---------AIEIVVNDGWYDFEHKFVTGNTT 258
Query: 355 AYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS-THVFSSSETKYGSTE 412
+ TPP P V ++++ A Q LGL ++ARID ++ P + HV
Sbjct: 259 QFVTPPNDLPDDVHEAMKQMALDAMQALGLTNYARIDFFWSPENGLHVIEG--------- 309
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
N + GM S + Q+A +G S+ ++ I+
Sbjct: 310 ---------NTLPGMTPLSLIPQEAEVLGISYPDLCEMIV 340
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 119/293 (40%), Gaps = 72/293 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTI 695
VF+A+HGG GEDG +Q++L+ G+PYTG +A+ M K + L N + +
Sbjct: 103 VFLALHGGDGEDGKVQAVLDLFGIPYTGSDTLAAGITMSKKVSKEVLLYNQIPTARFVAA 162
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+D E + P+V VKP+ G S G + +L A+
Sbjct: 163 YRDQPMPEIPFEYPVV----------------VKPSNGGSSVGTHIVHNEAELQ---PAV 203
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
E+ L F R E LI E F+ KG
Sbjct: 204 EDAL------RFDR------------EALI-EEFI---------------------KGR- 222
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
E ++GVI +P++ + + E KF G PP + + +
Sbjct: 223 ---EFSLGVING-----QPLPAIEIVVNDGWYDFEHKFVTGNTTQFVTPPND-LPDDVHE 273
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
KQ AL L ++RID F + +NG + +IE NT+PGMTP +++ +A
Sbjct: 274 AMKQMALDAMQALGLTNYARIDFFWSPENG-LHVIEGNTLPGMTPLSLIPQEA 325
>gi|425252624|ref|ZP_18645517.1| D-alanine--D-alanine ligase A [Escherichia coli CB7326]
gi|408187191|gb|EKI13167.1| D-alanine--D-alanine ligase A [Escherichia coli CB7326]
Length = 364
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + + +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITLTRAIRHN-ISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + +R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRAIRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|386617872|ref|YP_006137452.1| D-alanine--D-alanine ligase [Escherichia coli NA114]
gi|387828395|ref|YP_003348332.1| D-alanine-D-alanine ligase [Escherichia coli SE15]
gi|432396256|ref|ZP_19639048.1| D-alanine-D-alanine ligase A [Escherichia coli KTE25]
gi|432405252|ref|ZP_19647975.1| D-alanine-D-alanine ligase A [Escherichia coli KTE28]
gi|432420492|ref|ZP_19663050.1| D-alanine-D-alanine ligase A [Escherichia coli KTE178]
gi|432498626|ref|ZP_19740406.1| D-alanine-D-alanine ligase A [Escherichia coli KTE216]
gi|432557399|ref|ZP_19794092.1| D-alanine-D-alanine ligase A [Escherichia coli KTE49]
gi|432693166|ref|ZP_19928381.1| D-alanine-D-alanine ligase A [Escherichia coli KTE162]
gi|432709213|ref|ZP_19944282.1| D-alanine-D-alanine ligase A [Escherichia coli KTE6]
gi|432721945|ref|ZP_19956872.1| D-alanine-D-alanine ligase A [Escherichia coli KTE17]
gi|432726491|ref|ZP_19961374.1| D-alanine-D-alanine ligase A [Escherichia coli KTE18]
gi|432740178|ref|ZP_19974900.1| D-alanine-D-alanine ligase A [Escherichia coli KTE23]
gi|432917511|ref|ZP_20122042.1| D-alanine-D-alanine ligase A [Escherichia coli KTE173]
gi|432924816|ref|ZP_20126955.1| D-alanine-D-alanine ligase A [Escherichia coli KTE175]
gi|432979886|ref|ZP_20168667.1| D-alanine-D-alanine ligase A [Escherichia coli KTE211]
gi|432989487|ref|ZP_20178157.1| D-alanine-D-alanine ligase A [Escherichia coli KTE217]
gi|433095249|ref|ZP_20281465.1| D-alanine-D-alanine ligase A [Escherichia coli KTE139]
gi|433104517|ref|ZP_20290540.1| D-alanine-D-alanine ligase A [Escherichia coli KTE148]
gi|433109634|ref|ZP_20295514.1| D-alanine-D-alanine ligase A [Escherichia coli KTE150]
gi|254967088|gb|ACT97586.1| D-alanyl-alanine synthetase A [mixed culture bacterium
CY_gF1DD01_14]
gi|281177552|dbj|BAI53882.1| D-alanine-D-alanine ligase [Escherichia coli SE15]
gi|333968373|gb|AEG35178.1| D-alanyl-D-alanine ligase [Escherichia coli NA114]
gi|430918638|gb|ELC39639.1| D-alanine-D-alanine ligase A [Escherichia coli KTE25]
gi|430932748|gb|ELC53167.1| D-alanine-D-alanine ligase A [Escherichia coli KTE28]
gi|430947657|gb|ELC67354.1| D-alanine-D-alanine ligase A [Escherichia coli KTE178]
gi|431032220|gb|ELD44931.1| D-alanine-D-alanine ligase A [Escherichia coli KTE216]
gi|431094452|gb|ELE00084.1| D-alanine-D-alanine ligase A [Escherichia coli KTE49]
gi|431237308|gb|ELF32308.1| D-alanine-D-alanine ligase A [Escherichia coli KTE162]
gi|431252934|gb|ELF46448.1| D-alanine-D-alanine ligase A [Escherichia coli KTE6]
gi|431268307|gb|ELF59781.1| D-alanine-D-alanine ligase A [Escherichia coli KTE17]
gi|431276599|gb|ELF67619.1| D-alanine-D-alanine ligase A [Escherichia coli KTE18]
gi|431286307|gb|ELF77133.1| D-alanine-D-alanine ligase A [Escherichia coli KTE23]
gi|431447384|gb|ELH28116.1| D-alanine-D-alanine ligase A [Escherichia coli KTE173]
gi|431449475|gb|ELH30048.1| D-alanine-D-alanine ligase A [Escherichia coli KTE175]
gi|431496507|gb|ELH76090.1| D-alanine-D-alanine ligase A [Escherichia coli KTE211]
gi|431498732|gb|ELH77917.1| D-alanine-D-alanine ligase A [Escherichia coli KTE217]
gi|431619819|gb|ELI88716.1| D-alanine-D-alanine ligase A [Escherichia coli KTE139]
gi|431631711|gb|ELJ00017.1| D-alanine-D-alanine ligase A [Escherichia coli KTE150]
gi|431634541|gb|ELJ02782.1| D-alanine-D-alanine ligase A [Escherichia coli KTE148]
Length = 364
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 165/397 (41%), Gaps = 63/397 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + A + E D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVTSE-EQYTIAVDLAFE-FDHKVIVEQGIK-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL + C +VL + Y KY+ P
Sbjct: 231 CAVLGNNNPQASTCGEIVL-----------------TSDFYAYDTKYIDEDGAKVVVPAA 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR A +Q LG AR+D + P + V + T G FT+I
Sbjct: 274 IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNI 325
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ + Q S G +++++ +I A R
Sbjct: 326 SMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E T+ V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYTIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNNNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|254557128|ref|YP_003063545.1| D-alanyl-alanine synthetase A [Lactobacillus plantarum JDM1]
gi|308181131|ref|YP_003925259.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380033060|ref|YP_004890051.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1]
gi|418275859|ref|ZP_12891182.1| D-alanine-D-alanine ligase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|38257320|sp|Q88UV8.1|DDL_LACPL RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|254046055|gb|ACT62848.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1]
gi|308046622|gb|ADN99165.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342242303|emb|CCC79537.1| D-alanine-D-alanine ligase [Lactobacillus plantarum WCFS1]
gi|376009410|gb|EHS82739.1| D-alanine-D-alanine ligase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 370
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 169/390 (43%), Gaps = 64/390 (16%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA---QVY 132
+ + VG++ GG S+E +S SA ++ D + + + + I +N +S A +V+
Sbjct: 5 KKIHVGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKN--GIVLSDAATRRVF 62
Query: 133 SNTPADFDFKLE----SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
P D E ++ + LA ++DI +P +HG GEDG +Q + +
Sbjct: 63 DGEPEDQVVAEEMPKLDMSDPLAPIKNLT--LAKDIDIFYPVVHGNLGEDGTLQGLFKLL 120
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
P+VG+G A +FDK D + ++ I +++ E N +++ ++ +
Sbjct: 121 KKPYVGSGVLASAASFDK-DITKQILTHHHIQNTKYVVVTPE-NRDQMTYAYLQAHV--- 175
Query: 249 SGKVVVKPTRAGSSIGVTVAY-------GVIDSLKKAKGIIL-EGIDDRVVVELFLEGGS 300
+ +KP GSSIG+ A G+ D+ K I++ E ID+ VE + G
Sbjct: 176 GDHLFIKPANQGSSIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREVECSILGNE 235
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
A L G++DV + D ++Y K++ V + P
Sbjct: 236 NPKASKL-----------------------GAIDVPKTDTFYDYNNKFVDASGVTFELPV 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL-FT 419
P + I++ + F+ LGL AR+D FL S E G E T+ FT
Sbjct: 273 ELPADLTKRIQQMSLDAFKALGLKGMARVD--FLVS-----EDGEPYLG--EINTLPGFT 323
Query: 420 DINL------ISGMEQTSFLFQQASKVGFS 443
+I+L +SG+ T+ L Q ++GF
Sbjct: 324 NISLYPKLWEVSGISYTA-LIDQLIQLGFD 352
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 117/289 (40%), Gaps = 73/289 (25%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+ VHG +GEDGTLQ L + PY G GV+AS DK T L H
Sbjct: 100 YPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTH----------HH 149
Query: 699 VRRKEDLLKTPIVDIWHELT-SKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKA 754
++ + ++ TP + ++T + LQ L +KPA G S G+ + AE+ Y+
Sbjct: 150 IQNTKYVVVTP--ENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHK---AENEQEYLDG 204
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L + + D + +S + N
Sbjct: 205 LADAF-------------------------------KYDYKILVEESID----------N 223
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMST 871
R VE + ++G S + ++ V ++ KF +G+ P PA
Sbjct: 224 PREVECS--ILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVELPAD---- 277
Query: 872 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L K Q++ L A AL L+G +R+D V+ D GE + E+NT+PG T
Sbjct: 278 --LTKRIQQMSLDAFKALGLKGMARVDFLVSED-GEPYLGEINTLPGFT 323
>gi|104773391|ref|YP_618371.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|418036427|ref|ZP_12674846.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
gi|123077164|sp|Q1G7Q5.1|DDL_LACDA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|103422472|emb|CAI97025.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|354687740|gb|EHE87810.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1519]
Length = 362
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 161/389 (41%), Gaps = 51/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTP 136
+VGLI GG S+E +S+ SA ++ I D V +I + Y S A Y P
Sbjct: 6 QVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNS--GYVASEADSYKVLEEP 63
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
K + A +L E A +D++FP +HG GEDG +Q + + PFVG
Sbjct: 64 GYMVEKNDKTAN-LSNLIELASR--PELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++++ + + + +LS +V+ +L +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRY--EYEDAKNQKLSYDWVSGQL--GTSN 176
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP+ GSS+G+T V D A+ + DD+V+VE + G TA++
Sbjct: 177 LFVKPSNQGSSVGIT---HVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVL---- 229
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D HPVV ++ + + ++Y KY P + P +
Sbjct: 230 -GND-HPVVSGVGQI---------INADNTWYSYENKYSTESTTTLQIPAQIPAETAEKV 278
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A ++Q AR+D S G ++F ++N + G
Sbjct: 279 QENALKIYQITECSGMARVDSMLRESD----------------GEVIFNELNALPGFTNI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S+ +++ +I A R+
Sbjct: 323 SMYPKLFEEAGISYPDLITRLIRLAEERY 351
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 66/321 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG LQ L P+ G V+A+ MDK T + LA + + K
Sbjct: 91 LFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAVTMDKEFTKI----LAQRAGVPVAK 146
Query: 698 DVRRK----EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V K ED + W ++ +L L VKP+ G S G+ + D + Y +
Sbjct: 147 WVSIKRYEYEDAKNQKLSYDW--VSGQLGTSNLFVKPSNQGSSVGITHVT---DDSNYAE 201
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E ++L+ E V T+
Sbjct: 202 ALAEAF------------------KYDDKVLVEEGIVGTE-------------------- 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
VE V G+ H ++ V + S E K+ + L P +
Sbjct: 224 ----VETAV-----LGNDHPVVSGVGQIINADNTWYSYENKYSTESTTTLQIPAQ--IPA 272
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E +K ++ I + G +R+D+ + +GEV+ E+N +PG T + ++ L E
Sbjct: 273 ETAEKVQENALKIYQITECSGMARVDSMLRESDGEVIFNELNALPGFT--NISMYPKLFE 330
Query: 932 QPPMYPHQFFRKVLDLGSERF 952
+ + +++ L ER+
Sbjct: 331 EAGISYPDLITRLIRLAEERY 351
>gi|432892998|ref|ZP_20105103.1| D-alanine-D-alanine ligase A [Escherichia coli KTE165]
gi|431425450|gb|ELH07520.1| D-alanine-D-alanine ligase A [Escherichia coli KTE165]
Length = 364
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 165/397 (41%), Gaps = 63/397 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHL---AAN------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH A N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFVEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + A + E D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVTSE-EQYTIAVDLAFE-FDHKVIVEQGIK-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL + C +VL + Y KY+ P
Sbjct: 231 CAVLGNNNPQASTCGEIVL-----------------TSDFYAYDTKYIDEDGAKVVVPAA 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR A +Q LG AR+D + P + V + T G FT+I
Sbjct: 274 IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNI 325
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ + Q S G +++++ +I A R
Sbjct: 326 SMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E T+ V
Sbjct: 161 LTRANRHNISFV---------EVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYTIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNNNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|123443414|ref|YP_001007387.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090375|emb|CAL13243.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 366
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 166/392 (42%), Gaps = 53/392 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GKWHVNDASNYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLA-------ANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + +A A +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALISLNHSNKNVALIPGQEHQQLIATDSASALAQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+G + DK D + + + + + F+ + N+ VT KL
Sbjct: 123 ANIPFVGSGVVGSAVSMDK-DITKRLLRDAGLNIAPFITL-TRANKDNYRFEQVTAKLGL 180
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ +KP GSS+GV+ V ++ + + + L D +V+VE +AI
Sbjct: 181 ---PLFIKPANQGSSVGVS---KVRNAYEYEQAVALAFDFDHKVLVE---------SAI- 224
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
VG +C V+ + G V + D ++Y KY+ P V
Sbjct: 225 --VGREIEC--AVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVIIPASIDSAV 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
++IR A F+ L AR+D VF +++ TI+ +IN + G
Sbjct: 279 SDNIRAVALAAFRALECRGMARVD---------VFLTADN--------TIIINEINTLPG 321
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G + ++ T+I A R
Sbjct: 322 FTNISMYPKLWRATGVGSTELITTLIELALER 353
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 123/288 (42%), Gaps = 72/288 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 693
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L ++A L
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITL 161
Query: 694 T-INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
T NKD R + ++T+KL L +KPA G S GV+++ A + Y
Sbjct: 162 TRANKDNYR------------FEQVTAKLGLP-LFIKPANQGSSVGVSKVRNAYE---YE 205
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+A+ +F H ++L+ V
Sbjct: 206 QAVAL--------AFDFDH----------KVLVESAIV---------------------- 225
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
R +E V+G SL V + S + S + K+ TG + PASI S
Sbjct: 226 --GREIE--CAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVI-IPASIDS-- 276
Query: 873 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
A+ + + L A AL+ G +R+D F+ DN ++I E+NT+PG T
Sbjct: 277 AVSDNIRAVALAAFRALECRGMARVDVFLTADN-TIIINEINTLPGFT 323
>gi|448821842|ref|YP_007415004.1| D-alanine--D-alanine ligase [Lactobacillus plantarum ZJ316]
gi|448275339|gb|AGE39858.1| D-alanine--D-alanine ligase [Lactobacillus plantarum ZJ316]
Length = 374
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 171/398 (42%), Gaps = 64/398 (16%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
M K + + VG++ GG S+E +S SA ++ D + + + + I +N +S
Sbjct: 1 MNKIMETQKKIHVGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKN--GIVLS 58
Query: 128 SA---QVYSNTPADFDFKLE----SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
A +V+ P D E ++ + LA ++DI +P +HG GEDG
Sbjct: 59 DAATRRVFDGEPEDQVVAEEMPKLDMSDPLAPIKNLT--LAKDIDIFYPVVHGNLGEDGT 116
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
+Q + + P+VG+G A +FDK D + ++ I +++ E N +++ +
Sbjct: 117 LQGLFKLLKKPYVGSGVLASAASFDK-DITKQILTHHHIQNTKYVVVTPE-NRDQMTYAY 174
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAY-------GVIDSLKKAKGIIL-EGIDDRVVV 292
+ + + +KP GSSIG+ A G+ D+ K I++ E ID+ V
Sbjct: 175 LQVHV---GDHLFIKPANQGSSIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREV 231
Query: 293 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
E + G A L G++DV + D ++Y K++
Sbjct: 232 ECSILGNENPKASKL-----------------------GAIDVPKTDTFYDYNNKFVDAS 268
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
V + P P + I++ + F+ LGL AR+D FL S E G E
Sbjct: 269 GVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVD--FLVS-----EDGEPYLG--E 319
Query: 413 WGTIL-FTDINL------ISGMEQTSFLFQQASKVGFS 443
T+ FT+I+L +SG+ T+ L Q ++GF
Sbjct: 320 INTLPGFTNISLYPKLWEVSGISYTA-LIDQLIQLGFD 356
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 117/289 (40%), Gaps = 73/289 (25%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+ VHG +GEDGTLQ L + PY G GV+AS DK T L H
Sbjct: 104 YPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTH----------HH 153
Query: 699 VRRKEDLLKTPIVDIWHELT-SKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKA 754
++ + ++ TP + ++T + LQ L +KPA G S G+ + AE+ Y+
Sbjct: 154 IQNTKYVVVTP--ENRDQMTYAYLQVHVGDHLFIKPANQGSSIGIHK---AENEQEYLDG 208
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L + + D + +S + N
Sbjct: 209 LADAF-------------------------------KYDYKILVEESID----------N 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMST 871
R VE + ++G S + ++ V ++ KF +G+ P PA
Sbjct: 228 PREVECS--ILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVELPAD---- 281
Query: 872 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L K Q++ L A AL L+G +R+D V+ D GE + E+NT+PG T
Sbjct: 282 --LTKRIQQMSLDAFKALGLKGMARVDFLVSED-GEPYLGEINTLPGFT 327
>gi|254967090|gb|ACT97587.1| putative D-alanine-D-alanine ligase [uncultured organism]
gi|254967092|gb|ACT97588.1| putative D-alanine-D-alanine ligase [uncultured organism]
Length = 372
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 159/395 (40%), Gaps = 50/395 (12%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISS---AQVYSNTP 136
V L+CGG S+E ISL +A VL I V I R+ Y A++ + T
Sbjct: 7 VALLCGGRSSEHPISLITAAGVLGAIDRTAYEVITIGITRDGRWYLTDEQQLAELTAGTR 66
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLA-----------ANVDIVFPTIHGRFGEDGGIQEVL 185
+F E Q F + L A VD+VFP +HG FGEDG +Q +L
Sbjct: 67 GTAEFP-EGTQQVFLPMGTGDSRLTLVDAEGIVTRTAPVDVVFPLLHGPFGEDGTVQGLL 125
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
E ++ +VG G A DK+ + G P ++ E + + ++
Sbjct: 126 EMADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNREWEHEDREQ--ILERV 183
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFT 303
+ VKPTRAGSS G+T +DS+++ I E D ++++E + G E
Sbjct: 184 LKLGFPLFVKPTRAGSSFGIT----KVDSVEELVPAIEEARRHDPKIIIEAGIV-GREIE 238
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VLD G P P E+E+ V + +++ KY+ P P
Sbjct: 239 CAVLDGHHG--EMPRASYPGEIEV-------VDQDHGFYDFEAKYVSESSAVTVCPANLP 289
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V +RE L + F +DG L S + TE G ++ ++N
Sbjct: 290 QDVQERLRE--------LAVKAFLALDGEGL---------SRADFFYTEDGRLVINEVNT 332
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S G S+++++ ++ A R
Sbjct: 333 MPGFTPISMYKTMWENTGISYTDLISELLTLAMER 367
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 130/322 (40%), Gaps = 65/322 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTIN 696
VF +HG GEDGT+Q LLE + Y G GV AS MDK +A ++G +
Sbjct: 107 VFPLLHGPFGEDGTVQGLLEMADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVV 166
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ R E + I+ E KL L VKP R G S G+ ++ E+L V A+E
Sbjct: 167 TN-REWEHEDREQIL----ERVLKLGFP-LFVKPTRAGSSFGITKVDSVEEL---VPAIE 217
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
E +R H P+I+I V R
Sbjct: 218 E----------ARRHD--------PKIIIEAGIV------------------------GR 235
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
+E V H MP + +++ + F ++ A + L +
Sbjct: 236 EIECAV-----LDGHHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQ 290
Query: 877 -CKQRIELIAN----ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
++R+ +A AL EG SR D F ++G ++I EVNT+PG TP + +++ + E
Sbjct: 291 DVQERLRELAVKAFLALDGEGLSRAD-FFYTEDGRLVINEVNTMPGFTP--ISMYKTMWE 347
Query: 932 QPPMYPHQFFRKVLDLGSERFL 953
+ ++L L ER L
Sbjct: 348 NTGISYTDLISELLTLAMERPL 369
>gi|451823278|ref|YP_007459552.1| D-alanine-D-alanine ligase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451776078|gb|AGF47119.1| D-alanine-D-alanine ligase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 309
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 160/379 (42%), Gaps = 79/379 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++CGG S+ER ISL S +++ + ++ R L+ Y + + NT D
Sbjct: 7 KVGILCGGQSSEREISLLSGQNIYNALKS-----------RGLDVYLFDTGE---NTVPD 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ D+VF +HG++GEDG IQ VLE N+P+ G+G
Sbjct: 53 L--------------------VKEKFDVVFIALHGKYGEDGSIQGVLELLNIPYTGSGHM 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A +K + ++ QG + P F + + N S+ LD +++KP
Sbjct: 93 ASSIAMNKV-ITKKLWMQGGLPTPMF-FKLDKNNNSKCD-------LDILGFPLIIKPVH 143
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G+ VA D + K +L D+ V E ++ G E T +++ + + P+
Sbjct: 144 GGSTLGIKVANSYDDIDEAYKKAVL--FDNEVFAEKYIV-GRELTVSIIENNNDIEVLPI 200
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+ + T + ++Y KY +++ Y P + N I + + +
Sbjct: 201 IEIIT--------------PNHSYDYEHKYF-SEETKYLCPANLSKEITNDIIKISKDAY 245
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ + +ARID E+ +IN GM S + A
Sbjct: 246 KIIECRGWARIDILL-----------------DEYDKPWLLEINTSPGMTSHSLVPISAR 288
Query: 439 KVGFSHSNI-LRTIIGHAC 456
++G +S++ L+ + G +C
Sbjct: 289 EIGVDYSDLCLKILSGASC 307
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
L KE VFIA+HG GEDG++Q +LE +PYTG G MAS M+KV T
Sbjct: 53 LVKEKFDVVFIALHGKYGEDGSIQGVLELLNIPYTGSGHMASSIAMNKVIT 103
>gi|385814959|ref|YP_005851350.1| D-alanine-d-alanine ligase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|418030215|ref|ZP_12668729.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
gi|325124996|gb|ADY84326.1| D-alanine-d-alanine ligase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354688064|gb|EHE88113.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
bulgaricus CNCM I-1632]
Length = 362
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 161/389 (41%), Gaps = 51/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTP 136
+VGLI GG S+E +S+ SA ++ I D V +I + Y S A Y P
Sbjct: 6 QVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNS--GYVASEADSYKVLEEP 63
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
K + A +L E A +D++FP +HG GEDG +Q + + PFVG
Sbjct: 64 GYMVEKNDKTAN-LSNLIELASR--PELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++++ + + + +LS +V+ +L +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRY--EYEDAKNQKLSYDWVSGQL--GTSN 176
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP+ GSS+G+T V D A+ + DD+V+VE + G TA++
Sbjct: 177 LFVKPSNQGSSVGIT---HVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVL---- 229
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D HPVV ++ + + ++Y KY P + P +
Sbjct: 230 -GND-HPVVSGVGQI---------INADNTWYSYENKYSTESTTTLQIPAQIPAETAEKV 278
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A ++Q AR+D S G ++F ++N + G
Sbjct: 279 QENALKIYQITECSGMARVDSMLRESD----------------GEVIFNELNALPGFTNI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S+ +++ +I A R+
Sbjct: 323 SMYPKLFEEAGISYPDLITRLIRLAEERY 351
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 66/321 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG LQ L P+ G V+A+ MDK T + LA + + K
Sbjct: 91 LFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAVTMDKEFTKI----LAQRAGVPVAK 146
Query: 698 DVRRK----EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V K ED + W ++ +L L VKP+ G S G+ + D + Y +
Sbjct: 147 WVSIKRYEYEDAKNQKLSYDW--VSGQLGTSNLFVKPSNQGSSVGITHVT---DDSNYAE 201
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E ++L+ E V T+
Sbjct: 202 ALAEAF------------------KYDDKVLVEEGIVGTE-------------------- 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
VE V G+ H ++ V + S E K+ + L P +
Sbjct: 224 ----VETAV-----LGNDHPVVSGVGQIINADNTWYSYENKYSTESTTTLQIPAQ--IPA 272
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E +K ++ I + G +R+D+ + +GEV+ E+N +PG T + ++ L E
Sbjct: 273 ETAEKVQENALKIYQITECSGMARVDSMLRESDGEVIFNELNALPGFT--NISMYPKLFE 330
Query: 932 QPPMYPHQFFRKVLDLGSERF 952
+ + +++ L ER+
Sbjct: 331 EAGISYPDLITRLIRLAEERY 351
>gi|116513372|ref|YP_812278.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|122275858|sp|Q04CI2.1|DDL_LACDB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|116092687|gb|ABJ57840.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 362
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 161/389 (41%), Gaps = 51/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTP 136
+VGLI GG S+E +S+ SA ++ I D V +I + Y S A Y P
Sbjct: 6 QVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNS--GYVASEADSYKVLEEP 63
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
K + A +L E A +D++FP +HG GEDG +Q + + PFVG
Sbjct: 64 GYMVEKNDKTAN-LSNLIELASR--PELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++++ + + + +LS +V+ +L +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRY--EYEDAKNQKLSYDWVSGQL--GTSN 176
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP+ GSS+G+T V D A+ + DD+V+VE + G TA++
Sbjct: 177 LFVKPSNQGSSVGIT---HVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVL---- 229
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D HPVV ++ + + ++Y KY P + P +
Sbjct: 230 -GND-HPVVSGVGQI---------INADNTWYSYENKYSTESTTTLQIPAQIPAETAEKV 278
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A ++Q AR+D S G ++F ++N + G
Sbjct: 279 QENALKIYQITECSGMARVDSMLRESD----------------GEVIFNELNALPGFTNI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S+ +++ +I A R+
Sbjct: 323 SMYPKLFEEAGISYPDLITRLIRLAEERY 351
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 66/321 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG LQ L P+ G V+A+ MDK T + LA + + K
Sbjct: 91 LFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAVTMDKEFTKI----LAQRAGVPVAK 146
Query: 698 DVRRK----EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V K ED + W ++ +L L VKP+ G S G+ + D + Y +
Sbjct: 147 WVSIKRYEYEDAKNQKLSYDW--VSGQLGTSNLFVKPSNQGSSVGITHVT---DDSNYAE 201
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E ++L+ E V T+
Sbjct: 202 ALAEAF------------------KYDDKVLVEEGIVGTE-------------------- 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
VE V G+ H ++ V + S E K+ + L P +
Sbjct: 224 ----VETAV-----LGNDHPVVSGVGQIINADNTWYSYENKYSTESTTTLQIPAQ--IPA 272
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E +K ++ I + G +R+D+ + +GEV+ E+N +PG T + ++ L E
Sbjct: 273 ETAEKVQENALKIYQITECSGMARVDSMLRESDGEVIFNELNALPGFT--NISMYPKLFE 330
Query: 932 QPPMYPHQFFRKVLDLGSERF 952
+ + +++ L ER+
Sbjct: 331 EAGISYPDLITRLIRLAEERY 351
>gi|117929360|ref|YP_873911.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
gi|117649823|gb|ABK53925.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
Length = 333
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 39/299 (13%)
Query: 165 DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF 224
D VF +HG GEDG ++E+L+ VP+VG + R AFDK A + G S
Sbjct: 58 DAVFIAMHGSEGEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSI 117
Query: 225 LLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283
+ + +L + ++ G +VVKP R GS++GVT+ V ++ A ++
Sbjct: 118 AFSQTAIR--DLGGHQLLDRCVRRLGLPLVVKPARGGSALGVTI---VREATAFAHALVT 172
Query: 284 -EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF 342
D +VE ++ G T + + V D P L P V++R D +F
Sbjct: 173 CFAYDTVALVEQYVVG----TELAISVVEDDDGTPRALPP----------VEIRPVDGMF 218
Query: 343 NYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFS 402
+Y +Y YH P R + + A Q LGL D +R D V
Sbjct: 219 DYAARYT-AGMTEYHVPARITETARDRAVDVALRAHQALGLRDLSRTD---------VIV 268
Query: 403 SSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
+++ + +L+ + N+ GM TS L A++VG + R ++ A +R P+
Sbjct: 269 TADDE--------VLYLETNVAPGMTPTSLLPMAAAEVGIDLGTLCRDLLVRAATRGPS 319
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 109/300 (36%), Gaps = 63/300 (21%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L + VFIA+HG GEDG L+ LL+ GVPY G ++ DK L
Sbjct: 51 RLTADPPDAVFIAMHGSEGEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQ--- 107
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDI-WHELTSKLQCK---TLCVKPARDGCSTGVARLCC 744
R +T I D+ H+L + + L VKPAR G + GV
Sbjct: 108 -----AAGVAAPRSIAFSQTAIRDLGGHQLLDRCVRRLGLPLVVKPARGGSALGV---TI 159
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
+ T + AL C A+ + + E +V E+ S +
Sbjct: 160 VREATAFAHALVTCF----------AYDTVAL---------VEQYVVGTELAISVVEDDD 200
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
R +P V ++ + ++ G+
Sbjct: 201 GTPR-------------------------ALPPVEIRPVDGMFDYAARYTA--GMTEYHV 233
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
PA I T A D+ AL L SR D V D+ EVL +E N PGMTP+++L
Sbjct: 234 PARITET-ARDRAVDVALRAHQALGLRDLSRTDVIVTADD-EVLYLETNVAPGMTPTSLL 291
>gi|319937485|ref|ZP_08011890.1| VanG2 [Coprobacillus sp. 29_1]
gi|319807325|gb|EFW03934.1| VanG2 [Coprobacillus sp. 29_1]
Length = 353
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 160/381 (41%), Gaps = 52/381 (13%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ ++ GG S+E +SL SA SVL H+ D + I ++ Y + +
Sbjct: 5 IAILFGGHSSEYSVSLESAYSVLCHLDHDKYNIYMIGITKDGKWYHFDGDILDIQNDTWW 64
Query: 140 DFKLESLA-----QGFGSLSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
L + + +H + ++D +FP +HG+ GEDG +Q ++ +P +
Sbjct: 65 QHPLHEVTISPDPTKHALIEMKTDHFILVHIDAIFPILHGKNGEDGTVQGLIALSGIPLI 124
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G + DK A ++ G SF+L + + + +N+ KL S +
Sbjct: 125 GCSVASSALCMDKERAHQIVNHAGIRVPKSFVLTSMQDYQLQKNNFL---KL---SLPLF 178
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP +AGSS G+T +D ++KA D+ +++E +EG +VG
Sbjct: 179 VKPVKAGSSYGITKVTH-LDEIEKAIEFAFT-YDNEILIEENIEG--------FEVGCAV 228
Query: 314 DCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY-LPTQQVAYHTPPRFPIVVINSIR 371
++L G VD + F++ KY L + Q+ H P R + I+
Sbjct: 229 MGTDQLIL---------GRVDEIELSQGFFDFTEKYTLKSSQI--HMPARIDSQIEKRIQ 277
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
E A ++++ LG FAR+D + P + I+F ++N I G S
Sbjct: 278 ETAQMIYKALGCQVFARVDMFLTPEN-----------------EIVFNEVNTIPGFTSHS 320
Query: 432 FLFQQASKVGFSHSNILRTII 452
+G+S NIL +I
Sbjct: 321 RFPSMLQGIGYSFENILDKLI 341
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 22/124 (17%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 693
+F +HG GEDGT+Q L+ G+P G V +S CMDK +NH + VL
Sbjct: 98 IFPILHGKNGEDGTVQGLIALSGIPLIGCSVASSALCMDKERAHQIVNHAGIRVPKSFVL 157
Query: 694 TINKDVR-RKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
T +D + +K + LK + L VKP + G S G+ ++ +++
Sbjct: 158 TSMQDYQLQKNNFLKLSL--------------PLFVKPVKAGSSYGITKVTHLDEIE--- 200
Query: 753 KALE 756
KA+E
Sbjct: 201 KAIE 204
>gi|77747741|ref|NP_635617.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|77761078|ref|YP_241339.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
campestris str. 8004]
Length = 368
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 167/407 (41%), Gaps = 52/407 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY--- 132
R +RVGLI GG SAE +SL SAR++L + ID+ + +S+ + +
Sbjct: 2 RRIRVGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQ-GQWHLSAQESFLLD 60
Query: 133 SNTPADFDFKL--ESLAQGFGSLSEF-----AEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
++ P+ + LA G+ S AE A +D+VFP +HG GEDG +Q +L
Sbjct: 61 ADDPSRIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLL 120
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
N+PFVG+G A DK A + G P ++++ L
Sbjct: 121 RMANLPFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGL 180
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ + A + L D +V+VE + G E
Sbjct: 181 -----PLFVKPANQGSSVGVSQVRSA-EEFSAALELALR-YDHKVLVEAAI-AGREIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL + P + EV + DA ++Y+ KY+ A P
Sbjct: 233 VLG-----NATPQASVCGEVVVH----------DAFYSYQTKYIRDDGAATVIPADIDAH 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ I++ A +Q L AR+D VF ++ G I+ ++N +
Sbjct: 278 TQHRIQQCALQAYQALDCAGMARVD---------VFLCAD--------GRIVINEVNTLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS-YNSVSSH 471
G + S + G + +++ +I A R + Y+SV +H
Sbjct: 321 GFTRISMYPKLWEASGLDYRSLVTRLIELALERHADDGRLYSSVVTH 367
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 110/475 (23%), Positives = 176/475 (37%), Gaps = 144/475 (30%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCS-----SGMDANITD 548
V +IFGG ++E +VSL S N+ LQA + P L+ ID S ++ + D
Sbjct: 6 VGLIFGGKSAEHEVSLQSARNI---LQALDPQRFEPVLI--GIDKQGQWHLSAQESFLLD 60
Query: 549 PDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSW 608
D SR+ LRH+ + A+ P A ++ LR
Sbjct: 61 ADDPSRIA--------LRHSGRGL------AVLP--GAASAQLR---------------- 88
Query: 609 FTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGV 668
+++ LA+ + VF VHG +GEDG+LQ LL +P+ G GV
Sbjct: 89 --------------AVDAEQALAQID--VVFPIVHGTLGEDGSLQGLLRMANLPFVGSGV 132
Query: 669 MASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC- 727
+ S MDK + K V R L P ++ +TL
Sbjct: 133 LGSAVAMDK----------------DMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIA 176
Query: 728 -------VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
VKPA G S GV+++ AE+ + ALE L
Sbjct: 177 QFGLPLFVKPANQGSSVGVSQVRSAEEFSA---ALELAL--------------------- 212
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
+ +++ + EI V+G S+ V V
Sbjct: 213 -----------------------RYDHKVLVEAAIAGREIECAVLGNATPQASVCGEVVV 249
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRI 896
++ S + K+ G A+++ + + RI+ A AL G +R+
Sbjct: 250 HDA--FYSYQTKYIRDDG------AATVIPADIDAHTQHRIQQCALQAYQALDCAGMARV 301
Query: 897 DAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D F+ D G ++I EVNT+PG T + ++ L E + ++++L ER
Sbjct: 302 DVFLCAD-GRIVINEVNTLPGFT--RISMYPKLWEASGLDYRSLVTRLIELALER 353
>gi|421782317|ref|ZP_16218774.1| D-alanine--D-alanine ligase 1 [Serratia plymuthica A30]
gi|407755558|gb|EKF65684.1| D-alanine--D-alanine ligase 1 [Serratia plymuthica A30]
Length = 367
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 164/402 (40%), Gaps = 55/402 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GQWHVNDASNYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAAN-------VDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + + A+ +D+VFP +HG GEDG +Q +L
Sbjct: 63 NPALIALNRSNKNVALIPGQEKQQLIEASSAGALGQLDVVFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK + G P L + N + + ++L
Sbjct: 123 ANMPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTL--TRTNRGK----YGFDQLSE 176
Query: 248 NSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
G + +KP GSS+GV+ V D + L D +V+VE +AI
Sbjct: 177 RLGLPLFIKPANQGSSVGVS---KVQDRAGFDAALALAFSFDHKVLVE---------SAI 224
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VG +C VL E + G + + DA ++Y KY+ Q P
Sbjct: 225 ---VGREIEC--AVLGNDEPQASLCGEIVL--SDAFYSYDTKYINEQGAKVVVPAEIAPE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V + IR+ A F+ L AR+D + P + ++ +IN +
Sbjct: 278 VSDKIRDVALKAFRALECFGLARVDVFLTPDN-----------------NVVINEINTLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
G S + + G S+S ++ +I A R + NS
Sbjct: 321 GFTNISMYPKLWAASGVSYSELITRLIELALERHQQDRALNS 362
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 115/285 (40%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
VF VHG +GEDG+LQ LL +P+ G GV+ S MDK T L LA +T
Sbjct: 101 VVFPIVHGTLGEDGSLQGLLRMANMPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R K + +L+ +L L +KPA G S GV+++ +D + A
Sbjct: 161 LTRTNRGKYG---------FDQLSERLGL-PLFIKPANQGSSVGVSKV---QDRAGFDAA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L +FS H ++L S +
Sbjct: 208 LAL--------AFSFDH----------------------KVLVESAIVGR---------- 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G SL + + ++ S + K+ G + P ++ E
Sbjct: 228 ----EIECAVLGNDEPQASLCGEIVLSDA--FYSYDTKYINEQGAKVVVPAE--IAPEVS 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 280 DKIRDVALKAFRALECFGLARVDVFLTPDN-NVVINEINTLPGFT 323
>gi|156935075|ref|YP_001438991.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894]
gi|156533329|gb|ABU78155.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894]
Length = 366
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 158/402 (39%), Gaps = 55/402 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG++ GG SAE +SL SA++++D I + V ID+ + +++ N
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAED 63
Query: 138 DFDFKLESLAQGFGSLSEFAEH---------LAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
L + + +E +D++FP +HG GEDG +Q +L
Sbjct: 64 PARIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMA 123
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+PFVG+G + DK A + G P L + N ++ V +L
Sbjct: 124 NIPFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRANRQRITFEDVKAQL--- 178
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVL 307
+ VKP GSS+GV+ V D + + L D +VVVE ++ G E VL
Sbjct: 179 GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIK-GREIECAVL 234
Query: 308 --DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
D C +V V +F ++Y KY+ Q P
Sbjct: 235 GNDSPQASTCGEIV-----VSSEF------------YSYDIKYIDDQAARVVVPADIAPD 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 278 VNEKIRAIAIRAFQALECAGLARVDVFLTPDNEVIINEINTLPG--------FTNISMYP 329
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ Q S G + ++ +I A R A+ S
Sbjct: 330 KLWQAS---------GIGYQELITRLIELALERHQADAALKS 362
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R++ I E L VKPA G S GV+++
Sbjct: 158 FITLTRANRQR----------ITFEDVKAQLGLPLFVKPANQGSSVGVSKV 198
>gi|334337571|ref|YP_004542723.1| D-alanine--D-alanine ligase [Isoptericola variabilis 225]
gi|334107939|gb|AEG44829.1| D-alanine--D-alanine ligase [Isoptericola variabilis 225]
Length = 389
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 155/396 (39%), Gaps = 45/396 (11%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDRNLNAYAI 126
R RV L+ GG S E IS +A VL I V R + + + I
Sbjct: 21 RKPRVALLFGGRSGEHAISAATAAGVLGAIDRSKYDVVPVGITREGRWVVAEDSPERWQI 80
Query: 127 SSAQVYSNTPADFDFKLESLAQGFGSLSEF----AEHLAANVDIVFPTIHGRFGEDGGIQ 182
+ ++ T + SL +G +L L VD+VFP +HG +GEDG IQ
Sbjct: 81 TGGRLPEVTDETGGEVVLSLTRGERTLRVLEPGAVPALLGEVDVVFPLLHGPYGEDGTIQ 140
Query: 183 EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
+LE +V +VG G A DK+ L ++ G P +++ + E S
Sbjct: 141 GMLELADVRYVGAGVLASAVGMDKHFMKLVLAGHGLPVGPYTVIR---PRDWERSPKVCA 197
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
++ V VKP RAGSS+G+T + D L A E D +V+VE + G E
Sbjct: 198 QTVETLGLPVFVKPARAGSSLGITRVDDLAD-LPAAVEAAREH-DPKVIVEAAVH-GREI 254
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL G P LP E+ + + A +++ KYL V P
Sbjct: 255 ECAVL--GGRGGAAPRASLPGEIVVD-------HDTHAFYDFEAKYLDEAHVKLECPADL 305
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P + IR A F+ +G +R+D + P ++ +IN
Sbjct: 306 PEHLTEEIRRLAVRTFEAVGAEGLSRVDVFVTPDE-----------------QVVVNEIN 348
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + G S+ ++ +I A R
Sbjct: 349 TMPGFTPYSMYPRMWEASGLSYPELVDELIQLALER 384
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL-NHLADLGVLTIN 696
VF +HG GEDGT+Q +LE V Y G GV+AS MDK L L H +G T
Sbjct: 125 VFPLLHGPYGEDGTIQGMLELADVRYVGAGVLASAVGMDKHFMKLVLAGHGLPVGPYT-- 182
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V R D ++P V T L + VKPAR G S G+ R+ DL V+A
Sbjct: 183 --VIRPRDWERSPKVCAQTVETLGLP---VFVKPARAGSSLGITRVDDLADLPAAVEAAR 237
Query: 757 E 757
E
Sbjct: 238 E 238
>gi|429102011|ref|ZP_19163985.1| D-alanine--D-alanine ligase [Cronobacter turicensis 564]
gi|426288660|emb|CCJ90098.1| D-alanine--D-alanine ligase [Cronobacter turicensis 564]
Length = 366
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 151/366 (41%), Gaps = 46/366 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQ-GQWHVNDASRYLLNAE 62
Query: 135 TPADFDF----KLESLAQGFGSLSEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA K +L G S + E +D++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALHRSEKNVALIPGL-SQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG+G + DK A + G P L N ++ V +L
Sbjct: 122 MANIPFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--PRANRQRITFAEVKAQL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V D + + L D +VVVE ++G
Sbjct: 179 --GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIKGRE----- 228
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
+C VL E + G + V + ++Y KY+ Q P
Sbjct: 229 -------IEC--AVLGNEEPQASTCGEIVVSSE--FYSYDTKYIDDQAARVVVPADIAPD 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 278 VNEKIRAIAVRAFQALECAGLARVDVFLTPENEVIINEINTLPG--------FTNISMYP 329
Query: 426 GMEQTS 431
+ Q S
Sbjct: 330 KLWQAS 335
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 18/111 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGSGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R++ + E+ ++L L VKPA G S GV+++
Sbjct: 158 FITLPRANRQR---------ITFAEVKAQLGL-PLFVKPANQGSSVGVSKV 198
>gi|336055203|ref|YP_004563490.1| D-alanine--D-alanine ligase [Lactobacillus kefiranofaciens ZW3]
gi|333958580|gb|AEG41388.1| D-alanine--D-alanine ligase [Lactobacillus kefiranofaciens ZW3]
Length = 360
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 160/390 (41%), Gaps = 55/390 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI-DRNLNAYAISSAQVYSNTPA 137
+VGLI GG S+E +S+ S R++ I D V +I + A S +V + PA
Sbjct: 6 QVGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWITNEGYFADEKESFKVLED-PA 64
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ K +L E +D+ FP +HG GEDG +Q + N PFVG
Sbjct: 65 -YQVKNPHKVNNISNLIELTN--LPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDV 121
Query: 198 RACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
A DK + + G +I++ F + ++ N +L+ V KL + +
Sbjct: 122 LAAAVTMDKEFTKILAQRVGVPVADWISIKRF--EYNDKNNDKLNYEKVAEKLGRD---M 176
Query: 253 VVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
VKP+ GSS+G VT A +LK+A DD+V+VE + G TA++
Sbjct: 177 FVKPSNQGSSVGVNHVTSAAEYAAALKEAF-----KYDDKVLVEETVPGTEVETAVL--- 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ K + + Y KY P P +I++
Sbjct: 229 --GND-KPIVAGVGQI---------TNAKGSFYTYENKYADNSTSKLQIPADLPQEIIDT 276
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A +++ ARID P G ++ T++N + G
Sbjct: 277 VRTNARKVYEVTECSGMARIDSMLTPG-----------------GKVVLTEVNALPGFTN 319
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G +S+++ +I RF
Sbjct: 320 ISMYPKLFEEAGIKYSDLITRLIEAGMERF 349
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 131/333 (39%), Gaps = 59/333 (17%)
Query: 622 HSINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
++I+ I+L + VF VHG +GEDG LQ L P+ G V+A+ MDK T
Sbjct: 74 NNISNLIELTNLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAVTMDKEFT 133
Query: 681 SLALNHLADLGVLTIN-KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 739
+ +GV + ++R E K + ++ KL + + VKP+ G S GV
Sbjct: 134 KILAQR---VGVPVADWISIKRFEYNDKNNDKLNYEKVAEKL-GRDMFVKPSNQGSSVGV 189
Query: 740 ARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS 799
+ A + Y AL+E
Sbjct: 190 NHVTSAAE---YAAALKEAF---------------------------------------- 206
Query: 800 QSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI 859
K D+++ + E+ V+G + + + +T G + E K+ +
Sbjct: 207 ----KYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQIT-NAKGSFYTYENKYADNSTS 261
Query: 860 NLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L P + + E +D + + + G +RID+ + G+V++ EVN +PG T
Sbjct: 262 KLQIP--ADLPQEIIDTVRTNARKVYEVTECSGMARIDSML-TPGGKVVLTEVNALPGFT 318
Query: 920 PSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ ++ L E+ + ++++ G ERF
Sbjct: 319 --NISMYPKLFEEAGIKYSDLITRLIEAGMERF 349
>gi|194334287|ref|YP_002016147.1| D-alanyl-alanine synthetase A [Prosthecochloris aestuarii DSM 271]
gi|229485974|sp|B4S8W3.1|DDL_PROA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|194312105|gb|ACF46500.1| D-alanine/D-alanine ligase [Prosthecochloris aestuarii DSM 271]
Length = 360
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 165/386 (42%), Gaps = 65/386 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-------- 130
RV LI GG S E IS+ SAR++ +HI + + Y+ + + +AQ
Sbjct: 5 RVALIFGGQSTEHEISIISARAIANHIDTEAYELYPIYVGHDGAWFKGETAQKVLDLDMP 64
Query: 131 -VYSNTPAD-FDFKLESLAQGFGS-----LSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
+ +NT AD +L ++ F L +F+E +D+ P IHG GEDG IQ
Sbjct: 65 AMLANTSADTIRERLREIS--FSDPRNRFLFDFSEE---GIDVALPIIHGSTGEDGKIQG 119
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L+ ++VP+ G G A DK + G P ++ ++ + V+
Sbjct: 120 LLDMFSVPYTGCGVHASAMTMDKETTKICAEHAGLHIAPYTTIR--KLRYQQDPQQVVSV 177
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
L+ + VKP GSSIG+T + + +L+KA +D +V++E +E G
Sbjct: 178 ILEEFTLPFFVKPASQGSSIGITKVHRPEELAAALEKAF-----MVDTKVLIEKTIE-GR 231
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL G D PV +P EVE +++ KY+ + + H P
Sbjct: 232 EIEVAVL----GNDS-PVASVPGEVE----------PGGDFYDFTDKYI-NGKASLHIPA 275
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R P V+ + A ++ L +R+D +F+ +T G I+ +
Sbjct: 276 RLPEEVLQKVSTEALKAYRALECRGMSRVD-FFIEHAT---------------GKIILNE 319
Query: 421 INLISGMEQTSF--LFQQASKVGFSH 444
IN + G S + AS + FS
Sbjct: 320 INTVPGFTGISMYPMMMDASGIDFSQ 345
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 169/429 (39%), Gaps = 110/429 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNV--WLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
V +IFGG ++E ++S++S + ++ +A+ E+ P + G D ++
Sbjct: 6 VALIFGGQSTEHEISIISARAIANHIDTEAY---ELYPIYV--------GHDGAWFKGET 54
Query: 552 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 611
+ +V+ L +L +T+ + + + I S RN+ + D E G
Sbjct: 55 AQKVL-DLDMPAMLANTSADTIRERLREIS------FSDPRNRFLFDFSE--------EG 99
Query: 612 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
D+A LP+ +HG GEDG +Q LL+ VPYTG GV AS
Sbjct: 100 IDVA--LPI---------------------IHGSTGEDGKIQGLLDMFSVPYTGCGVHAS 136
Query: 672 KTCMDKVATSLALNHLA-DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
MDK T + H + T + +R ++D + V I E T VKP
Sbjct: 137 AMTMDKETTKICAEHAGLHIAPYTTIRKLRYQQDPQQVVSV-ILEEFTLP-----FFVKP 190
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790
A G S G+ ++ E+L ALE+ + V
Sbjct: 191 ASQGSSIGITKVHRPEELAA---ALEKAFM-----------------------------V 218
Query: 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 850
+T +++ + EI V V+G + S+ P V+ GD
Sbjct: 219 DT---------------KVLIEKTIEGREIEVAVLGNDSPVASV-PG-EVEPGGDFYDFT 261
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
+K+ G P + + E L K AL+ G SR+D F+ G++++
Sbjct: 262 DKYINGKASLHIP---ARLPEEVLQKVSTEALKAYRALECRGMSRVDFFIEHATGKIILN 318
Query: 911 EVNTVPGMT 919
E+NTVPG T
Sbjct: 319 EINTVPGFT 327
>gi|406897787|gb|EKD41624.1| hypothetical protein ACD_73C00614G0001 [uncultured bacterium]
Length = 297
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 122/286 (42%), Gaps = 66/286 (23%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F+A+HG GEDGT+Q LLE +PYTG V AS C DKVAT + L+H G++T
Sbjct: 52 FLALHGRYGEDGTIQGLLEWFKIPYTGSSVKASAICFDKVATKVFLSH---AGMVTPAYR 108
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
V + + LK+ + + + VKP +G + G++R+ +L AL E
Sbjct: 109 VFNQGEDLKSFVANFDLHF-------PVIVKPNSEGSTIGISRVFEKGELE---GALNEA 158
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
L + D+++ Q
Sbjct: 159 L-------------------------------QYDKVILVEQYIQGR------------- 174
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
E+TVGV+ +P + V+ G K+ G L P P + T+ L +
Sbjct: 175 EVTVGVL-----EGQALPVIEVRPKGGFYDFASKYTKGATEYLVPAPLDVALTQKLQRLG 229
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
++ +L+ +G R D +N +N E +EVNT+PGMT +++L
Sbjct: 230 EK---AFQSLECQGAVRADFMINSNN-EPYFLEVNTIPGMTETSLL 271
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 133/299 (44%), Gaps = 50/299 (16%)
Query: 160 LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFI 219
L VD F +HGR+GEDG IQ +LE + +P+ G+ +A FDK + +S G +
Sbjct: 44 LTTKVDAAFLALHGRYGEDGTIQGLLEWFKIPYTGSSVKASAICFDKVATKVFLSHAGMV 103
Query: 220 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAK 279
T P++ + N+ E FV N D + V+VKP GS+IG++ + + +
Sbjct: 104 T-PAYRV----FNQGEDLKSFVAN-FDLHF-PVIVKPNSEGSTIGISRVF----EKGELE 152
Query: 280 GIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE 337
G + E + D ++VE +++ G E T VL+ + LP ++VR
Sbjct: 153 GALNEALQYDKVILVEQYIQ-GREVTVGVLEGQA---------LPV---------IEVRP 193
Query: 338 KDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397
K +++ KY Y P + + + QRLG F ++ +
Sbjct: 194 KGGFYDFASKY-TKGATEYLVPAPLDVALTQKL--------QRLGEKAFQSLECQGAVRA 244
Query: 398 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 456
+ +S+ Y F ++N I GM +TS L + A +G S ++ TI+ A
Sbjct: 245 DFMINSNNEPY---------FLEVNTIPGMTETSLLPKAAQALGISFEDLCETILKGAA 294
>gi|255020016|ref|ZP_05292089.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756]
gi|254970545|gb|EET28034.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756]
Length = 298
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 125/305 (40%), Gaps = 46/305 (15%)
Query: 158 EHLA-ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQ 216
E LA + + VF HG+FGEDG +Q LE +P+ G+G A A DK+ +
Sbjct: 32 EQLAQSGAEFVFNVCHGQFGEDGVLQACLEASGLPYTGSGVLASALAMDKWRSKRLWQAA 91
Query: 217 GFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV---AYGVID 273
G T LQ V ++L V VKP RAGSS+G++ A G+ +
Sbjct: 92 GLPTTRGQWLQREHVTGGSPCGQSSADELHIARWPVFVKPNRAGSSLGISRVENAAGLAE 151
Query: 274 SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSV 333
++ KA +D ++VE ++G IV +G P+V+ P
Sbjct: 152 AMAKAF-----AVDSEILVEEAVDGLEATVGIV----AGRTLPPIVIRP----------- 191
Query: 334 DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 393
A ++Y KYL Y P P ++E A F+ LG D+ R+D F
Sbjct: 192 ----HRAFYDYEAKYL-ADDTEYLLPSGLPTATERRLQELALQAFRELGGRDWGRVD--F 244
Query: 394 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIG 453
L + G I ++N + GM S + A +G++ + + I+
Sbjct: 245 LVDAE---------------GGIHLLELNAVPGMTDHSLVPMAARALGWTMTKLCLEIVS 289
Query: 454 HACSR 458
A R
Sbjct: 290 TAQRR 294
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 120/301 (39%), Gaps = 69/301 (22%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+LA+ VF HG GEDG LQ+ LEA G+PYTG GV+AS MDK S L A
Sbjct: 33 QLAQSGAEFVFNVCHGQFGEDGVLQACLEASGLPYTGSGVLASALAMDKW-RSKRLWQAA 91
Query: 689 DLGVLTINKDVRRKEDLLKTPI----VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
L T + ++R+ +P D H + + VKP R G S G++R+
Sbjct: 92 GLPT-TRGQWLQREHVTGGSPCGQSSADELH-----IARWPVFVKPNRAGSSLGISRV-- 143
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
N+ A M + EIL+ E
Sbjct: 144 -------------------ENAAGLAEAMAKAFAVDSEILVEEAV--------------- 169
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
D L E TVG++ +P + ++ E K+ L P
Sbjct: 170 --DGL---------EATVGIVAG-----RTLPPIVIRPHRAFYDYEAKYLADDTEYLLP- 212
Query: 865 PASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
S + T A ++ Q + L A L + R+D V+ + G + ++E+N VPGMT ++
Sbjct: 213 --SGLPT-ATERRLQELALQAFRELGGRDWGRVDFLVDAEGG-IHLLELNAVPGMTDHSL 268
Query: 924 L 924
+
Sbjct: 269 V 269
>gi|13471742|ref|NP_103309.1| D-alanyl-alanine synthetase A [Mesorhizobium loti MAFF303099]
gi|39931184|sp|Q98JS0.1|DDLA_RHILO RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|14022486|dbj|BAB49095.1| D-alanine-D-alanine ligase A [Mesorhizobium loti MAFF303099]
Length = 357
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 158/388 (40%), Gaps = 48/388 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN---- 134
RV ++ GG SAE +S SA +VL I V I R+ S++ ++
Sbjct: 6 RVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSEAGADGAGA 65
Query: 135 -TPADFDFKLESLAQGFGSLSEFAEH--LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
P D ++ L G G L ++ VD+VFP +HG FGEDG +Q E +V
Sbjct: 66 QVPED-GVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADVA 124
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSG 250
+VG G A A DK A + + G S +L+G + E++
Sbjct: 125 YVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVGSFQEIAGALGL-------- 176
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
KP R GSS GV+ + D ++A L D + ++E F++ G E VL+
Sbjct: 177 PFFAKPARQGSSFGVSKVHDR-DGFEQAVETALR-YDSKALIEEFVD-GREIECSVLERA 233
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G + + G + +K + Y KY + P P V+
Sbjct: 234 DG-----------SLTVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVART 282
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
E A+ F+ LG AR+D +FL + G++L ++N + G
Sbjct: 283 SEMAARAFRALGCEAMARVD-FFLRAD----------------GSLLVNEVNTLPGFTDI 325
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G +S ++ +I HA +R
Sbjct: 326 SMYAKALAAAGIGYSKVIDVLIEHALAR 353
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 115/294 (39%), Gaps = 80/294 (27%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG++Q E V Y G G++AS MDK +A L + G+
Sbjct: 99 VVFPVLHGPFGEDGSVQGYAEVADVAYVGCGILASAAAMDK---DVAKRLLREAGLA--- 152
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V R +LK V + E+ L KPAR G S GV+++ D + +A+E
Sbjct: 153 --VARSVTVLKGD-VGSFQEIAGALGLPFFA-KPARQGSSFGVSKV---HDRDGFEQAVE 205
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
L S+A + E FV+ EI
Sbjct: 206 TAL-----RYDSKA--------------LIEEFVDGREI--------------------- 225
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDIL--------SLEEKFQGGTGINLTPP---P 865
+C + S+TV G+I+ + E K+ G + P P
Sbjct: 226 ----------ECSVLERADGSLTVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVP 275
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
A +++ + + AL E +R+D F+ D G +L+ EVNT+PG T
Sbjct: 276 ADVVA-----RTSEMAARAFRALGCEAMARVDFFLRAD-GSLLVNEVNTLPGFT 323
>gi|238752552|ref|ZP_04614026.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
gi|238709227|gb|EEQ01471.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
Length = 366
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 158/391 (40%), Gaps = 51/391 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA+++++ I D V ID+ + ++ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVEAIDTDKFDVMLLGIDKQ-GKWHVNDASSYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAAN-------VDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + +AA+ +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALISLNHSNRNVALIPGQENQQLIAADNAAVLAQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+G + DK + G P L S N+ S VT KL
Sbjct: 123 ANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRS--NKDNYSFEQVTEKL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ +KP GSS+GV+ + ++A + + D +V+VE +AI
Sbjct: 179 -GLPLFIKPANQGSSVGVSKVRNAAE-YQQAVALAFD-FDHKVLVE---------SAI-- 224
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
VG +C V+ + G V + D ++Y KY+ P
Sbjct: 225 -VGREIEC--AVMGNDSPQASVCGEVVI--SDEFYSYDTKYINESGAQVIIPAAIDTDAS 279
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ IR A F L AR+D + P + T++ +IN + G
Sbjct: 280 DRIRAVALAAFSALECRGMARVDVFLTPDN-----------------TVIINEINTLPGF 322
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G + ++ T+I A R
Sbjct: 323 TNISMYPKLWRATGIGSTELITTLIELAVDR 353
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 117/282 (41%), Gaps = 60/282 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRD-AGLNIAPFIT 160
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R +D + ++T KL L +KPA G S GV+++ A + Y +A+
Sbjct: 161 LTRSNKDNYS------FEQVTEKLGLP-LFIKPANQGSSVGVSKVRNAAE---YQQAVAL 210
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+F H ++L S +
Sbjct: 211 --------AFDFDH----------------------KVLVESAIVGR------------- 227
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V+G S+ V + S + S + K+ +G + P A + T+A D+
Sbjct: 228 -EIECAVMGNDSPQASVCGEVVI--SDEFYSYDTKYINESGAQVIIPAA--IDTDASDRI 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 283 RAVALAAFSALECRGMARVDVFLTPDN-TVIINEINTLPGFT 323
>gi|169334858|ref|ZP_02862051.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM
17244]
gi|169257596|gb|EDS71562.1| D-ala D-ala ligase N-terminal domain protein [Anaerofustis
stercorihominis DSM 17244]
Length = 351
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 161/384 (41%), Gaps = 57/384 (14%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS-SAQVYSNTPADFD 140
++ GG S E +SL SA SV++ I D ++ + R+ + Y + N D
Sbjct: 14 VLFGGNSPEYDVSLKSAYSVINSINKDLYDIKLIGVSRSGDFYLYEGDIEKIRNDTWHLD 73
Query: 141 FK-LESLAQGFGS-----LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
++L G S + + E + ++D FP +HG+ GEDG IQ +LE +P +G
Sbjct: 74 KNCYDALISGNTSEHGIVVFKNDELIIIHIDAAFPILHGKNGEDGTIQGLLELGGIPIIG 133
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G + DKY A + G I VP +L +N+ +N ++ + V
Sbjct: 134 CGVLSSALCMDKYRAHKLVESMG-IKVPKSVLINKSIND-------FSNHIEYLGFPIFV 185
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF- 313
KP +AGSS G+T D L KA E DD+VV+E ++G +VG
Sbjct: 186 KPLKAGSSFGITKVEDKKD-LFKAVDKAFE-YDDKVVLEENIDG--------FEVGCAVL 235
Query: 314 -DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY-LPTQQVAYHTPPRFPIVVINSIR 371
+ P++ E+EL F+Y KY L T ++ H P R I+
Sbjct: 236 GNEKPIIGEVDEIELS----------KGFFDYVEKYNLKTSKI--HMPARITEENAKVIK 283
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
E A +++ L DFARID + T+ I+F ++N I G S
Sbjct: 284 ETALKIYKILDCKDFARIDMFI-----------------TKDRDIVFNEVNTIPGFTAHS 326
Query: 432 FLFQQASKVGFSHSNILRTIIGHA 455
+G I+ II A
Sbjct: 327 RFPNMLKGIGMDFDEIVNKIISLA 350
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 131/333 (39%), Gaps = 78/333 (23%)
Query: 600 VEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATV------FIAVHGGIGEDGTLQ 653
+E ++ +W + D L ++ I + K ++ + F +HG GEDGT+Q
Sbjct: 62 IEKIRNDTWHLDKNCYDALISGNTSEHGIVVFKNDELIIIHIDAAFPILHGKNGEDGTIQ 121
Query: 654 SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713
LLE G+P G GV++S CMDK + + + + K V L+ I D
Sbjct: 122 GLLELGGIPIIGCGVLSSALCMDKYRAHKLVESMG----IKVPKSV-----LINKSINDF 172
Query: 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV-KALE---ECLLRIPPNSFSR 769
+ + + + VKP + G S G+ ++ +DL V KA E + +L + F
Sbjct: 173 SNHI--EYLGFPIFVKPLKAGSSFGITKVEDKKDLFKAVDKAFEYDDKVVLEENIDGFEV 230
Query: 770 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG 829
G + N P I E DEI S KG +VE K
Sbjct: 231 --GCAVLGNEKPII------GEVDEIELS-------------KGFFDYVE---KYNLKTS 266
Query: 830 SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889
+H MP+ +T A ++ AL I L
Sbjct: 267 KIH--MPA----------------------RITEENAKVIKETALK--------IYKILD 294
Query: 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
+ F+RID F+ D +++ EVNT+PG T +
Sbjct: 295 CKDFARIDMFITKDR-DIVFNEVNTIPGFTAHS 326
>gi|163855004|ref|YP_001629302.1| D-alanine--D-alanine ligase [Bordetella petrii DSM 12804]
gi|190359114|sp|A9I4V9.1|DDL_BORPD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|163258732|emb|CAP41031.1| D-alanine-D-alanine ligase [Bordetella petrii]
Length = 326
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 162/399 (40%), Gaps = 89/399 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S + V A+ SA V ++
Sbjct: 17 KVGVLYGGRSAERDVSLMSGKGVHQ---------------------ALLSAGVDAHL--- 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G +L+E A AA D VF +HGR+GEDG +Q LE +P+ G+G
Sbjct: 53 FD-------TGERTLAELA---AAGFDRVFIALHGRYGEDGTLQGALELLGLPYTGSGPM 102
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A + DK + G T P+F EV +++ V ++L +++KP
Sbjct: 103 ASSLSMDKIMTKRVWLQHGLRT-PAF-----EVLDAQAELRTVPDRL---GLPLILKPPH 153
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G+T G D +K+ + DD V+ E F+ G E T VL G+ PV
Sbjct: 154 EGSTVGITKVAGYSD-MKEGYAQAAK-FDDEVLAEQFI-AGRELTVAVLGTGAAAHALPV 210
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+++ ++Y KY + + Y P P V + + A +
Sbjct: 211 --------------IEIVAPGGNYDYEHKYF-SDETQYFCPADLPDAVAAEVADLAVRAY 255
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG + RID F+ + + W + N GM S + A
Sbjct: 256 RALGCAGWGRID--FMLDAD-----------NRPW----LLEANTSPGMTSHSLVPMAAK 298
Query: 439 KVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSS 477
+G S++ + +I+ A + H P R+S
Sbjct: 299 AIGMSYAELCVSIVSEAACKV-----------HSPARNS 326
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 117/301 (38%), Gaps = 74/301 (24%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 686
+LA VFIA+HG GEDGTLQ LE G+PYTG G MAS MDK+ T + L H
Sbjct: 62 ELAAAGFDRVFIALHGRYGEDGTLQGALELLGLPYTGSGPMASSLSMDKIMTKRVWLQHG 121
Query: 687 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
VL ++R D L P++ +KP +G + G+ ++
Sbjct: 122 LRTPAFEVLDAQAELRTVPDRLGLPLI----------------LKPPHEGSTVGITKVAG 165
Query: 745 AEDLTV-YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
D+ Y +A + F+ DE+L
Sbjct: 166 YSDMKEGYAQAAK-----------------------------FD-----DEVLAEQFIAG 191
Query: 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 863
+ E+TV V+G + H+L P + + G E K+
Sbjct: 192 R--------------ELTVAVLGTGAAAHAL-PVIEIVAPGGNYDYEHKYFSDETQYFC- 235
Query: 864 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
PA + A + + AL G+ RID ++ DN ++E NT PGMT ++
Sbjct: 236 -PADLPDAVAAEVADLAVRAY-RALGCAGWGRIDFMLDADN-RPWLLEANTSPGMTSHSL 292
Query: 924 L 924
+
Sbjct: 293 V 293
>gi|227529650|ref|ZP_03959699.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540]
gi|227350440|gb|EEJ40731.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540]
Length = 426
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/440 (24%), Positives = 184/440 (41%), Gaps = 65/440 (14%)
Query: 35 LKLKKSACRYATKTTSLGVEGARASAEVLEDQTMAKEARG-GRVLRVGLICGGPSAERGI 93
+ L+ S KT S + +R + V+ + K + L + L+ GG S+E +
Sbjct: 11 VNLRLSYSNLVRKTNSWYTKDSRKT--VINKNKLNKVVHAMTKKLNIALLFGGNSSEHDV 68
Query: 94 SLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSNTPADF----DFKLESLAQ 148
S SA ++ D + D V + ++ S++Q +++ D +++ +L Q
Sbjct: 69 SKRSAHNIYDALDKDKYNVSLFMFTKDGILLGNSASQRIFNGDDEDQVVQEEYQKMNLNQ 128
Query: 149 GFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYD 208
+ E A VD+ FP IHG GEDG +Q + + P+VG+ A AFDK
Sbjct: 129 PLAPIMALNEMKA--VDLFFPVIHGNLGEDGTVQGLFKLLKKPYVGSNIAASAMAFDKDL 186
Query: 209 ASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV-VKPTRAGSSIGV-- 265
+++ G P ++ + N ++ W K++ G + VKP + GSS+G+
Sbjct: 187 TKKILTEAGIRNTPYVVV--TPENRADYP-W---AKVEEKIGDLAFVKPAKQGSSVGIHK 240
Query: 266 -----TVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
+ D+ K I++E GID VE+ + G HPV
Sbjct: 241 VTNAEEYEKALDDAFKYDYKILVEQGIDHPQEVEISILGNE---------------HPVA 285
Query: 320 LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
G+V V E D+ +NY K++ V + P + P + I A ++
Sbjct: 286 --------SKLGAVRVPEGDSFYNYENKFVDASGVVFELPVKLPEYLTEEITSMALKAYK 337
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
LG+ ARID FL S +V E +T G FT+I+L M + S
Sbjct: 338 VLGMKGMARID--FLVDSNNVPYLGEP---NTLPG---FTNISLYPQMWEVS-------- 381
Query: 440 VGFSHSNILRTIIGHACSRF 459
G +S+++ +I F
Sbjct: 382 -GIGYSDLIDRLIQLGLEEF 400
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 124/315 (39%), Gaps = 61/315 (19%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG +GEDGT+Q L + PY G + AS DK L L + G+
Sbjct: 146 FPVIHGNLGEDGTVQGLFKLLKKPYVGSNIAASAMAFDK---DLTKKILTEAGIRNTPYV 202
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
V E+ P W ++ K+ VKPA+ G S G+ ++ AE+ Y KAL++
Sbjct: 203 VVTPENRADYP----WAKVEEKI-GDLAFVKPAKQGSSVGIHKVTNAEE---YEKALDDA 254
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
F + + L+ +G
Sbjct: 255 --------FKYDYKI-----------------------------------LVEQGIDHPQ 271
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
E+ + ++G + S + +V V E + E KF +G+ P + E L +
Sbjct: 272 EVEISILGNEHPVASKLGAVRVPEGDSFYNYENKFVDASGVVFELP---VKLPEYLTEEI 328
Query: 879 QRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 937
+ L A L ++G +RID V+ +N L E NT+PG T + ++ + E +
Sbjct: 329 TSMALKAYKVLGMKGMARIDFLVDSNNVPYL-GEPNTLPGFT--NISLYPQMWEVSGIGY 385
Query: 938 HQFFRKVLDLGSERF 952
+++ LG E F
Sbjct: 386 SDLIDRLIQLGLEEF 400
>gi|134299650|ref|YP_001113146.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1]
gi|190359127|sp|A4J5G8.1|DDL_DESRM RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|134052350|gb|ABO50321.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1]
Length = 312
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 158/383 (41%), Gaps = 75/383 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+G++CGG SAER +SL S +V A+ +A
Sbjct: 3 LRIGVLCGGRSAEREVSLRSGEAVYQ---------------------ALMAAGYNDVVKI 41
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAAN-VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
D + L E L N + + F +HG++GEDG IQ +LE ++P+ G+G
Sbjct: 42 DVGYDL-------------VEQLKGNEIQVAFLALHGKYGEDGTIQGLLEMLDIPYTGSG 88
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
A A +K A+ ++ K I P+F ++ EV + L + + VVK
Sbjct: 89 VLASALAINKI-ATKKIFKMEGIPTPAFSVITKKEVEDKSLQEAAL-RAIKEVGVPAVVK 146
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GS+IG+T + V + + +A L+ D V+VE F+ G+E TA VL S
Sbjct: 147 ANTQGSTIGITFVH-VKEKMAEAIESALK-YDQDVLVEQFV-AGTEVTASVLGNNS---- 199
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P + L +++ +++Y+ KY P + PPR P + I+E A
Sbjct: 200 ------PEALPL-----IEITSVTGVYDYQSKYTPGMS-DHIIPPRLPQDIQEKIKELAI 247
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F LG RID F+ ++ ++N + GM TS
Sbjct: 248 KSFLSLGCRGLGRID--FIIRDNQPYA----------------LEVNTLPGMTATSLFPD 289
Query: 436 QASKVGFSHSNILRTIIGHACSR 458
A+ G S + +I A +
Sbjct: 290 AANYAGISFPELTDRLIKLALEQ 312
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 14/71 (19%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATV-FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
G+D+ ++L K N+ V F+A+HG GEDGT+Q LLE +PYTG GV+
Sbjct: 44 GYDLVEQL-------------KGNEIQVAFLALHGKYGEDGTIQGLLEMLDIPYTGSGVL 90
Query: 670 ASKTCMDKVAT 680
AS ++K+AT
Sbjct: 91 ASALAINKIAT 101
>gi|396583949|ref|ZP_10484454.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp.
ICM47]
gi|395548494|gb|EJG15748.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp.
ICM47]
Length = 345
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 151/365 (41%), Gaps = 82/365 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V +I GG + ER +S+ S R V N+ A A Y +D
Sbjct: 4 KVLIISGGLTHERDVSVRSGRRV-----------------ANILAQA-----GYEVVISD 41
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D L G++ FA D+++P +HG GEDG +Q LE +PFVG+ S
Sbjct: 42 VDASLA------GAIESFAP------DVIWPLVHGSIGEDGSLQSFLESVGIPFVGSSSV 89
Query: 199 ACRQAFDKYDA-----SLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN-SGKV 252
A +K A S ++ G++T+P + + +L V + L+ + S V
Sbjct: 90 QSMLASNKPTAKALLGSAGLATPGWVTLPQAIFR-------QLGASNVLSALEGSVSFPV 142
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
V+KPT GS++G++ A+ + G R++VE +E G + V+D+ G
Sbjct: 143 VIKPTDGGSALGISTAHDAKQLRRSMVDAFAYG--QRLMVEQRIE-GRDVAVSVVDLEGG 199
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
PV L P E+ D ++Y +Y T + Y P RF + ++
Sbjct: 200 ----PVALPPVEIA----------TDDGRYDYDARYT-TDESEYFVPARFSPEALADMQA 244
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A LGL D +R+D + E GT F D N+ GM TS
Sbjct: 245 AAVEAHTTLGLRDLSRMD-----------------FVVDEDGTCWFIDANVAPGMTDTSL 287
Query: 433 LFQQA 437
L Q A
Sbjct: 288 LPQAA 292
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTINKDV 699
VHG IGEDG+LQS LE+ G+P+ G + S +K L LA G +T+ + +
Sbjct: 62 VHGSIGEDGSLQSFLESVGIPFVGSSSVQSMLASNKPTAKALLGSAGLATPGWVTLPQAI 121
Query: 700 RRK 702
R+
Sbjct: 122 FRQ 124
>gi|424871040|ref|ZP_18294702.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393166741|gb|EJC66788.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 358
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 160/388 (41%), Gaps = 49/388 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+ ++ GG SAE +S+ SA +V+ ++ + +I R S TP+
Sbjct: 8 LRIAVLFGGRSAEHEVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSSFEDGILATPS 67
Query: 138 DFDFKLESLAQGFGSL----SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
++ + G G + + A H A VDI+FP +HG++GEDG +Q E VP
Sbjct: 68 S-GTEISLVPGGRGRVLVIPAHGAPHDLAKVDILFPVLHGQYGEDGSVQGAAEVARVPLA 126
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KV 252
G G A DK A + G + ++E + + L+ G +
Sbjct: 127 GCGILGSAAALDKDIAKRLLRAAGLPVA-----RAVTIHEGAVPSL---AALEGELGLPL 178
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR-VVVELFLEGGS-EFTAIVLDVG 310
+KP R GSS+GV + S + A + DR ++ E F+ G EF+ + G
Sbjct: 179 FIKPARQGSSVGVAKVHA---SQEFAPALTEAFRHDRTLLAEEFVRGREIEFSVLEDTAG 235
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
F P ++P E ++Y KY+ + A P P + ++
Sbjct: 236 ELFVSRPGEIVPA-------------ESHGFYSYDAKYIDEKGAALKVPAELPQEIETAM 282
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R+ AS F+ +G ARID +FL T+ L +IN I G
Sbjct: 283 RDVASKAFRAVGCDGMARID-FFL----------------TDDMRFLVNEINTIPGFTHI 325
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G +++ I+ ++ H +R
Sbjct: 326 SMYSKAMAASGVTYAEIIDRLVDHGLAR 353
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 110/282 (39%), Gaps = 58/282 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG++Q E VP G G++ S +DK +A L G L + +
Sbjct: 100 LFPVLHGQYGEDGSVQGAAEVARVPLAGCGILGSAAALDK---DIAKRLLRAAG-LPVAR 155
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V E + + L +L L +KPAR G S GVA++ +++ + AL E
Sbjct: 156 AVTIHEGAVPS-----LAALEGELGLP-LFIKPARQGSSVGVAKVHASQE---FAPALTE 206
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
L+ E FV EI FS
Sbjct: 207 AFRH-------------------DRTLLAEEFVRGREIEFSVLEDTAG------------ 235
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
E+ V G+ ++P+ ES S + K+ G L P + + E
Sbjct: 236 -ELFVSRPGE------IVPA----ESHGFYSYDAKYIDEKGAALKVP--AELPQEIETAM 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ A+ +G +RID F+ D+ L+ E+NT+PG T
Sbjct: 283 RDVASKAFRAVGCDGMARIDFFLT-DDMRFLVNEINTIPGFT 323
>gi|328947388|ref|YP_004364725.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
gi|328447712|gb|AEB13428.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
Length = 376
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 119/302 (39%), Gaps = 38/302 (12%)
Query: 165 DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF 224
D+VFP +HG +GEDG +Q V E VPFVG G A A DK + + G VP
Sbjct: 96 DVVFPVLHGTYGEDGTVQGVFEMAGVPFVGCGVLASSAAMDKETTKILLKNAGIPVVPYM 155
Query: 225 LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA-------YGVIDSLKK 277
+ S++N S L + + ++ + VKP AGSS G ++A + ++++
Sbjct: 156 CISRSQINSSSLYDKLIEEAIEKLEFPLFVKPCAAGSSDGASLARNKRELSFALMEAFSW 215
Query: 278 AKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE 337
+++E D VE + G S + S DC L+ G ++
Sbjct: 216 DNKVLIEKAIDAREVECSVTGNS------VTATSESDC---------TLLKAYGPGEIVP 260
Query: 338 KDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397
K ++Y KY P + IRE A + + +R+D +F+
Sbjct: 261 KHDFYDYDAKYNDPDGAELKIPALLSDDKLELIRETAKKAYSVINASGLSRVD-FFVDRK 319
Query: 398 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
T G I +IN I G + S + G +S ++ ++
Sbjct: 320 T---------------GEIYLNEINTIPGFTKISMFPKMCDADGLEYSELIDYLLKEGIE 364
Query: 458 RF 459
F
Sbjct: 365 NF 366
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 119/284 (41%), Gaps = 46/284 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q + E GVP+ G GV+AS MDK T + L + G+ +
Sbjct: 97 VVFPVLHGTYGEDGTVQGVFEMAGVPFVGCGVLASSAAMDKETTKILLK---NAGIPVVP 153
Query: 697 KDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+ + + + D + E KL+ L VKP G S G +
Sbjct: 154 YMCISRSQINSSSLYDKLIEEAIEKLEF-PLFVKPCAAGSSDGAS--------------- 197
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
+ N + ++E + ++LI E ++ E+ S GNS
Sbjct: 198 ------LARNKRELSFALMEAFSWDNKVLI-EKAIDAREVECSVT------------GNS 238
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
+T C + + P V + D + K+ G L P +++S + L+
Sbjct: 239 ----VTATSESDCTLLKAYGPGEIVPKH-DFYDYDAKYNDPDGAELKIP--ALLSDDKLE 291
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
++ + + + G SR+D FV+ GE+ + E+NT+PG T
Sbjct: 292 LIRETAKKAYSVINASGLSRVDFFVDRKTGEIYLNEINTIPGFT 335
>gi|424884729|ref|ZP_18308340.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|393176491|gb|EJC76532.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM2012]
Length = 358
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 155/394 (39%), Gaps = 59/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYA------IS 127
LR+ ++ GG SAE +S+ SA +V+ ++ + ++ R L+ + S
Sbjct: 8 LRIAVLFGGRSAEHEVSILSATNVMAALEPEKYDAVPIFVTREGQWLLSGFGDGRLATPS 67
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
S P L A G A H +DI+FP +HG GEDG +Q +E
Sbjct: 68 SGTEICLVPGGRGRMLAMPAHG-------APHELPRIDILFPVLHGPHGEDGSVQGAVEV 120
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL-QGSEVNESELSNWFVTNKLD 246
VP G G A DK A + G + + +G+ + + L +
Sbjct: 121 ARVPLAGCGILGSAAALDKDIAKRLLQAAGLPVARAVTIHEGAAPSLAALEDELGL---- 176
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP R GSS+GV + + G D ++ E F+ G +++
Sbjct: 177 ----PLFVKPARQGSSVGVAKVHASQEFAAALAGGFRH--DRTLLGEEFIAGREIEFSVL 230
Query: 307 LDV-GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
DV G F P ++P E +NY KY+ A P P+
Sbjct: 231 EDVDGELFVSRPGEIVPA-------------ESHGFYNYDAKYVDENGAALKVPAELPLE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V ++R+ A+ F+ +G AR+D +FL S H + ++N I
Sbjct: 278 VETAMRDMAAQAFRAVGCDGMARVD-FFLTSDMH----------------FVINELNTIP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G S + + G S++ I+ ++ H +RF
Sbjct: 321 GFTDISMYSKALAASGVSYAEIIDRLVEHGMARF 354
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 125/317 (39%), Gaps = 64/317 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG++Q +E VP G G++ S +DK +A L G L + +
Sbjct: 100 LFPVLHGPHGEDGSVQGAVEVARVPLAGCGILGSAAALDK---DIAKRLLQAAG-LPVAR 155
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V E + + + EL L VKPAR G S GVA++ +++ +
Sbjct: 156 AVTIHEGAAPS-LAALEDELG-----LPLFVKPARQGSSVGVAKVHASQEFAAALA---- 205
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
F L+ E F+ EI F S ++ D ++ SR
Sbjct: 206 -------GGFRH-----------DRTLLGEEFIAGREIEF---SVLEDVDGELFV--SRP 242
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL--D 875
EI +P+ ES + + K+ G L P + E D
Sbjct: 243 GEI--------------VPA----ESHGFYNYDAKYVDENGAALKVPAELPLEVETAMRD 284
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 935
Q A+ +G +R+D F+ D +I E+NT+PG T + +AL+
Sbjct: 285 MAAQAF----RAVGCDGMARVDFFLTSDM-HFVINELNTIPGFT-DISMYSKALAASGVS 338
Query: 936 YPHQFFRKVLDLGSERF 952
Y + ++++ G RF
Sbjct: 339 YA-EIIDRLVEHGMARF 354
>gi|422821681|ref|ZP_16869874.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK353]
gi|324990632|gb|EGC22568.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK353]
Length = 353
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/401 (23%), Positives = 162/401 (40%), Gaps = 85/401 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 10 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 69
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 70 LMTNATVDMSRKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 117
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNS 249
P+VG + A DK + G VP L+ G ++ E +
Sbjct: 118 PYVGCNILSSGLAMDKITTKRVLESAGIAQVPYVALVDGEDLEEKIQEIEEKL------T 171
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V KP+ GSS+G++ + E +E A LD+
Sbjct: 172 YPVFTKPSNMGSSVGISKS----------------------------ENRAELRA-SLDL 202
Query: 310 GSGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHT 358
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++
Sbjct: 203 AFKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDI 261
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P + V++ +R+ A F+ LG +R D ++ TE G +
Sbjct: 262 PAKISEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-----------------TEDGQVFL 304
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G ++ +++ ++G A F
Sbjct: 305 NELNTMPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAF 345
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 684
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L
Sbjct: 89 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITTKRVL 140
>gi|339499606|ref|YP_004697641.1| D-alanine--D-alanine ligase [Spirochaeta caldaria DSM 7334]
gi|338833955|gb|AEJ19133.1| D-alanine--D-alanine ligase [Spirochaeta caldaria DSM 7334]
Length = 376
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 163/411 (39%), Gaps = 71/411 (17%)
Query: 80 VGLICGGPSAERGISLNSARSV---LD-----------------HIQGDDLLVRCYYIDR 119
V +I GG S E +SL SA SV LD ++Q DD L RC
Sbjct: 8 VAVIYGGRSGEHEVSLISAASVVRNLDTTKYKVLLIGIDKQGGWYLQKDDELERCLAGAA 67
Query: 120 NLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDG 179
L + +V + + + A G A +VD+VFP +HG FGEDG
Sbjct: 68 ALEIHTDVQRRVSAVCGGETKETFSTPATG-----------ALSVDVVFPVLHGTFGEDG 116
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
IQ +LE NVP+VG G DK A + G VP ++ + SE
Sbjct: 117 TIQGLLEMVNVPYVGAGVLGSAIGMDKEIAKILWIHAGLPVVPFISVRKLDWAVSERRKQ 176
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLE 297
+ + VKP+ AGSS+G + A SL+KA + E + DD+V++E F+
Sbjct: 177 IIERAERDFMYPLFVKPSCAGSSVGASKAQDR-QSLEKA---VAEALLWDDKVLIEPFI- 231
Query: 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357
A ++ + P P E+ V E ++Y KY+ A
Sbjct: 232 -----PAREVECSVTGNERPEAYTPGEI-------VPTHE---FYDYEAKYIDPDGAALL 276
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P +IRE A ++ L +RID +F+ T IL
Sbjct: 277 IPADLSENEFKTIREIAVKAYRAAELSGLSRID-FFVRKDTR---------------EIL 320
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF--PNLASYN 466
++N + G S + G +++++L +I A R+ N SY+
Sbjct: 321 LNEVNTMPGFTTISMFPKMCEASGLAYADLLDRLIKLAIERYDQKNSRSYS 371
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 127/322 (39%), Gaps = 70/322 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
VF +HG GEDGT+Q LLE VPY G GV+ S MDK + H L + +++
Sbjct: 104 VFPVLHGTFGEDGTIQGLLEMVNVPYVGAGVLGSAIGMDKEIAKILWIHAGLPVVPFISV 163
Query: 696 NK-----DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
K RRK+ + E + L VKP+ G S G ++ A+D
Sbjct: 164 RKLDWAVSERRKQII----------ERAERDFMYPLFVKPSCAGSSVGASK---AQDRQS 210
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810
KA+ E LL + ++ EPF+ E+ S
Sbjct: 211 LEKAVAEALLW-------------------DDKVLIEPFIPAREVECSVT---------- 241
Query: 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870
GN R T G I +P + + E K+ G L P + +S
Sbjct: 242 --GNERPEAYTPGEI---------VP------THEFYDYEAKYIDPDGAALLIP--ADLS 282
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
++ A +L G SRID FV D E+L+ EVNT+PG T T+ + +
Sbjct: 283 ENEFKTIREIAVKAYRAAELSGLSRIDFFVRKDTREILLNEVNTMPGFT--TISMFPKMC 340
Query: 931 EQPPMYPHQFFRKVLDLGSERF 952
E + +++ L ER+
Sbjct: 341 EASGLAYADLLDRLIKLAIERY 362
>gi|188989640|ref|YP_001901650.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
campestris str. B100]
gi|167731400|emb|CAP49575.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv.
campestris]
Length = 368
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 166/407 (40%), Gaps = 52/407 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY--- 132
R +RVGLI GG SAE +SL SAR++L + ID+ + +S+ + +
Sbjct: 2 RRIRVGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQ-GQWHLSAPESFLLD 60
Query: 133 SNTPADFDFKL--ESLAQGFGSLSEF-----AEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
++ P+ + LA G+ S AE A +D+VFP +HG GEDG +Q +L
Sbjct: 61 ADDPSRIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLL 120
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
N+PFVG+G A DK A + G P ++++ L
Sbjct: 121 RMANLPFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGL 180
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ + A + L D +V+VE + G E
Sbjct: 181 -----PLFVKPANQGSSVGVSQVRSA-EEFSAALELALR-YDHKVLVEAAI-AGREIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL + P + EV + DA ++Y KY+ A P
Sbjct: 233 VLG-----NATPQASVCGEVVVH----------DAFYSYETKYIRDDGAATVIPADIDAH 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ I++ A +Q L AR+D VF ++ G I+ ++N +
Sbjct: 278 TQHRIQQCALQAYQALDCAGMARVD---------VFLCAD--------GRIVINEVNTLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS-YNSVSSH 471
G + S + G + +++ +I A R + Y+SV +H
Sbjct: 321 GFTRISMYPKLWEASGLDYRSLVTRLIELALERHADDGRLYSSVVTH 367
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 111/475 (23%), Positives = 176/475 (37%), Gaps = 144/475 (30%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCS-----SGMDANITD 548
V +IFGG ++E +VSL S N+ LQA + P L+ ID S ++ + D
Sbjct: 6 VGLIFGGKSAEHEVSLQSARNI---LQALDPQRFEPVLI--GIDKQGQWHLSAPESFLLD 60
Query: 549 PDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSW 608
D SR+ LRH+ + A+ P A ++ LR
Sbjct: 61 ADDPSRIA--------LRHSGRGL------AVLP--GAASAQLR---------------- 88
Query: 609 FTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGV 668
+++ LA+ + VF VHG +GEDG+LQ LL +P+ G GV
Sbjct: 89 --------------AVDAEQALAQID--VVFPIVHGTLGEDGSLQGLLRMANLPFVGSGV 132
Query: 669 MASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC- 727
+ S MDK + K V R L P ++ +TL
Sbjct: 133 LGSAVAMDK----------------DMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIA 176
Query: 728 -------VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
VKPA G S GV+++ AE+ + ALE L
Sbjct: 177 QFGLPLFVKPANQGSSVGVSQVRSAEEFSA---ALELAL--------------------- 212
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
+ +++ + EI V+G S+ V V
Sbjct: 213 -----------------------RYDHKVLVEAAIAGREIECAVLGNATPQASVCGEVVV 249
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRI 896
++ S E K+ G A+++ + + RI+ A AL G +R+
Sbjct: 250 HDA--FYSYETKYIRDDG------AATVIPADIDAHTQHRIQQCALQAYQALDCAGMARV 301
Query: 897 DAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D F+ D G ++I EVNT+PG T + ++ L E + ++++L ER
Sbjct: 302 DVFLCAD-GRIVINEVNTLPGFT--RISMYPKLWEASGLDYRSLVTRLIELALER 353
>gi|406927423|gb|EKD63459.1| hypothetical protein ACD_51C00276G0001 [uncultured bacterium]
Length = 355
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/389 (26%), Positives = 162/389 (41%), Gaps = 58/389 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L++G+I GG S E +SL SA +V+ + N + Y I + +N
Sbjct: 4 LKIGIIFGGRSGEHEVSLVSASNVIKAL--------------NTDKYEIHLIGITTNGEW 49
Query: 138 DF-DFKLESLAQG--FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
F + LE+L +G +G+ E +D++FP +HG +GEDG IQ +LE VP+VG
Sbjct: 50 IFGEESLEALKKGTVYGAKKENVMKNLQALDVIFPVLHGPYGEDGTIQGLLEIAGVPYVG 109
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
G A + DK + G VP FL + E N + + L+ +
Sbjct: 110 CGVMASSVSMDKLMTKAVWKQSGLPQVPYVGFLRKEWETNREMI----IKKILNELKYPM 165
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
VKP GSS+G++ A D KGI L DR +V +E G E I L
Sbjct: 166 FVKPANMGSSVGISKAK---DKDGLIKGIELAVAFDRRIV---VEQGVEAREIEL----- 214
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
VL EV++ G + V +++ KY+ + + R P + S +E
Sbjct: 215 -----AVLGNDEVQVAEVGEIIV--GGEFYDFNDKYVDGKSTS-----RVPADLTPSQKE 262
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A Q L F +DG + S +F ++ G +IN I G S
Sbjct: 263 EA----QELATSAFKAVDGAGM-SRVDLFLDKKS-------GKFFLNEINTIPGFTSISM 310
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPN 461
+ G S+ ++ ++ A RF +
Sbjct: 311 YPKMWQASGLSYEALIDRLVELAIERFKD 339
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 133/321 (41%), Gaps = 69/321 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL-----ALNHLADLG 691
+F +HG GEDGT+Q LLE GVPY G GVMAS MDK+ T L + +G
Sbjct: 81 VIFPVLHGPYGEDGTIQGLLEIAGVPYVGCGVMASSVSMDKLMTKAVWKQSGLPQVPYVG 140
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
L + R + I I +EL + VKPA G S G+++ A+D
Sbjct: 141 FLRKEWETNR-----EMIIKKILNELKY-----PMFVKPANMGSSVGISK---AKDKDGL 187
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
+K +E + +F R ++ E VE EI L
Sbjct: 188 IKGIELAV------AFDRR-------------IVVEQGVEAREI------------ELAV 216
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
GN E+ V +G+ + G+ +K+ G + P ++
Sbjct: 217 LGND---EVQVAEVGE------------IIVGGEFYDFNDKYVDGKSTSRVPAD---LTP 258
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
++ ++ A+ G SR+D F++ +G+ + E+NT+PG T ++ ++ + +
Sbjct: 259 SQKEEAQELATSAFKAVDGAGMSRVDLFLDKKSGKFFLNEINTIPGFT--SISMYPKMWQ 316
Query: 932 QPPMYPHQFFRKVLDLGSERF 952
+ ++++L ERF
Sbjct: 317 ASGLSYEALIDRLVELAIERF 337
>gi|328949926|ref|YP_004367261.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM
14884]
gi|328450250|gb|AEB11151.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM
14884]
Length = 324
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 145/365 (39%), Gaps = 62/365 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+ LI GG S E +SL SAR VL+ + L R L A +A
Sbjct: 4 LRILLIAGGRSGEHEVSLASARGVLEAMPHPTDLAVIAKDGRWLTGTAARAA-------- 55
Query: 138 DFDFKLESLAQGFGSLSE--FAEHLAAN-VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
L G E F L+ + D+ FP +HGR+GEDG IQ LE +P+VG
Sbjct: 56 --------LEAGRAQRGEHPFPPPLSWHRYDVAFPLLHGRWGEDGTIQGFLEMLGLPYVG 107
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G A DK ++ G VP L +G + E P S
Sbjct: 108 AGVGAAALCMDKELTKRTLAHAGIPVVPWVSLWRGEGLPEL------------PFSPPYF 155
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI---DDRVVVELFLEGGSEFTAIVLDVG 310
VKP GSS+G++ ++A G LE DDRV+VE LEG E +L
Sbjct: 156 VKPANTGSSVGISKV-----RTREALGPALEEAFRWDDRVLVEQGLEGVRELEVALLG-- 208
Query: 311 SGFDCHPVVLLPTEVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
+ + SV +VR + ++Y KY P + P V
Sbjct: 209 ---------------NVTAEASVVGEVRYQSEFYDYATKYTPG-RAELLIPAPVDADVAR 252
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
++E A ++ LG+ AR+D + P + T G T T ++ + SG+E
Sbjct: 253 RLQEVARTAYRLLGVRGLARVDFFLAPDGALYLNELNTMPGFTP--TSMYPKLWQASGLE 310
Query: 429 QTSFL 433
+ L
Sbjct: 311 YEALL 315
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 66/285 (23%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG GEDGT+Q LE G+PY G GV A+ CMDK T L H V ++
Sbjct: 81 FPLLHGRWGEDGTIQGFLEMLGLPYVGAGVGAAALCMDKELTKRTLAHAGIPVVPWVS-- 138
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
+ R E L + P VKPA G S G++++ E L ALEE
Sbjct: 139 LWRGEGLPELPF------------SPPYFVKPANTGSSVGISKVRTREALG---PALEEA 183
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
F D +L +G
Sbjct: 184 ------------------------------FRWDDRVLVE-------------QGLEGVR 200
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
E+ V ++G + S++ V+ + K+ G L P P + + + +
Sbjct: 201 ELEVALLGNVTAEASVVGE--VRYQSEFYDYATKYTPGRAELLIPAP---VDADVARRLQ 255
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
+ L + G +R+D F+ D G + + E+NT+PG TP+++
Sbjct: 256 EVARTAYRLLGVRGLARVDFFLAPD-GALYLNELNTMPGFTPTSM 299
>gi|429092520|ref|ZP_19155148.1| D-alanine--D-alanine ligase [Cronobacter dublinensis 1210]
gi|426742719|emb|CCJ81261.1| D-alanine--D-alanine ligase [Cronobacter dublinensis 1210]
Length = 366
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 163/401 (40%), Gaps = 53/401 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I + V ID+ + ++ A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQ-GQWHVNDASRYLLNAD 62
Query: 135 TPADFDF----KLESLAQGFGS---LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA K +L G + + +D++FP +HG GEDG +Q +L
Sbjct: 63 NPARIALHRSEKNVALIPGQSAQQLIDSDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK A + G P L + N ++ V +L
Sbjct: 123 ANIPFVGAGVLGSAVSMDKDVAKRLLRDAGLAVAPFITL--TRANRQRITFAEVKAQL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ V D + + L D +VVVE ++G
Sbjct: 179 -GLPLFVKPANQGSSVGVS---KVNDEAQYHAAVALAFEFDHKVVVETGIQGRE------ 228
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
+C VL + + G + V + ++Y KY+ Q P +
Sbjct: 229 ------IEC--AVLGNEDPQASTCGEIVVNSE--FYSYDTKYIDDQAARVVVPADIAPEI 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
IR A FQ L AR+D + P + + + T G FT+I++
Sbjct: 279 NEKIRAIAVRAFQALECAGLARVDVFLRPDNEVIINEINTLPG--------FTNISMYPK 330
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ Q S G + ++ +I A +R A+ S
Sbjct: 331 LWQAS---------GIGYQELITRLIELALARHQADAALKS 362
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 18/111 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G GV+ S MDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANIPFVGAGVLGSAVSMDK---DVAKRLLRDAGLAVAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+T+ + R++ + E+ ++L L VKPA G S GV+++
Sbjct: 158 FITLTRANRQRI---------TFAEVKAQLGL-PLFVKPANQGSSVGVSKV 198
>gi|343522668|ref|ZP_08759634.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp. oral
taxon 175 str. F0384]
gi|343402077|gb|EGV14583.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp. oral
taxon 175 str. F0384]
Length = 378
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 158/398 (39%), Gaps = 51/398 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI----SSAQVYS 133
LRV ++ GG S E IS +A VL I D V I + ++ ++
Sbjct: 9 LRVAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGQWLLVEDDPAALELSD 68
Query: 134 NTPADFDFKLESLAQG----------FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
N P E L +G L + VD+V P +HG +GEDG IQ
Sbjct: 69 NRPP-VTITAEGLGRGRLTAPLGGGELTVLGPTGPEILGRVDVVLPLLHGPYGEDGTIQG 127
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+LE +P+VG G A DK + + G T P ++ +
Sbjct: 128 MLEMMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACR 187
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII--LEGIDDRVVVELFLEGGSE 301
L + + VKP RAGSS+G++ +D + G I +D +V+VE + G E
Sbjct: 188 SL---TYPLFVKPARAGSSLGIS----KVDRPEDLAGAIEAARAVDPKVLVESGIV-GRE 239
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL G G D P V P E+ + QG+ + ++Y KYL VA P
Sbjct: 240 VEVAVLQ-GRGDDA-PRVAEPGEIAMDASQGAGE------FYDYETKYLAHDAVAMVCPA 291
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R + + + A+ F+ LG AR+D +FL T+ G + +
Sbjct: 292 RIGPEARDLLMDTAARAFEALGCEGLARVD-FFL----------------TDAGEAVVNE 334
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S G ++ ++ +I A +R
Sbjct: 335 INTMPGFTPFSMYPYMWQVSGLGYTELVSELIELAVAR 372
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 125/305 (40%), Gaps = 66/305 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q +LE G+PY G GV+AS MDK T + L G+ T
Sbjct: 111 VLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 167
Query: 698 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
V + P I++ LT L VKPAR G S G++++ EDL ++A
Sbjct: 168 VVVGPHAWKRDPEAILEACRSLTYP-----LFVKPARAGSSLGISKVDRPEDLAGAIEA- 221
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
+RA P++L+ V + + Q +A R+ G
Sbjct: 222 ------------ARAVD--------PKVLVESGIVGREVEVAVLQGRGDDAPRVAEPG-- 259
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI + + +G+ E K+ + + P + + EA D
Sbjct: 260 ---EIAMD---------------ASQGAGEFYDYETKYLAHDAVAMVCP--ARIGPEARD 299
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 935
AL EG +R+D F+ D GE ++ E+NT+PG TP + M
Sbjct: 300 LLMDTAARAFEALGCEGLARVDFFLT-DAGEAVVNEINTMPGFTPFS------------M 346
Query: 936 YPHQF 940
YP+ +
Sbjct: 347 YPYMW 351
>gi|300811464|ref|ZP_07091958.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300497537|gb|EFK32565.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 362
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 160/389 (41%), Gaps = 51/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTP 136
+VGLI GG S+E +S+ SA ++ I D V +I + Y S A Y P
Sbjct: 6 QVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNS--GYVASEADSYKVLEEP 63
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
K + A +L E A +D++FP +HG GEDG +Q + + PFVG
Sbjct: 64 GYMVEKNDKTAN-LSNLIELASR--PELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++++ + + + +LS +V+ +L +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRY--EYEDAKNQKLSYDWVSGQL--GTSN 176
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP+ GSS+G+T V D A+ + DD+V+VE + G TA++
Sbjct: 177 LFVKPSNQGSSVGIT---HVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVL---- 229
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D HPVV + + + ++Y KY P + P +
Sbjct: 230 -GND-HPVVSGVGRI---------INADNTWYSYENKYSTESTTTLQIPAQIPAETAEKV 278
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A ++Q AR+D S G ++F ++N + G
Sbjct: 279 QENALKIYQVTECSGMARVDSMLRESD----------------GEVIFNELNALPGFTNI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S+ +++ +I A R+
Sbjct: 323 SMYPKLFEEAGISYPDLITRLIRLAEERY 351
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 66/321 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG LQ L P+ G V+A+ MDK T + LA + + K
Sbjct: 91 LFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAVTMDKEFTKI----LAQRAGVPVAK 146
Query: 698 DVRRK----EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V K ED + W ++ +L L VKP+ G S G+ + D + Y +
Sbjct: 147 WVSIKRYEYEDAKNQKLSYDW--VSGQLGTSNLFVKPSNQGSSVGITHVT---DDSNYAE 201
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E ++L+ E V T+
Sbjct: 202 ALAEAF------------------KYDDKVLVEEGIVGTE-------------------- 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
VE V G+ H ++ V + S E K+ + L P +
Sbjct: 224 ----VETAV-----LGNDHPVVSGVGRIINADNTWYSYENKYSTESTTTLQIPAQ--IPA 272
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E +K ++ I + G +R+D+ + +GEV+ E+N +PG T + ++ L E
Sbjct: 273 ETAEKVQENALKIYQVTECSGMARVDSMLRESDGEVIFNELNALPGFT--NISMYPKLFE 330
Query: 932 QPPMYPHQFFRKVLDLGSERF 952
+ + +++ L ER+
Sbjct: 331 EAGISYPDLITRLIRLAEERY 351
>gi|424881990|ref|ZP_18305622.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WU95]
gi|392518353|gb|EIW43085.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WU95]
Length = 358
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 159/394 (40%), Gaps = 61/394 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYAISSAQVYS 133
LR+ ++ GG SAE +S+ SA +V+D ++ + +I R L+++ +S
Sbjct: 8 LRIAVLFGGRSAEHEVSVLSATNVMDVLKPEKYDAVPVFITREGQWLLSSFEDGILATHS 67
Query: 134 N------TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+ P L A G A H A +DI+FP +HG GEDG +Q V E
Sbjct: 68 SGTEICLVPGGRGRMLAIPAHG-------APHELARIDILFPVLHGPHGEDGSVQGVAEV 120
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL-QGSEVNESELSNWFVTNKLD 246
VP G G A DK A + G + + QG+ + + L
Sbjct: 121 ARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARAVTIHQGAAPSLAALEGELGL---- 176
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR-VVVELFLEGGS-EFTA 304
+ +KP R GSS+GV + S + A + DR ++ E F+ G EF+
Sbjct: 177 ----PLFIKPARQGSSVGVAKVHA---SQEFAPALTEAFRHDRTLLAEEFVRGREIEFSV 229
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
+ G F P ++P E ++Y KY+ + A P P
Sbjct: 230 LEDAAGELFVSRPGEIVPA-------------ESHGFYSYDAKYIDEKGAALKVPAELPQ 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V ++R+ A+ F+ +G AR+D +FL TE L +IN I
Sbjct: 277 EVEAAMRDVAAKAFRAVGCDGMARVD-FFL----------------TEDMQFLVNEINTI 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G S + + G +++ I+ ++ H +R
Sbjct: 320 PGFTDISMYSKAMAASGVTYAEIIGRLVDHGLAR 353
>gi|256851798|ref|ZP_05557186.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN]
gi|260661940|ref|ZP_05862850.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN]
gi|297205420|ref|ZP_06922816.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16]
gi|256615756|gb|EEU20945.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN]
gi|260547409|gb|EEX23389.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN]
gi|297149998|gb|EFH30295.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16]
Length = 361
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 165/387 (42%), Gaps = 50/387 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVGLI GG S+E +S+ S ++ + I + V ++ ++ ++ ++ + P
Sbjct: 6 RVGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPT- 64
Query: 139 FDFKLESLAQGFGSLSEFAEHLA--ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
+ +++ ++S F E LA +D+ FP +HG GEDG IQ + PFVG
Sbjct: 65 --YTIKN-PHKLANVSNF-EQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++ + F + ++ N S+L +V+ KL +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVADWVAIKRF--EYNDKNNSKLDYNYVSKKLGTD--- 175
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+ VKP+ GSS+G++ D L DD+V+VE ++G TA
Sbjct: 176 LFVKPSNQGSSVGISHVKSEADYLPALAEAF--KYDDKVLVEEAIDGTEVETA------- 226
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
VL ++ + G + + K + ++Y+ KY + P P ++ +R
Sbjct: 227 -------VLGNDDIIVSGVGQI-INAKGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVR 278
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A +++ ARID L +S H ++F ++N + G S
Sbjct: 279 SNAEKIYRATECSGMARIDS-MLRTSDH---------------EVIFNELNALPGFTNIS 322
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSR 458
+ + G +++++ +I A R
Sbjct: 323 MYPKLFEEAGIKYTDLISRLIELAVER 349
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 163/458 (35%), Gaps = 115/458 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG++SE +VS++SG N++ N +V P L +S D S
Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIY-NAIDKEKYDVYPIWLTKDNYFASLED---------S 56
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ VW P + P + A S+ Q+ N
Sbjct: 57 KKVWDDPTYTIKN---------------PHKLANVSNFE-QLAN---------------- 84
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
LP F VHG IGEDG +Q P+ G V+A+
Sbjct: 85 ----LP--------------EMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733
MDK T + L A + V R + + +D + SK L VKP+
Sbjct: 127 TMDKEFTKI-LAQRAGVPVADWVAIKRFEYNDKNNSKLD--YNYVSKKLGTDLFVKPSNQ 183
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S G++ + D Y+ AL E
Sbjct: 184 GSSVGISHVKSEAD---YLPALAEAF---------------------------------- 206
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 853
K D+++ + E+ V+G + S + + + G S + K+
Sbjct: 207 ----------KYDDKVLVEEAIDGTEVETAVLGNDDIIVSGVGQI-INAKGSFYSYKNKY 255
Query: 854 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
+ L P + + E ++K + E I A + G +RID+ + + EV+ E+N
Sbjct: 256 DDSSTTTLQIP--ADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSDHEVIFNELN 313
Query: 914 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
+PG T + ++ L E+ + ++++L ER
Sbjct: 314 ALPGFT--NISMYPKLFEEAGIKYTDLISRLIELAVER 349
>gi|134102567|ref|YP_001108228.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL
2338]
gi|291007062|ref|ZP_06565035.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL
2338]
gi|133915190|emb|CAM05303.1| D-alanylalanine synthetase [Saccharopolyspora erythraea NRRL 2338]
Length = 362
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/406 (25%), Positives = 162/406 (39%), Gaps = 67/406 (16%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAI 126
R RV ++ GG S E GIS SA SVL H+ D V I + + A I
Sbjct: 4 RKTRVAVVFGGRSTEHGISCVSAGSVLAHLDRDRFEVVPVGITKEGAWVLAGDDPEALEI 63
Query: 127 SSAQVYSNT-------PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDG 179
+ T P D L L G G + ++VD+VFP +HG FGEDG
Sbjct: 64 QDRRTPEITSGKAVALPGDPTRDLMYLEPGRGG------EVLSSVDVVFPVLHGAFGEDG 117
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
IQ +LE VP+ G G + A DK ++ +G +L+ ++S L
Sbjct: 118 TIQGLLEMAGVPYAGPGVLSSAVAMDKEYTKKLLAAEGLAVGTYEVLR---RDQSTLDQ- 173
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFL 296
+ + V VKP RAGSS+G+T + D++ +A+ D +V++E +
Sbjct: 174 ---QQRERLGLPVFVKPARAGSSLGITKVTDHADLDDAIAEAR-----RTDPKVIIESAV 225
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
G E VL+ G VE + V ++Y KYL +
Sbjct: 226 T-GREVECGVLEFPDG-----------RVEASLPAELRVTGDSTWYDYESKYL-DDVTEF 272
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P + I +RE A F+ L AR+D +F+ G +
Sbjct: 273 DIPAKIGDDAIERMREAAVTAFRALECQGLARVD-FFVADD----------------GEL 315
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+ ++N + G S + ++ G + +L T+I A +R L
Sbjct: 316 IVNEVNTMPGFTAISLYPRMWAQTGVDYPTLLSTLIETAIARGTGL 361
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTI 695
VF +HG GEDGT+Q LLE GVPY GPGV++S MDK T LA LA +G +
Sbjct: 105 VFPVLHGAFGEDGTIQGLLEMAGVPYAGPGVLSSAVAMDKEYTKKLLAAEGLA-VGTYEV 163
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+RR + L + +L VKPAR G S G+ ++ DL
Sbjct: 164 ---LRRDQSTLD-------QQQRERLGLPVF-VKPARAGSSLGITKVTDHADL 205
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PA I +A+++ ++ AL+ +G +R+D FV D+GE+++ EVNT+PG T
Sbjct: 275 PAKI-GDDAIERMREAAVTAFRALECQGLARVDFFV-ADDGELIVNEVNTMPGFT 327
>gi|229818288|ref|ZP_04448569.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784158|gb|EEP20272.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 377
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 121/296 (40%), Gaps = 32/296 (10%)
Query: 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITV 221
++D VFP +HG +GEDG +Q +LE VP+VG G A DK+ + ++ G T
Sbjct: 104 GHIDAVFPVLHGVYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKIVLNAAGIPTA 163
Query: 222 PSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI 281
P ++ + + KL + + VKP+RAGSS GVT D + +
Sbjct: 164 PGIMVDARHATGESVYDEVKKAKL---AYPLFVKPSRAGSSFGVTKVEQADDEQAQIAAL 220
Query: 282 ILEGI-----DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR 336
D +V+VE ++ E VL G + P P E+ L + D
Sbjct: 221 EAAVAEAGKHDWKVLVEQGID-AREIECAVLCAAPGDE--PEASWPGEIVLDHRDQGD-- 275
Query: 337 EKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396
D +++ KY+ + P P+ V+ +R+ A F + +R+D + P
Sbjct: 276 --DQFYDFDSKYMDSSASHVEVPANLPVSVLEDVRDVARRAFAAVDGAGLSRVDTFVTPD 333
Query: 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
GT++ +IN + G S + G ++ ++ +I
Sbjct: 334 -----------------GTVMVNEINTMPGFTPISMYPKAWDASGIGYTELITRLI 372
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 108 AVFPVLHGVYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKIVLNAAGIPTAPGIM 167
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R ++ E+ L VKP+R G S GV ++ A+D
Sbjct: 168 VDARHATGE------SVYDEVKKAKLAYPLFVKPSRAGSSFGVTKVEQADD 212
>gi|73542661|ref|YP_297181.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
gi|123624027|sp|Q46WZ6.1|DDL_RALEJ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|72120074|gb|AAZ62337.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
Length = 327
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 162/380 (42%), Gaps = 84/380 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL +Q R ++A+
Sbjct: 16 KVGVLYGGRSAEREISLMSGSGVLAALQ-----------SRGVDAHG------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD +S+ AE AA D VF +HGR+GEDG +Q +LE+ VP+ G+G
Sbjct: 52 FDPATQSV----------AELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGVPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK A+ + ++ P F + ++ + + V + P ++VKP R
Sbjct: 102 ASALAMDK-QATKRLWMTHDLSTPRFAMLYADTD----FDAVVADLGLP----LIVKPAR 152
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT A + ++ +KA +D+ V+ E F++ G+E T ++ G+ +
Sbjct: 153 EGSSIGLSKVTDASQMREAFEKAA-----ALDNDVIAETFID-GAELTCPLVGEGATAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + D+ ++Y+ KY T Y P V +++ A
Sbjct: 207 LPV--------------IRIVAPDSNYDYQNKYF-TDDTQYLCPSGLSAEVEREVQQLAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
++ LG +AR D V ++ G ++N GM S +
Sbjct: 252 QAYRVLGCRGWARAD---------VMLRAD--------GKPFLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSNILRTIIGHA 455
A G S+ + + ++ A
Sbjct: 295 AARAAGISYEDFVMQVVAAA 314
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 124/313 (39%), Gaps = 80/313 (25%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
GFD P S+ E LA VFIA+HG GEDGT+Q LLE GVPYTG GV+A
Sbjct: 51 GFD-----PATQSVAE---LAAAGFDRVFIALHGRYGEDGTMQGLLEQLGVPYTGSGVLA 102
Query: 671 SKTCMDKVATS-LALNH---LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 726
S MDK AT L + H +L + D L P++
Sbjct: 103 SALAMDKQATKRLWMTHDLSTPRFAMLYADTDFDAVVADLGLPLI--------------- 147
Query: 727 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786
VKPAR+G S G++++ A + +F +A + +I
Sbjct: 148 -VKPAREGSSIGLSKVTDASQMR---------------EAFEKAAAL-------DNDVIA 184
Query: 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 846
E F++ E+T ++G+ G+ +P + +
Sbjct: 185 ETFIDG-------------------------AELTCPLVGE-GATAEALPVIRIVAPDSN 218
Query: 847 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 906
+ K+ L P S +S E + +Q L G++R D + D G+
Sbjct: 219 YDYQNKYFTDDTQYLCP---SGLSAEVEREVQQLAVQAYRVLGCRGWARADVMLRAD-GK 274
Query: 907 VLIIEVNTVPGMT 919
++E+NT PGMT
Sbjct: 275 PFLLEMNTSPGMT 287
>gi|422844561|ref|ZP_16891271.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325685279|gb|EGD27393.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 362
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 160/389 (41%), Gaps = 51/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTP 136
+VGLI GG S+E +S+ SA ++ I D V +I + Y S A Y P
Sbjct: 6 QVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNS--GYVASEADSYKVLEEP 63
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
K + A +L E A +D++FP +HG GEDG +Q + + PFVG
Sbjct: 64 GYMVEKTDKTAN-LSNLIELASR--PELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++++ + + + +LS +V+ +L +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRY--EYEDAKNQKLSYDWVSGQL--GTSN 176
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP+ GSS+G+T V D A+ + DD+V+VE + G TA++
Sbjct: 177 LFVKPSNQGSSVGIT---HVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVL---- 229
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D HPVV + + + ++Y KY P + P +
Sbjct: 230 -GND-HPVVSGVGRI---------INADNTWYSYENKYSTESTTTLQIPAQIPAETAEKV 278
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A ++Q ARID S G ++F ++N + G
Sbjct: 279 QENALKIYQITECSGMARIDSMLRESD----------------GEVIFNELNALPGFTNI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S+ +++ +I A R+
Sbjct: 323 SMYPKLFEEDGISYPDLITRLIRLAEERY 351
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 123/321 (38%), Gaps = 66/321 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG LQ L P+ G V+A+ MDK T + LA + + K
Sbjct: 91 LFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAVTMDKEFTKI----LAQRAGVPVAK 146
Query: 698 DVRRK----EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V K ED + W ++ +L L VKP+ G S G+ + D + Y +
Sbjct: 147 WVSIKRYEYEDAKNQKLSYDW--VSGQLGTSNLFVKPSNQGSSVGITHVT---DDSNYAE 201
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E ++L+ E V T+
Sbjct: 202 ALAEAF------------------KYDDKVLVEEGIVGTE-------------------- 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
VE V G+ H ++ V + S E K+ + L P +
Sbjct: 224 ----VETAV-----LGNDHPVVSGVGRIINADNTWYSYENKYSTESTTTLQIPAQ--IPA 272
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E +K ++ I + G +RID+ + +GEV+ E+N +PG T + ++ L E
Sbjct: 273 ETAEKVQENALKIYQITECSGMARIDSMLRESDGEVIFNELNALPGFT--NISMYPKLFE 330
Query: 932 QPPMYPHQFFRKVLDLGSERF 952
+ + +++ L ER+
Sbjct: 331 EDGISYPDLITRLIRLAEERY 351
>gi|334123237|ref|ZP_08497266.1| D-alanine-D-alanine ligase A [Enterobacter hormaechei ATCC 49162]
gi|333391111|gb|EGK62234.1| D-alanine-D-alanine ligase A [Enterobacter hormaechei ATCC 49162]
Length = 365
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 166/395 (42%), Gaps = 61/395 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNTP 136
RVG++ GG SAE +SL SA++++D I V ID+ + ++Q ++++ P
Sbjct: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLHADDP 64
Query: 137 ADFDFK--------LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
A + +AQG + A+ LA +D+VFP +HG GEDG +Q +L
Sbjct: 65 AHIALNPSDISVATVPGVAQGQLIDAGNAQALA-QIDVVFPIVHGTLGEDGSLQGMLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
N+PFVG+ GS AC DK D + + + + + F+ + N + S + +L
Sbjct: 124 NLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANRDKHSFAQIQAQL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ A + E D +VVVE + G E
Sbjct: 179 ---GLPLFVKPANQGSSVGVSKVTSEA-QFNDAVRLAFE-FDHKVVVEQGIN-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C VVL ++Y KY+ + P
Sbjct: 233 VLGNDFPQASTCGEVVL-----------------NSDFYSYDTKYIDDKGAQVVVPAALD 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V + IR A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 276 PDVNDRIRAIAIEAWQALGCSGMARVDVFLTPDNEVVINEINTLPG--------FTNISM 327
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G S+ ++ +I A R
Sbjct: 328 YPKLWQAS---------GISYQELITRLIELALER 353
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 125/323 (38%), Gaps = 78/323 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---L 693
VF VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L + +
Sbjct: 101 VVFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFV 159
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T+ + R K + ++ ++L L VKPA G S GV+++ V+
Sbjct: 160 TLTRANRDKHS---------FAQIQAQLGLP-LFVKPANQGSSVGVSKVTSEAQFNDAVR 209
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
L F E D + Q N
Sbjct: 210 ------------------------------LAF----EFDHKVVVEQGINGR-------- 227
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
EI V+G S V + + D S + K+ G + P A
Sbjct: 228 -----EIECAVLGNDFPQASTCGEVVL--NSDFYSYDTKYIDDKGAQVVVPA-------A 273
Query: 874 LD-KCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
LD RI IA AL G +R+D F+ DN EV+I E+NT+PG T + ++
Sbjct: 274 LDPDVNDRIRAIAIEAWQALGCSGMARVDVFLTPDN-EVVINEINTLPGFT--NISMYPK 330
Query: 929 LSEQPPMYPHQFFRKVLDLGSER 951
L + + + ++++L ER
Sbjct: 331 LWQASGISYQELITRLIELALER 353
>gi|384227655|ref|YP_005619400.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538595|gb|AEO08572.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 310
Score = 88.2 bits (217), Expect = 2e-14, Method: Composition-based stats.
Identities = 90/375 (24%), Positives = 156/375 (41%), Gaps = 77/375 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG S+ER IS+ S ++L+ + + LNAY I +
Sbjct: 4 KIAVLLGGTSSERKISIQSGYAILESL-----------LKSGLNAYPIDTR--------- 43
Query: 139 FDFKLESLA-QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D + L +GF V+ ++HG+ GEDG +Q VL+ N+P+ G+G
Sbjct: 44 -DHSIIQLKKEGFNK--------------VYISLHGKGGEDGSVQGVLQYLNIPYTGSGI 88
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A + DK+ L +G +T P + + N S L N F+ K+ +++KP
Sbjct: 89 MASSISIDKFRTKLLWKSRGLLTAPDIYISKKK-NISSLYN-FIIKKILKLGFPILIKPN 146
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSSIG+T+ + L A I +D +++E F++ G E+T +L G P
Sbjct: 147 NQGSSIGITIV-SCFEQLDDAINIAFSYSND-ILIEKFIK-GKEYTVPIL----GEQVLP 199
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
+ + T + ++Y KY+ + Y P + +++ A L
Sbjct: 200 PICIST--------------NNNFYDYNAKYI-SSSTQYFCPSGLNTIQEIELKKIAMLA 244
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
+ LG RID V K+ W ++N I GM S + A
Sbjct: 245 WNTLGCSGCGRID---------VILDDTDKF----W----LLEVNTIPGMTNRSLVPMSA 287
Query: 438 SKVGFSHSNILRTII 452
++G S ++ I+
Sbjct: 288 KEIGISFDELVLFIL 302
Score = 68.6 bits (166), Expect = 2e-08, Method: Composition-based stats.
Identities = 79/306 (25%), Positives = 130/306 (42%), Gaps = 70/306 (22%)
Query: 622 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 681
HSI I+L KE V+I++HG GEDG++Q +L+ +PYTG G+MAS +DK T
Sbjct: 45 HSI---IQLKKEGFNKVYISLHGKGGEDGSVQGVLQYLNIPYTGSGIMASSISIDKFRTK 101
Query: 682 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK--TLCVKPARDGCSTGV 739
L G+LT K K I +++ + K+ + +KP G S G+
Sbjct: 102 LLWK---SRGLLTAPDIYISK----KKNISSLYNFIIKKILKLGFPILIKPNNQGSSIGI 154
Query: 740 ARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS 799
+ C E L + +FS ++ +ILI E F+
Sbjct: 155 TIVSCFEQLDDAINI-----------AFSYSN----------DILI-EKFI--------- 183
Query: 800 QSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI 859
KG E TV ++G+ ++P + + + + K+ +
Sbjct: 184 ------------KGK----EYTVPILGE-----QVLPPICISTNNNFYDYNAKYISSSTQ 222
Query: 860 NLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 918
P + + L K I ++A N L G RID ++ D + ++EVNT+PGM
Sbjct: 223 YFCPSGLNTIQEIELKK----IAMLAWNTLGCSGCGRIDVILD-DTDKFWLLEVNTIPGM 277
Query: 919 TPSTVL 924
T +++
Sbjct: 278 TNRSLV 283
>gi|357025497|ref|ZP_09087619.1| D-alanyl-alanine synthetase A [Mesorhizobium amorphae CCNWGS0123]
gi|355542594|gb|EHH11748.1| D-alanyl-alanine synthetase A [Mesorhizobium amorphae CCNWGS0123]
Length = 362
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 159/389 (40%), Gaps = 51/389 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+G++ GG SAE +S+ SA +V+ ++ ++ R+ + +SS + T
Sbjct: 12 LRIGVLFGGRSAEHDVSVLSATNVMAALEPGKYDAVPVFVTRD-GQWLLSSFEDGELTTP 70
Query: 138 DFDFKLESLAQGFGSL----SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
++ + G G + + A + +DI+FP +HG GEDG +Q + E VP
Sbjct: 71 SVGTEVCLVPGGHGRMLAIPANGAPYELPVIDILFPVLHGLHGEDGAVQGLAEVARVPLA 130
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLL-QGSEVNESELSNWFVTNKLDPNSGKV 252
G G A DK A + G S + +G+ + + L +
Sbjct: 131 GCGILGSATALDKDIAKRLLKAAGLPVARSVTIDEGAAPSLAALEAELGL--------PL 182
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVG 310
+KP R GSS+GV + + ++ G + EG D +++ E F+ G +++ D
Sbjct: 183 FIKPARQGSSVGVR----KVSASQEFAGALAEGFEHDRKLLAEEFIRGREIECSVLEDTE 238
Query: 311 SG-FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G F P ++P E ++Y KY+ A P P +
Sbjct: 239 GGLFVSRPGEIVPA-------------ESHGFYSYDAKYIDKDGAALKVPAELPPEIEAR 285
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
IRE A+ F+ +G AR+D + P+ V + ++N I G
Sbjct: 286 IRETAAKAFRAVGCDSMARVDFFVTPNMDFVIN-----------------ELNTIPGFTD 328
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G S+ ++ ++ H +R
Sbjct: 329 ISMYAKAMAASGVSYPEVIHRLVAHGLAR 357
Score = 47.0 bits (110), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 115/307 (37%), Gaps = 59/307 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG +Q L E VP G G++ S T +DK +A L G L + +
Sbjct: 104 LFPVLHGLHGEDGAVQGLAEVARVPLAGCGILGSATALDK---DIAKRLLKAAG-LPVAR 159
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V E + L ++L L +KPAR G S GV ++ +++ + AL E
Sbjct: 160 SVTIDEGAAPS-----LAALEAELGLP-LFIKPARQGSSVGVRKVSASQE---FAGALAE 210
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
E D L + + R
Sbjct: 211 GF-------------------------------EHDRKLLAEEFI-----------RGRE 228
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
+E +V + G S + ES S + K+ G L P EA +
Sbjct: 229 IECSVLEDTEGGLFVSRPGEIVPAESHGFYSYDAKYIDKDGAALKVPAELPPEIEA--RI 286
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 937
++ A+ + +R+D FV N + +I E+NT+PG T + +A++ YP
Sbjct: 287 RETAAKAFRAVGCDSMARVDFFVT-PNMDFVINELNTIPGFT-DISMYAKAMAASGVSYP 344
Query: 938 HQFFRKV 944
R V
Sbjct: 345 EVIHRLV 351
>gi|238854349|ref|ZP_04644691.1| vancomycin/teicoplanin A-type resistance protein VanA
[Lactobacillus jensenii 269-3]
gi|260665042|ref|ZP_05865892.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US]
gi|313472963|ref|ZP_07813450.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153]
gi|238832971|gb|EEQ25266.1| vancomycin/teicoplanin A-type resistance protein VanA
[Lactobacillus jensenii 269-3]
gi|239528848|gb|EEQ67849.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153]
gi|260561096|gb|EEX27070.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US]
Length = 361
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 164/387 (42%), Gaps = 50/387 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVGLI GG S+E +S+ S ++ + I + V ++ ++ ++ ++ + P
Sbjct: 6 RVGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPT- 64
Query: 139 FDFKLESLAQGFGSLSEFAEHLA--ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
+ +++ ++S F E LA +D+ FP +HG GEDG IQ + PFVG
Sbjct: 65 --YTIKN-PHKLANVSNF-EQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++ + F + ++ N S+L +V+ KL +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVADWVAIKRF--EYNDKNNSKLDYKYVSEKLGTD--- 175
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+ VKP+ GSS+G+T D L DD+V+VE + G TA
Sbjct: 176 LFVKPSNQGSSVGITHVKSESDYLPALAEAF--KYDDKVLVEEAITGTEVETA------- 226
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
VL ++ + G + + K + ++Y+ KY + P P ++ +R
Sbjct: 227 -------VLGNDDIIVSGVGQI-INAKGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVR 278
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A +++ ARID L +S H ++F ++N + G S
Sbjct: 279 SNAEKIYRATECSGMARIDS-MLRTSDH---------------EVIFNELNALPGFTNIS 322
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSR 458
+ + G +++++ +I A R
Sbjct: 323 MYPKLFEEAGIKYTDLISRLIELAVER 349
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 100/458 (21%), Positives = 164/458 (35%), Gaps = 115/458 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG++SE +VS++SG N++ N +V P L +S D S
Sbjct: 7 VGLIFGGNSSEYEVSIVSGHNIY-NAIDKEKYDVYPIWLTKDNYFASLED---------S 56
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ VW P + P + A S+ Q+ N
Sbjct: 57 KKVWDDPTYTIKN---------------PHKLANVSNFE-QLAN---------------- 84
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
LP F VHG IGEDG +Q P+ G V+A+
Sbjct: 85 ----LP--------------EMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733
MDK T + L A + V R + + +D ++ S+ L VKP+
Sbjct: 127 TMDKEFTKI-LAQRAGVPVADWVAIKRFEYNDKNNSKLD--YKYVSEKLGTDLFVKPSNQ 183
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S G+ + D Y+ AL E F D
Sbjct: 184 GSSVGITHVKSESD---YLPALAEA------------------------------FKYDD 210
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 853
++L T + + GN +I V +G+ + G S + K+
Sbjct: 211 KVLVEEAITGTEVETAVL-GND---DIIVSGVGQI-----------INAKGSFYSYKNKY 255
Query: 854 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
+ L P + + E ++K + E I A + G +RID+ + + EV+ E+N
Sbjct: 256 DDSSTTTLQIP--ADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSDHEVIFNELN 313
Query: 914 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
+PG T + ++ L E+ + ++++L ER
Sbjct: 314 ALPGFT--NISMYPKLFEEAGIKYTDLISRLIELAVER 349
>gi|332160674|ref|YP_004297251.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325664904|gb|ADZ41548.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 366
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 163/392 (41%), Gaps = 53/392 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GKWHVNDASNYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLA-------ANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + +A A +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+G + DK D + + + + + F+ + N+ VT KL
Sbjct: 123 ANIPFVGSGVLGSAVSMDK-DITKRLLRDAGLNIAPFITL-TRANKDNYRFEQVTAKLGL 180
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ +KP GSS+GV+ V ++ + + + L D +V+VE +AI
Sbjct: 181 ---PLFIKPANQGSSVGVS---KVRNAYEYEQAVALAFDFDHKVLVE---------SAI- 224
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
VG +C V+ + G V + D ++Y KY+ P V
Sbjct: 225 --VGREIEC--AVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVIIPASIGSAV 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
++IR A F+ L AR+D + P + ++ +IN + G
Sbjct: 279 SDNIRAVALAAFRALECRGMARVDVFLTPDN-----------------RVIINEINTLPG 321
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G + ++ T+I A R
Sbjct: 322 FTNISMYPKLWRATGVGSTELITTLIELALER 353
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 122/288 (42%), Gaps = 72/288 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 693
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L ++A L
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITL 161
Query: 694 T-INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
T NKD R + ++T+KL L +KPA G S GV+++ A + Y
Sbjct: 162 TRANKDNYR------------FEQVTAKLGL-PLFIKPANQGSSVGVSKVRNAYE---YE 205
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+A+ +F H ++L S +
Sbjct: 206 QAVAL--------AFDFDH----------------------KVLVESAIVGR-------- 227
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI V+G SL V + S + S + K+ TG + PASI S
Sbjct: 228 ------EIECAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVI-IPASIGS-- 276
Query: 873 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
A+ + + L A AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 277 AVSDNIRAVALAAFRALECRGMARVDVFLTPDN-RVIINEINTLPGFT 323
>gi|401762475|ref|YP_006577482.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400174009|gb|AFP68858.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 366
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 163/394 (41%), Gaps = 59/394 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT--P 136
RVG++ GG SAE +SL SA++++D I V ID+ + ++Q N P
Sbjct: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLNAHDP 64
Query: 137 ADFDFKLESLAQGF------GSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
A ++ G L + A +D+VFP +HG GEDG +Q +L N
Sbjct: 65 AHIALNPSDISVATVPGVMKGQLIDAGNAQALTQIDVVFPIVHGTLGEDGSLQGMLRMAN 124
Query: 190 VPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
+PFVG+ GS AC DK D + + + + + F+ + N + S V+ +L
Sbjct: 125 LPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANRDKYSFAQVSGQL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ + +A + E D +VV+E ++ G E V
Sbjct: 179 --GLPLFVKPANQGSSVGVSKVASEAE-FTQAVRLAFE-FDHKVVIEQGIK-GREIECAV 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C VVL ++Y KY+ + P
Sbjct: 234 LGNDFPQASTCGEVVL-----------------NSDFYSYDTKYIDDKGAQVVVPADIDP 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ + IR A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 277 AINDKIRAIAISAYQTLGCSGMARVDVFLTPENDVVINEINTLPG--------FTNISMY 328
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G +S ++ +I A R
Sbjct: 329 PKLWQAS---------GLGYSELITRLIELALER 353
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 101 VVFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFV 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
R D + +++ +L L VKPA G S GV+++ + T V+
Sbjct: 160 TLTRANRDKYS------FAQVSGQLGLP-LFVKPANQGSSVGVSKVASEAEFTQAVR 209
>gi|94312057|ref|YP_585267.1| D-alanine--D-alanine ligase [Cupriavidus metallidurans CH34]
gi|190359208|sp|Q1LIM8.1|DDL_RALME RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|93355909|gb|ABF09998.1| D-alanine:D-alanine ligase [Cupriavidus metallidurans CH34]
Length = 327
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 154/380 (40%), Gaps = 84/380 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL ++ R ++A+
Sbjct: 16 KVGVLLGGKSAEREISLLSGNGVLAALK-----------SRGVDAHP------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G +SE A AA D VF +HGR+GEDG +Q +LE+ +P+ G+G
Sbjct: 52 FD-------PGLQPISELA---AAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK G T +L + ++ +++ + ++VKP R
Sbjct: 102 ASALAMDKQATKRLWMTHGLATPRFAMLYANTDFDAVVADLGL---------PLIVKPAR 152
Query: 259 AGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+T A + + +KA G+D V+ E F++ G+E T ++ G +
Sbjct: 153 EGSSIGLTKVIAADQMRAAFEKAA-----GLDADVIAETFID-GAELTCPIVGEGPTAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + ++ ++Y+ KY T Y P P + +R A
Sbjct: 207 LPV--------------IKIVAPESNYDYQNKYF-TDDTQYLCPSTLPDALEREVRALAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ LG +AR D T G ++N GM S +
Sbjct: 252 EAFRVLGCRGWARADVML-----------------TRDGKPYLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSNILRTIIGHA 455
A G S+ + + ++ A
Sbjct: 295 AARANGISYEDFVMQVLAAA 314
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 67/137 (48%), Gaps = 20/137 (14%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
D P + +LA VFIA+HG GEDGT+Q LLE G+PYTG GV+AS M
Sbjct: 48 DAHPFDPGLQPISELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYTGSGVLASALAM 107
Query: 676 DKVATS-LALNH-LAD--LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
DK AT L + H LA +L N D L P++ VKPA
Sbjct: 108 DKQATKRLWMTHGLATPRFAMLYANTDFDAVVADLGLPLI----------------VKPA 151
Query: 732 RDGCSTGVARLCCAEDL 748
R+G S G+ ++ A+ +
Sbjct: 152 REGSSIGLTKVIAADQM 168
>gi|283457865|ref|YP_003362465.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18]
gi|422324617|ref|ZP_16405654.1| hypothetical protein HMPREF0737_00764 [Rothia mucilaginosa M508]
gi|254967094|gb|ACT97589.1| putative D-alanine-D-alanine ligase [uncultured organism]
gi|254967098|gb|ACT97591.1| putative D-alanine-D-alanine ligase [uncultured organism]
gi|254967102|gb|ACT97593.1| putative D-alanine-D-alanine ligase [uncultured organism]
gi|283133880|dbj|BAI64645.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18]
gi|353344139|gb|EHB88452.1| hypothetical protein HMPREF0737_00764 [Rothia mucilaginosa M508]
Length = 372
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 160/395 (40%), Gaps = 50/395 (12%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISS---AQVYSNTP 136
V L+CGG S+E ISL +A VL I V I R+ Y A++ + T
Sbjct: 7 VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLA-----------ANVDIVFPTIHGRFGEDGGIQEVL 185
+F E Q F + L A VD+VFP +HG FGEDG +Q +L
Sbjct: 67 GTAEFP-EGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLL 125
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
E ++ +VG G A DK+ + G P ++ + + + ++
Sbjct: 126 EMADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQ--ILERV 183
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFT 303
+ VKPTRAGSS G+T +DS+++ I E D ++++E + G E
Sbjct: 184 LKLGFPMFVKPTRAGSSFGIT----KVDSVEELVPAIEEARRHDPKIIIEAGIV-GREIE 238
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VLD G P P E+E+ V + +++ KY+ P P
Sbjct: 239 CAVLDGHHG--EMPRASYPGEIEV-------VDQDHGFYDFEAKYVSESSAVTVCPANLP 289
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V + +RE L + F +DG L S + TE G ++ ++N
Sbjct: 290 QDVQDRLRE--------LAVKAFLALDGEGL---------SRADFFYTEDGRLVINEVNT 332
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S G S+++++ ++ A R
Sbjct: 333 MPGFTPISMYKTMWENTGISYTDLISELLTLAMER 367
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 131/324 (40%), Gaps = 69/324 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTIN 696
VF +HG GEDGT+Q LLE + Y G GV AS MDK +A ++G +
Sbjct: 107 VFPLLHGPFGEDGTVQGLLEMADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVV 166
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ R+ E + I+ E KL + VKP R G S G+ ++ E+L V A+E
Sbjct: 167 TN-RQWEHEDREQIL----ERVLKLGFP-MFVKPTRAGSSFGITKVDSVEEL---VPAIE 217
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
E +R H P+I+I V R
Sbjct: 218 E----------ARRHD--------PKIIIEAGIV------------------------GR 235
Query: 817 WVEITVGVIGKCGSMHSLMPSVT-------VKESGDILSLEEKFQGGTGINLTPPPASIM 869
+E V H MP + V + E K+ + +T PA+ +
Sbjct: 236 EIECAV-----LDGHHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESS-AVTVCPAN-L 288
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 929
+ D+ ++ AL EG SR D F ++G ++I EVNT+PG TP + +++ +
Sbjct: 289 PQDVQDRLRELAVKAFLALDGEGLSRAD-FFYTEDGRLVINEVNTMPGFTP--ISMYKTM 345
Query: 930 SEQPPMYPHQFFRKVLDLGSERFL 953
E + ++L L ER L
Sbjct: 346 WENTGISYTDLISELLTLAMERPL 369
>gi|315605519|ref|ZP_07880556.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312786|gb|EFU60866.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 335
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 151/366 (41%), Gaps = 84/366 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQV-YSNTPA 137
+V +I GG + ER +S+ S R V + + AQ Y +
Sbjct: 4 KVLIIAGGLTHERDVSVRSGRRVANIL-----------------------AQFGYEVMRS 40
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D L Q F D+V+P +HG GEDG +Q LE VPFVG+ S
Sbjct: 41 DVDASLTESIQTF------------EPDVVWPLVHGSIGEDGSLQSFLESVGVPFVGSSS 88
Query: 198 RACRQAFDKYDA-----SLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN-SGK 251
A +K A S ++ G++T+P + + +L V L+ + S
Sbjct: 89 VQAMLASNKPIAKALLGSAGVATPGWVTLPQAIFR-------QLGASNVLAALEGSVSFP 141
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
VV+KPT GS++G++ A+ D L++A + R++VE ++ G + V+D+
Sbjct: 142 VVIKPTDGGSALGISTAHNA-DQLRRAM-VDAFAYGQRLMVEQRID-GRDVAVSVVDLWD 198
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
G PV L P E+ ++Y +Y T + Y P RF ++ ++
Sbjct: 199 G----PVALPPVEIS----------TDGGRYDYDARYT-TDETEYFVPARFSDEILADLQ 243
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A LGL D +RID + + GT F D N+ GM TS
Sbjct: 244 AAAVEAHTTLGLRDLSRID-----------------FVVDDAGTCWFIDANVTPGMTDTS 286
Query: 432 FLFQQA 437
L Q A
Sbjct: 287 LLPQAA 292
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTG 665
V+ VHG IGEDG+LQS LE+ GVP+ G
Sbjct: 58 VWPLVHGSIGEDGSLQSFLESVGVPFVG 85
>gi|21672494|ref|NP_660561.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|22654229|sp|O51927.2|DDL_BUCAP RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|21623113|gb|AAM67772.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 306
Score = 88.2 bits (217), Expect = 2e-14, Method: Composition-based stats.
Identities = 91/378 (24%), Positives = 155/378 (41%), Gaps = 83/378 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG S+ER IS+ S ++L + + NAYAI +
Sbjct: 4 KIAVLLGGNSSERKISIKSGYAILQSL-----------LRSGFNAYAIDTR--------- 43
Query: 139 FDFKLESLA-QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DF + L QGF D + +HG GEDG IQ +LE N+P+ G+G
Sbjct: 44 -DFPIMQLKKQGF--------------DSAYIALHGTGGEDGSIQGILEYLNIPYTGSGI 88
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ + DK+ L +P LQ ++++ S ++ K+ VV+KP
Sbjct: 89 MSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISKYTYS--YILKKILKLKFPVVIKPN 146
Query: 258 RAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
AGSSIG+T+ +IDS+ A + +++E FL+ G+E+T +L+
Sbjct: 147 NAGSSIGITIVNHPDLLIDSINLAF-----NYSNNIIIEKFLK-GTEYTVSILN------ 194
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
VL P + + K+ ++Y KY+ + Y P +++
Sbjct: 195 --KKVLPP----------IKIITKNNFYDYSSKYIES-STEYICPSGLNYQKEEELKKIV 241
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+ + LG RID ++ K+ W +IN I GM S +
Sbjct: 242 EIAWNSLGCKGCGRIDAIL---------DNKDKF----W----LLEINTIPGMTHRSLVP 284
Query: 435 QQASKVGFSHSNILRTII 452
A +G S ++ I+
Sbjct: 285 MAAKSIGISFDELILKIL 302
Score = 68.6 bits (166), Expect = 2e-08, Method: Composition-based stats.
Identities = 72/305 (23%), Positives = 127/305 (41%), Gaps = 65/305 (21%)
Query: 628 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 687
++L K+ + +IA+HG GEDG++Q +LE +PYTG G+M+S +DK T L L
Sbjct: 48 MQLKKQGFDSAYIALHGTGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSL 107
Query: 688 ADLGVLTINKDVR-RKEDLLKTPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCA 745
+ L + D+ +K+D+ K I L L+ K + +KP G S G+
Sbjct: 108 S----LRVLPDIYLQKKDISKYTYSYI---LKKILKLKFPVVIKPNNAGSSIGIT----- 155
Query: 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
++ P + D I + +N
Sbjct: 156 --------------------------------------IVNHPDLLIDSINLAFNYSNNI 177
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
KG E TV ++ K ++P + + + K+ + + P
Sbjct: 178 IIEKFLKG----TEYTVSILNK-----KVLPPIKIITKNNFYDYSSKYIESSTEYICPSG 228
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 925
+ E L K+ +E+ N+L +G RIDA ++ + + ++E+NT+PGMT +++
Sbjct: 229 LNYQKEEEL---KKIVEIAWNSLGCKGCGRIDAILD-NKDKFWLLEINTIPGMTHRSLVP 284
Query: 926 HQALS 930
A S
Sbjct: 285 MAAKS 289
>gi|251782869|ref|YP_002997172.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|386317386|ref|YP_006013550.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|408402004|ref|YP_006859968.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410495277|ref|YP_006905123.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417927322|ref|ZP_12570710.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|242391499|dbj|BAH81958.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323127673|gb|ADX24970.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|340765196|gb|EGR87722.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|407968233|dbj|BAM61471.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410440437|emb|CCI63065.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 348
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 169/388 (43%), Gaps = 53/388 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + Q +S PA +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQ---FIKTQEFSEKPAATER 64
Query: 142 KLESLAQGFGSL---SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + S+ E A +VFP +HG GEDG IQ LE +P+VGT
Sbjct: 65 LMTNSTIQYEQQIKPSDIYEEDA----VVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G V + + G ++ +T L + + VKP
Sbjct: 121 SSSVAMDKITTKRVLESAGIPQVAYTVYIDGQDLEAC------LTETLATLAFPIFVKPA 174
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A + LK+A + L D RV++E +G A ++VG
Sbjct: 175 NMGSSVGISKA-QTKEELKEAIQLAL-TYDSRVLIE---QG---VVAREIEVG------- 219
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
+L TEV+ G V V++ + ++Y+ KY+ ++ P + +R A
Sbjct: 220 -LLGNTEVKSTLPGEV-VKDVE-FYDYKAKYIDN-KITMAIPAEIDQDTMTKMRTYAESA 275
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ LG C +R D +FL ++ G I ++N + G Q S
Sbjct: 276 FKALGGCGLSRCD-FFL----------------SQDGQIYLNELNTMPGFTQWSMYPLLW 318
Query: 438 SKVGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 319 ENMGLAYSDLIEELVTLAQEMFDQRESH 346
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L V
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGIPQV 143
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
T+ D + E L + + + VKPA G S G+++ E+L
Sbjct: 144 AYTVYIDGQDLEACLTETLATLAF---------PIFVKPANMGSSVGISKAQTKEEL 191
>gi|365848249|ref|ZP_09388727.1| D-ala D-ala ligase protein [Yokenella regensburgei ATCC 43003]
gi|364571211|gb|EHM48805.1| D-ala D-ala ligase protein [Yokenella regensburgei ATCC 43003]
Length = 368
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 162/398 (40%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA+++++ I V ID+ + I+ A Y +N
Sbjct: 8 LRVGIVFGGKSAEHEVSLQSAKNIVEAIDKTKFDVTLLGIDKQ-GQWHINDASSYLLNAN 66
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN------VDIVFPTIHGRFGEDGGIQEVLE 186
PA + +LAQ G +S+ A N +D++FP +HG GEDG +Q +L
Sbjct: 67 DPARIALRPSDVTLAQVPGKVSQQLID-AGNGQPLPGIDVIFPIVHGTLGEDGSLQGMLR 125
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+P+VG+ GS AC DK + G P L + N ++S + +
Sbjct: 126 MANLPYVGSDVLGSAAC---MDKDVTKRLLRDAGLAIAPFVTL--TRANRDKISFADIES 180
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + L D +VVVE ++ G E
Sbjct: 181 RL---GLPLFVKPANQGSSVGVS---KVTSEAQYHTAVALAFEFDHKVVVEKGIK-GREI 233
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 234 ECAVLGNDFPEASTCGEIVL-----------------NSEFYAYDTKYIDDNGARVVIPA 276
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
V + +R A +Q LG AR+D + TE ++ +
Sbjct: 277 DIDSAVNDKVRAIAIQAYQTLGCSGMARVDVFL-----------------TEDNDVIINE 319
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S + G +++++ +I A R
Sbjct: 320 INTLPGFTNISMYPKLWQASGLDYTSLITRLIELALER 357
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ +L +PY G V+ S CMDK T L A L +
Sbjct: 106 IFPIVHGTLGEDGSLQGMLRMANLPYVGSDVLGSAACMDKDVTKRLLRD-AGLAIAPFVT 164
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R D + + ++ S+L L VKPA G S GV+++
Sbjct: 165 LTRANRDKIS------FADIESRLGLP-LFVKPANQGSSVGVSKV 202
>gi|294791342|ref|ZP_06756499.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
gi|294457813|gb|EFG26167.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
Length = 385
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 129/307 (42%), Gaps = 42/307 (13%)
Query: 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITV 221
++D VFP +HG +GEDG IQ +LE +P+VG G A DK+ + +S+ G
Sbjct: 106 GHIDAVFPVLHGPYGEDGTIQGLLEMMGIPYVGCGVFASAACMDKHYTKVLLSQAGIQVA 165
Query: 222 PSFLLQGSEVNESELSNWFVTN-----KLDPNSG---KVVVKPTRAGSSIGVT-VAYGVI 272
P L + + FV + + +G + VKP+RAGSS GVT V +
Sbjct: 166 PGITL---DTRSYHRDSHFVADGESLLQAVDRAGLQYPLFVKPSRAGSSFGVTKVDFSQD 222
Query: 273 DSL--KKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQ 328
SL + + E D RV++E ++ G E VL G P LP EV L
Sbjct: 223 KSLLMNRLSAAVFEAANHDWRVLIEQGID-GREIECAVLAARPG--SLPETSLPGEVVL- 278
Query: 329 FQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR 388
D + D +++ KY+ +Q P P ++ +R+ A F + +R
Sbjct: 279 -----DAPDDDTFYDFDSKYMDSQASHVEVPAHLPQKLLEKVRQTAGQAFLAVDGQGLSR 333
Query: 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNIL 448
+D + T G +L +IN + G S + +G S+ ++
Sbjct: 334 VDTFV-----------------TADGQVLVNEINTMPGFTPISMYAKAWEAMGLSYRELI 376
Query: 449 RTIIGHA 455
+I A
Sbjct: 377 SRLIDGA 383
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 66/299 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-------D 689
VF +HG GEDGT+Q LLE G+PY G GV AS CMDK T + L+
Sbjct: 110 AVFPVLHGPYGEDGTIQGLLEMMGIPYVGCGVFASAACMDKHYTKVLLSQAGIQVAPGIT 169
Query: 690 LGVLTINKD---VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
L + ++D V E LL+ VD + LQ L VKP+R G S GV ++ ++
Sbjct: 170 LDTRSYHRDSHFVADGESLLQA--VD-----RAGLQYP-LFVKPSRAGSSFGVTKVDFSQ 221
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806
D ++ + L +FE + N +
Sbjct: 222 DKSLLMNRLSAA--------------------------VFE-------------AANHDW 242
Query: 807 DRLMWKG-NSRWVEITVGVIGKCGSM-HSLMPSVTVKESGD---ILSLEEKFQGGTGINL 861
L+ +G + R +E V + + GS+ + +P V ++ D + K+ ++
Sbjct: 243 RVLIEQGIDGREIECAV-LAARPGSLPETSLPGEVVLDAPDDDTFYDFDSKYMDSQASHV 301
Query: 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
P + + + L+K +Q A+ +G SR+D FV D G+VL+ E+NT+PG TP
Sbjct: 302 EVP--AHLPQKLLEKVRQTAGQAFLAVDGQGLSRVDTFVTAD-GQVLVNEINTMPGFTP 357
>gi|293603446|ref|ZP_06685871.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
gi|292818148|gb|EFF77204.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
Length = 316
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 159/384 (41%), Gaps = 86/384 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S + V A++SA V ++
Sbjct: 7 KVGVLYGGRSAEREVSLMSGKGVQQ---------------------ALASAGVDAHL--- 42
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G SL+E A A D VF +HGR+GEDG IQ LE +P+ G+G
Sbjct: 43 FD-------TGERSLAELA---AEGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPM 92
Query: 199 ACRQAFDKYDASLEMSKQGFITV----PSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
A A DK M+K+ ++ V P F EV +++ V ++L S +++
Sbjct: 93 ASALAMDK-----TMTKRLWLQVGLPTPEF-----EVLDADTELRLVPDRL---SLPLII 139
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP GS++G+T G D +K+A D V+ E F+ G E T VL G G
Sbjct: 140 KPPHEGSTVGITKVVGYSD-MKEAYAAAAR-FDSVVLAEQFII-GRELTVAVLGSGKGAR 196
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PV +++ ++Y KY + + P P V + E A
Sbjct: 197 ALPV--------------IEIAAPGGNYDYEHKYF-SDDTQFFCPATLPDGVAEEVAEIA 241
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+Q LG + R D F+ + W ++N GM S +
Sbjct: 242 VKAYQALGCEGWGRAD--FILDRDN-----------RPW----LLEMNTSPGMTSHSLVP 284
Query: 435 QQASKVGFSHSNILRTIIGHACSR 458
A VG S++++ +I+ A +
Sbjct: 285 MAAKAVGISYADLCVSILSEASCK 308
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 113/305 (37%), Gaps = 82/305 (26%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+LA E VFIA+HG GEDGT+Q LE G+PYTG G MAS MDK T +
Sbjct: 52 ELAAEGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRLWLQVG 111
Query: 689 ----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
+ VL + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPEFEVLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 745 AEDLT-VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
D+ Y A F+ V ++ +
Sbjct: 156 YSDMKEAYAAAAR-----------------------------FDSVVLAEQFIIGR---- 182
Query: 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 863
E+TV V+G G +P + + G E K+ P
Sbjct: 183 ---------------ELTVAVLGS-GKGARALPVIEIAAPGGNYDYEHKYFSDDTQFFCP 226
Query: 864 PPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
D + + IA AL EG+ R D ++ DN ++E+NT PGMT
Sbjct: 227 ATLP-------DGVAEEVAEIAVKAYQALGCEGWGRADFILDRDN-RPWLLEMNTSPGMT 278
Query: 920 PSTVL 924
+++
Sbjct: 279 SHSLV 283
>gi|39998157|ref|NP_954108.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
gi|81701145|sp|Q748D8.1|DDL_GEOSL RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|39985103|gb|AAR36458.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
Length = 316
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 80/321 (24%)
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
D+ +LP + + EWI +A FI +HG GEDGT+Q LLE G+PYTG GV+AS
Sbjct: 47 DVGRDLP-QVLVREWIDVA-------FICLHGRYGEDGTVQGLLELMGIPYTGSGVLASA 98
Query: 673 TCMDKVATSLALNHLADLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
M+K+ +A A G LTI + VRR E + P+ + + + VKP
Sbjct: 99 LAMNKI---VAKEVFAARG-LTIAPYRVVRRGETV--DPVAEGFG--------YPVVVKP 144
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790
+++G S GV+ + E+L P++ A F
Sbjct: 145 SQEGSSVGVSIVKSPEEL---------------PSALELA------------------FR 171
Query: 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 850
D+IL +R + KG EI +G++ M ++ + + E
Sbjct: 172 YDDDIL---------VERFI-KGR----EIQIGILD-----DRAMGAIEIVPVNEFYDFE 212
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K+ G ++ PP ++ E + E AL G+SR+D F+ + GE ++
Sbjct: 213 AKYTAGKAEHICPP---VLPAELHRRLLAEGEAAHRALGCSGYSRVD-FLVTEGGECYLL 268
Query: 911 EVNTVPGMTPSTVLIHQALSE 931
EVNT+PGMT ++L AL E
Sbjct: 269 EVNTLPGMTALSLLPEIALKE 289
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 149/371 (40%), Gaps = 87/371 (23%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ ++G++ GG SAER +SL S +VL +Q ++ Y
Sbjct: 7 KTTKIGVLMGGLSAEREVSLASGGAVLKALQ----------------------SRGYDAV 44
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
P D L + + E+ +D+ F +HGR+GEDG +Q +LE +P+ G+
Sbjct: 45 PVDVGRDLPQVL-----VREW-------IDVAFICLHGRYGEDGTVQGLLELMGIPYTGS 92
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
G A A +K A + +G P +++ E + + VVVK
Sbjct: 93 GVLASALAMNKIVAKEVFAARGLTIAPYRVVRRGETVDPVAEGF---------GYPVVVK 143
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P++ GSS+GV++ + L A + DD ++VE F++G I+ D
Sbjct: 144 PSQEGSSVGVSIVKSP-EELPSALELAFR-YDDDILVERFIKGREIQIGILDD------- 194
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSIREGA 374
+ G++++ + +++ KY T A H PP P + +
Sbjct: 195 ------------RAMGAIEIVPVNEFYDFEAKY--TAGKAEHICPPVLPAELHRRLLAEG 240
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+ LG ++R+D FL TE G ++N + GM S L
Sbjct: 241 EAAHRALGCSGYSRVD--FL---------------VTEGGECYLLEVNTLPGMTALSLLP 283
Query: 435 QQA---SKVGF 442
+ A S +GF
Sbjct: 284 EIALKESGIGF 294
>gi|126699230|ref|YP_001088127.1| D-alanyl-alanine synthetase A [Clostridium difficile 630]
gi|115250667|emb|CAJ68491.1| D-alanine--D-alanine ligase 2 [Clostridium difficile 630]
Length = 366
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 171/404 (42%), Gaps = 77/404 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI--SSAQVYSNTP 136
++ +I GG S E +SL SA +VL+++ + + I R N Y + +NT
Sbjct: 5 KIAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNWYHYIGDYNNIQNNTW 64
Query: 137 ADFDFKL--------------------ESLAQGF--GSLSEFAEH--LAANVDIVFPTIH 172
+ D + ++++Q S E E+ +D VFP +H
Sbjct: 65 FERDTDIIPVIVSQNRVKNGIIEFLISDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLH 124
Query: 173 GRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSE- 230
G+ GEDG +Q + E + +G G+ + DK D S ++ I VP S LL+ S+
Sbjct: 125 GKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDK-DKSHKLVHSEGIKVPKSILLKYSDK 183
Query: 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRV 290
N +ELS + + +KP RAGSS G++ Y KK + +V
Sbjct: 184 FNVAELSKDL--------TYPLFIKPVRAGSSFGISKIY------KKE--------ELQV 221
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY- 348
V+L E +E I+ + GF+ VL ++ G VD + F+Y KY
Sbjct: 222 AVDLAFEHDNE--VIIEENIDGFEVGCAVLGNNDL---LVGRVDEIELSKGFFDYTEKYT 276
Query: 349 LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKY 408
L + ++ H P R + I+E A ++++ LG FAR+D + PS
Sbjct: 277 LKSSKI--HMPARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS------------ 322
Query: 409 GSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
G I+F ++N I G S +G S IL II
Sbjct: 323 -----GEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKII 361
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 108/266 (40%), Gaps = 51/266 (19%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
+++ VIFGG+++E VSL S V NL ++ P I I D ++
Sbjct: 4 KKIAVIFGGNSTEYDVSLQSAFAVLENLNT-EKYDILPI----GITREGNWYHYIGDYNN 58
Query: 552 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 611
W R T +++ + +N+V N ++E
Sbjct: 59 IQNNTW------FERDT--DIIPVIVS-------------QNRVKNGIIE---------- 87
Query: 612 FDIADELPMRHSINEWIKLAKENQAT-----VFIAVHGGIGEDGTLQSLLEAEGVPYTGP 666
F I+D + H N I+ + + VF +HG GEDGT+Q L E G+ G
Sbjct: 88 FLISDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGC 147
Query: 667 GVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 726
G ++S CMDK S L H + V K LLK EL+ L L
Sbjct: 148 GTLSSALCMDK-DKSHKLVHSEGIKV--------PKSILLKYSDKFNVAELSKDL-TYPL 197
Query: 727 CVKPARDGCSTGVARLCCAEDLTVYV 752
+KP R G S G++++ E+L V V
Sbjct: 198 FIKPVRAGSSFGISKIYKKEELQVAV 223
>gi|15672323|ref|NP_266497.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. lactis
Il1403]
gi|385829912|ref|YP_005867725.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis CV56]
gi|13878460|sp|Q9CIL5.1|DDL_LACLA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|12723209|gb|AAK04439.1|AE006271_2 D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis
Il1403]
gi|326405920|gb|ADZ62991.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis CV56]
Length = 349
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 167/381 (43%), Gaps = 50/381 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + +V+ Y+I + Q +++ PA+ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGE---FIKTQEFTDKPAEEEK 64
Query: 142 KL-ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
L LA+ + +S A + A V VFP +HG GEDG IQ LE + +VG +
Sbjct: 65 LLTNDLAESYPKISPAAIYEKAAV--VFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSA 122
Query: 201 RQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
DK A G VP ++ ++ N+ E++ V P V VKP G
Sbjct: 123 SSTMDKLLAKHVFEAVGVPQVP-YVAAFADENQGEIAQEVVEKLEFP----VFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
SS+G++ +D L + + E D+RVV+E ++ E VL G+ D
Sbjct: 178 SSVGIS----KVDDLADLQPALSEAYKYDNRVVIEQGVD-AREIECAVL--GNNSDVSAT 230
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
LP EV V++ + ++Y KY+ ++ P + P + ++E A +
Sbjct: 231 --LPGEV---------VKDVE-FYDYNSKYI-DNKIQMDIPAKVPADLAQKMQEYAIKAY 277
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ + +R D +F+ T+ G + +IN I G Q S
Sbjct: 278 KAVNGTGLSRCD-FFV----------------TKDGNVYLNEINAIPGFTQWSMYPLLWE 320
Query: 439 KVGFSHSNILRTIIGHACSRF 459
+G S+S+++ ++ A F
Sbjct: 321 NMGLSYSDLIEKLVDLAKETF 341
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 125/324 (38%), Gaps = 70/324 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE + Y GP ++++ + MDK+ LA + +GV
Sbjct: 84 EKAAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMDKL---LAKHVFEAVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ ++ +I E+ KL+ VKPA G S G++++ +DL
Sbjct: 141 PQVPYVAAFADENQG----EIAQEVVEKLEFPVF-VKPANMGSSVGISKV---DDLADLQ 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
AL E K +R++ +
Sbjct: 193 PALSEAY--------------------------------------------KYDNRVVIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVK--ESGDILS--LEEKFQGGTGINLTPPPASI 868
EI V+G + + +P VK E D S ++ K Q + A
Sbjct: 209 QGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYNSKYIDNKIQMDIPAKVPADLAQK 268
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
M A+ K A+ G SR D FV D G V + E+N +PG T + ++
Sbjct: 269 MQEYAIKAYK--------AVNGTGLSRCDFFVTKD-GNVYLNEINAIPGFTQWS--MYPL 317
Query: 929 LSEQPPMYPHQFFRKVLDLGSERF 952
L E + K++DL E F
Sbjct: 318 LWENMGLSYSDLIEKLVDLAKETF 341
>gi|319760597|ref|YP_004124535.1| D-alanine--D-alanine ligase [Candidatus Blochmannia vafer str.
BVAF]
gi|318039311|gb|ADV33861.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia
vafer str. BVAF]
Length = 376
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 143/323 (44%), Gaps = 29/323 (8%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS---SAQVY 132
+LRVGLICGG S E +SL SA ++ HI + + ++I ++ Y I S ++
Sbjct: 6 NILRVGLICGGCSTEHEVSLQSAAYIMQHIDKNLFEIVVFWISKHGGWYIIYNDVSRNIF 65
Query: 133 SNTPADFDFKLESLAQGF-GSLSEFAEHLAA---NVDIVFPTIHGRFGEDGGIQEVLEKY 188
S++ + + + + F G F + + + +D++FP IHG FGEDG +Q ++
Sbjct: 66 SDSREQKNKYIPVMIKQFSGRFVFFTDDITSALLKIDVIFPIIHGSFGEDGSLQGLIRIM 125
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+P+VG+ DK + G + V SF + E SN + +
Sbjct: 126 NLPYVGSSILGSSICMDKTITKRLLRDSG-LPVASF----KTFSHYERSNITFVSFYNMF 180
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+KP GSSIGV+ + KA + D+++VE + G E VL
Sbjct: 181 GLPFFIKPVNQGSSIGVSKVTNQ-NVFNKALDVAF-AYGDKIMVEPCIV-GRELECAVL- 236
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL-PTQQVAYHTPPRFPIVVI 367
G D P+ + E+ ++ + + Y +KY+ T +V P ++
Sbjct: 237 ---GND-DPISSVCGEI------VINSNNDNGFYTYYKKYISSTTEVI--IPALITNIIS 284
Query: 368 NSIREGASLLFQRLGLCDFARID 390
+ +R + FQ L ARID
Sbjct: 285 DKVRHYSICAFQTLSCSGMARID 307
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 111/289 (38%), Gaps = 61/289 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F +HG GEDG+LQ L+ +PY G ++ S CMDK T L D G+ +
Sbjct: 103 VIFPIIHGSFGEDGSLQGLIRIMNLPYVGSSILGSSICMDKTITKRLLR---DSGLPVAS 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ V ++ +KP G S GV+++ + V+ KAL+
Sbjct: 160 FKTFSHYERSNITFVSFYNMFG-----LPFFIKPVNQGSSIGVSKV---TNQNVFNKALD 211
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
A+G D++M +
Sbjct: 212 VAF----------AYG----------------------------------DKIMVEPCIV 227
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPASIMSTEAL 874
E+ V+G + S+ + + + D + +K+ T + P ++++
Sbjct: 228 GRELECAVLGNDDPISSVCGEIVINSNNDNGFYTYYKKYISSTTEVIIP---ALITNIIS 284
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
DK + L G +RID F+ ++N +++I EVNT+PG T ++
Sbjct: 285 DKVRHYSICAFQTLSCSGMARIDMFLTLNN-QIIINEVNTLPGFTSHSM 332
>gi|300924095|ref|ZP_07140089.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
gi|301330768|ref|ZP_07223366.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
gi|422960266|ref|ZP_16971714.1| D-alanine-D-alanine ligase A [Escherichia coli H494]
gi|450210897|ref|ZP_21894135.1| D-alanyl-alanine synthetase A [Escherichia coli O08]
gi|300419691|gb|EFK03002.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
gi|300843281|gb|EFK71041.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
gi|371594064|gb|EHN82936.1| D-alanine-D-alanine ligase A [Escherichia coli H494]
gi|449322844|gb|EMD12823.1| D-alanyl-alanine synthetase A [Escherichia coli O08]
Length = 364
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++F +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLLTVDVIFAIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFAIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|440738124|ref|ZP_20917665.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens BRIP34879]
gi|447915031|ref|YP_007395599.1| D-alanyl-alanine synthetase A [Pseudomonas poae RE*1-1-14]
gi|440381379|gb|ELQ17915.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens BRIP34879]
gi|445198894|gb|AGE24103.1| D-alanyl-alanine synthetase A [Pseudomonas poae RE*1-1-14]
Length = 364
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 159/406 (39%), Gaps = 81/406 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I GG SAE +SL SAR+++D + ID+ + + N +
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPILMGIDK--------AGHWHLNDTS 55
Query: 138 DFDFKLES------------LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGG 180
DF E+ LA G S+ + L ++D++FP +HG GEDG
Sbjct: 56 DFLINQENPALIALNQSNRELAVVPGKASQQVVETSGQALLEHIDVIFPIVHGSLGEDGC 115
Query: 181 IQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
+Q +L ++PFVG+ GS C DK + + G P L V +
Sbjct: 116 LQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGIAVTPFITLTRRTVARTSFD 172
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFL 296
T L + VKP GSS+GV+ V D + + L G D++V+VE +
Sbjct: 173 MAVNTLGL-----PMFVKPANQGSSVGVS---KVADEAEYHAAVELALGFDEKVLVESAV 224
Query: 297 EGGSEFTAIVLD----VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
G E VL + SG C +V+ ++Y KY+ Q
Sbjct: 225 S-GREIECAVLGNERPIASG--CGEIVV-----------------SSGFYSYDSKYIDDQ 264
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
P + IR A F+ LG AR+D + T+
Sbjct: 265 AAQVVVPADISMQACERIRSLAVEAFEVLGCAGLARVDVFL-----------------TD 307
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G + S + G S+S ++ +I A R
Sbjct: 308 DGEVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIDLALER 353
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 110/466 (23%), Positives = 175/466 (37%), Gaps = 126/466 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRSRFEPILMG--IDKAGHWHLNDT---SDF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A+ QVV + L +H D
Sbjct: 58 LINQENPALIALNQSNREL------AVVPGKAS------QQVVETSGQALLEH-----ID 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGSLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSK----LQCKTL--- 726
CMDK I+K + R + TP + + ++ + TL
Sbjct: 138 CMDK----------------DISKRLLRDAGIAVTPFITLTRRTVARTSFDMAVNTLGLP 181
Query: 727 -CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
VKPA G S GV+++ D Y H +E+ E ++
Sbjct: 182 MFVKPANQGSSVGVSKVA---DEAEY-------------------HAAVELALGFDEKVL 219
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
E V EI GN R + CG + V SG
Sbjct: 220 VESAVSGREI------------ECAVLGNERPIA------SGCGEI--------VVSSG- 252
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
S + K+ + P + +S +A ++ + L G +R+D F+ D+G
Sbjct: 253 FYSYDSKYIDDQAAQVVVP--ADISMQACERIRSLAVEAFEVLGCAGLARVDVFLT-DDG 309
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
EVLI E+N++PG T + ++ L + M + +++DL ER
Sbjct: 310 EVLINEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIDLALER 353
>gi|398889369|ref|ZP_10643212.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM55]
gi|398189491|gb|EJM76765.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM55]
Length = 364
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/408 (25%), Positives = 164/408 (40%), Gaps = 81/408 (19%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R LRVG+I GG SAE +SL SA++++D + ID+ + N
Sbjct: 2 RKLRVGIIFGGRSAEHEVSLQSAKNIVDALDRSRFEPVLIGIDKQ--------GHWHLND 53
Query: 136 PADFDFKLES------------LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGED 178
P++F E+ LA G S+ ++ + +VD++FP +HG GED
Sbjct: 54 PSNFLLNQENPALIALNQSNRELAVVPGKASQQLVETTSQEMLGHVDVIFPIVHGTLGED 113
Query: 179 GGIQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
G +Q +L ++PFVG+ GS C DK + + G P L + V +
Sbjct: 114 GCLQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFVTLTRATVARTG 170
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVEL 294
+ V KL + VKP GSS+GV+ V D ++ A + L D +V++E
Sbjct: 171 FAE--VQGKLGL---PLFVKPANQGSSVGVS---KVTDEVEYAAAVELALSFDTKVLIES 222
Query: 295 FLEGGSEFTAIVLD----VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
+ G E VL V SG C +V+ ++Y KY+
Sbjct: 223 AVN-GREIECAVLGNEEAVASG--CGEIVV-----------------HSGFYSYDSKYID 262
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
+ P + IR A FQ LG AR+D +
Sbjct: 263 DKAAEVVVPANISVEASERIRALAVEAFQVLGCSGLARVDVFL----------------- 305
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
T+ G +L +IN + G + S + G ++S ++ +I A +
Sbjct: 306 TDGGEVLINEINSLPGFTRISMYPKLWQATGMTYSELVTRLIELALEK 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 174/471 (36%), Gaps = 136/471 (28%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P +A+ Q+V + + H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETTSQEMLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 720
S CMDK I+K + R L TP V + + E+ K
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRATVARTGFAEVQGK 177
Query: 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
L L VKPA G S GV+++ D Y A+E L SF
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKVT---DEVEYAAAVELAL------SF------------- 214
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
D + + N GN V CG + V
Sbjct: 215 ------------DTKVLIESAVNGREIECAVLGNEE------AVASGCGEI--------V 248
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 900
SG S + K+ + P +S EA ++ + L G +R+D F+
Sbjct: 249 VHSG-FYSYDSKYIDDKAAEVVVPAN--ISVEASERIRALAVEAFQVLGCSGLARVDVFL 305
Query: 901 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D GEVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 306 T-DGGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVTRLIELALEK 353
>gi|451334834|ref|ZP_21905405.1| D-alanine--D-alanine ligase [Amycolatopsis azurea DSM 43854]
gi|449422681|gb|EMD28053.1| D-alanine--D-alanine ligase [Amycolatopsis azurea DSM 43854]
Length = 316
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 151/380 (39%), Gaps = 72/380 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S ER +SL S R + ++ + L V + D L
Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSVALRAEGLTVEEWDTDAGL------------------ 47
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
LE L D +HG GE+G +Q VLE +VP+VGT S
Sbjct: 48 ---LERLRT-------------QRPDAAIVALHGGEGENGAVQTVLEMLDVPYVGTSSAG 91
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTR 258
CR+A+DK A ++ GF T +L S EL V + + G +++KP +
Sbjct: 92 CRRAWDKPTAKALVADTGFTTPDWVVLPHSTFR--ELGAQAVLDAMVDTLGLPLILKPDQ 149
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G V + G G D V+ E F+ G E V++ G + P
Sbjct: 150 GGSALGAQVVKEASEMPGAMVGCFAYG--DTVLAEKFVS-GVEVAVTVIEGEEGPEALP- 205
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+V++ + +++Y+ +Y + TP R ++ E A +
Sbjct: 206 -------------AVEIVPESGVYDYKARYT-AGLTDFFTPARISDDAAKAVGELAVAVH 251
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
++LGL D +R D E GT+ F +NL G+ +TS +
Sbjct: 252 RQLGLRDISRTDAVV-----------------AEDGTVYFLAVNLSPGLTETSIVPVAIE 294
Query: 439 KVGFSHSNILRTIIGHACSR 458
G + ++ ++G A SR
Sbjct: 295 AAGATLGSVFADLVGRAISR 314
Score = 40.0 bits (92), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 119/310 (38%), Gaps = 65/310 (20%)
Query: 623 SINEWI-------KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
++ EW +L + +A+HGG GE+G +Q++LE VPY G +
Sbjct: 37 TVEEWDTDAGLLERLRTQRPDAAIVALHGGEGENGAVQTVLEMLDVPYVGTSSAGCRRAW 96
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 735
DK T+ AL +AD G T + V + + + L L +KP + G
Sbjct: 97 DK-PTAKAL--VADTGFTTPDWVVLPHSTFRELGAQAVLDAMVDTLGLP-LILKPDQGGS 152
Query: 736 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795
+ G + A ++ A+ C A+G + ++ E FV
Sbjct: 153 ALGAQVVKEASEMP---GAMVGCF----------AYG---------DTVLAEKFVSG--- 187
Query: 796 LFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQ 854
VE+ V VI G+ G +P+V + + + ++
Sbjct: 188 ----------------------VEVAVTVIEGEEGP--EALPAVEIVPESGVYDYKARYT 223
Query: 855 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 914
G TP + +S +A + + L L SR DA V ++G V + VN
Sbjct: 224 AGLTDFFTP---ARISDDAAKAVGELAVAVHRQLGLRDISRTDAVV-AEDGTVYFLAVNL 279
Query: 915 VPGMTPSTVL 924
PG+T ++++
Sbjct: 280 SPGLTETSIV 289
>gi|378765581|ref|YP_005194041.1| D-alanine--D-alanine ligase [Pantoea ananatis LMG 5342]
gi|365185054|emb|CCF08004.1| D-alanine/D-alanine ligase [Pantoea ananatis LMG 5342]
Length = 365
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 163/413 (39%), Gaps = 79/413 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVG++ GG S+E +SL SA++++D I V ID+ Q + N ++
Sbjct: 5 RVGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQ--------GQWHLNDASN 56
Query: 139 FDFKLESLAQGFGSLSEFAEHLA-------------------ANVDIVFPTIHGRFGEDG 179
F E+ +L+ A+ +A + +D++FP +HG GEDG
Sbjct: 57 FLLNAEN--PSLIALNRTAKQVALIPGEPQNQIIDRKDAHPLSQLDVIFPVVHGTQGEDG 114
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
+Q +L ++PFVG+ + DK + G P + +++N+ ++
Sbjct: 115 SLQGLLRMASLPFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNKLDIEAV 174
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFL 296
L + +KP GSS+G VT A +L+ A D++V++E +
Sbjct: 175 IARFGL-----PLFIKPANQGSSVGVSKVTTAAAFRAALELAF-----RFDNKVLIEKGI 224
Query: 297 EGGSEFTAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
+ G E VL D C VV+ DA ++Y KY+
Sbjct: 225 K-GREIECAVLGNDYPEASPCGEVVV-----------------SDAFYSYDTKYISETGA 266
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P P V +IRE A F L AR+D ++ TE G
Sbjct: 267 HTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDVFY-----------------TEDG 309
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
I+ ++N + G S + G S+ +++ +I A R AS +
Sbjct: 310 EIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELALERHQQNASLKT 362
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 108/470 (22%), Positives = 177/470 (37%), Gaps = 130/470 (27%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
+ V ++FGG +SE +VSL S N+ + A + LL ID N D+
Sbjct: 4 QRVGIVFGGKSSEHEVSLQSAKNI---VDAIDKTRFEVVLLG--IDKQGQWHLN----DA 54
Query: 552 SSRVVWSLPYSLV-LRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFT 610
S+ ++ + SL+ L T ++V A +NQ++
Sbjct: 55 SNFLLNAENPSLIALNRTAKQV------------ALIPGEPQNQII-------------- 88
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
D D P+ +F VHG GEDG+LQ LL +P+ G V+
Sbjct: 89 --DRKDAHPLSQ------------LDVIFPVVHGTQGEDGSLQGLLRMASLPFVGSDVLG 134
Query: 671 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----- 725
S MDK + K + R L P + + +KL +
Sbjct: 135 SAVSMDK----------------DVTKRLLRDAGLKVAPWLSVTQAQMNKLDIEAVIARF 178
Query: 726 ---LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782
L +KPA G S GV+++ A + ALE
Sbjct: 179 GLPLFIKPANQGSSVGVSKVTTA---AAFRAALE-------------------------- 209
Query: 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE 842
L F + ++++ + + EI V+G S V V +
Sbjct: 210 -LAF-----------------RFDNKVLIEKGIKGREIECAVLGNDYPEASPCGEVVVSD 251
Query: 843 SGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVN 901
+ S + K+ TG + T PA I + A+D+ + + L A AL G +R+D F
Sbjct: 252 A--FYSYDTKYISETGAH-TVIPADIPA--AVDEAIREVALTAFTALSCFGLARVDVFYT 306
Query: 902 VDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D GE+++ EVNT+PG T + ++ L + + ++++L ER
Sbjct: 307 ED-GEIIVNEVNTLPGFT--NISMYPKLWQAAGLSYQDLITRLIELALER 353
>gi|383821009|ref|ZP_09976260.1| D-alanyl-alanine synthetase A [Mycobacterium phlei RIVM601174]
gi|383334040|gb|EID12483.1| D-alanyl-alanine synthetase A [Mycobacterium phlei RIVM601174]
Length = 374
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 169/418 (40%), Gaps = 71/418 (16%)
Query: 69 AKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DR 119
A++ G +RV ++ GG S+E IS SA S+L ++ + V I D
Sbjct: 3 ARQDSGSERVRVAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAVGITPEGAWMLTDA 62
Query: 120 NLNAYAISSAQVYSNT---------PADFDFK--LESLAQGFGSLSEFAEHLAANVDIVF 168
AI+ Q+ T PAD + L SL Q G+L A+VD+VF
Sbjct: 63 TPETLAITDGQLPEVTRSSGTELALPADPARRGQLLSLGQDTGTL-------LASVDVVF 115
Query: 169 PTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG 228
P +HG +GEDG IQ +LE VP+VG G A DK E +K+ + + L G
Sbjct: 116 PVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDK-----EFTKK--LLTAAGLPIG 168
Query: 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD 288
V + + V VKP R GSSIGV+ D L++A D
Sbjct: 169 DHVVLRPRDATLSLDDRERLGLPVFVKPARGGSSIGVSRVT-TWDDLEQAIAQARRH-DP 226
Query: 289 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR----EKDAIFNY 344
+VVVE +EG +C + VE G + V +D +++
Sbjct: 227 KVVVEAAVEGRE------------LECGVLEFPDRRVEASVVGEIRVAGVRGREDGFYDF 274
Query: 345 RRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSS 404
KYL P + V +++RE A F + AR+D +FL
Sbjct: 275 ATKYL-EDAAELDVPAKVEDDVADAVREMAIQAFHAIDCQGLARVD-FFL---------- 322
Query: 405 ETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
TE G ++ +IN + G S + + G + +L T++ A +R L
Sbjct: 323 ------TEDGPVI-NEINTMPGFTTISMYPRMWAASGVDYPTLLATMVDTALNRGTGL 373
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 58/120 (48%), Gaps = 28/120 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV+AS MDK T L + D VL
Sbjct: 114 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLLTAAGLPIGDHVVL 173
Query: 694 -----TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
T++ D R + L P+ VKPAR G S GV+R+ +DL
Sbjct: 174 RPRDATLSLDDRER---LGLPVF----------------VKPARGGSSIGVSRVTTWDDL 214
>gi|117928793|ref|YP_873344.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
gi|117649256|gb|ABK53358.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
Length = 377
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 131/310 (42%), Gaps = 55/310 (17%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
+D+ FP +HG FGEDG IQ + E +P+VG+G A A DK + G VP
Sbjct: 112 RIDVAFPVLHGPFGEDGTIQGLFEMAGIPYVGSGVFASAAAMDKQFMKVLFVGAGLPDVP 171
Query: 223 SFLLQGSE-------VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID-- 273
++ E V ES S F V VKP R GSS+ VT + D
Sbjct: 172 HVVVTPDEWRTDPAAVRESVASLGF----------PVFVKPARGGSSVAVTKVHKPADVD 221
Query: 274 -SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 332
++++A+ +D +V+VE ++G ++ DV G P V +P E+
Sbjct: 222 EAIERAR-----EVDPKVLVERAIDGREIEVGVLDDVHGG---APKVSVPAEIL------ 267
Query: 333 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 392
VR ++ +++ KYL Q P P V+ ++ A + ++ LG AR+D +
Sbjct: 268 --VRGRE-FYDFEAKYL-DQGTVITIPASLPPAVLQTVNRYAVIAYRALGCEGLARVD-F 322
Query: 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
F+ T G + ++N + G TS + G + ++ ++
Sbjct: 323 FV----------------TATGEVFVNELNTMPGFTPTSVFPRVWQATGLEYPALVDYLV 366
Query: 453 GHACSRFPNL 462
A R P L
Sbjct: 367 QLALRRRPGL 376
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 75/296 (25%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG GEDGT+Q L E G+PY G GV AS MDK + VL +
Sbjct: 117 FPVLHGPFGEDGTIQGLFEMAGIPYVGSGVFASAAAMDK----------QFMKVLFVGAG 166
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLCCAEDLTVYV 752
+ ++ TP D W + ++ + VKPAR G S V ++ D+
Sbjct: 167 LPDVPHVVVTP--DEWRTDPAAVRESVASLGFPVFVKPARGGSSVAVTKVHKPADVD--- 221
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ RA E D + ++ +
Sbjct: 222 ------------EAIERAR-------------------EVDPKVLVERAIDGR------- 243
Query: 813 GNSRWVEITVGVIGKC--GSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPASIM 869
EI VGV+ G+ +P+ + + E K+ GT I + PAS+
Sbjct: 244 ------EIEVGVLDDVHGGAPKVSVPAEILVRGREFYDFEAKYLDQGTVITI---PASL- 293
Query: 870 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
A+ + R +IA AL EG +R+D FV GEV + E+NT+PG TP++V
Sbjct: 294 -PPAVLQTVNRYAVIAYRALGCEGLARVDFFVTA-TGEVFVNELNTMPGFTPTSVF 347
>gi|118617561|ref|YP_905893.1| D-alanyl-alanine synthetase A [Mycobacterium ulcerans Agy99]
gi|166198494|sp|A0PQ03.1|DDL_MYCUA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|118569671|gb|ABL04422.1| d-alanine--D-alanine ligase DdlA [Mycobacterium ulcerans Agy99]
Length = 373
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 168/406 (41%), Gaps = 53/406 (13%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------D 118
M+ +R G LRV ++ GG S E IS SA S+L ++ V I D
Sbjct: 1 MSGSSRRGERLRVAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTD 60
Query: 119 RNLNAYAISS---AQVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGR 174
N +A AI+ +V S + + + G SL A + A+VD+VFP +HG
Sbjct: 61 GNPDALAITDRRLPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGP 120
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE--VN 232
+GEDG IQ +LE VP+VG G A DK S G P +L+ S ++
Sbjct: 121 YGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLD 180
Query: 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 292
EL + VKP R GSSIGV+ D L A D +V+V
Sbjct: 181 REELQRLGL---------PAYVKPARGGSSIGVS-RVSSFDELPAAIAAARRH-DPKVIV 229
Query: 293 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
E + G E VL+ G + T E++ G V RE D +++ KYL
Sbjct: 230 EAAIN-GRELECGVLEFPDGR-----LEASTLGEIRVAG-VRGRE-DGFYDFETKYL-DD 280
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
P + V +++R+ A F+ + AR+D +FL V + T G
Sbjct: 281 AAELDVPAKVEDDVADAVRQLAIRAFEAIDCQGLARVD-FFLTDDGPVINELNTMPG--- 336
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
FT I++ M S G + +L T++ A SR
Sbjct: 337 -----FTTISMYPRMWVAS---------GVDYPTLLATMVETALSR 368
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT----SLALNHLADLGV 692
VF +HG GEDGT+Q LLE GVPY G GV+AS MDK T S A + V
Sbjct: 112 VVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAV 171
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
L ++ +E+L + + VKPAR G S GV+R+ ++L +
Sbjct: 172 LRPSRQSLDREELQRLGL--------------PAYVKPARGGSSIGVSRVSSFDELPAAI 217
Query: 753 KA 754
A
Sbjct: 218 AA 219
>gi|111225171|ref|YP_715965.1| D-alanyl-alanine synthetase A [Frankia alni ACN14a]
gi|111152703|emb|CAJ64446.1| D-alanine-D-alanine ligase A [Frankia alni ACN14a]
Length = 367
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 160/395 (40%), Gaps = 62/395 (15%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R +R+ L+ GG S E IS SA VL + D V ID + + A+ T
Sbjct: 6 RRIRLALLFGGRSTEHAISCVSAGGVLRALDPDVYDVALVGIDPSGRWVFMPDAKAL--T 63
Query: 136 PADFDFKLESLAQGFGSL---------------SEFAEHLAANVDIVFPTIHGRFGEDGG 180
PAD + ++G + E + +VD+VFP +HG FGEDG
Sbjct: 64 PADGALPQVTASRGTSVVLAPDPTAARWYPRDGGESIQGPLGDVDVVFPLLHGPFGEDGT 123
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNESELSNW 239
IQ +LE VP+VG+G A A DK + G P +++ G ++E++
Sbjct: 124 IQGLLEMAGVPYVGSGVFASAAAMDKQHMKSMLQAAGLPVGPYAVVRAGQTLSEADQDRL 183
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTV--AYGVIDSLKKAKGIILEGIDDRVVVELFLE 297
+ V VKP R GSSIG++ A+ +D+ K D +V+VE +
Sbjct: 184 GL---------PVFVKPARGGSSIGISRVDAWADLDTAVKTA----RANDPKVLVEAAIT 230
Query: 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357
G E VL G V P E+ V +++ KY+ + Q +
Sbjct: 231 -GREIECGVLGRLDGPGAQASV--PAEIT--------VTSATGFYDFEAKYV-SDQTRFD 278
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P R + +R+ A F+ L AR+D + P HV +
Sbjct: 279 IPARLSPSALARVRQVAVAAFEALDCAGLARVDVFVTPDD-HV----------------V 321
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
++N + G TS + + G ++ +++ ++
Sbjct: 322 VNEVNTMPGFTPTSMFPRMWAASGITYPDLVDRLV 356
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 124/296 (41%), Gaps = 77/296 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE GVPY G GV AS MDK H+ K
Sbjct: 110 VFPLLHGPFGEDGTIQGLLEMAGVPYVGSGVFASAAAMDK-------QHM---------K 153
Query: 698 DVRRKEDLLKTP--IVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + L P +V L+ Q + + VKPAR G S G++R+ DL V
Sbjct: 154 SMLQAAGLPVGPYAVVRAGQTLSEADQDRLGLPVFVKPARGGSSIGISRVDAWADLDTAV 213
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K +RA N P ++L + T +
Sbjct: 214 KT-------------ARA-------NDP-------------KVLVEAAITGR-------- 232
Query: 813 GNSRWVEITVGVIGKC---GSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPASI 868
EI GV+G+ G+ S+ +TV + E K+ T ++ PA
Sbjct: 233 ------EIECGVLGRLDGPGAQASVPAEITVTSATGFYDFEAKYVSDQTRFDI---PAR- 282
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+S AL + +Q AL G +R+D FV D+ V++ EVNT+PG TP+++
Sbjct: 283 LSPSALARVRQVAVAAFEALDCAGLARVDVFVTPDD-HVVVNEVNTMPGFTPTSMF 337
>gi|392532097|ref|ZP_10279234.1| D-alanine--D-alanine ligase [Carnobacterium maltaromaticum ATCC
35586]
gi|414082686|ref|YP_006991389.1| D-alanine--D-alanine ligase [Carnobacterium maltaromaticum LMA28]
gi|412996265|emb|CCO10074.1| D-alanine--D-alanine ligase [Carnobacterium maltaromaticum LMA28]
Length = 359
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/402 (25%), Positives = 165/402 (41%), Gaps = 51/402 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--NLNAYAISSAQVYSNT 135
+++ LI GG SAE IS+ +A S++ + V+ YI + + + V ++
Sbjct: 1 MKISLIYGGKSAEHDISILTAFSIIKEVYYKYYEVQPIYITKAGQWIKGPVLTEPVTNHE 60
Query: 136 PADFDFKLESLA-QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
F F E+ Q + L ++FP +HG GEDG +Q + E N+P+VG
Sbjct: 61 QLKFKFNDETTNDQQLSGVEIQPTSLKEEDAVIFPVLHGPNGEDGTVQGLFEVINMPYVG 120
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE--VNESELSNWFVTNKLDPNSGKV 252
TG A DK + + G VP + +E +E ++ + L P +
Sbjct: 121 TGVLASACGMDKIISKYLFQQAGIPQVPYVAVLKNEWLRDEEQVFMRCEGSLLYP----M 176
Query: 253 VVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
VKP GSS+G+T A + +I ++K A D R+VV E G E I + V
Sbjct: 177 FVKPANMGSSVGITKAENRFELISAIKTAL-----KYDRRIVV----EQGIEAREIEVAV 227
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
D H T V + SVD ++Y KYL T V P P V
Sbjct: 228 LGNADVH------TSVPGEIVKSVD------FYDYDSKYL-TNDVQLQIPALVPDSVSAQ 274
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+RE A+ F+ L +R D +F+ ++ +F ++N + G Q
Sbjct: 275 LREYAAAAFEVLDGSGLSRCD-FFVTANDEIF----------------INEVNTMPGFTQ 317
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH 471
S G S+ +++ +I A RF +Y S
Sbjct: 318 FSMYPLLWENTGLSYGDLVEELIQLALRRFEERQAYQMKSDE 359
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 117/302 (38%), Gaps = 86/302 (28%)
Query: 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 691
KE A +F +HG GEDGT+Q L E +PY G GV+AS MDK+
Sbjct: 87 KEEDAVIFPVLHGPNGEDGTVQGLFEVINMPYVGTGVLASACGMDKI------------- 133
Query: 692 VLTINKDVRRKEDLLKTPIVDI----W--HELTSKLQCK-----TLCVKPARDGCSTGVA 740
I+K + ++ + + P V + W E ++C+ + VKPA G S G+
Sbjct: 134 ---ISKYLFQQAGIPQVPYVAVLKNEWLRDEEQVFMRCEGSLLYPMFVKPANMGSSVGIT 190
Query: 741 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800
+ AE+ + A++ L
Sbjct: 191 K---AENRFELISAIKTAL----------------------------------------- 206
Query: 801 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
K R++ + EI V V+G +H+ +P VK S D + K+ +
Sbjct: 207 ---KYDRRIVVEQGIEAREIEVAVLGNA-DVHTSVPGEIVK-SVDFYDYDSKYL-TNDVQ 260
Query: 861 LTPPPASIMSTEALDKCKQRIELIANALQL---EGFSRIDAFVNVDNGEVLIIEVNTVPG 917
L P S A Q E A A ++ G SR D FV N E+ I EVNT+PG
Sbjct: 261 LQIPALVPDSVSA-----QLREYAAAAFEVLDGSGLSRCDFFVTA-NDEIFINEVNTMPG 314
Query: 918 MT 919
T
Sbjct: 315 FT 316
>gi|319947394|ref|ZP_08021626.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641]
gi|417918993|ref|ZP_12562537.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
australis ATCC 700641]
gi|319746334|gb|EFV98595.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641]
gi|342835144|gb|EGU69401.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
australis ATCC 700641]
Length = 348
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 173/401 (43%), Gaps = 70/401 (17%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
MAKE ++ L+ GG SAER +S+ SA SV+ I D V Y+I + A
Sbjct: 1 MAKE-------KIVLLYGGRSAEREVSVLSAESVMRAINYDKYSVETYFITQ---AGDFI 50
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
Q + PA+ + + + + + + + +VFP +HG GEDG +Q LE
Sbjct: 51 KTQTFEEKPAETERLMTNETIDWDAKAT-PSSIYQEGAVVFPVLHGPMGEDGSVQGFLEV 109
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLD 246
+P+VG + A DK + G VP +L+G ++ E++++ + +L
Sbjct: 110 LKLPYVGCDILSSSVAMDKITTKRVLESAGIPQVPYVAVLEGDDL-EAKIT--LIEKEL- 165
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ V KP+ GSS+G++ A + L+K+ + + D RV+VE +G
Sbjct: 166 --TYPVFTKPSNMGSSVGISKAENQAE-LRKSLELAFK-YDSRVLVE---QG-------- 210
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHT 358
++ E+E+ G+ DV+ KD A ++Y KY+ ++
Sbjct: 211 -------------VVAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMAI 256
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P P V ++R A L F+ +G +R D ++ TE G I
Sbjct: 257 PAEIPAEVAATMRHNAELAFRAIGGKGLSRCDFFY-----------------TEDGGIYL 299
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G ++ +++ ++ A F
Sbjct: 300 NELNTMPGFTQWSMYPLLWDNMGLAYPDLIERLVELAKETF 340
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 114/287 (39%), Gaps = 67/287 (23%)
Query: 636 ATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTI 695
A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+ +
Sbjct: 87 AVVFPVLHGPMGEDGSVQGFLEVLKLPYVGCDILSSSVAMDKITTKRVLE---SAGIPQV 143
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+ D L+ I I ELT + KP+ G S G+++ AE+ K+L
Sbjct: 144 PYVAVLEGDDLEAKITLIEKELTY-----PVFTKPSNMGSSVGISK---AENQAELRKSL 195
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
E L F K R++ +
Sbjct: 196 E---------------------------LAF-----------------KYDSRVLVEQGV 211
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMSTE 872
EI VG++G + S +P VK+ E K+ I + P PA + +T
Sbjct: 212 VAREIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYEAKYIDNK-ITMAIPAEIPAEVAAT- 267
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ EL A+ +G SR D F D G + + E+NT+PG T
Sbjct: 268 ----MRHNAELAFRAIGGKGLSRCDFFYTEDGG-IYLNELNTMPGFT 309
>gi|271970545|ref|YP_003344741.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
gi|270513720|gb|ACZ91998.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
Length = 318
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 126/303 (41%), Gaps = 44/303 (14%)
Query: 160 LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFI 219
LA D VF T+HG GEDG I+ VLE +VP+VG G ACR AFDK A + G
Sbjct: 53 LADPPDAVFVTLHGGAGEDGAIRSVLELLSVPYVGAGPDACRVAFDKPTAKTVVRSVGLR 112
Query: 220 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAK 279
T S L E ++ +T ++ + VKP+R GS++G ++ D
Sbjct: 113 TPDSVTLP-KETFHDLGASTVLTRIVERLGLPLFVKPSRGGSALGASIVRAAEDLPAAMV 171
Query: 280 GIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKD 339
G G D ++E +E G E V+D+G G P+ L P E+ V +K
Sbjct: 172 GCFAYG--DTALIERCIE-GVEVAVSVVDLGGG----PMALPPVEI---------VPDK- 214
Query: 340 AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR----IDGWFLP 395
+++Y +Y + P R + E A LGL D +R +DG LP
Sbjct: 215 GVYDYAARYT-AGHTEFFAPARLSPEAAAACAEMAVTAHTALGLRDISRTDLIVDGDGLP 273
Query: 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
F ++N+ GM +TS L G + R ++ A
Sbjct: 274 H---------------------FLEVNVAPGMTETSLLPMAVEAAGDDLGTLCRVLLEQA 312
Query: 456 CSR 458
+R
Sbjct: 313 AAR 315
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 112/287 (39%), Gaps = 56/287 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF+ +HGG GEDG ++S+LE VPY G G A + DK A + +G+ T +
Sbjct: 60 VFVTLHGGAGEDGAIRSVLELLSVPYVGAGPDACRVAFDK---PTAKTVVRSVGLRTPDS 116
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
KE + + +L L VKP+R G + G + + AEDL A+
Sbjct: 117 VTLPKETFHDLGASTVLTRIVERLGLP-LFVKPSRGGSALGASIVRAAEDLP---AAMVG 172
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
C A+G + + E +E
Sbjct: 173 CF----------AYG---------DTALIERCIE-------------------------G 188
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
VE+ V V+ G +L P V + G + ++ G P + +S EA C
Sbjct: 189 VEVAVSVVDLGGGPMALPPVEIVPDKG-VYDYAARYTAGHTEFFAP---ARLSPEAAAAC 244
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ AL L SR D V+ D G +EVN PGMT +++L
Sbjct: 245 AEMAVTAHTALGLRDISRTDLIVDGD-GLPHFLEVNVAPGMTETSLL 290
>gi|255325982|ref|ZP_05367072.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296]
gi|255296997|gb|EET76324.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296]
Length = 372
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 159/395 (40%), Gaps = 50/395 (12%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISS---AQVYSNTP 136
V L+CGG S+E ISL +A VL I V I R+ Y A++ + T
Sbjct: 7 VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLA-----------ANVDIVFPTIHGRFGEDGGIQEVL 185
+F E Q F + L A VD+VFP +HG FGEDG +Q +L
Sbjct: 67 GTAEFP-EGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLL 125
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
E ++ +VG G A DK+ + G P ++ + + + ++
Sbjct: 126 EMADLRYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQ--ILERV 183
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFT 303
+ VKPTRAGSS G+T +DS+++ I E D ++++E + G E
Sbjct: 184 LKLGFPMFVKPTRAGSSFGIT----KVDSVEELVPAIEEARRHDPKIIIEAGIV-GREIE 238
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VLD G P P E+E+ V + +++ KY+ P P
Sbjct: 239 CAVLDGHHG--EMPRASYPGEIEV-------VDQDHGFYDFEAKYVSESSAVTVCPANLP 289
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V +RE L + F +DG L S + TE G ++ ++N
Sbjct: 290 QDVQERLRE--------LAVKAFLALDGEGL---------SRADFFYTEDGRLVINEVNT 332
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S G S+++++ ++ A R
Sbjct: 333 MPGFTPISMYKTMWENTGISYTDLISELLTLAMER 367
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 131/322 (40%), Gaps = 65/322 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTIN 696
VF +HG GEDGT+Q LLE + Y G GV AS MDK +A ++G +
Sbjct: 107 VFPLLHGPFGEDGTVQGLLEMADLRYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVV 166
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ R+ E + I+ E KL + VKP R G S G+ ++ E+L V A+E
Sbjct: 167 TN-RQWEHEDREQIL----ERVLKLGFP-MFVKPTRAGSSFGITKVDSVEEL---VPAIE 217
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
E +R H P+I+I V R
Sbjct: 218 E----------ARRHD--------PKIIIEAGIV------------------------GR 235
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
+E V H MP + +++ + F ++ A + L +
Sbjct: 236 EIECAV-----LDGHHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQ 290
Query: 877 -CKQRIELIAN----ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
++R+ +A AL EG SR D F ++G ++I EVNT+PG TP + +++ + E
Sbjct: 291 DVQERLRELAVKAFLALDGEGLSRAD-FFYTEDGRLVINEVNTMPGFTP--ISMYKTMWE 347
Query: 932 QPPMYPHQFFRKVLDLGSERFL 953
+ ++L L ER L
Sbjct: 348 NTGISYTDLISELLTLAMERPL 369
>gi|184200683|ref|YP_001854890.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
gi|229485959|sp|B2GFL1.1|DDL_KOCRD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|183580913|dbj|BAG29384.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
Length = 383
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 160/401 (39%), Gaps = 63/401 (15%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLV--------RCYYIDRNLNAYAISSAQV 131
+ ++ GG S+E ISL +ARSVL I D V +++ A+ Q
Sbjct: 19 IAVVFGGRSSEHSISLITARSVLRAIDRDRWDVVSVGISTDGAWFLCSQEELEALLDDQP 78
Query: 132 YSNTPADFDFKLESLAQGFGSL--SEFAEHLAA-----NVDIVFPTIHGRFGEDGGIQEV 184
+ P L G L + +EH A ++D VFP +HG FGEDG +Q +
Sbjct: 79 MAQLPVGVHRVSLPLQTGDSRLLIHDTSEHGAPLSRGRHIDAVFPLLHGPFGEDGTLQGM 138
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
LE ++P+VG G A DK+ L G P ++ L V
Sbjct: 139 LELADLPYVGCGVAASAIGMDKHFMKLAFQAAGLEVGPYTVVHDRTWRTDPLG---VREA 195
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEF 302
+ V VKP RAGSS G+T +D + I D ++VVE ++ G E
Sbjct: 196 VAELGFPVFVKPARAGSSFGIT----RVDEPSQLDAAIATAREHDLKLVVEAGID-GREI 250
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL G G D LP E+E+ A++++ KY+ + P R
Sbjct: 251 ECAVLG-GHGTD-EARASLPGEIEVHGH---------ALYDFEAKYVESDGATLSCPARL 299
Query: 363 PIVVINSIREGASLLF-----QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P VI+++R A F + L CDF F +++ + +L
Sbjct: 300 PEHVIDTLRRDAVRAFHAVDGEGLSRCDF--------------FVTADER--------VL 337
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+IN + G S + + G +S ++ +I A R
Sbjct: 338 INEINTMPGFTPISMYPRMWAASGIDYSALIDELITLALER 378
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 109/286 (38%), Gaps = 60/286 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTIN 696
VF +HG GEDGTLQ +LE +PY G GV AS MDK LA ++G T+
Sbjct: 121 VFPLLHGPFGEDGTLQGMLELADLPYVGCGVAASAIGMDKHFMKLAFQAAGLEVGPYTVV 180
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
D + D L E ++L VKPAR G S G+ R+ L +
Sbjct: 181 HDRTWRTDPLGV------REAVAELGFPVF-VKPARAGSSFGITRVDEPSQLDAAIATAR 233
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
E L+ L+ E ++
Sbjct: 234 EHDLK----------------------LVVEAGIDGR----------------------- 248
Query: 817 WVEITVGVIGKCGS--MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G G+ + +P + E K+ G L+ P + + +
Sbjct: 249 --EIECAVLGGHGTDEARASLPGEIEVHGHALYDFEAKYVESDGATLSCP--ARLPEHVI 304
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
D ++ +A+ EG SR D FV D VLI E+NT+PG TP
Sbjct: 305 DTLRRDAVRAFHAVDGEGLSRCDFFVTADE-RVLINEINTMPGFTP 349
>gi|421485328|ref|ZP_15932887.1| D-alanine--D-alanine ligase [Achromobacter piechaudii HLE]
gi|400196247|gb|EJO29224.1| D-alanine--D-alanine ligase [Achromobacter piechaudii HLE]
Length = 316
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 153/380 (40%), Gaps = 78/380 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S + V A++SA V ++
Sbjct: 7 KVGVLYGGRSAEREVSLMSGKGVQQ---------------------ALASAGVDAHL--- 42
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G SL+E A A D VF +HGR+GEDG IQ LE +P+ G+G
Sbjct: 43 FD-------TGERSLAELA---AEGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPM 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK + + G T P F EV +++ V ++L S +++KP
Sbjct: 93 ASALAMDKTMTKRVLLQHGLPT-PDF-----EVLDADTELRLVPDRL---SLPLIIKPPH 143
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G+T G D +K+A D V+ E F+ G E T VL G G PV
Sbjct: 144 EGSTVGITKVVGYSD-MKEAYAAA-ACYDSEVLAEQFIT-GRELTVAVLGSGKGARALPV 200
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+++ ++Y KY + Y P P V + A +
Sbjct: 201 --------------IEIAAPGGNYDYEHKYF-SDDTQYFCPANLPPEVAEDVSAIAVKAY 245
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG + R D + L W ++N GM S + A
Sbjct: 246 RALGCEGWGRAD-FMLDRDNR------------PW----LLELNTSPGMTSHSLVPMAAK 288
Query: 439 KVGFSHSNILRTIIGHACSR 458
+G S++++ I+ A +
Sbjct: 289 AMGISYADLCVAILSEASCK 308
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 120/306 (39%), Gaps = 84/306 (27%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 686
+LA E VFIA+HG GEDGT+Q LE G+PYTG G MAS MDK T + L H
Sbjct: 52 ELAAEGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRVLLQHG 111
Query: 687 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
D VL + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPDFEVLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 745 AEDLT-VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
D+ Y A C E+L E F+ E
Sbjct: 156 YSDMKEAYAAA--ACY--------------------DSEVLA-EQFITGRE--------- 183
Query: 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF-----QGGTG 858
+TV V+G G +P + + G E K+ Q
Sbjct: 184 ----------------LTVAVLGS-GKGARALPVIEIAAPGGNYDYEHKYFSDDTQYFCP 226
Query: 859 INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 918
NL P A +S A+ + AL EG+ R D ++ DN ++E+NT PGM
Sbjct: 227 ANLPPEVAEDVSAIAVKAYR--------ALGCEGWGRADFMLDRDN-RPWLLELNTSPGM 277
Query: 919 TPSTVL 924
T +++
Sbjct: 278 TSHSLV 283
>gi|302525004|ref|ZP_07277346.1| D-alanylalanine synthetase [Streptomyces sp. AA4]
gi|302433899|gb|EFL05715.1| D-alanylalanine synthetase [Streptomyces sp. AA4]
Length = 365
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 167/406 (41%), Gaps = 68/406 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI-------------------D 118
+RV ++ GG S+E IS SA SV+ ++ D V +
Sbjct: 6 IRVAVVFGGRSSEHTISCLSAGSVISNLDPDRFEVLPVGVTPSGGWVLGTGDPQQLSIRG 65
Query: 119 RNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGED 178
R L + A V + P + + Q A + VD+VFP +HG FGED
Sbjct: 66 RELPSVESGRALVLAGDPTSRELRTVDPGQ--------ATEVLGTVDVVFPVLHGAFGED 117
Query: 179 GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF-ITVPSFLLQG-SEVNESEL 236
G IQ +LE ++P+VG G A A DK A ++ +G + + L +G S + E++
Sbjct: 118 GTIQGLLELADLPYVGPGVFASAAAMDKEYAKKLLAAEGLPVGTYAALRRGQSTLAEADR 177
Query: 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL 296
+ V VKP+RAGSS+G++ D A + D +V+VE +
Sbjct: 178 ERLGL---------PVFVKPSRAGSSVGISRVADWAD--LDAAIELARRTDPKVLVEAAV 226
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
G E VL+ G LP E+ + +G +DA +++ KYL +
Sbjct: 227 R-GREVECGVLEFPDG---RVEASLPAEIRVLAEG------EDAWYDFETKYL-GEDAEL 275
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P + + + +R A F+ L AR+D +F+ TE G +
Sbjct: 276 DIPAKLDDALTDRLRAMAVEAFRALDCQGLARVD-FFV----------------TEEGDL 318
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+ ++N + G S + G + +L T+I A +R L
Sbjct: 319 VINEVNTMPGFTTKSAYPKMWEVTGVDYPTLLSTLIDTALARGTGL 364
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 116/297 (39%), Gaps = 87/297 (29%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV-LTIN 696
VF +HG GEDGT+Q LLE +PY GPGV AS MDK A LA G+ +
Sbjct: 106 VFPVLHGAFGEDGTIQGLLELADLPYVGPGVFASAAAMDK---EYAKKLLAAEGLPVGTY 162
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+RR + L E + + VKP+R G S G++R+ DL +
Sbjct: 163 AALRRGQSTLA--------EADRERLGLPVFVKPSRAGSSVGISRVADWADLDAAI---- 210
Query: 757 ECLLRIPPNSFSRAH--------GMIEMPNP------PPEILIFEPFVETDEILFSSQST 802
E R P A G++E P+ P EI
Sbjct: 211 ELARRTDPKVLVEAAVRGREVECGVLEFPDGRVEASLPAEI------------------- 251
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
R++ +G W + +G+ + +P+ +L ++ +
Sbjct: 252 -----RVLAEGEDAWYDFETKYLGEDAELD--IPAKLDD------ALTDRLRA------- 291
Query: 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
M+ EA AL +G +R+D FV + G+++I EVNT+PG T
Sbjct: 292 ------MAVEAF-----------RALDCQGLARVDFFVT-EEGDLVINEVNTMPGFT 330
>gi|325000509|ref|ZP_08121621.1| D-alanyl-alanine synthetase A [Pseudonocardia sp. P1]
Length = 356
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 169/394 (42%), Gaps = 61/394 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-----VY 132
+RV ++ GG S+E IS SA SVL H+ + V I R+ A+ + +
Sbjct: 6 VRVAVVFGGRSSEHAISCVSAGSVLTHLDPERFEVVPVGISRD-GAWVTGPSDPRELGIS 64
Query: 133 SNTPADFDFKLESLA----QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
+ D ++L G G + A + VD+VFP +HG FGEDG IQ +LE
Sbjct: 65 GRELPEVDGTSDALVLPGEPGRGLIRLDAGEALSQVDVVFPILHGAFGEDGTIQGLLEMA 124
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNESELSNWFVTNKLDP 247
+P+VG G A DK A + +G +L+ G+++ ++ +
Sbjct: 125 GLPYVGAGVLASAVGMDKEFAKKLLRAEGLNVADGIVLRPGTDIGFADRDRLGL------ 178
Query: 248 NSGKVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+ VKP RAGSS+GVT G+ ++ +A+ D +V+VE + G E
Sbjct: 179 ---PLFVKPARAGSSMGVTRVTDPAGLDAAIAEAR-----EHDPKVLVESAVP-GREVEC 229
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL+ G V EL++ G +++ KYL ++ P +
Sbjct: 230 AVLEFPDG-----SVRASLPAELRYNGE--------FYDFESKYLDVSEL--EIPAKLDD 274
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ +S+R A F+ L + AR+D +F+ T+ G I ++N +
Sbjct: 275 EITDSVRWKAVTAFRALDVQGLARVD-FFV----------------TDDGHITVNEVNTM 317
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +S + + G + +L T++ A +R
Sbjct: 318 PGFTPSSAFPKMWAVTGLDYGELLTTMVETALAR 351
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 118/287 (41%), Gaps = 63/287 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE G+PY G GV+AS MDK A L G+ +
Sbjct: 103 VFPILHGAFGEDGTIQGLLEMAGLPYVGAGVLASAVGMDK---EFAKKLLRAEGLNVADG 159
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V R P DI +L L VKPAR G S GV R+ L + E
Sbjct: 160 IVLR-------PGTDIGFADRDRLGLP-LFVKPARAGSSMGVTRVTDPAGLDAAIAEARE 211
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
++ ++E P E VE + F
Sbjct: 212 HDPKV----------LVESAVPGRE-------VECAVLEFPD------------------ 236
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
GS+ + +P+ ++ +G+ E K+ + + + PA + E D
Sbjct: 237 -----------GSVRASLPA-ELRYNGEFYDFESKYLDVSELEI---PAK-LDDEITDSV 280
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ + AL ++G +R+D FV D+G + + EVNT+PG TPS+
Sbjct: 281 RWKAVTAFRALDVQGLARVDFFVT-DDGHITVNEVNTMPGFTPSSAF 326
>gi|255100754|ref|ZP_05329731.1| putative D-alanine:D-alanine ligase (putative
vancomycin/teicoplanin A-type resistance protein)
[Clostridium difficile QCD-63q42]
Length = 366
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 171/404 (42%), Gaps = 77/404 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI--SSAQVYSNTP 136
++ +I GG S E +SL SA +VL+++ + + I R N Y + +NT
Sbjct: 5 KIAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNWYHYIGDYNNIQNNTW 64
Query: 137 ADFDFKL--------------------ESLAQGF--GSLSEFAEH--LAANVDIVFPTIH 172
+ D + ++++Q S E E+ +D VFP +H
Sbjct: 65 FERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLH 124
Query: 173 GRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSE- 230
G+ GEDG +Q + E + +G G+ + DK D S ++ I VP S LL+ S+
Sbjct: 125 GKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDK-DKSHKLVHSEGIKVPKSILLKYSDK 183
Query: 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRV 290
N +ELS + + +KP RAGSS G++ Y KK + +V
Sbjct: 184 FNVAELSKDL--------TYPLFIKPVRAGSSFGISKIY------KKE--------ELQV 221
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY- 348
V+L E +E I+ + GF+ VL ++ G VD + F+Y KY
Sbjct: 222 AVDLAFEHDNE--VIIEENIDGFEVGCAVLGNNDL---LVGRVDEIELSKGFFDYTEKYT 276
Query: 349 LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKY 408
L + ++ H P R + I+E A ++++ LG FAR+D + PS
Sbjct: 277 LKSSKI--HMPARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS------------ 322
Query: 409 GSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
G I+F ++N I G S +G S IL II
Sbjct: 323 -----GEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKII 361
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 105/263 (39%), Gaps = 45/263 (17%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSS--GMDANITDP 549
+++ VIFGG+++E VSL S V NL ++ P + + G NI +
Sbjct: 4 KKIAVIFGGNSTEYDVSLQSAFAVLENLNT-EKYDIIPIGITREGNWYHYIGDYNNIQNN 62
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
R +P + + V IE + PD + +N + N +E + +
Sbjct: 63 TWFERDTDIIPVIV----SQNRVKNGIIEFLIPDAVS-----QNHIPNSAIESCENDIKY 113
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
T D VF +HG GEDGT+Q L E G+ G G +
Sbjct: 114 TKLDF-----------------------VFPVLHGKNGEDGTVQGLFELAGIQVIGCGTL 150
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
+S CMDK S L H + V K LLK EL+ L L +K
Sbjct: 151 SSALCMDK-DKSHKLVHSEGIKV--------PKSILLKYSDKFNVAELSKDL-TYPLFIK 200
Query: 730 PARDGCSTGVARLCCAEDLTVYV 752
P R G S G++++ E+L V V
Sbjct: 201 PVRAGSSFGISKIYKKEELQVAV 223
>gi|398817983|ref|ZP_10576582.1| D-alanine--D-alanine ligase [Brevibacillus sp. BC25]
gi|398028781|gb|EJL22284.1| D-alanine--D-alanine ligase [Brevibacillus sp. BC25]
Length = 427
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/402 (24%), Positives = 168/402 (41%), Gaps = 60/402 (14%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS 133
G + +R+G+I GG S+E +SL +A S++ + + V Y+ L+ ++ +
Sbjct: 54 GNQKIRLGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYV--QLDGSWVTGETLAG 111
Query: 134 NTPADFD-FKLESLAQGFGSLSEFAEHLA------------ANVDIVFPTIHGRFGEDGG 180
P + +L + +E + LA +D+VFP +HG FGEDG
Sbjct: 112 QLPDKIEALRLSAKTPAITETTETGQELAIASKQGSLFAMNEQMDVVFPVVHGPFGEDGT 171
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE N+P+VGTG A DK+ ++ G V L S+ + +
Sbjct: 172 IQGLLELANIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDD--- 228
Query: 241 VTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGG 299
V ++++ G VKP GSS+G+ A + LK A + + D R++VE F++
Sbjct: 229 VMDRIERELGYPCFVKPANMGSSVGINKAKNR-EELKHALEVAAK-FDRRLIVEEFVQ-- 284
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
A L++G VL E+ G V ++ ++Y KY P
Sbjct: 285 ----ARELEIG--------VLGNEELMTSVVGEVIAAKE--FYDYEAKY-KGAGTELSIP 329
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
P V I E A FQ L +R+D ++ + ++
Sbjct: 330 AIVPAHVSEQIAEIAKKAFQALDGSGLSRVDFFWDEKNDKLY----------------IN 373
Query: 420 DINLISGMEQTS---FLFQQASKVGFSHSNILRTIIGHACSR 458
++N + G S LFQ A G S+S ++ ++ A R
Sbjct: 374 EVNTMPGFTPFSMYPMLFQAA---GVSYSELIDRLVQLAIER 412
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 115/451 (25%), Positives = 173/451 (38%), Gaps = 127/451 (28%)
Query: 496 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 555
+I+GG +SE +VSL + ++ + A N EVTP + +D S
Sbjct: 62 IIYGGKSSEHEVSLRTAMSIMQAVDA-NKYEVTPVYV--QLDGS---------------- 102
Query: 556 VWSLPYSLVLRHTTEEVLAACIEAIEPDR-AAFTSHLRNQVVNDLVEGLKKHSWFTGFDI 614
W T E LA + PD+ A + + + E ++ I
Sbjct: 103 -W----------VTGETLAGQL----PDKIEALRLSAKTPAITETTETGQE------LAI 141
Query: 615 ADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 674
A + ++NE + + VF VHG GEDGT+Q LLE +PY G GVMAS
Sbjct: 142 ASKQGSLFAMNEQMDV-------VFPVVHGPFGEDGTIQGLLELANIPYVGTGVMASAVG 194
Query: 675 MDK-----VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
MDK V L + +G+L + +D D+ + +L VK
Sbjct: 195 MDKWMMKTVFAQAGLPQVKYVGLL--RSQWEKGQD-------DVMDRIERELGYPCF-VK 244
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
PA G S G+ + E+L ALE F R LI E F
Sbjct: 245 PANMGSSVGINKAKNREELK---HALEVA------AKFDRR-------------LIVEEF 282
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 849
V+ E+ +GV+G M S++ V + +
Sbjct: 283 VQAR-------------------------ELEIGVLGNEELMTSVVGEVIAAK--EFYDY 315
Query: 850 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 909
E K++ G G L+ P +I+ ++ + + AL G SR+D F + N ++ I
Sbjct: 316 EAKYK-GAGTELSIP--AIVPAHVSEQIAEIAKKAFQALDGSGLSRVDFFWDEKNDKLYI 372
Query: 910 IEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 940
EVNT+PG TP + MYP F
Sbjct: 373 NEVNTMPGFTPFS------------MYPMLF 391
>gi|295090181|emb|CBK76288.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10]
Length = 387
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 121/294 (41%), Gaps = 44/294 (14%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
++D FP +HGR GEDG IQ + E +P VG G + DK D + ++ I VP
Sbjct: 134 HIDAAFPVLHGRNGEDGTIQGLFEMAGIPVVGCGVLSSALCMDK-DRAHKLVHTAGIAVP 192
Query: 223 SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282
S + G + + + + + VKP +AGSS G+T + L A +
Sbjct: 193 SSFVLGKSASVAT-----ALQQAEKIGYPLFVKPVKAGSSFGITKVSSS-NELPAALELA 246
Query: 283 LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD-VREKDAI 341
E D RV+VE + SGF+ +L ++ + G VD +
Sbjct: 247 FE-YDKRVIVE--------------ECISGFEVGCAILGDEDLTV---GEVDEIELSGGF 288
Query: 342 FNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVF 401
FN+ KY + A H P R P I++ A +++ L FAR+D + PS
Sbjct: 289 FNFTEKYT-LKTSAIHVPARIPQNTAEQIKQAAKTIYRTLDCQGFARVDLFLTPS----- 342
Query: 402 SSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
G I+F ++N I G S GF+ I+ +I A
Sbjct: 343 ------------GEIVFNEVNTIPGFTTHSRYPNMMKAAGFTFEQIVSALIEQA 384
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 15/155 (9%)
Query: 600 VEGLKKHSWFTGFDIADEL--PMRHSIN----EWIKLAKENQATVFIAVHGGIGEDGTLQ 653
+E + +W G D + P R S N E K+ K + F +HG GEDGT+Q
Sbjct: 94 IEKIVSDTWCGGKDCTPVVVSPNRTSHNLLLLENGKVKKLHIDAAFPVLHGRNGEDGTIQ 153
Query: 654 SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713
L E G+P G GV++S CMDK + L H A + V + L K+ V
Sbjct: 154 GLFEMAGIPVVGCGVLSSALCMDK-DRAHKLVHTAGIAVPS-------SFVLGKSASVAT 205
Query: 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ K+ L VKP + G S G+ ++ + +L
Sbjct: 206 ALQQAEKIG-YPLFVKPVKAGSSFGITKVSSSNEL 239
Score = 40.8 bits (94), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 840 VKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA 898
++ SG + EK+ T I++ PA I A ++ KQ + I L +GF+R+D
Sbjct: 282 IELSGGFFNFTEKYTLKTSAIHV---PARIPQNTA-EQIKQAAKTIYRTLDCQGFARVDL 337
Query: 899 FVNVDNGEVLIIEVNTVPGMT 919
F+ +GE++ EVNT+PG T
Sbjct: 338 FLT-PSGEIVFNEVNTIPGFT 357
>gi|189219419|ref|YP_001940060.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4]
gi|229485964|sp|B3DVV9.1|DDL_METI4 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|189186277|gb|ACD83462.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4]
Length = 303
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 149/377 (39%), Gaps = 95/377 (25%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+ ++ GGPS ER ISL +A++V D + Y ISS V +
Sbjct: 8 HIAVLKGGPSEEREISLRTAKAVEDALSS--------------LGYEISSIDVTTE---- 49
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
K E + + +I F IHG FGEDG IQ +L + +PF G+ +
Sbjct: 50 ---KFE---------------IPRDAEICFLCIHGSFGEDGQIQRLLMRRGIPFTGSDAS 91
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ +AFDK S + +G I P F + G K P V+KP+R
Sbjct: 92 SSEKAFDK-AWSKTLFIKGGIPTPPFCVVGD-------------GKKIPFDPPYVIKPSR 137
Query: 259 AGSSIGVTVAYGVID---SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ Y + + ++KK+ D VV+ L G E T +LD +
Sbjct: 138 QGSSIGIEFVYDIKELDQAIKKSTQY------DHVVLAEALITGKELTVGILDGKA---- 187
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
LP V+++ K+ ++Y KY Y P + +++++ A
Sbjct: 188 -----LPV---------VEIKPKEGFYDYHHKYTKGAST-YFCPAPLTVDQTSAVQKTAL 232
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F LG + R+D + S + G +IN I GM +TS
Sbjct: 233 DAFNVLGCSVYGRVD--------IILSDN---------GIPWVLEINTIPGMTETSLFPM 275
Query: 436 QASKVGFSHSNILRTII 452
A G + + + I+
Sbjct: 276 AAKASGMNFAQLCEKIL 292
Score = 46.6 bits (109), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 819 EITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
E+TVG++ GK +P V +K K+ G P P ++ T A+
Sbjct: 177 ELTVGILDGKA------LPVVEIKPKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAV--- 227
Query: 878 KQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 936
Q+ L A N L + R+D ++ DNG ++E+NT+PGMT +++ A + M
Sbjct: 228 -QKTALDAFNVLGCSVYGRVDIILS-DNGIPWVLEINTIPGMTETSLFPMAAKASG--MN 283
Query: 937 PHQFFRKVLDLGSERF 952
Q K+L++ R+
Sbjct: 284 FAQLCEKILEISYLRW 299
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 677
F+ +HG GEDG +Q LL G+P+TG +S+ DK
Sbjct: 61 FLCIHGSFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDK 99
>gi|253699160|ref|YP_003020349.1| D-alanine--D-alanine ligase [Geobacter sp. M21]
gi|259645167|sp|C6DZK9.1|DDL_GEOSM RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|251774010|gb|ACT16591.1| D-alanine/D-alanine ligase [Geobacter sp. M21]
Length = 305
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 156/381 (40%), Gaps = 93/381 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SLNS ++VL LVR + A I V + P
Sbjct: 10 KIAVLMGGLSAEREVSLNSGKAVLAS------LVR-----QGFQAVGID---VGRDLP-- 53
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
AE A ++ F +HGRFGEDG +Q +LE +P+ G+G
Sbjct: 54 ---------------QRLAEEKA---EVAFIALHGRFGEDGSVQGLLELMGIPYTGSGVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK + + + G P +L+ E E +L+N VVVKP+R
Sbjct: 96 ASALAIDKIASKVIFASAGLTLAPYQVLRRGE--EFKLANPL----------PVVVKPSR 143
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+GV G++ + + + E D +++E F++ G E +LD G
Sbjct: 144 EGSSVGV----GIVRDPSRMQAALDEAFRYDSEILIEGFID-GREVQVGILD-GKAL--- 194
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSIREGAS 375
G++++ K ++Y KY T A H P R P V +
Sbjct: 195 --------------GAIEIVPKGEFYDYEAKY--TDGGAQHILPARLPEAVYGEVLRQGE 238
Query: 376 LLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
LG CD ++R+D FL TE G ++N + GM S L
Sbjct: 239 KAHAALG-CDCYSRVD--FL---------------VTETGDCFLLEVNTLPGMTDLSLLP 280
Query: 435 QQASKVGFSHSNILRTIIGHA 455
+ A G + ++ I+ A
Sbjct: 281 EIAGGAGITFGELVLRILQAA 301
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 138/318 (43%), Gaps = 85/318 (26%)
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
G D+ +LP R LA+E FIA+HG GEDG++Q LLE G+PYTG GV+
Sbjct: 44 VGIDVGRDLPQR--------LAEEKAEVAFIALHGRFGEDGSVQGLLELMGIPYTGSGVL 95
Query: 670 ASKTCMDKVATSLALNHLADLGV-LTINKDVRRKEDL-LKTPIVDIWHELTSKLQCKTLC 727
AS +DK+A+ + A G+ L + +RR E+ L P+ +
Sbjct: 96 ASALAIDKIASKVI---FASAGLTLAPYQVLRRGEEFKLANPL--------------PVV 138
Query: 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 787
VKP+R+G S GV ++R P SR ++ E
Sbjct: 139 VKPSREGSSVGVG------------------IVRDP----SRMQAALD-----------E 165
Query: 788 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDI 846
F EIL +G E+ VG++ GK + ++ + G+
Sbjct: 166 AFRYDSEILI--------------EGFIDGREVQVGILDGKA------LGAIEIVPKGEF 205
Query: 847 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 906
E K+ G ++ P + + + ++ E AL + +SR+D F+ + G+
Sbjct: 206 YDYEAKYTDGGAQHILP---ARLPEAVYGEVLRQGEKAHAALGCDCYSRVD-FLVTETGD 261
Query: 907 VLIIEVNTVPGMTPSTVL 924
++EVNT+PGMT ++L
Sbjct: 262 CFLLEVNTLPGMTDLSLL 279
>gi|383815714|ref|ZP_09971123.1| D-alanine--D-alanine ligase [Serratia sp. M24T3]
gi|383295441|gb|EIC83766.1| D-alanine--D-alanine ligase [Serratia sp. M24T3]
Length = 365
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 155/387 (40%), Gaps = 55/387 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG S+E +SL SAR+++D + V ID+ + I+ A Y +
Sbjct: 4 LRVGIIFGGKSSEHEVSLQSARNIVDALDQQRFDVTLLGIDKQ-GEWHINDASNYLLNAE 62
Query: 135 TPADFDFKLE----SLAQGFGS---LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA +L G + H + +D++FP +HG GEDG +Q +L
Sbjct: 63 DPALIALNRSNQQVALVPGLEKNQLIDTQDAHAMSQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+P+VG+G DK D + + + + V F+ ++ V P
Sbjct: 123 ANIPYVGSGVLGSAVCMDK-DVTKRLLRDAGLNVAPFVTLTRRTRAQTSFDYVVEQLGLP 181
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ +KP GSS+GV+ DS ++A D +V+VE ++ G E VL
Sbjct: 182 ----LFIKPANQGSSVGVSKVKSR-DSYEQALDSAF-SYDHKVLVESAIK-GREIECAVL 234
Query: 308 --DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
D C V+L D ++Y KY+ Q + P
Sbjct: 235 GNDFPKASTCGEVIL-----------------HDEFYSYDTKYINEQGASVAIPANIAAE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ + IR A +Q L AR+D + TE G ++ +IN +
Sbjct: 278 INDKIRAIAIQAYQALECRGMARVDIFL-----------------TEEGEVVINEINTLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTII 452
G S + + G ++ ++ +I
Sbjct: 321 GFTNISMYPKLWAASGLDYTALITELI 347
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 102/438 (23%), Positives = 168/438 (38%), Gaps = 132/438 (30%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG +SE +VSL S N+ + A + LL ID N D+S+
Sbjct: 6 VGIIFGGKSSEHEVSLQSARNI---VDALDQQRFDVTLLG--IDKQGEWHIN----DASN 56
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
++ + +L+ + + + +A LV GL+K+ D
Sbjct: 57 YLLNAEDPALIALNRSNQQVA------------------------LVPGLEKNQLIDTQD 92
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
H++++ +F VHG +GEDG+LQ LL +PY G GV+ S
Sbjct: 93 -------AHAMSQL--------DVIFPIVHGTLGEDGSLQGLLRMANIPYVGSGVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 725
CMDK + K + R L P V LT + + +T
Sbjct: 138 CMDK----------------DVTKRLLRDAGLNVAPFV----TLTRRTRAQTSFDYVVEQ 177
Query: 726 ----LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 781
L +KPA G S GV+++ + Y +AL+ ++FS H
Sbjct: 178 LGLPLFIKPANQGSSVGVSKVKSRDS---YEQALD--------SAFSYDH---------- 216
Query: 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 841
+++ + + EI V+G S V +
Sbjct: 217 --------------------------KVLVESAIKGREIECAVLGNDFPKASTCGEVILH 250
Query: 842 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN 901
+ + S + K+ G ++ P ++ E DK + AL+ G +R+D F+
Sbjct: 251 D--EFYSYDTKYINEQGASVAIPAN--IAAEINDKIRAIAIQAYQALECRGMARVDIFL- 305
Query: 902 VDNGEVLIIEVNTVPGMT 919
+ GEV+I E+NT+PG T
Sbjct: 306 TEEGEVVINEINTLPGFT 323
>gi|386309580|ref|YP_006005636.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418241388|ref|ZP_12867917.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433550656|ref|ZP_20506700.1| D-alanine--D-alanine ligase [Yersinia enterocolitica IP 10393]
gi|318604546|emb|CBY26044.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|351779189|gb|EHB21307.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431789791|emb|CCO69740.1| D-alanine--D-alanine ligase [Yersinia enterocolitica IP 10393]
Length = 366
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 150/345 (43%), Gaps = 36/345 (10%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + ++ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GKWHVNDASNYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLA-------ANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + +A A +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+G + DK D + + + + + F+ + N+ VT KL
Sbjct: 123 ANIPFVGSGVLGSAVSMDK-DITKRLLRDAGLNIAPFITL-TRANKDNYRFEQVTAKLGL 180
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ +KP GSS+GV+ V ++ + + + L D +V+VE +AI
Sbjct: 181 ---PLFIKPANQGSSVGVS---KVRNAYEYEQAVALAFDFDHKVLVE---------SAI- 224
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
VG +C V+ + G V + D ++Y KY+ P V
Sbjct: 225 --VGREIEC--AVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVIIPASIGSAV 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
++IR A F+ L AR+D + P + + + T G T
Sbjct: 279 SDNIRAVALAAFRALECRGMARVDVFLTPDNRVIINEINTLPGFT 323
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 122/288 (42%), Gaps = 72/288 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 693
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L ++A L
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITL 161
Query: 694 T-INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
T NKD R + ++T+KL L +KPA G S GV+++ A + Y
Sbjct: 162 TRANKDNYR------------FEQVTAKLGL-PLFIKPANQGSSVGVSKVRNAYE---YE 205
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+A+ +F H ++L S +
Sbjct: 206 QAVAL--------AFDFDH----------------------KVLVESAIVGR-------- 227
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI V+G SL V + S + S + K+ TG + PASI S
Sbjct: 228 ------EIECAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVI-IPASIGS-- 276
Query: 873 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
A+ + + L A AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 277 AVSDNIRAVALAAFRALECRGMARVDVFLTPDN-RVIINEINTLPGFT 323
>gi|229918692|ref|YP_002887338.1| D-alanine--D-alanine ligase [Exiguobacterium sp. AT1b]
gi|229470121|gb|ACQ71893.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b]
Length = 308
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 157/388 (40%), Gaps = 90/388 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++V ++ GG S ER +SL S + +++ + +R AI
Sbjct: 1 MKVAVLYGGVSGEREVSLTSGQGMIEALT-----------ERGHEVTAI----------- 38
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DF E E L +VD+V +HG++GEDG +Q +LE +P+ G+G
Sbjct: 39 --DFHPERAN----------ELLTLDVDVVVSALHGKYGEDGRVQSLLEMAGIPYTGSGV 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A A DK A + + G L++ E +++++ W + VVKP
Sbjct: 87 LASALAMDKARAKIIFAASGIRVARDVLIESRESIDAKVAEWGMEF-------PCVVKPA 139
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI------DDRVVVELFLEGGSEFTAIVLDVGS 311
+ GSS G+T+A + ++ EGI D V+VE +++ G E T V+
Sbjct: 140 QEGSSNGLTIAMD--------EAMLREGIEKAFACDSAVLVEQYIK-GKELTVPVIGNFG 190
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSI 370
+ PV +++ K+ ++Y KY T+ + H P + + +
Sbjct: 191 KEEALPV--------------IEIIPKNEFYDYESKY--TEGGSIHVCPAEISDDLTSEV 234
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
++ A L + LG ++R D FL S E G + N + GM
Sbjct: 235 QQAAVLAHRALGCSGYSRSD--FLVS---------------EEGKAYILETNTLPGMTPL 277
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S A VG S+ +L I A R
Sbjct: 278 SLFPDSAKTVGISYGELLERFIELALER 305
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 122/287 (42%), Gaps = 68/287 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
V A+HG GEDG +QSLLE G+PYTG GV+AS MDK A ++
Sbjct: 55 VVVSALHGKYGEDGRVQSLLEMAGIPYTGSGVLASALAMDK----------ARAKIIFAA 104
Query: 697 KDVRRKEDLL---KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
+R D+L + I E + C VKPA++G S G LT+
Sbjct: 105 SGIRVARDVLIESRESIDAKVAEWGMEFPC---VVKPAQEGSSNG---------LTI--- 149
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
A++E +LR E E F+ S ++ +
Sbjct: 150 AMDEAMLR-----------------------------EGIEKAFACDSA------VLVEQ 174
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
+ E+TV VIG G +L P + + + E K+ G I++ P +S +
Sbjct: 175 YIKGKELTVPVIGNFGKEEAL-PVIEIIPKNEFYDYESKYTEGGSIHVCPAE---ISDDL 230
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
+ +Q L AL G+SR D V+ + G+ I+E NT+PGMTP
Sbjct: 231 TSEVQQAAVLAHRALGCSGYSRSDFLVS-EEGKAYILETNTLPGMTP 276
>gi|259500836|ref|ZP_05743738.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335]
gi|259167530|gb|EEW52025.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335]
Length = 366
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 170/400 (42%), Gaps = 53/400 (13%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
M + + + +RVGLI GG S+E +S+ S R++ I + V +I N ++
Sbjct: 1 MIRRSVMNKKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWI---TNTGFLA 57
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLE 186
S D +++E+ ++S E +D+ FP +HG GEDG +Q +L
Sbjct: 58 SDADSRKVLEDPSYQIEN-PHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLR 116
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFV 241
+ PFVG A DK + + G +I++ F + ++ +LS +V
Sbjct: 117 ILDKPFVGDDVLAAAITMDKELNKIMAQRAGVPVADWISIKRF--EYNDAKNEKLSYDYV 174
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGG 299
+ KL + + VKP+ GSS+G++ + S K + E DD+V+VE ++G
Sbjct: 175 SQKLGTD---LFVKPSNQGSSVGIS----HVTSASDYKAALAEAFKYDDKVLVEETIKGT 227
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
TA++ G D ++ QGS ++Y KY P
Sbjct: 228 EVETAVL-----GND--DAIVSGVGQITNAQGS--------WYSYENKYNDNSTSKLQIP 272
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
P +I ++R A ++ AR+D SS+ K ++F
Sbjct: 273 AALPSEIIETVRRQALKVYHATECSGLARVDSML---------SSDNK--------VIFN 315
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G S + +VG S++ ++ ++ +A R+
Sbjct: 316 ELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYALDRY 355
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 66/319 (20%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LAD-LGVL 693
F VHG +GEDG LQ LL P+ G V+A+ MDK + +AD + +
Sbjct: 98 FPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAITMDKELNKIMAQRAGVPVADWISIK 157
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
+ + E L ++ S+ L VKP+ G S G++ + A D Y
Sbjct: 158 RFEYNDAKNEKLS--------YDYVSQKLGTDLFVKPSNQGSSVGISHVTSASD---YKA 206
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E K D+++ +
Sbjct: 207 ALAEAF--------------------------------------------KYDDKVLVEE 222
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
+ E+ V+G ++ S + +T G S E K+ + L P A + +E
Sbjct: 223 TIKGTEVETAVLGNDDAIVSGVGQIT-NAQGSWYSYENKYNDNSTSKLQIPAA--LPSEI 279
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
++ +++ + +A + G +R+D+ ++ DN +V+ E+N++PG T + ++ L EQ
Sbjct: 280 IETVRRQALKVYHATECSGLARVDSMLSSDN-KVIFNELNSLPGFT--NISMYPKLFEQV 336
Query: 934 PMYPHQFFRKVLDLGSERF 952
+ + K+L+ +R+
Sbjct: 337 GISYTELITKLLNYALDRY 355
>gi|395798410|ref|ZP_10477695.1| D-alanyl-alanine synthetase A [Pseudomonas sp. Ag1]
gi|395337599|gb|EJF69455.1| D-alanyl-alanine synthetase A [Pseudomonas sp. Ag1]
Length = 364
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 163/393 (41%), Gaps = 55/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
LRVG+I GG SAE +SL SAR+++D + ID+ + + ++ N
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPILIGIDKAGHWHLNDTSGFLLNEEN 63
Query: 136 PADFDFKLES--LAQGFGSLSEFAEHLAA-----NVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA + LA G S+ A+ +VD++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNQSNRELAVVPGKASQQLVETASQASLEHVDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK D S + + I V F+ +N +
Sbjct: 124 DLPFVGSDVLGSAVC---MDK-DISKRLLRDAGIAVTPFI----TLNRRTAARTTFEQAR 175
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ G A + L G D++V+VE ++ G E
Sbjct: 176 QKLGVPMFVKPANQGSSVGVS-KVGSEAEYHAAVELAL-GFDEKVLVESAVK-GREIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL + +P+ G ++ +D ++Y KY+ Q P +
Sbjct: 233 VLG-----NENPIA----------SGCGEIVVRDGFYSYDSKYIDDQAAQVVVPADISVE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
IR A F+ LG AR+D + T+ G +L +IN +
Sbjct: 278 ASERIRALAIEAFETLGCAGLARVDVFL-----------------TDEGEVLINEINSLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G S+S ++ +I A R
Sbjct: 321 GFTRISMYPKLWQAAGMSYSELVSRLIELALER 353
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 107/463 (23%), Positives = 176/463 (38%), Gaps = 120/463 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRSRFEPILIG--IDKAGHWHLNDT---SGF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A+ LVE + S
Sbjct: 58 LLNEENPALIALNQSNREL------AVVPGKAS----------QQLVETASQASL----- 96
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
E+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 97 -------------------EHVDVIFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGV-----LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728
CMDK ++ L D G+ +T+N+ +T + + KL + V
Sbjct: 138 CMDK---DISKRLLRDAGIAVTPFITLNR---------RTAARTTFEQARQKLGV-PMFV 184
Query: 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788
KPA G S GV+++ S + H +E+ E ++ E
Sbjct: 185 KPANQGSSVGVSKV----------------------GSEAEYHAAVELALGFDEKVLVES 222
Query: 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 848
V KG EI V+G + S + V++ S
Sbjct: 223 AV---------------------KGR----EIECAVLGNENPIASGCGEIVVRDG--FYS 255
Query: 849 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
+ K+ + P + +S EA ++ + L G +R+D F+ D GEVL
Sbjct: 256 YDSKYIDDQAAQVVVP--ADISVEASERIRALAIEAFETLGCAGLARVDVFLT-DEGEVL 312
Query: 909 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
I E+N++PG T + ++ L + M + ++++L ER
Sbjct: 313 INEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIELALER 353
>gi|383808734|ref|ZP_09964270.1| D-ala D-ala ligase N-terminal domain protein [Rothia aeria F0474]
gi|383448479|gb|EID51440.1| D-ala D-ala ligase N-terminal domain protein [Rothia aeria F0474]
Length = 370
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 150/349 (42%), Gaps = 33/349 (9%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP- 136
+ V L+CGG S+E ISL +A VL I V I ++ Y ++ ++ T
Sbjct: 5 ITVALLCGGRSSEHSISLITAVGVLGAIDTAKYEVVPVGITKDGRWYLTNAQELEKLTAG 64
Query: 137 ---ADFDFKLESLAQGFGS------LSEFAEHL--AANVDIVFPTIHGRFGEDGGIQEVL 185
A+F + + G+ L + A HL +++VFP +HG FGEDG +Q +L
Sbjct: 65 SDMAEFTDGAQQVFLPLGAGDSRLHLVDSAGHLEFGPAINVVFPLLHGPFGEDGTVQGLL 124
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
E N+P+VG G A DK+ + + G P ++ + +L
Sbjct: 125 EMANLPYVGCGVTASAVGMDKHFMKVAFADAGLEVGPYEVVTDRQWRHDRDGALERVARL 184
Query: 246 DPNSGKVVVKPTRAGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
+ VKP RAGSS G+T A ++ ++++A+ D +VV+E + G E
Sbjct: 185 ---GYPMFVKPARAGSSFGITKVDTAEQLVSAIEQAR-----VYDPKVVIEAGIV-GREI 235
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
+LD +G P P E+E+Q E+ +++ KY+ P
Sbjct: 236 ECGILDGHNG--DMPRASYPGEIEMQ-------GEQGGFYDFEAKYVSKTTAVTRCPANL 286
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
P + +R+ A F L +R D ++ P + + + T G T
Sbjct: 287 PPEDLERMRQLAVKAFLALDGEGISRADFFYTPDARLIVNEVNTMPGFT 335
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 131/315 (41%), Gaps = 56/315 (17%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTIN 696
VF +HG GEDGT+Q LLE +PY G GV AS MDK +A ++G +
Sbjct: 106 VFPLLHGPFGEDGTVQGLLEMANLPYVGCGVTASAVGMDKHFMKVAFADAGLEVGPYEVV 165
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
D + + D D E ++L + VKPAR G S G+ ++ AE L V A+E
Sbjct: 166 TDRQWRHDR------DGALERVARLGYP-MFVKPARAGSSFGITKVDTAEQL---VSAIE 215
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ +R + P+++I V + N + R + G
Sbjct: 216 Q----------ARVY--------DPKVVIEAGIVGREIECGILDGHNGDMPRASYPGE-- 255
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
+E+ E G E K+ T +T PA+ + E L++
Sbjct: 256 -IEMQ-------------------GEQGGFYDFEAKYVSKT-TAVTRCPAN-LPPEDLER 293
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 936
+Q AL EG SR D F D +++ EVNT+PG TP + +++ + E +
Sbjct: 294 MRQLAVKAFLALDGEGISRADFFYTPD-ARLIVNEVNTMPGFTP--ISMYKTMWENTGIE 350
Query: 937 PHQFFRKVLDLGSER 951
++L L ER
Sbjct: 351 YKDLIDELLMLALER 365
>gi|255306638|ref|ZP_05350809.1| putative D-alanine:D-alanine ligase (putative
vancomycin/teicoplanin A-type resistance protein)
[Clostridium difficile ATCC 43255]
Length = 366
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 171/404 (42%), Gaps = 77/404 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI--SSAQVYSNTP 136
++ +I GG S E +SL SA +VL+++ + + I R N Y + +NT
Sbjct: 5 KIAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNWYHYIGDYNNIQNNTW 64
Query: 137 ADFDFKL--------------------ESLAQGF--GSLSEFAEH--LAANVDIVFPTIH 172
+ D + ++++Q S E E+ +D VFP +H
Sbjct: 65 FERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPILH 124
Query: 173 GRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSE- 230
G+ GEDG +Q + E + +G G+ + DK D S ++ I VP S LL+ S+
Sbjct: 125 GKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDK-DKSHKLVHSEGIKVPKSILLKYSDK 183
Query: 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRV 290
N +ELS + + +KP RAGSS G++ Y KK + +V
Sbjct: 184 FNVAELSKDL--------TYPLFIKPVRAGSSFGISKIY------KKE--------ELQV 221
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY- 348
V+L E +E I+ + GF+ VL ++ G VD + F+Y KY
Sbjct: 222 AVDLAFEHDNE--VIIEENIDGFEVGCAVLGNDDL---LVGRVDEIELSKGFFDYTEKYT 276
Query: 349 LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKY 408
L + ++ H P R + I+E A ++++ LG FAR+D + PS
Sbjct: 277 LKSSKI--HMPARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS------------ 322
Query: 409 GSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
G I+F ++N I G S +G S IL II
Sbjct: 323 -----GEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKII 361
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 105/263 (39%), Gaps = 45/263 (17%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSS--GMDANITDP 549
+++ VIFGG+++E VSL S V NL ++ P + + G NI +
Sbjct: 4 KKIAVIFGGNSTEYDVSLQSAFAVLENLNT-EKYDILPIGITREGNWYHYIGDYNNIQNN 62
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
R +P + + V IE + PD + +N + N +E + +
Sbjct: 63 TWFERDTDIIPVIV----SQNRVKNGIIEFLIPDAVS-----QNHIPNSAIESCENDIKY 113
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
T D VF +HG GEDGT+Q L E G+ G G +
Sbjct: 114 TKLDF-----------------------VFPILHGKNGEDGTVQGLFELAGIQVIGCGTL 150
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
+S CMDK S L H + V K LLK EL+ L L +K
Sbjct: 151 SSALCMDK-DKSHKLVHSEGIKV--------PKSILLKYSDKFNVAELSKDL-TYPLFIK 200
Query: 730 PARDGCSTGVARLCCAEDLTVYV 752
P R G S G++++ E+L V V
Sbjct: 201 PVRAGSSFGISKIYKKEELQVAV 223
>gi|392409854|ref|YP_006446461.1| D-alanine--D-alanine ligase [Desulfomonile tiedjei DSM 6799]
gi|390622990|gb|AFM24197.1| D-alanine--D-alanine ligase [Desulfomonile tiedjei DSM 6799]
Length = 367
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 157/388 (40%), Gaps = 47/388 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LR+ L+ GG SAE +SL SARS+ D + I + + Y++ + S
Sbjct: 6 LRIALVYGGQSAEHEVSLRSARSIFDAMDRSKYDPLPILITQQGSWYSMPAEAASFDPSV 65
Query: 135 TPADFD---FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
+PA + F + +GF + + +VD+VFP +HG +GEDG IQ +LE ++P
Sbjct: 66 SPARSNRLIFSPDPQHRGFLKVDGESGIQPMHVDLVFPVLHGTYGEDGTIQGLLEMAHMP 125
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
+VG G A DK + G P F +E ES+ +T KL
Sbjct: 126 YVGCGVLASAVGMDKILMKKAFRENGLNIGPYFWFFRAEW-ESDPDK--ITAKLKSAHFP 182
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR-VVVELFLEGGSEFTAIVLDVG 310
+ VKP GSS+G++ V D + L DR ++VE +EG L+V
Sbjct: 183 LFVKPANLGSSVGIS---KVSDPSGFEAAVNLAASYDRKILVEDGIEGRE------LEVS 233
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
+ HP + E V + ++Y KYL P P ++
Sbjct: 234 VLGNDHPKASVAGE----------VISHSSFYDYEEKYL-KDTAELVIPAELPAGMLQKA 282
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A F+ + R+D + P + ++ +IN + G
Sbjct: 283 QEAAITAFRAVDGSGLGRVDMFLTPDN-----------------QVVVNEINTLPGFTSI 325
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G ++ ++ ++G A R
Sbjct: 326 SMYPKLWEATGLPYAQLVDRLVGLAQER 353
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTIN 696
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ A ++G
Sbjct: 101 VFPVLHGTYGEDGTIQGLLEMAHMPYVGCGVLASAVGMDKILMKKAFRENGLNIGPYFWF 160
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCK--TLCVKPARDGCSTGVARLC 743
+ D K +T+KL+ L VKPA G S G++++
Sbjct: 161 FRAEWESDPDK---------ITAKLKSAHFPLFVKPANLGSSVGISKVS 200
>gi|398863550|ref|ZP_10619111.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM78]
gi|398247450|gb|EJN32896.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM78]
Length = 364
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 162/406 (39%), Gaps = 81/406 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I GG SAE +SL SA++++D + ID+ + N P+
Sbjct: 4 LRVGVIFGGRSAEHEVSLQSAKNIVDALDRSRFEPVLIGIDKQ--------GHWHLNDPS 55
Query: 138 DFDFKLESLA----------------QGFGSLSEFA-EHLAANVDIVFPTIHGRFGEDGG 180
+F E+ A + L E A L +VD++FP +HG GEDG
Sbjct: 56 NFLLNQENPALIALNQSNRELAVVPGKARQQLVETAGPELLGHVDVIFPIVHGTLGEDGC 115
Query: 181 IQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
+Q +L ++PFVG+ GS C DK + + G P L + + +
Sbjct: 116 LQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFVTLTRASAARTGFA 172
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFL 296
V KL + VKP GSS+GV+ V D + A + L D++V++E +
Sbjct: 173 E--VCGKLGL---PLFVKPANQGSSVGVS---KVADEAEYAAAVELALSFDEKVLIESAV 224
Query: 297 EGGSEFTAIVLD----VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
+ G E VL + SG C +V+ ++Y KY+ +
Sbjct: 225 K-GREIECAVLGNEDAIASG--CGEIVV-----------------HSGFYSYDSKYIDDK 264
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
P + IR A FQ LG AR+D + TE
Sbjct: 265 AAEVVVPANISVEASERIRAMAVEAFQVLGCSGLARVDVFL-----------------TE 307
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G + S + G ++S ++ +I A ++
Sbjct: 308 SGEVLINEINSLPGFTRISMYPKLWQAAGMTYSELVTRLIDLALAK 353
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 110/467 (23%), Positives = 176/467 (37%), Gaps = 134/467 (28%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V VIFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGVIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P +A R Q+V L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKA------RQQLVETAGPELLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC-- 727
S CMDK I+K + R L TP V + ++ +C
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRASAARTGFAEVCGK 177
Query: 728 ------VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 781
VKPA G S GV+++ D Y A+E L SF
Sbjct: 178 LGLPLFVKPANQGSSVGVSKVA---DEAEYAAAVELAL------SFD------------- 215
Query: 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 841
+++L S + EI V+G ++ S + V
Sbjct: 216 -----------EKVLIESAVKGR--------------EIECAVLGNEDAIASGCGEIVV- 249
Query: 842 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN 901
SG S + K+ + P + +S EA ++ + L G +R+D F+
Sbjct: 250 HSG-FYSYDSKYIDDKAAEVVVP--ANISVEASERIRAMAVEAFQVLGCSGLARVDVFLT 306
Query: 902 VDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948
++GEVLI E+N++PG T + ++ L + M + +++DL
Sbjct: 307 -ESGEVLINEINSLPGFT--RISMYPKLWQAAGMTYSELVTRLIDLA 350
>gi|392962720|ref|ZP_10328149.1| D-alanine--D-alanine ligase [Pelosinus fermentans DSM 17108]
gi|421053216|ref|ZP_15516198.1| D-alanine/D-alanine ligase [Pelosinus fermentans B4]
gi|421060272|ref|ZP_15522774.1| D-alanine--D-alanine ligase [Pelosinus fermentans B3]
gi|421073798|ref|ZP_15534847.1| D-alanine--D-alanine ligase [Pelosinus fermentans A11]
gi|392442257|gb|EIW19847.1| D-alanine/D-alanine ligase [Pelosinus fermentans B4]
gi|392443787|gb|EIW21296.1| D-alanine--D-alanine ligase [Pelosinus fermentans A11]
gi|392451961|gb|EIW28930.1| D-alanine--D-alanine ligase [Pelosinus fermentans DSM 17108]
gi|392457450|gb|EIW34111.1| D-alanine--D-alanine ligase [Pelosinus fermentans B3]
Length = 364
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 157/393 (39%), Gaps = 55/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
+ V L+ GG S E +SL SA++++ I + + ID+ + N +
Sbjct: 4 INVALLFGGKSTEHEVSLQSAKNIIHAIDKEKYELTLIGIDKRGQWFLCDQEDFLINEDS 63
Query: 136 PADFDFKLESLAQGFGSLSE------FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
P D K + +A F E FAE ++D+VFP +HG +GEDG +Q +L
Sbjct: 64 PKDIMLKHKGVAAAFQMSKESEQLICFAEKTFTKSIDVVFPILHGTYGEDGTVQGLLTLA 123
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+PFVG S DK A + G S Q E + V +L
Sbjct: 124 NIPFVGPSSLGSGIGMDKEVAKRLLRDAGIPVAKSLTYQHWEQPGIDFET--VVEQL--- 178
Query: 249 SGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
V VKP GSS+G++ + ++K+A D ++++E +E G E
Sbjct: 179 GLPVFVKPASLGSSVGISKVKQQDELFAAIKEAF-----AFDHKIIIEECIE-GQEIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
+L + ++P + ++Y KY+ Q A P P
Sbjct: 233 ILGNENPIASAVGAIIP---------------RQEFYSYAAKYIDDQGAAVQIPADIPKE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ ++E A FQ L AR+D +FL T+ +L +IN I
Sbjct: 278 IAALVQELAIKAFQVLCCEGMARVD-FFL----------------TKEHNVLINEINTIP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G S+++++ +I A R
Sbjct: 321 GFTKISMYPKLWGISGISYTDLIDRLIQLALER 353
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 113/286 (39%), Gaps = 66/286 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LL +P+ GP + S MDK +A L D G+ +
Sbjct: 101 VVFPILHGTYGEDGTVQGLLTLANIPFVGPSSLGSGIGMDK---EVAKRLLRDAGI-PVA 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
K + + + P +D + + +L VKPA G S G++++ ++L +K
Sbjct: 157 KSLTYQH--WEQPGID-FETVVEQLGLPVF-VKPASLGSSVGISKVKQQDELFAAIK--- 209
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+F+ H +I E +E EI GN
Sbjct: 210 --------EAFAFDHK-----------IIIEECIEGQEI------------ECAILGNEN 238
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
+ VG I +P + S K+ G + P AL +
Sbjct: 239 PIASAVGAI---------IP------RQEFYSYAAKYIDDQGAAVQIPADIPKEIAALVQ 283
Query: 877 CKQRIELIANALQL---EGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
EL A Q+ EG +R+D F+ ++ VLI E+NT+PG T
Sbjct: 284 -----ELAIKAFQVLCCEGMARVDFFLTKEHN-VLINEINTIPGFT 323
>gi|375109684|ref|ZP_09755926.1| D-alanine--D-alanine ligase [Alishewanella jeotgali KCTC 22429]
gi|374570206|gb|EHR41347.1| D-alanine--D-alanine ligase [Alishewanella jeotgali KCTC 22429]
Length = 303
Score = 87.4 bits (215), Expect = 4e-14, Method: Composition-based stats.
Identities = 90/377 (23%), Positives = 151/377 (40%), Gaps = 84/377 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S ++VL +Q D ++A+A
Sbjct: 6 KVAVMFGGRSAEREVSLRSGKAVLSALQ-----------DAGIDAFA------------- 41
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD K + L+ + D VF +HGR GEDG +Q L++ +P+ G+G
Sbjct: 42 FDPKEQPLS-------------SLQADQVFIVLHGRGGEDGTMQGALQQLGLPYTGSGVL 88
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK QG T P +++ + + + + L GKV+VKP
Sbjct: 89 GSALAMDKIRCKWLFQAQGLPTAPFLVVRPDDTDYAAM--------LQQLGGKVMVKPAN 140
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIG++ A + A D V+VE +++G EFT +L+
Sbjct: 141 EGSSIGMSAASNA--AELAAAIATAHQYDQEVLVERWIDG-REFTIAILNEQ-------- 189
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+LP V++R A ++Y KY Y P + ++++ A F
Sbjct: 190 -VLPI---------VEMRTPRAFYDYEAKY-QANSTEYLCPAPLTAELTAAMQQSALAAF 238
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ +G + R+D + H ++N + GM + S + A
Sbjct: 239 KAVGASGWGRVDLMLDQAGQH-----------------YLLEVNTVPGMTEKSLVPMAAK 281
Query: 439 KVGFSHSNILRTIIGHA 455
G+S ++ I+ A
Sbjct: 282 AAGYSFQQLVLAILQQA 298
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFI +HG GEDGT+Q L+ G+PYTG GV+ S MDK+ G+ T
Sbjct: 57 VFIVLHGRGGEDGTMQGALQQLGLPYTGSGVLGSALAMDKIRCKWLFQA---QGLPTAPF 113
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
V R +D T + +L K+ VKPA +G S G++
Sbjct: 114 LVVRPDD---TDYAAMLQQLGGKVM-----VKPANEGSSIGMS 148
Score = 42.4 bits (98), Expect = 1.4, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 816 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
RW+ E T+ ++ + ++P V ++ E K+Q + L P P + T
Sbjct: 174 RWIDGREFTIAILNE-----QVLPIVEMRTPRAFYDYEAKYQANSTEYLCPAPLTAELTA 228
Query: 873 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
A+ Q+ L A A+ G+ R+D ++ G+ ++EVNTVPGMT +++
Sbjct: 229 AM----QQSALAAFKAVGASGWGRVDLMLD-QAGQHYLLEVNTVPGMTEKSLV 276
>gi|397167084|ref|ZP_10490527.1| D-alanine--D-alanine ligase A [Enterobacter radicincitans DSM
16656]
gi|396091230|gb|EJI88797.1| D-alanine--D-alanine ligase A [Enterobacter radicincitans DSM
16656]
Length = 366
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 166/394 (42%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D + V ID+ + IS A Y ++
Sbjct: 4 LRVGVVFGGKSAEHEVSLQSAKNIVDAMDKSRFEVVLLGIDKQ-GQWHISDANNYLLNAS 62
Query: 135 TPADFDFK--LESLAQGFGSLSEF---AEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEK 187
PA S+A G+ ++ A++ A +VD++FP +HG GEDG +Q +L
Sbjct: 63 DPARIALNPSQNSVALVPGNTAQQLIQAQNSAPLPDVDVIFPIVHGTLGEDGTLQGMLRL 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+ A DK + G P L + N +++ V +L
Sbjct: 123 ANLPFVGSDVLASAACMDKDVTKRLLRDAGLAVAPFITL--TRANRQQIAFSDVEAQL-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ V + + + L D +V+VE ++ G E V
Sbjct: 179 -GLPLFVKPANQGSSVGVS---KVTSEAQYHEAVRLAFEFDKKVIVEKGIK-GREIECAV 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C +VL + Y KY+ P
Sbjct: 234 LGNDDPQASTCGEIVL-----------------HSEFYAYDTKYIDENGAQVVVPADIAP 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ + IR+ A +Q LG AR+D + P + V + T G FT+I++
Sbjct: 277 EINDKIRQIAVQAYQTLGCEGMARVDVFLTPDNEVVINEINTLPG--------FTNISMY 328
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ Q S G S+ +++ +I A +R
Sbjct: 329 PKLWQAS---------GISYPDLITRLIELAIAR 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 115/285 (40%), Gaps = 64/285 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDGTLQ +L +P+ G V+AS CMDK T L LA +T
Sbjct: 101 VIFPIVHGTLGEDGTLQGMLRLANLPFVGSDVLASAACMDKDVTKRLLRDAGLAVAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R+ + D+ +L L VKPA G S GV+++
Sbjct: 161 LTRANRQ-----QIAFSDVEAQLG-----LPLFVKPANQGSSVGVSKVT----------- 199
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
S ++ H + + + +I E ++ EI GN
Sbjct: 200 -----------SEAQYHEAVRLAFEFDKKVIVEKGIKGREI------------ECAVLGN 236
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
T G I +HS + + + K+ G + P + ++ E
Sbjct: 237 DDPQASTCGEI----VLHS-----------EFYAYDTKYIDENGAQVVVP--ADIAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK +Q L EG +R+D F+ DN EV+I E+NT+PG T
Sbjct: 280 DKIRQIAVQAYQTLGCEGMARVDVFLTPDN-EVVINEINTLPGFT 323
>gi|401684476|ref|ZP_10816355.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus sp.
BS35b]
gi|418974379|ref|ZP_13522289.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK1074]
gi|383348806|gb|EID26758.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK1074]
gi|400185720|gb|EJO19946.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus sp.
BS35b]
Length = 347
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 173/403 (42%), Gaps = 75/403 (18%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSRTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + +G + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWGKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V S+++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-SKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G + ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEVFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHL 472
S +G S+ +++ ++ A S+N +HL
Sbjct: 310 WSMYPLLWDNMGISYPDLIEHLVDFAKE------SFNKHEAHL 346
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 116/287 (40%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTSKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E A+ G SR D F D GEV + E+NT+PG T
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEVFLNELNTMPGFT 308
>gi|403510475|ref|YP_006642113.1| D-alanine--D-alanine ligase [Nocardiopsis alba ATCC BAA-2165]
gi|402800852|gb|AFR08262.1| D-alanine--D-alanine ligase [Nocardiopsis alba ATCC BAA-2165]
Length = 374
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 166/410 (40%), Gaps = 65/410 (15%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R +R+ ++ GG S+E IS +A SVL I D V I R N + ++S
Sbjct: 6 RKIRIAVVFGGRSSEHEISCVTAGSVLSVIDPDRYEVVPVGITRTGN-WVLASGDPE--- 61
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLA---------------------ANVDIVFPTIHGR 174
+ +++ + S+SE LA A VD+V P +HG
Sbjct: 62 ----NLRIDPATKALPSVSEDGLELALPFDTAGQLMTVSPSRGTERLAEVDVVLPLLHGP 117
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234
FGEDG IQ + E V + G G + A DK + G T P ++ + E+
Sbjct: 118 FGEDGTIQGLFEMMGVRYAGAGVFSSAAAMDKVFMKAMLVGNGIPTSP-YVAITARAWET 176
Query: 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY--GVIDSLKKAKGIILEGIDDRVVV 292
E V + + V VKP RAGSS+G++ G D++ A E D +V+V
Sbjct: 177 ERKK--VLDDIAELGTTVFVKPARAGSSVGISKVRDSGDADAVVAAVEAAREH-DPKVLV 233
Query: 293 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
E + G E VL+ G P V P EV V E +++ KYL T
Sbjct: 234 EAQVV-GREIECGVLESEDG--GTPDVSFPAEVH--------VAEGFDFYDFEAKYLSTS 282
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
+ P P +R A+ +F+ +G AR+D ++ TE
Sbjct: 283 GLT--IPAEIPEEATARLRAMAADVFEAMGCEGLARVDFFY-----------------TE 323
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
G +L ++N + G +S Q G ++ ++ +I A R P L
Sbjct: 324 DGEVLVNELNTMPGFTPSSAFPQMWEATGVDYATLVERMITTALRRSPGL 373
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--NHLADLGVLTINKDV 699
+HG GEDGT+Q L E GV Y G GV +S MDKV L N + + I
Sbjct: 114 LHGPFGEDGTIQGLFEMMGVRYAGAGVFSSAAAMDKVFMKAMLVGNGIPTSPYVAITA-- 171
Query: 700 RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
R + + ++D EL + T+ VKPAR G S G++++
Sbjct: 172 -RAWETERKKVLDDIAELGT-----TVFVKPARAGSSVGISKV 208
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 838 VTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRID 897
V V E D E K+ +G+ + PA I EA + + + A+ EG +R+D
Sbjct: 263 VHVAEGFDFYDFEAKYLSTSGLTI---PAEI-PEEATARLRAMAADVFEAMGCEGLARVD 318
Query: 898 AFVNVDNGEVLIIEVNTVPGMTPSTVL 924
F ++GEVL+ E+NT+PG TPS+
Sbjct: 319 -FFYTEDGEVLVNELNTMPGFTPSSAF 344
>gi|350569125|ref|ZP_08937522.1| D-alanine-D-alanine ligase [Propionibacterium avidum ATCC 25577]
gi|348660703|gb|EGY77410.1| D-alanine-D-alanine ligase [Propionibacterium avidum ATCC 25577]
Length = 365
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 134/298 (44%), Gaps = 38/298 (12%)
Query: 164 VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223
V +VFP +HG FGEDG IQ +LE V +VG G A DK+ + +++ G + P
Sbjct: 98 VQVVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILAEAGVLVGPY 157
Query: 224 FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283
+++ E E + ++L+ + VKP R GSSIG++ D L+ A +
Sbjct: 158 VVVRDHEWREDRNAVLKAASRLEY---PLFVKPARGGSSIGISKVMSP-DRLEAAIEVAR 213
Query: 284 EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFN 343
E D++V++E + G E VLD G P +P G + V + D ++
Sbjct: 214 EH-DNKVLIEQGIR-GREIECSVLDGHHG--AAPRASVP--------GEIVVHDPDGFYD 261
Query: 344 YRRKYLPTQQVA-YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFS 402
+ KYL +Q A + + N +++ A F+ LG ARID + P
Sbjct: 262 FEAKYLSGEQKASVQARAKLDDEIRNRVQKVAIKAFRVLGCEGLARIDTFVAPD------ 315
Query: 403 SSETKYGSTEWGTILFTDINLISGMEQTSF--LFQQASKVGFSHSNILRTIIGHACSR 458
GT+ + N + G ++S L QAS G +++ I+ +I A R
Sbjct: 316 -----------GTVYVNEPNTMPGFTRSSGFPLMWQAS--GMTYAQIVSELIELALER 360
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL--- 693
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + LA+ GVL
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMI---LAEAGVLVGP 156
Query: 694 -TINKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
+ +D +ED +LK S+L+ L VKPAR G S G++++ + L
Sbjct: 157 YVVVRDHEWREDRNAVLKA---------ASRLE-YPLFVKPARGGSSIGISKVMSPDRLE 206
Query: 750 VYV--------KALEECLLR---IPPNSFSRAHGMIEMPNPPPEILIFEP 788
+ K L E +R I + HG + P EI++ +P
Sbjct: 207 AAIEVAREHDNKVLIEQGIRGREIECSVLDGHHGAAPRASVPGEIVVHDP 256
>gi|226229301|ref|YP_002763407.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
gi|226092492|dbj|BAH40937.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
Length = 344
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 173/401 (43%), Gaps = 78/401 (19%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSV-------------LDHIQGDDLLVRCYYIDRNLN 122
+ LR+ ++ GG SAER +SL+S + LD +G V +R+L
Sbjct: 3 KSLRITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEG----VLTRETERSLL 58
Query: 123 AYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQ 182
A + SA A + + +L+ G+L E E D +F +HG GEDG IQ
Sbjct: 59 ASGVGSAPPSLEALAGLESR--ALSPVLGTLPELTE-----ADCLFLALHGGQGEDGTIQ 111
Query: 183 EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
+L+ VP+ G+G A A DK+ + + + G T ++++ + + L V
Sbjct: 112 ALLDMVGVPYTGSGHLASALAMDKHLSKVVLRSAGVATA-NWIMAPAPDSAETLDADDVG 170
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGS 300
LD VVVKP++ GS++G++ ++ + ++ + E DD V++E F+ G
Sbjct: 171 RHLD---WPVVVKPSKQGSTVGLS----IVRAPEELAAAVREAFRYDDEVMIERFVPGRE 223
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAYH 357
I+ D +LPT +E+Q V+E +++Y KY P + VA
Sbjct: 224 LTVGILGD----------AVLPT-IEIQ-----PVKE---LYDYECKYTPGMAKEFVAEL 264
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
+P + + + A FQ L L +ARID P G
Sbjct: 265 SPEE-----ASKLADQAKRAFQALKLRGYARIDFRLDPQ-----------------GQPW 302
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ N + GM TS + Q A+ G ++ I+ A ++
Sbjct: 303 CLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAK 343
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 139/311 (44%), Gaps = 73/311 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F+A+HGG GEDGT+Q+LL+ GVPYTG G +AS MDK + + L GV T N
Sbjct: 96 LFLALHGGQGEDGTIQALLDMVGVPYTGSGHLASALAMDKHLSKVVLR---SAGVATANW 152
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ D +T D ++ L + VKP++ G + G++ + E+L V+
Sbjct: 153 IMAPAPDSAETLDAD---DVGRHLDWPVV-VKPSKQGSTVGLSIVRAPEELAAAVR---- 204
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
E F DE++ +
Sbjct: 205 -----------------------------EAFRYDDEVMIERFVPGR------------- 222
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG----INLTPPPASIMSTEA 873
E+TVG++G +++P++ ++ ++ E K+ G L+P AS ++
Sbjct: 223 -ELTVGILG-----DAVLPTIEIQPVKELYDYECKYTPGMAKEFVAELSPEEASKLA--- 273
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
D+ K+ + AL+L G++RID F G+ +E NT+PGMTP T LI QA +
Sbjct: 274 -DQAKRAFQ----ALKLRGYARID-FRLDPQGQPWCLEANTLPGMTP-TSLIPQAAAAAG 326
Query: 934 PMYPHQFFRKV 944
++P R V
Sbjct: 327 VLFPDLCERIV 337
>gi|116252548|ref|YP_768386.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. viciae
3841]
gi|115257196|emb|CAK08291.1| putative D-alanine--D-alanine ligase A [Rhizobium leguminosarum bv.
viciae 3841]
Length = 358
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 160/388 (41%), Gaps = 49/388 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+ ++ GG SAE +S+ SA +V+ ++ + +I R S TP+
Sbjct: 8 LRIAVLFGGRSAEHDVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSSFEDGILATPS 67
Query: 138 DFDFKLESLAQGFGSL----SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
++ + G G + + A H A VDI+FP +HG++GEDG +Q E VP
Sbjct: 68 S-GTEICLVPGGRGRMLAIPAHGAPHDLAKVDILFPVLHGQYGEDGSVQGAAEVARVPLA 126
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KV 252
G G A DK A + G + ++E + + L+ G +
Sbjct: 127 GCGILGSAAALDKDIAKRLLRAAGLPVA-----RAVTIHEGAVPSL---AALEGELGLPL 178
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR-VVVELFLEGGS-EFTAIVLDVG 310
+KP R GSS+GV + S + A + DR ++ E F+ G EF+ + G
Sbjct: 179 FIKPARQGSSVGVAKVHA---SQEVAPALAEAFRHDRTLLAEEFVRGREIEFSVLEDAAG 235
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
F P ++P E ++Y KY+ + A P P V ++
Sbjct: 236 ELFVSRPGEIVPA-------------ESHGFYSYDAKYIDEKGAALKVPAELPQEVETAM 282
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R+ A+ F+ +G ARID +FL T+ L +IN I G
Sbjct: 283 RDVAAKAFRAVGCDGMARID-FFL----------------TDDMQFLVNEINTIPGFTDI 325
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G +++ I+ ++ H +R
Sbjct: 326 SMYSKAMAASGVTYAEIIDRLVDHGMAR 353
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 58/282 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG++Q E VP G G++ S +DK +A L G L + +
Sbjct: 100 LFPVLHGQYGEDGSVQGAAEVARVPLAGCGILGSAAALDK---DIAKRLLRAAG-LPVAR 155
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V E + + L +L L +KPAR G S GVA++ ++++ AL E
Sbjct: 156 AVTIHEGAVPS-----LAALEGELGLP-LFIKPARQGSSVGVAKVHASQEVA---PALAE 206
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
L+ E FV EI FS
Sbjct: 207 AFRH-------------------DRTLLAEEFVRGREIEFSVLEDAAG------------ 235
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
E+ V G+ ++P+ ES S + K+ G L P + + E
Sbjct: 236 -ELFVSRPGE------IVPA----ESHGFYSYDAKYIDEKGAALKVP--AELPQEVETAM 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ A+ +G +RID F+ D+ + L+ E+NT+PG T
Sbjct: 283 RDVAAKAFRAVGCDGMARIDFFLT-DDMQFLVNEINTIPGFT 323
>gi|296130149|ref|YP_003637399.1| D-alanine--D-alanine ligase [Cellulomonas flavigena DSM 20109]
gi|296021964|gb|ADG75200.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
Length = 389
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 164/403 (40%), Gaps = 59/403 (14%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDRNLNAYA 125
GR RV ++ GG S E IS +A VL I D V R D + + +A
Sbjct: 22 GRRPRVMVLFGGRSGEHAISCATAGGVLRAIDRDRYDVVAVGITSDGRWVLADDDADHWA 81
Query: 126 ISSAQV--YSNTPADF-------DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFG 176
I ++ +T D +++ L G L A VD+VFP +HG FG
Sbjct: 82 IRDGRLPRVEDTATHVLLPQGTTDREVQVLRDGV-----LGAPLGA-VDVVFPLLHGPFG 135
Query: 177 EDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESE 235
EDG +Q +LE +V +VG+G A DK+ L ++ G P L G E + +
Sbjct: 136 EDGTLQGMLELADVRYVGSGVLASAVGMDKHMMKLVLAGSGLAVGPFRVLPPGREPDAAT 195
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELF 295
L L + VKP RAGSS+G++ D + D +V+VE
Sbjct: 196 LDAVVADLGL-----PLFVKPARAGSSLGISRVDDKADLADAIAAARVH--DPKVIVEAA 248
Query: 296 LEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA 355
L G E VL SG P LP E+ + D R + +++ KYL V
Sbjct: 249 LF-GREVECGVLGGRSG--APPRASLPGEIVVT-----DARH--SFYDFEAKYLDEAGVT 298
Query: 356 YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGT 415
P P V+ +++ A F+ +G AR+D + P G
Sbjct: 299 LSCPADLPDDVVARVQDVAVRAFEAVGCEGLARVDVFVTPD-----------------GE 341
Query: 416 ILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ +IN + G S + + G +++++ ++G A R
Sbjct: 342 VVVNEINTMPGFTPYSMYPRMWAVSGLDYASLVDELVGLALER 384
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 127/323 (39%), Gaps = 85/323 (26%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--NHLADLGVLT 694
VF +HG GEDGTLQ +LE V Y G GV+AS MDK L L + LA +G
Sbjct: 125 VVFPLLHGPFGEDGTLQGMLELADVRYVGSGVLASAVGMDKHMMKLVLAGSGLA-VGPFR 183
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ R P + + L L VKPAR G S G++R+ DL
Sbjct: 184 VLPPGRE-------PDAATLDAVVADLGLP-LFVKPARAGSSLGISRVDDKADLADA--- 232
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ +R H +P V + LF
Sbjct: 233 ----------IAAARVH---------------DPKVIVEAALFGR--------------- 252
Query: 815 SRWVEITVGVI-GKCGS--MHSLMPSVTVKES-GDILSLEEKFQGGTGINLTPPPASIMS 870
E+ GV+ G+ G+ SL + V ++ E K+ G+ L+ P
Sbjct: 253 ----EVECGVLGGRSGAPPRASLPGEIVVTDARHSFYDFEAKYLDEAGVTLSCP------ 302
Query: 871 TEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926
+ D R++ +A A+ EG +R+D FV D GEV++ E+NT+PG TP +
Sbjct: 303 ADLPDDVVARVQDVAVRAFEAVGCEGLARVDVFVTPD-GEVVVNEINTMPGFTPYS---- 357
Query: 927 QALSEQPPMYPHQFFRKVLDLGS 949
MYP + LD S
Sbjct: 358 --------MYPRMWAVSGLDYAS 372
>gi|254975259|ref|ZP_05271731.1| putative D-alanine:D-alanine ligase (putative
vancomycin/teicoplanin A-type resistance protein)
[Clostridium difficile QCD-66c26]
gi|255092649|ref|ZP_05322127.1| putative D-alanine:D-alanine ligase (putative
vancomycin/teicoplanin A-type resistance protein)
[Clostridium difficile CIP 107932]
gi|255314386|ref|ZP_05355969.1| putative D-alanine:D-alanine ligase (putative
vancomycin/teicoplanin A-type resistance protein)
[Clostridium difficile QCD-76w55]
gi|255517064|ref|ZP_05384740.1| putative D-alanine:D-alanine ligase (putative
vancomycin/teicoplanin A-type resistance protein)
[Clostridium difficile QCD-97b34]
gi|255650168|ref|ZP_05397070.1| putative D-alanine:D-alanine ligase (putative
vancomycin/teicoplanin A-type resistance protein)
[Clostridium difficile QCD-37x79]
gi|260683291|ref|YP_003214576.1| D-alanine:D-alanine ligase [Clostridium difficile CD196]
gi|260686887|ref|YP_003218020.1| vancomycin/teicoplanin A-type resistance protein [Clostridium
difficile R20291]
gi|384360901|ref|YP_006198753.1| vancomycin/teicoplanin A-type resistance protein [Clostridium
difficile BI1]
gi|423089945|ref|ZP_17078288.1| D-ala D-ala ligase protein [Clostridium difficile 70-100-2010]
gi|260209454|emb|CBA62964.1| putative D-alanine:D-alanine ligase (putative
vancomycin/teicoplanin A-type resistance protein)
[Clostridium difficile CD196]
gi|260212903|emb|CBE04146.1| putative D-alanine:D-alanine ligase (putative
vancomycin/teicoplanin A-type resistance protein)
[Clostridium difficile R20291]
gi|357557390|gb|EHJ38939.1| D-ala D-ala ligase protein [Clostridium difficile 70-100-2010]
Length = 366
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 172/404 (42%), Gaps = 77/404 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI--SSAQVYSNTP 136
++ +I GG S E +SL SA +VL+++ + + I R N Y + +NT
Sbjct: 5 KIAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNWYHYIGDYNNIQNNTW 64
Query: 137 ADFDFKL--------------------ESLAQGF--GSLSEFAEH--LAANVDIVFPTIH 172
+ D + ++++Q S E E+ +D VFP +H
Sbjct: 65 FERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLH 124
Query: 173 GRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSE- 230
G+ GEDG +Q + E + +G G+ + DK D S ++ I VP S LL+ S+
Sbjct: 125 GKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDK-DKSHKLVHSEGIKVPKSILLKYSDK 183
Query: 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRV 290
N +ELS + + +KP RAGSS G++ Y + L+ A + E D+ V
Sbjct: 184 FNVAELSKDL--------TYPLFIKPVRAGSSFGISKIYKK-EELQVAVDLAFEH-DNEV 233
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY- 348
++E ++G +VG + +L+ G VD + F+Y KY
Sbjct: 234 IIEENIDG--------FEVGCAVLGNDDLLV---------GRVDEIELSKGFFDYTEKYT 276
Query: 349 LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKY 408
L + ++ H P R + I+E A ++++ LG FAR+D + PS
Sbjct: 277 LKSSKI--HMPARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTPS------------ 322
Query: 409 GSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
G I+F ++N I G S +G S IL II
Sbjct: 323 -----GEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKII 361
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 105/263 (39%), Gaps = 45/263 (17%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSS--GMDANITDP 549
+++ VIFGG+++E VSL S V NL ++ P + + G NI +
Sbjct: 4 KKIAVIFGGNSTEYDVSLQSAFAVLENLNT-EKYDIIPIGITREGNWYHYIGDYNNIQNN 62
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
R +P + + V IE + PD + +N + N +E + +
Sbjct: 63 TWFERDTDIIPVIV----SQNRVKNGIIEFLIPDAVS-----QNHIPNSAIESCENDIKY 113
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
T D VF +HG GEDGT+Q L E G+ G G +
Sbjct: 114 TKLDF-----------------------VFPVLHGKNGEDGTVQGLFELAGIQVIGCGTL 150
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
+S CMDK S L H + V K LLK EL+ L L +K
Sbjct: 151 SSALCMDK-DKSHKLVHSEGIKV--------PKSILLKYSDKFNVAELSKDL-TYPLFIK 200
Query: 730 PARDGCSTGVARLCCAEDLTVYV 752
P R G S G++++ E+L V V
Sbjct: 201 PVRAGSSFGISKIYKKEELQVAV 223
>gi|373253111|ref|ZP_09541229.1| D-alanyl-alanine synthetase A [Nesterenkonia sp. F]
Length = 403
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 169/427 (39%), Gaps = 85/427 (19%)
Query: 67 TMAKEARGGRVLRVGLICGGPSAERGISLNSARSVL---DHIQGDDLLVRCYY------- 116
T EAR RVL ++ GG S+E +S +A VL DH Q D + V
Sbjct: 22 TARAEARRPRVL---VLYGGQSSEHAVSCVTAAGVLEAVDHEQFDVVPVGVTAAGQWTRP 78
Query: 117 -IDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLA----------ANVD 165
+D ++A+A A++ P D +L S G S AE L VD
Sbjct: 79 AVDPRIHAFA-PGAELPRVVPTDSTVQLHSGPSG--SAERGAELLEIGADGSAESLGTVD 135
Query: 166 IVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL 225
+V P +HG FGEDG +Q +LE VP+VG G A DK+ F+ V +F
Sbjct: 136 VVLPLLHGPFGEDGTLQGLLETVGVPYVGAGVLASAVGMDKH----------FMKV-AFT 184
Query: 226 LQGSEVNESEL---SNWFVTNKLDPNSGK---------VVVKPTRAGSSIGVTVAYGVID 273
G V E W DP++ + V VKP RAGSS+G+T ++
Sbjct: 185 AAGLRVGPYETVTARQW----AADPDAARERIRGLRLPVFVKPARAGSSMGIT----RVE 236
Query: 274 SLKKAKGII--LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQG 331
+ ++ I + D +++VE ++ G E VLD G P LP E+ + G
Sbjct: 237 AWEQLDPAIAGAQKHDPKIIVEEGID-GREIECGVLDGRDG--AAPRASLPGEIVVHDGG 293
Query: 332 SVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391
E +++ KY P P V +R A + F+ + +R+D
Sbjct: 294 -----ESHQFYDFTAKYTDAAAADLSCPADLPEEVSAEVRRQAVVAFEAVDGEGLSRVD- 347
Query: 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451
+ E G++ +IN + G S Q G + ++ +
Sbjct: 348 ----------------FFCAEDGSVTINEINTMPGFTPISMYPQMWRATGLDYRELITEL 391
Query: 452 IGHACSR 458
I A R
Sbjct: 392 ITLARQR 398
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 125/315 (39%), Gaps = 74/315 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGTLQ LLE GVPY G GV+AS MDK +A A L V
Sbjct: 137 VLPLLHGPFGEDGTLQGLLETVGVPYVGAGVLASAVGMDKHFMKVAFT-AAGLRVGPYET 195
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R+ P D E L+ VKPAR G S G+ R+ E L
Sbjct: 196 VTARQ--WAADP--DAARERIRGLRLPVF-VKPARAGSSMGITRVEAWEQLD-------- 242
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
P + ++ H P+I++ E + R
Sbjct: 243 -----PAIAGAQKHD--------PKIIVEEGI------------------------DGR- 264
Query: 818 VEITVGVI-GKCGSM--HSLMPSVTVKESGD---ILSLEEKFQGGTGINLTPPPASIMST 871
EI GV+ G+ G+ SL + V + G+ K+ +L+ P + +
Sbjct: 265 -EIECGVLDGRDGAAPRASLPGEIVVHDGGESHQFYDFTAKYTDAAAADLSCP--ADLPE 321
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E + +++ + A+ EG SR+D F ++G V I E+NT+PG TP +
Sbjct: 322 EVSAEVRRQAVVAFEAVDGEGLSRVD-FFCAEDGSVTINEINTMPGFTPIS--------- 371
Query: 932 QPPMYPHQFFRKVLD 946
MYP + LD
Sbjct: 372 ---MYPQMWRATGLD 383
>gi|326773651|ref|ZP_08232934.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
gi|326636881|gb|EGE37784.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
Length = 378
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 158/398 (39%), Gaps = 51/398 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI----SSAQVYS 133
+RV ++ GG S E IS +A VL I D V I + ++ ++
Sbjct: 9 VRVAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGQWLLVEDDPAALELSD 68
Query: 134 NTPADFDFKLESLAQG----------FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
N P E L +G L + VD+V P +HG +GEDG IQ
Sbjct: 69 NRPP-VTITAEGLGRGRLTAPLGGGELTVLGPTGPEILGRVDVVLPLLHGPYGEDGTIQG 127
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+LE +P+VG G A DK + + G T P ++ +
Sbjct: 128 MLEMMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACR 187
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII--LEGIDDRVVVELFLEGGSE 301
L + + VKP RAGSS+G++ +D + G I +D +V+VE + G E
Sbjct: 188 SL---TYPLFVKPARAGSSLGIS----KVDRPEDLAGAIEAARAVDPKVLVESGIV-GRE 239
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL G G D P V P E+ + QG+ + ++Y KYL VA P
Sbjct: 240 VEVAVLQ-GRGDDA-PRVAEPGEIAMDASQGAGE------FYDYETKYLAHDAVAMVCPA 291
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R + + + A+ F+ LG AR+D +FL T+ G + +
Sbjct: 292 RIGPEARDLLMDTAARAFEALGCEGLARVD-FFL----------------TDAGEAVVNE 334
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S G ++ ++ +I A +R
Sbjct: 335 INTMPGFTPFSMYPYMWQVSGLGYTELVSELIELAVAR 372
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 125/305 (40%), Gaps = 66/305 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q +LE G+PY G GV+AS MDK T + L G+ T
Sbjct: 111 VLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 167
Query: 698 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
V + P I++ LT L VKPAR G S G++++ EDL ++A
Sbjct: 168 VVVGPHAWKRDPEAILEACRSLTYP-----LFVKPARAGSSLGISKVDRPEDLAGAIEA- 221
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
+RA P++L+ V + + Q +A R+ G
Sbjct: 222 ------------ARAVD--------PKVLVESGIVGREVEVAVLQGRGDDAPRVAEPG-- 259
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI + + +G+ E K+ + + P + + EA D
Sbjct: 260 ---EIAMD---------------ASQGAGEFYDYETKYLAHDAVAMVCP--ARIGPEARD 299
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 935
AL EG +R+D F+ D GE ++ E+NT+PG TP + M
Sbjct: 300 LLMDTAARAFEALGCEGLARVDFFLT-DAGEAVVNEINTMPGFTPFS------------M 346
Query: 936 YPHQF 940
YP+ +
Sbjct: 347 YPYMW 351
>gi|260904755|ref|ZP_05913077.1| D-alanine/D-alanine ligase [Brevibacterium linens BL2]
Length = 371
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 164/393 (41%), Gaps = 62/393 (15%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVR--------CYYIDRNLNAYAISSAQV 131
V ++ GG S+E +S +A V+ I D V + I + + A
Sbjct: 10 VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDP--- 66
Query: 132 YSNTPADFDFKLESL----AQGFGSLSEFAE---HLAANVDIVFPTIHGRFGEDGGIQEV 184
N P D E + AQG L AE +VD+ FP +HG++GEDG +Q +
Sbjct: 67 -DNMPEVVDNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGL 125
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS--EVNESELSNWFVT 242
E + FVG+G A + DK+ M+ G T P L+ + E +++E +
Sbjct: 126 FELSDTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQDRITG 185
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGG 299
L V VKP RAGSS+GV+ A G+ +L+ A E D +V+VE + G
Sbjct: 186 LGL-----PVFVKPARAGSSMGVSRVESAEGLDQALRSA----FEH-DSKVIVEPQVV-G 234
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
E VL GS D EV + F G ++V + + +++ KYL P
Sbjct: 235 REIECAVL--GSVHD--------REVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCP 284
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
R I+E ++ +F+ +R+D + T+ G +L
Sbjct: 285 ARVDETTTARIQELSAQVFRLFDCTGLSRVDTFV-----------------TDAGEVLIN 327
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
+IN + G TS SK G + ++ +I
Sbjct: 328 EINTLPGFTPTSAYPFMWSKSGIEYPALISELI 360
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 114/294 (38%), Gaps = 73/294 (24%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG GEDGTLQ L E + G GV AS MDK T + H G+ T +
Sbjct: 109 FPLLHGQYGEDGTLQGLFELSDTAFVGSGVFASAASMDKHYTKSLMAHA---GIPTCPWE 165
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + +W ++ Q + + VKPAR G S GV+R+ AE L +
Sbjct: 166 LVTET---------MWEADQAEAQDRITGLGLPVFVKPARAGSSMGVSRVESAEGLDQAL 216
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
++ E ++ I EP V EI DR
Sbjct: 217 RSAFEHDSKV----------------------IVEPQVVGREI--ECAVLGSVHDR---- 248
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
E+ V G+ + V E K+ LT P +T
Sbjct: 249 ------EVRVSFPGE----------IEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTT 292
Query: 873 ALDKCKQRI-ELIANALQL---EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
A RI EL A +L G SR+D FV D GEVLI E+NT+PG TP++
Sbjct: 293 A------RIQELSAQVFRLFDCTGLSRVDTFVT-DAGEVLINEINTLPGFTPTS 339
>gi|302531349|ref|ZP_07283691.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4]
gi|302440244|gb|EFL12060.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4]
Length = 316
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 151/380 (39%), Gaps = 72/380 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S ER +SL S R + ++ + L V + D L
Sbjct: 6 VAVLAGGLSHERDVSLRSGRRLSAALRAEGLTVEEWDTDAGL------------------ 47
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
LE L D V +HG GE+G +Q VLE +VPFVGT S+
Sbjct: 48 ---LERLRT-------------QRPDAVVVALHGGEGENGSVQTVLEMLDVPFVGTHSQG 91
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTR 258
CR+A+DK A + + GF T +L S EL V + + G +++KP +
Sbjct: 92 CRRAWDKPTAKAFVQQAGFSTPDWIVLPHSTFR--ELGAQSVLDAMVERLGLPLILKPDQ 149
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G V + G G D V+ E F++ G E V++ +G + P
Sbjct: 150 GGSALGTQVVREAAELPAAMVGCFAYG--DTVLAERFVD-GVEVAVTVIEGENGAEALP- 205
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+V++ + +++Y +Y + TP R ++ E A
Sbjct: 206 -------------AVEIVPESGVYDYTARYT-AGLTDFFTPARISDEAAKAVSELAVGAH 251
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LGL D +R D P G + F ++NL G+ +TS +
Sbjct: 252 RWLGLRDISRTDAVITPD-----------------GGVHFLEVNLSPGLTETSTVPMAVE 294
Query: 439 KVGFSHSNILRTIIGHACSR 458
G + ++ ++ A +R
Sbjct: 295 AAGTTLGSVFADLVARAVAR 314
>gi|419799174|ref|ZP_14324540.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
parasanguinis F0449]
gi|385698618|gb|EIG28969.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
parasanguinis F0449]
Length = 348
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 160/381 (41%), Gaps = 65/381 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I V+ Y+I ++ + Q + PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGD---FIQTQAFEEKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VG G A
Sbjct: 64 KLMTNETVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKPTRA 259
A DK + G VP +++G ++ E ++ N S V KP+
Sbjct: 124 VAMDKITTKRVLESAGIPQVPYVAVVEGDDLEEK-------IAAIEANLSYPVFTKPSNM 176
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ + + L+ A + + D RV+VE G +
Sbjct: 177 GSSVGISKSENQTE-LRAALELAFK-YDSRVLVE-----------------QGVNAR--- 214
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ ++R
Sbjct: 215 ----EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMAIPAQLDPEVVKTMR 269
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A F+ +G AR D ++ T+ G I ++N + G Q S
Sbjct: 270 TNAEKAFRAIGGLGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWS 312
Query: 432 FLFQQASKVGFSHSNILRTII 452
+G ++++++ ++
Sbjct: 313 MYPLLWDNMGLNYTDLITKLV 333
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 134/347 (38%), Gaps = 78/347 (22%)
Query: 616 DELPMRHSINEWIK------LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
DE M + +W K + KE A VF +HG +GEDG++Q LE +PY G G++
Sbjct: 62 DEKLMTNETVDWSKKVAPSAIYKEG-AVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGIL 120
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
AS MDK+ T L G+ + + D L+ I I L+ + K
Sbjct: 121 ASSVAMDKITTKRVLES---AGIPQVPYVAVVEGDDLEEKIAAIEANLSY-----PVFTK 172
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
P+ G S G+++ +E+ T ALE L F
Sbjct: 173 PSNMGSSVGISK---SENQTELRAALE---------------------------LAF--- 199
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG----D 845
+ D + Q N EI VG++G + S +P VK+ D
Sbjct: 200 -KYDSRVLVEQGVNAR-------------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYD 244
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
++ K L P M T A E A+ G +R D F D G
Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNA--------EKAFRAIGGLGLARCD-FFYTDKG 295
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
E+ + E+NT+PG T + ++ L + + K+++LG E F
Sbjct: 296 EIFLNELNTMPGFTQWS--MYPLLWDNMGLNYTDLITKLVELGKEVF 340
>gi|221632100|ref|YP_002521321.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159]
gi|221156428|gb|ACM05555.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159]
Length = 372
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 109/404 (26%), Positives = 162/404 (40%), Gaps = 70/404 (17%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
R +RV +I GG S E +SL SAR++L HI + + I R
Sbjct: 2 ARKIRVAVIFGGQSGEHDVSLRSARAILRHIDRERFEIVPVGITREGRWLIGGDPLRELA 61
Query: 135 TPADFDFKLESLAQGFGSLSEFAEH-------LAANVDIVFPTIHGRFGEDGGIQEVLEK 187
T + +LE ++ G GS E L +D+VFP +HG +GEDG IQ +LE
Sbjct: 62 TASRLPLELEPVSSGAGSAPATGESALALPGSLPGEIDVVFPVLHGPYGEDGTIQGLLEL 121
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV----NESELSNWFVTN 243
+P+VG G A A DK A K+ F +V L Q + +E + + +
Sbjct: 122 AGIPYVGCGVLASAVAMDKPTA-----KRLFASVG--LEQARWIAFTWHEWQCQHQTLLA 174
Query: 244 KLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
+++ G VKP GSS+GV+ A + L + + D R+VVE
Sbjct: 175 RIERELGYPCFVKPANLGSSVGVSKARRREELLAAIE--LASRYDRRIVVE------EAI 226
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL-PTQQVAYHTPPR 361
A L+V + PV + E+ V RE ++Y KY+ P Q+ P
Sbjct: 227 DARELEVSVLGNEEPVASIVGEI-------VPSRE---FYDYEAKYIDPHSQLLIPAP-- 274
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDG-------WFLPSSTHVFSSSETKYGSTEWG 414
I E + +R+ L F IDG +FL ST G
Sbjct: 275 --------ISEEQAATVRRMALEAFRVIDGAGMARVDFFLERST---------------G 311
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IL ++N I G S + G +++ +I A R
Sbjct: 312 RILINEVNTIPGFTAISMYPKLWEASGLCFRDLITRLIELALER 355
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 123/328 (37%), Gaps = 85/328 (25%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LLE G+PY G GV+AS MDK A A +G+
Sbjct: 100 VVFPVLHGPYGEDGTIQGLLELAGIPYVGCGVLASAVAMDK---PTAKRLFASVGLEQAR 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLC------------VKPARDGCSTGVARLCC 744
I WHE + Q +TL VKPA G S GV++
Sbjct: 157 W------------IAFTWHEW--QCQHQTLLARIERELGYPCFVKPANLGSSVGVSKARR 202
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
E+L IE+ + ++ E ++ E+ S
Sbjct: 203 REELL----------------------AAIELASRYDRRIVVEEAIDARELEVSVL---- 236
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
GN V VG I +P S + E K+ L P
Sbjct: 237 --------GNEEPVASIVGEI---------VP------SREFYDYEAKYIDPHSQLLIPA 273
Query: 865 PASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
P S E +R+ L A + G +R+D F+ G +LI EVNT+PG T +
Sbjct: 274 PIS----EEQAATVRRMALEAFRVIDGAGMARVDFFLERSTGRILINEVNTIPGFT--AI 327
Query: 924 LIHQALSEQPPMYPHQFFRKVLDLGSER 951
++ L E + ++++L ER
Sbjct: 328 SMYPKLWEASGLCFRDLITRLIELALER 355
>gi|315654076|ref|ZP_07906992.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195]
gi|315488772|gb|EFU78418.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195]
Length = 366
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 171/398 (42%), Gaps = 49/398 (12%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
M + + + +RVGLI GG S+E +S+ S R++ I + V +I N ++
Sbjct: 1 MIRRSVMNKKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWI---TNTGFLA 57
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLE 186
S + D +++E+ ++S E +D+ FP +HG GEDG +Q +L
Sbjct: 58 SDEDSRKVLEDPSYQIEN-PHNVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLR 116
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFV 241
+ PFVG A DK + + G +I++ F + ++ +LS +V
Sbjct: 117 ILDKPFVGDDVLAAAITMDKELNKIMAQRAGVPVADWISIKRF--EYNDAKNEKLSYDYV 174
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
+ KL + + VKP+ GSS+G++ D +KA + DD+V+VE ++G
Sbjct: 175 SQKLGTD---LFVKPSNQGSSVGISHVTSAAD-YEKALAEAFK-YDDKVLVEETIKGTEV 229
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
TA++ G D ++ QGS ++Y KY P
Sbjct: 230 ETAVL-----GND--DAIVSGVGQITNAQGS--------WYSYENKYNDNSTSKLQIPAD 274
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
P ++ ++R A ++ AR+D SS+ K ++F ++
Sbjct: 275 LPAEIVETVRSQALKVYHATECSGLARVDSML---------SSDNK--------VIFNEL 317
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
N + G S + +VG S++ ++ ++ +A R+
Sbjct: 318 NSLPGFTNISMYPKLFEQVGISYTELITKLLNYALDRY 355
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 137/339 (40%), Gaps = 73/339 (21%)
Query: 623 SINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 681
+I+ I+L+ + VF VHG +GEDG LQ LL P+ G V+A+ MDK
Sbjct: 81 NISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAITMDKELNK 140
Query: 682 LALNH----LAD-LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 736
+ +AD + + + + E L ++ S+ L VKP+ G S
Sbjct: 141 IMAQRAGVPVADWISIKRFEYNDAKNEKLS--------YDYVSQKLGTDLFVKPSNQGSS 192
Query: 737 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 796
G++ + A D Y KAL E
Sbjct: 193 VGISHVTSAAD---YEKALAEAF------------------------------------- 212
Query: 797 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 856
K D+++ + + E+ V+G ++ S + +T G S E K+
Sbjct: 213 -------KYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQIT-NAQGSWYSYENKYNDN 264
Query: 857 TGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
+ L P PA I+ T + + + +A + G +R+D+ ++ DN +V+ E+N
Sbjct: 265 STSKLQIPADLPAEIVET-----VRSQALKVYHATECSGLARVDSMLSSDN-KVIFNELN 318
Query: 914 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
++PG T + ++ L EQ + + K+L+ +R+
Sbjct: 319 SLPGFT--NISMYPKLFEQVGISYTELITKLLNYALDRY 355
>gi|387879204|ref|YP_006309507.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis FW213]
gi|386792658|gb|AFJ25693.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis FW213]
Length = 348
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 160/381 (41%), Gaps = 65/381 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I V+ Y+I ++ + Q + PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGD---FIQTQAFEEKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VG G A
Sbjct: 64 KLMTNETVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKPTRA 259
A DK + G VP +++G ++ E ++ N S V KP+
Sbjct: 124 VAMDKITTKRVLESAGIPQVPYVAVVEGDDLEEK-------IAAIEANLSYPVFTKPSNM 176
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ + + L+ A + + D RV+VE G +
Sbjct: 177 GSSVGISKSENQTE-LRTALELAFK-YDSRVLVE-----------------QGVNAR--- 214
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ ++R
Sbjct: 215 ----EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMAIPAQLDPEVVKTMR 269
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A F+ +G AR D ++ T+ G I ++N + G Q S
Sbjct: 270 TNAEKAFRAIGGLGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWS 312
Query: 432 FLFQQASKVGFSHSNILRTII 452
+G ++++++ ++
Sbjct: 313 MYPLLWDNMGLNYTDLITKLV 333
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 134/347 (38%), Gaps = 78/347 (22%)
Query: 616 DELPMRHSINEWIK------LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
DE M + +W K + KE A VF +HG +GEDG++Q LE +PY G G++
Sbjct: 62 DEKLMTNETVDWSKKVAPSAIYKEG-AVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGIL 120
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
AS MDK+ T L G+ + + D L+ I I L+ + K
Sbjct: 121 ASSVAMDKITTKRVLES---AGIPQVPYVAVVEGDDLEEKIAAIEANLSY-----PVFTK 172
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
P+ G S G+++ +E+ T ALE L F
Sbjct: 173 PSNMGSSVGISK---SENQTELRTALE---------------------------LAF--- 199
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG----D 845
+ D + Q N EI VG++G + S +P VK+ D
Sbjct: 200 -KYDSRVLVEQGVNAR-------------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYD 244
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
++ K L P M T A E A+ G +R D F D G
Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNA--------EKAFRAIGGLGLARCD-FFYTDKG 295
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
E+ + E+NT+PG T + ++ L + + K+++LG E F
Sbjct: 296 EIFLNELNTMPGFTQWS--MYPLLWDNMGLNYTDLITKLVELGKEVF 340
>gi|423070010|ref|ZP_17058786.1| D-alanine-D-alanine ligase [Streptococcus intermedius F0413]
gi|355366331|gb|EHG14049.1| D-alanine-D-alanine ligase [Streptococcus intermedius F0413]
Length = 350
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 162/376 (43%), Gaps = 49/376 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S+ PAD
Sbjct: 7 QIILLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQ---AGDFIKTQEFSSKPAD 63
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 64 -DEKLMTNDTVIESQKMKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 122
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G +V E +++ N + V KP
Sbjct: 123 SSSIAMDKITTKRVLASVGIPQVPYVAVVEGEDVEEK-------IAEVEANLTYPVFTKP 175
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L A + + D RV++E A ++VG +
Sbjct: 176 SNMGSSVGISKSENK-DELCSALKLAFK-YDSRVLIE------QGVNAREIEVGLFGNEG 227
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV DV A ++Y KY+ ++ P + VI ++ + A
Sbjct: 228 AKSSLPGEV------VKDV----AFYDYEAKYI-DNKITMDIPAKLSEDVIATMCDYAEK 276
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F +G +R D ++ T+ G I ++N + G Q S
Sbjct: 277 AFHAIGGVGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMYPLL 319
Query: 437 ASKVGFSHSNILRTII 452
+G S+S+++ ++
Sbjct: 320 WENMGLSYSDLIEQLV 335
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 114/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA +G+
Sbjct: 86 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSIAMDKITTKRV---LASVGI 142
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + ++ I ++ LT + KP+ G S G+++ +E+
Sbjct: 143 PQVPYVAVVEGEDVEEKIAEVEANLTY-----PVFTKPSNMGSSVGISK---SEN----- 189
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
DE+ + + K R++ +
Sbjct: 190 ---------------------------------------KDELCSALKLAFKYDSRVLIE 210
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG+ G G+ SL P VK+ E K+ I + P +S +
Sbjct: 211 QGVNAREIEVGLFGNEGAKSSL-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 265
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ E +A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 266 VIATMCDYAEKAFHAIGGVGLSRCD-FFYTDKGEIFLNELNTMPGFT 311
>gi|28493472|ref|NP_787633.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist]
gi|39930872|sp|Q83G28.1|DDL_TROWT RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|28476514|gb|AAO44602.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist]
Length = 347
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 171/390 (43%), Gaps = 64/390 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS--SAQVYSNT- 135
R+ L+ GG S E +S SAR++L+HI D+ V I ++ + S S Q Y
Sbjct: 3 RLLLLFGGRSQEHSVSYASARALLEHI-CDEWTVIPVGITKHGDFVYCSTVSEQDYGEVI 61
Query: 136 --------PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
P+ K + Q G S F E D+VFP +HG FGEDG IQ +L+
Sbjct: 62 DNGNRVVWPSRAGCKKIEVVQARGK-SFFVE-----FDLVFPLLHGVFGEDGTIQGMLDL 115
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
++P+VG+G A A DK+ + S G +P +L++G +++ S F+ D
Sbjct: 116 LDIPYVGSGVFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDS--FLKQISDR 173
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID--DRVVVELFLEGGSEFTAI 305
+ + VKP AGSS G T +D ++ I + +VE L+ F ++
Sbjct: 174 FTFPLFVKPVDAGSSFGCT----FVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSL 229
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
+ + G C +V ++ GS ++Y KYL V + P +F
Sbjct: 230 IENNGV-LQCSELVF------VKHSGS-------KFYDYSAKYL--NPVEFVIPAQFDNT 273
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ E AS +F LG +ARID + TE G +L +IN
Sbjct: 274 --DGYAEIASKVFFELGCRHYARID-----------------FFVTESGLVL-NEINTSP 313
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
G+ Q S +F + K +S ++ TI+ A
Sbjct: 314 GLTQKS-IFPSSFK-SMQYSQVIETILASA 341
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 78/296 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTI-- 695
VF +HG GEDGT+Q +L+ +PY G GV AS MDK T + +H A + VL
Sbjct: 95 VFPLLHGVFGEDGTIQGMLDLLDIPYVGSGVFASAAAMDKHYTKILCSH-AGIPVLPWYL 153
Query: 696 ---NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + ++ LK +++ + L VKP G S G + E L V
Sbjct: 154 IKGHAWHKNRDSFLK--------QISDRFTFP-LFVKPVDAGSSFGCTFVDFFEQLPV-- 202
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A+E L HG + I EP ++ E+ S N
Sbjct: 203 -AIEHAL----------QHG---------KSAIVEPALDAPEVFCSLIENN--------- 233
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP----PASI 868
GV+ +C + V VK SG KF + L P PA
Sbjct: 234 ----------GVL-QCSEL------VFVKHSG------SKFYDYSAKYLNPVEFVIPAQF 270
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+T+ + ++ L ++RID FV ++G VL E+NT PG+T ++
Sbjct: 271 DNTDGYAEIASKVFF---ELGCRHYARIDFFVT-ESGLVL-NEINTSPGLTQKSIF 321
>gi|404399200|ref|ZP_10990784.1| D-alanyl-alanine synthetase A [Pseudomonas fuscovaginae UPB0736]
Length = 364
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 162/407 (39%), Gaps = 83/407 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I GG AE +SL SA++V+D + + ID+ + + N +
Sbjct: 4 LRVGIIFGGLGAEHEVSLQSAKNVVDALDRERFEPVLVGIDKQ--------GRWHLNDSS 55
Query: 138 DFDFKLE-----SLAQGFGSLSEF------------AEHLAANVDIVFPTIHGRFGEDGG 180
DF E +L Q L+ ++ L VD++FP +HG GEDG
Sbjct: 56 DFLLNAENPTLIALNQSNRELAVVPGKAGQQLVETGSQSLLDQVDVIFPIVHGTLGEDGC 115
Query: 181 IQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
+Q +L ++PFVG+ GS C DK D S + + + V FL
Sbjct: 116 LQGLLRMADLPFVGSDVLGSAVC---MDK-DISKRLLRDAGLAVTPFL----------TV 161
Query: 238 NWFVTNKLDPNSGK------VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291
N +LD + + +KP GSS+GV+ + + A + L G DD+V+
Sbjct: 162 NRATATRLDFEQARAKLGLPLFIKPANQGSSVGVSKVESA-EQFQAAMALAL-GFDDKVL 219
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VE + G AI+ G D PV G ++ + ++Y KY+
Sbjct: 220 VESAVSGREIECAIL-----GND-QPVA----------SGCGEIVVRSGFYSYDSKYIDA 263
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
+ P IR A FQ LG AR+D + T
Sbjct: 264 EAAEVVVPAAISEEASERIRSVALEAFQVLGCSGLARVDVFL-----------------T 306
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G +L ++N + G + S + G ++S ++ +I A R
Sbjct: 307 DSGEVLINEVNSLPGFTRISMYPKLWQAAGMTYSELVSRLIELALER 353
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 127/323 (39%), Gaps = 78/323 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG LQ LL +P+ G V+ S CMDK I+
Sbjct: 101 VIFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAVCMDK----------------DIS 144
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDL 748
K + R L TP + + ++L + L +KPA G S GV+++ AE
Sbjct: 145 KRLLRDAGLAVTPFLTVNRATATRLDFEQARAKLGLPLFIKPANQGSSVGVSKVESAE-- 202
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
F A + L F+ D++L S + +
Sbjct: 203 -----------------QFQAAMAL---------ALGFD-----DKVLVESAVSGR---- 227
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
EI ++G + S + V+ S + K+ + P A
Sbjct: 228 ----------EIECAILGNDQPVASGCGEIVVRSG--FYSYDSKYIDAEAAEVVVPAA-- 273
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+S EA ++ + L G +R+D F+ D+GEVLI EVN++PG T + ++
Sbjct: 274 ISEEASERIRSVALEAFQVLGCSGLARVDVFLT-DSGEVLINEVNSLPGFT--RISMYPK 330
Query: 929 LSEQPPMYPHQFFRKVLDLGSER 951
L + M + ++++L ER
Sbjct: 331 LWQAAGMTYSELVSRLIELALER 353
>gi|357236616|ref|ZP_09123959.1| D-alanyl-alanine synthetase A [Streptococcus criceti HS-6]
gi|356884598|gb|EHI74798.1| D-alanyl-alanine synthetase A [Streptococcus criceti HS-6]
Length = 348
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 149/345 (43%), Gaps = 54/345 (15%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I + A Q +++ P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNKFTVKTYFITQ---AGDFIKTQEFTSQPSEAE- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A S + + IVFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNATVVASQAVRPSDIYEENAIVFPVLHGPMGEDGSIQGFLEVLCLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V ++G ++ E+ ++ + V VKP G
Sbjct: 124 VAMDKITTKHVLESTGVPQVAYVTYMEGQDMAEA------ISQTEQKLAYPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV- 319
SS+G++ A E G E A L++ +D ++
Sbjct: 178 SSVGISKA----------------------------ENGEELCA-ALELALKYDSRILIE 208
Query: 320 --LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
++ E+E+ G+ ++ KD A ++Y KY+ ++ P + V+
Sbjct: 209 QGVVAREIEVGILGNSQIKTTQPGEVVKDVAFYDYEAKYI-DNKITMDIPAKVSEEVMTK 267
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
+R A F+ LG C +R D +FL S ++ + T G T+W
Sbjct: 268 MRTYAETAFRALGGCGLSRCD-FFLTESGEIYLNELNTMPGFTQW 311
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 111/287 (38%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T + L GV
Sbjct: 84 EENAIVFPVLHGPMGEDGSIQGFLEVLCLPYVGTNVLSSSVAMDKITTK---HVLESTGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + I +L + VKPA G S G+++ E+L
Sbjct: 141 PQVAYVTYMEGQDMAEAISQTEQKL-----AYPVFVKPANMGSSVGISKAENGEELCA-- 193
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
ALE L K R++ +
Sbjct: 194 -ALELAL--------------------------------------------KYDSRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + + P VK+ E K+ I + P +S E
Sbjct: 209 QGVVAREIEVGILGN-SQIKTTQPGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--VSEE 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ K + E AL G SR D F+ ++GE+ + E+NT+PG T
Sbjct: 264 VMTKMRTYAETAFRALGGCGLSRCDFFLT-ESGEIYLNELNTMPGFT 309
>gi|302190711|ref|ZP_07266965.1| D-alanyl-alanine synthetase A [Lactobacillus iners AB-1]
gi|312874986|ref|ZP_07735005.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
LEAF 2053A-b]
gi|311089731|gb|EFQ48156.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
LEAF 2053A-b]
Length = 360
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 165/401 (41%), Gaps = 71/401 (17%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ +RVGLI GG S+E +S+ S R++ I + V +I N ++S
Sbjct: 3 KKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWI---TNTGFLASDADSRKV 59
Query: 136 PADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D +++E+ ++S E +D+ FP +HG GEDG +Q +L + PFVG
Sbjct: 60 LEDPSYQIEN-PHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
A DK + + G +I++ F + ++ +LS +V+ KL +
Sbjct: 119 DDVLAAAITMDKELNKIMAQRAGVPVADWISIKRF--EYNDAKNEKLSYDYVSQKLGTD- 175
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVL 307
+ VKP+ GSS+G++ + S K + E DD+V+VE ++G
Sbjct: 176 --LFVKPSNQGSSVGIS----HVTSASDYKAALAEAFKYDDKVLVEETIKG--------- 220
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVD---------VREKDAIFNYRRKYLPTQQVAYHT 358
TEVE G+ D + + ++Y KY
Sbjct: 221 ---------------TEVETAVLGNDDAIVSGVGQITNAQGSWYSYENKYNDNSTSKLQI 265
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P P +I ++R A ++ AR+D SS+ K ++F
Sbjct: 266 PAALPSEIIETVRRQALKVYHATECSGLARVDSML---------SSDNK--------VIF 308
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G S + +VG S++ ++ ++ +A R+
Sbjct: 309 NELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYALDRY 349
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 66/319 (20%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LAD-LGVL 693
F VHG +GEDG LQ LL P+ G V+A+ MDK + +AD + +
Sbjct: 92 FPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAITMDKELNKIMAQRAGVPVADWISIK 151
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
+ + E L ++ S+ L VKP+ G S G++ + A D Y
Sbjct: 152 RFEYNDAKNEKLS--------YDYVSQKLGTDLFVKPSNQGSSVGISHVTSASD---YKA 200
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E K D+++ +
Sbjct: 201 ALAEAF--------------------------------------------KYDDKVLVEE 216
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
+ E+ V+G ++ S + +T G S E K+ + L P A + +E
Sbjct: 217 TIKGTEVETAVLGNDDAIVSGVGQIT-NAQGSWYSYENKYNDNSTSKLQIPAA--LPSEI 273
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
++ +++ + +A + G +R+D+ ++ DN +V+ E+N++PG T + ++ L EQ
Sbjct: 274 IETVRRQALKVYHATECSGLARVDSMLSSDN-KVIFNELNSLPGFT--NISMYPKLFEQV 330
Query: 934 PMYPHQFFRKVLDLGSERF 952
+ + K+L+ +R+
Sbjct: 331 GISYTELITKLLNYALDRY 349
>gi|256397141|ref|YP_003118705.1| D-alanyl-alanine synthetase A [Catenulispora acidiphila DSM 44928]
gi|256363367|gb|ACU76864.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
Length = 394
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 166/417 (39%), Gaps = 74/417 (17%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RV ++ GG S+E IS +A SVLD ++ R + + A V ++ P
Sbjct: 11 IRVAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGI---ASDGRWVLADLPD 67
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAAN------------------------------VDIV 167
D +LA G L E +A VD+V
Sbjct: 68 GGDL---NLAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVV 124
Query: 168 FPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227
P +HG +GEDG +Q +LE VP+VG+G A + DK +++ GF P +++
Sbjct: 125 LPLLHGPYGEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVR 184
Query: 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG------VIDSLKKAKGI 281
+ +E V ++ V VKP RAGSS+G+T ID+ ++
Sbjct: 185 PRDWG-TEEGRAAVRLAVEELGYPVFVKPARAGSSMGITKVDAPEELDQAIDAARRH--- 240
Query: 282 ILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAI 341
D +V+VE +E G E VL+ G+G LP E+ V A
Sbjct: 241 -----DPKVLVEAAIE-GREIECGVLE-GAGPQDPAEASLPAELR--------VTGPHAF 285
Query: 342 FNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVF 401
++++ KYL P R I IR A +F+ LG AR+D F
Sbjct: 286 YDFQAKYL-DGSTEVDIPARLSAEEIEDIRGQAVGVFETLGCEGLARVD----------F 334
Query: 402 SSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
E+ G G + +IN + G TS Q G S+ ++ +I A R
Sbjct: 335 FYQESADGGP--GRFIVNEINTMPGFTPTSMFPQMWQAAGLSYPELIARLIDTALLR 389
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 117/305 (38%), Gaps = 80/305 (26%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
V +HG GEDGTLQ LLE GVPY G GV+AS MDK LA G
Sbjct: 123 VVLPLLHGPYGEDGTLQGLLELAGVPYVGSGVLASAVSMDK---EFMKRLLAQAGFEVGP 179
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCK--------TLCVKPARDGCSTGVARLCCAEDL 748
+V R D W + + + VKPAR G S G+ ++ E+L
Sbjct: 180 YEVVRPRD---------WGTEEGRAAVRLAVEELGYPVFVKPARAGSSMGITKVDAPEEL 230
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
+ A +R H P++L+ E +E
Sbjct: 231 DQAIDA-------------ARRHD--------PKVLV-EAAIEGR--------------- 253
Query: 809 LMWKGNSRWVEITVGVIGKCGSMH----SLMPSVTVKESGDILSLEEKF-QGGTGINLTP 863
EI GV+ G SL + V + K+ G T +++
Sbjct: 254 ----------EIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLDGSTEVDI-- 301
Query: 864 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAF----VNVDNGEVLIIEVNTVPGMT 919
PA +S E ++ + + + L EG +R+D F + G ++ E+NT+PG T
Sbjct: 302 -PAR-LSAEEIEDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFT 359
Query: 920 PSTVL 924
P+++
Sbjct: 360 PTSMF 364
>gi|423350042|ref|ZP_17327697.1| D-alanine-D-alanine ligase [Scardovia wiggsiae F0424]
gi|393702534|gb|EJD64740.1| D-alanine-D-alanine ligase [Scardovia wiggsiae F0424]
Length = 429
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 127/311 (40%), Gaps = 44/311 (14%)
Query: 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITV 221
++D VFP +HG +GEDG +Q +L VPFVG G A DK+ + + + G
Sbjct: 143 GHIDAVFPVLHGTYGEDGTVQGLLSMMGVPFVGCGVLASAACMDKHYTKVILEQAGIPVA 202
Query: 222 PSFLLQGSEVNESELSNWFVTNKLD-----PNSG---KVVVKPTRAGSSIGVTVAYGVID 273
P L + + + F N D +G + VKP+R+GSS GVT D
Sbjct: 203 PGITL---DTRSYDAGSRFEQNGFDLLMQVEEAGLEYPLFVKPSRSGSSFGVTKIDYDDD 259
Query: 274 SLKKAKGIILEGI------DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL 327
S + + ++ E + D RV+VE ++ E V G P P E+ L
Sbjct: 260 SQARTRKLV-EAVYEASQHDWRVLVEQGMD-AREIECAVFSPRRG--QAPQTAFPGEIVL 315
Query: 328 QFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFA 387
D E+D +++ KY+ Q P P +++ +R+ A+ F + +
Sbjct: 316 ------DKPEEDTFYDFDSKYMDAQASHVEIPAHLPQDILDKVRQVAAKAFTAVDGEGLS 369
Query: 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 447
R+D + P GT++ +IN + G S + G S +
Sbjct: 370 RVDTFVTPD-----------------GTVMVNEINTLPGFTSISMYAKAWEATGISSREL 412
Query: 448 LRTIIGHACSR 458
+ ++I R
Sbjct: 413 IGSLIEGVLQR 423
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 115/289 (39%), Gaps = 48/289 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LL GVP+ G GV+AS CMDK T + L I
Sbjct: 147 AVFPVLHGTYGEDGTVQGLLSMMGVPFVGCGVLASAACMDKHYTKVILEQAGIPVAPGIT 206
Query: 697 KDVRRKE--DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
D R + + D+ ++ L VKP+R G S GV ++ +D +
Sbjct: 207 LDTRSYDAGSRFEQNGFDLLMQVEEAGLEYPLFVKPSRSGSSFGVTKIDYDDDSQARTRK 266
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG- 813
L E + +++ + L+ +G
Sbjct: 267 LVEAVY---------------------------------------EASQHDWRVLVEQGM 287
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTV---KESGDILSLEEKFQGGTGINLTPPPASIMS 870
++R +E V + + + P V E + K+ ++ P + +
Sbjct: 288 DAREIECAVFSPRRGQAPQTAFPGEIVLDKPEEDTFYDFDSKYMDAQASHVEIP--AHLP 345
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ LDK +Q A+ EG SR+D FV D G V++ E+NT+PG T
Sbjct: 346 QDILDKVRQVAAKAFTAVDGEGLSRVDTFVTPD-GTVMVNEINTLPGFT 393
>gi|349685772|ref|ZP_08896914.1| D-alanine--D-alanine ligase [Gluconacetobacter oboediens 174Bp2]
Length = 313
Score = 87.0 bits (214), Expect = 5e-14, Method: Composition-based stats.
Identities = 102/381 (26%), Positives = 151/381 (39%), Gaps = 74/381 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG SAER +SL S R+V D ++G VRC ID + AI
Sbjct: 5 RVSVLMGGMSAEREVSLASGRNVADALRGLGHDVRC--IDAGPDLLAI------------ 50
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+S+ H D+VF +HGRFGEDG IQ VL+ + + +G R
Sbjct: 51 --------------VSDLQAH---RPDVVFNAMHGRFGEDGSIQGVLDWMGIAYTHSGVR 93
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK A G +L S++ + DP VVKP
Sbjct: 94 ASATAMDKDAARTVFMAAGLPVAAGLVLTPSQLEPA-----------DPIPAPYVVKPLN 142
Query: 259 AGSSIGVTVAY-GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+GV + + G A+G ++VE ++ G E T VL+
Sbjct: 143 EGSSVGVDIIHPGSNRRATLARGWTF---GTHMLVEEYIP-GRELTVGVLE--------D 190
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
L T++ G + ++Y+ KY + P R RE A
Sbjct: 191 RALTVTDITPTGSGP-------SFYDYQAKYAAGGS-CHELPARIHPEAFEQARELALAA 242
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
+ LG +R D F +T G+ G ++ + N GM TS L +QA
Sbjct: 243 HRALGCRGASRTD----------FRYDDTA-GADRPGRLVILETNTQPGMTPTSLLPEQA 291
Query: 438 SKVGFSHSNILRTIIGHACSR 458
+ G ++ + + +I HA R
Sbjct: 292 AACGMDYAALCQWMIDHATCR 312
Score = 47.8 bits (112), Expect = 0.029, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVA 679
VF A+HG GEDG++Q +L+ G+ YT GV AS T MDK A
Sbjct: 62 VFNAMHGRFGEDGSIQGVLDWMGIAYTHSGVRASATAMDKDA 103
>gi|444304774|ref|ZP_21140564.1| D-alanyl-alanine synthetase A [Arthrobacter sp. SJCon]
gi|443482967|gb|ELT45872.1| D-alanyl-alanine synthetase A [Arthrobacter sp. SJCon]
Length = 379
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 165/395 (41%), Gaps = 50/395 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAISSA 129
RV ++ GG S+E +S +A VL I D V I + + +++SS+
Sbjct: 15 RVAVLFGGRSSEHAVSCVTAAGVLGAINKDKYEVIPIGIAKSGQWVLASADTAQWSLSSS 74
Query: 130 QVYSNTPADFDFKLESLAQG----FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
+ P+ L + + +E + L VD+VFP +HG FGEDG IQ +L
Sbjct: 75 SLPEVVPSAETVTLAEIGGEHQLIVAAPNEVPKELG-TVDVVFPLLHGPFGEDGTIQGLL 133
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
E + +VG G A DK+ + G P + + + + V ++
Sbjct: 134 ELSDTRYVGAGVLASAVGMDKHFMKVVFEAAGLQVGPYIAVTDRQWRKDPEA---VRKQV 190
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFT 303
D V VKP RAGSS+G++ +DS++ I E D ++V+E + G E
Sbjct: 191 DRLGFPVFVKPARAGSSMGIS----KVDSMEHLDSAIEEARRHDLKLVIEAGI-AGREIE 245
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL+ G G D P +P E+ + G +++ KY+ A P P
Sbjct: 246 CAVLE-GRGTDA-PRTSMPGEISVAGGGH-------EFYDFEAKYVEDNAAALSCPADMP 296
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
I +RE A+ F +G +R+D ++ P G ++ +IN
Sbjct: 297 EEAIARVRELAAAAFDAVGAEGLSRVDFFYTPE-----------------GELVINEINT 339
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S Q + G S+ +++ +I A +R
Sbjct: 340 MPGFTPKSMYPQMWAASGLSYPDLIDELIYLALNR 374
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 120/297 (40%), Gaps = 74/297 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-------VATSLALNHLADL 690
VF +HG GEDGT+Q LLE Y G GV+AS MDK A L + +
Sbjct: 115 VFPLLHGPFGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFEAAGLQVGPYIAV 174
Query: 691 GVLTINKD---VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
KD VR++ D L P+ VKPAR G S G++++ E
Sbjct: 175 TDRQWRKDPEAVRKQVDRLGFPVF----------------VKPARAGSSMGISKVDSMEH 218
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNA 806
L A+EE +R H + L+ E + EI + + +A
Sbjct: 219 LD---SAIEE----------ARRHDL---------KLVIEAGIAGREIECAVLEGRGTDA 256
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
R G EI+V G H + E K+ L+ P
Sbjct: 257 PRTSMPG-----EISV-----AGGGH------------EFYDFEAKYVEDNAAALSCP-- 292
Query: 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
+ M EA+ + ++ +A+ EG SR+D F GE++I E+NT+PG TP ++
Sbjct: 293 ADMPEEAIARVRELAAAAFDAVGAEGLSRVD-FFYTPEGELVINEINTMPGFTPKSM 348
>gi|414152881|ref|ZP_11409208.1| D-alanine--D-alanine ligase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411455263|emb|CCO07110.1| D-alanine--D-alanine ligase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 310
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 152/384 (39%), Gaps = 89/384 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ +G++CGG SAER +SL S +V A+ +A T
Sbjct: 1 MHIGVLCGGRSAEREVSLRSGEAVYR---------------------ALLAAGYTCVTKI 39
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAAN-VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
D L E L N +++ F +HG++GEDG IQ +LE ++P+ G+G
Sbjct: 40 DVGIDL-------------VEQLKKNKIELAFLALHGKYGEDGTIQGLLEMLDIPYTGSG 86
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV---- 252
A A +K +G I P F + VN E+ TN LD + +V
Sbjct: 87 VLASALAINKIATKKIFMMEG-IPTPRFTV----VNRREV----YTNGLDQAAVRVFKEV 137
Query: 253 ----VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
VVK GS+IG++ + D + A LE D V++E F+ G E TA VL
Sbjct: 138 GIPAVVKANTQGSTIGISFVHQQ-DKMSSAIQNALE-YDHDVLIEEFI-AGMEVTASVL- 193
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
V LP +++ +++Y KY P + PPR P
Sbjct: 194 -----GNEEAVALPL---------IEITSAKGVYDYEAKYTPGLS-DHIIPPRLPEATQG 238
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
I+E A ++ +G AR+D F+ F+ +IN + GM
Sbjct: 239 YIKELAVKAYRAIGCRGLARVD--FIVRQRDAFA----------------LEINTLPGMT 280
Query: 429 QTSFLFQQASKVGFSHSNILRTII 452
TS A G ++R I+
Sbjct: 281 ATSLFPDAAKHAGIEFPELVRRIV 304
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
+L K F+A+HG GEDGT+Q LLE +PYTG GV+AS ++K+AT
Sbjct: 48 QLKKNKIELAFLALHGKYGEDGTIQGLLEMLDIPYTGSGVLASALAINKIAT 99
>gi|325001011|ref|ZP_08122123.1| D-alanine--D-alanine ligase [Pseudonocardia sp. P1]
Length = 311
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 154/380 (40%), Gaps = 72/380 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ ++ GG S ER +SL S R + ++ + + VR + +D L +++S+ P
Sbjct: 1 MAVLAGGLSHEREVSLRSGRRLAGALRANGVDVREWDVDSAL------LERLHSDRP--- 51
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
D+V +HG GE+G +Q++LE +PFVGT S A
Sbjct: 52 -------------------------DVVAVALHGGEGENGAVQQILELLQIPFVGTPSGA 86
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTR 258
CR+A+DK E+ + G T L S EL V + G +V+KP +
Sbjct: 87 CRRAWDKPSVKAELVRAGLTTPDWVALPHSTFR--ELGAQGVLGAIVDRLGLPLVLKPDQ 144
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++GV V D L A + D V+ E F+ G ++V D G +
Sbjct: 145 GGSALGVQVVRSA-DDLPSAM-VSSFAYADTVLAEQFVAGTEVAVSVVHD---GDEAR-- 197
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
L P EVE+ ++Y +Y P +H P R V ++ E A
Sbjct: 198 ALPPVEVEV----------PSGFYDYTSRYTPG-AATFHCPARLSSDVQQTLAETALTAH 246
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG+ D +R+D G + ++N+ G+ TS L +
Sbjct: 247 RLLGMRDVSRMDAIVDGD-----------------GRVHVLEMNVSPGLTDTSLLPTAVA 289
Query: 439 KVGFSHSNILRTIIGHACSR 458
G + + + ++ A +R
Sbjct: 290 ADGSDLATVYQALVDRAATR 309
>gi|350269347|ref|YP_004880655.1| putative D-alanine--D-lactate ligase [Oscillibacter valericigenes
Sjm18-20]
gi|348594189|dbj|BAK98149.1| putative D-alanine--D-lactate ligase [Oscillibacter valericigenes
Sjm18-20]
Length = 349
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 158/386 (40%), Gaps = 57/386 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISS--AQVYSNT 135
L + ++ GG S E +SL SA SV+ I + I N Y ++ S+T
Sbjct: 4 LNIAILFGGCSPEYSVSLQSAYSVIKQIDTYKFMPILIGISSKGNWYRFDGDIEKIASDT 63
Query: 136 ---PADFDFKLESLAQGFGSLSEFAEHLAAN--VDIVFPTIHGRFGEDGGIQEVLEKYNV 190
P+D + + +L F +D FP +HG+ GEDG +Q + E +
Sbjct: 64 WCNPSDCLPAVILPDRETHTLLVFHSDKVVKLPIDAAFPVLHGKNGEDGMVQGLFEMAGI 123
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNS 249
P VG G+ A DK D + +++ + +P SF+L+ + + +
Sbjct: 124 PLVGCGTLASALCMDK-DRAHKLAHAAGVQIPVSFILK------KNMDAGIALERAESLG 176
Query: 250 GKVVVKPTRAGSSIGVTVAYGVID--SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ VKP RAGSS G+T VID L A + E DD V++E +
Sbjct: 177 YPLFVKPVRAGSSYGIT---KVIDRHDLPAAIKLAFE-YDDEVILEESI----------- 221
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
+GF+ V+ + + G VD + D FN+ KY + A H P R
Sbjct: 222 ---TGFEVGCAVMGNENLTV---GEVDEIELSDGFFNFTEKY-TLKTSAIHVPARISEEK 274
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
I++ A ++Q LG FAR+D FL + G ++F +IN I G
Sbjct: 275 AEEIKQTAKTIYQALGCRGFARVD-MFLNAD----------------GRVIFNEINTIPG 317
Query: 427 MEQTSFLFQQASKVGFSHSNILRTII 452
S VG S ++ +I
Sbjct: 318 FTSHSRYPNMMKAVGISFEQVISHVI 343
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 116/291 (39%), Gaps = 62/291 (21%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
K+ K F +HG GEDG +Q L E G+P G G +AS CMDK + L H A
Sbjct: 91 KVVKLPIDAAFPVLHGKNGEDGMVQGLFEMAGIPLVGCGTLASALCMDK-DRAHKLAHAA 149
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + ++ +++ D I E L L VKP R G S G+ ++ DL
Sbjct: 150 GVQI-PVSFILKKNMD------AGIALERAESLG-YPLFVKPVRAGSSYGITKVIDRHDL 201
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
+K L FE DE++ T
Sbjct: 202 PAAIK------------------------------LAFE---YDDEVILEESITGFEVGC 228
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
+ GN +TVG + + ++ S + EK+ T P +
Sbjct: 229 AVM-GNEN---LTVGEVDE------------IELSDGFFNFTEKYTLKTSAIHVP---AR 269
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+S E ++ KQ + I AL GF+R+D F+N D G V+ E+NT+PG T
Sbjct: 270 ISEEKAEEIKQTAKTIYQALGCRGFARVDMFLNAD-GRVIFNEINTIPGFT 319
>gi|15614184|ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
gi|20137662|sp|Q9KCF0.1|DDL_BACHD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|10174238|dbj|BAB05340.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
Length = 305
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 97/382 (25%), Positives = 163/382 (42%), Gaps = 90/382 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++ ++ GG SAER +SL+S + +++ ++ N + +
Sbjct: 1 MKIAVLYGGTSAEREVSLSSGKGIMEALKA--------------NGHEVIG--------- 37
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DF + + + +VD+VF +HGR GEDG +Q +L+ N+P+VGTG
Sbjct: 38 -IDFHPDQVRD----------LVDLDVDLVFIGLHGRLGEDGKVQALLDLLNIPYVGTGV 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK A L K G +L + +N F P VVVKP
Sbjct: 87 QGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYD----ANAFNFTGTYP----VVVKPN 138
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI------DDRVVVELFLEGGSEFTAIVLDVGS 311
+ GS+IG+TVA + + +L+GI DD +++E F+ G+E T VL
Sbjct: 139 QEGSTIGLTVA--------ETEEELLQGIEEAFRHDDTILIEEFI-AGTEVTVAVLGNKG 189
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
PV V++ K+ +++Y KY P + P R ++
Sbjct: 190 EERSLPV--------------VEIVPKNKLYDYESKYAPGMS-EHIVPARISEEHTAYVQ 234
Query: 372 EGASLLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+ A Q LG CD ++R+D + +P+ GS + +N + GM T
Sbjct: 235 QAAVRAHQALG-CDVYSRVD-FIVPND-----------GSDP----VILKVNTLPGMTPT 277
Query: 431 SFLFQQASKVGFSHSNILRTII 452
S A VG S+ +++T +
Sbjct: 278 SLYPDAAKGVGMSYEEMIQTFV 299
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 113/291 (38%), Gaps = 74/291 (25%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
FI +HG +GEDG +Q+LL+ +PY G GV S MDK L
Sbjct: 57 FIGLHGRLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFE----------KAG 106
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQC------KTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+R E++ + H T + VKP ++G + G L AE
Sbjct: 107 IRVAEEV-------VLHSFTYDANAFNFTGTYPVVVKPNQEGSTIG---LTVAET----- 151
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
EE LL+ +F + ++ E F+
Sbjct: 152 ---EEELLQGIEEAFRH-----------DDTILIEEFI---------------------- 175
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
E+TV V+G G SL P V + + E K+ G ++ P S T
Sbjct: 176 ---AGTEVTVAVLGNKGEERSL-PVVEIVPKNKLYDYESKYAPGMSEHIVPARISEEHTA 231
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
+ + R AL + +SR+D V D + +I++VNT+PGMTP+++
Sbjct: 232 YVQQAAVRAH---QALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSL 279
>gi|405980048|ref|ZP_11038389.1| D-alanine-D-alanine ligase [Actinomyces turicensis ACS-279-V-Col4]
gi|404391423|gb|EJZ86487.1| D-alanine-D-alanine ligase [Actinomyces turicensis ACS-279-V-Col4]
Length = 378
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 102/408 (25%), Positives = 166/408 (40%), Gaps = 70/408 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG S E +S +A +L I + V I + ++ + P+
Sbjct: 8 RVLIVFGGRSGEHEVSCATAAGILRAIDREKWDVLPVGITHDGEWVRVA------DDPSA 61
Query: 139 FDFKLES------------LAQGFGSL---------SEFAEHLAA-----NVDIVFPTIH 172
+FK LA G GSL S H++ +VD+V P +H
Sbjct: 62 LEFKDGHGQSVTAGASRVVLAPGSGSLLDVTYEGDPSALDSHVSGVEDLGHVDVVLPLLH 121
Query: 173 GRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN 232
G +GEDG IQ + E NV +VG G + + DK+ ++ G L+ +
Sbjct: 122 GPYGEDGTIQGLFEMANVRYVGCGVTSSAISMDKHLTKTVLAAAGIDVGQWELITALQWA 181
Query: 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRV 290
E + T+++ V VKP RAGSSIG+T +DS + + E D RV
Sbjct: 182 EDPKA---CTDRVSALGYPVFVKPCRAGSSIGIT----KVDSAGELAVAMKEAQNADPRV 234
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
+VE + G E VL +G HP E+E+ + ++Y KY+
Sbjct: 235 IVEAGIV-GREIECGVLGSATG---HPRTAPLGEIEVP---------EGEFYDYELKYVD 281
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
T+ + P IR+ A+ F L AR+D F + ET
Sbjct: 282 TEAIGLVCPANVAPEFEKKIRDTAARAFDALECEGLARVD---------FFHNEET---- 328
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G+++ ++N + G S Q +K G +++++ T++ A R
Sbjct: 329 ---GSVIINEVNTMPGFTPISMFPQMWAKGGLDYTSLIDTLLEEALDR 373
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 118/316 (37%), Gaps = 74/316 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q L E V Y G GV +S MDK HL +
Sbjct: 116 VLPLLHGPYGEDGTIQGLFEMANVRYVGCGVTSSAISMDK--------HLTKTVLAAAGI 167
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
DV + E + + T ++ + VKP R G S G+ ++ A +L V +K
Sbjct: 168 DVGQWELITALQWAEDPKACTDRVSALGYPVFVKPCRAGSSIGITKVDSAGELAVAMK-- 225
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
E N P +++ V
Sbjct: 226 -------------------EAQNADPRVIVEAGIVGR----------------------- 243
Query: 816 RWVEITVGVIGKCGSMHSLMP--SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
EI GV+G P + V E G+ E K+ I L P + ++ E
Sbjct: 244 ---EIECGVLGSATGHPRTAPLGEIEVPE-GEFYDYELKYVDTEAIGLVCP--ANVAPEF 297
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
K + +AL+ EG +R+D F N + G V+I EVNT+PG TP +
Sbjct: 298 EKKIRDTAARAFDALECEGLARVDFFHNEETGSVIINEVNTMPGFTPIS----------- 346
Query: 934 PMYPHQFFRKVLDLGS 949
M+P + + LD S
Sbjct: 347 -MFPQMWAKGGLDYTS 361
>gi|291302440|ref|YP_003513718.1| D-alanine--D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
gi|290571660|gb|ADD44625.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
Length = 364
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 162/405 (40%), Gaps = 67/405 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI-------------------DR 119
+V ++ GG S E +S SA V+ + + V I D
Sbjct: 5 KVAVVLGGRSVEHPVSCASAAGVIAALDPEQYEVVAVGITQAGQWLSVDARSAKLALGDG 64
Query: 120 NLNAYAISSAQ--VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGE 177
N+ + S Q V + P D + A G LS +VD+VFP +HG +GE
Sbjct: 65 NVPEISADSGQHVVLAADPTMKDVAITDAAGGARVLS--------DVDVVFPVLHGAYGE 116
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
DG IQ +LE +VP+VG+ + + DK D + K I V +++ + SE
Sbjct: 117 DGTIQGLLEMADVPYVGSNVLSSAASMDK-DFMKRLLKAEGIPVGDYVVLKRDQTLSEAE 175
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297
+ V VKP+RAGSS+G++ D L KA +D +V+VE
Sbjct: 176 KQRLGL-------PVFVKPSRAGSSLGISKVTD-WDDLDKAIATA-RAVDPKVLVEAAFT 226
Query: 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357
G E VL+ G P P EV + + F++ KYL + Y
Sbjct: 227 GVRELECGVLEREDG--GAPDTTPPFEVLIA--------GTEGWFDFEAKYLASGS-PYD 275
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P P IRE A+ +F + D AR+D +FL S GT+
Sbjct: 276 LAPDLPEGTAERIRELAARVFTVMDCSDLARVD-FFLASD----------------GTVY 318
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+IN + G+ S + + G + ++ ++ A +R L
Sbjct: 319 VNEINTMPGLTPGSGVPVAWANAGVDYPELVARLVRLAANRGTGL 363
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 107/297 (36%), Gaps = 82/297 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE VPY G V++S MDK L G+ +
Sbjct: 106 VFPVLHGAYGEDGTIQGLLEMADVPYVGSNVLSSAASMDK---DFMKRLLKAEGIPVGDY 162
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL--------- 748
V +++ L E + + VKP+R G S G++++ +DL
Sbjct: 163 VVLKRDQTL--------SEAEKQRLGLPVFVKPSRAGSSLGISKVTDWDDLDKAIATARA 214
Query: 749 ---TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
V V+A + + R G PP E+LI
Sbjct: 215 VDPKVLVEAAFTGVRELECGVLEREDGGAPDTTPPFEVLI-------------------- 254
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
G W + + GS + L P L E GT
Sbjct: 255 ------AGTEGWFDFEAKYLA-SGSPYDLAP-----------DLPE----GTA------- 285
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
++ ++ + + +R+D F+ D G V + E+NT+PG+TP +
Sbjct: 286 ---------ERIRELAARVFTVMDCSDLARVDFFLASD-GTVYVNEINTMPGLTPGS 332
>gi|417917583|ref|ZP_12561142.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
parasanguinis SK236]
gi|342830220|gb|EGU64559.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
parasanguinis SK236]
Length = 348
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 160/380 (42%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I V+ Y+I ++ + Q + PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGD---FIQTQAFEEKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VG G A
Sbjct: 64 KLMTNETVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V E + + L S V KP+ G
Sbjct: 124 VAMDKITTKRVLESAGIPQVPYVAVVEGDDVEEKIAA---IEATL---SYPVFTKPSNMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L+ A + + D RV+VE G +
Sbjct: 178 SSVGISKSENQTE-LRTALELAFK-YDSRVLVE-----------------QGVNAR---- 214
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ ++R
Sbjct: 215 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMAIPAQLDPEVVKTMRT 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G AR D ++ T+ G I ++N + G Q S
Sbjct: 271 NAEKAFRAIGGLGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G ++++++ ++
Sbjct: 314 YPLLWDNMGLNYTDLITKLV 333
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 134/347 (38%), Gaps = 78/347 (22%)
Query: 616 DELPMRHSINEWIK------LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
DE M + +W K + KE A VF +HG +GEDG++Q LE +PY G G++
Sbjct: 62 DEKLMTNETVDWSKKVAPSAIYKEG-AVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGIL 120
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
AS MDK+ T L G+ + + D ++ I I L+ + K
Sbjct: 121 ASSVAMDKITTKRVLES---AGIPQVPYVAVVEGDDVEEKIAAIEATLSYP-----VFTK 172
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
P+ G S G+++ +E+ T ALE L F
Sbjct: 173 PSNMGSSVGISK---SENQTELRTALE---------------------------LAF--- 199
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG----D 845
+ D + Q N EI VG++G + S +P VK+ D
Sbjct: 200 -KYDSRVLVEQGVNAR-------------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYD 244
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
++ K L P M T A E A+ G +R D F D G
Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNA--------EKAFRAIGGLGLARCD-FFYTDKG 295
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
E+ + E+NT+PG T + ++ L + + K+++LG E F
Sbjct: 296 EIFLNELNTMPGFTQWS--MYPLLWDNMGLNYTDLITKLVELGKEVF 340
>gi|167614186|gb|ABZ89692.1| D-alanine--D-alanine ligase [Buchnera aphidicola]
Length = 305
Score = 86.7 bits (213), Expect = 6e-14, Method: Composition-based stats.
Identities = 90/378 (23%), Positives = 157/378 (41%), Gaps = 83/378 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG S+ER IS+ S ++L+ + + LNAY + +
Sbjct: 3 KIAVLLGGNSSERQISIKSGYAILESL-----------LRSGLNAYPVDTR--------- 42
Query: 139 FDFKLESLA-QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DF + L QGF D + +HG+ GEDG IQ VLE N+P+ G+G
Sbjct: 43 -DFPIIQLKKQGF--------------DSAYIALHGKGGEDGSIQGVLEYLNIPYTGSGI 87
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ + DK+ L +P L+ ++++ + + K+ VV+KP
Sbjct: 88 MSSAISLDKWRTKLLWKSSSLPVLPDVYLKKKDISQYTYPS--ILKKILQLKFPVVIKPN 145
Query: 258 RAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
+GSSIG+T+ + +IDS+ A +++E F+E G E+T +L+
Sbjct: 146 NSGSSIGITIVHYQDLLIDSINAAF-----NYSSDIIIEKFIE-GREYTVSILNKK---- 195
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
+LP V + K+ ++YR KY+ + Y P ++ A
Sbjct: 196 -----ILP---------PVKIITKNHFYDYRAKYIES-STEYLCPSELHHQKEKELKNIA 240
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
++ LG RID V ++ K+ W ++N I GM S +
Sbjct: 241 ETAWRTLGCKGCGRID---------VILDNKNKF----W----LLEVNTIPGMTYRSLVP 283
Query: 435 QQASKVGFSHSNILRTII 452
A +G S ++ I+
Sbjct: 284 ISAKSIGISFDELVLKIL 301
Score = 62.8 bits (151), Expect = 8e-07, Method: Composition-based stats.
Identities = 82/321 (25%), Positives = 133/321 (41%), Gaps = 75/321 (23%)
Query: 610 TGFDIADELPMRHSINEW---------IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEG 660
+G+ I + L +R +N + I+L K+ + +IA+HG GEDG++Q +LE
Sbjct: 21 SGYAILESL-LRSGLNAYPVDTRDFPIIQLKKQGFDSAYIALHGKGGEDGSIQGVLEYLN 79
Query: 661 VPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR-RKEDLLKTPIVDIWHELTS 719
+PYTG G+M+S +DK T L L L + DV +K+D+ + I L
Sbjct: 80 IPYTGSGIMSSAISLDKWRTKL----LWKSSSLPVLPDVYLKKKDISQYTYPSI---LKK 132
Query: 720 KLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPN 778
LQ K + +KP G S G+ + +DL + +S + A N
Sbjct: 133 ILQLKFPVVIKPNNSGSSIGIT-IVHYQDLLI--------------DSINAAF------N 171
Query: 779 PPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 838
+I+I E F+E E TV ++ K ++P V
Sbjct: 172 YSSDIII-EKFIEGR-------------------------EYTVSILNK-----KILPPV 200
Query: 839 TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA 898
+ K+ + L P S + + + K E L +G RID
Sbjct: 201 KIITKNHFYDYRAKYIESSTEYLCP---SELHHQKEKELKNIAETAWRTLGCKGCGRIDV 257
Query: 899 FVNVDNGEVLIIEVNTVPGMT 919
++ N + ++EVNT+PGMT
Sbjct: 258 ILDNKN-KFWLLEVNTIPGMT 277
>gi|417941320|ref|ZP_12584607.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK313]
gi|343388613|gb|EGV01199.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK313]
Length = 347
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 172/403 (42%), Gaps = 75/403 (18%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + +G + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWGKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V S+++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-SKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G + ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEVFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHL 472
S +G S+ ++ ++ A S+N +HL
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKE------SFNKHEAHL 346
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 130/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTSKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GEV + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEVFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|190359179|sp|Q031X8.2|DDL_LACLS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
Length = 349
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 165/382 (43%), Gaps = 52/382 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + +V+ Y+I + Q +++TPA+ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGE---FIKTQEFTDTPAEEEK 64
Query: 142 KL-ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
L LA+ + +S A + +VFP +HG GEDG IQ LE + +VG +
Sbjct: 65 LLTNDLAESYPKISPAA--IYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSA 122
Query: 201 RQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
DK A G VP ++ ++ N++E++ V P V VKP G
Sbjct: 123 SSTMDKLLAKHVFEAVGVPQVP-YVAAFADENQAEIAQEVVEKLEFP----VFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
SS+G++ +D L + + E D+RVV+E ++ E VL G+ D
Sbjct: 178 SSVGIS----KVDDLADLQPALSEAYKYDNRVVIEQGVD-AREIECAVL--GNNSDVSAT 230
Query: 319 VLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
LP EV KD ++Y KY+ ++ P + + I+E A
Sbjct: 231 --LPGEV-----------VKDVGFYDYNSKYI-DNKIQMDIPAKVSADLAQKIQEYAKKA 276
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
++ + +R D +F+ T+ G + ++N I G Q S
Sbjct: 277 YKAVNGAGLSRCD-FFV----------------TKDGNVYLNEVNAIPGFTQWSMYPLLW 319
Query: 438 SKVGFSHSNILRTIIGHACSRF 459
+G S+S+++ ++ A F
Sbjct: 320 ENMGLSYSDLIEKLVDLAKETF 341
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 125/320 (39%), Gaps = 62/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE + Y GP ++++ + MDK+ LA + +GV
Sbjct: 84 EKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMDKL---LAKHVFEAVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
V +I E+ KL+ VKPA G S G++++ +DL
Sbjct: 141 ----PQVPYVAAFADENQAEIAQEVVEKLEFPVF-VKPANMGSSVGISKV---DDLADLQ 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
AL E K +R++ +
Sbjct: 193 PALSEAY--------------------------------------------KYDNRVVIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI V+G + + +P VK+ G K+ I + P + +S +
Sbjct: 209 QGVDAREIECAVLGNNSDVSATLPGEVVKDVG-FYDYNSKYIDNK-IQMDIP--AKVSAD 264
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
K ++ + A+ G SR D FV D G V + EVN +PG T + ++ L E
Sbjct: 265 LAQKIQEYAKKAYKAVNGAGLSRCDFFVTKD-GNVYLNEVNAIPGFTQWS--MYPLLWEN 321
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K++DL E F
Sbjct: 322 MGLSYSDLIEKLVDLAKETF 341
>gi|222872735|gb|EEF09866.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 146/377 (38%), Gaps = 77/377 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S VL + + ++A+A PA+
Sbjct: 15 KVAVLLGGRSAEREVSLMSGTGVLKAL-----------LSHGVDAHAFD--------PAE 55
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D E +GF D F +HGR+GEDG +Q LE +P+ G G
Sbjct: 56 RDLG-ELKKEGF--------------DRCFIALHGRYGEDGTVQGALELLGIPYTGPGVM 100
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK +G T P + L S E+ + L ++VKP+R
Sbjct: 101 ASSIAMDKIMTKRIWRFEGLPT-PDWRLVAS-AGETRAA-------LQALGAPMIVKPSR 151
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS+IG+T + + ++A ++ D V+ E F+E G E T VL G G PV
Sbjct: 152 EGSTIGLTKVW-TAEECEQAY-VLASRYDPEVLCEEFIE-GDETTCPVLGTGEGAHALPV 208
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+ + + ++Y+ KY T YH P P IR F
Sbjct: 209 --------------IRIVAPEGNYDYQNKYF-TDDTKYHCPSGLPAEEEAEIRRIVVRAF 253
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG ++R D S F +IN GM S + A
Sbjct: 254 RTLGCRGWSRADIMIRASDRKPF----------------LLEINTSPGMTGHSLVPMSAR 297
Query: 439 KVGFSHSNILRTIIGHA 455
+G S+ N+ I+ A
Sbjct: 298 AIGVSYENLCLGILASA 314
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 124/298 (41%), Gaps = 77/298 (25%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L KE FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELKKEGFDRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 111
Query: 689 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 743
K + R E L TP +V E + LQ + VKP+R+G + G+ ++
Sbjct: 112 --------KRIWRFEG-LPTPDWRLVASAGETRAALQALGAPMIVKPSREGSTIGLTKVW 162
Query: 744 CAEDL-TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 802
AE+ YV A SR PE+L E F+E D
Sbjct: 163 TAEECEQAYVLA-------------SRYD---------PEVLC-EEFIEGD--------- 190
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
E T V+G H+L V G+ + F T +
Sbjct: 191 ----------------ETTCPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHC- 233
Query: 863 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
P+ + + E + +RI + A L G+SR D + + + ++E+NT PGMT
Sbjct: 234 --PSGLPAEEEAE--IRRIVVRAFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMT 287
>gi|123969037|ref|YP_001009895.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. AS9601]
gi|166198501|sp|A2BSM7.1|DDL_PROMS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|123199147|gb|ABM70788.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. AS9601]
Length = 355
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 147/342 (42%), Gaps = 44/342 (12%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLD----HIQGDDLLVRCYYIDRNLNAYAISSA 129
GG+ +GLI GG S E +S++SA++V I + +R +YI++ + S+
Sbjct: 3 GGKKKCIGLIFGGNSNEHEVSISSAKTVFQAFKSEINKERFTIRAFYINKYGDWLDSDSS 62
Query: 130 QVY-------SNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQ 182
+ NT F E + F +F NVD+ FP +HG GEDG I
Sbjct: 63 EKILIDESKNKNTTKKQIFNQEKI--NFLDGVDFQ-----NVDVWFPLLHGINGEDGSIH 115
Query: 183 EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
+L P VG G DK + S V + Q ++N+ E+ N +
Sbjct: 116 GLLRFTKKPLVGCGIIGSALGMDKILMKIIFSNLKIPQVNYLVFQNQDLNDEEVKNKLIH 175
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGG 299
L + V VKP+ +GSS+G++ +I +L+KA+ GID +++E LE
Sbjct: 176 EILKKLNFPVFVKPSNSGSSLGISKVINKSEIIPALEKAR-----GIDPSILIEEGLE-- 228
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
V ++ G + LL +E+ +V K ++Y KY ++ P
Sbjct: 229 ------VREIECGIIGNS-KLLTSEIG-------EVNYKSDWYDYNSKYHSNNKII--IP 272
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVF 401
+ I+E A + L + FAR+D + SS +F
Sbjct: 273 AEIDSKISKEIKEIAIKSCRALNIFGFARVDFFLEKSSNKIF 314
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 66/297 (22%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
+N F +HG GEDG++ LL P G G++ S MDK+ + ++L +
Sbjct: 95 QNVDVWFPLLHGINGEDGSIHGLLRFTKKPLVGCGIIGSALGMDKILMKII---FSNLKI 151
Query: 693 LTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+N V + +DL + + + HE+ KL VKP+ G S G++++ ++
Sbjct: 152 PQVNYLVFQNQDLNDEEVKNKLIHEILKKLNFPVF-VKPSNSGSSLGISKVINKSEI--- 207
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
+ ALE +A G+ P ILI E
Sbjct: 208 IPALE------------KARGI------DPSILIEEGL---------------------- 227
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
EI G+IG + S + V K D K+ I + S +S
Sbjct: 228 ----EVREIECGIIGNSKLLTSEIGEVNYK--SDWYDYNSKYHSNNKIIIPAEIDSKISK 281
Query: 872 E----ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
E A+ C+ AL + GF+R+D F+ + ++ + E+NT+PG T +++
Sbjct: 282 EIKEIAIKSCR--------ALNIFGFARVDFFLEKSSNKIFLNEINTIPGFTKNSMF 330
>gi|340789121|ref|YP_004754586.1| D-alanine-D-alanine ligase B [Collimonas fungivorans Ter331]
gi|340554388|gb|AEK63763.1| D-alanine-D-alanine ligase B, affects cell division [Collimonas
fungivorans Ter331]
Length = 336
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 155/391 (39%), Gaps = 75/391 (19%)
Query: 66 QTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYA 125
+TM+K+ G + +VG++ GG SAER +S+ S VL + + + +D +L
Sbjct: 7 ETMSKKKTGHQFGKVGVLFGGRSAEREVSIMSGNGVLKAL-------KSHGVDAHL---- 55
Query: 126 ISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
FD + SLA E A D VF +HGR+GEDG +Q L
Sbjct: 56 -------------FDTRERSLA----------ELAAEKFDRVFIALHGRYGEDGTLQGAL 92
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
E+ +P+ G G A DK G T +L EL V + L
Sbjct: 93 EQLGIPYTGPGVMASAIGMDKVMTKRIWQSMGLPTPRFIVLDSHSATREELRQ--VPDVL 150
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL-EGIDDRVVVELFLEGGSEFTA 304
+++K GS+IG++ G D ++G L D++V+ E F+ G E T
Sbjct: 151 ---GLPLMLKAPHEGSTIGISKVVGYSD---MSEGFALCAKFDEKVLAEEFV-AGRELTV 203
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G P+ V++R + ++Y+ KY T Y P
Sbjct: 204 PVLGAGRRARTLPI--------------VEIRAPEGNYDYQHKYF-TDDTKYLCPAPLDE 248
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ I+ A F LG +AR+D F+ + SS Y +IN
Sbjct: 249 ALTQRIQALAVQAFNALGCEGWARVD--FM-----LRSSDNEPY---------LLEINTS 292
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
GM S + A G S+ ++ I+ A
Sbjct: 293 PGMTSHSLVPMAAKADGVSYEDLCVEILKSA 323
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 125/302 (41%), Gaps = 71/302 (23%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH-- 686
+LA E VFIA+HG GEDGTLQ LE G+PYTGPGVMAS MDKV T
Sbjct: 65 ELAAEKFDRVFIALHGRYGEDGTLQGALEQLGIPYTGPGVMASAIGMDKVMTKRIWQSMG 124
Query: 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
L + ++ +E+L + P V L +K +G + G++++
Sbjct: 125 LPTPRFIVLDSHSATREELRQVPDV----------LGLPLMLKAPHEGSTIGISKVVGYS 174
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806
D++ + C F E ++ E FV E
Sbjct: 175 DMS---EGFALC------AKFD-------------EKVLAEEFVAGRE------------ 200
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
+TV V+G G +P V ++ + K+ L P P
Sbjct: 201 -------------LTVPVLG-AGRRARTLPIVEIRAPEGNYDYQHKYFTDDTKYLCPAPL 246
Query: 867 SIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
EAL QRI+ +A NAL EG++R+D + + E ++E+NT PGMT +
Sbjct: 247 D----EAL---TQRIQALAVQAFNALGCEGWARVDFMLRSSDNEPYLLEINTSPGMTSHS 299
Query: 923 VL 924
++
Sbjct: 300 LV 301
>gi|392429054|ref|YP_006470065.1| D-Ala-D-Ala ligase [Streptococcus intermedius JTH08]
gi|419776357|ref|ZP_14302279.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
intermedius SK54]
gi|383845768|gb|EID83168.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
intermedius SK54]
gi|391758200|dbj|BAM23817.1| D-Ala-D-Ala ligase [Streptococcus intermedius JTH08]
Length = 350
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 161/376 (42%), Gaps = 49/376 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ L+ GG SAER +S+ SA SV+ I D V+ Y+I + A Q +S+ PAD
Sbjct: 7 QIILLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQ---AGDFIKTQEFSSKPAD 63
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D KL + S + +VFP +HG GEDG IQ LE +P+VG
Sbjct: 64 -DEKLMTNDTVIESQKMKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNIL 122
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKP 256
+ A DK ++ G VP +++G +V E +++ N + V KP
Sbjct: 123 SSSIAMDKITTKRVLASAGIPQVPYVAVVEGEDVEEK-------IAEVEVNLTYPVFTKP 175
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GSS+G++ + D L A + + D RV++E A ++VG +
Sbjct: 176 SNMGSSVGISKSENK-DELCSALKLAFK-YDSRVLIE------QGVNAREIEVGLFGNEG 227
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV DV A ++Y KY+ ++ P + VI ++ + A
Sbjct: 228 AKSSLPGEV------VKDV----AFYDYEAKYI-DNKITMDIPAKLSEDVIATMCDYAEK 276
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F +G +R D ++ T G I ++N + G Q S
Sbjct: 277 AFHAIGGVGLSRCDFFY-----------------TNKGEIFLNELNTMPGFTQWSMYPLL 319
Query: 437 ASKVGFSHSNILRTII 452
+G S+S+++ ++
Sbjct: 320 WENMGLSYSDLIEQLV 335
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 113/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA G+
Sbjct: 86 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSIAMDKITTKRV---LASAGI 142
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + ++ I ++ LT + KP+ G S G+++ +E+
Sbjct: 143 PQVPYVAVVEGEDVEEKIAEVEVNLTY-----PVFTKPSNMGSSVGISK---SEN----- 189
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
DE+ + + K R++ +
Sbjct: 190 ---------------------------------------KDELCSALKLAFKYDSRVLIE 210
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG+ G G+ SL P VK+ E K+ I + P +S +
Sbjct: 211 QGVNAREIEVGLFGNEGAKSSL-PGEVVKDVA-FYDYEAKYIDNK-ITMDIPAK--LSED 265
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ E +A+ G SR D F + GE+ + E+NT+PG T
Sbjct: 266 VIATMCDYAEKAFHAIGGVGLSRCD-FFYTNKGEIFLNELNTMPGFT 311
>gi|337281645|ref|YP_004621116.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 15912]
gi|335369238|gb|AEH55188.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 15912]
Length = 348
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 160/381 (41%), Gaps = 65/381 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I V+ Y+I ++ + Q + PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGD---FIQTQAFEEKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VG G A
Sbjct: 64 KLMTNDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN-SGKVVVKPTRA 259
A DK + G VP +++G ++ E ++ N S V KP+
Sbjct: 124 VAMDKITTKRVLESAGIPQVPYVAVVEGDDLEEK-------IAAIEANLSYPVFTKPSNM 176
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSS+G++ + + L+ A + + D RV+VE G +
Sbjct: 177 GSSVGISKSENQTE-LRTALELAFK-YDSRVLVE-----------------QGVNAR--- 214
Query: 320 LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ ++R
Sbjct: 215 ----EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMAIPAQLDPEVVKTMR 269
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A F+ +G AR D ++ T+ G I ++N + G Q S
Sbjct: 270 TNAEKAFRAIGGLGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWS 312
Query: 432 FLFQQASKVGFSHSNILRTII 452
+G ++++++ ++
Sbjct: 313 MYPLLWDNMGLNYTDLITKLV 333
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 134/347 (38%), Gaps = 78/347 (22%)
Query: 616 DELPMRHSINEWIK------LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
DE M + +W K + KE A VF +HG +GEDG++Q LE +PY G G++
Sbjct: 62 DEKLMTNDTVDWSKKVAPSAIYKEG-AVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGIL 120
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
AS MDK+ T L G+ + + D L+ I I L+ + K
Sbjct: 121 ASSVAMDKITTKRVLES---AGIPQVPYVAVVEGDDLEEKIAAIEANLSY-----PVFTK 172
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
P+ G S G+++ +E+ T ALE L F
Sbjct: 173 PSNMGSSVGISK---SENQTELRTALE---------------------------LAF--- 199
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG----D 845
+ D + Q N EI VG++G + S +P VK+ D
Sbjct: 200 -KYDSRVLVEQGVNAR-------------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYD 244
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
++ K L P M T A E A+ G +R D F D G
Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNA--------EKAFRAIGGLGLARCD-FFYTDKG 295
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
E+ + E+NT+PG T + ++ L + + K+++LG E F
Sbjct: 296 EIFLNELNTMPGFTQWS--MYPLLWDNMGLNYTDLITKLVELGKEVF 340
>gi|260565487|ref|ZP_05835971.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M]
gi|265991340|ref|ZP_06103897.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1]
gi|38257346|sp|Q8YHR9.2|DDLA_BRUME RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetaseA
gi|260151555|gb|EEW86649.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M]
gi|263002124|gb|EEZ14699.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1]
Length = 353
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 154/386 (39%), Gaps = 45/386 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSAQVYSN 134
+R+ ++ GG SAE +S+ SA +V++ + ++ R L + ++ A +
Sbjct: 6 MRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPS 65
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ A+ + A + A +DI+FP +HG GEDG +Q + + VP G
Sbjct: 66 SGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAG 125
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
G A DK A +++ G T S + EV + L+ G +
Sbjct: 126 CGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVP--------AFSALEQALGLPIF 177
Query: 254 VKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
+KP R GSS+GV D + G I DD+++ E F++ ++ D G
Sbjct: 178 IKPARQGSSVGVHKVVTEADYQAAMSDGFIY---DDKLLAEEFIQAREVECGVLEDEGGA 234
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ G + E ++Y KY+ P P V N IR
Sbjct: 235 L------------FVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRA 282
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG AR+D F +++ + I+ +IN I G S
Sbjct: 283 IAAKAFRVLGCDSMARVD---------FFVTADRR--------IVLNEINTIPGFTDMSM 325
Query: 433 LFQQASKVGFSHSNILRTIIGHACSR 458
F+ + G S+ I+ ++ H +R
Sbjct: 326 YFKVMAVSGVSYPEIINRLVAHGLAR 351
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 108/294 (36%), Gaps = 82/294 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG +Q L + VP G G+ S +DK +A + + G+ T
Sbjct: 98 IFPVLHGLHGEDGAVQGLAQVARVPLAGCGIPGSANALDK---DIAKRLVNEAGLSTAKS 154
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+E+ V + L L +KPAR G S GV ++ D Y A+ +
Sbjct: 155 VTITREE------VPAFSALEQALGLPIF-IKPARQGSSVGVHKVVTEAD---YQAAMSD 204
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ + L+ E F++ E+
Sbjct: 205 GFIY-------------------DDKLLAEEFIQAREV---------------------- 223
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDIL--------SLEEKFQGGTGINLTPPPASIM 869
+CG + ++ V +G+I+ S + K+ G + P
Sbjct: 224 ---------ECGVLEDEGGALFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVP----- 269
Query: 870 STEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
E ++ + I IA L + +R+D FV D +++ E+NT+PG T
Sbjct: 270 -AELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTADR-RIVLNEINTIPGFT 321
>gi|333916653|ref|YP_004490385.1| D-alanine--D-alanine ligase [Delftia sp. Cs1-4]
gi|333746853|gb|AEF92030.1| D-alanine--D-alanine ligase [Delftia sp. Cs1-4]
Length = 326
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 145/377 (38%), Gaps = 77/377 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG SAER +SL S VL + + ++A+A PA+
Sbjct: 15 RVAVLLGGRSAEREVSLMSGTGVLKAL-----------LSHGVDAHAFD--------PAE 55
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D E +GF D F +HGR+GEDG +Q LE +P+ G G
Sbjct: 56 RDLG-ELKKEGF--------------DRCFIALHGRYGEDGTVQGALELLGIPYTGPGVM 100
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK +G T P + L S E+ + L ++VKP+R
Sbjct: 101 ASSIAMDKIMTKRIWRFEGLPT-PDWRLVAS-AGETRAA-------LQALGAPMIVKPSR 151
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS+IG+T + + ++A ++ D V+ E F+E G E T VL G G PV
Sbjct: 152 EGSTIGLTKVW-TAEECEQAY-VLASRYDPEVLCEEFIE-GDETTCPVLGTGEGAHALPV 208
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+ + + ++Y+ KY T YH P P IR F
Sbjct: 209 --------------IRIVAPEGNYDYQNKYF-TDDTKYHCPSGLPAEEEAEIRRIVVRAF 253
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG ++R D F +IN GM S + A
Sbjct: 254 RTLGCRGWSRADIMIRAGDRKPF----------------LLEINTSPGMTGHSLVPMSAR 297
Query: 439 KVGFSHSNILRTIIGHA 455
+G S+ N+ I+ A
Sbjct: 298 AIGVSYENLCLGILASA 314
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 124/298 (41%), Gaps = 77/298 (25%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L KE FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELKKEGFDRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 111
Query: 689 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 743
K + R E L TP +V E + LQ + VKP+R+G + G+ ++
Sbjct: 112 --------KRIWRFEG-LPTPDWRLVASAGETRAALQALGAPMIVKPSREGSTIGLTKVW 162
Query: 744 CAEDL-TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 802
AE+ YV A SR PE+L E F+E D
Sbjct: 163 TAEECEQAYVLA-------------SRYD---------PEVLC-EEFIEGD--------- 190
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
E T V+G H+L V G+ + F T +
Sbjct: 191 ----------------ETTCPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHC- 233
Query: 863 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
P+ + + E + +RI + A L G+SR D + + + ++E+NT PGMT
Sbjct: 234 --PSGLPAEEEAE--IRRIVVRAFRTLGCRGWSRADIMIRAGDRKPFLLEINTSPGMT 287
>gi|17987010|ref|NP_539644.1| D-alanyl-alanine synthetase A [Brucella melitensis bv. 1 str. 16M]
gi|17982662|gb|AAL51908.1| d-alanine--d-alanine ligase a [Brucella melitensis bv. 1 str. 16M]
Length = 366
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 154/386 (39%), Gaps = 45/386 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSAQVYSN 134
+R+ ++ GG SAE +S+ SA +V++ + ++ R L + ++ A +
Sbjct: 19 MRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPS 78
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ A+ + A + A +DI+FP +HG GEDG +Q + + VP G
Sbjct: 79 SGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAG 138
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
G A DK A +++ G T S + EV + L+ G +
Sbjct: 139 CGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVP--------AFSALEQALGLPIF 190
Query: 254 VKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
+KP R GSS+GV D + G I DD+++ E F++ ++ D G
Sbjct: 191 IKPARQGSSVGVHKVVTEADYQAAMSDGFIY---DDKLLAEEFIQAREVECGVLEDEGGA 247
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ G + E ++Y KY+ P P V N IR
Sbjct: 248 L------------FVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRA 295
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG AR+D F +++ + I+ +IN I G S
Sbjct: 296 IAAKAFRVLGCDSMARVD---------FFVTADRR--------IVLNEINTIPGFTDMSM 338
Query: 433 LFQQASKVGFSHSNILRTIIGHACSR 458
F+ + G S+ I+ ++ H +R
Sbjct: 339 YFKVMAVSGVSYPEIINRLVAHGLAR 364
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 108/294 (36%), Gaps = 82/294 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG +Q L + VP G G+ S +DK +A + + G+ T
Sbjct: 111 IFPVLHGLHGEDGAVQGLAQVARVPLAGCGIPGSANALDK---DIAKRLVNEAGLSTAKS 167
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+E+ V + L L +KPAR G S GV ++ D Y A+ +
Sbjct: 168 VTITREE------VPAFSALEQALGLPIF-IKPARQGSSVGVHKVVTEAD---YQAAMSD 217
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ + L+ E F++ E+
Sbjct: 218 GFIY-------------------DDKLLAEEFIQAREV---------------------- 236
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDIL--------SLEEKFQGGTGINLTPPPASIM 869
+CG + ++ V +G+I+ S + K+ G + P
Sbjct: 237 ---------ECGVLEDEGGALFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVP----- 282
Query: 870 STEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
E ++ + I IA L + +R+D FV D +++ E+NT+PG T
Sbjct: 283 -AELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTADR-RIVLNEINTIPGFT 334
>gi|410667660|ref|YP_006920031.1| D-alanine--D-alanine ligase [Thermacetogenium phaeum DSM 12270]
gi|409105407|gb|AFV11532.1| D-alanine--D-alanine ligase Ddl [Thermacetogenium phaeum DSM 12270]
Length = 322
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 157/384 (40%), Gaps = 75/384 (19%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS 133
G + +V ++ GG S ER ISL + R R +A A +V
Sbjct: 3 GKKPRKVVVLMGGRSPEREISLKTGR-------------------RISSALAEVGYKVLD 43
Query: 134 NTP-ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPF 192
P DF SL++F D+VF +HGR+GEDG IQ +LE P+
Sbjct: 44 VDPKGDF----------IKSLNDF------RPDVVFIALHGRYGEDGTIQGLLEVLGYPY 87
Query: 193 VGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-K 251
G+G A DK A + +G T P ++ E E + + ++L G
Sbjct: 88 TGSGVLASALCMDKVMAKKVLLYEGISTPPFRIITAGECQERQRTE--TADRLIEELGLP 145
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+VVKP+R GS+IGV+VA + L+KA D V E F++ G E TA ++
Sbjct: 146 LVVKPSRQGSTIGVSVARKA-EELEKAITDAFR-YDQTVFAEKFID-GVEVTASIIGTK- 201
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
+P VL +++ ++Y KY P + P R P V +
Sbjct: 202 ----NPRVL----------PLLEIVPATGFYDYTAKYSPGMS-QHIIPARIPQDVAERVE 246
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
E A ++ LG FAR+D + +T + ++N I GM +TS
Sbjct: 247 ELALRSYRALGCRQFARVD--------FMIDREDTPF---------VLEVNTIPGMTETS 289
Query: 432 FLFQQASKVGFSHSNILRTIIGHA 455
L A G + + ++ + A
Sbjct: 290 LLPDSAKAAGITFAELVSLFVEEA 313
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 126/295 (42%), Gaps = 65/295 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HG GEDGT+Q LLE G PYTG GV+AS CMDKV +A L G+ T
Sbjct: 62 VFIALHGRYGEDGTIQGLLEVLGYPYTGSGVLASALCMDKV---MAKKVLLYEGISTPPF 118
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ + + + L +L L VKP+R G + GV+ AE+L KA+ +
Sbjct: 119 RIITAGECQERQRTETADRLIEELGLP-LVVKPSRQGSTIGVSVARKAEELE---KAITD 174
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
D+ +F+ + +
Sbjct: 175 AF-------------------------------RYDQTVFAEKFID-------------G 190
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
VE+T +IG ++P + + + K+ G ++ PA I A
Sbjct: 191 VEVTASIIGTKNP--RVLPLLEIVPATGFYDYTAKYSPGMSQHII--PARIPQDVA---- 242
Query: 878 KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+R+E +A AL F+R+D ++ ++ ++EVNT+PGMT +++L A
Sbjct: 243 -ERVEELALRSYRALGCRQFARVDFMIDREDTP-FVLEVNTIPGMTETSLLPDSA 295
>gi|309805808|ref|ZP_07699845.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
LactinV 09V1-c]
gi|308164928|gb|EFO67174.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
LactinV 09V1-c]
Length = 360
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 164/401 (40%), Gaps = 71/401 (17%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ +RVGLI GG S+E +S+ S R++ I + V +I N ++S
Sbjct: 3 KKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWI---TNTGFLASDADSRKV 59
Query: 136 PADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D +++E+ ++S E +D+ FP +HG GEDG +Q +L + PFVG
Sbjct: 60 LEDPSYQIEN-PHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
A DK + + G +I++ F + ++ +LS +V+ KL +
Sbjct: 119 DDVLAAAITMDKELNKIMAQRAGVPVADWISIKRF--EYNDAKNEKLSYDYVSQKLGTD- 175
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVL 307
+ VKP GSS+G++ + S K + E DD+V+VE ++G
Sbjct: 176 --LFVKPANQGSSVGIS----HVTSASDYKAALAEAFKYDDKVLVEETIKG--------- 220
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVD---------VREKDAIFNYRRKYLPTQQVAYHT 358
TEVE G+ D + + ++Y KY
Sbjct: 221 ---------------TEVETAVLGNDDAIVSGVGQITNAQGSWYSYENKYNDNSTSKLQI 265
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P P +I ++R A ++ AR+D SS+ K ++F
Sbjct: 266 PAALPSEIIETVRRQALKVYHATECSGLARVDSML---------SSDNK--------VIF 308
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G S + +VG S++ ++ ++ +A R+
Sbjct: 309 NELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYALDRY 349
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 129/319 (40%), Gaps = 66/319 (20%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LAD-LGVL 693
F VHG +GEDG LQ LL P+ G V+A+ MDK + +AD + +
Sbjct: 92 FPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAITMDKELNKIMAQRAGVPVADWISIK 151
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
+ + E L ++ S+ L VKPA G S G++ + A D Y
Sbjct: 152 RFEYNDAKNEKLS--------YDYVSQKLGTDLFVKPANQGSSVGISHVTSASD---YKA 200
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E K D+++ +
Sbjct: 201 ALAEAF--------------------------------------------KYDDKVLVEE 216
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
+ E+ V+G ++ S + +T G S E K+ + L P A + +E
Sbjct: 217 TIKGTEVETAVLGNDDAIVSGVGQIT-NAQGSWYSYENKYNDNSTSKLQIPAA--LPSEI 273
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
++ +++ + +A + G +R+D+ ++ DN +V+ E+N++PG T + ++ L EQ
Sbjct: 274 IETVRRQALKVYHATECSGLARVDSMLSSDN-KVIFNELNSLPGFT--NISMYPKLFEQV 330
Query: 934 PMYPHQFFRKVLDLGSERF 952
+ + K+L+ +R+
Sbjct: 331 GISYTELITKLLNYALDRY 349
>gi|145219530|ref|YP_001130239.1| D-alanyl-alanine synthetase A [Chlorobium phaeovibrioides DSM 265]
gi|229485976|sp|A4SE28.1|DDL_PROVI RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|145205694|gb|ABP36737.1| D-alanine--D-alanine ligase [Chlorobium phaeovibrioides DSM 265]
Length = 361
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 166/403 (41%), Gaps = 67/403 (16%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYA--ISS----- 128
+ + V L+ GG SAE IS+ SA+SV HI D V YI RN Y+ I+S
Sbjct: 2 KQVTVALLFGGRSAEHEISIISAQSVARHINPDHYRVVPIYITRNGRWYSEGIASSILEL 61
Query: 129 ---AQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
A + + A KL+ + G F+ A +DI FP +HG +GEDG IQ L
Sbjct: 62 DIAALIRKSGTAAASLKLQEMVLASGQ-QPFSFTFA-GIDIAFPILHGSYGEDGRIQGFL 119
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGS-EVNESELSNWFVTN 243
+ +P+ G G A DK + L +S+ G P +L G E + ++ +
Sbjct: 120 DTVAIPYTGCGVTASALTMDKALSKLCVSEAGIAVAPGVTVLAGDWEKSPEQILSSIPET 179
Query: 244 KLDPNSGKVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
+ P V VKP GSS+G V+V + ++L A +D +V++E + G
Sbjct: 180 LIYP----VFVKPAHLGSSVGISKVSVQGELPEALAHAC-----NLDTKVLIEQAMH-GK 229
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL + P+ E+E GS ++Y KY+ + P
Sbjct: 230 EIEVAVLG-----NNDPIASACGEIE---PGS-------DFYDYDDKYIHNTAKLF-IPA 273
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R P + ++ A ++ LG AR+D +F+ + G ++F +
Sbjct: 274 RLPEELSRRVQADALTAYRALGCRGMARVD-FFVDEKS---------------GQVVFNE 317
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463
IN I G S Q G + + C R LA
Sbjct: 318 INTIPGFTDISMYPQLMEAAGIAFPEL--------CDRLLQLA 352
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 108/285 (37%), Gaps = 65/285 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL---GVLTI 695
F +HG GEDG +Q L+ +PYTG GV AS MDK + L ++ GV +
Sbjct: 102 FPILHGSYGEDGRIQGFLDTVAIPYTGCGVTASALTMDKALSKLCVSEAGIAVAPGVTVL 161
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
D + + + + I + + VKPA G S G++++ +L
Sbjct: 162 AGDWEKSPEQILSSIPETL--------IYPVFVKPAHLGSSVGISKVSVQGEL------- 206
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
P + + A + D + Q+ +
Sbjct: 207 --------PEALAHACNL-------------------DTKVLIEQAMHGK---------- 229
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI V V+G + S ++ D ++K+ T P E L
Sbjct: 230 ---EIEVAVLGNNDPIASACGE--IEPGSDFYDYDDKYIHNTAKLFIPA----RLPEELS 280
Query: 876 KCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ Q L A AL G +R+D FV+ +G+V+ E+NT+PG T
Sbjct: 281 RRVQADALTAYRALGCRGMARVDFFVDEKSGQVVFNEINTIPGFT 325
>gi|406997636|gb|EKE15665.1| hypothetical protein ACD_11C00115G0005 [uncultured bacterium]
Length = 355
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 168/393 (42%), Gaps = 64/393 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT--- 135
R+ ++ GGPS E +SL SA V+ + D + I + + + Y N
Sbjct: 10 RIAVVFGGPSGEHEVSLKSASQVISALDKDKYEIIPMAITKTGHWLVGEDGEKYMNDNLG 69
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAA---NVDIVFPTIHGRFGEDGGIQEVLEKYNVPF 192
A + +E+ G++ E L VD+V P IHG FGEDG +Q LE + + +
Sbjct: 70 KAGREGGVEA-----GNIFEIRNKLPGIFPKVDLVLPIIHGTFGEDGKLQGALEMFGLSY 124
Query: 193 VGTGSRACRQAFDKYDASLEMSKQGF-ITVPSFLLQGSEVNESELSNWFVTNKLD-PNSG 250
+G A A +K + G I + +G + N + + KL+ P
Sbjct: 125 AFSGILASALAMNKRKTKIIAKAVGLKIAKDVVVAKGKKFNSEK-----IIAKLNFP--- 176
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE--GIDDRVVVELFLEGGSEFTAIVLD 308
+V+KP GSSIG ++A +S ++ K I + G + V++E F++ G E T V+
Sbjct: 177 -IVIKPVELGSSIGTSLA----NSEQELKKGIEDAFGYGEEVLLEQFVK-GRELTVTVMG 230
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVV 366
D P L E+ + + F+YR KY +++V P P V
Sbjct: 231 -----DKTPKALPVIEI---------IPKVSNWFDYRAKYEAGGSEEVC---PAEIPEEV 273
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
++ A +F+ +G D AR D ++S+++ G + F +IN I G
Sbjct: 274 RKIVQRYAVKVFRAIGCRDLARAD--------FIWSAND--------GKLYFLEINTIPG 317
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
M TS Q A+ G S L +I R+
Sbjct: 318 MTTTSLAPQAAAVAGMEFSVFLDKLIEGVIKRY 350
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 118/296 (39%), Gaps = 80/296 (27%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR 701
+HG GEDG LQ LE G+ Y G++AS M+K T + + L I KDV
Sbjct: 103 IHGTFGEDGKLQGALEMFGLSYAFSGILASALAMNKRKTKIIAKAVG----LKIAKDV-- 156
Query: 702 KEDLLKTPIVDIWHELTS-KLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+V + S K+ K + +KP G S G + ++L K +E+
Sbjct: 157 --------VVAKGKKFNSEKIIAKLNFPIVIKPVELGSSIGTSLANSEQELK---KGIED 205
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+G E ++ E FV KG
Sbjct: 206 AF----------GYG---------EEVLLEQFV---------------------KGR--- 222
Query: 818 VEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
E+TV V+G K + ++P V+ + K++ G + PA I E
Sbjct: 223 -ELTVTVMGDKTPKALPVIEIIPKVS-----NWFDYRAKYEAGGSEEVC--PAEI--PEE 272
Query: 874 LDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+ K QR + + A+ +R D + ++G++ +E+NT+PGMT +T L QA
Sbjct: 273 VRKIVQRYAVKVFRAIGCRDLARADFIWSANDGKLYFLEINTIPGMT-TTSLAPQA 327
>gi|322421359|ref|YP_004200582.1| D-alanine--D-alanine ligase [Geobacter sp. M18]
gi|320127746|gb|ADW15306.1| D-alanine/D-alanine ligase [Geobacter sp. M18]
Length = 305
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 93/378 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SLNS ++VL LVR Y V + P
Sbjct: 10 KIAVLMGGLSAEREVSLNSGKAVLAS------LVR--------QGYQAVGIDVGRDLP-- 53
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
AE V+ F +HGRFGEDG +Q +LE +P+ G+G
Sbjct: 54 ---------------QRLAEE---QVERAFIALHGRFGEDGSVQGLLELMAIPYTGSGVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK A + G P +L E E +L+N VVVKP+R
Sbjct: 96 ASALAIDKIAAKTMFAAAGLKLAPYQVLSRGE--ELKLANPL----------PVVVKPSR 143
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+GV+ ++ ++ + + E D +++E F++ G E +LD
Sbjct: 144 EGSSVGVS----IVREPQQMEKALAEAFRYDSEILIEAFID-GKEVQVGILDG------- 191
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSIREGAS 375
+ G++++ K+ ++Y KY T A H P R P V ++ +
Sbjct: 192 -----------RAMGAIEIVPKNEFYDYEAKY--TDGGAEHILPARLPEQVYQAVLKEGE 238
Query: 376 LLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
LG CD ++R+D FL E G ++N + GM S L
Sbjct: 239 KAHAALG-CDCYSRVD--FL---------------VNEAGECYLLEVNTLPGMTDLSLLP 280
Query: 435 QQASKVGFSHSNILRTII 452
+ A G +++ I+
Sbjct: 281 EIARGSGIDFDQLVQRIL 298
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 135/318 (42%), Gaps = 85/318 (26%)
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
G D+ +LP R LA+E FIA+HG GEDG++Q LLE +PYTG GV+
Sbjct: 44 VGIDVGRDLPQR--------LAEEQVERAFIALHGRFGEDGSVQGLLELMAIPYTGSGVL 95
Query: 670 ASKTCMDKVATSLALNHLADLGV-LTINKDVRRKEDL-LKTPIVDIWHELTSKLQCKTLC 727
AS +DK+A A A G+ L + + R E+L L P+ +
Sbjct: 96 ASALAIDKIA---AKTMFAAAGLKLAPYQVLSRGEELKLANPL--------------PVV 138
Query: 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 787
VKP+R+G S GV+ ++R P +A + E
Sbjct: 139 VKPSREGSSVGVS------------------IVR-EPQQMEKA--------------LAE 165
Query: 788 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDI 846
F EIL + K E+ VG++ G+ M ++ + +
Sbjct: 166 AFRYDSEILIEAFIDGK--------------EVQVGILDGRA------MGAIEIVPKNEF 205
Query: 847 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 906
E K+ G ++ P +A+ K ++ AL + +SR+D VN + GE
Sbjct: 206 YDYEAKYTDGGAEHILPARLPEQVYQAVLKEGEKAH---AALGCDCYSRVDFLVN-EAGE 261
Query: 907 VLIIEVNTVPGMTPSTVL 924
++EVNT+PGMT ++L
Sbjct: 262 CYLLEVNTLPGMTDLSLL 279
>gi|27378516|ref|NP_770045.1| D-alanyl-alanine synthetase A [Bradyrhizobium japonicum USDA 110]
gi|39931121|sp|Q89PS5.1|DDLB_BRAJA RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|27351664|dbj|BAC48670.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 110]
Length = 376
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 152/391 (38%), Gaps = 45/391 (11%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN- 134
R + VGL+ GG SAE +S SA ++L + D V I R+ +A S
Sbjct: 13 RKITVGLLFGGRSAEHEVSRASAANILRALNSDRYDVYLIGISRDGRWFACDSGNGAGTG 72
Query: 135 ----TPADFDFKLESLAQGFGSLSEF---AEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
T +D ++ + G G L A ++D+ FP +HG GEDG +Q LE
Sbjct: 73 STALTISDEAPEIGLVPGGRGRLVHCDGPTGSDAGSIDVAFPILHGPNGEDGTVQGALEL 132
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
+V FVG+ A DK + M G VP S E +
Sbjct: 133 ADVSFVGSSVTGSAVAMDKEVSKRLMRDAGLPVVPFLTTTASSRIE------YAAAVAAL 186
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ + VKP GSS+GV+ A + A + D +++VE L G E VL
Sbjct: 187 GTPDLFVKPANLGSSVGVSRARS--EEEFAASCALAFRYDRKILVEQALNGAREIECSVL 244
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
+ +G ++ G + + ++Y+ KY+ A H P P++
Sbjct: 245 EESTG-----------DIRASGLGEIVRASEHGFYSYQAKYIDADGAALHIPADLPLLQA 293
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++E A +F L AR+D F VF + N + G
Sbjct: 294 RRLQELAVEVFNVLCCEGMARVD--FFVQGDEVF----------------VNEANTLPGF 335
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+S + G S ++++ +I HA +R
Sbjct: 336 TSSSMYPKLWEASGLSQTDLMDKLIAHAFAR 366
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 106/293 (36%), Gaps = 71/293 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
F +HG GEDGT+Q LE V + G V S MDK ++K
Sbjct: 112 AFPILHGPNGEDGTVQGALELADVSFVGSSVTGSAVAMDK----------------EVSK 155
Query: 698 DVRRKEDLLKTPIVDI-------WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
+ R L P + + + L L VKPA G S GV+R E+
Sbjct: 156 RLMRDAGLPVVPFLTTTASSRIEYAAAVAALGTPDLFVKPANLGSSVGVSRARSEEEFAA 215
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810
C L + R +IL+ + EI S
Sbjct: 216 ------SCALAF---RYDR------------KILVEQALNGAREIECS------------ 242
Query: 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870
+E + G I G L V E G S + K+ G L PA +
Sbjct: 243 ------VLEESTGDIRASG----LGEIVRASEHG-FYSYQAKYIDADGAALH-IPADLPL 290
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
+A + +E+ N L EG +R+D FV D EV + E NT+PG T S++
Sbjct: 291 LQARRLQELAVEVF-NVLCCEGMARVDFFVQGD--EVFVNEANTLPGFTSSSM 340
>gi|419767026|ref|ZP_14293197.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK579]
gi|383353544|gb|EID31153.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK579]
Length = 347
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 167/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S P D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQNPEQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + +G + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWGKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V S+++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESTGIAQVPYVAIVEGDDVT-SKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ +++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKISMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---TGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTSKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I++ P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ISMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|448241115|ref|YP_007405168.1| D-alanine-D-alanine ligase A [Serratia marcescens WW4]
gi|445211479|gb|AGE17149.1| D-alanine-D-alanine ligase A [Serratia marcescens WW4]
Length = 367
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 162/402 (40%), Gaps = 55/402 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + I+ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GQWHINDASNYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAA-------NVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + + A +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALIALNRSNKNVALIPGQEKQQLIEAGSAGALGQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK + G P L + N + F +L
Sbjct: 123 ANMPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTL--TRANRA----GFTFEQLSE 176
Query: 248 NSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
G + VKP GSS+GV+ V + + + L D +V+VE +AI
Sbjct: 177 RLGLPLFVKPANQGSSVGVS---KVENRAEFDAAVALAFSFDHKVLVE---------SAI 224
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VG +C VL + + G + + DA ++Y KY+ Q P
Sbjct: 225 ---VGREIEC--AVLGNDDPQASVCGEIVL--SDAFYSYDTKYINEQGAQVVVPAAIAPE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V + IRE A F+ L AR+D + P + ++ +IN +
Sbjct: 278 VSDHIREVALKAFRALECFGLARVDVFLTPDN-----------------QVVINEINTLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
G S + + G S+ ++ +I A R + NS
Sbjct: 321 GFTNISMYPKLWAASGVSYQALITRLIELALERHQQDRALNS 362
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 112/292 (38%), Gaps = 78/292 (26%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK +
Sbjct: 101 VIFPIVHGTLGEDGSLQGLLRMANMPFVGAGVLGSAVSMDK----------------DVT 144
Query: 697 KDVRRKEDLLKTPIVDI---------WHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
K + R L P V + + +L+ +L L VKPA G S GV+++ +
Sbjct: 145 KRLLRDAGLAVAPFVTLTRANRAGFTFEQLSERLGL-PLFVKPANQGSSVGVSKVENRAE 203
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
V +FS H ++L S +
Sbjct: 204 FDAAVAL-----------AFSFDH----------------------KVLVESAIVGR--- 227
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
EI V+G S+ + + ++ S + K+ G + P A
Sbjct: 228 -----------EIECAVLGNDDPQASVCGEIVLSDA--FYSYDTKYINEQGAQVVVPAA- 273
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
++ E D ++ AL+ G +R+D F+ DN +V+I E+NT+PG T
Sbjct: 274 -IAPEVSDHIREVALKAFRALECFGLARVDVFLTPDN-QVVINEINTLPGFT 323
>gi|300783664|ref|YP_003763955.1| D-alanine--D-alanine ligase [Amycolatopsis mediterranei U32]
gi|384146900|ref|YP_005529716.1| D-alanyl-alanine synthetase A [Amycolatopsis mediterranei S699]
gi|399535549|ref|YP_006548210.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei S699]
gi|299793178|gb|ADJ43553.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
gi|340525054|gb|AEK40259.1| D-alanyl-alanine synthetase A [Amycolatopsis mediterranei S699]
gi|398316319|gb|AFO75266.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei S699]
Length = 364
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 168/398 (42%), Gaps = 52/398 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS--SAQVY--- 132
+RV ++ GG S+E IS SA SVL H+ + I R S SAQ+
Sbjct: 5 IRVAVVFGGRSSEHTISCLSAGSVLGHLDPERFEAVPVGITREGRWVLGSGDSAQLAVRG 64
Query: 133 SNTPADFDFKLESLA-----QGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLE 186
P+ D + LA QG ++ E L + VD+VFP +HG FGEDG IQ +LE
Sbjct: 65 RELPSVDDGQGLVLAGDPSSQGLVAVEAGRESELLSRVDVVFPVLHGAFGEDGTIQGLLE 124
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGF-ITVPSFLLQGSEVNESELSNWFVTNKL 245
+P+VG G A A DK A ++ +G + S L +G E T++
Sbjct: 125 LAGIPYVGPGVLASAAAMDKETAKKLLAAEGLPVGTFSALKRGQSTLEQ-------TDR- 176
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL-EGIDDRVVVELFLEGGSEFTA 304
+ V VKP+RAGSS+G++ V D I L D +V+VE + G E
Sbjct: 177 EKLGLPVFVKPSRAGSSVGISR---VADWAGLDAAIALARATDPKVLVEAAVV-GREVEC 232
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL+ G H LP E+ + + +++A +++ KYL P +
Sbjct: 233 GVLEFPDG---HVEASLPAEIRVLSE------DENAWYDFETKYL-GDDAELDIPAKLDD 282
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ +R A F+ L AR+D F + H ++ ++N +
Sbjct: 283 ALTEKLRAMAVEAFRALDCQGLARVD--FFVTEDH---------------QLIINEVNTM 325
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
G S + G + +L T++ A +R L
Sbjct: 326 PGFTTKSAYPKMWEVTGMDYPTLLTTLVETAIARGTGL 363
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE G+PY GPGV+AS MDK T+ L L V T +
Sbjct: 105 VFPVLHGAFGEDGTIQGLLELAGIPYVGPGVLASAAAMDK-ETAKKLLAAEGLPVGTFSA 163
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
R + L +T KL VKP+R G S G++R+
Sbjct: 164 LKRGQSTLEQTD--------REKLGLPVF-VKPSRAGSSVGISRVA 200
>gi|365127713|ref|ZP_09340172.1| D-alanine-D-alanine ligase [Subdoligranulum sp. 4_3_54A2FAA]
gi|363623918|gb|EHL75012.1| D-alanine-D-alanine ligase [Subdoligranulum sp. 4_3_54A2FAA]
Length = 347
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 147/350 (42%), Gaps = 51/350 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDRNLNAYAISS 128
++V ++ GG S E +SL SA +VL ++G R ++ L+A
Sbjct: 4 IKVAVLFGGQSTEHAVSLQSACAVLHAMKGTRFEAVPVGITREGRWFWYRGPLDAVGEGV 63
Query: 129 AQVYSNTPADF--DFKLESL-AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
+ P D + L QG GSL +D FP +HG+ GEDG +Q +L
Sbjct: 64 WEKEECAPVTLTPDASVHGLLVQGAGSL---------YLDAAFPVLHGKNGEDGTVQGLL 114
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
+P VG G A DK DA+ +++ + VP ++ + L+ T+ L
Sbjct: 115 ALAGIPCVGCGVLASALCMDK-DAAHRLARAAGVEVPPCVVLHAPPRPEVLAA--CTHGL 171
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFT 303
+ VKP AGSS GVT +++ + E D +V+VE + G E
Sbjct: 172 ---RYPLFVKPACAGSSFGVT----RVETPDALPAAVAEAFRHDGKVLVEQAVP-GFEVG 223
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY-LPTQQVAYHTPPRF 362
VL G V E+EL F+Y KY L T ++ H P R
Sbjct: 224 CAVLGAGEALTVGEV----DEIEL----------AHGFFDYTEKYTLETARI--HMPARL 267
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
+ + +RE A +++ L FAR+D ++ P VF+ T G TE
Sbjct: 268 SLAERDRVREAAKTVYRALCCTGFARVDLFYTPDGRIVFNEVNTIPGFTE 317
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG GEDGT+Q LL G+P G GV+AS CMDK A + LA + +
Sbjct: 97 FPVLHGKNGEDGTVQGLLALAGIPCVGCGVLASALCMDKDAA----HRLARAAGVEVPPC 152
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
V L P ++ T L+ L VKPA G S GV R+
Sbjct: 153 VV----LHAPPRPEVLAACTHGLR-YPLFVKPACAGSSFGVTRV 191
>gi|398876001|ref|ZP_10631161.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM67]
gi|398205293|gb|EJM92077.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM67]
Length = 364
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 161/406 (39%), Gaps = 81/406 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I GG SAE +SL SA++++D + ID+ + N P+
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSAKNIVDALDRSRFDPVLIGIDKQ--------GHWHLNDPS 55
Query: 138 DFDFKLE-----SLAQGFGSLSEF------------AEHLAANVDIVFPTIHGRFGEDGG 180
+F E +L Q L+ ++ L +VD++FP +HG GEDG
Sbjct: 56 NFLLNQENPALIALNQSNRELAVVPGKTRQQLVETSSQELLGHVDVIFPIVHGTLGEDGC 115
Query: 181 IQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
+Q +L ++PFVG+ GS C DK + + G P L + + +
Sbjct: 116 LQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFVTLTRATAKRTGFA 172
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFL 296
V KL + VKP GSS+GV+ V D + + L G D++V+VE +
Sbjct: 173 E--VRGKLGL---PLFVKPANQGSSVGVS---KVNDEAEYTAAVELALGFDEKVLVESAV 224
Query: 297 EGGSEFTAIVLD----VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
G E VL + SG C +V+ + ++Y KY+ Q
Sbjct: 225 S-GREIECAVLGNEDAIASG--CGEIVV-----------------RSGFYSYDSKYIDAQ 264
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
P IR A FQ LG AR+D + T+
Sbjct: 265 AAQVVVPADISTEASERIRALAVEAFQVLGCSGLARVDVFL-----------------TD 307
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G + S + G ++S ++ +I A +
Sbjct: 308 SGEVLINEINSLPGFTRISMYPKLWQATGMTYSELVSRLIELALEK 353
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 180/471 (38%), Gaps = 136/471 (28%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFDPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P + R Q+V + L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKT------RQQLVETSSQELLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 720
S CMDK I+K + R L TP V + + E+ K
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRATAKRTGFAEVRGK 177
Query: 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
L L VKPA G S GV+++ D Y A+E L F
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKV---NDEAEYTAAVELAL------GFD------------ 215
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
+++L S + + EI V+G ++ S + V
Sbjct: 216 ------------EKVLVESAVSGR--------------EIECAVLGNEDAIASGCGEIVV 249
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 900
+ S + K+ + P + +STEA ++ + L G +R+D F+
Sbjct: 250 RSG--FYSYDSKYIDAQAAQVVVP--ADISTEASERIRALAVEAFQVLGCSGLARVDVFL 305
Query: 901 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D+GEVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 306 T-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVSRLIELALEK 353
>gi|383934186|ref|ZP_09987628.1| D-alanine-D-alanine ligase [Rheinheimera nanhaiensis E407-8]
gi|383704642|dbj|GAB57719.1| D-alanine-D-alanine ligase [Rheinheimera nanhaiensis E407-8]
Length = 309
Score = 86.3 bits (212), Expect = 7e-14, Method: Composition-based stats.
Identities = 85/316 (26%), Positives = 132/316 (41%), Gaps = 90/316 (28%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P + S+ E LA+ VFI +HG GEDG++Q L+ G+PYTG GV+ S MDK+
Sbjct: 48 PKQQSLAE---LAQSGAQRVFIVLHGRGGEDGSMQGALQQLGLPYTGSGVLGSALAMDKI 104
Query: 679 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHE------LTSKLQCKTLCVKPAR 732
K + + + L P + H+ L + L K + VKPA
Sbjct: 105 RC----------------KYLFQAQQLPTAPFAVVHHDDTDFAALLASLGGKVM-VKPAN 147
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
+G S G++ AE+L VK
Sbjct: 148 EGSSIGMSAASTAEELQQAVK--------------------------------------- 168
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSL 849
Q+ N +++ L+ RW+ E TV ++ ++P V ++
Sbjct: 169 -------QALNYDSEILV----ERWINGREFTVAILNG-----QVLPIVEMRTPRAFYDY 212
Query: 850 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVL 908
E K+Q + L P P S T A+ QR L A NA+ G+ R+D ++ D G+
Sbjct: 213 EAKYQASSTEYLCPAPLSAEQTAAM----QRSALKAFNAVGASGWGRVDIMLDQD-GQHF 267
Query: 909 IIEVNTVPGMTPSTVL 924
++EVNTVPGMT +++
Sbjct: 268 LLEVNTVPGMTEKSLV 283
Score = 85.1 bits (209), Expect = 1e-13, Method: Composition-based stats.
Identities = 96/377 (25%), Positives = 152/377 (40%), Gaps = 81/377 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S +VL + D ++A+A
Sbjct: 10 KVAVMFGGLSAEREVSLRSGAAVLKALT-----------DAGVDAFA------------- 45
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD K +SLA E A+ A V IV +HGR GEDG +Q L++ +P+ G+G
Sbjct: 46 FDPKQQSLA-------ELAQSGAQRVFIV---LHGRGGEDGSMQGALQQLGLPYTGSGVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK Q T P ++ + + + L L GKV+VKP
Sbjct: 96 GSALAMDKIRCKYLFQAQQLPTAPFAVVHHDDTDFAAL--------LASLGGKVMVKPAN 147
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIG++ A + L++A L D ++VE ++ G EFT +L+ G
Sbjct: 148 EGSSIGMSAA-STAEELQQAVKQALN-YDSEILVERWIN-GREFTVAILN-GQ------- 196
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+LP V++R A ++Y KY Y P +++ A F
Sbjct: 197 -VLPI---------VEMRTPRAFYDYEAKY-QASSTEYLCPAPLSAEQTAAMQRSALKAF 245
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+G + R+D H ++N + GM + S + A
Sbjct: 246 NAVGASGWGRVDIMLDQDGQH-----------------FLLEVNTVPGMTEKSLVPMAAK 288
Query: 439 KVGFSHSNILRTIIGHA 455
G+S ++ I+G +
Sbjct: 289 AAGYSFQQLVVAILGQS 305
>gi|284034929|ref|YP_003384860.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
gi|283814222|gb|ADB36061.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
Length = 315
Score = 86.3 bits (212), Expect = 7e-14, Method: Composition-based stats.
Identities = 97/383 (25%), Positives = 154/383 (40%), Gaps = 76/383 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG S ER +SL S R V D ++ + V +D +L + N P D
Sbjct: 6 RVLVLAGGLSHERDVSLRSGRRVADALRSVGVEVEQRDVDASL-------VERLRNDPPD 58
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
VFP +HG GEDG +++VL+ Y VP+VG +
Sbjct: 59 ---------------------------AVFPVLHGVTGEDGALRQVLDLYGVPYVGADAA 91
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGS---EVNESELSNWFVTNKLDPNSGKVVVK 255
ACR AFDK AS + G + S +L E+ + L V P +VVK
Sbjct: 92 ACRTAFDKPVASTMVRSAGLRSPESVVLGHDTFRELGAAALMEAVVGQLGLP----LVVK 147
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P R GS++G ++ ID L A + ++E ++E G+E V+D G G
Sbjct: 148 PARGGSALGASIVR-TIDELPSAM-VNCYAYGPVALIERYVE-GTEVAVTVVDTGDGPWA 204
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P +V+++ ++Y +Y + P R V + + A
Sbjct: 205 LP--------------AVEIQPDSGFYDYEARY-TAGATQFVVPARLDAAVAAACAQAAV 249
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
+ LGL D +R D + ++ G F ++N+ GM +TS +
Sbjct: 250 TAHRALGLRDLSRSD---------LVVDAQ--------GVPWFLEVNVAPGMTETSLVPL 292
Query: 436 QASKVGFSHSNILRTIIGHACSR 458
A G + R ++ A +R
Sbjct: 293 AAEAAGIELGVLCRDLLATAAAR 315
Score = 47.4 bits (111), Expect = 0.037, Method: Composition-based stats.
Identities = 66/297 (22%), Positives = 111/297 (37%), Gaps = 58/297 (19%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHL 687
+L + VF +HG GEDG L+ +L+ GVPY G A +T DK VA+++ +
Sbjct: 51 RLRNDPPDAVFPVLHGVTGEDGALRQVLDLYGVPYVGADAAACRTAFDKPVASTM----V 106
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
G+ + V + + + + +L L VKPAR G + G + + ++
Sbjct: 107 RSAGLRSPESVVLGHDTFRELGAAALMEAVVGQLGLP-LVVKPARGGSALGASIVRTIDE 165
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
L A+ C P + + E +VE E+ + T
Sbjct: 166 LP---SAMVNCYAYGP-------------------VALIERYVEGTEVAVTVVDT----- 198
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
G+ W +P+V ++ E ++ G + P +
Sbjct: 199 -----GDGPWA----------------LPAVEIQPDSGFYDYEARYTAGATQFVVP---A 234
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ C Q AL L SR D V+ G +EVN PGMT ++++
Sbjct: 235 RLDAAVAAACAQAAVTAHRALGLRDLSRSDLVVDA-QGVPWFLEVNVAPGMTETSLV 290
>gi|260892987|ref|YP_003239084.1| D-alanine--D-alanine ligase [Ammonifex degensii KC4]
gi|260865128|gb|ACX52234.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4]
Length = 308
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 124/294 (42%), Gaps = 65/294 (22%)
Query: 628 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN-- 685
++L++ VF+A+HG GEDG++Q LLE G+PYTGPG++AS M+K+AT L
Sbjct: 46 LRLSEVKPDVVFLALHGKGGEDGSIQGLLEVMGLPYTGPGILASALAMNKIATKRYLRSA 105
Query: 686 HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745
L +T++K+ E W + + + + VK G S G+ +
Sbjct: 106 SLPTPDFITLDKEETHDE----------WLQRVKEFRPFPVVVKAPTQGSSLGMNIVRRE 155
Query: 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
E+L + AL E P +++ E F+E
Sbjct: 156 EEL---LPALAEAFRYDP-------------------VVLVEEFIEG------------- 180
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
VE+T V+G + ++P + + + E K+ G ++ PP
Sbjct: 181 ------------VEVTAAVLGNRKPV--VLPLIEIVADKGVYDYEAKYTPGKSQHIIPP- 225
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +K K+ L GFSRID V+ G I+EVNT+PG+T
Sbjct: 226 --RLPEPWQEKVKELALATYRWLDCRGFSRIDFMVD-HKGNPYILEVNTIPGLT 276
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 152/384 (39%), Gaps = 81/384 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RV ++CGG SAER +SL S +V +Q +R A I +
Sbjct: 1 MRVAVLCGGNSAEREVSLRSGEAVYRALQ-----------ERGWEAVKI-------DVGP 42
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D +L + D+VF +HG+ GEDG IQ +LE +P+ G G
Sbjct: 43 DIALRLSEVKP----------------DVVFLALHGKGGEDGSIQGLLEVMGLPYTGPGI 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A A +K A+ + + P F+ E E W K + VVVK
Sbjct: 87 LASALAMNKI-ATKRYLRSASLPTPDFITLDKEETHDE---WLQRVK-EFRPFPVVVKAP 141
Query: 258 RAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
GSS+G+ + ++ +L +A D V+VE F+E G E TA VL +
Sbjct: 142 TQGSSLGMNIVRREEELLPALAEAF-----RYDPVVLVEEFIE-GVEVTAAVLG-----N 190
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PVVL E+ V +K +++Y KY P + + PPR P ++E A
Sbjct: 191 RKPVVLPLIEI---------VADK-GVYDYEAKYTPGKS-QHIIPPRLPEPWQEKVKELA 239
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
++ L F+RID + G ++N I G+ + S
Sbjct: 240 LATYRWLDCRGFSRID-----------------FMVDHKGNPYILEVNTIPGLTEVSLFP 282
Query: 435 QQASKVGFSHSNILRTIIGHACSR 458
A G S ++ +I A R
Sbjct: 283 DAARAAGISFGELVERLIYLALGR 306
>gi|453062641|gb|EMF03631.1| D-alanine--D-alanine ligase [Serratia marcescens VGH107]
Length = 367
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 162/402 (40%), Gaps = 55/402 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + I+ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQ-GQWHINDASNYLLNAE 62
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAA-------NVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E + + A +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALIALNRSNKNVALIPGQEKQQLIEAGSAGALGQLDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK + G P L + N + F +L
Sbjct: 123 ANMPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTL--TRANRA----GFTFEQLSE 176
Query: 248 NSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
G + VKP GSS+GV+ V + + + L D +V+VE +AI
Sbjct: 177 RLGLPLFVKPANQGSSVGVS---KVENRAEFDAAVALAFSFDHKVLVE---------SAI 224
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VG +C VL + + G + + DA ++Y KY+ Q P
Sbjct: 225 ---VGREIEC--AVLGNDDPQASVCGEIVL--SDAFYSYDTKYINEQGAQVVVPAAIAPE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V + IRE A F+ L AR+D + P + ++ +IN +
Sbjct: 278 VSDHIREVALKAFRALECFGLARVDVFLTPGN-----------------QVVINEINTLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
G S + + G S+ ++ +I A R + NS
Sbjct: 321 GFTNISMYPKLWAASGVSYQALITRLIELALERHQQDRALNS 362
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 111/292 (38%), Gaps = 78/292 (26%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK +
Sbjct: 101 VIFPIVHGTLGEDGSLQGLLRMANMPFVGAGVLGSAVSMDK----------------DVT 144
Query: 697 KDVRRKEDLLKTPIVDI---------WHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
K + R L P V + + +L+ +L L VKPA G S GV+++ +
Sbjct: 145 KRLLRDAGLAVAPFVTLTRANRAGFTFEQLSERLGL-PLFVKPANQGSSVGVSKVENRAE 203
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
V +FS H ++L S +
Sbjct: 204 FDAAVAL-----------AFSFDH----------------------KVLVESAIVGR--- 227
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
EI V+G S+ + + ++ S + K+ G + P A
Sbjct: 228 -----------EIECAVLGNDDPQASVCGEIVLSDA--FYSYDTKYINEQGAQVVVPAA- 273
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
++ E D ++ AL+ G +R+D F+ N +V+I E+NT+PG T
Sbjct: 274 -IAPEVSDHIREVALKAFRALECFGLARVDVFLTPGN-QVVINEINTLPGFT 323
>gi|384417381|ref|YP_005626741.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353460295|gb|AEQ94574.1| D-alanine--D-alanine ligase A [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 367
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 100/405 (24%), Positives = 147/405 (36%), Gaps = 69/405 (17%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R +RVGLI GG SAE +SL SAR++LD + ID+ Q + N
Sbjct: 2 RTIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQ--------GQWHVND 53
Query: 136 PADF--------DFKLESLAQGFGSLSEFA---------EHLAANVDIVFPTIHGRFGED 178
P F L +G L E A +D+VFP +HG GED
Sbjct: 54 PDSFLLHADDPARIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGED 113
Query: 179 GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238
G +Q +L N+PFVG+G A DK A + G P +++
Sbjct: 114 GSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFDRHTAAHADVDT 173
Query: 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG 298
L + VKP GSS+GV+ A + D +V+VE +
Sbjct: 174 LIAQLGL-----PLFVKPANQGSSVGVSQVR--TADAFAAALALALAYDHKVLVEAAV-A 225
Query: 299 GSEFTAIVLD--VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
G E VL V C VV+ DA ++Y KY+
Sbjct: 226 GREIECAVLGNAVPHASVCGEVVV-----------------HDAFYSYATKYISEHGAEI 268
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P I++ A +Q LG AR+D VF ++ G I
Sbjct: 269 VIPADIDAQTQQRIQQIAVQAYQALGCAGMARVD---------VFLCAD--------GRI 311
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
+ ++N + G + S + G + ++ +I A R +
Sbjct: 312 VINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELALERHAD 356
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 93/258 (36%), Gaps = 72/258 (27%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
V +IFGG ++E +VSL S N+ L A + P L+ ID N DPDS
Sbjct: 5 RVGLIFGGKSAEHEVSLQSARNI---LDALDPQRFEPVLI--GIDKQGQWHVN--DPDSF 57
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
+ A +P R A R L+ G ++
Sbjct: 58 -----------------------LLHADDPARIALHRSGRGVA---LLPGAQQQQL---- 87
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
I LA+ + VF VHG +GEDG+LQ LL +P+ G GV+ S
Sbjct: 88 ---------RPIQPEQALAQID--VVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSA 136
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----- 727
MDK + K V R L P V + TL
Sbjct: 137 VAMDK----------------DMAKRVLRDAGLAVAPFVCFDRHTAAHADVDTLIAQLGL 180
Query: 728 ---VKPARDGCSTGVARL 742
VKPA G S GV+++
Sbjct: 181 PLFVKPANQGSSVGVSQV 198
>gi|455669189|gb|EMF34351.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans serovar Pomona str. Fox 32256]
Length = 320
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 39 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 98
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 733
DK A+ L + V ++ K +D + +KL+ +KP
Sbjct: 99 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLDSTDAVITKLETLGFPQFLKPVEG 150
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S V ++ E L E
Sbjct: 151 GSSVSVYKITNREQLK-----------------------------------------EKL 169
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 850
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 170 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 223
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 224 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 278
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 279 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 319
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 136/339 (40%), Gaps = 47/339 (13%)
Query: 124 YAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
Y +S SN+P D E + +G +S + + + DIVF +HG GEDG IQ
Sbjct: 22 YRMSIPFEVSNSP---DLFQEEFQKRYG-VSRTNQIFSLDADIVFLGLHGGQGEDGTIQG 77
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
LE +P+ G+G A A DK A+ + G P F + E +S + V
Sbjct: 78 FLEILGIPYTGSGVLASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLDSTDA---VIT 134
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEGGSE 301
KL+ +KP GSS+ V Y + + LK+ +I E D +V+ + FL G E
Sbjct: 135 KLETLGFPQFLKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLT-GIE 189
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH--TP 359
+ VL+ + L TE + F++ KY +Q H TP
Sbjct: 190 VSCGVLERYRDGKFKKIALPATE----------IVPGGEFFDFESKY---KQGGSHEITP 236
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
R + ++E A + LG ++R D + H+ +
Sbjct: 237 ARISEQEMKRVQELAIAAHRSLGCSGYSRTDFIIVNGEPHILET---------------- 280
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
N + GM +TS + QQA G S + +I R
Sbjct: 281 --NTLPGMTETSLIPQQAKAAGISMEEVFSDLIEIGLKR 317
>gi|237785790|ref|YP_002906495.1| D-alanyl-alanine synthetase A [Corynebacterium kroppenstedtii DSM
44385]
gi|237758702|gb|ACR17952.1| D-alanine-D-alanine ligase [Corynebacterium kroppenstedtii DSM
44385]
Length = 412
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 105/402 (26%), Positives = 158/402 (39%), Gaps = 63/402 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RV ++ GG S+E IS SA +V+ H+ D V I R+ V S+ P
Sbjct: 55 IRVAVVYGGRSSEHSISCVSAGAVISHLDPDRYQVVPIGITRD------GRWVVGSSDPK 108
Query: 138 DFDFKLESLAQGFG----SLSEFAEHLA--------------ANVDIVFPTIHGRFGEDG 179
+ + L + SLS +H A+VD++FP +HG FGEDG
Sbjct: 109 ELSIRERQLPEVKAGTSLSLSLDPQHAGRFVYADGPDVGQVFADVDVIFPVLHGGFGEDG 168
Query: 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239
+Q + + +VP+VG G A + DK + +G +L+ + E N
Sbjct: 169 TVQGLFDMASVPYVGAGVLASAASMDKEFTKKLAAAEGLPIGRDVVLRETRSLTEEEKNL 228
Query: 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGG 299
V VKP R GSSIG++ D L A + + D +V+VE + G
Sbjct: 229 LGL--------PVFVKPARGGSSIGIS-KVDQWDELDDALDLARQH-DSKVIVESMIVG- 277
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
T + V D LP ++E G + + + KYL + P
Sbjct: 278 ---TEVECGVLQRPDGTVEASLPAQLEDTESG------DEGFYGFDTKYL-DNVITAQIP 327
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
P F I IRE A F L ARID +F+ T+ G +L
Sbjct: 328 PHFDDDTIRHIRELAVETFHALDCEGLARID-FFV----------------TDRGPVL-N 369
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
+IN + G S Q +G + ++L +I A P
Sbjct: 370 EINTMPGFTPISMYPQMFGAMGIDYPDLLDLLIQRAMVAHPG 411
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 128/326 (39%), Gaps = 85/326 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HGG GEDGT+Q L + VPY G GV+AS MDK T LA L I +
Sbjct: 156 IFPVLHGGFGEDGTVQGLFDMASVPYVGAGVLASAASMDKEFT----KKLAAAEGLPIGR 211
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
DV +E T E L + VKPAR G S G++++ ++L
Sbjct: 212 DVVLRETRSLT-------EEEKNLLGLPVFVKPARGGSSIGISKVDQWDEL--------- 255
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
D + + Q +K M G
Sbjct: 256 ----------------------------------DDALDLARQHDSKVIVESMIVGT--- 278
Query: 818 VEITVGVIGKC-GSMHSLMPS-VTVKESGD--ILSLEEKFQGGTGINLTPPPASIMSTEA 873
E+ GV+ + G++ + +P+ + ESGD + K+ PP +
Sbjct: 279 -EVECGVLQRPDGTVEASLPAQLEDTESGDEGFYGFDTKYLDNVITAQIPPH---FDDDT 334
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
+ ++ +AL EG +RID FV D G VL E+NT+PG TP +
Sbjct: 335 IRHIRELAVETFHALDCEGLARIDFFVT-DRGPVL-NEINTMPGFTPIS----------- 381
Query: 934 PMYPHQF------FRKVLDLGSERFL 953
MYP F + +LDL +R +
Sbjct: 382 -MYPQMFGAMGIDYPDLLDLLIQRAM 406
>gi|297569924|ref|YP_003691268.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2]
gi|296925839|gb|ADH86649.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2]
Length = 315
Score = 86.3 bits (212), Expect = 8e-14, Method: Composition-based stats.
Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 89/381 (23%)
Query: 68 MAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS 127
MAK+ + LRV L+ GG S ER +SL AR V I + VR Y +L
Sbjct: 1 MAKKEK----LRVALLAGGKSGEREVSLAGAREVEKAINTERYDVRRYDPATDL------ 50
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
A++ ++ P +D+ F +HG GEDG IQ +L+
Sbjct: 51 -ARLVADAP--------------------------QLDVAFILLHGPLGEDGSIQGLLDL 83
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
+P+ G+G A DK D + ++ + + VP++ + GS + + + + KL
Sbjct: 84 LEIPYQGSGVLGSALAMDK-DLAKQLYRHAGLLVPAWEMAGS-ADLDDPARLLQSLKL-- 139
Query: 248 NSGKVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+VVKP R GSS+G+++ ++ +LK A DD+V+VE F+ G E T
Sbjct: 140 ---PLVVKPVRQGSSLGMSLVDQPAELVPALKLAF-----DFDDQVMVEEFI-AGRELTG 190
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL--PTQQVAYHTPPRF 362
VL + PVV + E +F F+Y+ KY T+++ P +
Sbjct: 191 GVLG-NADLTPLPVVEIIPGKEYRF------------FDYQAKYQAGATREIC---PAQL 234
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P V ++ A L Q L L ++R D +V + N
Sbjct: 235 PAEVTAEVQRCACLAHQALNLRGYSRTDMILAEGGLYVLET------------------N 276
Query: 423 LISGMEQTSFLFQQASKVGFS 443
I GM TS L Q A+ G S
Sbjct: 277 TIPGMTPTSLLPQAAATHGLS 297
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
FI +HG +GEDG++Q LL+ +PY G GV+ S MDK LA G+L +
Sbjct: 64 FILLHGPLGEDGSIQGLLDLLEIPYQGSGVLGSALAMDK---DLAKQLYRHAGLLVPAWE 120
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
+ DL D L L+ L VKP R G S G++
Sbjct: 121 MAGSADL------DDPARLLQSLKLP-LVVKPVRQGSSLGMS 155
Score = 45.1 bits (105), Expect = 0.17, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
E+T GV+G + + + + K+Q G + P T + +C
Sbjct: 187 ELTGGVLGNADLTPLPVVEIIPGKEYRFFDYQAKYQAGATREICPAQLPAEVTAEVQRCA 246
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
L AL L G+SR D + G + ++E NT+PGMTP+++L A
Sbjct: 247 C---LAHQALNLRGYSRTDMILA--EGGLYVLETNTIPGMTPTSLLPQAA 291
>gi|71281200|ref|YP_271111.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H]
gi|123630929|sp|Q47VR1.1|DDL_COLP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|71146940|gb|AAZ27413.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H]
Length = 317
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 153/376 (40%), Gaps = 82/376 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SLNS +++ ++ D N I + V
Sbjct: 16 KIAVLYGGNSAEREVSLNSGQAIAKGLE-----------DAGFNVVLIDTKVV------- 57
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ ++ +D VF +HGR GEDG +Q LE ++P+ G+
Sbjct: 58 ----------------PLTDLVSNKIDRVFIALHGRGGEDGCLQGALEYLDIPYTGSNVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ DK + G T P + VN++E S + N L G+V+VKP
Sbjct: 102 GSSLSMDKVRSKQIFKACGIPTAPFTV-----VNKAEFSTLSLENILADLGGRVMVKPAN 156
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILE--GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSSIG+ A ++ + + ++E G D +V++E +++ G E+T +L G
Sbjct: 157 EGSSIGMAQA----KTIAQLRNALIEAFGFDTQVLLEAWID-GPEYTVTIL----GDKAL 207
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
P + + T E ++Y KY T YH P N I+ +
Sbjct: 208 PAIHMETPREF--------------YDYEAKYQST-STQYHCPCGLNERDENEIKSLSMK 252
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F G + R+D + + EW + ++N + GM +TS + +
Sbjct: 253 AFNATGAQGWGRVD--------------IMRNKTGEWQIL---EVNTVPGMTETSLVPKA 295
Query: 437 ASKVGFSHSNILRTII 452
A G + S ++ I+
Sbjct: 296 AKVFGLNFSELVTQIL 311
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 117/300 (39%), Gaps = 90/300 (30%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HG GEDG LQ LE +PYTG V+ S MDKV + G+ T
Sbjct: 70 VFIALHGRGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKA---CGIPTAPF 126
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V K + + +I +L ++ VKPA +G S G+A
Sbjct: 127 TVVNKAEFSTLSLENILADLGGRVM-----VKPANEGSSIGMA----------------- 164
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+A + ++ N + E F ++L + W
Sbjct: 165 -----------QAKTIAQLRNA-----LIEAFGFDTQVLLEA-----------------W 191
Query: 818 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
+ E TV ++G +P++ ++ + E K+Q ST+
Sbjct: 192 IDGPEYTVTILG-----DKALPAIHMETPREFYDYEAKYQS-------------TSTQYH 233
Query: 875 DKC--KQRIELIANALQLEGFS--------RIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
C +R E +L ++ F+ R+D N GE I+EVNTVPGMT ++++
Sbjct: 234 CPCGLNERDENEIKSLSMKAFNATGAQGWGRVDIMRN-KTGEWQILEVNTVPGMTETSLV 292
>gi|336120968|ref|YP_004575755.1| D-alanine--D-alanine ligase [Microlunatus phosphovorus NM-1]
gi|334688767|dbj|BAK38352.1| D-alanine--D-alanine ligase [Microlunatus phosphovorus NM-1]
Length = 330
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 145/377 (38%), Gaps = 70/377 (18%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
++ GG S ER +SL S R V ++ + V +D NL
Sbjct: 14 VLSGGLSHERDVSLRSGRRVAMALRSRGVEVIESDVDSNLIGL----------------- 56
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
L+SL Q +VFP +HG GEDG ++EVL VPFVG+ ACR
Sbjct: 57 -LDSLPQA----------------VVFPVLHGEAGEDGALREVLSLLGVPFVGSVGAACR 99
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS 261
AFDK A+ +++ G T P+ + E+ + + D ++VKP+R+GS
Sbjct: 100 VAFDKSIATTVVAESGVAT-PTQIALPHEIFRELGAQALMAALADQIGFPMMVKPSRSGS 158
Query: 262 SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321
++G + + G G V+E F+ G E T V D G G P
Sbjct: 159 ALGASKVTRPEELPSAMVGAYAYG--SVAVIEQFVS-GVEVTVTVADRGDGPKALP---- 211
Query: 322 PTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL 381
+V++R +++Y +Y + P V + A + L
Sbjct: 212 ----------AVEIRPDSGVYDYAARYT-AGATRFLCPAELDPAVAEACASVALRVHDVL 260
Query: 382 GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVG 441
GL D +R D P G F ++N+ GM +TS + G
Sbjct: 261 GLRDLSRTDLIVTPD-----------------GVPTFLEVNVAPGMTETSAVPLAVESAG 303
Query: 442 FSHSNILRTIIGHACSR 458
+S + +I A R
Sbjct: 304 WSLGKMCADLIRVAARR 320
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 110/298 (36%), Gaps = 72/298 (24%)
Query: 635 QATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT 694
QA VF +HG GEDG L+ +L GVP+ G A + DK S+A +A+ GV T
Sbjct: 62 QAVVFPVLHGEAGEDGALREVLSLLGVPFVGSVGAACRVAFDK---SIATTVVAESGVAT 118
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC--------VKPARDGCSTGVARLCCAE 746
+ E I+ EL ++ L VKP+R G + G +++ E
Sbjct: 119 PTQIALPHE---------IFRELGAQALMAALADQIGFPMMVKPSRSGSALGASKVTRPE 169
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806
+L P++ A+ + + E FV
Sbjct: 170 EL---------------PSAMVGAYAY-------GSVAVIEQFVS--------------- 192
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
VE+TV V + G +P+V ++ + ++ G L P
Sbjct: 193 ----------GVEVTVTVADR-GDGPKALPAVEIRPDSGVYDYAARYTAGATRFLCPAEL 241
Query: 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
EA R+ + L L SR D V D G +EVN PGMT ++ +
Sbjct: 242 DPAVAEACASVALRVH---DVLGLRDLSRTDLIVTPD-GVPTFLEVNVAPGMTETSAV 295
>gi|293397144|ref|ZP_06641418.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
gi|291420615|gb|EFE93870.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
Length = 368
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 162/395 (41%), Gaps = 59/395 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SA++++D I + V ID+ + I+ A Y +
Sbjct: 4 LRVGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQ-GQWHINDASNYLLHAE 62
Query: 135 TPADFDFKLE----SLAQGFGSLSEFAEHLAA---NVDIVFPTIHGRFGEDGGIQEVLEK 187
PA +L G S A A +D+VFP +HG GEDG +Q +L
Sbjct: 63 NPALIALNHSNNNVALVPGQQSRQLIAADGAGALGQLDVVFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG G + DK + G P L + N+ + + +L
Sbjct: 123 ANLPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRANRNKYDFA------QLSE 176
Query: 248 NSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
G + VKP GSS+GV+ V D + + L D +V+VE +AI
Sbjct: 177 RLGLPLFVKPANQGSSVGVS---RVQDRQQYEAAVALAFSFDHKVLVE---------SAI 224
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VG +C +L + Q Q SV ++ D ++Y KY+ Q P
Sbjct: 225 ---VGREIEC---AVLGND---QPQASVCGEIVLNDEFYSYDTKYINEQGAQVVVPAAIS 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ IR+ A F+ L AR+D VF +++ ++ +IN
Sbjct: 276 EAASDKIRQVALKAFRALDCLGMARVD---------VFLTADD--------NVIINEINT 318
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + + G + ++ +I A R
Sbjct: 319 LPGFTNISMYPKLWAASGVDYRQLITRLIELALER 353
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 130/317 (41%), Gaps = 66/317 (20%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
VF VHG +GEDG+LQ LL +P+ G GV+ S MDK T L LA +T
Sbjct: 101 VVFPIVHGTLGEDGSLQGLLRMANLPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R K D + +L+ +L L VKPA G S GV+R+ +D Y A
Sbjct: 161 LTRANRNKYD---------FAQLSERLGL-PLFVKPANQGSSVGVSRV---QDRQQYEAA 207
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ +FS H ++L S +
Sbjct: 208 VAL--------AFSFDH----------------------KVLVESAIVGR---------- 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S+ + + + + S + K+ G + P A +S A
Sbjct: 228 ----EIECAVLGNDQPQASVCGEIVLND--EFYSYDTKYINEQGAQVVVPAA--ISEAAS 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
DK +Q AL G +R+D F+ D+ V+I E+NT+PG T + ++ L
Sbjct: 280 DKIRQVALKAFRALDCLGMARVDVFLTADD-NVIINEINTLPGFT--NISMYPKLWAASG 336
Query: 935 MYPHQFFRKVLDLGSER 951
+ Q ++++L ER
Sbjct: 337 VDYRQLITRLIELALER 353
>gi|149196275|ref|ZP_01873330.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155]
gi|149140536|gb|EDM28934.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155]
Length = 1029
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 157/373 (42%), Gaps = 83/373 (22%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ L++ ++ GGPS+ER ISL SA +V ++ + ++ +
Sbjct: 728 KALKIAVLKGGPSSERPISLQSAEAVAKALRD--------------GGHEVTEIDIT--- 770
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
DF L ++++ ++D+VFP +HG FGEDG +Q+++E P+VG
Sbjct: 771 ----DFSLPAISK--------------DIDLVFPVLHGEFGEDGQVQKLIEGQGFPYVGC 812
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
+ DK A E+ G S +L+ + E+S N P VVK
Sbjct: 813 DITSSELCIDKDAAVCELRNSGLPVCDSVVLRS---KDEEISQ----NITLP----CVVK 861
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P R GSSI +++ D L+KA + E DD V+VE F + G E T ++D G
Sbjct: 862 PNRQGSSISLSLVEKEGD-LRKAIDLAFEN-DDTVLVESFFK-GIECTVGLID---GKAL 915
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ-QVAYHTPPRFPIVVINSIREGA 374
V ++P E F+Y KY ++ + Y+ PP+ I E
Sbjct: 916 SVVEIIPPE---------------GFFDYDAKYTYSKGKTQYNCPPK-------EIPEDV 953
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
S ++ G F + G L +++ K+ + + N + G +S L
Sbjct: 954 SERLKKCGEESFKVLKGRHLMRVDMIWNPDSDKF--------IILEANTMPGFTSSSLLP 1005
Query: 435 QQASKVGFSHSNI 447
+ A + G S + +
Sbjct: 1006 KAAKRDGISFTEL 1018
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 74/291 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDG +Q L+E +G PY G + +S+ C+DK A A+ L + G+ +
Sbjct: 784 VFPVLHGEFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDA---AVCELRNSGLPVCDS 840
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V R +D +I +T L C VKP R G S ++ + DL KA++
Sbjct: 841 VVLRSKD------EEISQNIT--LPC---VVKPNRQGSSISLSLVEKEGDLR---KAID- 885
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
L FE N D ++ + +
Sbjct: 886 --------------------------LAFE-----------------NDDTVLVESFFKG 902
Query: 818 VEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKF---QGGTGINLTPPPASIMSTEA 873
+E TVG+I GK S+ ++P + K+ +G T N P +E
Sbjct: 903 IECTVGLIDGKALSVVEIIP------PEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSER 956
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
L KC + + L R+D N D+ + +I+E NT+PG T S++L
Sbjct: 957 LKKCGEESFKVLKGRHL---MRVDMIWNPDSDKFIILEANTMPGFTSSSLL 1004
>gi|197116892|ref|YP_002137319.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
gi|226696387|sp|B5EBQ4.1|DDL_GEOBB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|197086252|gb|ACH37523.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
Length = 305
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 89/327 (27%)
Query: 603 LKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVP 662
+K+ G D+ +LP R LA+E FIA+HG GEDG++Q LLE G+P
Sbjct: 37 VKQGFRAVGIDVGRDLPQR--------LAEEQVELAFIALHGRFGEDGSVQGLLELMGIP 88
Query: 663 YTGPGVMASKTCMDKVATSLALNHLADLGV-LTINKDVRRKEDL-LKTPIVDIWHELTSK 720
YTG GV+AS +DK+A+ + A G+ L + +RR E+L L P+
Sbjct: 89 YTGSGVLASALAIDKIASKVI---FASAGLKLAPYQVLRRGEELKLANPL---------- 135
Query: 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
+ VKP+R+G S GV ++R P SR ++
Sbjct: 136 ----PVVVKPSREGSSVGVG------------------IVRDP----SRMQAALD----- 164
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVT 839
E F EIL +G E+ VG++ GK ++P
Sbjct: 165 ------EAFRYDSEILI--------------EGFIDGREVQVGILNGKALGAIEIIP--- 201
Query: 840 VKESGDILSLEEKFQGGTGINLTPP--PASIMSTEALDKCKQRIELIANALQLEGFSRID 897
G+ E K+ G ++ P P ++ + + ++ E AL + +SR+D
Sbjct: 202 ---KGEFYDYEAKYTDGGAQHILPARLPEAVYA-----EVLRQGEKAHAALGCDCYSRVD 253
Query: 898 AFVNVDNGEVLIIEVNTVPGMTPSTVL 924
F+ + G+ ++EVNT+PGMT ++L
Sbjct: 254 -FLVTETGDCFLLEVNTLPGMTDLSLL 279
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 155/381 (40%), Gaps = 93/381 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SLNS ++VL + + + A I V + P
Sbjct: 10 KIAVLMGGLSAEREVSLNSGKAVLASL-----------VKQGFRAVGID---VGRDLP-- 53
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
AE V++ F +HGRFGEDG +Q +LE +P+ G+G
Sbjct: 54 ---------------QRLAEE---QVELAFIALHGRFGEDGSVQGLLELMGIPYTGSGVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK + + + G P +L+ E E +L+N VVVKP+R
Sbjct: 96 ASALAIDKIASKVIFASAGLKLAPYQVLRRGE--ELKLANPL----------PVVVKPSR 143
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+GV G++ + + + E D +++E F++ G E +L+ G
Sbjct: 144 EGSSVGV----GIVRDPSRMQAALDEAFRYDSEILIEGFID-GREVQVGILN-GKAL--- 194
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSIREGAS 375
G++++ K ++Y KY T A H P R P V +
Sbjct: 195 --------------GAIEIIPKGEFYDYEAKY--TDGGAQHILPARLPEAVYAEVLRQGE 238
Query: 376 LLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
LG CD ++R+D FL TE G ++N + GM S L
Sbjct: 239 KAHAALG-CDCYSRVD--FL---------------VTETGDCFLLEVNTLPGMTDLSLLP 280
Query: 435 QQASKVGFSHSNILRTIIGHA 455
+ A G + ++ I+ A
Sbjct: 281 EIAGGAGIAFGELVLRILQAA 301
>gi|420154027|ref|ZP_14660959.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
massiliensis F0489]
gi|394756437|gb|EJF39538.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
massiliensis F0489]
Length = 393
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 146/372 (39%), Gaps = 34/372 (9%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDRNLNAYA 125
GR RV ++ GG S E IS +A VL I D V + +D + A A
Sbjct: 21 GRKPRVAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPIGITLSGQWVLVDDDPAALA 80
Query: 126 ISSAQVYSNTPADFDFKLESLAQ-GFGSLSEF---AEHLAANVDIVFPTIHGRFGEDGGI 181
+ ++ AD + E Q G G+L+ + VD+V P +HG +GEDG I
Sbjct: 81 LDDSRPPVEITADGLGRGELAVQLGSGALTALTPSGPDVLGGVDVVLPLLHGPYGEDGTI 140
Query: 182 QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
Q +LE + +VG G A DK + +S G T P +++ +
Sbjct: 141 QGMLEMLGIRYVGCGVLASAAGMDKQVTKVLLSAAGIATAPHVVIEPHRWKRDRDAVLQA 200
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
+LD + VKP RAGSS+G+T D L + +D +V+VE + G
Sbjct: 201 CEELDY---PLFVKPARAGSSLGITKVERREDLLAAIE--TARAVDPKVLVETGITGREV 255
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
A+ +G D P V P E+ + ++Y KYL V P R
Sbjct: 256 EVAV---LGGRGDDAPRVAEPGEIVMDAS-----HGAGEFYDYETKYLAHDAVQMVCPAR 307
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ A+ F +G R+D + V + T G FT
Sbjct: 308 LTAAERELVMSTAAEAFIAIGAEGLTRVDFFVTDDGRAVVNEVNTMPG--------FTPF 359
Query: 422 NLISGMEQTSFL 433
++ M +TS L
Sbjct: 360 SMYPYMWKTSGL 371
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 125/319 (39%), Gaps = 82/319 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q +LE G+ Y G GV+AS MDK T + L+ G+ T
Sbjct: 126 VLPLLHGPYGEDGTIQGMLEMLGIRYVGCGVLASAAGMDKQVTKVLLSA---AGIATAPH 182
Query: 698 DV----RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V R K D + ++ EL L VKPAR G S G+ ++ EDL ++
Sbjct: 183 VVIEPHRWKRD--RDAVLQACEELDYP-----LFVKPARAGSSLGITKVERREDLLAAIE 235
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
+RA +P ++L + T +
Sbjct: 236 T-------------ARA---------------VDP-----KVLVETGITGR--------- 253
Query: 814 NSRWVEITVGVIGKCG--SMHSLMPSVTVKE----SGDILSLEEKFQGGTGINLTPPPAS 867
E+ V V+G G + P V + +G+ E K+ + + P
Sbjct: 254 -----EVEVAVLGGRGDDAPRVAEPGEIVMDASHGAGEFYDYETKYLAHDAVQMVCPARL 308
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
+ L IA + EG +R+D FV D+G ++ EVNT+PG TP +
Sbjct: 309 TAAERELVMSTAAEAFIA--IGAEGLTRVDFFVT-DDGRAVVNEVNTMPGFTPFS----- 360
Query: 928 ALSEQPPMYPHQFFRKVLD 946
MYP+ + LD
Sbjct: 361 -------MYPYMWKTSGLD 372
>gi|261414467|ref|YP_003248150.1| D-alanine--D-alanine ligase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789456|ref|YP_005820579.1| D-alanyl D-alanine ligase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261370923|gb|ACX73668.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327372|gb|ADL26573.1| D-alanyl D-alanine ligase [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 344
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 166/377 (44%), Gaps = 46/377 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRV ++ GGPS E +S+ S V+ + + + ID++ + SS ++ A
Sbjct: 4 LRVLVLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKD-GTWHWSSRELSPYQKA 62
Query: 138 DFDFKLESLAQGFGSLSEFAEHLA--ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+F +G + + + L+ + DI F +HG++GEDG IQ +LE +N+P+ G
Sbjct: 63 NFSENYFHSLEGTAANKKKSPALSELPSADIAFLALHGKWGEDGHIQAMLENWNIPYTGC 122
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
G A A DK S E+ + I P + + + + + + + + D +V+K
Sbjct: 123 GLLASALAMDKI-KSKEIYRANGIPTPPYRV----IWKHDFTGDTLVSVADELGYPLVIK 177
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ +A + ++ K A+ + + +R++ E F+ GG + G+
Sbjct: 178 DPLGGSSIGIGIAKNLDEAGKIAQDLFKD--SNRLLCEKFIAGG--------EASCGYIE 227
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
L PTE+ + RE F++ KY + TP F + I+E
Sbjct: 228 GEKPLPPTEMRMT------TRE---YFDFEAKY--NGECQEVTPAEFAPELTARIQELVK 276
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
LG ++R D T+ G + + N + GM TS L Q
Sbjct: 277 NAHYALGGAGYSRTDVRI-----------------TKDGELFAIETNTLPGMTPTSLLPQ 319
Query: 436 QASKVGFSHSNILRTII 452
QA+ VG ++S ++ II
Sbjct: 320 QAACVGITYSQLIDLII 336
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 71/295 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
F+A+HG GEDG +Q++LE +PYTG G++AS MDK+ + K
Sbjct: 94 AFLALHGKWGEDGHIQAMLENWNIPYTGCGLLASALAMDKIKS----------------K 137
Query: 698 DVRRKEDLLKTPIVDIW-HELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
++ R + P IW H+ TG + A++L +
Sbjct: 138 EIYRANGIPTPPYRVIWKHDF-------------------TGDTLVSVADELGYPL---- 174
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+++ P S G+ + DE +Q K+++RL+ +
Sbjct: 175 --VIKDPLGGSSIGIGIAK---------------NLDEAGKIAQDLFKDSNRLLCE---- 213
Query: 817 WVEITVGVIGKCGSMHS---LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
+ G CG + L P+ + + E K+ G +TP + + E
Sbjct: 214 --KFIAGGEASCGYIEGEKPLPPTEMRMTTREYFDFEAKYNGECQ-EVTP---AEFAPEL 267
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+ ++ ++ AL G+SR D + D GE+ IE NT+PGMTP+++L QA
Sbjct: 268 TARIQELVKNAHYALGGAGYSRTDVRITKD-GELFAIETNTLPGMTPTSLLPQQA 321
>gi|340794708|ref|YP_004760171.1| D-alanine-D-alanine ligase [Corynebacterium variabile DSM 44702]
gi|340534618|gb|AEK37098.1| D-alanine-D-alanine ligase [Corynebacterium variabile DSM 44702]
Length = 365
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 162/390 (41%), Gaps = 51/390 (13%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDL-LVRCYYIDRNLNAYAISSAQVYSNTPAD 138
V ++ GG ++E IS SA +V+ H+ D +V + + + + S D
Sbjct: 15 VAVLYGGQNSEHSISCLSAAAVMSHLDPDRYEVVPVGITETGMWVKGTTDTEALSAHGRD 74
Query: 139 F-DFKLE--------SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
K+ S A G G L L A VD++FP +HGR GEDG +Q VLE N
Sbjct: 75 LPTVKMSRGVHLVPGSFASGRGQLRYGDGSLYAEVDVIFPVLHGRNGEDGTVQGVLELSN 134
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
VP+VG G A DK L G VP G EV +E + +T++
Sbjct: 135 VPYVGNGVLASAACMDKQYTKLIARAAG---VPV----GDEVVLTERRD--LTDEEKEMI 185
Query: 250 G-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
G V VKP R GSS+G++ D L A+ E D +++VE L G ++
Sbjct: 186 GLPVFVKPARGGSSVGISKVSDWAD-LDAAEAHAFEH-DTKILVEAMLHG--------VE 235
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
V G +P + +G+ D E + + KYL ++Y P P +
Sbjct: 236 VECGVLQYPDGTVHASQPSLLEGTEDGPE--GFYGFDTKYL-DDIISYEIPAPLPEGQAD 292
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
++R A F+ L AR+D +F+ TE G +L + N + G
Sbjct: 293 AVRRWAVETFRALDCEGLARVD-FFV----------------TEDGPVL-NEPNTMPGFT 334
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G +++ +L +I A R
Sbjct: 335 PISMYPKMFEATGVAYTELLDILIARALVR 364
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 21/116 (18%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL----ALNHLADLGVL 693
+F +HG GEDGT+Q +LE VPY G GV+AS CMDK T L A + D VL
Sbjct: 112 IFPVLHGRNGEDGTVQGVLELSNVPYVGNGVLASAACMDKQYTKLIARAAGVPVGDEVVL 171
Query: 694 TINKDVRRKE-DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
T +D+ +E +++ P+ VKPAR G S G++++ DL
Sbjct: 172 TERRDLTDEEKEMIGLPVF----------------VKPARGGSSVGISKVSDWADL 211
>gi|422651410|ref|ZP_16714205.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330964488|gb|EGH64748.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 363
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 162/390 (41%), Gaps = 55/390 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNTPA 137
V ++ GG S+E +SL SAR+V++ I + + +D+ A + +N PA
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64
Query: 138 DFDFK--------LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
L A G E + LAA +D+VFP IHG FGEDG +Q +L
Sbjct: 65 RIKLSGSGKQLSLLPGSAGGQFVEVETGQPLAA-IDVVFPLIHGAFGEDGALQGLLRMLA 123
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE-LSNWFVTNKLDPN 248
VPFVG A DK D + + + I V F++ +N E LS +L
Sbjct: 124 VPFVGADVLASAACMDK-DVTKRLLRDAGIAVAPFMV----LNRGESLSFAQAAAQL--- 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
S + VKP GSS+GV+ V D A + L D +L +E G
Sbjct: 176 SLPMFVKPANQGSSVGVS---KVSDEADFAAALALGFEFDH---KLLIEQGI-------- 221
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
VG +C VL E ++ G +V D + Y KYL Q P P + +
Sbjct: 222 VGREVEC--AVLGNDEPQVSVCG--EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSD 277
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+R+ A ++ LG +R+D +F+ TE I+ ++N + G
Sbjct: 278 QVRDVALQAYKVLGCAGLSRVD-FFV----------------TEAREIIINEVNTLPGFT 320
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G S++ ++ +I A R
Sbjct: 321 SISMYPKLWQASGLSYAELIHRLIVLALER 350
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ LL VP+ G V+AS CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLASAACMDKDVTK---RLLRDAGIAVAP 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
V + + L + + ++L + VKPA G S GV+++ D
Sbjct: 157 FMVLNRGESLS------FAQAAAQLSL-PMFVKPANQGSSVGVSKVSDEADFA 202
>gi|440722787|ref|ZP_20903161.1| D-alanyl-alanine synthetase A [Pseudomonas syringae BRIP34876]
gi|440725641|ref|ZP_20905905.1| D-alanyl-alanine synthetase A [Pseudomonas syringae BRIP34881]
gi|440360708|gb|ELP97967.1| D-alanyl-alanine synthetase A [Pseudomonas syringae BRIP34876]
gi|440368436|gb|ELQ05472.1| D-alanyl-alanine synthetase A [Pseudomonas syringae BRIP34881]
Length = 363
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 159/390 (40%), Gaps = 55/390 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S+E +SL SAR+V++ I + + +D+ A N
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64
Query: 140 DFKLESLAQGFGSL-----SEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
KL + + L +F E A +D+VFP IHG FGEDG +Q +L V
Sbjct: 65 RIKLSASGKPLSLLPGSVGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPN 248
PFVG + DK D + + + I V F L +G ++ E + D
Sbjct: 125 PFVGADVLSSAVCMDK-DVTKRLLRDAGIAVAPFRVLSRGDSLSFKEAA--------DQL 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ VKP GSS+GV+ V D A + L D +L +E G
Sbjct: 176 GLPMFVKPANQGSSVGVS---KVSDEAGFAAALALGFEFDH---KLLIEQGI-------- 221
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
VG +C VL +V++ G +V D + Y KYL Q P P V+ +
Sbjct: 222 VGREVEC--AVLGNVDVQVSVCG--EVIANDEFYAYDTKYLNGDQARIAIPAELPAVLSD 277
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+RE A ++ LG +R+D +F+ TE I+ ++N + G
Sbjct: 278 QVREVALQAYKVLGCAGLSRVD-FFV----------------TEGRDIIINEVNTLPGFT 320
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G S++ ++ +I A R
Sbjct: 321 SISMYPKLWQASGLSYAELIHRLIVLALER 350
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ LL VP+ G V++S CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLSSAVCMDKDVTK---RLLRDAGIAVAP 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
V + D L + E +L + VKPA G S GV+++
Sbjct: 157 FRVLSRGDSLS------FKEAADQLGL-PMFVKPANQGSSVGVSKV 195
>gi|381164786|ref|ZP_09874016.1| D-alanine--D-alanine ligase [Saccharomonospora azurea NA-128]
gi|379256691|gb|EHY90617.1| D-alanine--D-alanine ligase [Saccharomonospora azurea NA-128]
Length = 365
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 111/418 (26%), Positives = 164/418 (39%), Gaps = 88/418 (21%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI------------------ 117
R RV ++ GG S E IS SA S+L ++ D V +
Sbjct: 4 RKTRVAVVFGGRSTEHTISCVSAGSILANLDPDRFEVVPIGVTQAGGWVLGTNDPETLRI 63
Query: 118 -DRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFG 176
DR L A A V + P + SL G E AE L+A VD+VFP +HG FG
Sbjct: 64 RDRALPAVEGGKALVLAGDPTTG--GVVSLEPG-----EHAEVLSA-VDVVFPVLHGAFG 115
Query: 177 EDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236
EDG IQ +LE ++P+VG G A A DK A ++ +G E+
Sbjct: 116 EDGTIQGLLELADLPYVGAGVFASAAAMDKEYAKKLLAAEGL----------------EV 159
Query: 237 SNWFVTNKLD---PNSGK------VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL-EGI 286
+ V + P+ + V VKP RAGSSIG++ V D + I L
Sbjct: 160 GRFAVVRRGQATLPDEERERLGLPVFVKPARAGSSIGISR---VTDWSQLDAAIALARET 216
Query: 287 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDV--REKDAIFNY 344
D +V+VE VG +C + VE + V + DA +++
Sbjct: 217 DPKVMVE------------AETVGREVECGVLEFPDGRVEASLPAEIRVLSDDADAWYDF 264
Query: 345 RRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSS 404
KYL + P + V +R+ A F L AR+D +F+ +
Sbjct: 265 ETKYL-GEDAELDIPAKLDDTVTERLRDAAVRAFGALDCQGLARVD-FFVGAD------- 315
Query: 405 ETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
GT+ ++N + G TS + G + +L T++ A +R L
Sbjct: 316 ---------GTLTVNEVNTMPGFTATSAYPKMWEVTGVDYPTLLTTLVETALARGTGL 364
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LLE +PY G GV AS MDK A L ++G +
Sbjct: 106 VFPVLHGAFGEDGTIQGLLELADLPYVGAGVFASAAAMDKEYAKKLLAAEGLEVGRFAV- 164
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
VRR + L E +L VKPAR G S G++R+
Sbjct: 165 --VRRGQATLP-------DEERERLGLPVF-VKPARAGSSIGISRV 200
>gi|154508227|ref|ZP_02043869.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC
17982]
gi|153797861|gb|EDN80281.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
odontolyticus ATCC 17982]
Length = 342
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 154/373 (41%), Gaps = 92/373 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V +I GG + ER +S+ S R V + + VR +D
Sbjct: 4 KVLIIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVD-------------------- 43
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
SLA+ S S D+V+P +HG GEDG +Q LE +PFVG+ S
Sbjct: 44 -----ASLAEAISSFSP---------DVVWPLVHGSIGEDGSLQSFLESLGIPFVGSSSV 89
Query: 199 ACRQAFDKYDA-----SLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN-SGKV 252
A +K A S ++ G++T+P + + +L V + L+ + S V
Sbjct: 90 QAMLASNKPTAKALLGSAGLATPGWVTLPQAIFR-------QLGASHVLSALEGSVSFPV 142
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID-----DRVVVELFLEGGSEFTAIVL 307
V+KPT GS++G++ A + AK + +D R++VE ++ G + V+
Sbjct: 143 VIKPTDGGSALGISTA-------QDAKALRRAMVDAFAYGQRLMVEQRID-GRDVAVSVV 194
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
D+ G PV L P EV R + ++Y +Y T + Y P R ++
Sbjct: 195 DLWDG----PVALPPVEVSTD-------RGR---YDYDARY-TTDETEYFVPARLSDELL 239
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++ A LGL D +R+D + + GT F D N+ GM
Sbjct: 240 ADLQAAAVEAHTTLGLRDLSRMD-----------------FVVDDEGTCWFIDANVAPGM 282
Query: 428 EQTSFLFQQASKV 440
TS L Q A +
Sbjct: 283 TDTSLLPQAADAL 295
Score = 40.4 bits (93), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
V+ VHG IGEDG+LQS LE+ G+P+ G + + +K L LA G +T+
Sbjct: 58 VWPLVHGSIGEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTL 117
Query: 696 NKDVRRK 702
+ + R+
Sbjct: 118 PQAIFRQ 124
>gi|385676292|ref|ZP_10050220.1| D-alanine--D-lactate ligase [Amycolatopsis sp. ATCC 39116]
Length = 345
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 160/391 (40%), Gaps = 73/391 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ---------GDDLLVRCYYIDRNLNAYAISS 128
L VG+I GG E +S+ SAR V H+ G D + +
Sbjct: 4 LTVGIIFGGAGEEHPVSVKSAREVAKHLDPGKYEPIWIGITTGGEWKLCDGPGEGWETGN 63
Query: 129 AQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
A+ + +P L + QG + +D+VFP +HG+ GEDG IQ +LE
Sbjct: 64 ARPAALSPDRGVHGLLVMEQG--------SYETVRLDVVFPVLHGKLGEDGAIQGLLELA 115
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT--NKLD 246
+P+VG G + DK A + G I P F W VT +K+D
Sbjct: 116 GIPYVGCGIQGSAVCMDKSLAYTVAANAG-IATPRF--------------WIVTEDDKVD 160
Query: 247 PN--SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG---IDDRVVVELFLEGGSE 301
P+ S V VKP R+GSS GV+ G D L A LE D ++++E ++ G E
Sbjct: 161 PDSLSYPVFVKPARSGSSFGVSKVTGA-DELPAA----LEDARQYDSKILIEAAVD-GEE 214
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL+ SG VV V+L G + ++D+ ++ + P
Sbjct: 215 IGCAVLEEQSGL----VVGEVDRVDLT-HGFFRIHQEDS------PETGSENATFIVPAD 263
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
P ++E A +++ LG AR+D VF +++ G ++ ++
Sbjct: 264 IPDASRTLVQETAKTIYRALGCTGLARVD---------VFLTAD--------GQVVLNEV 306
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTII 452
N + GM S + + G S ++ ++
Sbjct: 307 NTMPGMTSYSRYPRMMNAAGLPLSEVIDRLV 337
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 24/116 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT--- 694
VF +HG +GEDG +Q LLE G+PY G G+ S CMDK SLA A+ G+ T
Sbjct: 94 VFPVLHGKLGEDGAIQGLLELAGIPYVGCGIQGSAVCMDK---SLAYTVAANAGIATPRF 150
Query: 695 --INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ +D + D L P+ VKPAR G S GV+++ A++L
Sbjct: 151 WIVTEDDKVDPDSLSYPVF----------------VKPARSGSSFGVSKVTGADEL 190
>gi|417753024|ref|ZP_12401177.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|333770968|gb|EGL47941.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 348
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 168/388 (43%), Gaps = 53/388 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + Q +S PA +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQ---FIKTQEFSEKPAATER 64
Query: 142 KLESLAQGFGSL---SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + S+ E A +VFP +HG GEDG IQ LE +P+VGT
Sbjct: 65 LMTNSTIQYEQQIKPSDIYEEDA----VVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNIL 120
Query: 199 ACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G V + + G ++ +T L + + VKP
Sbjct: 121 SSSVAMDKITTKRVLESAGIPQVAYTVYIDGQDLEAC------LTETLATLAFPIFVKPA 174
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A + LK+A + L D RV++E +G A ++VG
Sbjct: 175 NMGSSVGISKA-QTKEELKEAIQLAL-TYDSRVLIE---QG---VVAREIEVG------- 219
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
+L TEV+ G V V++ + ++Y+ KY+ ++ P + + A
Sbjct: 220 -LLGNTEVKSTLPGEV-VKDVE-FYDYKAKYIDN-KITMAIPAEIDQDTMTKMHTYAESA 275
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ LG C +R D +FL ++ G I ++N + G Q S
Sbjct: 276 FKALGGCGLSRCD-FFL----------------SQDGQIYLNELNTMPGFTQWSMYPLLW 318
Query: 438 SKVGFSHSNILRTIIGHACSRFPNLASY 465
+G ++S+++ ++ A F S+
Sbjct: 319 ENMGLAYSDLIEELVTLAQEMFDQRESH 346
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L V
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTKRVLESAGIPQV 143
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
T+ D + E L + + + VKPA G S G+++ E+L
Sbjct: 144 AYTVYIDGQDLEACLTETLATL---------AFPIFVKPANMGSSVGISKAQTKEEL 191
>gi|367467156|ref|ZP_09467161.1| D-alanine--D-alanine ligase [Patulibacter sp. I11]
gi|365817718|gb|EHN12667.1| D-alanine--D-alanine ligase [Patulibacter sp. I11]
Length = 334
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 158/384 (41%), Gaps = 63/384 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG S+E +SL SA SV D ++ V ++ R A+ + + TP
Sbjct: 3 KVAVLGGGRSSEHEVSLRSAASVADGLRSAGHEVVPVHLTRE-GAWTTDDGRTVTLTP-- 59
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT--- 195
G G L + D+ FP +HG FGEDG +Q +LE +VP+VG
Sbjct: 60 ----------GAGLL---------DCDVAFPVLHGPFGEDGAVQGLLELLDVPYVGAPVL 100
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
GS C DK + M+ G +P + + + + V ++ V VK
Sbjct: 101 GSAVC---MDKLISKDLMAAAG---IPQVDYEAVQAADWDADRDAVLERVAGLGLPVWVK 154
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P+R GSS+G+ A+ + +G + D RV+VE G TA+ +GSG
Sbjct: 155 PSRLGSSVGIAPAHTADEVAPAIEGALRH--DARVIVEAAATGIEAETAV---LGSG--- 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
EV Q + + DA ++Y KY P + P ++RE A+
Sbjct: 207 -----AAPEVSEVGQIVLTSDDPDAWYDYEAKYTP-GGMELRVPAPISDTAKATLREIAA 260
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F + AR+D F E T+L ++N + G +TS +
Sbjct: 261 RAFTLSCVEGLARVD---------FFVDGE---------TVLLNELNTLPGFTETSVYGK 302
Query: 436 QASKVGFSHSNILRTIIGHACSRF 459
G ++ +++ ++ A RF
Sbjct: 303 LWEASGVAYPDLVSRLVELAAERF 326
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 130/329 (39%), Gaps = 87/329 (26%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG GEDG +Q LLE VPY G V+ S CMDK+ ++ + +A G+ ++ +
Sbjct: 70 FPVLHGPFGEDGAVQGLLELLDVPYVGAPVLGSAVCMDKL---ISKDLMAAAGIPQVDYE 126
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
+ D + E + L + VKP+R G S G+A
Sbjct: 127 AVQAADWDADRDAVL--ERVAGLGLP-VWVKPSRLGSSVGIA------------------ 165
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
P DE+ + + ++ R++ + + +
Sbjct: 166 -----------------------------PAHTADEVAPAIEGALRHDARVIVEAAATGI 196
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDIL----------SLEEKFQGGTGINL-TPPPAS 867
E V+G + V E G I+ E K+ G G+ L P P S
Sbjct: 197 EAETAVLGSGAAPE-------VSEVGQIVLTSDDPDAWYDYEAKYTPG-GMELRVPAPIS 248
Query: 868 IMSTEALDKCKQRI-ELIANALQL---EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
D K + E+ A A L EG +R+D F VD VL+ E+NT+PG T ++V
Sbjct: 249 -------DTAKATLREIAARAFTLSCVEGLARVDFF--VDGETVLLNELNTLPGFTETSV 299
Query: 924 LIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ L E + ++++L +ERF
Sbjct: 300 --YGKLWEASGVAYPDLVSRLVELAAERF 326
>gi|308067503|ref|YP_003869108.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681]
gi|305856782|gb|ADM68570.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681]
Length = 362
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 163/392 (41%), Gaps = 56/392 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--NLNAYAISSAQVYSNT 135
L VGL+ GG S E +SL +A +V++ + + +YI + + A+ SA + S
Sbjct: 6 LTVGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGALLSAPLASVD 65
Query: 136 PADFDFKLESLAQG--------FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
KLE G FG L + E +D++FP +HG FGEDG IQ + E
Sbjct: 66 ----QLKLERAEGGTKAALDTLFGKL--YGEQ---TLDVLFPLLHGTFGEDGTIQGLFEM 116
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
++P+VG G A DK G V ++ ++ S+ V N
Sbjct: 117 ADMPYVGAGVLASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQT--SHDLVRNMETE 174
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
VKP GSS+G++ A + L+KA + L+ D +V+VE +++ E VL
Sbjct: 175 LGYPCFVKPANLGSSVGISKANNR-EELEKAVDLALQ-FDLKVIVEEYVD-AREIEVSVL 231
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
G D P+ +P E+ V D ++Y KY Q P V
Sbjct: 232 ----GND-EPIASVPGEI---------VSSSD-YYDYAAKYTDGQSEML-IPAPLDEEVA 275
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ IRE A F+ L C +R D + S H IL ++N + G
Sbjct: 276 DRIREAALQAFRALEGCGISRADFFVRRSDGH----------------ILINEVNTMPGF 319
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + G S++++L +I A R+
Sbjct: 320 TPFSMYPLLWRETGVSYASLLDRMIALALERY 351
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 108/289 (37%), Gaps = 67/289 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F +HG GEDGT+Q L E +PY G GV+AS MDK H L +
Sbjct: 95 VLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVLASAAGMDKGVMKKLFEHAGLPQVKYCY 154
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVY 751
N T H+L ++ + VKPA G S G+++ E+L
Sbjct: 155 FN----------STQWAQTSHDLVRNMETELGYPCFVKPANLGSSVGISKANNREELEKA 204
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
V + L++ I E +V+
Sbjct: 205 VDLALQFDLKV----------------------IVEEYVDAR------------------ 224
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
EI V V+G + S+ P V S D K+ G L P P +
Sbjct: 225 -------EIEVSVLGNDEPIASV-PGEIVS-SSDYYDYAAKYTDGQSEMLIPAP---LDE 272
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
E D+ ++ AL+ G SR D FV +G +LI EVNT+PG TP
Sbjct: 273 EVADRIREAALQAFRALEGCGISRADFFVRRSDGHILINEVNTMPGFTP 321
>gi|11527846|gb|AAG37026.1|AF277571_3 D-alanine:D-lactate ligase [Enterococcus faecium]
gi|27461217|gb|AAM09849.1| D-alanine:D-lactate ligase [Enterococcus faecium]
Length = 343
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 170/395 (43%), Gaps = 69/395 (17%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID-RNLNAYAISSA-----QV 131
L++ ++ GG S E +S+ SA V +I + + +YI A+ + +
Sbjct: 4 LKIAVLFGGCSEEHDVSVKSAMEVAANINKEKY--QPFYIGITKSGAWKLCDKPCRDWEN 61
Query: 132 YSNTPADF--DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
Y+ PA D ++ L + + + + VD+V P IHG+FGEDG IQ +LE
Sbjct: 62 YAGYPAVISPDRRIHGLL-----IQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSG 116
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPN 248
+P+VG ++ DK A + + G I VP F +LQ + E+E ++
Sbjct: 117 IPYVGCDIQSSVICMDKSLAYMVVKNAG-IEVPGFRVLQKGDSLEAETLSY--------- 166
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIV 306
V VKP R+GSS GV + ++ + + E D +++VE + G AI
Sbjct: 167 --PVFVKPARSGSSFGVN----KVCRAEELQAAVTEAGKYDSKILVEEAVSGSEVGCAI- 219
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAYHTPPRFP 363
+G+G D L+ EV+ + K F ++ P ++ P P
Sbjct: 220 --LGNGND-----LITGEVD-------QIELKHGFFKIHQEAQPEKGSENAVIRVPAALP 265
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
V I+E A +++ LG ARID FL E G+I+ ++N
Sbjct: 266 DEVREQIQETAKKIYRVLGCRGLARID-LFL----------------REDGSIVLNEVNT 308
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + + GF+ S IL +IG + R
Sbjct: 309 MPGFTSYSRYPRMMTAAGFTLSEILDRLIGLSLRR 343
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
V +HG GEDGT+Q LLE G+PY G + +S CMDK SLA + + G+
Sbjct: 93 VVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQSSVICMDK---SLAYMVVKNAGIEVPG 149
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
V +K D L+ + + VKPAR G S GV ++C AE+L V
Sbjct: 150 FRVLQKGDSLEAETLSY-----------PVFVKPARSGSSFGVNKVCRAEELQAAV 194
>gi|325068478|ref|ZP_08127151.1| D-alanyl-alanine synthetase A [Actinomyces oris K20]
Length = 388
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 157/398 (39%), Gaps = 51/398 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI----SSAQVYS 133
+RV ++ GG S E IS +A VL I + V I + ++ ++
Sbjct: 19 VRVAVVFGGRSGEHTISCATAAGVLSAIDRNRYEVLPVGITPEGQWLLVEDDPAALELSD 78
Query: 134 NTPADFDFKLESLAQG----------FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
N P E L +G L + VD+V P +HG +GEDG IQ
Sbjct: 79 NRPP-VTITAEGLGRGRLTAPLGGGELTVLGPTGPEVLGQVDVVLPLLHGPYGEDGTIQG 137
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+LE +P+VG G A DK + + G T P ++ +
Sbjct: 138 MLEMMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACR 197
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII--LEGIDDRVVVELFLEGGSE 301
L + + VKP RAGSS+G++ +D + G I +D +V+VE + G E
Sbjct: 198 SL---TYPLFVKPARAGSSLGIS----KVDRPEDLAGAIKAARAVDPKVLVESGIV-GRE 249
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL G G D P V P E+ + QG+ + ++Y KYL VA P
Sbjct: 250 VEVAVLQ-GRGDDA-PRVAEPGEIAMDASQGAGE------FYDYETKYLAHDAVAMVCPA 301
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R + + A+ F+ LG AR+D +FL TE G + +
Sbjct: 302 RIDPEARALLMDTAARAFEALGCEGLARVD-FFL----------------TEAGEAVVNE 344
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G S G ++ ++ +I A +R
Sbjct: 345 INTMPGFTPFSMYPYMWQVSGLGYTELVSELIELAVAR 382
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 125/307 (40%), Gaps = 70/307 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q +LE G+PY G GV+AS MDK T + L G+ T
Sbjct: 121 VLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 177
Query: 698 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
V + P I++ LT L VKPAR G S G++++ EDL +KA
Sbjct: 178 VVVGPHAWKRDPEAILEACRSLTYP-----LFVKPARAGSSLGISKVDRPEDLAGAIKA- 231
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
+RA P++L+ V + + Q +A R+ G
Sbjct: 232 ------------ARAVD--------PKVLVESGIVGREVEVAVLQGRGDDAPRVAEPG-- 269
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL- 874
EI + + +G+ E K+ + + P AL
Sbjct: 270 ---EIAMD---------------ASQGAGEFYDYETKYLAHDAVAMVCPARIDPEARALL 311
Query: 875 -DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
D + E AL EG +R+D F+ + GE ++ E+NT+PG TP +
Sbjct: 312 MDTAARAFE----ALGCEGLARVDFFLT-EAGEAVVNEINTMPGFTPFS----------- 355
Query: 934 PMYPHQF 940
MYP+ +
Sbjct: 356 -MYPYMW 361
>gi|296119642|ref|ZP_06838200.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM
20306]
gi|295967525|gb|EFG80792.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM
20306]
Length = 358
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 50/389 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-------LNAYAISSAQV 131
RV +I GG S E +S +A +++ H+ + + I + I ++
Sbjct: 6 RVAVIYGGKSTEHSVSCVTAGAIMSHLDPERYEIIPIAITKEGTWTIGVTEGLEIKDGKL 65
Query: 132 YSNTPADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
AD + + +G G + L A++D+VFP +HG GEDG +Q V E +
Sbjct: 66 PEVEEAD-ELTVSLNPRGDGQIHNVTRGTLHADIDVVFPALHGVNGEDGTVQGVFEMAGI 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG-SEVNESELSNWFVTNKLDPNS 249
P+VGTG + DK M +G +L+G +E+ ++E + +
Sbjct: 125 PYVGTGVMSSAVCMDKEFMRKLMVAEGLPVTRDVILRGRTELTDAEKDHLGL-------- 176
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V VKP R GSSIGV+ D L A DD+V+VE L G +V
Sbjct: 177 -PVFVKPARGGSSIGVS-KVNTWDELPAAI-AEAAAFDDKVIVEAELVGA--------EV 225
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +P L V + G+ D E + + KYL V P F +
Sbjct: 226 EVGVLEYPTGELVASVPAKLNGTEDSDE--GFYGFDTKYL-DNTVTATIPAPFDEATTKA 282
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+++ A FQ L +R+D +F+ TE G ++ +IN + G
Sbjct: 283 LQDLAVETFQALNCEGLSRVD-FFV----------------TEQGPMI-NEINTLPGFTP 324
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSR 458
S Q G S+ +L T+I A ++
Sbjct: 325 ISMYPQVFLASGVSYPELLDTLIATALAK 353
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 121/317 (38%), Gaps = 97/317 (30%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-------VATSLALNHLADL 690
VF A+HG GEDGT+Q + E G+PY G GVM+S CMDK VA L + L
Sbjct: 101 VFPALHGVNGEDGTVQGVFEMAGIPYVGTGVMSSAVCMDKEFMRKLMVAEGLPVTRDVIL 160
Query: 691 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
T D + D L P+ VKPAR G S GV+++
Sbjct: 161 RGRTELTDAEK--DHLGLPVF----------------VKPARGGSSIGVSKV-------- 194
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810
N++ E+P E F+ D+++
Sbjct: 195 --------------NTWD------ELPAAIAEAAAFD-------------------DKVI 215
Query: 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD------ILSLEEKFQGGTGINLTPP 864
+ E+ VGV+ L+ SV K +G + K+ T P
Sbjct: 216 VEAELVGAEVEVGVLEY--PTGELVASVPAKLNGTEDSDEGFYGFDTKYLDNTVTATIPA 273
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
P +T+AL +E AL EG SR+D FV + G +I E+NT+PG TP +
Sbjct: 274 PFDEATTKALQDLA--VETF-QALNCEGLSRVDFFVT-EQGP-MINEINTLPGFTPIS-- 326
Query: 925 IHQALSEQPPMYPHQFF 941
MYP F
Sbjct: 327 ----------MYPQVFL 333
>gi|407363838|ref|ZP_11110370.1| D-alanyl-alanine synthetase A [Pseudomonas mandelii JR-1]
Length = 364
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 162/406 (39%), Gaps = 81/406 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I GG SAE +SL SA++++D + ID+ + N P+
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSAKNIVDALDRSRFEPVLIGIDKQ--------GHWHLNDPS 55
Query: 138 DFDFKLES------------LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGG 180
+F E+ LA G S+ ++ + +VD++FP +HG GEDG
Sbjct: 56 NFLLNQENPALIALNQSNRELAVVPGKASQQLVETSSQEMLGHVDVIFPIVHGTLGEDGC 115
Query: 181 IQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
+Q +L ++PFVG+ GS C DK + + G P L + + +
Sbjct: 116 LQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGIAVTPFVTLTRASAARTGFA 172
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFL 296
V KL + VKP GSS+GV+ V D + + L G D++V++E +
Sbjct: 173 E--VQAKLGL---PLFVKPANQGSSVGVS---KVSDEAEYTAAVELALGFDEKVLIESAV 224
Query: 297 EGGSEFTAIVLD----VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
G E VL + SG C +V+ + ++Y KY+ Q
Sbjct: 225 N-GREIECAVLGNEDAIASG--CGEIVV-----------------RSGFYSYDSKYIDAQ 264
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
P IR A FQ LG AR+D + T+
Sbjct: 265 AAEVVVPANISSEASERIRALAVEAFQVLGCSGLARVDVFL-----------------TD 307
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G + S + G ++S ++ +I A +
Sbjct: 308 SGEVLINEINSLPGFTRISMYPKLWQATGMTYSELVSRLIDLALEK 353
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 109/471 (23%), Positives = 179/471 (38%), Gaps = 136/471 (28%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P +A+ Q+V + + H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQEMLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 720
S CMDK I+K + R + TP V + + E+ +K
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGIAVTPFVTLTRASAARTGFAEVQAK 177
Query: 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
L L VKPA G S GV+++ D Y A+E L F
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKVS---DEAEYTAAVELAL------GF------------- 214
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
DE + + N EI V+G ++ S + V
Sbjct: 215 ------------DEKVLIESAVNGR-------------EIECAVLGNEDAIASGCGEIVV 249
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 900
+ S + K+ + P +S+EA ++ + L G +R+D F+
Sbjct: 250 RSG--FYSYDSKYIDAQAAEVVVPAN--ISSEASERIRALAVEAFQVLGCSGLARVDVFL 305
Query: 901 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D+GEVLI E+N++PG T + ++ L + M + +++DL E+
Sbjct: 306 T-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVSRLIDLALEK 353
>gi|357041342|ref|ZP_09103119.1| D-alanine--D-alanine ligase [Desulfotomaculum gibsoniae DSM 7213]
gi|355355434|gb|EHG03252.1| D-alanine--D-alanine ligase [Desulfotomaculum gibsoniae DSM 7213]
Length = 351
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 153/343 (44%), Gaps = 38/343 (11%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSAQVYSNT 135
+V ++ GG S E +SL SA SV+ ++ + I R L Y S ++ ++T
Sbjct: 7 KVAVLFGGCSTEYEVSLQSAYSVITNLNPNKYETILIGITRQGAWLRYYG-SLEKIQNDT 65
Query: 136 PADFDFKLESLA---QGFGSLSEFAEH--LAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
D + + ++ + L EF + +A +D+ FP +HG+ GEDG +Q +L +
Sbjct: 66 WMDSNDCVPAIISPDRNIHGLLEFRGNKVIATRIDVAFPVLHGKNGEDGTLQGLLTIAGI 125
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
PF G G+ DK A + G T PS +L+ S ++EL ++ +
Sbjct: 126 PFAGCGTLCSAMCMDKDIAHKIANLAGIKTPPSVVLR-SGFTDAEL-----MKQISYLTF 179
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP AGSS G+T D L A + + D++V++E +
Sbjct: 180 PLFVKPANAGSSFGITKVLQK-DELSDAVTVAFQH-DNKVIIE--------------EAV 223
Query: 311 SGFDCHPVVLLPTEVELQFQGSVD-VREKDAIFNYRRKY-LPTQQVAYHTPPRFPIVVIN 368
GF+ VL + + G VD + F+Y KY L T ++ H P R
Sbjct: 224 DGFEVGCAVLGNDSLAI---GEVDEIELSHGFFDYTEKYTLKTSKI--HMPARIDPDTAE 278
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
I++ AS++++ L FAR+D + P +F+ T G T
Sbjct: 279 RIKQTASVIYRALDCSGFARVDLFLTPEKEIIFNEVNTIPGFT 321
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG GEDGTLQ LL G+P+ G G + S CMDK + +A+L +
Sbjct: 103 FPVLHGKNGEDGTLQGLLTIAGIPFAGCGTLCSAMCMDKDIA----HKIANLAGIKTPPS 158
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLT 749
V +L++ D EL ++ T L VKPA G S G+ ++ ++L+
Sbjct: 159 V-----VLRSGFTD--AELMKQISYLTFPLFVKPANAGSSFGITKVLQKDELS 204
>gi|395651467|ref|ZP_10439317.1| D-alanyl-alanine synthetase A [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 364
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 164/394 (41%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
+RVG+I GG SAE +SL SAR+++D + ID+ + + ++ N
Sbjct: 4 VRVGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKAGHWHLNDTSNFLINQEN 63
Query: 136 PADFDFKLES--LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA + LA G S+ + L ++D++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNQSNRELAVVPGKASQQVVETSGQSLLQHIDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK D S + + I V F+ N + S KL
Sbjct: 124 DLPFVGSDVLGSAVC---MDK-DVSKRLLRDAGIAVTPFITLNRR-NAARTSFDMAVGKL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTA 304
+ VKP GSS+GV+ V D + + L G D++V+VE + G E
Sbjct: 179 GL---PMFVKPANQGSSVGVS---KVNDEAEYHAAVELALGFDEKVLVESAVR-GREIEC 231
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G D +P+ G ++ ++Y KY+ Q P +
Sbjct: 232 AVL----GND-NPIA----------SGCGEIVVGSGFYSYDSKYIDDQAAQVVVPADISV 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
IR A F+ LG AR+D + T+ G +L +IN +
Sbjct: 277 EASERIRRLAIEAFEVLGCAGLARVDVFL-----------------TDDGEVLINEINSL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G S+S ++ +I A R
Sbjct: 320 PGFTRISMYPKLWQAAGMSYSELVSRLIELALER 353
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 103/466 (22%), Positives = 173/466 (37%), Gaps = 126/466 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRTRFEPVLIG--IDKAGHWHLNDT---SNF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A+ QVV + L +H D
Sbjct: 58 LINQENPALIALNQSNREL------AVVPGKAS------QQVVETSGQSLLQH-----ID 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 725
CMDK ++K + R + TP + + ++
Sbjct: 138 CMDK----------------DVSKRLLRDAGIAVTPFITLNRRNAARTSFDMAVGKLGLP 181
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
+ VKPA G S GV+++ N + H +E+ E ++
Sbjct: 182 MFVKPANQGSSVGVSKV----------------------NDEAEYHAAVELALGFDEKVL 219
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
E V R EI V+G + S + V
Sbjct: 220 VESAV-------------------------RGREIECAVLGNDNPIASGCGEIVVGSG-- 252
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
S + K+ + P + +S EA ++ ++ L G +R+D F+ D+G
Sbjct: 253 FYSYDSKYIDDQAAQVVVP--ADISVEASERIRRLAIEAFEVLGCAGLARVDVFLT-DDG 309
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
EVLI E+N++PG T + ++ L + M + ++++L ER
Sbjct: 310 EVLINEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIELALER 353
>gi|420262045|ref|ZP_14764688.1| VanC4 [Enterococcus sp. C1]
gi|394771067|gb|EJF50851.1| VanC4 [Enterococcus sp. C1]
Length = 350
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 163/392 (41%), Gaps = 70/392 (17%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQG--DDLLVRCYYIDRNLNAYAISSAQVYSNTP 136
++ +I GG S E +SL SA S ++ +Q DD + I + + + + ++ N
Sbjct: 3 KIAIIFGGNSPEYAVSLASATSAIEALQSSPDDYDLSLIGIAPDAMDWYLYTGEL-ENIR 61
Query: 137 AD-------FDFKLESLAQGFGS-LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
D K++ L +G G LSE + L D++FP +HG++GEDG IQ + E
Sbjct: 62 QDTWLLDTKHKQKIQPLFEGNGFWLSEAQQTLVP--DVLFPIMHGKYGEDGSIQGLFELM 119
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
+P+VG G A +K+ + G + P+ LL + + ++ + T+
Sbjct: 120 KLPYVGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQDNQQQQIEAFIQTHGF--- 176
Query: 249 SGKVVVKPTRAGSSIGVT-------VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
V KP AGSS G+T +A + ++ ++L+ V + + G
Sbjct: 177 --PVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDS 234
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY-LPTQQVAYHTPP 360
T VG+ C + L+ + F++ KY L + ++ P
Sbjct: 235 LT-----VGA---CDAISLV-----------------EGFFDFEEKYQLISAKIT--VPA 267
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
P + ++E A LL+ LGL ARID + T+ G + +
Sbjct: 268 PLPETIETKVKEQAQLLYHSLGLKGLARID-----------------FFVTDQGELYLNE 310
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTII 452
IN + G S + +G S+ +L+ ++
Sbjct: 311 INTMPGFTSHSRYPAMMAAIGLSYQELLQKLL 342
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 97/434 (22%), Positives = 163/434 (37%), Gaps = 121/434 (27%)
Query: 491 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPD 550
++++ +IFGG++ E VSL S T S ++A + PD
Sbjct: 1 MKKIAIIFGGNSPEYAVSLASAT--------------------------SAIEALQSSPD 34
Query: 551 SSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFT 610
Y L L + + D +T L N +++ +W
Sbjct: 35 D---------YDLSLIGIAPDAM---------DWYLYTGELEN---------IRQDTWLL 67
Query: 611 GFDIADEL-PMRHSINEWIKLAKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPG 667
++ P+ W+ A++ +F +HG GEDG++Q L E +PY G G
Sbjct: 68 DTKHKQKIQPLFEGNGFWLSEAQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPYVGCG 127
Query: 668 VMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 727
V AS CM+K L H A + V+ +L T + ++ + +Q
Sbjct: 128 VAASALCMNK-----WLLHQAAAAI-----GVQSAPTILLTNQDNQQQQIEAFIQTHGFP 177
Query: 728 V--KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
V KP G S G+ ++ C E++ +K
Sbjct: 178 VFFKPNEAGSSKGITKVTCVEEIAPALK-------------------------------- 205
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
E F +L + N VEI G++G ++++ E
Sbjct: 206 -EAFAYCSAVLL--------------QKNIAGVEIGCGILGNDSLTVGACDAISLVEG-- 248
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
EEK+Q + P P + K K++ +L+ ++L L+G +RID FV D G
Sbjct: 249 FFDFEEKYQLISAKITVPAP---LPETIETKVKEQAQLLYHSLGLKGLARIDFFVT-DQG 304
Query: 906 EVLIIEVNTVPGMT 919
E+ + E+NT+PG T
Sbjct: 305 ELYLNEINTMPGFT 318
>gi|392329581|ref|ZP_10274197.1| D-alanyl-alanine synthetase A [Streptococcus canis FSL Z3-227]
gi|391419453|gb|EIQ82264.1| D-alanyl-alanine synthetase A [Streptococcus canis FSL Z3-227]
Length = 348
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 153/342 (44%), Gaps = 48/342 (14%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + ++ ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFLERPAATERLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D +++ S+ + A +VFP +HG GEDG IQ LE +P+V
Sbjct: 68 NETIQLDQQIKP--------SDIYDDKA----VVFPVLHGPMGEDGSIQGFLEVLGMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
GT + A DK + G V + + G ++ +T L S +
Sbjct: 116 GTNILSSSVAMDKITTKRVLESAGIPQVAYTVYIDGQDLEAC------LTKTLATLSFPI 169
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
VKP GSS+G++ A + LK+A + L D RV++E A ++VG
Sbjct: 170 FVKPANMGSSVGISKAQTKAE-LKEAIQLALT-YDSRVLIE------QGVVAREIEVG-- 219
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+L TEV+ G V V++ D ++Y+ KY+ ++ P ++ ++R
Sbjct: 220 ------LLGNTEVKSTLPGEV-VKDVD-FYDYQAKYI-DNKITMAIPAEIDPEIMATMRV 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
A F+ LG C +R D +FL V+ + T G T+W
Sbjct: 271 YAESAFKALGGCGLSRCD-FFLSQDGQVYLNELNTMPGFTQW 311
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 621 RHSINEWIKLAKE--------NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
R NE I+L ++ ++A VF +HG +GEDG++Q LE G+PY G +++S
Sbjct: 64 RLMTNETIQLDQQIKPSDIYDDKAVVFPVLHGPMGEDGSIQGFLEVLGMPYVGTNILSSS 123
Query: 673 TCMDKVATSLALNHLADLGV-LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
MDK+ T L V T+ D + E L + + + VKPA
Sbjct: 124 VAMDKITTKRVLESAGIPQVAYTVYIDGQDLEACLTKTLATLSF---------PIFVKPA 174
Query: 732 RDGCSTGVAR 741
G S G+++
Sbjct: 175 NMGSSVGISK 184
>gi|377809431|ref|YP_005004652.1| D-alanine--D-alanine ligase [Pediococcus claussenii ATCC BAA-344]
gi|361056172|gb|AEV94976.1| D-alanine--D-alanine ligase family protein [Pediococcus claussenii
ATCC BAA-344]
Length = 351
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 172/401 (42%), Gaps = 66/401 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHI--QGDDLLVRCYYIDRNLNAY-AISSAQVYSN 134
+++ ++ GG S ER +SL+S + + + +G + ++ L +I +SN
Sbjct: 1 MKIAVLAGGKSTERNVSLSSGSKITNALRAKGHQATMIDLFLGYELGEQESIEDVFEHSN 60
Query: 135 TPADFDFKLESLAQGF-------GSLSEFAEH---LAANVDIVFPTIHGRFGEDGGIQEV 184
T D++ E L G++ F ++ +A DIVF +HG GE+G IQ V
Sbjct: 61 TTTDYEISDEVLTDAAIEKLRTDGTVGLFGKNVLDIARASDIVFLALHGGDGENGKIQAV 120
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
L+ N+ + G+G+ A A DK + M G T +++ + EL +
Sbjct: 121 LDLNNIRYTGSGTLAAGMAMDKAISKEIMLFNGIKTARFAIMKADDEEAPELDFGY---- 176
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEF 302
+VVKP GSS+G ++ + ++ K + EG D+ +++E F+ G EF
Sbjct: 177 ------PMVVKPNSGGSSVGAM----IVQNDQEFKSALQEGFKFDEELIIEEFVS-GREF 225
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
+ L V +G+ LP ++++ D ++Y K+ + TPP
Sbjct: 226 S---LGVVNGY------ALP---------AIEIVVNDGWYDYEHKFQTGSTTQFITPPDI 267
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
V N ++ + + L + ++ RID FL + + V+ + N
Sbjct: 268 DDDVHNEMKRLSVATMEALQMENYGRID--FLVNDSGVY----------------VIEAN 309
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463
+ GM S + Q+A G S+ ++ I+ + + A
Sbjct: 310 TLPGMTPLSLMPQEAEADGLSYEDLCDQIVAGKMKIYEDRA 350
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 123/292 (42%), Gaps = 71/292 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHLADLGVLTIN 696
VF+A+HGG GE+G +Q++L+ + YTG G +A+ MDK ++ + L + G+ T
Sbjct: 103 VFLALHGGDGENGKIQAVLDLNNIRYTGSGTLAAGMAMDKAISKEIMLFN----GIKTAR 158
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ + +D + P +D + + VKP G S G ++ + AL+
Sbjct: 159 FAIMKADDE-EAPELDFGY---------PMVVKPNSGGSSVGA---MIVQNDQEFKSALQ 205
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
E E LI E FV
Sbjct: 206 EGF-------------------KFDEELIIEEFV-------------------------S 221
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
E ++GV+ +P++ + + E KFQ G+ PP + + ++
Sbjct: 222 GREFSLGVVNGYA-----LPAIEIVVNDGWYDYEHKFQTGSTTQFITPPD--IDDDVHNE 274
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
K+ ALQ+E + RID VN D+G V +IE NT+PGMTP +++ +A
Sbjct: 275 MKRLSVATMEALQMENYGRIDFLVN-DSG-VYVIEANTLPGMTPLSLMPQEA 324
>gi|387890225|ref|YP_006320523.1| D-alanine--D-alanine ligase [Escherichia blattae DSM 4481]
gi|414594711|ref|ZP_11444346.1| D-alanine--D-alanine ligase [Escherichia blattae NBRC 105725]
gi|386925058|gb|AFJ48012.1| D-alanine--D-alanine ligase A [Escherichia blattae DSM 4481]
gi|403194448|dbj|GAB81998.1| D-alanine--D-alanine ligase [Escherichia blattae NBRC 105725]
Length = 366
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 153/373 (41%), Gaps = 48/373 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG++ GG SAE +SL SA++++D I V ID+ + I+ Y A
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTKFDVVLLGIDKQ-GQWHINDEHNYLLNAA 62
Query: 138 D-----FDFKLESLA----QGFGSLSEF-AEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
D + +LA Q G L + A +D+VFP +HG GEDG +Q +L
Sbjct: 63 DPARIALNHSGVNLAVTPGQQHGQLIDARAASPLPQLDVVFPIVHGTLGEDGSLQGMLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N+PFVG+G + DK A + G P L S ++ + T +
Sbjct: 123 ANLPFVGSGVLGSAVSMDKDVAKRLLRDAGLNVAPFVTLTRSNRDKYHFAELAETLGV-- 180
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+GV+ V + + + + L D +VVVE + G E +
Sbjct: 181 ---PLFVKPANQGSSVGVS---KVTTAAQYQEAVALAFRFDTKVVVEKGIT-GREIECAI 233
Query: 307 L--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L D C +V+ ++Y KY+ + P P
Sbjct: 234 LGNDDPQASTCGEIVI-----------------NSDFYSYDTKYIDDKGAQVVVPADLPR 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ + IR A +Q L +R+D + P + + + T G FT+I++
Sbjct: 277 EINDKIRAIAIRAYQALECSGMSRVDVFLTPENEVIINEINTLPG--------FTNISMY 328
Query: 425 SGMEQTSFLFQQA 437
+ Q S + QA
Sbjct: 329 PKLWQASGIGYQA 341
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 103/259 (39%), Gaps = 70/259 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V ++FGG ++E +VSL S N+ + A + + LL G+D
Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNI---VDAIDKTKFDVVLL--------GID---------K 45
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ W H +E + A +P R A L + VN V ++H
Sbjct: 46 QGQW---------HINDE-HNYLLNAADPARIA----LNHSGVNLAVTPGQQHGQLIDAR 91
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
A LP VF VHG +GEDG+LQ +L +P+ G GV+ S
Sbjct: 92 AASPLPQLD--------------VVFPIVHGTLGEDGSLQGMLRMANLPFVGSGVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGV-----LTINKDVRRKEDLLKTPIVDIWH--ELTSKLQCKTL 726
MDK +A L D G+ +T+ + R K +H EL L L
Sbjct: 138 SMDK---DVAKRLLRDAGLNVAPFVTLTRSNRDK-----------YHFAELAETLGVP-L 182
Query: 727 CVKPARDGCSTGVARLCCA 745
VKPA G S GV+++ A
Sbjct: 183 FVKPANQGSSVGVSKVTTA 201
>gi|311280731|ref|YP_003942962.1| D-alanine--D-alanine ligase [Enterobacter cloacae SCF1]
gi|308749926|gb|ADO49678.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
Length = 366
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 160/372 (43%), Gaps = 54/372 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG S+E +SL SA+++++ + V ID+ + I+ A Y +
Sbjct: 4 LRVGVVFGGKSSEHEVSLQSAKNIVEAMDKTRFDVVLLGIDKQ-GQWHINDASNYLLNDH 62
Query: 135 TPADFDFKLE--SLAQGFGSLSE------FAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA + +LAQ G S+ + L A +D++FP +HG GEDG +Q +L
Sbjct: 63 DPAHIALRPSDVTLAQIPGKESQQLINADSGQPLPA-IDVIFPIVHGTLGEDGSLQGMLR 121
Query: 187 KYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG+ GS AC DK D + + + +++ F+ + N ++ V+
Sbjct: 122 MANLPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLSIAPFITL-TRANRERVTFAEVSE 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ ++A + E D +VVVE + G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVKNEA-QYQQAVALAFE-FDHKVVVEQGII-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL D C +VL + Y KY+ P
Sbjct: 231 CAVLGNDEPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPAD 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR A +Q LG AR+D + P + V + T G FT+I
Sbjct: 274 ISPAINDKIRAIAIQAYQTLGCSGMARVDVFLTPENDVVINEINTLPG--------FTNI 325
Query: 422 NLISGMEQTSFL 433
++ + Q S L
Sbjct: 326 SMYPKLWQASGL 337
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L L+ +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+ + R + + E++ KL L VKPA G S GV+++
Sbjct: 161 LTRANRERV---------TFAEVSEKLGLP-LFVKPANQGSSVGVSKV 198
>gi|281490888|ref|YP_003352868.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis
KF147]
gi|281374646|gb|ADA64166.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis
KF147]
Length = 349
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 166/383 (43%), Gaps = 54/383 (14%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + +V+ Y+I + Q +++ PA+ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGE---FIKTQEFTDKPAEEEK 64
Query: 142 KL-ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
L LA+ + +S A + +VFP +HG GEDG IQ LE + +VG +
Sbjct: 65 LLTNDLAESYPKISPAA--IYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSA 122
Query: 201 RQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
DK A G VP ++ ++ N+ E++ V P V VKP G
Sbjct: 123 SSTMDKLLAKHVFEAVGVPQVP-YVAAFADENQGEIAQEVVEKLEFP----VFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
SS+G++ +D L + + E D+RVV+E ++ E VL G+ D
Sbjct: 178 SSVGIS----KVDDLADLQPALSEAYKYDNRVVIEQGVD-AREIECAVL--GNNSDVSAT 230
Query: 319 VLLPTEV--ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV +++F ++Y KY+ ++ P + P + ++E A
Sbjct: 231 --LPGEVVKDVEF------------YDYNSKYI-DNKIQMDIPAKVPADLAQKMQEYAIK 275
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
++ + +R D +F+ T+ G + +IN I G Q S
Sbjct: 276 AYKAVNGTGLSRCD-FFV----------------TKDGNVYLNEINAIPGFTQWSMYPLL 318
Query: 437 ASKVGFSHSNILRTIIGHACSRF 459
+G S+S+++ ++ A F
Sbjct: 319 WENMGLSYSDLIEKLVDLAKETF 341
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 125/324 (38%), Gaps = 70/324 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE + Y GP ++++ + MDK+ LA + +GV
Sbjct: 84 EKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMDKL---LAKHVFEAVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ ++ +I E+ KL+ VKPA G S G++++ +DL
Sbjct: 141 PQVPYVAAFADENQG----EIAQEVVEKLEFPVF-VKPANMGSSVGISKV---DDLADLQ 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
AL E K +R++ +
Sbjct: 193 PALSEAY--------------------------------------------KYDNRVVIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVK--ESGDILS--LEEKFQGGTGINLTPPPASI 868
EI V+G + + +P VK E D S ++ K Q + A
Sbjct: 209 QGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYNSKYIDNKIQMDIPAKVPADLAQK 268
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
M A+ K A+ G SR D FV D G V + E+N +PG T + ++
Sbjct: 269 MQEYAIKAYK--------AVNGTGLSRCDFFVTKD-GNVYLNEINAIPGFTQWS--MYPL 317
Query: 929 LSEQPPMYPHQFFRKVLDLGSERF 952
L E + K++DL E F
Sbjct: 318 LWENMGLSYSDLIEKLVDLAKETF 341
>gi|160896919|ref|YP_001562501.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
gi|229485953|sp|A9BUK8.1|DDL_DELAS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|160362503|gb|ABX34116.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
Length = 326
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 145/377 (38%), Gaps = 77/377 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S VL + + ++A+A PA+
Sbjct: 15 KVAVLLGGRSAEREVSLMSGTGVLKAL-----------LSHGVDAHAFD--------PAE 55
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D E +GF D F +HGR+GEDG +Q LE +P+ G G
Sbjct: 56 RDLG-ELKKEGF--------------DRCFIALHGRYGEDGTVQGALELLGIPYTGPGVM 100
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK +G T P + L S E+ + L ++VKP+R
Sbjct: 101 ASSIAMDKIMTKRIWRFEGLPT-PDWRLVAS-AGETRAA-------LQALGAPMIVKPSR 151
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS+IG+T + + +A ++ D V+ E F+E G E T VL G G PV
Sbjct: 152 EGSTIGLTKVW-TAEECDQAY-VLASRYDPEVLCEEFIE-GDETTCPVLGTGEGAHALPV 208
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+ + + ++Y+ KY T YH P P IR F
Sbjct: 209 --------------IRIVAPEGNYDYQNKYF-TDDTKYHCPSGLPAEEEAEIRRIVVRAF 253
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG ++R D S F +IN GM S + A
Sbjct: 254 RTLGCRGWSRADIMIRASDRKPF----------------LLEINTSPGMTGHSLVPMSAR 297
Query: 439 KVGFSHSNILRTIIGHA 455
+G S+ N+ I+ A
Sbjct: 298 AIGVSYENLCLGILASA 314
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 124/298 (41%), Gaps = 77/298 (25%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L KE FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELKKEGFDRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 111
Query: 689 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 743
K + R E L TP +V E + LQ + VKP+R+G + G+ ++
Sbjct: 112 --------KRIWRFEG-LPTPDWRLVASAGETRAALQALGAPMIVKPSREGSTIGLTKVW 162
Query: 744 CAEDL-TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 802
AE+ YV A SR PE+L E F+E D
Sbjct: 163 TAEECDQAYVLA-------------SRYD---------PEVLC-EEFIEGD--------- 190
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
E T V+G H+L V G+ + F T +
Sbjct: 191 ----------------ETTCPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHC- 233
Query: 863 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
P+ + + E + +RI + A L G+SR D + + + ++E+NT PGMT
Sbjct: 234 --PSGLPAEEEAE--IRRIVVRAFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMT 287
>gi|170722835|ref|YP_001750523.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
gi|169760838|gb|ACA74154.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
Length = 364
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 160/396 (40%), Gaps = 74/396 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ L+ GG S+E ++L SA + + V C IDR + Y P F
Sbjct: 6 IALVFGGRSSEHSVALRSASMIHAALMALGHRVHCVGIDRE-------GSWRYQGEPCQF 58
Query: 140 DFKLE------SLAQGFGSLS---EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+++ S+ G SLS + ++ + +D++FP +HGR+GEDG IQ + +
Sbjct: 59 PGEVDRSAPLISIRPGHPSLSYTTQGSDTVEIAIDLLFPALHGRWGEDGTIQGLAAMCGL 118
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP--- 247
P VG+G + DK + G + P W N + P
Sbjct: 119 PCVGSGVLGSAMSMDKDVTKRMLQSSGLVVGP----------------WRAMNFMRPWEE 162
Query: 248 -----NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD-RVVVELFLEGGSE 301
S + VKP +GSSIGV+ V ++L+ A+ + D +V+VE + G E
Sbjct: 163 LVECLGSSTLFVKPANSGSSIGVS---KVSNALEYAEAFAIAACQDAKVLVEAEI-CGRE 218
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL++ G V G + +E A ++Y+ KY P
Sbjct: 219 IECGVLELEEGLIASVV------------GEILKKEGQAYYDYQAKYDSKSGADIRVPSL 266
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
++ I++ + F+ L L +AR+D +FL TE G I+ ++
Sbjct: 267 LAPDIVERIQDLSVQAFRCLELKGYARVD-FFL----------------TEDGAIILNEV 309
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
N + G +S + G+ ++ ++ +A S
Sbjct: 310 NTLPGFTGSSMYPKMFECSGYPPEKLVGALVEYALS 345
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 127/304 (41%), Gaps = 74/304 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F A+HG GEDGT+Q L G+P G GV+ S MDK T L L +
Sbjct: 95 LFPALHGRWGEDGTIQGLAAMCGLPCVGSGVLGSAMSMDKDVTKRMLQSSG----LVVGP 150
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R + ++ W EL L TL VKPA G S GV+++ ALE
Sbjct: 151 --WRAMNFMRP-----WEELVECLGSSTLFVKPANSGSSIGVSKVS---------NALE- 193
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
++ A + + ++L ++ +
Sbjct: 194 ---------YAEAFAIAA--------------CQDAKVLVEAEICGR------------- 217
Query: 818 VEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI GV+ + G + S++ + KE + K+ +G ++ P S+++ + +++
Sbjct: 218 -EIECGVLELEEGLIASVVGEILKKEGQAYYDYQAKYDSKSGADIRVP--SLLAPDIVER 274
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 936
+ L+L+G++R+D F+ ++G +++ EVNT+PG T S+ MY
Sbjct: 275 IQDLSVQAFRCLELKGYARVDFFLT-EDGAIILNEVNTLPGFTGSS------------MY 321
Query: 937 PHQF 940
P F
Sbjct: 322 PKMF 325
>gi|166198508|sp|Q1JG50.1|DDL_STRPD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|94544246|gb|ABF34294.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10270]
Length = 348
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 169/389 (43%), Gaps = 55/389 (14%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + + + Q +S P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQ-MGQFI--KTQQFSEKPSESER 64
Query: 142 KLES----LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ + L Q S+ E A +VFP +HG GEDG IQ LE +P++GT
Sbjct: 65 LMTNETIELTQKIKP-SDIYEEGA----VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNV 119
Query: 198 RACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
+ A DK + G V + + G ++ + L + + VKP
Sbjct: 120 MSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEAC------LVETLARLTFPIFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A ++ L+KA + L D RV++E A ++VG +
Sbjct: 174 ANMGSSVGISKAQTKVE-LRKAIQLALT-YDSRVLIE------QGVVAREIEVGLLGNDK 225
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV +++ D ++Y+ KY+ ++ P ++ +R A +
Sbjct: 226 VKSTLPGEV---------IKDVD-FYDYQAKYVDN-KITMAIPADVDQSIVTEMRSYAEV 274
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F+ LG C +R D +FL T+ G + ++N + G Q S
Sbjct: 275 AFKALGGCGLSRCD-FFL----------------TQDGQVYLNELNTMPGFTQWSMYPLL 317
Query: 437 ASKVGFSHSNILRTIIGHACSRFPNLASY 465
+G ++ +++ ++ A F S+
Sbjct: 318 WENMGLAYPDLIEVLVTLAQEMFDQRESH 346
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 69/307 (22%)
Query: 621 RHSINEWIKLAK--------ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
R NE I+L + E A VF +HG +GEDG++Q LE +PY G VM+S
Sbjct: 64 RLMTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSS 123
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
MDK+ T L +G+ + V L+ +V+ LT + VKPA
Sbjct: 124 IAMDKITTKRVLES---IGIPQVAYTVYIDGQDLEACLVETLARLTFP-----IFVKPAN 175
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S G+ S+A +E+ L ++
Sbjct: 176 MGSSVGI----------------------------SKAQTKVELRKAIQLALTYD----- 202
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
R++ + EI VG++G + S +P +K+ D + K
Sbjct: 203 --------------SRVLIEQGVVAREIEVGLLGN-DKVKSTLPGEVIKDV-DFYDYQAK 246
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
+ I + P + + + + + E+ AL G SR D F+ D G+V + E+
Sbjct: 247 YVDNK-ITMAIP--ADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLTQD-GQVYLNEL 302
Query: 913 NTVPGMT 919
NT+PG T
Sbjct: 303 NTMPGFT 309
>gi|375094006|ref|ZP_09740271.1| D-alanine--D-alanine ligase [Saccharomonospora marina XMU15]
gi|374654739|gb|EHR49572.1| D-alanine--D-alanine ligase [Saccharomonospora marina XMU15]
Length = 365
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 165/400 (41%), Gaps = 52/400 (13%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS-- 133
R RV ++ GG S E IS SA SVL ++ V I R + + ++ +
Sbjct: 4 RKTRVAVVFGGRSTEHTISCVSAGSVLANLDPQRFEVVPIGITRE-GGWVLGTSDPAALR 62
Query: 134 ----NTPADFDFKLESLA-----QGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQE 183
PA K LA +G SL E + VD+VFP +HG FGEDG IQ
Sbjct: 63 IQGKELPAVDGGKALVLAGDPTSKGLVSLEPGQEAEVLGGVDVVFPVLHGAFGEDGTIQG 122
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+LE +P+VG G A A DK A ++ +G ++ + E + +
Sbjct: 123 LLELAEIPYVGAGVLASAAAMDKEYAKKLLAAEGLPVGRYATIRRGQATLDEATRERLGL 182
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI-ILEGIDDRVVVELFLEGGSEF 302
V VKP RAGSSIG++ V D + + + + D +V+VE + G E
Sbjct: 183 -------PVFVKPARAGSSIGIS---KVTDYSRLDEAVAVARKTDPKVLVEAAVV-GREV 231
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL+ G LP E+ + +G +DA +++ KYL + P +
Sbjct: 232 ECGVLEFPDG---RVEASLPAEIRVLAEG------QDAWYDFETKYL-GEDAELDIPAKL 281
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
V +R A F+ L AR+D +F+ S G + ++N
Sbjct: 282 DDSVTERLRACAVRAFRALDCQGLARVD-FFVGSD----------------GELTINEVN 324
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+ G TS + + G + +L T++ A +R L
Sbjct: 325 TMPGFTTTSAYPKMWAVTGLDYPTLLSTLVETALARGTGL 364
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 115/297 (38%), Gaps = 81/297 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE +PY G GV+AS MDK A LA G L + +
Sbjct: 106 VFPVLHGAFGEDGTIQGLLELAEIPYVGAGVLASAAAMDK---EYAKKLLAAEG-LPVGR 161
Query: 698 --DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC----CAEDLTVY 751
+RR + L E T + + VKPAR G S G++++ E + V
Sbjct: 162 YATIRRGQATL--------DEATRERLGLPVFVKPARAGSSIGISKVTDYSRLDEAVAVA 213
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNP------PPEILIFEPFVETDEILFSSQSTNKN 805
K + L+ G++E P+ P EI
Sbjct: 214 RKTDPKVLVEAAVVGREVECGVLEFPDGRVEASLPAEI---------------------- 251
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
R++ +G W + +G+ + DI P
Sbjct: 252 --RVLAEGQDAWYDFETKYLGEDAEL-------------DI----------------PAK 280
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
TE L C R AL +G +R+D FV D GE+ I EVNT+PG T ++
Sbjct: 281 LDDSVTERLRACAVR---AFRALDCQGLARVDFFVGSD-GELTINEVNTMPGFTTTS 333
>gi|349611975|ref|ZP_08891204.1| D-alanine-D-alanine ligase [Lactobacillus sp. 7_1_47FAA]
gi|348608121|gb|EGY58107.1| D-alanine-D-alanine ligase [Lactobacillus sp. 7_1_47FAA]
Length = 360
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 164/401 (40%), Gaps = 71/401 (17%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ +RVGLI GG S+E +S+ S R++ I + V +I N ++S
Sbjct: 3 KKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWI---TNTGFLASDADSRKV 59
Query: 136 PADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D +++E+ ++S E +D+ FP +HG GEDG +Q +L + PFVG
Sbjct: 60 LEDPSYQIEN-PHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
A DK + + G +I++ F + ++ +LS +V+ KL +
Sbjct: 119 DDVLAAAITMDKELNKIMAQRAGVPVADWISIKRF--EYNDAKNEKLSYDYVSQKLGTD- 175
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVL 307
+ VKP+ GSS+G++ + S K + E DD+V+VE ++G
Sbjct: 176 --LFVKPSNQGSSVGIS----HVTSASDYKAALAEAFKYDDKVLVEETIKG--------- 220
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVD---------VREKDAIFNYRRKYLPTQQVAYHT 358
TEVE G+ D + + ++Y KY
Sbjct: 221 ---------------TEVETAVLGNDDAIVSGVGQITNAQGSWYSYENKYNDNSTSKLQI 265
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P P +I +R A ++ AR+D SS+ K ++F
Sbjct: 266 PAALPSEIIEMVRRQALKVYHATECSGLARVDSML---------SSDNK--------VIF 308
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G S + +VG S++ ++ ++ +A R+
Sbjct: 309 NELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYALDRY 349
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 66/319 (20%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LAD-LGVL 693
F VHG +GEDG LQ LL P+ G V+A+ MDK + +AD + +
Sbjct: 92 FPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAITMDKELNKIMAQRAGVPVADWISIK 151
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
+ + E L ++ S+ L VKP+ G S G++ + A D Y
Sbjct: 152 RFEYNDAKNEKLS--------YDYVSQKLGTDLFVKPSNQGSSVGISHVTSASD---YKA 200
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E K D+++ +
Sbjct: 201 ALAEAF--------------------------------------------KYDDKVLVEE 216
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
+ E+ V+G ++ S + +T G S E K+ + L P A + +E
Sbjct: 217 TIKGTEVETAVLGNDDAIVSGVGQIT-NAQGSWYSYENKYNDNSTSKLQIPAA--LPSEI 273
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
++ +++ + +A + G +R+D+ ++ DN +V+ E+N++PG T + ++ L EQ
Sbjct: 274 IEMVRRQALKVYHATECSGLARVDSMLSSDN-KVIFNELNSLPGFT--NISMYPKLFEQV 330
Query: 934 PMYPHQFFRKVLDLGSERF 952
+ + K+L+ +R+
Sbjct: 331 GISYTELITKLLNYALDRY 349
>gi|206900336|ref|YP_002250669.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
gi|206739439|gb|ACI18497.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
Length = 311
Score = 85.9 bits (211), Expect = 1e-13, Method: Composition-based stats.
Identities = 88/381 (23%), Positives = 163/381 (42%), Gaps = 83/381 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++G++ G S+E+ I+ +AR++++ ++ L Y Y P
Sbjct: 1 MKIGVLIGVKSSEKEIAFKTARNIVNALK--------------LKGYD------YIEIPI 40
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D E++ + AN+++ + HG++GEDG IQ +LE +P+VG+G
Sbjct: 41 D-----ENVVENIKK---------ANINVAIISAHGKYGEDGTIQGLLELLGIPYVGSGV 86
Query: 198 RACRQAFDKYDASLEMSKQGF----ITVPSFL-LQGSEVNESELSNWFVTNKLDPNSGKV 252
A A DK M+K+ F I P ++ L E+ +L+N + +
Sbjct: 87 LASALALDK-----TMAKKIFTFHNIPTPKWIELSKKELETKDLNN--IVKNVSKLKKPW 139
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGS 311
++KP GS+IG+++A + L KGI L D+ +++E +++ G E TA + D+ +
Sbjct: 140 IIKPATQGSTIGLSLASTEEELL---KGIELAFKYDENIIIEEYIK-GKEITAGIYDINN 195
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
C P+ +++ K ++Y KY P + P R P V +
Sbjct: 196 PV-CLPL--------------IEIIPKTGFYDYETKYTPGLS-DHIIPARLPKEVYEKAQ 239
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
L Q LG +R+D ++ H++ ++N I GM +TS
Sbjct: 240 GLGILAHQALGCRHLSRVDMIVEENTNHIY----------------VLEVNTIPGMTETS 283
Query: 432 FLFQQASKVGFSHSNILRTII 452
+ A G ++ + I
Sbjct: 284 LYPEAAKAFGIDFPELIDSFI 304
Score = 75.9 bits (185), Expect = 1e-10, Method: Composition-based stats.
Identities = 86/332 (25%), Positives = 140/332 (42%), Gaps = 68/332 (20%)
Query: 594 QVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQ 653
+ ++V LK G+D E+P+ ++ E IK A N A I+ HG GEDGT+Q
Sbjct: 19 KTARNIVNALK----LKGYDYI-EIPIDENVVENIKKANINVA--IISAHGKYGEDGTIQ 71
Query: 654 SLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTINKDVRRKEDLLKTPIV 711
LLE G+PY G GV+AS +DK +++ + ++K +DL IV
Sbjct: 72 GLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELETKDL--NNIV 129
Query: 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAH 771
+ SKL+ K +KPA G + G++ + + EE LL+
Sbjct: 130 ----KNVSKLK-KPWIIKPATQGSTIGLS-----------LASTEEELLK---------- 163
Query: 772 GMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 831
IE+ E +I E ++ KG EIT G+ +
Sbjct: 164 -GIELAFKYDENIIIEEYI---------------------KGK----EITAGIYDINNPV 197
Query: 832 HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 891
+P + + E K+ G ++ P + + E +K + L AL
Sbjct: 198 --CLPLIEIIPKTGFYDYETKYTPGLSDHIIP---ARLPKEVYEKAQGLGILAHQALGCR 252
Query: 892 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
SR+D V + + ++EVNT+PGMT +++
Sbjct: 253 HLSRVDMIVEENTNHIYVLEVNTIPGMTETSL 284
>gi|419814615|ref|ZP_14339387.1| D-alanyl-alanine synthetase A [Streptococcus sp. GMD2S]
gi|404471596|gb|EKA16102.1| D-alanyl-alanine synthetase A [Streptococcus sp. GMD2S]
Length = 347
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V +T + + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVTAK------ITEVEEKLTYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + D L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-DELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRRNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ +++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPDLIERLVDLAKQSF 339
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 115/287 (40%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ ++L
Sbjct: 140 AQVPYVAIVEGDDVTAKITEVEEKLTYP-----VFTKPSNMGSSVGISKSENQDELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ ++ E A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAVMRRNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 308
>gi|288556059|ref|YP_003427994.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
gi|288547219|gb|ADC51102.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
Length = 305
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 164/391 (41%), Gaps = 108/391 (27%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ--GDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+++ ++ GG SAER +SL+S + +++ ++ G +++ ++ DR
Sbjct: 1 MKIAVLYGGISAEREVSLSSGKGIINALKANGHEVIGIDFHPDR---------------- 44
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
LE L L VD+V+ +HGR+GEDG +Q +L+ N+ +VG+
Sbjct: 45 -------LEDL-------------LNLEVDLVYIGLHGRYGEDGKVQALLDMLNINYVGS 84
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK---- 251
G + A DK + L ++G +L + DP +
Sbjct: 85 GVQGSALAMDKAKSKLFFEREGTRIAKQHVL--------------YKHSYDPETTAIEIP 130
Query: 252 --VVVKPTRAGSSIGVTVAY-------GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
VVVKP + GS+IG+T A G+ ++ K +D+ V++E F++ G E
Sbjct: 131 FPVVVKPNQEGSTIGITFAENEEELLNGIEEAFK---------LDETVLLEEFIK-GREV 180
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
T V+ PV V++ K+ ++Y KY + P R
Sbjct: 181 TVAVMGNKGREKALPV--------------VEIVPKNKYYDYEAKYAAGMS-EHIVPARL 225
Query: 363 PIVVINSIREGASLLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ +++ A L Q LG CD ++R+D + +P + G + ++
Sbjct: 226 TSEQTDYVQKHAVLAHQALG-CDIYSRVD-FIVPD---------------DGGAPVILEV 268
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTII 452
N + GM TS A ++G S+ ++ T +
Sbjct: 269 NTLPGMTPTSLYPDAAREIGLSYDEMIETFV 299
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 120/287 (41%), Gaps = 64/287 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V+I +HG GEDG +Q+LL+ + Y G GV S MDK + L G +
Sbjct: 56 VYIGLHGRYGEDGKVQALLDMLNINYVGSGVQGSALAMDKAKSKLFFERE---GTRIAKQ 112
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V K + T+ ++ + VKP ++G + G+ AE+ E
Sbjct: 113 HVLYKHS---------YDPETTAIEIPFPVVVKPNQEGSTIGI---TFAEN--------E 152
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
E LL N A + E ++ E F+ KG
Sbjct: 153 EELL----NGIEEAFKL-------DETVLLEEFI---------------------KGR-- 178
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
E+TV V+G G +L P V + E K+ G ++ P + +++E D
Sbjct: 179 --EVTVAVMGNKGREKAL-PVVEIVPKNKYYDYEAKYAAGMSEHIVP---ARLTSEQTDY 232
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
++ L AL + +SR+D V D G +I+EVNT+PGMTP+++
Sbjct: 233 VQKHAVLAHQALGCDIYSRVDFIVPDDGGAPVILEVNTLPGMTPTSL 279
>gi|28572416|ref|NP_789196.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27]
gi|39930876|sp|Q83I36.1|DDL_TROW8 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|28410547|emb|CAD66933.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27]
Length = 347
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 169/387 (43%), Gaps = 64/387 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS--SAQVYSNT---- 135
L+ GG S E +S SAR++L+HI D+ V I ++ + S S Q Y
Sbjct: 6 LLFGGRSQEHSVSYASARALLEHI-CDEWTVIPVGITKHGDFVYCSTVSEQDYGEVIDNG 64
Query: 136 -----PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
P+ K + Q G S F E D+VFP +HG FGEDG IQ +L+ ++
Sbjct: 65 NRVVWPSRAGCKKIEVVQARGK-SFFVE-----FDLVFPLLHGVFGEDGTIQGMLDLLDI 118
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG+G A A DK+ + S G +P +L++G +++ S F+ D +
Sbjct: 119 PYVGSGVFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDS--FLKQISDRFTF 176
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID--DRVVVELFLEGGSEFTAIVLD 308
+ VKP AGSS G T +D ++ I + +VE L+ F +++ +
Sbjct: 177 PLFVKPVDAGSSFGCT----FVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIEN 232
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G C +V ++ GS ++Y KYL V + P +F +
Sbjct: 233 NGV-LQCSELVF------VKHSGS-------KFYDYSAKYL--NPVEFVIPAQFDNT--D 274
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
E AS +F LG +ARID + TE G +L +IN G+
Sbjct: 275 GYAEIASKVFFELGCRHYARID-----------------FFVTESGLVL-NEINTSPGLT 316
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHA 455
Q S +F + K +S ++ TI+ A
Sbjct: 317 QKS-IFPSSFK-SMQYSQVIETILASA 341
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 78/296 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTI-- 695
VF +HG GEDGT+Q +L+ +PY G GV AS MDK T + +H A + VL
Sbjct: 95 VFPLLHGVFGEDGTIQGMLDLLDIPYVGSGVFASAAAMDKHYTKILCSH-AGIPVLPWYL 153
Query: 696 ---NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + ++ LK +++ + L VKP G S G + E L V
Sbjct: 154 IKGHAWHKNRDSFLK--------QISDRFTFP-LFVKPVDAGSSFGCTFVDFFEQLPV-- 202
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A+E L HG + I EP ++ E+ S N
Sbjct: 203 -AIEHAL----------QHG---------KSAIVEPALDAPEVFCSLIENN--------- 233
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP----PASI 868
GV+ +C + V VK SG KF + L P PA
Sbjct: 234 ----------GVL-QCSEL------VFVKHSG------SKFYDYSAKYLNPVEFVIPAQF 270
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+T+ + ++ L ++RID FV ++G VL E+NT PG+T ++
Sbjct: 271 DNTDGYAEIASKVFF---ELGCRHYARIDFFVT-ESGLVL-NEINTSPGLTQKSIF 321
>gi|417769729|ref|ZP_12417644.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Pomona str. Pomona]
gi|418683924|ref|ZP_13245117.1| D-ala D-ala ligase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418711131|ref|ZP_13271897.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|400324302|gb|EJO76598.1| D-ala D-ala ligase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409948434|gb|EKN98423.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Pomona str. Pomona]
gi|410768731|gb|EKR43978.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 351
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 733
DK A+ L + V ++ K +D + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLDSTDAVITKLETLGFPQFLKPVEG 181
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 850
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 154/383 (40%), Gaps = 52/383 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-----LNAYAISSAQVYS 133
++ + GG S E IS+ + + + V+ + ++ + Y +S S
Sbjct: 3 KIAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVS 62
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N+P D E + +G +S + + + DIVF +HG GEDG IQ LE +P+
Sbjct: 63 NSP---DLFQEEFQKRYG-VSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYT 118
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G+G A A DK A+ + G P F + E +S + V KL+
Sbjct: 119 GSGVLASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLDSTDA---VITKLETLGFPQF 175
Query: 254 VKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+KP GSS+ V Y + + LK+ +I E D +V+ + FL G E + VL+
Sbjct: 176 LKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLT-GIEVSCGVLERYR 230
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH--TPPRFPIVVINS 369
+ L TE + F++ KY +Q H TP R +
Sbjct: 231 DGKFKKIALPATE----------IVPGGEFFDFESKY---KQGGSHEITPARISEQEMKR 277
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
++E A + LG ++R D + H+ + N + GM +
Sbjct: 278 VQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL------------------ETNTLPGMTE 319
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
TS + QQA G S + +I
Sbjct: 320 TSLIPQQAKAAGISMEEVFSDLI 342
>gi|365824605|ref|ZP_09366679.1| hypothetical protein HMPREF0045_00315 [Actinomyces graevenitzii
C83]
gi|365259665|gb|EHM89650.1| hypothetical protein HMPREF0045_00315 [Actinomyces graevenitzii
C83]
Length = 374
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 164/399 (41%), Gaps = 48/399 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDRNLNAYAISSA 129
RV ++ GG S E GIS +A VL I + V + ++ N A +
Sbjct: 7 RVAVVFGGRSGEHGISCATAAGVLGAIDRERFDVVPVGITREGKWALVEDNPQALELHDN 66
Query: 130 QVYSNTPADFDFKLESLAQGFGSLSEFAEHLAAN---VDIVFPTIHGRFGEDGGIQEVLE 186
Q T + SL G ++ A+ +++ +D+VFP +HG +GEDG IQ +LE
Sbjct: 67 QEAEITLGGLGVQEVSLEYGGELVARNADGTSSSLGKIDVVFPLLHGPYGEDGTIQGMLE 126
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
NV +VG G A DK+ + ++ G P L+ + N
Sbjct: 127 MLNVRYVGCGVTASAAGMDKHVTKVLLADAGIEVAPYELVTPLRWRHEREQ---LVNACR 183
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTA 304
S + VKP RAGSS+G++ +D + + I +D +V+VE ++ E
Sbjct: 184 QLSLPLFVKPARAGSSLGIS----KVDDFSQLEQAIEAAAKVDPKVLVESGIK-AREVEC 238
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G + P V P EV + QG+ + +++ KYL V P + P
Sbjct: 239 AVL--GGRYGEAPRVAPPGEVVMDANQGAGE------FYDFETKYLAHDAVQMVCPAQIP 290
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ IR A+ F L R+D +FL TE G + ++N
Sbjct: 291 DAARDLIRATAAKAFTALDCEGLTRVD-FFL----------------TEDGRAIVNEVNT 333
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+ G S G +++++ +I A +R N+
Sbjct: 334 MPGFTPFSMYPYMWQVAGVDYTSLVSELIDLALARPLNV 372
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 127/316 (40%), Gaps = 86/316 (27%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q +LE V Y G GV AS MDK T + LAD G+
Sbjct: 106 VVFPLLHGPYGEDGTIQGMLEMLNVRYVGCGVTASAAGMDKHVTKVL---LADAGI---- 158
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKL--QCKTLC----VKPARDGCSTGVARLCCAEDLTV 750
+V E L TP+ W +L C+ L VKPAR G S G++++
Sbjct: 159 -EVAPYE--LVTPLR--WRHEREQLVNACRQLSLPLFVKPARAGSSLGISKV-------- 205
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNP-PPEILIFEPFVETDEILFSSQSTNKNADRL 809
+ FS+ IE P++L+ +S K
Sbjct: 206 --------------DDFSQLEQAIEAAAKVDPKVLV--------------ESGIK----- 232
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTV-----KESGDILSLEEKFQGGTGINLTPP 864
+R VE V + G+ G + P V + +G+ E K+ + + P
Sbjct: 233 -----AREVECAV-LGGRYGEAPRVAPPGEVVMDANQGAGEFYDFETKYLAHDAVQMVCP 286
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ + A D + AL EG +R+D F+ D G ++ EVNT+PG TP +
Sbjct: 287 --AQIPDAARDLIRATAAKAFTALDCEGLTRVDFFLTED-GRAIVNEVNTMPGFTPFS-- 341
Query: 925 IHQALSEQPPMYPHQF 940
MYP+ +
Sbjct: 342 ----------MYPYMW 347
>gi|293191001|ref|ZP_06609045.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309]
gi|292820688|gb|EFF79654.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309]
Length = 342
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 153/373 (41%), Gaps = 92/373 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V +I GG + ER +S+ S R V + + VR +D
Sbjct: 4 KVLIIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVD-------------------- 43
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
SLA S S D+V+P +HG GEDG +Q LE +PFVG+ S
Sbjct: 44 -----ASLADAISSFSP---------DVVWPLVHGSIGEDGSLQSFLESLGIPFVGSSSV 89
Query: 199 ACRQAFDKYDA-----SLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN-SGKV 252
A +K A S ++ G++T+P + + +L V + L+ + S V
Sbjct: 90 QAMLASNKPTAKALLGSAGLATPGWVTLPQAIFR-------QLGASHVLSALEGSVSFPV 142
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID-----DRVVVELFLEGGSEFTAIVL 307
V+KPT GS++G++ A + AK + +D R++VE ++ G + V+
Sbjct: 143 VIKPTDGGSALGISTA-------QDAKALRRAMVDAFAYGQRLMVEQRID-GRDVAVSVV 194
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
D+ G PV L P EV R + ++Y +Y T + Y P R ++
Sbjct: 195 DLWDG----PVALPPVEVSTD-------RGR---YDYDARYT-TDETEYFVPARLSDELL 239
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++ A LGL D +R+D + + GT F D N+ GM
Sbjct: 240 ADLQAAAVEAHTTLGLRDLSRMD-----------------FVVDDEGTCWFIDANVAPGM 282
Query: 428 EQTSFLFQQASKV 440
TS L Q A +
Sbjct: 283 TDTSLLPQAADAL 295
Score = 40.4 bits (93), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
V+ VHG IGEDG+LQS LE+ G+P+ G + + +K L LA G +T+
Sbjct: 58 VWPLVHGSIGEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTL 117
Query: 696 NKDVRRK 702
+ + R+
Sbjct: 118 PQAIFRQ 124
>gi|417915727|ref|ZP_12559333.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
bv. 2 str. SK95]
gi|342833200|gb|EGU67487.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
bv. 2 str. SK95]
Length = 347
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 163/389 (41%), Gaps = 67/389 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ A DK + G VP + + ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDMTAKIAE--VEEKL---TYPVFTKPSN 174
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 175 MGSSVGISKSENQ-EELRQALDLAFQ-YDSRVLVE-----------------QGVNAR-- 213
Query: 319 VLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
E+E+ G+ DV+ KD A ++Y KY+ ++ P R V+ +
Sbjct: 214 -----EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPARISDDVVAVM 267
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 268 RQNAETAFRAIGGLGLSRCDFFY-----------------TDQGEIFLNELNTMPGFTQW 310
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ +++ ++ A F
Sbjct: 311 SMYPLLWDNMGISYPDLIERLVDLAKESF 339
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDMTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+AL+ L F + D + Q N
Sbjct: 192 QALD---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P + +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIP--ARISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDQGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
>gi|84498310|ref|ZP_00997107.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649]
gi|84381810|gb|EAP97693.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649]
Length = 382
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 160/401 (39%), Gaps = 57/401 (14%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R LRV L+ GG S+E +S +A SV+ + + V I ++ S + N
Sbjct: 16 RRLRVALVFGGRSSEHAVSCATAASVMSALDPERYDVIPIGIAKD------GSWVLAPND 69
Query: 136 PADFDFKL----ESLAQGFGSL---SEFAEHLAAN-----------VDIVFPTIHGRFGE 177
P E A G L S A HL + VD+VFP +HG FGE
Sbjct: 70 PEPLRLAPGHIPEVDASGPSVLVPTSATARHLIVHEPGAAPRELNEVDVVFPLLHGPFGE 129
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
DG IQ +L+ +V +VG+G A DK+ + + G P ++ E +
Sbjct: 130 DGTIQGMLDLADVRYVGSGVTASAVMMDKHMMKVVFAAAGLPVGPYTVITDREWLRDPEA 189
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297
L+ V VKP RAGSS+G++ D L+ A E D +V+VE +
Sbjct: 190 ALDAVGALE---FPVFVKPARAGSSMGIS-KVDSPDGLRAAVEAAREH-DPKVIVEQGIV 244
Query: 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357
G E VLD G G D P L G V + A +++ KYL +
Sbjct: 245 -GREIECGVLD-GHGTDA------PRTSPL---GECIVVKGHAFYDFEAKYLADDDIRLE 293
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P + I + A + F G AR D +FL T+ G +L
Sbjct: 294 APADVAPDIAEQIAQMAVIAFTAAGCEGLARCD-FFL----------------TDTGDLL 336
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+IN + G +S + + G ++ ++ +I A R
Sbjct: 337 INEINTMPGFTPSSMYPRMWAAAGLTYPQLIDELIALAMER 377
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 118/293 (40%), Gaps = 67/293 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD----KVATSLALNHLADLGVL 693
VF +HG GEDGT+Q +L+ V Y G GV AS MD KV + A + V+
Sbjct: 119 VFPLLHGPFGEDGTIQGMLDLADVRYVGSGVTASAVMMDKHMMKVVFAAAGLPVGPYTVI 178
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T + +R E L + L+ VKPAR G S G++++ + L V+
Sbjct: 179 TDREWLRDPEAAL---------DAVGALEFPVF-VKPARAGSSMGISKVDSPDGLRAAVE 228
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
A +R H P++++ + V
Sbjct: 229 A-------------AREHD--------PKVIVEQGIVGR--------------------- 246
Query: 814 NSRWVEITVGVIGKCGS---MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870
EI GV+ G+ S + V + E K+ I L P + ++
Sbjct: 247 -----EIECGVLDGHGTDAPRTSPLGECIVVKGHAFYDFEAKYLADDDIRLEAP--ADVA 299
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
+ ++ Q + A EG +R D F+ D G++LI E+NT+PG TPS++
Sbjct: 300 PDIAEQIAQMAVIAFTAAGCEGLARCDFFLT-DTGDLLINEINTMPGFTPSSM 351
>gi|384429914|ref|YP_005639275.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. raphani
756C]
gi|341939018|gb|AEL09157.1| D-alanine--D-alanine ligase A [Xanthomonas campestris pv. raphani
756C]
Length = 368
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 166/407 (40%), Gaps = 52/407 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY--- 132
R +RVGLI GG SAE +SL SAR++L + ID+ + +S+ + +
Sbjct: 2 RRIRVGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQ-GQWHLSAPESFLLD 60
Query: 133 SNTPADFDFKL--ESLAQGFGSLSEF-----AEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
++ P+ + LA G+ S AE A +D+VFP +HG GEDG +Q +L
Sbjct: 61 ADDPSRIALRHSGRGLAVLPGAASAQLCAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLL 120
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
N+PFVG+G A DK + G P ++++ L
Sbjct: 121 RMANLPFVGSGVLGSAVAMDKDMTKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGL 180
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ + A + L D +V+VE + G E
Sbjct: 181 -----PLFVKPANQGSSVGVSQVRSA-EEFSAALELALR-YDHKVLVEAAI-AGREIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL + P + EV + DA ++Y+ KY+ A P
Sbjct: 233 VLG-----NATPQASVCGEVVVH----------DAFYSYQTKYIRDDGAATVIPADIDAH 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ I++ A +Q L AR+D VF ++ G I+ ++N +
Sbjct: 278 TQHRIQQCALQAYQALDCAGMARVD---------VFLCAD--------GRIVINEVNTLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS-YNSVSSH 471
G + S + G + +++ +I A R + ++SV +H
Sbjct: 321 GFTRISMYPKLWEASGLDYRSLVTRLIELALERHADDGRLHSSVVTH 367
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 109/473 (23%), Positives = 167/473 (35%), Gaps = 140/473 (29%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ LQA + P L+ D
Sbjct: 6 VGLIFGGKSAEHEVSLQSARNI---LQALDPQRFEPVLIGI---------------DKQG 47
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ S P S +L +A +P R A R V
Sbjct: 48 QWHLSAPESFLL------------DADDPSRIALRHSGRGLAV----------------- 78
Query: 614 IADELPMRHSINEWIKLAKENQA---TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
LP S A++ A VF VHG +GEDG+LQ LL +P+ G GV+
Sbjct: 79 ----LPGAASAQLCAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLG 134
Query: 671 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC--- 727
S MDK + K V R L P ++ +TL
Sbjct: 135 SAVAMDK----------------DMTKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQF 178
Query: 728 -----VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782
VKPA G S GV+++ AE+ + ALE L
Sbjct: 179 GLPLFVKPANQGSSVGVSQVRSAEEFSA---ALELAL----------------------- 212
Query: 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE 842
+ +++ + EI V+G S+ V V +
Sbjct: 213 ---------------------RYDHKVLVEAAIAGREIECAVLGNATPQASVCGEVVVHD 251
Query: 843 SGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDA 898
+ S + K+ G A+++ + + RI+ A AL G +R+D
Sbjct: 252 A--FYSYQTKYIRDDG------AATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 303
Query: 899 FVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
F+ D G ++I EVNT+PG T + ++ L E + ++++L ER
Sbjct: 304 FLCAD-GRIVINEVNTLPGFT--RISMYPKLWEASGLDYRSLVTRLIELALER 353
>gi|332295511|ref|YP_004437434.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796]
gi|332178614|gb|AEE14303.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796]
Length = 308
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 160/383 (41%), Gaps = 83/383 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++ ++CGG S+E+ +S+ SA +V + + Y + + + +P
Sbjct: 1 MKILILCGGTSSEKEVSIWSAENVYKSLINTE--------------YIVEMVDIATLSPY 46
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ K+ L N D+VFP +HG+ GEDG IQ L+ + ++G+G
Sbjct: 47 ELCQKI----------------LCENFDLVFPVLHGKPGEDGSIQGFLDTLGIKYIGSGV 90
Query: 198 RACRQAFDKYD-----ASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV 252
+C DKY SLE + FI + + +EV E FV K P +
Sbjct: 91 FSCAITMDKYRYKLICKSLEFPQPDFIAIRT--KDSTEVLE------FVRLKGFP----L 138
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
VVKP GSS+GV++ + LK A + + D V+VE F+ G E T V+ +
Sbjct: 139 VVKPNSQGSSVGVSIVNNN-NELKDALELGFK-YDPIVLVEEFIH-GKEITCGVIGNSN- 194
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
V+ LP V++ K F+Y KY P Q P R + + ++E
Sbjct: 195 -----VIALPL---------VEILPKTKFFDYESKYNP-QLCDEIVPARLNDNLKDRLQE 239
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A ++ F R+D + ++ I ++IN I G+ S
Sbjct: 240 LAIKAYKAFDCKCFGRVDMFV-----------------DKYENIYLSEINTIPGLTANSL 282
Query: 433 LFQQASKVGFSHSNILRTIIGHA 455
++ G+S I++ ++ A
Sbjct: 283 FTKEVKAAGYSFQEIVKLLVKLA 305
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 109/305 (35%), Gaps = 73/305 (23%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
K+ EN VF +HG GEDG++Q L+ G+ Y G GV + MDK L L
Sbjct: 51 KILCENFDLVFPVLHGKPGEDGSIQGFLDTLGIKYIGSGVFSCAITMDKYRYKLICKSLE 110
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELT-SKLQCKTLCVKPARDGCSTGVARLCCAED 747
+ D + D L +L+ L VKP G S GV+ +
Sbjct: 111 -----------FPQPDFIAIRTKDSTEVLEFVRLKGFPLVVKPNSQGSSVGVSIV----- 154
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
N+ + +E+ I++ E F+
Sbjct: 155 -----------------NNNNELKDALELGFKYDPIVLVEEFIHGK-------------- 183
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
EIT GVIG + +P V + E K+ + P +
Sbjct: 184 -----------EITCGVIGNSNVIA--LPLVEILPKTKFFDYESKYNPQLCDEIVPARLN 230
Query: 868 IMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
D K R++ +A A + F R+D FV+ + + E+NT+PG+T +++
Sbjct: 231 -------DNLKDRLQELAIKAYKAFDCKCFGRVDMFVD-KYENIYLSEINTIPGLTANSL 282
Query: 924 LIHQA 928
+
Sbjct: 283 FTKEV 287
>gi|326203283|ref|ZP_08193148.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
gi|325986541|gb|EGD47372.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
Length = 376
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 128/317 (40%), Gaps = 61/317 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
VF +HG GEDGT+Q L E G+PY G GV+ + MDK + + L L
Sbjct: 107 VFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLGAAVGMDKAYSKIIFEKEGLPQGDYLVF 166
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
N+ ++ + L+ + + LT C VKPA G S GV + E +L
Sbjct: 167 NR--KQVNNRLEEAVAQVESTLT--YPC---FVKPANAGSSVGVNKASDRE-------SL 212
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
E+ L+ N ++ E F++ EI GN
Sbjct: 213 EKALIIAAKNDRR---------------ILVEEFIDGREI------------ECAVLGND 245
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
V TVG + C + V +S ++ PA +STE ++
Sbjct: 246 EPVASTVGEVVPCNEFYDYEAKYQVGDSSKVVI----------------PAENLSTETVE 289
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 935
K ++ L G SR+D FV+ D G + I E+NT+PG T ++ ++ L +
Sbjct: 290 KIREYAVRAFKCLDCAGLSRVDFFVHKDTGAIYINEINTLPGFT--SISMYPKLWAASGI 347
Query: 936 YPHQFFRKVLDLGSERF 952
Q K+++L ERF
Sbjct: 348 PYSQLIDKLIELALERF 364
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 167/405 (41%), Gaps = 65/405 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLV-------RCYYIDRNLNAYAISSAQ- 130
RV +I GG S+E +S SA+SV+++I + V + ++ N I S +
Sbjct: 5 RVAIIFGGQSSEHEVSRVSAQSVIENIDKEKYEVEIIGITKKGQWLKYNGPVEKIGSGEW 64
Query: 131 --VYSNTPADFDFKLESLAQGFGSLSEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEV 184
V N + A +++ + +A N +D+VFP +HG GEDG IQ +
Sbjct: 65 EAVAHNKLLEGKSSENETASEITNVNSARQVIAGNTKKPIDVVFPVLHGCNGEDGTIQGL 124
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
E +P+VG G DK + + K+G + +VN N+
Sbjct: 125 FELAGIPYVGCGVLGAAVGMDKAYSKIIFEKEGLPQGDYLVFNRKQVN----------NR 174
Query: 245 LDPNSGKV--------VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL 296
L+ +V VKP AGSS+GV A +SL+KA II D R++VE F+
Sbjct: 175 LEEAVAQVESTLTYPCFVKPANAGSSVGVNKASDR-ESLEKAL-IIAAKNDRRILVEEFI 232
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
+ G E VL G D PV EV + D K + + + +P + ++
Sbjct: 233 D-GREIECAVL----GND-EPVASTVGEV-VPCNEFYDYEAKYQVGDSSKVVIPAENLST 285
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
T + IRE A F+ L +R+D +F+ T G I
Sbjct: 286 ET--------VEKIREYAVRAFKCLDCAGLSRVD-FFVHKDT---------------GAI 321
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
+IN + G S + + G +S ++ +I A RF +
Sbjct: 322 YINEINTLPGFTSISMYPKLWAASGIPYSQLIDKLIELALERFED 366
>gi|70732508|ref|YP_262271.1| D-alanyl-alanine synthetase A [Pseudomonas protegens Pf-5]
gi|68346807|gb|AAY94413.1| D-alanine--D-alanine ligase [Pseudomonas protegens Pf-5]
Length = 364
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 164/393 (41%), Gaps = 55/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
LRVG+I GG SAE +SL SAR+++D + ID+ + + ++ N
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKQGHWHLNDTSNFLINQEN 63
Query: 136 PADFDFKLES--LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA + LA G S+ ++ L +VD++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNQSNRELAVVPGKASQQLVETSSQELLGHVDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK D S + + + V F+ + + + +
Sbjct: 124 DLPFVGSDVLGSAVC---MDK-DISKRLLRDAGLAVTPFI----TLTRATRARYGFARAR 175
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ + VKP GSS+GV+ ++ +A + G D +V+VE + G E
Sbjct: 176 ETLGLPLFVKPANQGSSVGVSKVDN--EAEYEAAVELALGFDHKVLVESAVR-GREIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL G D P+ G ++ + ++Y KY+ + P I
Sbjct: 233 VL----GND-QPIA----------SGCGEIVVSNGFYSYDSKYIDGEAAQVLVPADISIE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
IR A FQ LG AR+D + T+ G +L +IN +
Sbjct: 278 HSERIRALAVEAFQVLGCSGLARVDVFL-----------------TDEGEVLINEINSLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G S+S ++ +I A R
Sbjct: 321 GFTRISMYPKLWQATGMSYSELVSRLIELALER 353
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 172/471 (36%), Gaps = 136/471 (28%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID N T S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRTRFEPVLIG--IDKQGHWHLNDT---SNF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A+ Q+V + L H D
Sbjct: 58 LINQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQELLGH-----VD 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 725
CMDK I+K + R L TP + + ++
Sbjct: 138 CMDK----------------DISKRLLRDAGLAVTPFITLTRATRARYGFARARETLGLP 181
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
L VKPA G S GV+++ ++ Y A+E L F
Sbjct: 182 LFVKPANQGSSVGVSKV---DNEAEYEAAVELAL------GFDH---------------- 216
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
+++ + R EI V+G + S + V S
Sbjct: 217 ----------------------KVLVESAVRGREIECAVLGNDQPIASGCGEIVV--SNG 252
Query: 846 ILSLEEKFQGGTGIN-LTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFV 900
S + K+ G L P SI +E RI +A L G +R+D F+
Sbjct: 253 FYSYDSKYIDGEAAQVLVPADISIEHSE-------RIRALAVEAFQVLGCSGLARVDVFL 305
Query: 901 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D GEVLI E+N++PG T + ++ L + M + ++++L ER
Sbjct: 306 T-DEGEVLINEINSLPGFT--RISMYPKLWQATGMSYSELVSRLIELALER 353
>gi|410459405|ref|ZP_11313156.1| D-alanine--D-alanine ligase [Bacillus azotoformans LMG 9581]
gi|409930381|gb|EKN67382.1| D-alanine--D-alanine ligase [Bacillus azotoformans LMG 9581]
Length = 304
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 156/382 (40%), Gaps = 90/382 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++V ++ GG S ER +SL+S + ++ NA +V
Sbjct: 1 MKVAVLYGGTSGEREVSLSSGKGII-------------------NALEKKGHEVIG---- 37
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DF + S+ E L +VD+VF +HGRFGEDG IQ +L+ N+P+VG+G
Sbjct: 38 -IDF----------NPSKINELLTLDVDVVFIGLHGRFGEDGRIQGLLDMLNIPYVGSGV 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A +K A M G + + +N S ++D VVVKP
Sbjct: 87 LGSALAMNKVKAKRIMESVGI-----RVAKDQAINAETFSRESFVLEIDY---PVVVKPA 138
Query: 258 RAGSSIGVTVA-------YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
GS+IG+T+A G+ ++ K D+ V++E F+ G E T VL
Sbjct: 139 SEGSTIGITIANNEQELLAGIEEAFKH---------DEDVLIEEFI-AGMEVTVSVLGKK 188
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
PV +++ K+ ++Y KY P + P R + +
Sbjct: 189 GVEQALPV--------------IEIVPKNKFYDYEAKYAPGGS-DHIIPARVSDEITVYL 233
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
++ A L Q L ++R D + +P F S + ++N + GM T
Sbjct: 234 QKNAVLAHQSLNCKTYSRTD-FIVP-----FDGS----------LPVVLEVNTLPGMTPT 277
Query: 431 SFLFQQASKVGFSHSNILRTII 452
S A ++G S+ +++ +I
Sbjct: 278 SLFPDAAKEIGLSYEDMIERLI 299
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 123/306 (40%), Gaps = 75/306 (24%)
Query: 624 INEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA 683
INE + L + VFI +HG GEDG +Q LL+ +PY G GV+ S M+KV A
Sbjct: 45 INELLTL---DVDVVFIGLHGRFGEDGRIQGLLDMLNIPYVGSGVLGSALAMNKVK---A 98
Query: 684 LNHLADLGVLT-----INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 738
+ +G+ IN + +E +++I + + VKPA +G + G
Sbjct: 99 KRIMESVGIRVAKDQAINAETFSRESF----VLEIDY---------PVVVKPASEGSTIG 145
Query: 739 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 798
+ ++L + +EE E ++ E F+
Sbjct: 146 ITIANNEQEL---LAGIEEAFKH-------------------DEDVLIEEFI-------- 175
Query: 799 SQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG 858
+E+TV V+GK G +L P + + E K+ G
Sbjct: 176 -----------------AGMEVTVSVLGKKGVEQAL-PVIEIVPKNKFYDYEAKYAPGGS 217
Query: 859 INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 918
++ P S T L K L +L + +SR D V D +++EVNT+PGM
Sbjct: 218 DHIIPARVSDEITVYLQKNAV---LAHQSLNCKTYSRTDFIVPFDGSLPVVLEVNTLPGM 274
Query: 919 TPSTVL 924
TP+++
Sbjct: 275 TPTSLF 280
>gi|322385093|ref|ZP_08058740.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100]
gi|417921939|ref|ZP_12565429.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
cristatus ATCC 51100]
gi|321270717|gb|EFX53630.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100]
gi|342833824|gb|EGU68104.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
cristatus ATCC 51100]
Length = 348
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 156/386 (40%), Gaps = 61/386 (15%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
LI GG SAER +S+ SA SV+ + D V+ Y+I + A Q ++ PA D
Sbjct: 8 LIYGGRSAEREVSVLSAESVMRAVNYDKFSVKTYFITK---AGDFIKTQEFTEKPAA-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A S + +VFP +HG GEDG IQ LE +P+VG +
Sbjct: 64 KLMTNATVDVSQQVKPSDIYEENAVVFPVLHGPMGEDGSIQGFLEVLRLPYVGCNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS 261
A DK + G VP V E E + + + + KP+ GS
Sbjct: 124 VAMDKITTKRILESAGIPQVPYV-----AVIEGENLEEKIAEIEEKLTYPIFTKPSNMGS 178
Query: 262 SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321
S+G++ + + L+ A + + D RV++E G +
Sbjct: 179 SVGISKSENQ-EELRAALDLAFK-YDSRVLIE-----------------QGVNAR----- 214
Query: 322 PTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
E+E+ G+ DV+ KD A ++Y KY+ ++ P + VI+ +R
Sbjct: 215 --EIEVGLLGNYDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIPVKISDGVISVMRTN 271
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A F+ LG AR D ++ TE G I ++N + G Q S
Sbjct: 272 AETAFRALGGQGLARCDFFY-----------------TEEGDIFLNELNTMPGFTQWSMY 314
Query: 434 FQQASKVGFSHSNILRTIIGHACSRF 459
+G +S+++ ++ A F
Sbjct: 315 PLLWENMGLPYSDLIEKLVNLAEEAF 340
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 605 KHSWFTGFDIADELPMRHS---INEWIKLAK--ENQATVFIAVHGGIGEDGTLQSLLEAE 659
K FT ADE M ++ +++ +K + E A VF +HG +GEDG++Q LE
Sbjct: 51 KTQEFTEKPAADEKLMTNATVDVSQQVKPSDIYEENAVVFPVLHGPMGEDGSIQGFLEVL 110
Query: 660 GVPYTGPGVMASKTCMDKVATSLAL 684
+PY G +++S MDK+ T L
Sbjct: 111 RLPYVGCNILSSSVAMDKITTKRIL 135
>gi|297564289|ref|YP_003683262.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848738|gb|ADH70756.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 350
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 161/391 (41%), Gaps = 59/391 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG + E +S SA SVL H+ D V I R A+ + + ++ PA
Sbjct: 7 RVAVVFGGRNGEYDVSCASAMSVLTHLDRDRYEVVPVRITRA-GAWVVGTD---TDDPAA 62
Query: 139 FDF-KLESLAQGFGSLSE------FAEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEKYN 189
D +L +L G E E + A D+VFP IHG +GEDG IQ +LE
Sbjct: 63 LDAERLTALTPEPGGERERRPGDGLGEAILALGEADVVFPVIHGPYGEDGTIQGMLELLG 122
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG--SEVNESELSNWFVTNKLDP 247
VP+VG G A DK + G +L+G EV+ E + +
Sbjct: 123 VPYVGNGVLASATGMDKATTKTLLRAAGLPVARDVVLRGPDDEVSPQERAELGL------ 176
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
V VKP R+GSS+GVT G L+ A E D +V+VE + G E VL
Sbjct: 177 ---PVFVKPARSGSSLGVT-RVGDWSELEAAVKTARE-FDTKVLVEEAVV-GREVDLAVL 230
Query: 308 DVGSG-FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
++ G P P E+ V + + F+Y KY + P P+ +
Sbjct: 231 ELPDGALKVGP----PLEIR--------VADTERFFDYDTKY--GGDAVFDIPADLPVGI 276
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ + A +F+ +G R+D +FL G TE + ++N + G
Sbjct: 277 QTQLSDLALGVFEAVGCSGLLRVD-FFL-------------RGGTE---PVVNEVNTLPG 319
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
S Q G + +L ++I A +
Sbjct: 320 FTAHSQYPQIWRATGLEYPELLDSLIRTALA 350
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
LA VF +HG GEDGT+Q +LE GVPY G GV+AS T MDK T L
Sbjct: 92 LALGEADVVFPVIHGPYGEDGTIQGMLELLGVPYVGNGVLASATGMDKATTKTLLRAAG- 150
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
L + +DV +L+ P ++ + ++L VKPAR G S GV R+ +L
Sbjct: 151 ---LPVARDV-----VLRGPDDEVSPQERAELGLPVF-VKPARSGSSLGVTRVGDWSELE 201
Query: 750 VYVKALEE 757
VK E
Sbjct: 202 AAVKTARE 209
>gi|306835963|ref|ZP_07468955.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726]
gi|304568129|gb|EFM43702.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726]
Length = 355
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 154/388 (39%), Gaps = 48/388 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR-------NLNAYAISSAQV 131
RV ++ GG S E +S SA +++ H+ + V I R + I V
Sbjct: 6 RVAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFEVVPIGITREGTWTPGDTEGLEIVDG-V 64
Query: 132 YSNTPADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ L + G + ++ L A+VD++FP +HG +GEDG +Q + E +
Sbjct: 65 MPEVKHGTELALSADPTRKGEIRTISDGSLYAHVDVIFPILHGPYGEDGTMQGLFELSGI 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG G A DK +S G P ++QG +EL+ + D
Sbjct: 125 PYVGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQG----RTELT----AEEKDRLGL 176
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP R GSSIGV+ D +A I LE DD+++VE + G +V
Sbjct: 177 PVFAKPARGGSSIGVSKVSDWAD-FPEAVRIALED-DDKILVEPEIVG--------REVE 226
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G +P L V +G D E + + KYL V P FP + +
Sbjct: 227 VGVLQYPDGRLIASVPALLKGIDDSDE--GFYGFETKYL-DNVVTAQIPAPFPEELTAQL 283
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R+ A F+ L +R+D F + E Y ++N + G
Sbjct: 284 RDMAIRAFKALNCTGLSRVD---------FFVTEEGLY---------INEVNTLPGFTPI 325
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S Q + G + +L +I A +R
Sbjct: 326 SMYPQVLAASGVDYPTLLEVLIASAEAR 353
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 121/309 (39%), Gaps = 78/309 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDGT+Q L E G+PY GPGV+AS MDK T L+ L +
Sbjct: 101 IFPILHGPYGEDGTMQGLFELSGIPYVGPGVLASSVGMDKEFTKKILSAAG----LPVAP 156
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVK- 753
+V IV ELT++ + + + KPAR G S GV+++ D V+
Sbjct: 157 EV----------IVQGRTELTAEEKDRLGLPVFAKPARGGSSIGVSKVSDWADFPEAVRI 206
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
ALE + D+IL + +
Sbjct: 207 ALE----------------------------------DDDKILVEPEIVGR--------- 223
Query: 814 NSRWVEITVGVI----GK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
E+ VGV+ G+ S+ +L+ + + G E K+ P P
Sbjct: 224 -----EVEVGVLQYPDGRLIASVPALLKGIDDSDEG-FYGFETKYLDNVVTAQIPAPFPE 277
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
T L R AL G SR+D FV + + I EVNT+PG TP + + Q
Sbjct: 278 ELTAQLRDMAIR---AFKALNCTGLSRVDFFVTEEG--LYINEVNTLPGFTPIS-MYPQV 331
Query: 929 LSEQPPMYP 937
L+ YP
Sbjct: 332 LAASGVDYP 340
>gi|414157185|ref|ZP_11413485.1| D-alanine-D-alanine ligase [Streptococcus sp. F0442]
gi|410868501|gb|EKS16466.1| D-alanine-D-alanine ligase [Streptococcus sp. F0442]
Length = 348
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 160/380 (42%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I V+ Y+I ++ + Q + PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGD---FIQTQAFEEKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VG G A
Sbjct: 64 KLMTNDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G ++ E + + L S V KP+ G
Sbjct: 124 VAMDKITTKRVLESAGIPQVPYVAVVEGDDLEEKIAA---IEATL---SYPVFTKPSNMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + +D+ + LE ++ + VL V G +
Sbjct: 178 SSVGISKS------------------EDQTELRTALELAFKYDSRVL-VEQGVNAR---- 214
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ ++R
Sbjct: 215 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMAIPAQLDPEVVKTMRT 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G AR D ++ T+ G I ++N + G Q S
Sbjct: 271 NAEKAFRAIGGLGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G ++++++ ++
Sbjct: 314 YPLLWDNMGLNYTDLITKLV 333
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 134/347 (38%), Gaps = 78/347 (22%)
Query: 616 DELPMRHSINEWIK------LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
DE M + +W K + KE A VF +HG +GEDG++Q LE +PY G G++
Sbjct: 62 DEKLMTNDTVDWSKKVAPSAIYKEG-AVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGIL 120
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
AS MDK+ T L G+ + + D L+ I I L+ + K
Sbjct: 121 ASSVAMDKITTKRVLES---AGIPQVPYVAVVEGDDLEEKIAAIEATLSYP-----VFTK 172
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
P+ G S G+++ +ED T ALE L F
Sbjct: 173 PSNMGSSVGISK---SEDQTELRTALE---------------------------LAF--- 199
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG----D 845
+ D + Q N EI VG++G + S +P VK+ D
Sbjct: 200 -KYDSRVLVEQGVNAR-------------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYD 244
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
++ K L P M T A E A+ G +R D F D G
Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNA--------EKAFRAIGGLGLARCD-FFYTDKG 295
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
E+ + E+NT+PG T + ++ L + + K+++LG E F
Sbjct: 296 EIFLNELNTMPGFTQWS--MYPLLWDNMGLNYTDLITKLVELGKEVF 340
>gi|418733561|ref|ZP_13290685.1| D-alanine--D-alanine ligase [Leptospira interrogans str. UI 12758]
gi|421118360|ref|ZP_15578700.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|410009993|gb|EKO68144.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|410773170|gb|EKR53201.1| D-alanine--D-alanine ligase [Leptospira interrogans str. UI 12758]
Length = 351
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 733
DK A+ L + V ++ K +D + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLDSTDAVITKLETLGFPQFLKPVEG 181
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 850
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 154/383 (40%), Gaps = 52/383 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-----LNAYAISSAQVYS 133
++ + GG S E IS+ + + + V+ + ++ + Y +S S
Sbjct: 3 KIAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVS 62
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
++P D E + +G +S + + + DIVF +HG GEDG IQ LE +P+
Sbjct: 63 DSP---DLFQEEFQKRYG-VSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYT 118
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G+G A A DK A+ + G P F + E +S + V KL+
Sbjct: 119 GSGVLASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLDSTDA---VITKLETLGFPQF 175
Query: 254 VKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+KP GSS+ V Y + + LK+ +I E D +V+ + FL G E + VL+
Sbjct: 176 LKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLT-GIEVSCGVLERYR 230
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH--TPPRFPIVVINS 369
+ L TE + F++ KY +Q H TP R +
Sbjct: 231 DGKFKKIALPATE----------IVPGGEFFDFESKY---KQGGSHEITPARISEQEMKR 277
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
++E A + LG ++R D + H+ + N + GM +
Sbjct: 278 VQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL------------------ETNTLPGMTE 319
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
TS + QQA G S + +I
Sbjct: 320 TSLIPQQAKAAGISMEEVFSDLI 342
>gi|406939284|gb|EKD72336.1| hypothetical protein ACD_45C00701G0007 [uncultured bacterium]
Length = 384
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 162/398 (40%), Gaps = 51/398 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYA---ISSAQVYSN 134
+RV ++ GG S E +SL SA +V+ ++ V ID+ + + ++
Sbjct: 7 IRVAVLYGGRSGEHEVSLLSATNVIQYLDRSRFEVVPIGIDKEGAWFLGEDVFQKELTEQ 66
Query: 135 TPADFD-------FKLESLAQGFGSL--SEFAEHLAAN---VDIVFPTIHGRFGEDGGIQ 182
TP F + + + + ++ L D+VFP IHG EDG +Q
Sbjct: 67 TPLRLSRDVQRELFNPDLIGKQLADIKPAQLLPQLKNTGRLFDVVFPVIHGVLCEDGTVQ 126
Query: 183 EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITV-PSFLLQGSEVN-ESELSNWF 240
+LE ++P+VG G + +K D S ++K I V P +++G + + + E F
Sbjct: 127 GLLELTDIPYVGCGVLSSAVGMEK-DVSKRLAKAAGINVAPYVVIKGHQWDRQPEQCCSF 185
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
+ KL V VKP GSS+GV I+ L A D +V++E ++
Sbjct: 186 IAEKL---QLPVFVKPVNTGSSVGVE-KVKRIEELPAAINAAFR-YDTKVIIEQGID-AI 239
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL+ + P+V + E +R + ++Y KYL P
Sbjct: 240 ELEVAVLE-AENYGADPIVSVVGE----------IRPRHEFYSYAAKYLDEHGAELLIPA 288
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P+ V RE A +F L AR+D FL T I F +
Sbjct: 289 QVPVDVREHAREVAQTIFNVLECEGMARVD-LFLERHTQ---------------QIYFNE 332
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN I G + S + G S+S +L +I A R
Sbjct: 333 INTIPGFTRISMYPKLMEASGISYSELLTRLIMLAMER 370
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 110/475 (23%), Positives = 187/475 (39%), Gaps = 113/475 (23%)
Query: 485 LNKREGIREVFVIFGGDTSERQVSLMSGTNV--WLNLQAFNDIEVTPCLLASSIDCSSGM 542
+N IR V V++GG + E +VSL+S TNV +L+ F EV P G+
Sbjct: 1 MNHPPKIR-VAVLYGGRSGEHEVSLLSATNVIQYLDRSRF---EVVPI----------GI 46
Query: 543 DANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVN-DLVE 601
D W L + + TE+ P R + ++ ++ N DL+
Sbjct: 47 D---------KEGAWFLGEDVFQKELTEQT---------PLR--LSRDVQRELFNPDLI- 85
Query: 602 GLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGV 661
G +AD P + + +K VF +HG + EDGT+Q LLE +
Sbjct: 86 ---------GKQLADIKPAQ--LLPQLKNTGRLFDVVFPVIHGVLCEDGTVQGLLELTDI 134
Query: 662 PYTGPGVMASKTCMDK-----VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHE 716
PY G GV++S M+K +A + +N +A V+ ++ R+ E
Sbjct: 135 PYVGCGVLSSAVGMEKDVSKRLAKAAGIN-VAPYVVIKGHQWDRQPEQCCSF-------- 185
Query: 717 LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEM 776
+ KLQ VKP G S GV ++ E+L + A ++ + IE+
Sbjct: 186 IAEKLQLPVF-VKPVNTGSSVGVEKVKRIEELPAAINAAFRYDTKV---IIEQGIDAIEL 241
Query: 777 PNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 836
E+ + E + N AD + V V+G+ H
Sbjct: 242 -----EVAVLE-------------AENYGADPI------------VSVVGEIRPRH---- 267
Query: 837 SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRI 896
+ S K+ G L P + + + + ++ + I N L+ EG +R+
Sbjct: 268 --------EFYSYAAKYLDEHGAELLIP--AQVPVDVREHAREVAQTIFNVLECEGMARV 317
Query: 897 DAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D F+ ++ E+NT+PG T + ++ L E + + +++ L ER
Sbjct: 318 DLFLERHTQQIYFNEINTIPGFT--RISMYPKLMEASGISYSELLTRLIMLAMER 370
>gi|365830083|ref|ZP_09371668.1| D-alanine-D-alanine ligase [Coprobacillus sp. 3_3_56FAA]
gi|365263837|gb|EHM93659.1| D-alanine-D-alanine ligase [Coprobacillus sp. 3_3_56FAA]
Length = 349
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 121/291 (41%), Gaps = 49/291 (16%)
Query: 164 VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223
+D V P +HG+ GEDG +Q ++E +P +G G A DKY A + G S
Sbjct: 96 IDAVLPVLHGKNGEDGTVQGLMELAKIPVLGCGLLASALCMDKYRAHQLVKAAGIKVTRS 155
Query: 224 FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283
L+ N F L+ + VKP +AGSS G++ V + L KA
Sbjct: 156 VLVHN--------INDFNVKALN---FPLFVKPLKAGSSYGISKVVKV-EELTKALEYAF 203
Query: 284 EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFN 343
D+ V+VE +EG +VG + + + E++ G F+
Sbjct: 204 -NYDNEVIVEEAVEG--------FEVGCAIIGNDELTVGEVDEIELSG--------GFFD 246
Query: 344 YRRKY-LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFS 402
Y KY L T + H P R V I+E A +++Q L +FAR+D + P++
Sbjct: 247 YDEKYTLKTSTI--HMPARIDEVTARKIQETAKIIYQTLACQNFARVDMFLTPNN----- 299
Query: 403 SSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIG 453
I+F ++N I G S Q VGF S ++ I+
Sbjct: 300 ------------EIVFNEVNTIPGFTDHSRFPQMMKGVGFEFSELIDKIVA 338
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 127/303 (41%), Gaps = 69/303 (22%)
Query: 619 PMRHSINEWI--KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 676
P R ++ E + K+ + V +HG GEDGT+Q L+E +P G G++AS CMD
Sbjct: 78 PERQAVMEIVDNKIIYQQIDAVLPVLHGKNGEDGTVQGLMELAKIPVLGCGLLASALCMD 137
Query: 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 736
K + L + + + V +V ++ K L VKP + G S
Sbjct: 138 KYRA----HQLVKAAGIKVTRSV----------LVHNINDFNVKALNFPLFVKPLKAGSS 183
Query: 737 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 796
G++++ E+LT KALE N E+++ E VE E+
Sbjct: 184 YGISKVVKVEELT---KALEYAF------------------NYDNEVIV-EEAVEGFEV- 220
Query: 797 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 856
GN E+TVG + + ++ SG +EK+
Sbjct: 221 -----------GCAIIGND---ELTVGEVDE------------IELSGGFFDYDEKYTLK 254
Query: 857 TGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 916
T + PA I A K ++ ++I L + F+R+D F+ +N E++ EVNT+P
Sbjct: 255 T--STIHMPARIDEVTA-RKIQETAKIIYQTLACQNFARVDMFLTPNN-EIVFNEVNTIP 310
Query: 917 GMT 919
G T
Sbjct: 311 GFT 313
>gi|288779631|dbj|BAI70383.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp.
lavendulae]
Length = 345
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 166/386 (43%), Gaps = 57/386 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHI--QGDDLLVRCYYIDRNLNAYAISSA------ 129
+R+ ++CGG S ER +SL S SV + +G ++L+ + + A +
Sbjct: 1 MRIVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAEEPVLAGPLRPGDVVDGF 60
Query: 130 QVYSNTPADFDFK--LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+V PA + +A F A L + D+VF +HG +GEDG +QE LE
Sbjct: 61 EVGKEPPAGHERHGLRRRMAAAFDGGPALA--LLRDADVVFTALHGGWGEDGWVQERLEA 118
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGF-ITVPSFLLQGSEVNESELSNWFVTNKLD 246
V F G S AC A+ K A ++ G +T + G++ E+
Sbjct: 119 AGVRFTGADSTACAAAWHKERAQAVLAAAGVPVTERALWPAGTDGVPQEVRRLVA----- 173
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+G VV KP GSS+ V A + + + A + +G + ++VE FL G EFT V
Sbjct: 174 --AGPVVAKPVADGSSVSVHRADSLAELERLAPEMRADGAE--LLVEPFLP-GREFTVGV 228
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
+ G PV+ E+EL +F+Y KY P V+ P P
Sbjct: 229 I----GGQVLPVI----EIEL----------STPLFDYAAKYQPG-AVSEVCPALIPEEF 269
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ +++ A + LG H +S ++ + +T G + ++N + G
Sbjct: 270 ASRLQQLALRAHEALGF-------------GPHTYSRTDFRCDAT--GEPMCLEVNALPG 314
Query: 427 MEQTSFLFQQASKVGFSHSNILRTII 452
+ TS L AS G++++++ I+
Sbjct: 315 LTATSLLPLAASGAGWTYADLAERIV 340
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 124/328 (37%), Gaps = 79/328 (24%)
Query: 611 GFDIADELPM---RHSINEWIKLAKE---------NQATVFIAVHGGIGEDGTLQSLLEA 658
GF++ E P RH + + A + + VF A+HGG GEDG +Q LEA
Sbjct: 59 GFEVGKEPPAGHERHGLRRRMAAAFDGGPALALLRDADVVFTALHGGWGEDGWVQERLEA 118
Query: 659 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 718
GV +TG S C A LA GV + L + E+
Sbjct: 119 AGVRFTG---ADSTACAAAWHKERAQAVLAAAGVPVTER------ALWPAGTDGVPQEVR 169
Query: 719 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPN 778
+ + KP DG S V R +L E L R+ P RA G
Sbjct: 170 RLVAAGPVVAKPVADGSSVSVHR----------ADSLAE-LERLAPE--MRADGA----- 211
Query: 779 PPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 838
E+L+ EPF+ E TVGVIG ++P +
Sbjct: 212 ---ELLV-EPFLPGR-------------------------EFTVGVIGG-----QVLPVI 237
Query: 839 TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL--EGFSRI 896
++ S + K+Q G + P +++ E + +Q AL +SR
Sbjct: 238 EIELSTPLFDYAAKYQPGAVSEVCP---ALIPEEFASRLQQLALRAHEALGFGPHTYSRT 294
Query: 897 DAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
D F GE + +EVN +PG+T +++L
Sbjct: 295 D-FRCDATGEPMCLEVNALPGLTATSLL 321
>gi|317049667|ref|YP_004117315.1| D-alanine--D-alanine ligase [Pantoea sp. At-9b]
gi|316951284|gb|ADU70759.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
Length = 364
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 157/398 (39%), Gaps = 49/398 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVG+I GG SAE +SL SA+++L+ I V ID+ + ++ N
Sbjct: 5 RVGIIFGGKSAEHEVSLQSAKNILEAIDTSKFDVVLLGIDKQGEWHLNDASGFLLNAENP 64
Query: 139 FDFKLE------SLAQGFGS---LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
L +L G S ++ H + VD++FP +HG GEDG +Q +L N
Sbjct: 65 SLIALNRSGENVALVPGQASQQLITRQNAHPLSQVDVIFPIVHGTLGEDGSLQGLLRMAN 124
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
+PFVG+G + DK + G P + ++ + L V +L
Sbjct: 125 LPFVGSGVLGSAVSMDKDFTKRLLRDAGLKVAP--WISVTQAQRARLDAQAVVAQLGL-- 180
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ +KP GSS+GV+ I+ A + D +V++E ++ G E VL
Sbjct: 181 -PLFIKPANQGSSVGVS-KVSCIEEFAAALDLAFT-FDRKVLIEQGIK-GREIECAVL-- 234
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D PV EV + DA ++Y KY+ P +
Sbjct: 235 --GND-EPVASPCGEVVVH----------DAFYSYDTKYINESGAQVVVPAAISTADSEA 281
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
IR A FQ L AR+D + TE G I+ ++N + G
Sbjct: 282 IRAVALQAFQALECSGMARVDVFL-----------------TEDGEIIVNEVNTLPGFTN 324
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
S + G S+S ++ +I A R ++ S
Sbjct: 325 ISMYPKLWQAAGLSYSALITRLIELAQERHQQSSALKS 362
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 132/325 (40%), Gaps = 82/325 (25%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK
Sbjct: 101 VIFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVSMDK----------------DFT 144
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDL 748
K + R L P + + ++L + L +KPA G S GV+++ C E+
Sbjct: 145 KRLLRDAGLKVAPWISVTQAQRARLDAQAVVAQLGLPLFIKPANQGSSVGVSKVSCIEE- 203
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
+ AL+ +F R ++LI +
Sbjct: 204 --FAAALDLAF------TFDR------------KVLIEQGI------------------- 224
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA-S 867
KG EI V+G + S V V ++ S + K+ +G + P A S
Sbjct: 225 ---KGR----EIECAVLGNDEPVASPCGEVVVHDA--FYSYDTKYINESGAQVVVPAAIS 275
Query: 868 IMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926
+EA+ + + L A AL+ G +R+D F+ D GE+++ EVNT+PG T + ++
Sbjct: 276 TADSEAI----RAVALQAFQALECSGMARVDVFLTED-GEIIVNEVNTLPGFT--NISMY 328
Query: 927 QALSEQPPMYPHQFFRKVLDLGSER 951
L + + ++++L ER
Sbjct: 329 PKLWQAAGLSYSALITRLIELAQER 353
>gi|237807008|ref|YP_002891448.1| D-alanyl-alanine synthetase A [Tolumonas auensis DSM 9187]
gi|259645175|sp|C4L8J2.1|DDL_TOLAT RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|237499269|gb|ACQ91862.1| D-alanine/D-alanine ligase [Tolumonas auensis DSM 9187]
Length = 330
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 151/379 (39%), Gaps = 57/379 (15%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ L V L+CGG +E ISL SA + + + L +++ +++ +
Sbjct: 2 KHLHVLLLCGGGGSEHEISLLSANYLESQL-------------KELAEVSVTRVELFPDH 48
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
D + S G FA A VD V P IHG GE G IQ +LE +P++G
Sbjct: 49 WQTNDGR--SCHLGMDRQLHFANE-AKPVDFVVPCIHGFPGETGDIQSMLELIGLPYLGC 105
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
GS + F+K L +S P L S+ NE+ + + N G V VK
Sbjct: 106 GSEGSKLCFNKVSTKLWLSALDIPNTPFLFL--SDNNEAAHAQAHTAFR---NWGAVFVK 160
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
GSS+G Y V D+ K ++ + G D+V+VE + A+ ++
Sbjct: 161 AASQGSSVG---CYKVTDAAKLSEAVNAAFGYSDQVLVEKAVRPRELEVAVYR-----YN 212
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP-TQQVAYHTPPRFPIVVINSIREG 373
V P E+ D+ ++Y KY + Y P I++IRE
Sbjct: 213 DQLVATRPGEI---------ATPSDSFYSYEEKYSSGSNSTTYLEAPGLSDAQISTIREY 263
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A F +LGL D +RID +FL TE IL +IN GM S
Sbjct: 264 ALKAFTQLGLKDLSRID-FFL----------------TEDNEILLNEINTFPGMTPISMF 306
Query: 434 FQQASKVGFSHSNILRTII 452
+ G + L II
Sbjct: 307 PKLLEHHGDNFKQFLEGII 325
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 118/305 (38%), Gaps = 63/305 (20%)
Query: 624 INEWIKLAKENQATVFI--AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 681
++ + A E + F+ +HG GE G +QS+LE G+PY G G SK C +KV+T
Sbjct: 61 MDRQLHFANEAKPVDFVVPCIHGFPGETGDIQSMLELIGLPYLGCGSEGSKLCFNKVSTK 120
Query: 682 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHEL--TSKLQCKTLCVKPARDGCSTGV 739
L L+ L D+ L + + H T+ + VK A G S G
Sbjct: 121 LWLSAL----------DIPNTPFLFLSDNNEAAHAQAHTAFRNWGAVFVKAASQGSSVGC 170
Query: 740 ARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS 799
++ A L+ V A F +D++L
Sbjct: 171 YKVTDAAKLSEAVNA---------------------------------AFGYSDQVLVEK 197
Query: 800 QSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI 859
+ + +++ N + V G I S S EEK+ G+
Sbjct: 198 AVRPRELEVAVYRYNDQLVATRPGEIA--------------TPSDSFYSYEEKYSSGSN- 242
Query: 860 NLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ T A +S + ++ L L+ SRID F+ DN E+L+ E+NT PGMT
Sbjct: 243 STTYLEAPGLSDAQISTIREYALKAFTQLGLKDLSRIDFFLTEDN-EILLNEINTFPGMT 301
Query: 920 PSTVL 924
P ++
Sbjct: 302 PISMF 306
>gi|330470823|ref|YP_004408566.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
gi|328813794|gb|AEB47966.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
Length = 320
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 156/383 (40%), Gaps = 74/383 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L V ++ GG S ER +SL S R VLD + R ++ L
Sbjct: 9 LHVVVLAGGLSYERDVSLRSGRRVLDAL-------RSVGVEAELR--------------- 46
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D L L A A D V +HG GEDG ++ VL+ VP+VG +
Sbjct: 47 DADVAL---------LPALA---ADPPDAVVIALHGATGEDGSLRGVLDLCGVPYVGCDA 94
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
RA R A+DK A + + G T P ++ + SEL V +++ G ++VKP
Sbjct: 95 RASRLAWDKPSAKAVLREAGIAT-PDWVALPHD-RFSELGAVAVLDRIVDRLGLPLMVKP 152
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGII-LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
+ GS +G V V D+ ++ D +VE ++ G + V+D+G G
Sbjct: 153 AQGGSGLGAAV---VRDAAALPAAMVGCFAYDPTALVERYVS-GMDVAVSVIDLGDG--- 205
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P L P E+ ++ +++Y +Y + +HTP R V + E A
Sbjct: 206 -PQALPPVEIV----------PRNGVYDYAARYT-AGRTTWHTPARLEPAVAEKVGEVAL 253
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
LGL D +R+D + S+ + ++N+ GM +TS L
Sbjct: 254 AAHTALGLRDLSRVD--------LIVDSAGLPH---------VLEVNVSPGMTETSLLPL 296
Query: 436 QASKVGFSHSNILRTIIGHACSR 458
G ++ +++ A +R
Sbjct: 297 AVQAAGLDFGRVIGSLVARAVTR 319
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 106/295 (35%), Gaps = 56/295 (18%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
LA + V IA+HG GEDG+L+ +L+ GVPY G AS+ DK + L +
Sbjct: 56 LAADPPDAVVIALHGATGEDGSLRGVLDLCGVPYVGCDARASRLAWDKPSAKAVLR---E 112
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
G+ T + + + V + + +L L VKPA+ G G A D
Sbjct: 113 AGIATPDWVALPHDRFSELGAVAVLDRIVDRLGLP-LMVKPAQGGSGLGAA---VVRDAA 168
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
A+ C P + E +V
Sbjct: 169 ALPAAMVGCFAYDP-------------------TALVERYVSG----------------- 192
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
+++ V VI G +P V + + ++ G TP + +
Sbjct: 193 --------MDVAVSVI-DLGDGPQALPPVEIVPRNGVYDYAARYTAGRTTWHTP---ARL 240
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+K + AL L SR+D V+ G ++EVN PGMT +++L
Sbjct: 241 EPAVAEKVGEVALAAHTALGLRDLSRVDLIVD-SAGLPHVLEVNVSPGMTETSLL 294
>gi|422390302|ref|ZP_16470397.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1]
gi|422459150|ref|ZP_16535798.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
gi|422465256|ref|ZP_16541863.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
gi|422564392|ref|ZP_16640043.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
gi|422575569|ref|ZP_16651107.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
gi|314923643|gb|EFS87474.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
gi|314967081|gb|EFT11180.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
gi|315092714|gb|EFT64690.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
gi|315103813|gb|EFT75789.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
gi|327327215|gb|EGE68991.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1]
Length = 365
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 165/401 (41%), Gaps = 64/401 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ V +I GG S+E IS SA +V+ I + +++ IS ++ A
Sbjct: 4 IHVAVIFGGMSSEHSISCLSAANVVAAIDAERF---------DVSGVGISPQGIWVRYGA 54
Query: 138 DFDFKLESLAQ---------GFGSLSEFAE-----HLAANVD---IVFPTIHGRFGEDGG 180
D L Q S+ + E NVD +VFP +HG FGEDG
Sbjct: 55 DEILALPGTGQLPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGT 114
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE V +VG G A DK+ + +S+ G + P +++ E E +
Sbjct: 115 IQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLK 174
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
++L+ + VKP R GSSIG++ + L+ A + E D +V++E + G
Sbjct: 175 AASRLEY---PLFVKPARGGSSIGISRVTSP-EHLETAIEMAREH-DSKVLIEQGIR-GR 228
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTP 359
E V+D G P +P G + V + D +++ KYL +Q A
Sbjct: 229 EIECSVIDGRHG--AAPRASVP--------GEIVVHDPDGFYDFEAKYLSGEQKASVQAH 278
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
V ++E A FQ LG ARID + P G +
Sbjct: 279 ANLDDVTRRRVQEVAVKAFQVLGCEGLARIDTFVTPD-----------------GAVYVN 321
Query: 420 DINLISGMEQTSF--LFQQASKVGFSHSNILRTIIGHACSR 458
+ N + G ++S L QAS G +++ I+ +I A R
Sbjct: 322 EPNTMPGFTRSSGFPLMWQAS--GMTYAQIVSELIELALER 360
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 137/331 (41%), Gaps = 82/331 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 695
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 696 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+D +ED +LK S+L+ L VKPAR G S G++R+ E L +
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLE-YPLFVKPARGGSSIGISRVTSPEHLETAI 209
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ +R H +++ +
Sbjct: 210 E-------------MAREHD----------------------------------SKVLIE 222
Query: 813 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 870 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 922
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDVTRRRVQEVAVKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 923 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
>gi|15675338|ref|NP_269512.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes SF370]
gi|56807611|ref|ZP_00365514.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
[Streptococcus pyogenes M49 591]
gi|71903814|ref|YP_280617.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS6180]
gi|71910971|ref|YP_282521.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS5005]
gi|94988835|ref|YP_596936.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS9429]
gi|94992726|ref|YP_600825.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS2096]
gi|209559648|ref|YP_002286120.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes NZ131]
gi|383480238|ref|YP_005389132.1| D-alanine--D-alanine ligase protein Ddl [Streptococcus pyogenes
MGAS15252]
gi|383494155|ref|YP_005411831.1| D-alanine--D-alanine ligase protein Ddl [Streptococcus pyogenes
MGAS1882]
gi|410680825|ref|YP_006933227.1| D-alanine--D-alanine ligase [Streptococcus pyogenes A20]
gi|417856603|ref|ZP_12501662.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes HKU
QMH11M0907901]
gi|22095564|sp|Q99Z34.1|DDL_STRP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|123639624|sp|Q48SP8.1|DDL_STRPM RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|166198506|sp|Q1JAX7.1|DDL_STRPB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|166198507|sp|Q1JL27.1|DDL_STRPC RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|226729274|sp|B5XM63.1|DDL_STRPZ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|13622520|gb|AAK34233.1| putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS]
gi|71802909|gb|AAX72262.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS6180]
gi|71853753|gb|AAZ51776.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS5005]
gi|94542343|gb|ABF32392.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS9429]
gi|94546234|gb|ABF36281.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS2096]
gi|209540849|gb|ACI61425.1| D-alanine--D-alanine ligase [Streptococcus pyogenes NZ131]
gi|378928228|gb|AFC66434.1| D-alanine--D-alanine ligase protein Ddl [Streptococcus pyogenes
MGAS15252]
gi|378929882|gb|AFC68299.1| D-alanine--D-alanine ligase protein Ddl [Streptococcus pyogenes
MGAS1882]
gi|387933558|gb|EIK41671.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395454211|dbj|BAM30550.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes M1 476]
gi|409693414|gb|AFV38274.1| D-alanine--D-alanine ligase [Streptococcus pyogenes A20]
Length = 348
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 151/338 (44%), Gaps = 40/338 (11%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + Q +S P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQ---MGQFIKTQQFSEKPSESER 64
Query: 142 KLES----LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ + L Q S+ E A +VFP +HG GEDG IQ LE +P++GT
Sbjct: 65 LMTNETIELTQKIKP-SDIYEEGA----VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNV 119
Query: 198 RACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
+ A DK + G V + + G ++ + L + + VKP
Sbjct: 120 MSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEAC------LVETLARLTFPIFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A ++ L+KA + L D RV++E A ++VG +
Sbjct: 174 ANMGSSVGISKAQTKVE-LRKAIQLALT-YDSRVLIE------QGVVAREIEVGLLGNDK 225
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV +++ D ++Y+ KY+ ++ P ++ +R A +
Sbjct: 226 VKSTLPGEV---------IKDVD-FYDYQAKYVDN-KITMAIPADVDQSIVTEMRSYAEV 274
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
F+ LG C +R D +FL V+ + T G T+W
Sbjct: 275 AFKALGGCGLSRCD-FFLTQDGQVYLNELNTMPGFTQW 311
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 69/307 (22%)
Query: 621 RHSINEWIKLAK--------ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
R NE I+L + E A VF +HG +GEDG++Q LE +PY G VM+S
Sbjct: 64 RLMTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSS 123
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
MDK+ T L +G+ + V L+ +V+ LT + VKPA
Sbjct: 124 IAMDKITTKRVLES---IGIPQVAYTVYIDGQDLEACLVETLARLTFP-----IFVKPAN 175
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S G+ S+A +E+ L ++
Sbjct: 176 MGSSVGI----------------------------SKAQTKVELRKAIQLALTYD----- 202
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
R++ + EI VG++G + S +P +K+ D + K
Sbjct: 203 --------------SRVLIEQGVVAREIEVGLLGN-DKVKSTLPGEVIKDV-DFYDYQAK 246
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
+ I + P + + + + + E+ AL G SR D F+ D G+V + E+
Sbjct: 247 YVDNK-ITMAIP--ADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLTQD-GQVYLNEL 302
Query: 913 NTVPGMT 919
NT+PG T
Sbjct: 303 NTMPGFT 309
>gi|28895692|ref|NP_802042.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes SSI-1]
gi|306827069|ref|ZP_07460367.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782]
gi|341958612|sp|P0DA50.1|DDL_STRP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|341958613|sp|P0DA51.1|DDL_STRPQ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|28810941|dbj|BAC63875.1| putative D-ala,D-ala ligase [Streptococcus pyogenes SSI-1]
gi|304430815|gb|EFM33826.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782]
Length = 348
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 40/338 (11%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + + + Q +S P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQ-MGQFI--KTQQFSEKPSESER 64
Query: 142 KLES----LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ + L Q S+ E A +VFP +HG GEDG IQ LE +P++GT
Sbjct: 65 LMTNETIELTQKIKP-SDIYEEGA----VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNV 119
Query: 198 RACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
+ A DK + G V + + G ++ + L + + VKP
Sbjct: 120 MSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEAC------LVETLARLTFPIFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A ++ L+KA + L D RV++E A ++VG +
Sbjct: 174 ANMGSSVGISKAQTKVE-LRKAIQLALT-YDSRVLIE------QGVVAREIEVGLLGNDK 225
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV +++ D ++Y+ KY+ ++ P ++ +R A +
Sbjct: 226 VKSTLPGEV---------IKDVD-FYDYQAKYVDN-KITMAIPADVDQSIVTEMRSYAEV 274
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
F+ LG C +R D +FL V+ + T G T+W
Sbjct: 275 AFKALGGCGLSRCD-FFLTQDGQVYLNELNTMPGFTQW 311
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 69/307 (22%)
Query: 621 RHSINEWIKLAK--------ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
R NE I+L + E A VF +HG +GEDG++Q LE +PY G VM+S
Sbjct: 64 RLMTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSS 123
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
MDK+ T L +G+ + V L+ +V+ LT + VKPA
Sbjct: 124 IAMDKITTKRVLES---IGIPQVAYTVYIDGQDLEACLVETLARLTFP-----IFVKPAN 175
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S G+ S+A +E+ L ++
Sbjct: 176 MGSSVGI----------------------------SKAQTKVELRKAIQLALTYD----- 202
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
R++ + EI VG++G + S +P +K+ D + K
Sbjct: 203 --------------SRVLIEQGVVAREIEVGLLGN-DKVKSTLPGEVIKDV-DFYDYQAK 246
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
+ I + P + + + + + E+ AL G SR D F+ D G+V + E+
Sbjct: 247 YVDNK-ITMAIP--ADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLTQD-GQVYLNEL 302
Query: 913 NTVPGMT 919
NT+PG T
Sbjct: 303 NTMPGFT 309
>gi|306823715|ref|ZP_07457090.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679]
gi|309803027|ref|ZP_07697128.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
dentium JCVIHMP022]
gi|304553422|gb|EFM41334.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679]
gi|308220494|gb|EFO76805.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
dentium JCVIHMP022]
Length = 378
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 126/300 (42%), Gaps = 38/300 (12%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
+VD V P +HG +GEDG IQ + E NVP+VG G A DK+ + ++ G P
Sbjct: 102 HVDAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAP 161
Query: 223 SFLLQGSEVN---------ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID 273
L + + E+ L+ P + VKP+RAGSS GVT D
Sbjct: 162 GITLDARDYDAACAFAANGETMLAAVQAAGLRYP----LFVKPSRAGSSFGVTKVEREGD 217
Query: 274 SLKKAKGIILEGIDD-RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 332
+ + A + D RV+VE ++ E VL +G + P P E+ L +
Sbjct: 218 AAELAAAVFEASHHDWRVLVEQGID-AREIECAVLCPKAGDE--PRASWPGEIVLDKRAG 274
Query: 333 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 392
D D +++ KY+ + P P + +RE A F+ + +R+D
Sbjct: 275 GD----DQFYDFDSKYMDAEASHVEVPAALPQETLELVRETAKKAFKAVDGTGLSRVD-- 328
Query: 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
F +++ G ++ +IN + G S + G S+++++ T+I
Sbjct: 329 -------TFVTAD--------GKVMVNEINTMPGFTPISMYPKAWDATGVSYTDLISTLI 373
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q L E VPY G GV+AS CMDK T + L I
Sbjct: 106 VLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITL 165
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCK----TLCVKPARDGCSTGVARL 742
D R + + + +Q L VKP+R G S GV ++
Sbjct: 166 DARDYD--AACAFAANGETMLAAVQAAGLRYPLFVKPSRAGSSFGVTKV 212
Score = 40.0 bits (92), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
PA+ + E L+ ++ + A+ G SR+D FV D G+V++ E+NT+PG TP
Sbjct: 297 PAA-LPQETLELVRETAKKAFKAVDGTGLSRVDTFVTAD-GKVMVNEINTMPGFTP 350
>gi|227501785|ref|ZP_03931834.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725]
gi|227077810|gb|EEI15773.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725]
Length = 355
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 154/389 (39%), Gaps = 50/389 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR-------NLNAYAISSAQV 131
RV ++ GG S E +S SA +++ H+ + V I R + I V
Sbjct: 6 RVAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFQVVPIGITREGTWTPGDTEGLEIVDG-V 64
Query: 132 YSNTPADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ L + G + ++ L A VD++FP +HG +GEDG +Q + E +
Sbjct: 65 MPEVKRGTELALSADPTRKGEIRAISDGSLYAQVDVIFPILHGPYGEDGTMQGLFELSGI 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG-SEVNESELSNWFVTNKLDPNS 249
P+VG G A DK +S G P ++QG +E+ E +
Sbjct: 125 PYVGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTVEEKERLGL-------- 176
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V VKP R GSSIGV+ D +A I LE DD+++VE + G +V
Sbjct: 177 -PVFVKPARGGSSIGVSKVSDWAD-FPEAVRIALED-DDKILVEPEIVG--------REV 225
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +P L V +G D E + + KYL V P FP +
Sbjct: 226 EVGVLQYPDGELIASVPALLKGIDDSDE--GFYGFETKYL-DNVVTAQIPAPFPEELTAQ 282
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ L +R+D F + E Y ++N + G
Sbjct: 283 LRDMAIRAFKALNCTGLSRVD---------FFVTEEGLY---------INEVNTLPGFTP 324
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSR 458
S Q + G + ++L +I A +R
Sbjct: 325 ISMYPQVLAASGVDYPSLLEVLIASAEAR 353
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 18/124 (14%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDGT+Q L E G+PY GPGV+AS MDK T L+ L +
Sbjct: 101 IFPILHGPYGEDGTMQGLFELSGIPYVGPGVLASSVGMDKEFTKKILSAAG----LPVAP 156
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVK- 753
+V IV ELT + + + + VKPAR G S GV+++ D V+
Sbjct: 157 EV----------IVQGRTELTVEEKERLGLPVFVKPARGGSSIGVSKVSDWADFPEAVRI 206
Query: 754 ALEE 757
ALE+
Sbjct: 207 ALED 210
>gi|225351209|ref|ZP_03742232.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225158665|gb|EEG71907.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 384
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 128/299 (42%), Gaps = 36/299 (12%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
+VD V P +HG +GEDG IQ + E NVP+VG G A DK+ + ++ G P
Sbjct: 108 HVDAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAP 167
Query: 223 SFLLQGSEVNESELSNWFVTNKLD-----PNSG---KVVVKPTRAGSSIGVTVAYGVIDS 274
L +V + + ++ F + +G + VKP+RAGSS GVT D+
Sbjct: 168 GITL---DVRDYDAASEFAAEADEMLAAVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDA 224
Query: 275 LKKAKGIILEGIDD-RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSV 333
+ A + D RV+VE ++ E VL +G P P E+ L +
Sbjct: 225 AELAAAVFEASHHDWRVLVEQGID-AREIECAVLCPKAGE--APQASWPGEIVLDKRAEG 281
Query: 334 DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 393
D D +++ KY+ + P P +N +RE A F + +R+D
Sbjct: 282 D----DQFYDFDSKYVNSDASHVEVPASLPEETLNRVRETAKKAFIAVDGAGLSRVD--- 334
Query: 394 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
F +++ G ++ +IN + G S + G S+++++ T+I
Sbjct: 335 ------TFVTAD--------GEVMVNEINTMPGFTPISMYPKAWEATGVSYTDLITTLI 379
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
V +HG GEDGT+Q L E VPY G GV+AS CMDK T + L I
Sbjct: 111 AVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGIT 170
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCK----TLCVKPARDGCSTGVARL 742
DVR + + E+ + +Q L VKP+R G S GV ++
Sbjct: 171 LDVRDYD--AASEFAAEADEMLAAVQQAGLQYPLFVKPSRAGSSFGVTKV 218
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
PAS + E L++ ++ + A+ G SR+D FV D GEV++ E+NT+PG TP
Sbjct: 303 PAS-LPEETLNRVRETAKKAFIAVDGAGLSRVDTFVTAD-GEVMVNEINTMPGFTP 356
>gi|168216305|ref|ZP_02641930.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
gi|182381721|gb|EDT79200.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
Length = 302
Score = 85.5 bits (210), Expect = 1e-13, Method: Composition-based stats.
Identities = 89/377 (23%), Positives = 153/377 (40%), Gaps = 86/377 (22%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++VG+I GG S+ER +SL S S+ +HI + Y +S ++ N
Sbjct: 1 MKVGIIMGGISSEREVSLASGESIFNHIDKEK--------------YEVS--KIIINNKR 44
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D K+ L D +HG+FGEDG +Q L+ ++P+ G G+
Sbjct: 45 DILEKVTGL------------------DFALLALHGKFGEDGTVQAFLDIIDIPYSGCGA 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ DK + + + T ++ E + E K++ V VKP
Sbjct: 87 LSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEIDYE--------KIEEIGYPVFVKPN 138
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSS+ Y D K ++EG+ D+ V++E F++ G E T + + G F
Sbjct: 139 NGGSSVATFKVYKKED----IKDAVMEGLKYDEEVIIESFVK-GREITCPIFN-GELF-- 190
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P+ ++++ K ++Y++KY A H P + + + ++E A
Sbjct: 191 -PI--------------LEIKSKADFYDYKQKY--AANGAEHLPVQLEKSLYDEVKEMAL 233
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ L +AR+D +E G ++N + GM TS Q
Sbjct: 234 KTFEVLKCEVYARVDMII-----------------SEEGVPYILEVNTLPGMTATSLFPQ 276
Query: 436 QASKVGFSHSNILRTII 452
A +G S+S + II
Sbjct: 277 SAESIGISYSKFIDLII 293
Score = 58.5 bits (140), Expect = 2e-05, Method: Composition-based stats.
Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 74/295 (25%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+A+HG GEDGT+Q+ L+ +PY+G G ++S CMDK + L ++
Sbjct: 57 LLALHGKFGEDGTVQAFLDIIDIPYSGCGALSSSLCMDKNLSKKVLK----------AEN 106
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
+R + + I +I +E ++ VKP G S ++ ED+ A+ E
Sbjct: 107 IRTAKWITVKSIEEIDYEKIEEIGYPVF-VKPNNGGSSVATFKVYKKEDIK---DAVMEG 162
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI---LFSSQSTNKNADRLMWKGNS 815
L E +I E FV+ EI +F+ +
Sbjct: 163 L-------------------KYDEEVIIESFVKGREITCPIFNGE--------------- 188
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
L P + +K D ++K+ +L P + D
Sbjct: 189 ------------------LFPILEIKSKADFYDYKQKYAANGAEHL---PVQ-LEKSLYD 226
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
+ K+ L+ E ++R+D ++ + G I+EVNT+PGMT +++ A S
Sbjct: 227 EVKEMALKTFEVLKCEVYARVDMIIS-EEGVPYILEVNTLPGMTATSLFPQSAES 280
>gi|161506745|ref|YP_001576695.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus DPC 4571]
gi|260102150|ref|ZP_05752387.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075]
gi|417009454|ref|ZP_11945829.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus MTCC 5463]
gi|190359176|sp|A8YWP6.1|DDL_LACH4 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|160347734|gb|ABX26408.1| D-alanine-D-alanine ligase [Lactobacillus helveticus DPC 4571]
gi|260084040|gb|EEW68160.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075]
gi|328464938|gb|EGF36226.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus MTCC 5463]
Length = 360
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 157/389 (40%), Gaps = 53/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VGLI GG S+E +S+ S R++ I + V +I N +A
Sbjct: 6 QVGLIFGGNSSEYEVSIVSCRNIYKAIDKEKFDVHPIWI-TNEGYFANEEESFKVLEDPS 64
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ K +L E E+L +D+ FP +HG GEDG +Q + N PFVG
Sbjct: 65 YQVKNPHKVHNISNLIEL-ENLP-EIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVL 122
Query: 199 ACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
A DK + + G +IT+ F + + N +L V KL + +
Sbjct: 123 AAAVTMDKEFTKILAQRVGVPVADWITIKRF--EYDDKNNDKLDYEKVAEKLGRD---MF 177
Query: 254 VKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
VKP+ GSS+G VT A +LK+A DD+V+VE + G TA++
Sbjct: 178 VKPSNQGSSVGVSHVTNADEYAAALKEAF-----KYDDKVLVEETVPGTEVETAVL---- 228
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D P+V ++ K + ++Y+ KY P P +I+++
Sbjct: 229 -GND-KPIVAGVGQI---------TNAKGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTV 277
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R A +++ ARID P G ++ T++N + G
Sbjct: 278 RRNARKVYEVTECSGMARIDSMLTPG-----------------GKVVLTEVNALPGFTNI 320
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G ++ ++ +I RF
Sbjct: 321 SMYPKLFEEAGVPYTELITRLIEVGMERF 349
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 138/336 (41%), Gaps = 65/336 (19%)
Query: 622 HSINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
H+I+ I+L + VF VHG +GEDG LQ L P+ G V+A+ MDK T
Sbjct: 74 HNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAVTMDKEFT 133
Query: 681 SLALNH----LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 736
+ +AD +TI R + D +D + ++ KL + + VKP+ G S
Sbjct: 134 KILAQRVGVPVADW--ITIK---RFEYDDKNNDKLD-YEKVAEKL-GRDMFVKPSNQGSS 186
Query: 737 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 796
GV+ + A++ Y AL+E
Sbjct: 187 VGVSHVTNADE---YAAALKEAF------------------------------------- 206
Query: 797 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 856
K D+++ + E+ V+G + + + +T G S + K+
Sbjct: 207 -------KYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQIT-NAKGSFYSYKNKYDDN 258
Query: 857 TGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 916
+ L P + + E +D ++ + + G +RID+ + G+V++ EVN +P
Sbjct: 259 STSKLQIP--ADLPQEIIDTVRRNARKVYEVTECSGMARIDSML-TPGGKVVLTEVNALP 315
Query: 917 GMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
G T + ++ L E+ + + +++++G ERF
Sbjct: 316 GFT--NISMYPKLFEEAGVPYTELITRLIEVGMERF 349
>gi|398882377|ref|ZP_10637345.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM60]
gi|398198919|gb|EJM85869.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM60]
Length = 364
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 165/409 (40%), Gaps = 87/409 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSV---LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN 134
LRVG+I GG SAE +SL SA+++ LD ++ D +L+ ID+ + N
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSAKNIVDALDRLRFDPVLIG---IDKQ--------GHWHLN 52
Query: 135 TPADFDFKLE-----SLAQGFGSLSEF------------AEHLAANVDIVFPTIHGRFGE 177
P++F E +L Q L+ ++ L +VD++FP +HG GE
Sbjct: 53 DPSNFLLNQENPALIALNQSNRELAVVPGKTRQQLVETSSQELLGHVDVIFPIVHGTLGE 112
Query: 178 DGGIQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234
DG +Q +L ++PFVG+ GS C DK + + G P L + +
Sbjct: 113 DGCLQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFVTLTRATAKRT 169
Query: 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVE 293
+ V KL + VKP GSS+GV+ V D + I L G D++V+VE
Sbjct: 170 GFAE--VRGKLGL---PLFVKPANQGSSVGVS---KVNDEAEYTAAIELALGFDEKVLVE 221
Query: 294 LFLEGGSEFTAIVLD----VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL 349
+ G E VL + SG C +V+ + ++Y KY+
Sbjct: 222 SAVS-GREIECAVLGNEDAIASG--CGEIVV-----------------RSGFYSYDSKYI 261
Query: 350 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409
Q P IR A FQ LG AR+D +
Sbjct: 262 DAQAAQVVVPADISTEASERIRALAVEAFQVLGCSGLARVDVFL---------------- 305
Query: 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
T+ +L +IN + G + S + G ++S ++ +I A +
Sbjct: 306 -TDSDEVLINEINSLPGFTRISMYPKLWQATGMTYSELVSRLIELALEK 353
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 180/471 (38%), Gaps = 136/471 (28%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V +IFGG ++E +VSL S N+ + A + + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRLRFDPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P + R Q+V + L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKT------RQQLVETSSQELLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 720
S CMDK I+K + R L TP V + + E+ K
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRATAKRTGFAEVRGK 177
Query: 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
L L VKPA G S GV+++ D Y A+E L G E
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKV---NDEAEYTAAIELAL------------GFDE----- 216
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
++L S + + EI V+G ++ S + V
Sbjct: 217 -------------KVLVESAVSGR--------------EIECAVLGNEDAIASGCGEIVV 249
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 900
+ S + K+ + P + +STEA ++ + L G +R+D F+
Sbjct: 250 RSG--FYSYDSKYIDAQAAQVVVP--ADISTEASERIRALAVEAFQVLGCSGLARVDVFL 305
Query: 901 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D+ EVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 306 T-DSDEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVSRLIELALEK 353
>gi|187930155|ref|YP_001900642.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12J]
gi|229485977|sp|B2UCX5.1|DDL_RALPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|187727045|gb|ACD28210.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12J]
Length = 331
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 154/385 (40%), Gaps = 93/385 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL ++ R ++A+A
Sbjct: 19 KVGVLMGGRSAEREISLMSGNGVLAALRA-----------RGVDAHA------------- 54
Query: 139 FDFKLESLA----QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
FD L+++A QGF D V ++HGRFGEDG IQ +LE++ +P+ G
Sbjct: 55 FDPGLQAVADLAKQGF--------------DRVVISLHGRFGEDGTIQGLLEQFGIPYTG 100
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW-FVTNKLDPNSGKVV 253
+G A A DK + G T P F++ + ++W V ++L ++
Sbjct: 101 SGVLASALAMDKEATKRQWQTHGLPT-PDFVMLHAG------ADWQAVADRL---GLPLI 150
Query: 254 VKPTRAGSSIGVTVAYGVID---SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
VKP R GSSIG+T V + + +KA +D V+ E F+E G E T ++ G
Sbjct: 151 VKPAREGSSIGLTKVTSVAELPAAYEKAA-----RLDRDVMAEQFIE-GDELTCPIIGEG 204
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
P+ + + A ++Y+ KY T Y P P V +
Sbjct: 205 ESATALPL--------------IRIVAPQANYDYQNKYF-TDDTRYECPAPIPADVAARV 249
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+ ++ LG + R D S F ++N GM
Sbjct: 250 QALVVQAYRGLGCRGWGRADIMLRKSDNAPF----------------LLEMNTSPGMTGH 293
Query: 431 SFLFQQASKVGFSHSNILRTIIGHA 455
S + A G S+ + + + A
Sbjct: 294 SLVPMGARAAGISYEDFVLQLAASA 318
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 113/295 (38%), Gaps = 73/295 (24%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--- 686
LAK+ V I++HG GEDGT+Q LLE G+PYTG GV+AS MDK AT
Sbjct: 65 LAKQGFDRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGL 124
Query: 687 -LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745
D +L D + D L P++ VKPAR+G S G+ ++
Sbjct: 125 PTPDFVMLHAGADWQAVADRLGLPLI----------------VKPAREGSSIGLTKVTSV 168
Query: 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
+L P ++ +A + ++ E F+E D
Sbjct: 169 AEL---------------PAAYEKAARL-------DRDVMAEQFIEGD------------ 194
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP- 864
E+T +IG+ S +L V + + F T P
Sbjct: 195 -------------ELTCPIIGEGESATALPLIRIVAPQANYDYQNKYFTDDTRYECPAPI 241
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PA + + + + + L G+ R D + + ++E+NT PGMT
Sbjct: 242 PADVAA-----RVQALVVQAYRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMT 291
>gi|400293218|ref|ZP_10795097.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
naeslundii str. Howell 279]
gi|399901659|gb|EJN84535.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
naeslundii str. Howell 279]
Length = 388
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 158/392 (40%), Gaps = 51/392 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAIS---SAQVYSN 134
+RV ++ GG S E IS +A VL I D V I + +A S+
Sbjct: 19 VRVAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGQWVLVEDDPAALELSD 78
Query: 135 TPADFDFKLESLAQG----------FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEV 184
+ + L QG L + VD+V P +HG +GEDG IQ +
Sbjct: 79 SRPPVTITADGLGQGVLTAPLGGGELTVLGPTGPRVLGQVDVVLPLLHGPYGEDGTIQGM 138
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
LE +VP+VG G A DK + + G T P ++ +
Sbjct: 139 LEMMSVPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILTACQS 198
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
L S + VKP+RAGSS+G++ + D+++ A+ +D +V+VE + G E
Sbjct: 199 L---SYPLFVKPSRAGSSLGISKVERPEDLPDAIEAAR-----AVDPKVLVESGIV-GRE 249
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL G G D P V P E+ + QG+ + +++ KYL VA P
Sbjct: 250 VEVAVLQ-GRGDDA-PRVAEPGEIAMDTSQGAGE------FYDFETKYLAHDAVAMVCPA 301
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R I + A+ F+ +G AR+D +FL TE G + +
Sbjct: 302 RIGPEERALIMDTAARAFEAVGCEGLARVD-FFL----------------TETGEAVVNE 344
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTII 452
IN + G S G +++++ +I
Sbjct: 345 INTMPGFTPFSMYPYMWQVSGLGYTDLVSELI 376
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 125/308 (40%), Gaps = 72/308 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q +LE VPY G GV+AS MDK T + L G+ T
Sbjct: 121 VLPLLHGPYGEDGTIQGMLEMMSVPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 177
Query: 698 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
V + P I+ L+ L VKP+R G S G++++ EDL
Sbjct: 178 VVVGPHAWKRDPEAILTACQSLSYP-----LFVKPSRAGSSLGISKVERPEDL------- 225
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
P++ A + P++L+ V + + Q +A R+ G
Sbjct: 226 --------PDAIEAARAV------DPKVLVESGIVGREVEVAVLQGRGDDAPRVAEPG-- 269
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE--- 872
EI + T + +G+ E K+ + + PA I E
Sbjct: 270 ---EIAMD---------------TSQGAGEFYDFETKYLAHDAVAMV-CPARIGPEERAL 310
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+D + E A+ EG +R+D F+ + GE ++ E+NT+PG TP +
Sbjct: 311 IMDTAARAFE----AVGCEGLARVDFFLT-ETGEAVVNEINTMPGFTPFS---------- 355
Query: 933 PPMYPHQF 940
MYP+ +
Sbjct: 356 --MYPYMW 361
>gi|312867261|ref|ZP_07727471.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
parasanguinis F0405]
gi|311097390|gb|EFQ55624.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
parasanguinis F0405]
Length = 348
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 158/380 (41%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I V+ Y+I ++ + Q + PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGD---FIQTQAFEEKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VG G A
Sbjct: 64 KLMTNDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + VP +++G +V+E + S V KP+ G
Sbjct: 124 VAMDKITTKRVLESAVIPQVPYVAVVEGDDVDEK------IATIEATLSYPVFTKPSNMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A + L+ A + + D RV+VE G +
Sbjct: 178 SSVGISKAENQTE-LRTALELAFK-YDSRVLVE-----------------QGVNAR---- 214
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ ++R
Sbjct: 215 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMAIPAQLDPEVVKTMRT 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G AR D ++ T+ G I ++N + G Q S
Sbjct: 271 NAEKAFRAIGGLGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G ++++++ ++
Sbjct: 314 YPLLWDNMGLNYTDLITKLV 333
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 134/355 (37%), Gaps = 94/355 (26%)
Query: 616 DELPMRHSINEWIK------LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
DE M + +W K + KE A VF +HG +GEDG++Q LE +PY G G++
Sbjct: 62 DEKLMTNDTVDWSKKVAPSAIYKEG-AVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGIL 120
Query: 670 ASKTCMDKVATSLALN--------HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKL 721
AS MDK+ T L ++A + +++ + E L P+
Sbjct: 121 ASSVAMDKITTKRVLESAVIPQVPYVAVVEGDDVDEKIATIEATLSYPVF---------- 170
Query: 722 QCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 781
KP+ G S G+++ AE+ T ALE
Sbjct: 171 ------TKPSNMGSSVGISK---AENQTELRTALE------------------------- 196
Query: 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 841
L F + D + Q N EI VG++G + S +P VK
Sbjct: 197 --LAF----KYDSRVLVEQGVNAR-------------EIEVGLLGNY-DVKSTLPGEVVK 236
Query: 842 ESG----DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRID 897
+ D ++ K L P M T A E A+ G +R D
Sbjct: 237 DVAFYDYDAKYIDNKITMAIPAQLDPEVVKTMRTNA--------EKAFRAIGGLGLARCD 288
Query: 898 AFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
F D GE+ + E+NT+PG T + ++ L + + K+++LG E F
Sbjct: 289 -FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDNMGLNYTDLITKLVELGKEVF 340
>gi|422014310|ref|ZP_16360924.1| D-alanine--D-alanine ligase [Providencia burhodogranariea DSM
19968]
gi|414101431|gb|EKT63031.1| D-alanine--D-alanine ligase [Providencia burhodogranariea DSM
19968]
Length = 367
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 170/400 (42%), Gaps = 59/400 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNT 135
LRVG+I GG S E +SL SA+++++ + + V ID+ + + + A V++N
Sbjct: 4 LRVGVIFGGKSTEHEVSLQSAKNIINGLDRNKFDVCLIGIDKEGHWHEYNEADFLVHAND 63
Query: 136 PADFDFKL--ESLA-------QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA S+A Q F SL E A+ L +D++FP +HG GEDG +Q +L
Sbjct: 64 PARIALNTPKRSIAIIPGKTTQQFISL-EDAQPLP-QIDVIFPIVHGNLGEDGSLQGLLR 121
Query: 187 KYNVPFVG---TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
N+PFVG GS AC DK D + + + + + F+ + S ++ V
Sbjct: 122 MANLPFVGPSVLGSSAC---MDK-DVTKRLLRDSGLQIAPFITI-TTTGRSTINYESVVK 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
+L + +KP GSS+G++ + L D +V++E ++ G E
Sbjct: 177 QL---GLPLFIKPANQGSSVGISKVTNQEEFTAALDFAFL--FDVKVLIESTVK-GREIE 230
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D P L E+ L ++ + Y KY+ + P
Sbjct: 231 CAVL----GND-QPQASLCGEIVLH----------NSFYAYHTKYIDENGASVVAPADLS 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + + IRE A ++ L C +R+D + TE I+ +IN
Sbjct: 276 VDISDKIREVALQAYRALNCCGMSRVDVFL-----------------TEDNQIVINEINT 318
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463
+ G S + K G ++ ++ +I ++ A
Sbjct: 319 LPGFTNISMYPKLWQKSGMTYQELITRLIELGIEKYQQTA 358
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 109/461 (23%), Positives = 175/461 (37%), Gaps = 114/461 (24%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V VIFGG ++E +VSL S N+ +N N +V C G+D
Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNI-INGLDRNKFDV----------CLIGID---------K 45
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
W H E + A +P R A + R+ + + G K F +
Sbjct: 46 EGHW---------HEYNEA-DFLVHANDPARIALNTPKRSIAI---IPG-KTTQQFISLE 91
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
A LP +F VHG +GEDG+LQ LL +P+ GP V+ S
Sbjct: 92 DAQPLPQID--------------VIFPIVHGNLGEDGSLQGLLRMANLPFVGPSVLGSSA 137
Query: 674 CMDKVATSLALNH--LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
CMDK T L L +TI R I +E K L +KPA
Sbjct: 138 CMDKDVTKRLLRDSGLQIAPFITITTTGRST----------INYESVVKQLGLPLFIKPA 187
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S G++++ E+ T AL+ L F+
Sbjct: 188 NQGSSVGISKVTNQEEFTA---ALDFAFL-------------------------FDV--- 216
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
+++ + + EI V+G SL + + S +
Sbjct: 217 ----------------KVLIESTVKGREIECAVLGNDQPQASLCGEIVLHNS--FYAYHT 258
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ G ++ P + +S + DK ++ AL G SR+D F+ DN +++I E
Sbjct: 259 KYIDENGASVVAP--ADLSVDISDKIREVALQAYRALNCCGMSRVDVFLTEDN-QIVINE 315
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+NT+PG T + ++ L ++ M + ++++LG E++
Sbjct: 316 INTLPGFT--NISMYPKLWQKSGMTYQELITRLIELGIEKY 354
>gi|387891922|ref|YP_006322219.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens A506]
gi|387161555|gb|AFJ56754.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens A506]
Length = 365
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 165/394 (41%), Gaps = 55/394 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
+RVG+I GG SAE +SL SAR+++D + ID+ + + ++ N
Sbjct: 4 VRVGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPVLIGIDKAGHWHLNDTSNFLLNQEN 63
Query: 136 PADFDFKLES--LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA + LA G S+ + + ++D++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNQSNRELAVVPGKASQQVVETSGQGVLEHIDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK D S + + I V F+ + N + S KL
Sbjct: 124 DLPFVGSDVLGSAVC---MDK-DISKRLLRDAGIAVTPFITL-TRANAARTSFETAAGKL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ G + A + L G D++V+VE ++ G E
Sbjct: 179 GV---PMFVKPANQGSSVGVS-KVGSEAEYRAAVELAL-GFDEKVLVESAVQ-GREIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL G D P+ G ++ ++Y KY+ Q P
Sbjct: 233 VL----GND-QPIA----------SGCGEIVVSSGFYSYDSKYIDGQAAQVVVPAAISHD 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
IR A F+ LG AR+D + T+ G +L +IN +
Sbjct: 278 ASERIRSLAIEAFEVLGCAGLARVDVFL-----------------TQDGEVLINEINSLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G + S + G S+S ++ +I A R+
Sbjct: 321 GFTRISMYPKLWQAAGMSYSELVSRLIELALERY 354
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 107/467 (22%), Positives = 179/467 (38%), Gaps = 126/467 (26%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRSRFEPVLIG--IDKAGHWHLNDT---SNF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A+ QVV +G+ +H D
Sbjct: 58 LLNQENPALIALNQSNREL------AVVPGKAS------QQVVETSGQGVLEH-----ID 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 725
CMDK I+K + R + TP + + ++ +T
Sbjct: 138 CMDK----------------DISKRLLRDAGIAVTPFITLTRANAARTSFETAAGKLGVP 181
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
+ VKPA G S GV+++ S + +E+ E ++
Sbjct: 182 MFVKPANQGSSVGVSKV----------------------GSEAEYRAAVELALGFDEKVL 219
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
E V+ EI + D+ + G CG + V SG
Sbjct: 220 VESAVQGREI----ECAVLGNDQPIASG--------------CGEI--------VVSSG- 252
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
S + K+ G + P A +S +A ++ + L G +R+D F+ D G
Sbjct: 253 FYSYDSKYIDGQAAQVVVPAA--ISHDASERIRSLAIEAFEVLGCAGLARVDVFLTQD-G 309
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
EVLI E+N++PG T + ++ L + M + ++++L ER+
Sbjct: 310 EVLINEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIELALERY 354
>gi|212716767|ref|ZP_03324895.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660471|gb|EEB21046.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 384
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 127/299 (42%), Gaps = 36/299 (12%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
+VD V P +HG +GEDG IQ + E NVP+VG G A DK+ + ++ G P
Sbjct: 108 HVDAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAP 167
Query: 223 SFLLQGSEVNESELSNWFVTNKLDPNSG--------KVVVKPTRAGSSIGVTVAYGVIDS 274
L +V + + ++ F + + + VKP+RAGSS GVT D+
Sbjct: 168 GITL---DVRDYDAASEFAAEADEMLAAVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDA 224
Query: 275 LKKAKGIILEGIDD-RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSV 333
+ A + D RV+VE ++ E VL +G P P E+ L +
Sbjct: 225 AELAAAVFEASHHDWRVLVEQGID-AREIECAVLCPKAGE--APQASWPGEIVLDKRAEG 281
Query: 334 DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 393
D D +++ KY+ + P P +N +RE A F + +R+D
Sbjct: 282 D----DQFYDFDSKYVNSDASHVEVPASLPEETLNRVRETAKKAFIAVDGAGLSRVD--- 334
Query: 394 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
F +++ G ++ +IN + G S + G S+++++ T+I
Sbjct: 335 ------TFVTAD--------GEVMVNEINTMPGFTPISMYPKAWEATGVSYTDLITTLI 379
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
V +HG GEDGT+Q L E VPY G GV+AS CMDK T + L I
Sbjct: 111 AVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGIT 170
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCK----TLCVKPARDGCSTGVARL 742
DVR + + E+ + +Q L VKP+R G S GV ++
Sbjct: 171 LDVRDYD--AASEFAAEADEMLAAVQQAGLQYPLFVKPSRAGSSFGVTKV 218
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
PAS + E L++ ++ + A+ G SR+D FV D GEV++ E+NT+PG TP
Sbjct: 303 PAS-LPEETLNRVRETAKKAFIAVDGAGLSRVDTFVTAD-GEVMVNEINTMPGFTP 356
>gi|335039977|ref|ZP_08533117.1| D-alanine--D-alanine ligase [Caldalkalibacillus thermarum TA2.A1]
gi|334180093|gb|EGL82718.1| D-alanine--D-alanine ligase [Caldalkalibacillus thermarum TA2.A1]
Length = 357
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 159/388 (40%), Gaps = 59/388 (15%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+GLI GG S+E +SL +A S+L I D V YI L+ + + + A
Sbjct: 7 LGLIYGGKSSEHEVSLRTAFSILQAIDYDKWTVIPLYI--QLDGMWVEGSSLQKPPSAVA 64
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ +L + L + E VD+VFP +HG +GEDG +Q +LE +VP+VG+G
Sbjct: 65 ELRLAT--NRHPDLLKLKE----TVDVVFPVVHGPYGEDGTLQGLLEMIDVPYVGSGVLG 118
Query: 200 CRQAFDKYDASLEMSKQGFI--TVP--SFLLQGSEVNESELSNWFVTNKLDPNSG-KVVV 254
DK M K+ F +P +L + + L + + +++ G V V
Sbjct: 119 SSLGMDKV-----MMKRMFALHNLPHGEYLAYTRQEIDKRLES--ICTEIEAQLGYPVFV 171
Query: 255 KPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
KP GSS+G+ A ++ +L +A D +V+VE F+ G L++G
Sbjct: 172 KPANLGSSVGINKAKNEKQLVKALTEAA-----AFDQKVIVEAFINGRE------LEIG- 219
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
VL +LQ ++ ++Y KY P + P V N +
Sbjct: 220 -------VLGNDADKLQTSAVGEIVSAAEFYDYESKY-KEGGAELFIPAKIPERVANEMA 271
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A F L AR+D ++ ++ +IN + G + S
Sbjct: 272 QLAKEAFLALDCAGLARVDFFWDEKEDQLY----------------LNEINTMPGFTEYS 315
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRF 459
K G S+ ++ T+I RF
Sbjct: 316 MYPLLFKKTGVSYQELVETLIQLGLERF 343
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 133/324 (41%), Gaps = 63/324 (19%)
Query: 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLAD 689
KE VF VHG GEDGTLQ LLE VPY G GV+ S MDKV AL++L
Sbjct: 80 KETVDVVFPVVHGPYGEDGTLQGLLEMIDVPYVGSGVLGSSLGMDKVMMKRMFALHNLPH 139
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
L R+E + + I E+ ++L VKPA G S G+ + A++
Sbjct: 140 GEYLAYT----RQE--IDKRLESICTEIEAQLGYPVF-VKPANLGSSVGINK---AKNEK 189
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
VKAL E +F + +I E F+
Sbjct: 190 QLVKALTEA------AAFDQK-------------VIVEAFI------------------- 211
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPASI 868
N R E+ +GV+G + + + E K+ +GG + + PA I
Sbjct: 212 ----NGR--ELEIGVLGNDADKLQTSAVGEIVSAAEFYDYESKYKEGGAELFI---PAKI 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
A + + E AL G +R+D F + ++ + E+NT+PG T + ++
Sbjct: 263 PERVANEMAQLAKEAFL-ALDCAGLARVDFFWDEKEDQLYLNEINTMPGFTEYS--MYPL 319
Query: 929 LSEQPPMYPHQFFRKVLDLGSERF 952
L ++ + + ++ LG ERF
Sbjct: 320 LFKKTGVSYQELVETLIQLGLERF 343
>gi|365828027|ref|ZP_09369859.1| hypothetical protein HMPREF0975_01642 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365264392|gb|EHM94200.1| hypothetical protein HMPREF0975_01642 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 388
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 153/375 (40%), Gaps = 36/375 (9%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV---------RCYYIDRNLNAYAISS 128
+RV ++ GG S E IS +A VL I D V + ++ + A +S
Sbjct: 19 VRVAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGQWVLVEDDPAALELSD 78
Query: 129 AQVYSNTPADFDFKLESLAQGFGS-----LSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
+ AD +L G L VD+V P +HG +GEDG IQ
Sbjct: 79 GRPPVTITADA-LGRGTLTAPLGGGELTVLGPTGPRALGRVDVVLPLLHGPYGEDGTIQG 137
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+LE VP+VG G A DK + + G T P ++ +
Sbjct: 138 MLEMMGVPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACR 197
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII--LEGIDDRVVVELFLEGGSE 301
L + + VKP RAGSS+G++ +D + G I +D +V+VE + G E
Sbjct: 198 SL---TYPLFVKPARAGSSLGIS----KVDRPEDLPGAIEAARAVDPKVLVESGIV-GRE 249
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL G G D P V P E+ + QG+ + +++ KYL VA P
Sbjct: 250 IEVAVLQ-GRGDDA-PRVAEPGEIAMDVTQGAGE------FYDFETKYLAHDAVAMVCPA 301
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R I + A+ F+ +G AR+D + + V + T G T + +F
Sbjct: 302 RIGPKDRALIMDTAARAFEAVGCEGLARVDFFLTDTGEAVVNEINTMPGFTPFS--MFPY 359
Query: 421 INLISGMEQTSFLFQ 435
+ +SG+E T + +
Sbjct: 360 MWQVSGLEYTDLVSE 374
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 118/287 (41%), Gaps = 58/287 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q +LE GVPY G GV+AS MDK T + L G+ T
Sbjct: 121 VLPLLHGPYGEDGTIQGMLEMMGVPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 177
Query: 698 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
V + P I++ LT L VKPAR G S G++++ EDL
Sbjct: 178 VVVGPHAWKRDPEAILEACRSLTYP-----LFVKPARAGSSLGISKVDRPEDL------- 225
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
P + A + P++L+ V + + Q +A R+ G
Sbjct: 226 --------PGAIEAARAV------DPKVLVESGIVGREIEVAVLQGRGDDAPRVAEPG-- 269
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL- 874
EI + V + +G+ E K+ + + P AL
Sbjct: 270 ---EIAMDV---------------TQGAGEFYDFETKYLAHDAVAMVCPARIGPKDRALI 311
Query: 875 -DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
D + E A+ EG +R+D F+ D GE ++ E+NT+PG TP
Sbjct: 312 MDTAARAFE----AVGCEGLARVDFFLT-DTGEAVVNEINTMPGFTP 353
>gi|304385279|ref|ZP_07367624.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284]
gi|304328486|gb|EFL95707.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284]
Length = 368
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 164/393 (41%), Gaps = 68/393 (17%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHI--QGDDLLVRCYYIDRNLN-AYAISSAQVY 132
+ +++ ++ GG S ER +SL+S + D + +G + + ++ +L +
Sbjct: 16 KKMKIAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFET 75
Query: 133 SNTPADFDFKLESLAQGF-------GSLSEFAEH---LAANVDIVFPTIHGRFGEDGGIQ 182
SNT +D++ + + L G++ F ++ + D VF +HG GE+G +Q
Sbjct: 76 SNTDSDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAADFVFLALHGGDGENGKVQ 135
Query: 183 EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
VL+ ++ + G+G+ A A DK + M T +L + +L F
Sbjct: 136 AVLDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGF-- 193
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGG 299
VVVKP GSS+G + + + DSL+ A DD ++VE F+ G
Sbjct: 194 --------PVVVKPNSGGSSVGTMIVHDEEELADSLRDAY-----RFDDEIIVEEFIT-G 239
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
EF+ V V Q ++++ D ++Y K+ + TP
Sbjct: 240 REFSLGV------------------VNEQAMPAIEIVVNDGWYDYEHKFKTGTTTQFITP 281
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
P V + ++ A + LG+ ++ R+D FL + V+
Sbjct: 282 PDIDEEVHDEMKRVAVKTMKVLGMTNYGRVD--FLVNDQGVY----------------VI 323
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
+ N + GM S L Q+A G S+ ++ +II
Sbjct: 324 EANNLPGMTPLSLLPQEAEAAGISYEDLCESII 356
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 77/295 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF+A+HGG GE+G +Q++L+ + YTG G +AS MDK I+K
Sbjct: 120 VFLALHGGDGENGKVQAVLDLNDIKYTGSGTLASGIAMDK----------------AISK 163
Query: 698 DVRRKEDLLKTPIVDIWHE---LTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVK 753
++ D +KT + HE + +L + VKP G S G + E+L
Sbjct: 164 EIMLYND-IKTARFVVLHEEDGIHPQLDFGFPVVVKPNSGGSSVGTMIVHDEEEL----- 217
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
+S A+ DEI+ T +
Sbjct: 218 ----------ADSLRDAYRF------------------DDEIIVEEFITGR--------- 240
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
E ++GV+ + MP++ + + E KF+ GT PP + E
Sbjct: 241 -----EFSLGVVNE-----QAMPAIEIVVNDGWYDYEHKFKTGTTTQFITPPD--IDEEV 288
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
D+ K+ L + + R+D VN D G V +IE N +PGMTP ++L +A
Sbjct: 289 HDEMKRVAVKTMKVLGMTNYGRVDFLVN-DQG-VYVIEANNLPGMTPLSLLPQEA 341
>gi|223937418|ref|ZP_03629323.1| D-alanine/D-alanine ligase [bacterium Ellin514]
gi|223893969|gb|EEF60425.1| D-alanine/D-alanine ligase [bacterium Ellin514]
Length = 304
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 154/383 (40%), Gaps = 86/383 (22%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
++L++ ++ GGPSAER +SL + +V ++ L R +D ++
Sbjct: 8 KILKITVMLGGPSAEREVSLRTGGAVAKALR--SLGHRVDELDPKEKKWS---------- 55
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
L A ++VF +HG +GEDG +Q L+K +P+ G
Sbjct: 56 ------------------------LPAGTEVVFLALHGTYGEDGTVQRELDKLGIPYTGC 91
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
+ A R FDK + + G T F+ + ES + W + + VV+K
Sbjct: 92 DAEASRLGFDKILTKQKCVEAGVPTA-RFM-----IFESRSAVWPMGWQ-----PPVVLK 140
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P R GSS+G+ V D KK + D +V++E + G I+ G
Sbjct: 141 PVRQGSSVGLQFVDRVGDWSKKLAEALR--YDTQVLMEERILGRETTVGIL-----GNRP 193
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P+ V+VR K ++Y+ KY Y P F V I+E A
Sbjct: 194 LPI--------------VEVRPKAGNYDYQNKYT-AGATEYLCPAPFDEAVTARIQEAAL 238
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ +G D++R+D P+ G + ++N + GM +TS L +
Sbjct: 239 GAFKAIGGRDYSRVDVMVRPN-----------------GEPVVLEVNTLPGMTETSLLPK 281
Query: 436 QASKVGFSHSNILRTIIGHACSR 458
A G ++ + + ++ A R
Sbjct: 282 AAMAAGIGYAELCQQMVDLALKR 304
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 117/299 (39%), Gaps = 82/299 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF+A+HG GEDGT+Q L+ G+PYTG AS+ DK+ T + GV T
Sbjct: 63 VFLALHGTYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTK---QKCVEAGVPTARF 119
Query: 698 DVRRKEDLL-----KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + + P+V +KP R G S G L + + +
Sbjct: 120 MIFESRSAVWPMGWQPPVV----------------LKPVRQGSSVG---LQFVDRVGDWS 160
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L E L ++ V +E + ++T
Sbjct: 161 KKLAEALR-------------------------YDTQVLMEERILGRETT---------- 185
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
VG++G + +P V V+ + K+ G L P P E
Sbjct: 186 ---------VGILG-----NRPLPIVEVRPKAGNYDYQNKYTAGATEYLCPAPFD----E 227
Query: 873 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
A+ Q L A A+ +SR+D V NGE +++EVNT+PGMT +++L A++
Sbjct: 228 AVTARIQEAALGAFKAIGGRDYSRVDVMVR-PNGEPVVLEVNTLPGMTETSLLPKAAMA 285
>gi|375290769|ref|YP_005125309.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae 241]
gi|376245602|ref|YP_005135841.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae HC01]
gi|376284635|ref|YP_005157845.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae 31A]
gi|376287638|ref|YP_005160204.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae BH8]
gi|371578150|gb|AEX41818.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae 31A]
gi|371580440|gb|AEX44107.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae 241]
gi|371584972|gb|AEX48637.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae BH8]
gi|372108232|gb|AEX74293.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae HC01]
Length = 365
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 160/406 (39%), Gaps = 81/406 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ-------------------GDDLLVRCYYID 118
++V +I GG S+E +S SA +++ H+ G+ R +D
Sbjct: 16 IKVAIIYGGRSSEHSVSCVSAGAIMAHLDPQRYEVFPVGITHDGVWTVGESDPSRLKTVD 75
Query: 119 RNLNAYAIS---SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRF 175
R + + S V NT + F+ SL A VD+VFP +HGRF
Sbjct: 76 RVMPEVQFTREVSLSVNPNTAGELRFEDGSLY--------------AKVDVVFPVLHGRF 121
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
GEDG IQ + E VP+VGTG + DK M+ +G +L+GSE E
Sbjct: 122 GEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEE 181
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVEL 294
V VKP R GSSIG++ V D S A + D +V+VE
Sbjct: 182 HKRELGV--------PVFVKPARGGSSIGISR---VADWSEWDAALSLAREHDSKVIVE- 229
Query: 295 FLEGGSEFTAIVLDVG--SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
+E + ++ G D V +P +++ +G ++ + + KYL
Sbjct: 230 -----AEIVGVEVECGVLERIDGSLVASVPAQLQDTDEG------EEGFYGFDTKYL-DD 277
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
V H P F I+E + F L AR+D +F+ T+
Sbjct: 278 VVTAHIPAPFDAETTALIQELSLKAFTALSCRGLARVD-FFV----------------TD 320
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G S Q G ++ +L +I A +
Sbjct: 321 HGPVL-NEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQALHK 365
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 124/314 (39%), Gaps = 93/314 (29%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q L E GVPY G GV++S MDK T L L + K
Sbjct: 113 VFPVLHGRFGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFT----KKLMAAEGLPVGK 168
Query: 698 DV--RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+V R E L + E +L VKPAR G S G++R+ D + + AL
Sbjct: 169 EVILRGSETLTE--------EHKRELGVPVF-VKPARGGSSIGISRVA---DWSEWDAAL 216
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
S +R H +++ +
Sbjct: 217 ----------SLAREHD----------------------------------SKVIVEAEI 232
Query: 816 RWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINL-------TPPPAS 867
VE+ GV+ + GS+ + +P+ + D EE F G L P P
Sbjct: 233 VGVEVECGVLERIDGSLVASVPA----QLQDTDEGEEGFYGFDTKYLDDVVTAHIPAPFD 288
Query: 868 IMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926
+T + Q + L A AL G +R+D FV D+G VL E+NT+PG TP +
Sbjct: 289 AETTALI----QELSLKAFTALSCRGLARVDFFVT-DHGPVL-NEINTMPGFTPIS---- 338
Query: 927 QALSEQPPMYPHQF 940
MYP F
Sbjct: 339 --------MYPQVF 344
>gi|386071129|ref|YP_005986025.1| D-alanine--D-alanine ligase [Propionibacterium acnes ATCC 11828]
gi|422465578|ref|ZP_16542171.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
gi|422468037|ref|ZP_16544576.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
gi|314983211|gb|EFT27303.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
gi|315092432|gb|EFT64408.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
gi|353455495|gb|AER06014.1| D-alanine--D-alanine ligase [Propionibacterium acnes ATCC 11828]
Length = 365
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 165/401 (41%), Gaps = 64/401 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ V +I GG S+E IS SA +V+ I + +++ IS ++ A
Sbjct: 4 IHVAVIFGGMSSEHSISCLSAANVVAAIDAERF---------DVSGVGISPQGIWVRYGA 54
Query: 138 DFDFKLESLAQ---------GFGSLSEFAE-----HLAANVD---IVFPTIHGRFGEDGG 180
D L Q S+ + E NVD +VFP +HG FGEDG
Sbjct: 55 DEILALPGTGQLPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGT 114
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE V +VG G A DK+ + +S+ G + P +++ E E +
Sbjct: 115 IQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLK 174
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
++L+ + VKP R GSSIG++ + L+ A + E D +V++E + G
Sbjct: 175 AASRLEY---PLFVKPARGGSSIGISRVTSP-EHLETAIEMAREH-DSKVLIEQGIR-GR 228
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTP 359
E V+D G P +P G + V + D +++ KYL +Q A
Sbjct: 229 EIECSVIDGRHG--AAPRASVP--------GEIVVHDPDGFYDFEAKYLSGEQKASVQAH 278
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
V ++E A FQ LG ARID + P G +
Sbjct: 279 ANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTPD-----------------GAVYVN 321
Query: 420 DINLISGMEQTSF--LFQQASKVGFSHSNILRTIIGHACSR 458
+ N + G ++S L QAS G +++ I+ +I A R
Sbjct: 322 EPNTMPGFTRSSGFPLMWQAS--GMTYAQIVSELIELALER 360
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 137/331 (41%), Gaps = 82/331 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 695
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 696 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+D +ED +LK S+L+ L VKPAR G S G++R+ E L +
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLE-YPLFVKPARGGSSIGISRVTSPEHLETAI 209
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ +R H +++ +
Sbjct: 210 E-------------MAREHD----------------------------------SKVLIE 222
Query: 813 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 870 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 922
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 923 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
>gi|50914531|ref|YP_060503.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10394]
gi|386362976|ref|YP_006072307.1| D-alanine--D-alanine ligase [Streptococcus pyogenes Alab49]
gi|421892938|ref|ZP_16323533.1| D-alanine--D-alanine ligase A [Streptococcus pyogenes NS88.2]
gi|68051961|sp|Q5XB93.1|DDL_STRP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|50903605|gb|AAT87320.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10394]
gi|350277385|gb|AEQ24753.1| D-alanine--D-alanine ligase [Streptococcus pyogenes Alab49]
gi|379981307|emb|CCG27255.1| D-alanine--D-alanine ligase A [Streptococcus pyogenes NS88.2]
Length = 348
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 40/338 (11%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + + + Q +S P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQ-MGQFI--RTQQFSEKPSESER 64
Query: 142 KLES----LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ + L Q S+ E A +VFP +HG GEDG IQ LE +P++GT
Sbjct: 65 LMTNETIELTQKIKP-SDIYEEGA----VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNV 119
Query: 198 RACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
+ A DK + G V + + G ++ + L + + VKP
Sbjct: 120 MSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEAC------LVETLARLTFPIFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A ++ L+KA + L D RV++E A ++VG +
Sbjct: 174 ANMGSSVGISKAQTKVE-LRKAIQLALT-YDSRVLIE------QGVVAREIEVGLLGNDK 225
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV +++ D ++Y+ KY+ ++ P ++ +R A +
Sbjct: 226 VKSTLPGEV---------IKDVD-FYDYQAKYVDN-KITMAIPADVDQSIVTEMRSYAEV 274
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
F+ LG C +R D +FL V+ + T G T+W
Sbjct: 275 AFKALGGCGLSRCD-FFLTQDGQVYLNELNTMPGFTQW 311
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 69/307 (22%)
Query: 621 RHSINEWIKLAK--------ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
R NE I+L + E A VF +HG +GEDG++Q LE +PY G VM+S
Sbjct: 64 RLMTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSS 123
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
MDK+ T L +G+ + V L+ +V+ LT + VKPA
Sbjct: 124 IAMDKITTKRVLES---IGIPQVAYTVYIDGQDLEACLVETLARLTFP-----IFVKPAN 175
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S G+ S+A +E+ L ++
Sbjct: 176 MGSSVGI----------------------------SKAQTKVELRKAIQLALTYD----- 202
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
R++ + EI VG++G + S +P +K+ D + K
Sbjct: 203 --------------SRVLIEQGVVAREIEVGLLGN-DKVKSTLPGEVIKDV-DFYDYQAK 246
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
+ I + P + + + + + E+ AL G SR D F+ D G+V + E+
Sbjct: 247 YVDNK-ITMAIP--ADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLTQD-GQVYLNEL 302
Query: 913 NTVPGMT 919
NT+PG T
Sbjct: 303 NTMPGFT 309
>gi|419781810|ref|ZP_14307624.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK610]
gi|383183868|gb|EIC76400.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK610]
Length = 347
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V ++I ++ + Q +S TPA D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVNTFFISQSGD---FIKTQEFSQTPAQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ +
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-NNKITMDIPAKISDDVVAA 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRRNAETAFRAIGGLGLSRCDFFY-----------------TDRGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIEHLVSLAKQSF 339
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 114/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYINNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ ++ E A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAAMRRNAETAFRAIGGLGLSRCD-FFYTDRGEIFLNELNTMPGFT 308
>gi|309809166|ref|ZP_07703039.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
SPIN 2503V10-D]
gi|308170611|gb|EFO72631.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
SPIN 2503V10-D]
Length = 360
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/400 (22%), Positives = 165/400 (41%), Gaps = 69/400 (17%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ +RVGLI GG S+E +S+ S R++ I + V +I N ++S
Sbjct: 3 KKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWI---TNTGFLASDADSRKV 59
Query: 136 PADFDFKLES--LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
D +++E+ ++ E + +D+ FP +HG GEDG +Q +L + PFV
Sbjct: 60 LEDPTYQIENPHTVTNISNVIELSNR--PEIDVFFPIVHGNLGEDGCLQGLLRILDKPFV 117
Query: 194 GTGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
G A DK + + G +I++ F + ++ +LS +V+ KL +
Sbjct: 118 GDDVLAAAITMDKELNKIMAQRAGVPVADWISIKRF--EYNDAKNEKLSYDYVSQKLGTD 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ VKP+ GSS+G++ D +KA + DD+V+VE ++G
Sbjct: 176 ---LFVKPSNQGSSVGISHVTSAAD-YEKALAEAFK-YDDKVLVEETIKG---------- 220
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVD---------VREKDAIFNYRRKYLPTQQVAYHTP 359
TEVE G+ D + + ++Y KY P
Sbjct: 221 --------------TEVETAVLGNDDAIVSGVGQITNAQGSWYSYENKYNDNSTSKLQIP 266
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
P +I ++R A ++ AR+D SS+ K ++F
Sbjct: 267 AALPSEIIETVRRQALKVYHATECSGLARVDSML---------SSDNK--------VIFN 309
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G S + +VG S++ ++ ++ +A R+
Sbjct: 310 ELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYALDRY 349
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 139/336 (41%), Gaps = 67/336 (19%)
Query: 623 SINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 681
+I+ I+L+ + VF VHG +GEDG LQ LL P+ G V+A+ MDK
Sbjct: 75 NISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAITMDKELNK 134
Query: 682 LALNH----LAD-LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 736
+ +AD + + + + E L ++ S+ L VKP+ G S
Sbjct: 135 IMAQRAGVPVADWISIKRFEYNDAKNEKLS--------YDYVSQKLGTDLFVKPSNQGSS 186
Query: 737 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 796
G++ + A D Y KAL E
Sbjct: 187 VGISHVTSAAD---YEKALAEAF------------------------------------- 206
Query: 797 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 856
K D+++ + + E+ V+G ++ S + +T G S E K+
Sbjct: 207 -------KYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQIT-NAQGSWYSYENKYNDN 258
Query: 857 TGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 916
+ L P A + +E ++ +++ + +A + G +R+D+ ++ DN +V+ E+N++P
Sbjct: 259 STSKLQIPAA--LPSEIIETVRRQALKVYHATECSGLARVDSMLSSDN-KVIFNELNSLP 315
Query: 917 GMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
G T + ++ L EQ + + K+L+ +R+
Sbjct: 316 GFT--NISMYPKLFEQVGISYTELITKLLNYALDRY 349
>gi|388546026|ref|ZP_10149304.1| D-alanyl-alanine synthetase A [Pseudomonas sp. M47T1]
gi|388275846|gb|EIK95430.1| D-alanyl-alanine synthetase A [Pseudomonas sp. M47T1]
Length = 363
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 161/394 (40%), Gaps = 58/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG+I GG SAE +SL SAR++++ + + ID++ + ++ A Y
Sbjct: 4 LRVGVIFGGRSAEHEVSLQSARNIVEALDRERFEPVLIGIDKD-GQWHLNDASNYLLNQE 62
Query: 135 TPADFDFKLE----SLAQGFG--SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA +L G L E A++D++FP +HG GEDG +Q +L
Sbjct: 63 NPALIALNRSNRELALVPGKAERQLVETGASPLAHIDVIFPVVHGTQGEDGCLQGLLRMA 122
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK + + G P L + + + L
Sbjct: 123 DLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAITPFISLNRATARRRDFAQMQAELGL 179
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTA 304
+ VKP GSS+GV+ V D + + + L D++V+VE ++ G E
Sbjct: 180 -----PLFVKPANLGSSVGVS---KVEDEVGYWQAVDLALSYDEKVLVEAAVQ-GREIEC 230
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G D P+ G ++ K ++Y KY+ P P
Sbjct: 231 AVL----GND-QPIA----------SGCGEIVVKGGFYSYDSKYIDGDAAQVLVPADIPE 275
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ +R A FQ LG AR+D + T+ G ++ ++N +
Sbjct: 276 AASDRVRALAVEAFQVLGCSGLARVDVFL-----------------TDSGEVIINELNTL 318
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S Q G +++ ++ +I A R
Sbjct: 319 PGFTRISMYPQLWLAAGMTYTELVSRLIDLALER 352
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 180/461 (39%), Gaps = 117/461 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V VIFGG ++E +VSL S N+ ++A + P L+ D ++ D+S+
Sbjct: 6 VGVIFGGRSAEHEVSLQSARNI---VEALDRERFEPVLIGIDKDGQWHLN------DASN 56
Query: 554 RVV-WSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
++ P + L + E+ A+ P +A LVE TG
Sbjct: 57 YLLNQENPALIALNRSNREL------ALVPGKAE----------RQLVE--------TGA 92
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
P+ H +F VHG GEDG LQ LL +P+ G V+ S
Sbjct: 93 S-----PLAHI------------DVIFPVVHGTQGEDGCLQGLLRMADLPFVGSDVLGSA 135
Query: 673 TCMDKVATSLALNH--LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
CMDK + L LA +++N+ R+ D + ++ ++L L VKP
Sbjct: 136 VCMDKDISKRLLRDAGLAITPFISLNRATARRRD---------FAQMQAELGL-PLFVKP 185
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790
A G S GV+++ ED Y +A++ L
Sbjct: 186 ANLGSSVGVSKV---EDEVGYWQAVDLAL------------------------------- 211
Query: 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 850
DE +++ + + EI V+G + S + VK G S +
Sbjct: 212 SYDE-------------KVLVEAAVQGREIECAVLGNDQPIASGCGEIVVK--GGFYSYD 256
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K+ G + P + + A D+ + L G +R+D F+ D+GEV+I
Sbjct: 257 SKYIDGDAAQVLVP--ADIPEAASDRVRALAVEAFQVLGCSGLARVDVFLT-DSGEVIIN 313
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
E+NT+PG T + ++ L M + +++DL ER
Sbjct: 314 ELNTLPGFT--RISMYPQLWLAAGMTYTELVSRLIDLALER 352
>gi|359791373|ref|ZP_09294233.1| D-alanyl-alanine synthetase A [Mesorhizobium alhagi CCNWXJ12-2]
gi|359252631|gb|EHK55853.1| D-alanyl-alanine synthetase A [Mesorhizobium alhagi CCNWXJ12-2]
Length = 357
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 161/389 (41%), Gaps = 52/389 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+ ++ GG SAE +S+ SA +V+ ++ +I R + +SS + +
Sbjct: 8 LRIAVLFGGRSAEHDVSVLSATNVMHALEPSKYDAVPVFITRE-GRWLLSSFEGGALAKP 66
Query: 138 DFDFKLESLAQGFGSL----SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
++ + G G + ++ A + V+I+FP +HG GEDG +Q + E VP
Sbjct: 67 SSGTEVCLVPGGQGRMMAIPADGAPYELPKVEILFPVLHGLHGEDGAVQGLAEVARVPLA 126
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLL-QGSEVNESELSNWFVTNKLDPNSGKV 252
G G A DK A +++ G + S + QGS +EL +
Sbjct: 127 GCGILGSATALDKDIAKRLLNEAGLPSARSVTIHQGSAPAFAELQGALGL--------PL 178
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVG 310
+KP R GSS+GV+ + + K+ + + EG D +++ E F+ G +++ D
Sbjct: 179 FIKPARQGSSVGVS----KVSAEKEYETALAEGFKHDRKLLAEEFIRGREIECSVLEDTE 234
Query: 311 SG-FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G F P ++P E ++Y KY+ A P P + S
Sbjct: 235 GGLFVSRPGEIVPA-------------ESHGFYSYDAKYIDEHGAALKVPAELPEEIEGS 281
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
IR A+ F+ +G AR+D + P T L ++N I G
Sbjct: 282 IRAMAARAFRAVGCDGMARVDFFVTPDRT------------------LINELNTIPGFTD 323
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G +S I+ ++ H +R
Sbjct: 324 ISMYSKAMAASGVGYSEIIDRLVAHGLAR 352
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
+F +HG GEDG +Q L E VP G G++ S T +DK LN L +TI
Sbjct: 100 LFPVLHGLHGEDGAVQGLAEVARVPLAGCGILGSATALDKDIAKRLLNEAGLPSARSVTI 159
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
++ + EL L L +KPAR G S GV+++ ++ Y AL
Sbjct: 160 HQGS-----------APAFAELQGALGLP-LFIKPARQGSSVGVSKVSAEKE---YETAL 204
Query: 756 EE 757
E
Sbjct: 205 AE 206
>gi|41409117|ref|NP_961953.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|254776254|ref|ZP_05217770.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. avium
ATCC 25291]
gi|417749355|ref|ZP_12397756.1| D-alanine--D-alanine ligase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440778480|ref|ZP_20957238.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp.
paratuberculosis S5]
gi|81413470|sp|Q73VJ4.1|DDL_MYCPA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|41397937|gb|AAS05567.1| DdlA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459123|gb|EGO38071.1| D-alanine--D-alanine ligase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436721130|gb|ELP45303.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 369
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 169/394 (42%), Gaps = 49/394 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DRNLNAYAISS 128
+RV ++ GG S E IS SA S+L ++ V I D + A AIS
Sbjct: 7 VRVAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISD 66
Query: 129 AQ---VYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEV 184
Q V S + + + G SL A + A+VD+VFP +HG +GEDG IQ +
Sbjct: 67 RQLPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGL 126
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
LE VP+VG G A DK + +G +L+ S +S LS
Sbjct: 127 LELAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPS---QSTLS----LQD 179
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+ V VKP R GSSIGV+ D L A + D +V+VE + G E
Sbjct: 180 RERLGLPVFVKPARGGSSIGVS-RVSSWDELDAAVAAARDH-DPKVIVEAAI-AGRELEC 236
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL++ G V T E++ G V RE D+ +++ KYL P +
Sbjct: 237 GVLEMPDG-----TVQASTVGEIRVAG-VRGRE-DSFYDFATKYL-DDTAELDVPAKVDD 288
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ +++RE A F+ + AR+D +FL TE G +L +IN +
Sbjct: 289 EIADAVRELAIRAFKAVDCQGLARVD-FFL----------------TETGPVL-NEINTM 330
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G S + + G + ++L T++ A +R
Sbjct: 331 PGFTTISMYPRMWAASGVDYPSLLATMVETALAR 364
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 57/126 (45%), Gaps = 22/126 (17%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV AS MDK T + D VL
Sbjct: 109 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVL 168
Query: 694 TINKDVRRKED--LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
++ +D L P+ VKPAR G S GV+R+ ++L
Sbjct: 169 RPSQSTLSLQDRERLGLPVF----------------VKPARGGSSIGVSRVSSWDELDAA 212
Query: 752 VKALEE 757
V A +
Sbjct: 213 VAAARD 218
>gi|94994662|ref|YP_602760.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10750]
gi|166198509|sp|Q1J5W7.1|DDL_STRPF RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|94548170|gb|ABF38216.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10750]
Length = 348
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 40/338 (11%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + + + Q +S P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQ-MGQFI--KTQQFSEKPSESER 64
Query: 142 KLES----LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ + L Q S+ E A +VFP +HG GEDG IQ LE +P++GT
Sbjct: 65 LMTNETIELTQKIKP-SDIYEEGA----VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNV 119
Query: 198 RACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
+ A DK + G V + + G ++ + L + + VKP
Sbjct: 120 MSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEAC------LVETLARLTFPIFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A ++ L+KA + L D RV++E A ++VG +
Sbjct: 174 ANMGSSVGISKAQTKVE-LRKAIQLALT-YDSRVLIE------QGVIAREIEVGLLGNDK 225
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV +++ D ++Y+ KY+ ++ P ++ +R A +
Sbjct: 226 VKSTLPGEV---------IKDVD-FYDYQAKYVDN-KITMAIPADVDQSIVTEMRSYAEV 274
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
F+ LG C +R D +FL V+ + T G T+W
Sbjct: 275 AFKALGGCGLSRCD-FFLTQDGQVYLNELNTMPGFTQW 311
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 69/307 (22%)
Query: 621 RHSINEWIKLAK--------ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
R NE I+L + E A VF +HG +GEDG++Q LE +PY G VM+S
Sbjct: 64 RLMTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSS 123
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
MDK+ T L +G+ + V L+ +V+ LT + VKPA
Sbjct: 124 IAMDKITTKRVLES---IGIPQVAYTVYIDGQDLEACLVETLARLTFP-----IFVKPAN 175
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S G+ S+A +E+ L ++
Sbjct: 176 MGSSVGI----------------------------SKAQTKVELRKAIQLALTYD----- 202
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
R++ + EI VG++G + S +P +K+ D + K
Sbjct: 203 --------------SRVLIEQGVIAREIEVGLLGN-DKVKSTLPGEVIKDV-DFYDYQAK 246
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
+ I + P + + + + + E+ AL G SR D F+ D G+V + E+
Sbjct: 247 YVDNK-ITMAIP--ADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLTQD-GQVYLNEL 302
Query: 913 NTVPGMT 919
NT+PG T
Sbjct: 303 NTMPGFT 309
>gi|27381549|ref|NP_773078.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 110]
gi|39931119|sp|Q89GA7.1|DDLA_BRAJA RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthase A
gi|27354717|dbj|BAC51703.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110]
Length = 373
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 154/399 (38%), Gaps = 61/399 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR-------NLNAYAISSAQ 130
+RV ++ GG S E +SL SA SV H+ V ID+ +L + + A
Sbjct: 5 IRVVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAHAA 64
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEKY 188
P + +L G G L + AA +D+VFP IHG EDG +Q +LE
Sbjct: 65 ALPILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLELA 124
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
+V +VG+G A + DK A G P +L + +S+ + ++
Sbjct: 125 DVAYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSS--LAKAVEGL 182
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKA---------KGIILEGIDDRVVVELFLEGG 299
S V VKP GSS+G+ D+L+ A K ++ +GID R + LE
Sbjct: 183 SLPVFVKPCNMGSSVGIH-KVKTQDALEAALDDAFRYDVKVLVQQGIDAREIEVAVLEDE 241
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
+ F ++ ++ + H ++Y KYL P
Sbjct: 242 TLFASLASELNP--NAH----------------------HEFYSYEAKYLDPDGARVDLP 277
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
R + +R A+ +F L FAR+D +FL T G F
Sbjct: 278 ARLDAAQMERVRSLATRVFAALECSGFARVD-FFLDRKT---------------GEFCFN 321
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+IN + G S + G + +L ++ A R
Sbjct: 322 EINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLALDR 360
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 134/321 (41%), Gaps = 68/321 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHLADLGVLTI 695
VF +HG + EDGT+Q LLE V Y G GV+AS MDK VA LA A + V
Sbjct: 102 VVFPVIHGPLCEDGTVQGLLELADVAYVGSGVLASAVSMDKDVAKRLA--EFAGIPVAPY 159
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARDGCSTGVARLCCAEDLTVYVK 753
R K + D L ++ +L VKP G S G+ ++ +
Sbjct: 160 RVLTR------KAFVQDRVSSLAKAVEGLSLPVFVKPCNMGSSVGIHKVKTQD------- 206
Query: 754 ALEECLLRIPPNSFSR-AHGMIEMPNPPPEILIFEPFVETDEILFSSQST--NKNADRLM 810
ALE L ++F +++ EI E V DE LF+S ++ N NA
Sbjct: 207 ALEAAL----DDAFRYDVKVLVQQGIDAREI---EVAVLEDETLFASLASELNPNAHHEF 259
Query: 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870
+ +++++ G ++L PA + +
Sbjct: 260 YSYEAKYLD----------------------------------PDGARVDL---PARLDA 282
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
+ +++ + + AL+ GF+R+D F++ GE E+NT+PG T ++ ++ +
Sbjct: 283 AQ-MERVRSLATRVFAALECSGFARVDFFLDRKTGEFCFNEINTLPGFT--SISMYPKMM 339
Query: 931 EQPPMYPHQFFRKVLDLGSER 951
E + + +++DL +R
Sbjct: 340 EASGVPYGELLSRLVDLALDR 360
>gi|315506958|ref|YP_004085845.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
gi|315413577|gb|ADU11694.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
Length = 331
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 152/382 (39%), Gaps = 72/382 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L V ++ GG S ER +SL S R VLD + R +D L
Sbjct: 19 LHVLVLAGGLSYERDVSLRSGRRVLDAL-------RAVGVDAELR--------------- 56
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D L A D V +HG GEDG ++ VL+ ++VP+VG +
Sbjct: 57 DADVAL------------LPALTADPPDAVVIALHGATGEDGSLRGVLDLWDVPYVGCDA 104
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
R+ R A+DK A + + G T P ++ + SEL V +++ G ++VKP
Sbjct: 105 RSSRLAWDKPSAKAVLREAGIPT-PDWVALPHD-RFSELGAVAVLDRIVDRLGLPLMVKP 162
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GS +G V SL A + D +VE ++ G + VLD+G G
Sbjct: 163 AQGGSGLGAAVVREAA-SLPAAM-VGCFAYDQTALVERYVP-GMDVAVSVLDLGKG---- 215
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
P L P E+ ++ +++Y +Y + +H P R + E A
Sbjct: 216 PQALPPVEIV----------PRNGVYDYAARYT-AGRTTWHAPARLDAATTARVTEVALA 264
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
LGL D +R+D + + + ++N+ GM +TS L
Sbjct: 265 AHTALGLRDVSRVD--------LIVDAGGDPH---------VLEVNVSPGMTETSLLPLA 307
Query: 437 ASKVGFSHSNILRTIIGHACSR 458
G +L T++ A +R
Sbjct: 308 IQAAGLDFGRVLGTLVTRAAAR 329
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L + V IA+HG GEDG+L+ +L+ VPY G +S+ DK + L +
Sbjct: 66 LTADPPDAVVIALHGATGEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLR---E 122
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
G+ T + + + V + + +L L VKPA+ G G A
Sbjct: 123 AGIPTPDWVALPHDRFSELGAVAVLDRIVDRLGLP-LMVKPAQGGSGLGAA 172
>gi|383191618|ref|YP_005201746.1| D-alanine--D-alanine ligase [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371589876|gb|AEX53606.1| D-alanine--D-alanine ligase [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 306
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 136/326 (41%), Gaps = 79/326 (24%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-- 687
L +E + VFIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK T L L
Sbjct: 50 LREEGYSKVFIALHGRGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALGL 109
Query: 688 --ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745
A L ++ + L I ++ + VKP+R+G S G++++
Sbjct: 110 PVAPFVTLHRSQIEEAGQGTLAVKIAEL---------GLPVIVKPSREGSSVGMSKVTTE 160
Query: 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
++L + AL+E F D +L
Sbjct: 161 KEL---LPALQEG------------------------------FRHDDNVLI-------- 179
Query: 806 ADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
+W+ E TV ++G + +MPS+ ++ +G + K+
Sbjct: 180 ---------EKWLSGPEYTVAIVG-----NQVMPSIRIQPAGTFYDYQAKYLSDETQYFC 225
Query: 863 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921
P S EA ++ + L A AL G+ R+D + D G ++EVNT PGMT S
Sbjct: 226 PSGLS----EAQEQQLTALALQAYQALDCSGWGRVDVMQDGD-GNFNLLEVNTSPGMT-S 279
Query: 922 TVLIHQALSEQPPMYPHQFFRKVLDL 947
L+ A +P FR +L+L
Sbjct: 280 HSLVPMAAKHAGLSFPQLVFR-ILEL 304
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 125/314 (39%), Gaps = 62/314 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S +VL ++ V + ID A+ + YS
Sbjct: 4 KVAVLLGGTSAERDVSLQSGAAVLAGLRESG--VDAHGIDTKTFNVALLREEGYSK---- 57
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
VF +HGR GEDG +Q +LE+ +P+ G+G
Sbjct: 58 ----------------------------VFIALHGRGGEDGTLQGLLEQIGLPYTGSGVM 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK+ L G P L S++ E+ V K+ V+VKP+R
Sbjct: 90 ASALTMDKFRTKLVWQALGLPVAPFVTLHRSQIEEAGQGTLAV--KIAELGLPVIVKPSR 147
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ + + K+ + EG DD V++E +L G AIV +
Sbjct: 148 EGSSVGMS----KVTTEKELLPALQEGFRHDDNVLIEKWLSGPEYTVAIVGN-------- 195
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
Q S+ ++ ++Y+ KYL + + Y P + A
Sbjct: 196 -----------QVMPSIRIQPAGTFYDYQAKYL-SDETQYFCPSGLSEAQEQQLTALALQ 243
Query: 377 LFQRLGLCDFARID 390
+Q L + R+D
Sbjct: 244 AYQALDCSGWGRVD 257
>gi|374322161|ref|YP_005075290.1| D-alanine--D-alanine ligase [Paenibacillus terrae HPL-003]
gi|357201170|gb|AET59067.1| D-alanine--D-alanine ligase [Paenibacillus terrae HPL-003]
Length = 362
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 164/392 (41%), Gaps = 56/392 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSA 129
L VGL+ GG S E +SL +A +VL+ + + +YI + L+A S A
Sbjct: 6 LTVGLVYGGKSGEHEVSLQTAYAVLNAFDYEKYEIIPFYITKAGDWRRGSLLDAPLASVA 65
Query: 130 QV-YSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
Q+ + L++L FG L + E +D++FP +HG FGEDG IQ + E
Sbjct: 66 QLKLEHAEGGTKAALDTL---FGKL--YGEQ---TLDVLFPLLHGTFGEDGTIQGLFEMA 117
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
++P+VG G A DK G V ++ ++ + K++
Sbjct: 118 DMPYVGAGVLASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTSHD---LVRKMETE 174
Query: 249 SGK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
G VKP GSS+G++ A + L+KA + L+ D +V+VE +++ E VL
Sbjct: 175 LGYPCFVKPANLGSSVGISKATNR-EELEKAVELALQ-FDLKVIVEEYVD-AREVEVSVL 231
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
G D P+ +P E+ V D ++Y KY Q P V
Sbjct: 232 ----GND-EPIASVPGEI---------VSSSD-YYDYAAKYTDGQSEML-IPAPLDEEVA 275
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ IRE A F+ L C +R D + S H IL ++N + G
Sbjct: 276 DRIREAALQAFRALEGCGISRADFFVRRSDGH----------------ILINEVNTMPGF 319
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + G S+ ++L +I A R+
Sbjct: 320 TPFSMYPLLWRETGVSYQSLLDRMIALALERY 351
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 110/288 (38%), Gaps = 67/288 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
+F +HG GEDGT+Q L E +PY G GV+AS MDK H L +
Sbjct: 96 LFPLLHGTFGEDGTIQGLFEMADMPYVGAGVLASAAGMDKGVMKKLFEHAGLPQVKYCYF 155
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYV 752
N T H+L K++ + VKPA G S G+++ E+L V
Sbjct: 156 N----------STQWAQTSHDLVRKMETELGYPCFVKPANLGSSVGISKATNREELEKAV 205
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ + L++ I E +V+
Sbjct: 206 ELALQFDLKV----------------------IVEEYVDAR------------------- 224
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
E+ V V+G + S+ P V S D K+ G L P P + E
Sbjct: 225 ------EVEVSVLGNDEPIASV-PGEIVS-SSDYYDYAAKYTDGQSEMLIPAP---LDEE 273
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
D+ ++ AL+ G SR D FV +G +LI EVNT+PG TP
Sbjct: 274 VADRIREAALQAFRALEGCGISRADFFVRRSDGHILINEVNTMPGFTP 321
>gi|302870721|ref|YP_003839358.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
gi|302573580|gb|ADL49782.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
Length = 331
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 152/382 (39%), Gaps = 72/382 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L V ++ GG S ER +SL S R VLD + R +D L
Sbjct: 19 LHVLVLAGGLSYERDVSLRSGRRVLDAL-------RAVGVDAELR--------------- 56
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D L A D V +HG GEDG ++ VL+ ++VP+VG +
Sbjct: 57 DADVAL------------LPALTADPPDAVVIALHGATGEDGSLRGVLDLWDVPYVGCDA 104
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
R+ R A+DK A + + G T P ++ + SEL V +++ G ++VKP
Sbjct: 105 RSSRLAWDKPSAKAVLREAGIPT-PDWVALPHD-RFSELGAVAVLDRIVDRLGLPLMVKP 162
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+ GS +G V SL A + D +VE ++ G + VLD+G G
Sbjct: 163 AQGGSGLGAAVVREAA-SLPAAM-VGCFAYDQTALVERYVP-GMDVAVSVLDLGKG---- 215
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
P L P E+ ++ +++Y +Y + +H P R + E A
Sbjct: 216 PQALPPVEIV----------PRNGVYDYAARYT-AGRTTWHAPARLDAATTARVTEVALA 264
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
LGL D +R+D + + + ++N+ GM +TS L
Sbjct: 265 AHTALGLRDVSRVD--------LIVDAGGDPH---------VLEVNVSPGMTETSLLPLA 307
Query: 437 ASKVGFSHSNILRTIIGHACSR 458
G +L T++ A +R
Sbjct: 308 IQAAGLDFGRVLGTLVTRAAAR 329
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L + V IA+HG GEDG+L+ +L+ VPY G +S+ DK + L +
Sbjct: 66 LTADPPDAVVIALHGATGEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLR---E 122
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
G+ T + + + V + + +L L VKPA+ G G A
Sbjct: 123 AGIPTPDWVALPHDRFSELGAVAVLDRIVDRLGLP-LMVKPAQGGSGLGAA 172
>gi|118464178|ref|YP_883000.1| D-alanyl-alanine synthetase A [Mycobacterium avium 104]
gi|189083043|sp|A0QJB2.1|DDL_MYCA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|118165465|gb|ABK66362.1| D-alanine--D-alanine ligase [Mycobacterium avium 104]
Length = 369
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 169/394 (42%), Gaps = 49/394 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DRNLNAYAISS 128
+RV ++ GG S E IS SA S+L ++ V I D + A AIS
Sbjct: 7 VRVAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISD 66
Query: 129 AQ---VYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEV 184
Q V S + + + G SL A + A+VD+VFP +HG +GEDG IQ +
Sbjct: 67 RQLPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGL 126
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
LE VP+VG G A DK + +G +L+ S +S LS
Sbjct: 127 LELAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPS---QSTLS----LQD 179
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+ V VKP R GSSIGV+ D L A + D +V+VE + G E
Sbjct: 180 RERLGLPVFVKPARGGSSIGVS-RVSSWDELDAAVAAARDH-DPKVIVEAAI-AGRELEC 236
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL++ G V T E++ G V RE D+ +++ KYL P +
Sbjct: 237 GVLEMPDG-----TVQASTVGEIRVAG-VRGRE-DSFYDFATKYL-DDTAELDVPAKVDD 288
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ +++RE A F+ + AR+D +FL TE G +L +IN +
Sbjct: 289 EIADAVRELAIRAFKAVDCQGLARVD-FFL----------------TETGPVL-NEINTM 330
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G S + + G + ++L T++ A +R
Sbjct: 331 PGFTTISMYPRMWAASGVDYPSLLATMVETALTR 364
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 57/126 (45%), Gaps = 22/126 (17%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV AS MDK T + D VL
Sbjct: 109 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVL 168
Query: 694 TINKDVRRKED--LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
++ +D L P+ VKPAR G S GV+R+ ++L
Sbjct: 169 RPSQSTLSLQDRERLGLPVF----------------VKPARGGSSIGVSRVSSWDELDAA 212
Query: 752 VKALEE 757
V A +
Sbjct: 213 VAAARD 218
>gi|169342530|ref|ZP_02863584.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
JGS1495]
gi|169299302|gb|EDS81369.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
JGS1495]
Length = 302
Score = 85.1 bits (209), Expect = 2e-13, Method: Composition-based stats.
Identities = 88/377 (23%), Positives = 152/377 (40%), Gaps = 86/377 (22%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++VG+I GG S+ER +SL S S+ +HI + V ++ N
Sbjct: 1 MKVGIIMGGISSEREVSLASGESIFNHIDKEKYEV----------------IKIIINNKR 44
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D K++ L D +HG+FGEDG +Q L+ ++P+ G G+
Sbjct: 45 DILEKVKGL------------------DFALLALHGKFGEDGTVQAFLDIMDIPYSGCGA 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ DK + + + T ++ E + E K++ V VKP
Sbjct: 87 LSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEIDYE--------KIEEIGYPVFVKPN 138
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSS+ Y D K ++EG+ D+ V++E F++ G E T + + G F
Sbjct: 139 NGGSSVATFKVYKKED----IKDAVMEGLKYDEEVIIESFVK-GREITCPIFN-GELF-- 190
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P+ ++++ K ++Y++KY A H P + + + ++E A
Sbjct: 191 -PI--------------LEIKSKADFYDYKQKY--AANGAEHLPVQLEKSLYDEVKEMAL 233
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ L +AR+D +E G ++N + GM TS Q
Sbjct: 234 KTFEVLKCEVYARVDMII-----------------SEEGVPYILEVNTLPGMTATSLFPQ 276
Query: 436 QASKVGFSHSNILRTII 452
A +G S+S + II
Sbjct: 277 SAESIGISYSKFIDLII 293
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 74/295 (25%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+A+HG GEDGT+Q+ L+ +PY+G G ++S CMDK + L ++
Sbjct: 57 LLALHGKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLK----------AEN 106
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
+R + + I +I +E ++ VKP G S ++ ED+ A+ E
Sbjct: 107 IRTAKWITVKSIEEIDYEKIEEIGYPVF-VKPNNGGSSVATFKVYKKEDIK---DAVMEG 162
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI---LFSSQSTNKNADRLMWKGNS 815
L E +I E FV+ EI +F+ +
Sbjct: 163 L-------------------KYDEEVIIESFVKGREITCPIFNGE--------------- 188
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
L P + +K D ++K+ +L P + D
Sbjct: 189 ------------------LFPILEIKSKADFYDYKQKYAANGAEHL---PVQ-LEKSLYD 226
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
+ K+ L+ E ++R+D ++ + G I+EVNT+PGMT +++ A S
Sbjct: 227 EVKEMALKTFEVLKCEVYARVDMIIS-EEGVPYILEVNTLPGMTATSLFPQSAES 280
>gi|19746380|ref|NP_607516.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS8232]
gi|139473555|ref|YP_001128271.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes str.
Manfredo]
gi|25452913|sp|Q8P0C4.1|DDL_STRP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|166198510|sp|A2RDW0.1|DDL_STRPG RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|19748578|gb|AAL98015.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS8232]
gi|134271802|emb|CAM30035.1| D-alanine--D-alanine ligase [Streptococcus pyogenes str. Manfredo]
Length = 348
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 151/338 (44%), Gaps = 40/338 (11%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D LV+ Y+I + Q +S P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQ---MGQFIRTQQFSEKPSESER 64
Query: 142 KLES----LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ + L Q S+ E A +VFP +HG GEDG IQ LE +P++GT
Sbjct: 65 LMTNETIELTQKIKP-SDIYEEGA----VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNV 119
Query: 198 RACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
+ A DK + G V + + G ++ + L + + VKP
Sbjct: 120 MSSSIAMDKITTKRVLESIGIPQVAYTVYIDGQDLEAC------LVETLARLTFPIFVKP 173
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ A ++ L+KA + L D RV++E A ++VG +
Sbjct: 174 ANMGSSVGISKAQTKVE-LRKAIQLALT-YDSRVLIE------QGVVAREIEVGLLGNDK 225
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV +++ D ++Y+ KY+ ++ P ++ +R A +
Sbjct: 226 VKSTLPGEV---------IKDVD-FYDYQAKYVDN-KITMAIPADVDQSIVTEMRSYAEV 274
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVF-SSSETKYGSTEW 413
F+ LG C +R D +FL V+ + T G T+W
Sbjct: 275 AFKALGGCGLSRCD-FFLTQDGQVYLNELNTMPGFTQW 311
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 69/307 (22%)
Query: 621 RHSINEWIKLAK--------ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
R NE I+L + E A VF +HG +GEDG++Q LE +PY G VM+S
Sbjct: 64 RLMTNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSS 123
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
MDK+ T L +G+ + V L+ +V+ LT + VKPA
Sbjct: 124 IAMDKITTKRVLES---IGIPQVAYTVYIDGQDLEACLVETLARLTFP-----IFVKPAN 175
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S G+ S+A +E+ L ++
Sbjct: 176 MGSSVGI----------------------------SKAQTKVELRKAIQLALTYD----- 202
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
R++ + EI VG++G + S +P +K+ D + K
Sbjct: 203 --------------SRVLIEQGVVAREIEVGLLGN-DKVKSTLPGEVIKDV-DFYDYQAK 246
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
+ I + P + + + + + E+ AL G SR D F+ D G+V + E+
Sbjct: 247 YVDNK-ITMAIP--ADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLTQD-GQVYLNEL 302
Query: 913 NTVPGMT 919
NT+PG T
Sbjct: 303 NTMPGFT 309
>gi|330445163|ref|ZP_08308815.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489354|dbj|GAA03312.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 303
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 154/382 (40%), Gaps = 88/382 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ--GDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+RVG++CGG S+ER +SL S ++ ++ G D V
Sbjct: 1 MRVGVLCGGRSSEREVSLKSGAQIVSAVKALGHD---------------------VIQLD 39
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
P D + +L + +D VF +HG GE G IQ +L+ +P+VG+
Sbjct: 40 PCSIDLSMLNLYK---------------LDKVFIALHGGLGESGHIQALLDILQIPYVGS 84
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
G A + +K S G +T P L++ S ++S+ + + VV+K
Sbjct: 85 GVLASAISLNKLKTKEVWSANGLLTAPWVLVRKS-TSQSD-----ILKACGEITFPVVIK 138
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGF 313
P G SIGV A D+ ++ +L DD V+VE F+ G E+T VL+
Sbjct: 139 PLNQGCSIGVAKA----DNEEQLWQALLAAFEYDDEVLVEQFIV-GREYTCAVLN----D 189
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
+ PVV + + D F++ K+ TQ YH P S+++
Sbjct: 190 EALPVVQICS---------------DTFFDWSAKF-GTQSATYHCPSDLSEQEEKSMQQV 233
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
++ LG + R+D TE + ++N I GM + S
Sbjct: 234 VKAAYKALGCRGWGRVDVLL-----------------TENNDVYLIEMNTIPGMTERSVY 276
Query: 434 FQQASKVGFSHSNILRTIIGHA 455
A++ G ++ ++ ++ A
Sbjct: 277 PMAAAQAGLTYEALIAKLLDKA 298
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HGG+GE G +Q+LL+ +PY G GV+AS ++K+ T K
Sbjct: 56 VFIALHGGLGESGHIQALLDILQIPYVGSGVLASAISLNKLKT----------------K 99
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLC--------VKPARDGCSTGVAR 741
+V LL P V + + TS+ C +KP GCS GVA+
Sbjct: 100 EVWSANGLLTAPWVLV-RKSTSQSDILKACGEITFPVVIKPLNQGCSIGVAK 150
>gi|229588254|ref|YP_002870373.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens SBW25]
gi|229360120|emb|CAY46974.1| D-alanine--D-alanine ligase A [Pseudomonas fluorescens SBW25]
Length = 364
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 157/393 (39%), Gaps = 55/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
+RVG+I GG SAE +SL SAR+++D + ID+ + + ++ N
Sbjct: 4 VRVGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKAGHWHLNDTSNFLLNQEN 63
Query: 136 PADFDFKLES--LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA + LA G S+ L +VD++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNQSNRELAVVPGKASQQLVETSGTGLLEHVDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK + + G P L S + T L
Sbjct: 124 DLPFVGSDVLGSAVC---MDKDISKRLLRDAGIAVTPFITLTRSNATRTSFDTAVNTLGL 180
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ G A + L G D++V+VE ++ G E
Sbjct: 181 -----PMFVKPANQGSSVGVS-KVGTEAEYHAAVELAL-GFDEKVLVESAVK-GREIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL + HP+ G ++ ++Y KY+ Q P
Sbjct: 233 VLG-----NEHPIA----------SGCGEIVVSSGFYSYDSKYIDDQAAQVVVPAAISHD 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
IR A F+ LG AR+D + T+ G +L +IN +
Sbjct: 278 ASERIRGLAIEAFEVLGCSGLARVDVFL-----------------TDDGNVLINEINSLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G S+S ++ +I A R
Sbjct: 321 GFTRISMYPKLWQAAGMSYSELVSRLIELALER 353
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 105/466 (22%), Positives = 174/466 (37%), Gaps = 126/466 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRTRFEPVLIG--IDKAGHWHLNDT---SNF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A+ Q+V GL +H D
Sbjct: 58 LLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSGTGLLEH-----VD 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 725
CMDK I+K + R + TP + + ++ T
Sbjct: 138 CMDK----------------DISKRLLRDAGIAVTPFITLTRSNATRTSFDTAVNTLGLP 181
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
+ VKPA G S GV+++ + + H +E+ E ++
Sbjct: 182 MFVKPANQGSSVGVSKV----------------------GTEAEYHAAVELALGFDEKVL 219
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
E V KG EI V+G + S + V S
Sbjct: 220 VESAV---------------------KGR----EIECAVLGNEHPIASGCGEIVV--SSG 252
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
S + K+ + P A +S +A ++ + L G +R+D F+ D+G
Sbjct: 253 FYSYDSKYIDDQAAQVVVPAA--ISHDASERIRGLAIEAFEVLGCSGLARVDVFLT-DDG 309
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
VLI E+N++PG T + ++ L + M + ++++L ER
Sbjct: 310 NVLINEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIELALER 353
>gi|262197342|ref|YP_003268551.1| D-alanine--D-alanine ligase [Haliangium ochraceum DSM 14365]
gi|262080689|gb|ACY16658.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
Length = 333
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 123/293 (41%), Gaps = 81/293 (27%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+G++ GG S+E+ ISL + +V+ ++ V+ ++DR D
Sbjct: 5 RIGVLMGGLSSEKAISLATGDAVMASLEDRGYDVQKIFVDR------------------D 46
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D L AN+D+ F +HGRFGEDG IQ +LE +P+ G+G
Sbjct: 47 VDMALRQ----------------ANIDVAFIALHGRFGEDGCIQGLLETMGIPYTGSGVM 90
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN---------S 249
A A +K S EM + + PS ++V N++D +
Sbjct: 91 ASALAMNKAK-SKEMFRLHNLPTPS---------------YYVLNRVDEHDVLGCHGDFG 134
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
VVVKP GSS+GV++A + L + + D VVVE F+EG A++ D
Sbjct: 135 YPVVVKPLTEGSSVGVSLASTPEELLAACERAFV--FDHSVVVERFVEGMEVSVAVLED- 191
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
+ G+V+V + +F+Y KY + Y PPR
Sbjct: 192 ------------------RALGAVEVASEGPLFDYGAKYT-SGATEYIIPPRL 225
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 115/303 (37%), Gaps = 78/303 (25%)
Query: 628 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALN 685
+ L + N FIA+HG GEDG +Q LLE G+PYTG GVMAS M+K + L+
Sbjct: 49 MALRQANIDVAFIALHGRFGEDGCIQGLLETMGIPYTGSGVMASALAMNKAKSKEMFRLH 108
Query: 686 HLADLGVLTINK----DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+L +N+ DV P+V VKP +G S GV+
Sbjct: 109 NLPTPSYYVLNRVDEHDVLGCHGDFGYPVV----------------VKPLTEGSSVGVSL 152
Query: 742 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 801
E+L L C +F H ++ E FVE
Sbjct: 153 ASTPEEL------LAAC-----ERAFVFDHS-----------VVVERFVE---------- 180
Query: 802 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861
+E++V V+ + +V V G + K+ G +
Sbjct: 181 ---------------GMEVSVAVLED-----RALGAVEVASEGPLFDYGAKYTSGATEYI 220
Query: 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921
PP S + R L AL G SR+D V+ G I+EVNT+P + P
Sbjct: 221 IPPRLSPERYRGVLTQAVRAHL---ALDCSGASRVDMIVS-PTGNEYILEVNTLPALAPR 276
Query: 922 TVL 924
++L
Sbjct: 277 SLL 279
>gi|358446748|ref|ZP_09157290.1| D-alanine--D-alanine ligase [Corynebacterium casei UCMA 3821]
gi|356607331|emb|CCE55636.1| D-alanine--D-alanine ligase [Corynebacterium casei UCMA 3821]
Length = 357
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 161/395 (40%), Gaps = 54/395 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-------LNAYAISSAQV 131
RV +I GG S E +S +A +++ ++ + + I R I ++
Sbjct: 6 RVAVIYGGKSTEHSVSCVTAGAIMSNLDPERYEIVPIAITREGTWTIGVTEGLEIKDGKL 65
Query: 132 YSNTPADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
AD + + G G + L A +D+VFP +HG GEDG +Q V E +
Sbjct: 66 PEVEEAD-ELTVSLNPVGAGQIHNVTRGTLHAEIDVVFPALHGVNGEDGTVQGVFEMAGI 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG-SEVNESELSNWFVTNKLDPNS 249
P+VGTG + DK M +G +L+G +E+ E + +
Sbjct: 125 PYVGTGVMSSAVCMDKEFMRKLMVAEGLPVTRDVILRGRTELTAEEKEHLGL-------- 176
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVL 307
V VKP R GSSIGV+ + + ++ G I E DD+V+VE L G
Sbjct: 177 -PVFVKPARGGSSIGVS----KVSTWEELDGAIAEAASFDDKVIVEAELLGA-------- 223
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
+V G +P L V + G+ D E + + KYL V P F
Sbjct: 224 EVEVGVLEYPNGELVASVPAKLNGTEDSDE--GFYGFDTKYL-DNTVTATIPAPFDESTT 280
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+I++ A F+ L +R+D +F+ TE G ++ +IN + G
Sbjct: 281 KAIQDLAVDTFKALNCEGLSRVD-FFV----------------TEQGPMI-NEINTLPGF 322
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
S Q G S+ +L T+I A ++ N+
Sbjct: 323 TPISMYPQVFLASGVSYPELLDTLIATALAKAANI 357
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF A+HG GEDGT+Q + E G+PY G GVM+S CMDK + L L + +
Sbjct: 101 VFPALHGVNGEDGTVQGVFEMAGIPYVGTGVMSSAVCMDKEF----MRKLMVAEGLPVTR 156
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDL 748
DV I+ ELT++ + + VKPAR G S GV+++ E+L
Sbjct: 157 DV----------ILRGRTELTAEEKEHLGLPVFVKPARGGSSIGVSKVSTWEEL 200
>gi|322389127|ref|ZP_08062690.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903]
gi|321144169|gb|EFX39584.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903]
Length = 348
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 160/380 (42%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I V+ Y+I ++ + Q + PAD D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGD---FIQTQAFEEKPAD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VG G A
Sbjct: 64 KLMTNDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G ++ E + + L S V KP+ G
Sbjct: 124 VAMDKITTKRVLESAGIPQVPYVAVVEGDDLEEKIAA---IEATL---SYPVFTKPSNMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L+ A + + D RV+VE G +
Sbjct: 178 SSVGISKSENQTE-LRAALELAFK-YDSRVLVE-----------------QGVNAR---- 214
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ ++R
Sbjct: 215 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMAIPAQLDPEVVKTMRT 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G AR D ++ T+ G I ++N + G Q S
Sbjct: 271 NAEKAFRAIGGLGLARCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G ++++++ ++
Sbjct: 314 YPLLWDNMGLNYTDLITKLV 333
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 134/347 (38%), Gaps = 78/347 (22%)
Query: 616 DELPMRHSINEWIK------LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
DE M + +W K + KE A VF +HG +GEDG++Q LE +PY G G++
Sbjct: 62 DEKLMTNDTVDWSKKVAPSAIYKEG-AVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGIL 120
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
AS MDK+ T L G+ + + D L+ I I L+ + K
Sbjct: 121 ASSVAMDKITTKRVLES---AGIPQVPYVAVVEGDDLEEKIAAIEATLSYP-----VFTK 172
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
P+ G S G+++ +E+ T ALE L F
Sbjct: 173 PSNMGSSVGISK---SENQTELRAALE---------------------------LAF--- 199
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG----D 845
+ D + Q N EI VG++G + S +P VK+ D
Sbjct: 200 -KYDSRVLVEQGVNAR-------------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYD 244
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
++ K L P M T A E A+ G +R D F D G
Sbjct: 245 AKYIDNKITMAIPAQLDPEVVKTMRTNA--------EKAFRAIGGLGLARCD-FFYTDKG 295
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
E+ + E+NT+PG T + ++ L + + K+++LG E F
Sbjct: 296 EIFLNELNTMPGFTQWS--MYPLLWDNMGLNYTDLITKLVELGKEVF 340
>gi|407647493|ref|YP_006811252.1| D-alanine--D-alanine ligase [Nocardia brasiliensis ATCC 700358]
gi|407310377|gb|AFU04278.1| D-alanine--D-alanine ligase [Nocardia brasiliensis ATCC 700358]
Length = 330
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 158/394 (40%), Gaps = 77/394 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI----------DRNLNAYAIS 127
++V ++ GG +AER +S+ +A V ++ V Y DR + A +
Sbjct: 1 MQVAVLFGGTNAERDVSIATAGQVFRALRTRGHEVSAYDTTAGRLDADGEDRLMAATVPA 60
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
S D +L G +VD+VF +HG GE+G +Q +L+
Sbjct: 61 EPPQVSGAVPDVTMRLLCEQGGL-----------RDVDVVFLALHGGTGENGTMQGLLDL 109
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
VP+ G+G A A DK D S + + + P + + E ++ W
Sbjct: 110 AGVPYTGSGVLASAMAMDK-DVSKRLFRLAGVPTPDWEMAADEFDDR--LGW-------- 158
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI-ILEGIDDRVVVELFLEGGSEFTAIV 306
V+VKP + GS++G+TV V D + A+ + + DD V+VE F+ G EF V
Sbjct: 159 ---PVIVKPNKQGSTVGLTV---VKDPAQYAEAVRVARAHDDEVMVERFVP-GREFVVGV 211
Query: 307 LDVGSGFDCHPVVLLPTEV-ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
L G D P V E+ QGS IF+YR KY V P P
Sbjct: 212 L----GDD-------PLAVGEIIPQGS-------EIFDYRSKYQVGGAVEIF-PAEIPAE 252
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ + +R A + L L ++R+D + G + + N +
Sbjct: 253 LADEMRAQAVRAHRALKLGAYSRVD-----------------FRVDAAGDVWCLEANTLP 295
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
GM TS L Q A+ G + + I HA +
Sbjct: 296 GMTATSLLPQSAAAAGIDFAELCEQICLHALRKL 329
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 125/295 (42%), Gaps = 76/295 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF+A+HGG GE+GT+Q LL+ GVPYTG GV+AS MDK S L LA GV T +
Sbjct: 89 VFLALHGGTGENGTMQGLLDLAGVPYTGSGVLASAMAMDK-DVSKRLFRLA--GVPTPDW 145
Query: 698 DVRRKE--DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
++ E D L P++ VKP + G + G L +D Y +A+
Sbjct: 146 EMAADEFDDRLGWPVI----------------VKPNKQGSTVG---LTVVKDPAQYAEAV 186
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
+RAH DE++ +
Sbjct: 187 R----------VARAH--------------------DDEVMVERFVPGR----------- 205
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
E VGV+G L + + +I K+Q G + + P + + E D
Sbjct: 206 ---EFVVGVLGD----DPLAVGEIIPQGSEIFDYRSKYQVGGAVEIFP---AEIPAELAD 255
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
+ + + AL+L +SR+D V+ G+V +E NT+PGMT +++L A +
Sbjct: 256 EMRAQAVRAHRALKLGAYSRVDFRVDA-AGDVWCLEANTLPGMTATSLLPQSAAA 309
>gi|398942281|ref|ZP_10670219.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM41(2012)]
gi|398160833|gb|EJM49088.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM41(2012)]
Length = 364
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 160/405 (39%), Gaps = 79/405 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I GG SAE +SL SA++++D + ID+ + N P+
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSAKNIVDALDRSRFEPVLIGIDKQ--------GHWHLNDPS 55
Query: 138 DFDFKLES------------LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGG 180
+F E+ LA G S+ ++ + +VD++FP +HG GEDG
Sbjct: 56 NFLLNQENPALIALNQSNRELAVVPGKASQQLVETSSQEMLGHVDVIFPIVHGTLGEDGC 115
Query: 181 IQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
+Q +L ++PFVG+ GS C DK + + G P L + + +
Sbjct: 116 LQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFVTLTRATAARTGFA 172
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297
V KL + VKP GSS+GV+ + + G D++V+VE +
Sbjct: 173 E--VQGKLGL---PLFVKPANQGSSVGVSKVNDEAEYAAAVA--LALGFDEKVLVESAVR 225
Query: 298 GGSEFTAIVLD----VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 353
G E VL + SG C +V+ + ++Y KY+ Q
Sbjct: 226 -GREIECAVLGNEDAIASG--CGEIVV-----------------RSGFYSYDSKYIDAQA 265
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
P + IR A FQ LG AR+D + T+
Sbjct: 266 AEVVVPANISLEASERIRALAVEAFQVLGCSGLARVDVFL-----------------TDS 308
Query: 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G + S + G ++S ++ +I A +
Sbjct: 309 GEVLINEINSLPGFTRISMYPKLWQAAGMTYSELVSRLIDLALEK 353
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 102/462 (22%), Positives = 175/462 (37%), Gaps = 118/462 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P +A+ Q+V + + H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQEMLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
S CMDK I+K + R L TP V + ++
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRATAAR--------- 168
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
TG A + L ++VK P N S G+ ++ +
Sbjct: 169 -------TGFAEVQGKLGLPLFVK---------PANQGSSV-GVSKVNDEAEYAAAVALA 211
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 849
+ DE +++ + R EI V+G ++ S + V+ S
Sbjct: 212 LGFDE-------------KVLVESAVRGREIECAVLGNEDAIASGCGEIVVRSG--FYSY 256
Query: 850 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 909
+ K+ + P +S EA ++ + L G +R+D F+ D+GEVLI
Sbjct: 257 DSKYIDAQAAEVVVPAN--ISLEASERIRALAVEAFQVLGCSGLARVDVFLT-DSGEVLI 313
Query: 910 IEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
E+N++PG T + ++ L + M + +++DL E+
Sbjct: 314 NEINSLPGFT--RISMYPKLWQAAGMTYSELVSRLIDLALEK 353
>gi|427439475|ref|ZP_18924130.1| D-alanine--D-alanine ligase [Pediococcus lolii NGRI 0510Q]
gi|425788311|dbj|GAC44918.1| D-alanine--D-alanine ligase [Pediococcus lolii NGRI 0510Q]
Length = 354
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 164/393 (41%), Gaps = 68/393 (17%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHI--QGDDLLVRCYYIDRNLN-AYAISSAQVY 132
+ +++ ++ GG S ER +SL+S + D + +G + + ++ +L +
Sbjct: 2 KKMKIAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFKT 61
Query: 133 SNTPADFDFKLESLAQGF-------GSLSEFAEH---LAANVDIVFPTIHGRFGEDGGIQ 182
SNT +D++ + + L G++ F ++ + D VF +HG GE+G +Q
Sbjct: 62 SNTDSDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAADFVFLALHGGDGENGKVQ 121
Query: 183 EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242
VL+ ++ + G+G+ A A DK + M T +L + +L F
Sbjct: 122 AVLDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGF-- 179
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGG 299
VVVKP GSS+G + + + DSL+ A DD ++VE F+ G
Sbjct: 180 --------PVVVKPNSGGSSVGTMIVHDEEELADSLRDAY-----RFDDEIIVEEFIT-G 225
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
EF+ V V Q ++++ D ++Y K+ + TP
Sbjct: 226 REFSLGV------------------VNEQAMPAIEIVVNDGWYDYEHKFKTGTTTQFITP 267
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
P V + ++ A + LG+ ++ R+D FL + V+
Sbjct: 268 PDIDEEVHDEMKRVAVKTMKVLGMTNYGRVD--FLVNDQGVY----------------VI 309
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
+ N + GM S L Q+A G S+ ++ +II
Sbjct: 310 EANNLPGMTPLSLLPQEAEAAGISYEDLCESII 342
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 77/295 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF+A+HGG GE+G +Q++L+ + YTG G +AS MDK I+K
Sbjct: 106 VFLALHGGDGENGKVQAVLDLNDIKYTGSGTLASGIAMDK----------------AISK 149
Query: 698 DVRRKEDLLKTPIVDIWHE---LTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVK 753
++ D +KT + HE + +L + VKP G S G + E+L
Sbjct: 150 EIMLYND-IKTARFVVLHEEDGIHPQLDFGFPVVVKPNSGGSSVGTMIVHDEEELA---- 204
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
+S A+ DEI+ T +
Sbjct: 205 -----------DSLRDAYRF------------------DDEIIVEEFITGR--------- 226
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
E ++GV+ + MP++ + + E KF+ GT PP + E
Sbjct: 227 -----EFSLGVVNE-----QAMPAIEIVVNDGWYDYEHKFKTGTTTQFITPPD--IDEEV 274
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
D+ K+ L + + R+D VN D G V +IE N +PGMTP ++L +A
Sbjct: 275 HDEMKRVAVKTMKVLGMTNYGRVDFLVN-DQG-VYVIEANNLPGMTPLSLLPQEA 327
>gi|147677725|ref|YP_001211940.1| D-alanine--D-alanine ligase [Pelotomaculum thermopropionicum SI]
gi|190359201|sp|A5D2F9.1|DDL_PELTS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|146273822|dbj|BAF59571.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
[Pelotomaculum thermopropionicum SI]
Length = 318
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 158/377 (41%), Gaps = 75/377 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L+VG++ GG S+ER +SL + +V + ++ + L ID L+
Sbjct: 3 LKVGVLMGGRSSEREVSLKTGEAVYNALKVKNYL--AVKIDVGLDV-------------- 46
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+E + + +D+ F +HGR+GEDG IQ +LE ++P+ G+G
Sbjct: 47 -----VERIKE-------------ERIDLAFIALHGRYGEDGTIQGLLEMLDIPYTGSGV 88
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
A A DK + +G T P L++ E + L + ++ G +VVK
Sbjct: 89 LASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALKESLQAC--SERICREMGLPLVVKA 146
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GS+IG++ + D + + D +VE F+ G+E TA +L +
Sbjct: 147 PTQGSTIGMSFVHKEEDMAGALE--LAYDYDPVALVEQFIR-GTEVTASILG-----NEE 198
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH-TPPRFPIVVINSIREGAS 375
PV LP +++ +++Y+ KY T ++ H PPR P N+I++ A
Sbjct: 199 PVA-LPL---------IEIVSATGVYDYKAKY--TAGMSDHIIPPRIPEKQQNAIKKLAV 246
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ LG AR+D + + G ++N I GM TS
Sbjct: 247 STFKSLGCRGLARVD-----------------FIVDKQGNPFILEVNTIPGMTATSLFPD 289
Query: 436 QASKVGFSHSNILRTII 452
A G +++ ++
Sbjct: 290 AARAAGIEFPDLIEKLV 306
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 121/297 (40%), Gaps = 59/297 (19%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
++ +E FIA+HG GEDGT+Q LLE +PYTG GV+AS MDK AT
Sbjct: 49 RIKEERIDLAFIALHGRYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAAT-------- 100
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
K + + E L P + L K +K + CS R+C L
Sbjct: 101 --------KKIIQYEGLPTPPFM---------LVEKKEALKESLQACSE---RICREMGL 140
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
+ VKA P S GM FV +E + + + D
Sbjct: 141 PLVVKA---------PTQGSTI-GM--------------SFVHKEEDMAGALELAYDYDP 176
Query: 809 L-MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
+ + + R E+T ++G + +P + + + + + K+ G ++ PP
Sbjct: 177 VALVEQFIRGTEVTASILGNEEPVA--LPLIEIVSATGVYDYKAKYTAGMSDHIIPPRIP 234
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
A+ K +L G +R+D V+ G I+EVNT+PGMT +++
Sbjct: 235 EKQQNAIKKLAVS---TFKSLGCRGLARVDFIVD-KQGNPFILEVNTIPGMTATSLF 287
>gi|6634594|emb|CAB64487.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
Length = 347
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 166/387 (42%), Gaps = 63/387 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGD---FIKTQEFSQTPGQED- 62
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + A + +VFP +HG GEDG +Q LE +P+VG +
Sbjct: 63 RLMTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSS 122
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V ++++ V KL + V KP+ G
Sbjct: 123 LAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---AYPVFTKPSNMG 176
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L++A + + D RV+VE G +
Sbjct: 177 SSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR---- 213
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ +R+
Sbjct: 214 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAVMRQ 269
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 270 NAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 312
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+S+++ ++ A F
Sbjct: 313 YPLLWDNMGISYSDLIEHLVDLAKQSF 339
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 111/287 (38%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKL-----AYPVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 308
>gi|418117343|ref|ZP_12754312.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 6963-05]
gi|353788024|gb|EHD68422.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 6963-05]
Length = 347
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 165/387 (42%), Gaps = 63/387 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQED- 62
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + A + +VFP +HG GEDG +Q LE +P+VG +
Sbjct: 63 RLMTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLRMPYVGCNILSSS 122
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V ++++ V KL + V KP+ G
Sbjct: 123 LAMDKITTKRVLESTGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPSNMG 176
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L++A + + D RV+VE G +
Sbjct: 177 SSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR---- 213
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ +R+
Sbjct: 214 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAVMRQ 269
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 270 NAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 312
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+ +++ ++ A F
Sbjct: 313 YPLLWDNMGISYPDLIERLVDLAKESF 339
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLRMPYVGCNILSSSLAMDKITTKRVLES---TGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
>gi|307702298|ref|ZP_07639256.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
gi|307624101|gb|EFO03080.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
Length = 347
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/398 (24%), Positives = 168/398 (42%), Gaps = 85/398 (21%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA---- 137
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 138 -------DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
D+D K+ + S E A +VFP +HG GEDG +Q LE +
Sbjct: 64 LMTNDTIDWDKKI--------APSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKM 111
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNS 249
P+VG + A DK + G VP +++G +V S+++ V KL +
Sbjct: 112 PYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-SKIAE--VEEKL---T 165
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V KP+ GSS+G++ + + L++A + + D RV+VE
Sbjct: 166 YPVFTKPSNMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE---------------- 207
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPR 361
G + E+E+ G+ DV+ KD A ++Y KY+ ++ P +
Sbjct: 208 -QGVNAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAK 258
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
V+ +R+ A + F+ +G +R D ++ T+ G I ++
Sbjct: 259 ISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNEL 301
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
N + G Q S +G S+ ++ ++ A F
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLAKQSF 339
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 116/287 (40%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTSKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E+ A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAVMRQNAEIAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 308
>gi|443287900|ref|ZP_21026995.1| D-alanine--D-alanine ligase [Micromonospora lupini str. Lupac 08]
gi|385881987|emb|CCH22088.1| D-alanine--D-alanine ligase [Micromonospora lupini str. Lupac 08]
Length = 333
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 155/385 (40%), Gaps = 76/385 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRV ++ GG S ER +SL S R VLD + R ++ L
Sbjct: 20 LRVLVLAGGLSYERDVSLRSGRRVLDAL-------RAVGVEAELR--------------- 57
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D L L A A D V +HG GEDG ++ VL+ +P+VG +
Sbjct: 58 DADVAL---------LPALA---ADPPDAVVIALHGATGEDGSLRGVLDLCGIPYVGCDA 105
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
RA R A+DK A + + G T P ++ + SEL V +++ G ++VKP
Sbjct: 106 RASRLAWDKPSAKAVLREAGIPT-PDWVALPHD-RFSELGAVAVLDRIADRLGLPLMVKP 163
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGII-LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
+ GS +G V V D+ ++ D +VE ++ G + V+D+G G
Sbjct: 164 AQGGSGLGAAV---VRDAASLPAAMVGCFAYDSTALVERYVPG-MDVAVSVIDLGDG--- 216
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P L P E+ ++ +++Y +Y + +H P R V S+ + A
Sbjct: 217 -PQALPPVEIV----------PRNGVYDYAARYT-AGRTTWHAPARLEPDVAASVADVAL 264
Query: 376 LLFQRLGLCDFARIDGWF-LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
LGL D +R+D HV ++N+ GM +TS L
Sbjct: 265 AAHTALGLRDLSRVDVIVDAAGQPHVL------------------EVNVSPGMTETSLLP 306
Query: 435 QQASKVGFSHSNILRTIIGHACSRF 459
G +L +++ A +R
Sbjct: 307 LAVQAAGLDFGRLLGSLVNRAAARV 331
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
LA + V IA+HG GEDG+L+ +L+ G+PY G AS+ DK + L +
Sbjct: 67 LAADPPDAVVIALHGATGEDGSLRGVLDLCGIPYVGCDARASRLAWDKPSAKAVLR---E 123
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
G+ T + + + V + + +L L VKPA+ G G A
Sbjct: 124 AGIPTPDWVALPHDRFSELGAVAVLDRIADRLGLP-LMVKPAQGGSGLGAA 173
>gi|406981194|gb|EKE02703.1| hypothetical protein ACD_20C00346G0030 [uncultured bacterium]
Length = 317
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 156/383 (40%), Gaps = 85/383 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++G++CGG S+ER +SL S ++ + ++ R Y NA I + S T D
Sbjct: 15 KIGVLCGGMSSEREVSLRSGKNCFEALK------RLGY----ENAELIDVNKDISKTLTD 64
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
N++I + +HG++GEDG IQ +LE +P+ G G +
Sbjct: 65 -----------------------KNIEIAYIALHGKYGEDGCIQGLLEILGIPYTGCGVK 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQG-SEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A A DK + Q +PS +++ E+ E LS + +++KP
Sbjct: 102 ASAIAMDKEYTKRILKTQHLPVIPSVVIRSLEELKEKPLSLNY----------PLMIKPV 151
Query: 258 RAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
GSSIG V + +++K A+ E V++E ++ G S T VLD+ S
Sbjct: 152 SEGSSIGMSKVNSETELEEAIKSAQNFQTE-----VMLEEYITGKS-ITVGVLDINSETI 205
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
P+ L+F R K ++Y KY + P P + I++ +
Sbjct: 206 ATPI--------LEF------RTKTEWYDYEAKY-THGMTEFILPAEIPQGLTEDIKDLS 250
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+G +R+D V S + Y +IN I GM S L
Sbjct: 251 VKAHNAIGAKGMSRVD--------FVLSQNNVPY---------ILEINTIPGMTDLSDLP 293
Query: 435 QQASKVGFSHSNILRTIIGHACS 457
QA + + N+++ I+ A S
Sbjct: 294 AQARAMEIDYDNLVKIILDSAIS 316
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 130/320 (40%), Gaps = 70/320 (21%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
G++ A+ + + I++ L +N +IA+HG GEDG +Q LLE G+PYTG GV A
Sbjct: 45 GYENAELIDVNKDISK--TLTDKNIEIAYIALHGKYGEDGCIQGLLEILGIPYTGCGVKA 102
Query: 671 SKTCMDKVATS--LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728
S MDK T L HL + + I R E+L + P+ + L +
Sbjct: 103 SAIAMDKEYTKRILKTQHLPVIPSVVI----RSLEELKEKPLSLNY----------PLMI 148
Query: 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788
KP +G S G++++ +L +K+ + F+
Sbjct: 149 KPVSEGSSIGMSKVNSETELEEAIKSAQN----------------------------FQ- 179
Query: 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 848
E++ T K+ ITVGV+ S P + + +
Sbjct: 180 ----TEVMLEEYITGKS--------------ITVGVL-DINSETIATPILEFRTKTEWYD 220
Query: 849 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
E K+ G + P TE + + NA+ +G SR+D FV N
Sbjct: 221 YEAKYTHGMTEFILPAEIPQGLTEDIKDLSVKAH---NAIGAKGMSRVD-FVLSQNNVPY 276
Query: 909 IIEVNTVPGMTPSTVLIHQA 928
I+E+NT+PGMT + L QA
Sbjct: 277 ILEINTIPGMTDLSDLPAQA 296
>gi|270291006|ref|ZP_06197229.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4]
gi|418069561|ref|ZP_12706838.1| D-alanine--D-alanine ligase [Pediococcus acidilactici MA18/5M]
gi|270280402|gb|EFA26237.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4]
gi|357536092|gb|EHJ20123.1| D-alanine--D-alanine ligase [Pediococcus acidilactici MA18/5M]
Length = 351
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 163/391 (41%), Gaps = 68/391 (17%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHI--QGDDLLVRCYYIDRNLN-AYAISSAQVYSN 134
+++ ++ GG S ER +SL+S + D + +G + + ++ +L + SN
Sbjct: 1 MKIAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSN 60
Query: 135 TPADFDFKLESLAQGF-------GSLSEFAEH---LAANVDIVFPTIHGRFGEDGGIQEV 184
T +D++ + + L G++ F ++ + D VF +HG GE+G +Q V
Sbjct: 61 TDSDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAADFVFLALHGGDGENGKVQAV 120
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
L+ ++ + G+G+ A A DK + M T +L + +L F
Sbjct: 121 LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGF---- 176
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
VVVKP GSS+G + + + DSL+ A DD ++VE F+ G E
Sbjct: 177 ------PVVVKPNSGGSSVGTMIVHDEEELADSLRDAY-----RFDDEIIVEEFIT-GRE 224
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
F+ V V Q ++++ D ++Y K+ + TPP
Sbjct: 225 FSLGV------------------VNEQAMPAIEIVVNDGWYDYEHKFKTGTTTQFITPPD 266
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
V + ++ A + LG+ ++ R+D FL + V+ +
Sbjct: 267 IDEEVHDEMKRVAVKTMKVLGMTNYGRVD--FLVNDQGVY----------------VIEA 308
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTII 452
N + GM S L Q+A G S+ ++ +II
Sbjct: 309 NNLPGMTPLSLLPQEAEAAGISYEDLCESII 339
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 77/295 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF+A+HGG GE+G +Q++L+ + YTG G +AS MDK I+K
Sbjct: 103 VFLALHGGDGENGKVQAVLDLNDIKYTGSGTLASGIAMDK----------------AISK 146
Query: 698 DVRRKEDLLKTPIVDIWHE---LTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVK 753
++ D +KT + HE + +L + VKP G S G + E+L
Sbjct: 147 EIMLYND-IKTARFVVLHEEDGIHPQLDFGFPVVVKPNSGGSSVGTMIVHDEEELA---- 201
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
+S A+ DEI+ T +
Sbjct: 202 -----------DSLRDAYRF------------------DDEIIVEEFITGR--------- 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
E ++GV+ + MP++ + + E KF+ GT PP + E
Sbjct: 224 -----EFSLGVVNE-----QAMPAIEIVVNDGWYDYEHKFKTGTTTQFITPPD--IDEEV 271
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
D+ K+ L + + R+D VN D G V +IE N +PGMTP ++L +A
Sbjct: 272 HDEMKRVAVKTMKVLGMTNYGRVDFLVN-DQG-VYVIEANNLPGMTPLSLLPQEA 324
>gi|227877871|ref|ZP_03995887.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01]
gi|256844272|ref|ZP_05549758.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN]
gi|256849329|ref|ZP_05554762.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US]
gi|262047654|ref|ZP_06020608.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US]
gi|293380562|ref|ZP_06626621.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1]
gi|312976971|ref|ZP_07788720.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05]
gi|423319803|ref|ZP_17297678.1| D-alanine-D-alanine ligase [Lactobacillus crispatus FB049-03]
gi|423320188|ref|ZP_17298060.1| D-alanine-D-alanine ligase [Lactobacillus crispatus FB077-07]
gi|227862533|gb|EEJ70036.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01]
gi|256613350|gb|EEU18553.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN]
gi|256714105|gb|EEU29093.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US]
gi|260572054|gb|EEX28620.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US]
gi|290922876|gb|EFD99819.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1]
gi|310896299|gb|EFQ45364.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05]
gi|405586824|gb|EKB60568.1| D-alanine-D-alanine ligase [Lactobacillus crispatus FB049-03]
gi|405608986|gb|EKB81897.1| D-alanine-D-alanine ligase [Lactobacillus crispatus FB077-07]
Length = 360
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 157/392 (40%), Gaps = 53/392 (13%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ L+VGLI GG S+E +S+ S R++ I D V +I N +A
Sbjct: 3 KKLQVGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWI-TNEGYFANEEESFKVLD 61
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+ K +L E E+L +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 62 DPSYQVKNPHKVNNISNLIEL-ENLP-EIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGD 119
Query: 196 GSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
DK + + G +I++ F + + ++L+ V KL +
Sbjct: 120 DVLGAAVTMDKEFTKILAQRVGVPVADWISIKRF--EYDDKKNAKLNYEKVAEKLGRD-- 175
Query: 251 KVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ VKP+ GSS+G VT A +LK+A DD+V+VE + G TA++
Sbjct: 176 -MFVKPSNQGSSVGVSHVTNADEYTAALKEAF-----KYDDKVLVEETVPGTEVETAVL- 228
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
G D P+V ++ K + + Y KY P P +I
Sbjct: 229 ----GND-KPIVAGVGQI---------TNAKGSFYTYENKYDDNSTSKLQIPADLPQEII 274
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+++RE A ++ ARID P G ++ T++N + G
Sbjct: 275 DTVRENARKVYAATECSGMARIDSMLTPG-----------------GKVVLTEVNALPGF 317
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G +S ++ +I RF
Sbjct: 318 TNISMYPKLFEEAGVPYSELITRLIEAGMDRF 349
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 135/337 (40%), Gaps = 67/337 (19%)
Query: 622 HSINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
++I+ I+L + VF VHG +GEDG LQ L P+ G V+ + MDK T
Sbjct: 74 NNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAVTMDKEFT 133
Query: 681 SLALNH----LAD-LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 735
+ +AD + + D ++ L + ++ KL + + VKP+ G
Sbjct: 134 KILAQRVGVPVADWISIKRFEYDDKKNAKL-------NYEKVAEKL-GRDMFVKPSNQGS 185
Query: 736 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795
S GV+ + A++ Y AL+E
Sbjct: 186 SVGVSHVTNADE---YTAALKEAF------------------------------------ 206
Query: 796 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 855
K D+++ + E+ V+G + + + +T G + E K+
Sbjct: 207 --------KYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQIT-NAKGSFYTYENKYDD 257
Query: 856 GTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915
+ L P + + E +D ++ + A + G +RID+ + G+V++ EVN +
Sbjct: 258 NSTSKLQIP--ADLPQEIIDTVRENARKVYAATECSGMARIDSML-TPGGKVVLTEVNAL 314
Query: 916 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
PG T + ++ L E+ + + ++++ G +RF
Sbjct: 315 PGFT--NISMYPKLFEEAGVPYSELITRLIEAGMDRF 349
>gi|443642618|ref|ZP_21126468.1| D-alanine--D-alanine synthase A [Pseudomonas syringae pv. syringae
B64]
gi|443282635|gb|ELS41640.1| D-alanine--D-alanine synthase A [Pseudomonas syringae pv. syringae
B64]
Length = 363
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 160/390 (41%), Gaps = 55/390 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S+E +SL SAR+V++ I + + +D+ A N
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64
Query: 140 DFKLESLAQGFGSL-----SEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
KL + + L +F E A +D+VFP IHG FGEDG +Q +L V
Sbjct: 65 RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPN 248
PFVG + DK D + + + ITV F L +G ++ +E + D
Sbjct: 125 PFVGADVLSSAVCMDK-DVTKRLLRDAGITVAPFRVLSRGDSLSFTEAA--------DQL 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ VKP GSS+GV+ V D A + L D +L +E G
Sbjct: 176 GLPMFVKPANQGSSVGVS---KVSDEAGFAAALALGFEFDH---KLLIEQGI-------- 221
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
VG +C VL +V++ G +V D + Y KYL Q P P + +
Sbjct: 222 VGREVEC--AVLGNVDVQVSVCG--EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSD 277
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+RE A ++ LG +R+D +F+ TE I+ ++N + G
Sbjct: 278 QVREVALQAYKVLGCAGLSRVD-FFV----------------TEGRDIVINEVNTLPGFT 320
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G S++ ++ +I A R
Sbjct: 321 SISMYPKLWQASGLSYAELIHRLIVLALER 350
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ LL VP+ G V++S CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLSSAVCMDKDVTK---RLLRDAGITVAP 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
V + D L + E +L + VKPA G S GV+++
Sbjct: 157 FRVLSRGDSLS------FTEAADQLGLP-MFVKPANQGSSVGVSKV 195
>gi|384109903|ref|ZP_10010759.1| D-alanine--D-alanine ligase [Treponema sp. JC4]
gi|383868547|gb|EID84190.1| D-alanine--D-alanine ligase [Treponema sp. JC4]
Length = 377
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 156/394 (39%), Gaps = 39/394 (9%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ + +I GG S E ISL SA S++ +I+ ++ ++ I ++ Y S A+ Y
Sbjct: 1 MNICVIYGGKSGEHEISLISAASIVRNIKKENKVI-LIGIAKDGKWYLQSDAE-YERVLK 58
Query: 138 DFDF---------KLESLAQGFGSLS-EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+ D KL S+ G G S A+ N+D+VFP +HG +GEDG IQ + E
Sbjct: 59 EKDSPLKITEDKNKLVSVLPGAGKASFAAADGTKLNIDVVFPALHGTYGEDGTIQGLFEM 118
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
+P+VG A DK + G VP ++ + S + + F+
Sbjct: 119 AEIPYVGCTHMASAVTMDKEKTKMLWESAGLPVVPYVCMKRHVMLNSSVYDEFIEATEKE 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAI 305
+ VKP AGSS G + A ++ K+ I+E DD++++E + E
Sbjct: 179 LGYPMFVKPCGAGSSNGASKA----NNRKELSFAIMEAFLWDDKILIEKSINNAREIECS 234
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
V F P EV G +++ +++ KY P
Sbjct: 235 VTGNSVTF---PAESETEEVLAYVPG--EIKPTHEFYDFDAKYNDENGALLVIPAELSED 289
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
I IR+ A ++ L +R+D + VF +IN +
Sbjct: 290 GIEKIRKTACAAYRVLDCTGLSRVDFLIDKDTNQVF----------------LNEINTMP 333
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G S + G +++++ +I +R+
Sbjct: 334 GFTSISMFPKMCDAAGLKYADLIDLLIDEGIARY 367
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 115/288 (39%), Gaps = 43/288 (14%)
Query: 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 691
K N VF A+HG GEDGT+Q L E +PY G MAS MDK T + G
Sbjct: 92 KLNIDVVFPALHGTYGEDGTIQGLFEMAEIPYVGCTHMASAVTMDKEKTKMLWESA---G 148
Query: 692 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751
+ + ++ +L + + D + E T K + VKP G S G ++ ++L
Sbjct: 149 LPVVPYVCMKRHVMLNSSVYDEFIEATEKELGYPMFVKPCGAGSSNGASKANNRKEL--- 205
Query: 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
SF+ I E F+ D+IL N
Sbjct: 206 --------------SFA----------------IMEAFLWDDKILIEKSINNAREIECSV 235
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
GNS +T + + + +P +K + + + K+ G L P +S
Sbjct: 236 TGNS----VTFPAESETEEVLAYVPG-EIKPTHEFYDFDAKYNDENGALLVIPAE--LSE 288
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ ++K ++ L G SR+D ++ D +V + E+NT+PG T
Sbjct: 289 DGIEKIRKTACAAYRVLDCTGLSRVDFLIDKDTNQVFLNEINTMPGFT 336
>gi|390950629|ref|YP_006414388.1| D-alanine--D-alanine ligase [Thiocystis violascens DSM 198]
gi|390427198|gb|AFL74263.1| D-alanine--D-alanine ligase [Thiocystis violascens DSM 198]
Length = 318
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 151/380 (39%), Gaps = 83/380 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG +AER ISL S R+VL +Q + ++A+ P D
Sbjct: 21 KVAVLLGGRAAEREISLKSGRAVLAALQ-----------RQGVDAH-----------PLD 58
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D + A+ A D F +HGR GEDG IQ LE +P+ G+G
Sbjct: 59 PDATV------------LAQLRAGGYDRAFIVLHGRGGEDGQIQGALETMGLPYTGSGVL 106
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
DKY L + G T S LL+G + + F +++KP
Sbjct: 107 GSALGMDKYRCKLAWAGCGLPTAESVLLRGEADLPAAAALGF----------PLMIKPVH 156
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIG+ +D+L++A E DD V+ E +++ G+E+T +L G + P+
Sbjct: 157 EGSSIGMARVE-TVDALEQAWRSASE-FDDLVLAERWIQ-GAEYTCAIL----GREALPL 209
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+ L T +A +++ KY + YH P + +R+ + F
Sbjct: 210 IRLET--------------PNAFYDFEAKYQANSTL-YHCPCGLDATAESRLRQLSLDAF 254
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ +G + R+D + T G +IN + GM S + A
Sbjct: 255 EAVGASGWGRVD--LMLDGT---------------GRPFLLEINTVPGMTDHSLVPMAAR 297
Query: 439 KVGFSHSNILRTIIGHACSR 458
G + I+ + SR
Sbjct: 298 AAGIDFDALALRILDTSLSR 317
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 112/291 (38%), Gaps = 77/291 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
FI +HG GEDG +Q LE G+PYTG GV+ S MDK LA A G+ T
Sbjct: 75 AFIVLHGRGGEDGQIQGALETMGLPYTGSGVLGSALGMDKYRCKLA---WAGCGLPTAES 131
Query: 698 DVRRKE-DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ R E DL + L +KP +G S G+AR+ V ALE
Sbjct: 132 VLLRGEADLPAAAALGF-----------PLMIKPVHEGSSIGMARV-------ETVDALE 173
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ + E D+++ + R
Sbjct: 174 QA---------------------------WRSASEFDDLVLA----------------ER 190
Query: 817 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
W+ E T ++G+ +P + ++ E K+Q + + P + A
Sbjct: 191 WIQGAEYTCAILGR-----EALPLIRLETPNAFYDFEAKYQANSTLYHCP---CGLDATA 242
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ +Q A+ G+ R+D ++ G ++E+NTVPGMT +++
Sbjct: 243 ESRLRQLSLDAFEAVGASGWGRVDLMLD-GTGRPFLLEINTVPGMTDHSLV 292
>gi|293365895|ref|ZP_06612598.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
gi|291315573|gb|EFE56023.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
Length = 372
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/423 (23%), Positives = 178/423 (42%), Gaps = 85/423 (20%)
Query: 57 RASAEVLEDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116
R+ ++L+++ + + L+ GG SAER +S+ SA SV+ + D V+ ++
Sbjct: 7 RSKYDILKNEYSIRIGTNNMKQTIILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFF 66
Query: 117 IDRNLNAYAISSAQVYSNTPA-----------DFDFKLESLAQGFGSLSEFAEHLAANVD 165
I ++ + Q +S TP D+D K+ + S E A
Sbjct: 67 ISQSGD---FIKTQEFSQTPGQEDRLMTNDTIDWDKKI--------APSAIYEEGA---- 111
Query: 166 IVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF- 224
+VFP +HG GEDG +Q LE +P+VG + A DK + G VP
Sbjct: 112 VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVA 171
Query: 225 LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE 284
+++G +V S+++ V KL + V KP+ GSS+G++ + + L++A + +
Sbjct: 172 IVEGDDVT-SKIAE--VEEKL---TYPVFTKPSNMGSSVGISKSENQ-EELRQALELAFQ 224
Query: 285 GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE------- 337
D RV+VE G + E+E+ G+ DV+
Sbjct: 225 -YDSRVLVE-----------------QGVNAR-------EIEVGLLGNYDVKSTLPGEVV 259
Query: 338 KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396
KD A ++Y KY+ ++ P + V+ +R+ A + F+ +G +R D ++
Sbjct: 260 KDVAFYDYDAKYI-DNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFY--- 315
Query: 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 456
T+ G I ++N + G Q S +G S+ ++ ++ A
Sbjct: 316 --------------TDKGEIFLNELNTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLAK 361
Query: 457 SRF 459
F
Sbjct: 362 QSF 364
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 116/287 (40%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 108 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 164
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 165 AQVPYVAIVEGDDVTSKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELR--- 216
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 217 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 238
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 239 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 287
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E+ A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 288 VVAVMRQNAEIAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 333
>gi|406947098|gb|EKD78095.1| hypothetical protein ACD_42C00043G0001 [uncultured bacterium]
Length = 353
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 157/394 (39%), Gaps = 67/394 (17%)
Query: 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP 136
+L V ++CGG S E ISL SA++V++ + V I++N A +Y P
Sbjct: 4 LLSVLVLCGGQSTEHDISLLSAKNVIERLDSKKYRVSVVKIEQN-------GAWIYFENP 56
Query: 137 ADFDFKLESLAQGF---GSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
+ + A F + VD +FP +HG GEDG +Q +LE +P+V
Sbjct: 57 QSYFEHAHAHAMQIIPGNKTPFFVNNQPVPVDCIFPVLHGTNGEDGTMQGLLELLPIPYV 116
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G + A DK A M G + V +++ S +S ++ + +L G VV
Sbjct: 117 GADCLSSAIAMDKDIAKRLMRLAGILVVDWKIVRKS---DSTINYATIKKQL----GDVV 169
Query: 254 -VKPTRAGSSIGVTVA------YGVI-DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
VKP GSS+GV A Y I D+ + + I++E + +V G E
Sbjct: 170 FVKPNSLGSSVGVKKATDEQSFYAAIADAFRYDEYILIE----KAIV------GREIECS 219
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL + +P LP E + ++Y KYL TP
Sbjct: 220 VLG-----NENPTASLPGE----------IINHTEFYSYNAKYLDDAAATVKTPADLSPE 264
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+I + A +Q L AR+D +FL ++ I +IN I
Sbjct: 265 LIAQFQMLAVKAYQTLRCFGMARVD-FFL----------------NQYNKIYINEINTIP 307
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G S + G S+S +L +I A RF
Sbjct: 308 GFTNISMYPKNWEVSGLSYSALLDELISLAIKRF 341
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 107/282 (37%), Gaps = 61/282 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDGT+Q LLE +PY G ++S MDK +A + G+L ++
Sbjct: 90 IFPVLHGTNGEDGTMQGLLELLPIPYVGADCLSSAIAMDK---DIAKRLMRLAGILVVDW 146
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ RK D I + K + VKP G S GV KA +E
Sbjct: 147 KIVRKSD------STINYATIKKQLGDVVFVKPNSLGSSVGVK------------KATDE 188
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
SF A I + F + IL +
Sbjct: 189 -------QSFYAA--------------IADAFRYDEYILIEKAIVGR------------- 214
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V+G SL P + + + S K+ + P + +S E + +
Sbjct: 215 -EIECSVLGNENPTASL-PGEIINHT-EFYSYNAKYLDDAAATVKTP--ADLSPELIAQF 269
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ L+ G +R+D F+N N ++ I E+NT+PG T
Sbjct: 270 QMLAVKAYQTLRCFGMARVDFFLNQYN-KIYINEINTIPGFT 310
>gi|119718908|ref|YP_925873.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
gi|119539569|gb|ABL84186.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
Length = 323
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 149/378 (39%), Gaps = 72/378 (19%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
++ GG S ER +SL S R V + ++ L V +R+++A + A + P
Sbjct: 13 VLAGGLSHERDVSLRSGRRVAEALRATGLEV----TERDVDASLL--ATLRDERP----- 61
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
D V P +HG GEDG I+E+LE VP+VG ACR
Sbjct: 62 -----------------------DCVVPMLHGETGEDGAIREILELLGVPYVGAPPAACR 98
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAG 260
AFDK A +++ G +T S L EL V L G ++VKPTR+G
Sbjct: 99 VAFDKPVAKAVVARAGVLTPESVCLPHETFR--ELGAGAVMAALVDRLGLPLMVKPTRSG 156
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
S++G TV + L A + D ++E F+ G E V+D GSG P
Sbjct: 157 SALGCTVVR-TAEQLPAAM-VSAFAYGDVALLERFVP-GMEVAVPVVDDGSGARALP--- 210
Query: 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
+V ++ +++Y +Y + TP + + A L +
Sbjct: 211 -----------AVAIQPDGGVYDYTARYT-AGATEFVTPAPLSEELAAEVARVALLAHEV 258
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
LGL D +R D G + F ++N+ G +TS +
Sbjct: 259 LGLRDVSRSDLII-----------------DHEGRVWFLEVNVAPGFTETSTVPLAIQAA 301
Query: 441 GFSHSNILRTIIGHACSR 458
G + +++ A +R
Sbjct: 302 GLDLGKVCASMVQAAAAR 319
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 114/296 (38%), Gaps = 58/296 (19%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L E V +HG GEDG ++ +LE GVPY G A + DK +A +A
Sbjct: 56 LRDERPDCVVPMLHGETGEDGAIREILELLGVPYVGAPPAACRVAFDK---PVAKAVVAR 112
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
GVLT E + + L +L L VKP R G + G + AE L
Sbjct: 113 AGVLTPESVCLPHETFRELGAGAVMAALVDRLGLP-LMVKPTRSGSALGCTVVRTAEQLP 171
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
+ ++F A+G ++ + E FV
Sbjct: 172 AAMV-----------SAF--AYG---------DVALLERFVP------------------ 191
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
+E+ V V+ GS +P+V ++ G + ++ G +TP P S
Sbjct: 192 -------GMEVAVPVVDD-GSGARALPAVAIQPDGGVYDYTARYTAGATEFVTPAPLS-- 241
Query: 870 STEALDKCKQRIELIAN-ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
E L R+ L+A+ L L SR D ++ G V +EVN PG T ++ +
Sbjct: 242 --EELAAEVARVALLAHEVLGLRDVSRSDLIID-HEGRVWFLEVNVAPGFTETSTV 294
>gi|336179523|ref|YP_004584898.1| D-alanine--D-alanine ligase [Frankia symbiont of Datisca glomerata]
gi|334860503|gb|AEH10977.1| D-alanine--D-alanine ligase [Frankia symbiont of Datisca glomerata]
Length = 385
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 42/295 (14%)
Query: 164 VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223
VD+VFP +HG FGEDG +Q +LE VP+VG+G A A DK + ++ G P
Sbjct: 122 VDVVFPLLHGPFGEDGTVQGLLEMAAVPYVGSGVFASAAAMDKQYMKILLAAAGLDIGPY 181
Query: 224 FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID---SLKKAKG 280
+L+ + + V VKP R GSSIG++ D +LK A+
Sbjct: 182 TVLRAGQALSGDDRERLGL--------PVFVKPARGGSSIGISRVDAWDDLATALKAAR- 232
Query: 281 IILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDA 340
+D +V+VE + G E VL GS P LP EV +
Sbjct: 233 ----AVDPKVLVEAAVV-GREVECGVL--GSLDGGGPEASLPAEVTVASSAG-----SAG 280
Query: 341 IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHV 400
+++ KYL + + P P V ++R+ A F L AR+D + P
Sbjct: 281 FYDFEAKYL-SDAARFDVPANLPAEVTAAVRQIAVRAFVALDCAGLARVDVFVRPD---- 335
Query: 401 FSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
G+++ ++N + G TS + + G + ++ ++ A
Sbjct: 336 -------------GSVVVNEVNTMPGFTPTSMFPRMWAATGLDYPRLVDRLVALA 377
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 113/294 (38%), Gaps = 70/294 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTIN 696
VF +HG GEDGT+Q LLE VPY G GV AS MDK + L D+G T+
Sbjct: 125 VFPLLHGPFGEDGTVQGLLEMAAVPYVGSGVFASAAAMDKQYMKILLAAAGLDIGPYTV- 183
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+R + L + +L VKPAR G S G++R+ +DL +KA
Sbjct: 184 --LRAGQAL--------SGDDRERLGLPVF-VKPARGGSSIGISRVDAWDDLATALKAAR 232
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
P++L+ V
Sbjct: 233 AV---------------------DPKVLVEAAVVGR------------------------ 247
Query: 817 WVEITVGVIGKC---GSMHSLMPSVTVKE---SGDILSLEEKFQGGTGINLTPPPASIMS 870
E+ GV+G G SL VTV S E K+ P
Sbjct: 248 --EVECGVLGSLDGGGPEASLPAEVTVASSAGSAGFYDFEAKYLSDAARFDVPANLPAEV 305
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
T A+ + R + AL G +R+D FV D G V++ EVNT+PG TP+++
Sbjct: 306 TAAVRQIAVRAFV---ALDCAGLARVDVFVRPD-GSVVVNEVNTMPGFTPTSMF 355
>gi|406996671|gb|EKE14966.1| D-alanine-D-alanine ligase [uncultured bacterium]
Length = 387
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 142/329 (43%), Gaps = 40/329 (12%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYA---ISSAQVYSNTP 136
+G+ G S E +S+ + + ++ ++ V YID+ Y+ +SS + ++ P
Sbjct: 4 IGVFFGSRSPEHDVSILTGQLIISGLKKCGYNVIPVYIDKKGKWYSDARLSSMKFFTQNP 63
Query: 137 ADFDFKLESLAQGF----GSLSEFAEHLAANV--DIVFPTIHGRFGEDGGIQEVLEKYNV 190
D D KLES F G + + + L +NV DI FP HG+ GEDG Q + E NV
Sbjct: 64 TDLDKKLESFNIDFNKSSGKIVKQSGFLKSNVIFDIAFPAFHGQNGEDGTFQGLCEMLNV 123
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + DK + +P+ +NE + + ++ +
Sbjct: 124 PYVGCDVTSSALTMDKVLTKMIYRAN---NIPTVDFIHFNLNEWRVDKKNIIQQIKSLNW 180
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V++KP R GSSIG++ A L+ + L D++V+VE +E + T V +G
Sbjct: 181 PVIIKPARLGSSIGISKAKNQ-KELEFGIEVALH-YDEKVIVEKAIENLMDVTCCV--IG 236
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---------TQQVAYHTPPR 361
+ D P +L + E F F+Y KYL TQ + P R
Sbjct: 237 NN-DPIPSLLQESVFESGF------------FSYEEKYLKGGGAQTGNATQNII--IPAR 281
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARID 390
I++ A ++ +G AR+D
Sbjct: 282 LDKKTTYEIQDAAIKAYKVIGCSGIARVD 310
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 128/326 (39%), Gaps = 79/326 (24%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--NHLADLGVLTIN 696
F A HG GEDGT Q L E VPY G V +S MDKV T + N++ + + N
Sbjct: 101 FPAFHGQNGEDGTFQGLCEMLNVPYVGCDVTSSALTMDKVLTKMIYRANNIPTVDFIHFN 160
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTL----CVKPARDGCSTGVARLCCAEDLTVYV 752
+ R + K I+ Q K+L +KPAR G S G+++ ++L
Sbjct: 161 LNEWRVD---KKNIIQ---------QIKSLNWPVIIKPARLGSSIGISKAKNQKELEF-- 206
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
IE+ E +I E +E LM
Sbjct: 207 --------------------GIEVALHYDEKVIVEKAIEN----------------LM-- 228
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
++T VIG + SL+ +V ESG S EEK+ G G +I+
Sbjct: 229 ------DVTCCVIGNNDPIPSLLQE-SVFESG-FFSYEEKYLKGGGAQTGNATQNIIIPA 280
Query: 873 ALDKCKQRIELIANALQ------LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926
LDK K E+ A++ G +R+D + + + E+NT+PG ++
Sbjct: 281 RLDK-KTTYEIQDAAIKAYKVIGCSGIARVDFLYDKKAMKWFVNEINTLPGT------LY 333
Query: 927 QALSEQPPMYPHQFFRKVLDLGSERF 952
L ++ + + K++ E++
Sbjct: 334 HHLWKKSGIPFEKLLEKLIGFAEEKY 359
>gi|387790976|ref|YP_006256041.1| D-alanine--D-alanine ligase [Solitalea canadensis DSM 3403]
gi|379653809|gb|AFD06865.1| D-alanine--D-alanine ligase [Solitalea canadensis DSM 3403]
Length = 327
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 154/385 (40%), Gaps = 73/385 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ L+ GG S E +SL SA + I D V I R+ +Y +S +V DF
Sbjct: 5 IALLAGGYSGESVVSLKSAAQIEKSIPADKYTVYKIIITRDSWSYTDASGKVNEIDRNDF 64
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
LE+ F D VF IHG GEDG +Q E +P+ S
Sbjct: 65 SLNLENQKVKF--------------DCVFIAIHGTPGEDGMLQGYFEMLGIPYTTCDSFT 110
Query: 200 CRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
F+K + ++ G S L +G V E+E+ L + V VKP
Sbjct: 111 SALTFNKSYTNCVIAAAGVNVAKSMPLFEGQPVTEAEI--------LAKLTLPVFVKPNN 162
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGI------DDRVVVELFLEGGSEFTAIVLDVGSG 312
GSS+G S K G + E I D +V+VE F++ G EFT V+
Sbjct: 163 GGSSLGT--------SKVKEAGELKEAIERAFKEDKQVLVEEFIK-GREFTCGVVKRN-- 211
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINSI 370
+ V +LP +++ F++ KY P T+++ TP ++ ++
Sbjct: 212 ---NEVTVLPV---------TEIKSSKEFFDFEAKYTPGLTEEI---TPADIDPELLKTV 256
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+ L RID +FL T+ F F ++N + G +T
Sbjct: 257 HLNLKRSYLALNCRGVVRID-FFLQEGTNKF---------------YFLEVNTVPGQTET 300
Query: 431 SFLFQQASKVGFSHSNILRTIIGHA 455
S + QQ + +G++ S+ ++I A
Sbjct: 301 SLIPQQVAAMGWNISDFYSSLIEEA 325
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 118/300 (39%), Gaps = 67/300 (22%)
Query: 633 ENQAT----VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
ENQ VFIA+HG GEDG LQ E G+PYT S +K T+ + A
Sbjct: 69 ENQKVKFDCVFIAIHGTPGEDGMLQGYFEMLGIPYTTCDSFTSALTFNKSYTNCVI---A 125
Query: 689 DLGVLTINKDVRRKEDLLK-TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
GV +V + L + P+ + E+ +KL VKP G S G +++ A +
Sbjct: 126 AAGV-----NVAKSMPLFEGQPVTE--AEILAKLTLPVF-VKPNNGGSSLGTSKVKEAGE 177
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
L +A+E F E ++L
Sbjct: 178 LK---EAIERA------------------------------FKEDKQVLVEE-------- 196
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
KG E T GV+ + + +++P +K S + E K+ G +TP +
Sbjct: 197 --FIKGR----EFTCGVVKRNNEV-TVLPVTEIKSSKEFFDFEAKYTPGLTEEITP---A 246
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
+ E L ++ AL G RID F+ + +EVNTVPG T ++++ Q
Sbjct: 247 DIDPELLKTVHLNLKRSYLALNCRGVVRIDFFLQEGTNKFYFLEVNTVPGQTETSLIPQQ 306
>gi|302339386|ref|YP_003804592.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293]
gi|301636571|gb|ADK81998.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293]
Length = 363
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 161/388 (41%), Gaps = 47/388 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++V L+ GG S E +SL SA SV HI + V +D++ A+ + +Y
Sbjct: 4 IKVALLFGGKSGEHEVSLVSAASVFKHIDKERFDVALIAVDKD-GAWFLQPQPLYDEKEG 62
Query: 138 DF--DFKLES--LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
F + K E+ A G L A+ L ++++VFP +HG FGEDG +Q +LE ++P+
Sbjct: 63 GFVVERKEENRVYAVPAGGLRTMAKPL--DIELVFPVLHGTFGEDGTVQGLLELCDLPYA 120
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G G DK + G VP L+ S+ + V +D S +
Sbjct: 121 GAGVLGSSLCMDKAAVKRIWIQAGLPVVPFEELREVSWKRSKGAAASVRRAVDRFSFPLF 180
Query: 254 VKPTRAGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
VKP+RAGSS+GV+ G+ +++ A DD++++E ++ E V+
Sbjct: 181 VKPSRAGSSVGVSRCETEEGLYAAIEDAF-----SFDDKLLIEPAVQ-AKEIECSVIGNQ 234
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
P ++P+ ++Y KY+ P +
Sbjct: 235 ELTTFAPGEIVPSH---------------DFYDYDAKYIDPDGANLLIPSSLNEEQQKMV 279
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R+ ++ ++ FAR+D ++ ++ G +L +IN I G +
Sbjct: 280 RQISARAYRVAEAEGFARVDCFYEEAT----------------GKVLLNEINTIPGFTKI 323
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G ++ +L ++ A R
Sbjct: 324 SMFPKLCENGGVAYGELLTKLLDLAVDR 351
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 129/327 (39%), Gaps = 82/327 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-------LALNHLADL 690
VF +HG GEDGT+Q LLE +PY G GV+ S CMDK A L + +L
Sbjct: 94 VFPVLHGTFGEDGTVQGLLELCDLPYAGAGVLGSSLCMDKAAVKRIWIQAGLPVVPFEEL 153
Query: 691 GVLTINK------DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
++ + VRR D P L VKP+R G S GV+R C
Sbjct: 154 REVSWKRSKGAAASVRRAVDRFSFP----------------LFVKPSRAGSSVGVSR--C 195
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
+ +Y A+E+ SF + L+ EP V+ EI S
Sbjct: 196 ETEEGLYA-AIEDAF------SFD-------------DKLLIEPAVQAKEIECS------ 229
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
VIG + + P V S D + K+ G NL P
Sbjct: 230 -------------------VIGN-QELTTFAPGEIVP-SHDFYDYDAKYIDPDGANLLIP 268
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
S ++ E +Q + EGF+R+D F G+VL+ E+NT+PG T +
Sbjct: 269 --SSLNEEQQKMVRQISARAYRVAEAEGFARVDCFYEEATGKVLLNEINTIPGFT--KIS 324
Query: 925 IHQALSEQPPMYPHQFFRKVLDLGSER 951
+ L E + + K+LDL +R
Sbjct: 325 MFPKLCENGGVAYGELLTKLLDLAVDR 351
>gi|418090025|ref|ZP_12727179.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA43265]
gi|353761216|gb|EHD41788.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA43265]
Length = 347
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 164/387 (42%), Gaps = 63/387 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMSAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQED- 62
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + A + +VFP +HG GEDG +Q LE +P+VG +
Sbjct: 63 RLMTNATIDWDKKVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSS 122
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V ++++ V KL + V KP+ G
Sbjct: 123 LAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPSNMG 176
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L++A + D RV+VE G +
Sbjct: 177 SSVGISKSENQ-EELRQALELAFR-YDSRVLVE-----------------QGVNAR---- 213
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ +R+
Sbjct: 214 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAVMRQ 269
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 270 NAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 312
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+ +++ ++ A F
Sbjct: 313 YPLLWDNMGISYPDLIERLVDLAKESF 339
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 126/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F D + Q N
Sbjct: 192 QALE---------------------------LAF----RYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
>gi|417792723|ref|ZP_12440047.1| D-alanine--D-alanine ligase [Cronobacter sakazakii E899]
gi|449309511|ref|YP_007441867.1| D-alanine--D-alanine ligase [Cronobacter sakazakii SP291]
gi|333953215|gb|EGL71193.1| D-alanine--D-alanine ligase [Cronobacter sakazakii E899]
gi|449099544|gb|AGE87578.1| D-alanine--D-alanine ligase [Cronobacter sakazakii SP291]
Length = 306
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 137/330 (41%), Gaps = 87/330 (26%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 743
L V RR DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERR----------DIRGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 804 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 861 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAEREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 918 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 947
MT +++ A Q M Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILEL 304
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 153/374 (40%), Gaps = 75/374 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SL S +VL ++ + ++AYA+ V T +
Sbjct: 4 KIAVLLGGHSAERDVSLQSGSAVLAGLK-----------EAGVDAYAVDPRDVCVTTLKE 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+GF D VF +HGR GEDG +Q +LE +P+ G+G
Sbjct: 53 ---------EGF--------------DKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVM 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK L G P L+ ++ LS ++ ++ V+VKP+R
Sbjct: 90 ASAITMDKLRTKLLWQGAGLPVAPWVALERRDIR-GGLSE-ALSARIAALGLPVIVKPSR 147
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ ++L A + E D V+VE +L G EFT +L G + P
Sbjct: 148 EGSSVGMSKVDSA-EALLPALELAFEH-DSEVLVEKWLS-GPEFTVAIL----GDEILP- 199
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
S+ ++ ++Y KYL + + Y P I++ RE A
Sbjct: 200 -------------SIRIQPAGVFYDYEAKYL-SDETQYFCPAG-----IDAEREQA---L 237
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
Q L + D R+ G V S+ G ++N GM S + A
Sbjct: 238 QAL-VMDAWRVLGCRGWGRVDVMQDSD--------GEFYLLEVNTAPGMTSHSLVPMAAR 288
Query: 439 KVGFSHSNILRTII 452
+ G S S ++ I+
Sbjct: 289 QAGMSFSQLVVRIL 302
>gi|125623230|ref|YP_001031713.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853559|ref|YP_006355803.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
NZ9000]
gi|166198487|sp|A2RI72.1|DDL_LACLM RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|124492038|emb|CAL96965.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300069981|gb|ADJ59381.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 349
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 165/382 (43%), Gaps = 52/382 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + +V+ Y+I + Q +++ PA+ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGE---FIKTQEFTDRPAEEEK 64
Query: 142 KL-ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
L LA+ + +S A + +VFP +HG GEDG IQ LE + +VG +
Sbjct: 65 LLTNDLAESYPKISPAA--IYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSA 122
Query: 201 RQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
DK A G VP ++ ++ N+ E++ V KLD V VKP G
Sbjct: 123 SSTMDKLLAKHVFEAVGVPQVP-YVAAFADENQVEIAQE-VVEKLD---FPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
SS+G++ +D L + + E D+RVV+E ++ E VL G+ D
Sbjct: 178 SSVGIS----KVDDLADLQPALSEAYKYDNRVVIEQGVD-AREIECAVL--GNNSDVSAT 230
Query: 319 VLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
LP EV KD ++Y KY+ ++ P + + I+E A
Sbjct: 231 --LPGEV-----------VKDVGFYDYNSKYI-DNKIQMDIPAKVSADLAQKIQEYAKKA 276
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
++ + +R D +F+ T+ G + ++N I G Q S
Sbjct: 277 YKAVNGAGLSRCD-FFV----------------TKDGNVYLNEVNAIPGFTQWSMYPLLW 319
Query: 438 SKVGFSHSNILRTIIGHACSRF 459
+G S+S+++ ++ A F
Sbjct: 320 ENMGLSYSDLIEKLVDLAKETF 341
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 125/320 (39%), Gaps = 62/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE + Y GP ++++ + MDK+ LA + +GV
Sbjct: 84 EKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMDKL---LAKHVFEAVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
V V+I E+ KL VKPA G S G++++ +DL
Sbjct: 141 ----PQVPYVAAFADENQVEIAQEVVEKLDFPVF-VKPANMGSSVGISKV---DDLADLQ 192
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
AL E K +R++ +
Sbjct: 193 PALSEAY--------------------------------------------KYDNRVVIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI V+G + + +P VK+ G K+ I + P + +S +
Sbjct: 209 QGVDAREIECAVLGNNSDVSATLPGEVVKDVG-FYDYNSKYIDNK-IQMDIP--AKVSAD 264
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
K ++ + A+ G SR D FV D G V + EVN +PG T + ++ L E
Sbjct: 265 LAQKIQEYAKKAYKAVNGAGLSRCDFFVTKD-GNVYLNEVNAIPGFTQWS--MYPLLWEN 321
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ K++DL E F
Sbjct: 322 MGLSYSDLIEKLVDLAKETF 341
>gi|307127881|ref|YP_003879912.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B]
gi|418133121|ref|ZP_12769992.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA11304]
gi|418153410|ref|ZP_12790148.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA16121]
gi|6634574|emb|CAB64471.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
gi|306484943|gb|ADM91812.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B]
gi|353805004|gb|EHD85282.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA11304]
gi|353816961|gb|EHD97169.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA16121]
Length = 347
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKVAPSAIYEEEA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESTGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEEAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---TGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|455788759|gb|EMF40723.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Lora str. TE 1992]
Length = 351
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 146/343 (42%), Gaps = 67/343 (19%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 733
DK A+ L + V ++ K +D + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLDSTDAVITKLETLGFPQFLKPVEG 181
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 850
++F S S ++M + +E++ GV+ + G + +P + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPVTEIVPGGEFFDFE 254
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 154/383 (40%), Gaps = 52/383 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-----LNAYAISSAQVYS 133
++ + GG S E IS+ + + + V+ + ++ + Y +S S
Sbjct: 3 KIAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVS 62
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N+P D E + +G +S + + + DIVF +HG GEDG IQ LE +P+
Sbjct: 63 NSP---DLFQEEFQKRYG-VSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYT 118
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G+G A A DK A+ + G P F + E +S + V KL+
Sbjct: 119 GSGVLASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLDSTDA---VITKLETLGFPQF 175
Query: 254 VKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+KP GSS+ V Y + + LK+ +I E D +V+ + FL G E + VL+
Sbjct: 176 LKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLT-GIEVSCGVLERYR 230
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH--TPPRFPIVVINS 369
+ L TE + F++ KY +Q H TP R +
Sbjct: 231 DGKFKKIALPVTE----------IVPGGEFFDFESKY---KQGGSHEITPARISEQEMKR 277
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
++E A + LG ++R D + H+ + N + GM +
Sbjct: 278 VQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL------------------ETNTLPGMTE 319
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
TS + QQA G S + +I
Sbjct: 320 TSLIPQQAKAAGISMEEVFSDLI 342
>gi|225850175|ref|YP_002730409.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Persephonella marina EX-H1]
gi|225644851|gb|ACO03037.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Persephonella marina EX-H1]
Length = 303
Score = 84.3 bits (207), Expect = 3e-13, Method: Composition-based stats.
Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 87/377 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L++ L+ GG S+ER IS+ S ++V + ++
Sbjct: 4 LKIALLYGGSSSEREISIKSGKAVENALK-----------------------------KL 34
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
F + + A+G + + ++ N D+ F +HG+ GEDG IQ VLE + + G+
Sbjct: 35 GFQYSVFDPAEGKDFIKKITDY---NPDLAFIALHGKIGEDGTIQGVLEFLGIKYTGSDL 91
Query: 198 RACRQAFDKYDASLEMSKQGFITVPS-FLLQG-SEVNESELSNWFVTNKLDPNSGKVVVK 255
+ DK + +G ITVP + +Q ++N+ L VVVK
Sbjct: 92 KTSAICMDKSLTKDILKAEG-ITVPEGYTIQNLDQINDLRLGY------------PVVVK 138
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P GSSIGV + D L KA G IL+ ID +V++E F++ G E T +L+ G D
Sbjct: 139 PNSEGSSIGVKIVENE-DQLGKAVGEILK-IDSKVIIERFIK-GREITVGILN-GEPLDI 194
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
++++ K+ ++Y KY+ +Q+ Y P + I+ A
Sbjct: 195 -----------------IEIKVKEGFYDYYNKYI-SQETEYICPAEIESSLYRKIQNTAL 236
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
++ LG AR+D F+ + F ++N I G+ S + +
Sbjct: 237 KIYNILGCKGVARVD--FILDKDKPY----------------FLEVNTIPGLTDHSLIPK 278
Query: 436 QASKVGFSHSNILRTII 452
A+ G + +++ II
Sbjct: 279 AAAVKGINFESLILKII 295
Score = 55.5 bits (132), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
K+ N FIA+HG IGEDGT+Q +LE G+ YTG + S CMDK T
Sbjct: 52 KITDYNPDLAFIALHGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLT 103
>gi|183599132|ref|ZP_02960625.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827]
gi|386745448|ref|YP_006218627.1| D-alanine--D-alanine ligase [Providencia stuartii MRSN 2154]
gi|188021357|gb|EDU59397.1| D-ala D-ala ligase N-terminal domain protein [Providencia stuartii
ATCC 25827]
gi|384482141|gb|AFH95936.1| D-alanine--D-alanine ligase [Providencia stuartii MRSN 2154]
Length = 367
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 143/335 (42%), Gaps = 37/335 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNT 135
LRVG+I GG S E +SL SA+++++ + D V I++ + + A +++N
Sbjct: 4 LRVGVIFGGKSTEHEVSLQSAKNIINGLDRDRFDVCLIGINKQGHWHEYDEADFLIHAND 63
Query: 136 PADFDFKL--ESLA-------QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
PA S+A Q F SL E A+ L +D++FP +HG GEDG +Q +L
Sbjct: 64 PARIALSTPKRSIAIIPGKTTQQFISL-EDAQPLP-QIDVIFPIVHGNLGEDGSLQGLLR 121
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
N+PFVG G DK + G P L S+ E+ V +L
Sbjct: 122 MANLPFVGPGVLGSSACMDKDITKRLLRDAGLHVAPFITLTASDRTEANYEA--VVKQL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ +KP GSS+G++ +S KA D +V++E ++G E V
Sbjct: 179 --GLPLFIKPANQGSSVGISKVTN--ESEFKAALDFAFLFDMKVLIESAVKG-REIECAV 233
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
L + P+ E+ L D+ + Y KY+ + P + V
Sbjct: 234 LG-----NEQPLASPCGEIVLH----------DSFYAYHTKYIDENGASVVAPADLDVEV 278
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVF 401
+ IRE A ++ L +R+D FL HV
Sbjct: 279 SDKIREIALQAYRALNCSGMSRVD-VFLTEDNHVI 312
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 97/253 (38%), Gaps = 64/253 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V VIFGG ++E +VSL S N+ + + CL+ +
Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNI---INGLDRDRFDVCLIGIN-----------------K 45
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ W H +E I A +P R A ++ R+ + + G K F +
Sbjct: 46 QGHW---------HEYDEA-DFLIHANDPARIALSTPKRSIAI---IPG-KTTQQFISLE 91
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
A LP +F VHG +GEDG+LQ LL +P+ GPGV+ S
Sbjct: 92 DAQPLPQID--------------VIFPIVHGNLGEDGSLQGLLRMANLPFVGPGVLGSSA 137
Query: 674 CMDKVATSLALN----HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729
CMDK T L H+A LT + +E K L +K
Sbjct: 138 CMDKDITKRLLRDAGLHVAPFITLTASDRTEAN------------YEAVVKQLGLPLFIK 185
Query: 730 PARDGCSTGVARL 742
PA G S G++++
Sbjct: 186 PANQGSSVGISKV 198
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
EI V+G + S + + +S + K+ G ++ P + + E DK +
Sbjct: 228 EIECAVLGNEQPLASPCGEIVLHDS--FYAYHTKYIDENGASVVAP--ADLDVEVSDKIR 283
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPH 938
+ AL G SR+D F+ DN V+I E+NT+PG T + ++ L +Q M
Sbjct: 284 EIALQAYRALNCSGMSRVDVFLTEDN-HVIINEINTLPGFT--NISMYPKLWQQGGMTYQ 340
Query: 939 QFFRKVLDLGSERF 952
++++LG E++
Sbjct: 341 ALISRLIELGIEKY 354
>gi|418976825|ref|ZP_13524670.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK575]
gi|383350824|gb|EID28675.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK575]
Length = 347
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 167/382 (43%), Gaps = 53/382 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+V E G I + + +D
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLV----EQGVNAREIEVGLLGNYDVKS 227
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
LP EV V++ D ++Y KY+ ++ P + V+ +R+ A
Sbjct: 228 T--LPGEV---------VKDVD-FYDYDAKYI-DNKITMDIPAKISDDVVAVMRQNAETA 274
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 275 FRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMYPLLW 317
Query: 438 SKVGFSHSNILRTIIGHACSRF 459
+G S+ +++ ++ A F
Sbjct: 318 DNMGISYPDLIERLVDLAKESF 339
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ D + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDV-DFYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
>gi|220912996|ref|YP_002488305.1| D-alanyl-alanine synthetase A [Arthrobacter chlorophenolicus A6]
gi|254767718|sp|B8HAC4.1|DDL_ARTCA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|219859874|gb|ACL40216.1| D-alanine/D-alanine ligase [Arthrobacter chlorophenolicus A6]
Length = 382
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 164/395 (41%), Gaps = 50/395 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAISSA 129
RV ++ GG S+E +S +A VL I D V I + + ++++
Sbjct: 18 RVAVLFGGRSSEHAVSCVTAAGVLGAINKDKYDVIPIGIAKSGQWVLAGGDTAQWSLAGK 77
Query: 130 QVYSNTPADFDFKLESLAQG----FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
+ P++ L + + +E + L VD+VFP +HG FGEDG IQ +L
Sbjct: 78 ALPEVAPSEQTVTLAEIGGEHQLIVAAPNEVPQELG-TVDVVFPLLHGPFGEDGTIQGLL 136
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
E + +VG G A DK+ + G P + + + + V ++
Sbjct: 137 ELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLHVGPYVAVTDRQWQKDPEA---VRKQV 193
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFT 303
D V VKP RAGSS+G++ +DSL+ I E D ++V+E + G E
Sbjct: 194 DRLGFPVFVKPARAGSSMGIS----KVDSLEGLDAAIEEARRHDLKLVIEAGIV-GREIE 248
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL+ G G D P LP E+ + G +++ KY+ + P P
Sbjct: 249 CAVLE-GRGTDA-PRTSLPGEISVAGGGH-------EFYDFNAKYVEDDAASLSCPADIP 299
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
I +RE A+ F +G +R+D ++ P G ++ +IN
Sbjct: 300 DEAIARVRELAAAAFDAVGAEGLSRVDFFYTPD-----------------GDLIINEINT 342
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S Q +K G ++ ++ +I A +R
Sbjct: 343 MPGFTPKSMYPQMWAKSGLGYAELIDELIHLALNR 377
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 128/320 (40%), Gaps = 86/320 (26%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD----KVATSLALNHLADLGV 692
VF +HG GEDGT+Q LLE Y G GV+AS MD KV A H+
Sbjct: 117 VVFPLLHGPFGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLHVGPYVA 176
Query: 693 LT---INKD---VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
+T KD VR++ D L P+ VKPAR G S G++++ E
Sbjct: 177 VTDRQWQKDPEAVRKQVDRLGFPVF----------------VKPARAGSSMGISKVDSLE 220
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKN 805
L A+EE +R H + L+ E + EI + + +
Sbjct: 221 GLDA---AIEE----------ARRHDL---------KLVIEAGIVGREIECAVLEGRGTD 258
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
A R G EI+V G H + K+ +L+ P
Sbjct: 259 APRTSLPG-----EISV-----AGGGH------------EFYDFNAKYVEDDAASLSCP- 295
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 925
+ + EA+ + ++ +A+ EG SR+D F D G+++I E+NT+PG TP +
Sbjct: 296 -ADIPDEAIARVRELAAAAFDAVGAEGLSRVDFFYTPD-GDLIINEINTMPGFTPKS--- 350
Query: 926 HQALSEQPPMYPHQFFRKVL 945
MYP + + L
Sbjct: 351 ---------MYPQMWAKSGL 361
>gi|376248414|ref|YP_005140358.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae HC04]
gi|376251204|ref|YP_005138085.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae HC03]
gi|376257022|ref|YP_005144913.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae VA01]
gi|372112708|gb|AEX78767.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae HC03]
gi|372114982|gb|AEX81040.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae HC04]
gi|372119539|gb|AEX83273.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae VA01]
Length = 365
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 159/407 (39%), Gaps = 83/407 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ-------------------GDDLLVRCYYID 118
++V +I GG S+E +S SA +++ H+ G+ R +D
Sbjct: 16 IKVAIIYGGRSSEHSVSCVSAGAIMAHLDPQRYEVFPVGITHDGVWTVGESDPSRLKTVD 75
Query: 119 RNLNAYAIS---SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRF 175
R + + S V NT + F+ SL A VD+VFP +HGRF
Sbjct: 76 RVMPEVQFTREVSLSVNPNTAGELRFEDGSLY--------------AKVDVVFPVLHGRF 121
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
GEDG IQ + E VP+VGTG + DK M+ +G +L+GSE E
Sbjct: 122 GEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEE 181
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVEL 294
V VKP R GSSIG++ V D S A + D +V+VE
Sbjct: 182 HKREL--------GLPVFVKPARGGSSIGISR---VADWSEWDAALSLAREHDSKVIVE- 229
Query: 295 FLEGGSEFTAIVLDVG--SGFDCHPVVLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPT 351
+E + ++ G D V +P +++ D E D + + KYL
Sbjct: 230 -----AEIVGVEVECGVLERIDGSLVASVPAQLQ-------DTDEGDEGFYGFDTKYL-D 276
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
V H P F I+E + F L AR+D +F+ T
Sbjct: 277 DVVTAHIPAPFDAETTALIQELSLKAFTALSCRGLARVD-FFI----------------T 319
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G +L +IN + G S Q G ++ +L +I A +
Sbjct: 320 DHGPVL-NEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQALHK 365
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 124/310 (40%), Gaps = 85/310 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q L E GVPY G GV++S MDK T L L + K
Sbjct: 113 VFPVLHGRFGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFT----KKLMAAEGLPVGK 168
Query: 698 DV--RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+V R E L + E +L VKPAR G S G++R+ D + + AL
Sbjct: 169 EVILRGSETLTE--------EHKRELGLPVF-VKPARGGSSIGISRVA---DWSEWDAAL 216
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
S +R H +++ +
Sbjct: 217 ----------SLAREHD----------------------------------SKVIVEAEI 232
Query: 816 RWVEITVGVIGKC-GSMHSLMPS-VTVKESGD--ILSLEEKFQGGTGINLTPPPASIMST 871
VE+ GV+ + GS+ + +P+ + + GD + K+ P P +T
Sbjct: 233 VGVEVECGVLERIDGSLVASVPAQLQDTDEGDEGFYGFDTKYLDDVVTAHIPAPFDAETT 292
Query: 872 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
+ Q + L A AL G +R+D F+ D+G VL E+NT+PG TP +
Sbjct: 293 ALI----QELSLKAFTALSCRGLARVDFFIT-DHGPVL-NEINTMPGFTPIS-------- 338
Query: 931 EQPPMYPHQF 940
MYP F
Sbjct: 339 ----MYPQVF 344
>gi|398803225|ref|ZP_10562331.1| D-alanine--D-alanine ligase [Polaromonas sp. CF318]
gi|398097104|gb|EJL87416.1| D-alanine--D-alanine ligase [Polaromonas sp. CF318]
Length = 325
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 152/374 (40%), Gaps = 83/374 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S VL ++ R ++A+A PA+
Sbjct: 10 KVAVLMGGQSAEREVSLMSGSGVLKALR-----------SRGVDAHAFD--------PAE 50
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D LSE + + F +HGRFGEDG +Q LE +P+ G+G
Sbjct: 51 RD------------LSELKKD---GFERCFIALHGRFGEDGTVQGALELLGIPYTGSGVM 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK M +G T LL+ ++++ V + L ++VKP R
Sbjct: 96 ASSMAIDKVMTKRVMISEGLPTPQYRLLRRGAYGAADIAA--VPDALGL---PLIVKPAR 150
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT G+ +++ +A E +D V+ E F+ G E T VL G+G
Sbjct: 151 EGSSIGLTKVTSRDGMAEAVAQA-----EKLDADVLCEQFIS-GDEVTCPVLGTGAGAHA 204
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + D ++Y+ KY T Y P P EG
Sbjct: 205 LPV--------------IRIVAPDGNYDYQNKYF-TDTTQYLVPCGLP--------EGEE 241
Query: 376 LLFQRLGLCDFARID--GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
+ Q+L L F ++ GW + + ++ Y +IN GM S +
Sbjct: 242 AVIQQLVLDAFRILNCRGWAR-ADVMIDKATRKPY---------LLEINTSPGMTGHSLV 291
Query: 434 FQQASKVGFSHSNI 447
A G S+ ++
Sbjct: 292 PMSARAAGISYEDL 305
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 113/292 (38%), Gaps = 61/292 (20%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L K+ FIA+HG GEDGT+Q LE G+PYTG GVMAS +DKV T +
Sbjct: 55 ELKKDGFERCFIALHGRFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRV---MI 111
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
G+ T + R+ I + L L VKPAR+G S G+ ++ + +
Sbjct: 112 SEGLPTPQYRLLRRGAYGAADIAAVPDALG-----LPLIVKPAREGSSIGLTKVTSRDGM 166
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
V E+ + + E F+ D
Sbjct: 167 AEAVAQAEKLDADV----------------------LCEQFISGD--------------- 189
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
E+T V+G H+L P + + + K+ T L P
Sbjct: 190 ----------EVTCPVLGTGAGAHAL-PVIRIVAPDGNYDYQNKYFTDTTQYLVP----C 234
Query: 869 MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
E + Q++ L A L G++R D ++ + ++E+NT PGMT
Sbjct: 235 GLPEGEEAVIQQLVLDAFRILNCRGWARADVMIDKATRKPYLLEINTSPGMT 286
>gi|383812778|ref|ZP_09968205.1| D-alanine--D-alanine ligase [Serratia sp. M24T3]
gi|383298188|gb|EIC86495.1| D-alanine--D-alanine ligase [Serratia sp. M24T3]
Length = 309
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 139/329 (42%), Gaps = 83/329 (25%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L E VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK T L L
Sbjct: 52 RLKDEGYGKVFIALHGRGGEDGTLQGVLEHLDLPYTGSGVMASALTMDKFRTKLVWEALG 111
Query: 689 DLGVLTINKDVR-RKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
L ++ V K+DL + ++T+ L VKP+R+G S G++++ E+
Sbjct: 112 ----LPVSPFVALNKKDLAAAGQGALSEKITA--LGLPLIVKPSREGSSVGMSKVNAPEE 165
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
L + ALEE F+ D++L
Sbjct: 166 L---LPALEEA------------------------------FLHDDDLLI---------- 182
Query: 808 RLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
+W+ E TV ++G +MPS+ ++ +G + K+ P
Sbjct: 183 -------EKWLSGPEYTVAIVGD-----QVMPSIRIQPAGIFYDYQAKYISDETQYFCP- 229
Query: 865 PASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGEVLIIEVNTVPGM 918
LD +Q EL ALQ G+ R+D + + G ++EVNT PGM
Sbjct: 230 -------SGLD-AQQEQELADLALQAYRALDCSGWGRVDVMQDSE-GNFNLLEVNTSPGM 280
Query: 919 TPSTVLIHQALSEQPPMYPHQFFRKVLDL 947
T S L+ A + +P Q ++L+L
Sbjct: 281 T-SHSLVPMAAKQAGLSFP-QLVARILEL 307
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/374 (22%), Positives = 145/374 (38%), Gaps = 75/374 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S +VL ++ + ++A+A+ + D
Sbjct: 7 KVAVLFGGSSAEREVSLQSGAAVLAGLR-----------ESGIDAHALDTKTFAVTRLKD 55
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+G+G VF +HGR GEDG +Q VLE ++P+ G+G
Sbjct: 56 ---------EGYGK--------------VFIALHGRGGEDGTLQGVLEHLDLPYTGSGVM 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK+ L G P L ++ + ++ K+ ++VKP+R
Sbjct: 93 ASALTMDKFRTKLVWEALGLPVSPFVALNKKDLAAA--GQGALSEKITALGLPLIVKPSR 150
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ + L + L DD +++E +L G AIV D
Sbjct: 151 EGSSVGMSKVNAPEELLPALEEAFLH--DDDLLIEKWLSGPEYTVAIVGD---------- 198
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
Q S+ ++ ++Y+ KY+ + + Y P + + A +
Sbjct: 199 ---------QVMPSIRIQPAGIFYDYQAKYI-SDETQYFCPSGLDAQQEQELADLALQAY 248
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ L + R+D V SE G ++N GM S + A
Sbjct: 249 RALDCSGWGRVD---------VMQDSE--------GNFNLLEVNTSPGMTSHSLVPMAAK 291
Query: 439 KVGFSHSNILRTII 452
+ G S ++ I+
Sbjct: 292 QAGLSFPQLVARIL 305
>gi|146310511|ref|YP_001175585.1| D-alanyl-alanine synthetase A [Enterobacter sp. 638]
gi|145317387|gb|ABP59534.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
Length = 366
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 160/395 (40%), Gaps = 61/395 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT--P 136
RVG++ GG SAE +SL SA++++D I V ID+ + ++Q N P
Sbjct: 5 RVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLNADDP 64
Query: 137 ADFDFKLESLAQG------FGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
A ++ G L A +D++FP +HG GEDG +Q +L N
Sbjct: 65 AHIALNPSEISVATVPGVIHGQLINAGNAQTLAQIDVIFPIVHGTLGEDGSLQGMLRMAN 124
Query: 190 VPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
+PFVG+ GS AC DK D + + + + + F+ + N + S +T +L
Sbjct: 125 LPFVGSDVLGSAAC---MDK-DVTKRLLRDAGLNIAPFVTL-TRANRDQHSFAQITAQL- 178
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ V + A + L D +VVVE ++ G E
Sbjct: 179 --GLPLFVKPANQGSSVGVS---KVTSEAQFADAVRLAFEFDHKVVVEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C VVL ++Y KY+ + P
Sbjct: 233 VLGNDFPQASTCGEVVL-----------------NSDFYSYDTKYIDDKGAQVVVPAVLD 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ + IR A +Q LG AR+D VF ++E ++ +IN
Sbjct: 276 PEINDKIRAIAIEAYQALGCGGMARVD---------VFLTAEND--------VIINEINT 318
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + G S+ ++ +I A R
Sbjct: 319 LPGFTNISMYPKLWQASGISYPELITRLIELALER 353
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 76/322 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG+LQ +L +P+ G V+ S CMDK T L A L +
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRMANLPFVGSDVLGSAACMDKDVTKRLLRD-AGLNIAPFV 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R D + ++T++L L VKPA G S GV+++
Sbjct: 160 TLTRANRDQHS------FAQITAQLGLP-LFVKPANQGSSVGVSKV-------------- 198
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
T E F+ +A RL ++ + +
Sbjct: 199 -----------------------------------TSEAQFA------DAVRLAFEFDHK 217
Query: 817 WVEITVGVIGK---CGSMHSLMPSVT----VKESGDILSLEEKFQGGTGINLTPPPASIM 869
V + G+ G+ C + + P + V + D S + K+ G + P +++
Sbjct: 218 VV-VEQGIKGREIECAVLGNDFPQASTCGEVVLNSDFYSYDTKYIDDKGAQVVVP--AVL 274
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 929
E DK + AL G +R+D F+ +N +V+I E+NT+PG T + ++ L
Sbjct: 275 DPEINDKIRAIAIEAYQALGCGGMARVDVFLTAEN-DVIINEINTLPGFT--NISMYPKL 331
Query: 930 SEQPPMYPHQFFRKVLDLGSER 951
+ + + ++++L ER
Sbjct: 332 WQASGISYPELITRLIELALER 353
>gi|114330270|ref|YP_746492.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91]
gi|122314679|sp|Q0AJE4.1|DDL_NITEC RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|114307284|gb|ABI58527.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91]
Length = 306
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 160/379 (42%), Gaps = 84/379 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER ISL S +VL +Q ++A+A P +
Sbjct: 8 KVAVLLGGRSAEREISLKSGHAVLAALQ-----------RSQVDAHAFDPV----GQPLE 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ L QGF D F +HGR+GEDG +Q LE ++P+ G+G
Sbjct: 53 -----DLLKQGF--------------DRAFIALHGRYGEDGSVQGALELMDLPYTGSGIL 93
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK+ + G I+ P +++ ++ N E VT++L +++KP R
Sbjct: 94 ASALAMDKWRTKMIWQAAG-ISTPDYVMLDADSNFQE-----VTDRL---GLPLIIKPAR 144
Query: 259 AGSSIGVT-VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GS+IG+ V Y ++ A + D V+ E F++ G E TA +LD D P
Sbjct: 145 EGSTIGLNKVDYA--QDMQSAYQTAAQH-DSLVIAEQFIQ-GIELTAAILD-----DV-P 194
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
+ L+ +DV E +++Y+ KY ++ Y P ++ I+E A
Sbjct: 195 LPLV----------RIDVTE--GLYDYQAKYF-SESTRYTCPSGLSKILTTRIQEQALYA 241
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
+ LG ++R+D L + F F + N GM S + A
Sbjct: 242 HRILGCTGWSRVD-LILDKNGQPF----------------FLEANTSPGMTNHSLVPMAA 284
Query: 438 SKVGFSHSNILRTIIGHAC 456
G S ++ I+ +C
Sbjct: 285 QAAGISFDELVIQILELSC 303
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 20/123 (16%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA- 688
L K+ FIA+HG GEDG++Q LE +PYTG G++AS MDK T +
Sbjct: 54 LLKQGFDRAFIALHGRYGEDGSVQGALELMDLPYTGSGILASALAMDKWRTKMIWQAAGI 113
Query: 689 ---DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745
D +L + + + D L P++ +KPAR+G + G+ ++ A
Sbjct: 114 STPDYVMLDADSNFQEVTDRLGLPLI----------------IKPAREGSTIGLNKVDYA 157
Query: 746 EDL 748
+D+
Sbjct: 158 QDM 160
>gi|375142919|ref|YP_005003568.1| D-alanine--D-alanine ligase [Mycobacterium rhodesiae NBB3]
gi|359823540|gb|AEV76353.1| D-alanine--D-alanine ligase [Mycobacterium rhodesiae NBB3]
Length = 385
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 162/405 (40%), Gaps = 58/405 (14%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DRNLNAYA 125
GR+ RV ++ GG S+E IS SA S++ ++ V I D + A
Sbjct: 21 GRI-RVAVVYGGRSSEHAISCVSAGSIMRNLDPQRFDVVAVGITPGGTWMLTDAEPDTLA 79
Query: 126 ISSAQVYSNTPADFDFKLESLAQGFG----SLSEFAEHLAANVDIVFPTIHGRFGEDGGI 181
I+ Q+ T A ++ G G SLS A + VD+VFP +HG +GEDG I
Sbjct: 80 IADRQLPQVTSASGRELALAVDPGRGGELVSLSAGAGEVLGAVDVVFPVLHGPYGEDGTI 139
Query: 182 QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
Q +LE VP+VG G A DK ++ +G L G +V
Sbjct: 140 QGLLELAGVPYVGAGVLASASGMDKEFTKKLLAAEG-------LPIGDQVVLRPRQQTVS 192
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
+ V VKP+R GSSIGV+ D L A + D +V+VE +
Sbjct: 193 LEDRERLGLPVFVKPSRGGSSIGVSRVTAS-DQLPAAIELARRN-DPKVIVEAAI----- 245
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR----EKDAIFNYRRKYLPTQQVAYH 357
VG +C + VE G + V +D+ +++ KYL
Sbjct: 246 -------VGRELECGVLEFPDGRVEASTVGEIRVAGVRGREDSFYDFATKYL-DDAAELD 297
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P + + + +R+ A FQ + AR+D +FL TE G I+
Sbjct: 298 VPAKIDDTIADEVRQLAIRAFQAIDCQGLARVD-FFL----------------TENGPII 340
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+IN + G S + + G + +L T++ A R L
Sbjct: 341 -NEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALKRGTGL 384
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE GVPY G GV+AS + MDK T LA G L I
Sbjct: 125 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASASGMDKEFTK---KLLAAEG-LPIGD 180
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V +L+ + E +L VKP+R G S GV+R+ ++ L ++
Sbjct: 181 QV-----VLRPRQQTVSLEDRERLGLPVF-VKPSRGGSSIGVSRVTASDQLPAAIE 230
>gi|298243533|ref|ZP_06967340.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
gi|297556587|gb|EFH90451.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
Length = 382
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 165/402 (41%), Gaps = 57/402 (14%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR-------------- 119
G + +R+GLI GG S E +SLNSA+SV+ +I D V I++
Sbjct: 8 GAKKIRIGLIYGGRSGEHEVSLNSAKSVIANINSDKYEVVPIAINKTGKWLLGVEPTRMI 67
Query: 120 NLNAYAISSAQVYSNTPADF--DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGE 177
+ A++ +T F D L L GS + A +D++FP +HG GE
Sbjct: 68 EAEKSTQAEAELEQSTAVTFTGDPNLRRLIPVNGSQEQLENQGA--IDVIFPVMHGTTGE 125
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
DG +Q +L+ +VP+VG G DK + + G + V +L+ N+ E
Sbjct: 126 DGALQGMLDMADVPYVGCGVLGSALGMDKEKMKMIFERAG-LPVGEYLVYRR--NQWERD 182
Query: 238 NWFVTNKLDPN-SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL 296
+ N ++ + VKP GSS+G+ A+ + L A + E D +V++E +
Sbjct: 183 PESILNAIEEQLNYPCFVKPVNLGSSVGINKAHDRAE-LVHAINVAAE-YDRKVIIERNI 240
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
EF VL G D P+V + E + + ++Y+ KY+ +
Sbjct: 241 -NCREFECAVL----GND-EPIVSVMGE----------IVPSNEFYDYKAKYVDGKSQVI 284
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
TP + +R A + F L L +RID +FL T+ +
Sbjct: 285 -TPAEISQELSQEMRRQALIAFTSLDLSGLSRID-FFLEKETN---------------KV 327
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++N + G Q S G + ++ ++ A R
Sbjct: 328 YINEVNTLPGFTQVSMYPMLWEASGIPYPELIDRLVELALER 369
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 126/323 (39%), Gaps = 64/323 (19%)
Query: 633 ENQATV---FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
ENQ + F +HG GEDG LQ +L+ VPY G GV+ S MDK +
Sbjct: 107 ENQGAIDVIFPVMHGTTGEDGALQGMLDMADVPYVGCGVLGSALGMDKEKMKMIFER--- 163
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
G+ V R+ + P I + + +L VKP G S G+
Sbjct: 164 AGLPVGEYLVYRRNQWERDP-ESILNAIEEQLNYPCF-VKPVNLGSSVGI---------- 211
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
++AH + E++ + + ++
Sbjct: 212 ------------------NKAH-------------------DRAELVHAINVAAEYDRKV 234
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
+ + N E V+G + S+M + S + + K+ G +TP S
Sbjct: 235 IIERNINCREFECAVLGNDEPIVSVMGEIV--PSNEFYDYKAKYVDGKSQVITPAEIS-- 290
Query: 870 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+ L + +R LIA +L L G SRID F+ + +V I EVNT+PG T V ++
Sbjct: 291 --QELSQEMRRQALIAFTSLDLSGLSRIDFFLEKETNKVYINEVNTLPGFT--QVSMYPM 346
Query: 929 LSEQPPMYPHQFFRKVLDLGSER 951
L E + + ++++L ER
Sbjct: 347 LWEASGIPYPELIDRLVELALER 369
>gi|426411489|ref|YP_007031588.1| D-alanyl-alanine synthetase A [Pseudomonas sp. UW4]
gi|426269706|gb|AFY21783.1| D-alanyl-alanine synthetase A [Pseudomonas sp. UW4]
Length = 364
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 163/404 (40%), Gaps = 73/404 (18%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R LRVG+I GG SAE +SL SA++++D + ID+ + N
Sbjct: 2 RKLRVGIIFGGRSAEHEVSLQSAKNIVDALDRSRFEPVLIGIDKQ--------GHWHLND 53
Query: 136 PADFDFKLES------------LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGED 178
P++F E+ LA G S+ ++ L +VD++FP +HG GED
Sbjct: 54 PSNFLLNQENPALIALNQSNRELAVVPGKASQQLVETSSQELLGHVDVIFPIVHGTLGED 113
Query: 179 GGIQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
G +Q +L ++PFVG+ GS C DK + + G P L + +
Sbjct: 114 GCLQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFVTLTRASAARTG 170
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVEL 294
+ V ++L + VKP GSS+GV+ V D + + + L D +V++E
Sbjct: 171 FAE--VQSRLGL---PLFVKPANQGSSVGVS---KVTDEAEYSAAVELALSFDTKVLIE- 221
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
+A+ SG + VL E G + VR ++Y KY+
Sbjct: 222 --------SAV-----SGREIECAVLGNEEAIASGCGEIVVR--SGFYSYDSKYIDDTAA 266
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P + IR A FQ LG AR+D + T+ G
Sbjct: 267 EVVVPANISVDASERIRALAVEAFQILGCSGLARVDVFL-----------------TDSG 309
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+L +IN + G + S + G ++S ++ +I A +
Sbjct: 310 EVLINEINSLPGFTRISMYPKLWQATGMTYSELVTRLIELALEK 353
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 112/474 (23%), Positives = 184/474 (38%), Gaps = 142/474 (29%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P +A+ Q+V + L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQELLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 720
S CMDK I+K + R L TP V + + E+ S+
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRASAARTGFAEVQSR 177
Query: 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
L L VKPA G S GV+++ D Y A+E L SF
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKVT---DEAEYSAAVELAL------SFD------------ 215
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
++L S + + EI V+G ++ S + V
Sbjct: 216 ------------TKVLIESAVSGR--------------EIECAVLGNEEAIASGCGEIVV 249
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL---EGFSRID 897
+ S + K+ T + P +S +A ++ + L A Q+ G +R+D
Sbjct: 250 RSG--FYSYDSKYIDDTAAEVVVPAN--ISVDASERIRA---LAVEAFQILGCSGLARVD 302
Query: 898 AFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
F+ D+GEVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 303 VFLT-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVTRLIELALEK 353
>gi|56459549|ref|YP_154830.1| D-alanine--D-alanine ligase [Idiomarina loihiensis L2TR]
gi|81363518|sp|Q5R0N1.1|DDL_IDILO RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|56178559|gb|AAV81281.1| D-alanine-D-alanine ligase B [Idiomarina loihiensis L2TR]
Length = 309
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 150/380 (39%), Gaps = 78/380 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S +VL + + + ++A+A A
Sbjct: 8 KVAVMLGGTSAERDVSLKSGMAVLKGL-----------VAKGIDAHAFDPAA-------- 48
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
SL E E D VF +HGR GEDG +Q L+ +P+ G+
Sbjct: 49 ------------HSLQELVEQ---KFDRVFIALHGRGGEDGSMQGALQILEMPYTGSDVL 93
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
C DK KQ + +V V ++E+ V L G+V+VKP R
Sbjct: 94 GCALGMDKV-----RCKQIWHSVGLPTANWRVVTQAEIEQVNVEAMLQELGGRVIVKPAR 148
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIG+++A SL A E DD ++VE ++E G+E+T +L+ G PV
Sbjct: 149 EGSSIGMSIADNG-RSLALALQHAAE-FDDDLLVEQWVE-GAEYTIGILE-GKAL---PV 201
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+ L T E +++ KY YH P S+R A F
Sbjct: 202 IRLQTPHEF--------------YDFEAKY-QANDTQYHCPAGLSDDDEASLRTLAERAF 246
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+G + RID + + EW + N + GM + S + A
Sbjct: 247 AAIGGSGWGRID--------------VMRNNAGEW---FLLEANTVPGMTEKSLVPMAAK 289
Query: 439 KVGFSHSNILRTIIGHACSR 458
G ++++ I+ R
Sbjct: 290 VAGLQFNDLVERILAQTLER 309
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 124/310 (40%), Gaps = 75/310 (24%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P HS+ E L ++ VFIA+HG GEDG++Q L+ +PYTG V+ MDKV
Sbjct: 46 PAAHSLQE---LVEQKFDRVFIALHGRGGEDGSMQGALQILEMPYTGSDVLGCALGMDKV 102
Query: 679 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 738
+ +G+ T N V + ++ + + + EL + + VKPAR+G S G
Sbjct: 103 RCKQIWH---SVGLPTANWRVVTQAEIEQVNVEAMLQELGGR-----VIVKPAREGSSIG 154
Query: 739 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 798
++ I N S A L + E D+ L
Sbjct: 155 MS---------------------IADNGRSLA-------------LALQHAAEFDDDLLV 180
Query: 799 SQSTNKNADRLMWKGNSRWV---EITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQ 854
Q WV E T+G++ GK +P + ++ + E K+Q
Sbjct: 181 EQ----------------WVEGAEYTIGILEGKA------LPVIRLQTPHEFYDFEAKYQ 218
Query: 855 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 914
P S +L +R A+ G+ RID N + GE ++E NT
Sbjct: 219 ANDTQYHCPAGLSDDDEASLRTLAER---AFAAIGGSGWGRIDVMRN-NAGEWFLLEANT 274
Query: 915 VPGMTPSTVL 924
VPGMT +++
Sbjct: 275 VPGMTEKSLV 284
>gi|167757234|ref|ZP_02429361.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402]
gi|237735682|ref|ZP_04566163.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|374626329|ref|ZP_09698742.1| D-alanine-D-alanine ligase [Coprobacillus sp. 8_2_54BFAA]
gi|167703409|gb|EDS17988.1| D-ala D-ala ligase N-terminal domain protein [Clostridium ramosum
DSM 1402]
gi|229381427|gb|EEO31518.1| conserved hypothetical protein [Coprobacillus sp. D7]
gi|373914186|gb|EHQ46018.1| D-alanine-D-alanine ligase [Coprobacillus sp. 8_2_54BFAA]
Length = 349
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 121/291 (41%), Gaps = 49/291 (16%)
Query: 164 VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223
+D V P +HG+ GEDG +Q ++E +P +G G A DKY A + G S
Sbjct: 96 IDAVLPVLHGKNGEDGTVQGLMELAKIPVLGCGLLASALCMDKYRAHQLVKAAGIKVTRS 155
Query: 224 FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283
L+ N F L+ + VKP +AGSS G++ ++ L KA
Sbjct: 156 VLVHN--------INDFNVKALN---FPLFVKPLKAGSSYGISKVVK-MEELTKALEYAF 203
Query: 284 EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFN 343
D+ V+VE +EG +VG + + + E++ G F+
Sbjct: 204 -NYDNEVIVEEAVEG--------FEVGCAIIGNDELTVGEVDEIELSG--------GFFD 246
Query: 344 YRRKY-LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFS 402
Y KY L T + H P R V I+E A +++Q L +FAR+D + P++
Sbjct: 247 YDEKYTLKTSTI--HMPARIDEVTARKIQETAKIIYQTLACQNFARVDMFLTPNN----- 299
Query: 403 SSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIG 453
I+F ++N I G S Q VGF S ++ I+
Sbjct: 300 ------------EIVFNEVNTIPGFTDHSRFPQMMKGVGFEFSELIDKIVA 338
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 127/303 (41%), Gaps = 69/303 (22%)
Query: 619 PMRHSINEWI--KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 676
P R ++ E + K+ + V +HG GEDGT+Q L+E +P G G++AS CMD
Sbjct: 78 PERQAVMEIVDNKIIYQQIDAVLPVLHGKNGEDGTVQGLMELAKIPVLGCGLLASALCMD 137
Query: 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 736
K + L + + + V +V ++ K L VKP + G S
Sbjct: 138 KYRA----HQLVKAAGIKVTRSV----------LVHNINDFNVKALNFPLFVKPLKAGSS 183
Query: 737 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 796
G++++ E+LT KALE N E+++ E VE E+
Sbjct: 184 YGISKVVKMEELT---KALEYAF------------------NYDNEVIV-EEAVEGFEV- 220
Query: 797 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 856
GN E+TVG + + ++ SG +EK+
Sbjct: 221 -----------GCAIIGND---ELTVGEVDE------------IELSGGFFDYDEKYTLK 254
Query: 857 TGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 916
T + PA I A K ++ ++I L + F+R+D F+ +N E++ EVNT+P
Sbjct: 255 T--STIHMPARIDEVTA-RKIQETAKIIYQTLACQNFARVDMFLTPNN-EIVFNEVNTIP 310
Query: 917 GMT 919
G T
Sbjct: 311 GFT 313
>gi|116493050|ref|YP_804785.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745]
gi|421894513|ref|ZP_16325001.1| D-alanine-D-alanine ligase family protein [Pediococcus pentosaceus
IE-3]
gi|122265486|sp|Q03EM9.1|DDL_PEDPA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|116103200|gb|ABJ68343.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745]
gi|385272603|emb|CCG90373.1| D-alanine-D-alanine ligase family protein [Pediococcus pentosaceus
IE-3]
Length = 351
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 164/397 (41%), Gaps = 80/397 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHI--QGDDLLVRCYYIDRNLNAYAISSAQVY--- 132
+++ ++ GG S ER +SL+S + + + +G D + ++ Y + Q Y
Sbjct: 1 MKIAVLAGGKSTERNVSLSSGSKITNALRSKGYDATMIDLFL-----GYELEDGQSYEDV 55
Query: 133 ---SNTPADFDF--------KLESLAQGFGSLSEFAEH---LAANVDIVFPTIHGRFGED 178
SNT D++ +E L G++ F ++ + D VF +HG GE+
Sbjct: 56 FKSSNTSTDYEISDAVLTEEDIEELRTD-GTVGLFGKNVLPILQAADFVFLALHGGDGEN 114
Query: 179 GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238
G +Q VL+ ++ + G+GS A A DK + M T +L + +L+
Sbjct: 115 GKVQAVLDLNHIKYTGSGSLASGIAMDKAISKEIMLYNNIKTAQFAVLHAKDGIHPQLAF 174
Query: 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELF 295
+ +VVKP GSSIG + + + +SLK A DD ++VE F
Sbjct: 175 DY----------PMVVKPNSGGSSIGTRIVHDEAELAESLKDAY-----RFDDEIIVEEF 219
Query: 296 LEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA 355
+ G EF+ V V Q ++++ D ++Y K+
Sbjct: 220 IT-GREFSLGV------------------VNGQAMPAIEIVVNDGWYDYEHKFQTGSTTK 260
Query: 356 YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGT 415
+ TPP V + ++ A LG+ ++ R+D FL + T V+
Sbjct: 261 FVTPPEIEDDVHDEMKRVAVQTMDALGMTNYGRVD--FLTNDTGVY-------------- 304
Query: 416 ILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
+ N + GM S L Q+A G S+ ++ +I+
Sbjct: 305 --VIEANNLPGMTPLSLLPQEAEAAGISYEDLCESIV 339
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 119/297 (40%), Gaps = 81/297 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF+A+HGG GE+G +Q++L+ + YTG G +AS MDK I+K
Sbjct: 103 VFLALHGGDGENGKVQAVLDLNHIKYTGSGSLASGIAMDK----------------AISK 146
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
++ L + ++ V A+DG +A D + VK
Sbjct: 147 EIM----------------LYNNIKTAQFAVLHAKDGIHPQLAF-----DYPMVVK---- 181
Query: 758 CLLRIPPNSFSRA------HGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811
PNS + H E+ + F+ DEI+ T +
Sbjct: 182 ------PNSGGSSIGTRIVHDEAELAESLKDAYRFD-----DEIIVEEFITGR------- 223
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
E ++GV+ MP++ + + E KFQ G+ PP +
Sbjct: 224 -------EFSLGVVNG-----QAMPAIEIVVNDGWYDYEHKFQTGSTTKFVTPPE--IED 269
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+ D+ K+ +AL + + R+D F+ D G V +IE N +PGMTP ++L +A
Sbjct: 270 DVHDEMKRVAVQTMDALGMTNYGRVD-FLTNDTG-VYVIEANNLPGMTPLSLLPQEA 324
>gi|417775531|ref|ZP_12423384.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans str. 2002000621]
gi|418700911|ref|ZP_13261849.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Bataviae str. L1111]
gi|421125376|ref|ZP_15585629.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410437283|gb|EKP86386.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410574856|gb|EKQ37885.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans str. 2002000621]
gi|410760006|gb|EKR26206.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 320
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 39 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 98
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 733
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 99 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 150
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S V ++ E L E
Sbjct: 151 GSSVSVYKITNREQLK-----------------------------------------EKL 169
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 850
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 170 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 223
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 224 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 278
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 279 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 319
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 137/341 (40%), Gaps = 51/341 (14%)
Query: 124 YAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
Y +S SN+P D E + +G +S + + + DIVF +HG GEDG IQ
Sbjct: 22 YRMSIPFEVSNSP---DLFQEEFQKRYG-VSRTNQIFSLDADIVFLGLHGGQGEDGTIQG 77
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW--FV 241
LE +P+ G+G A A DK A+ + G P F E+++ E N V
Sbjct: 78 FLEILGIPYTGSGVLASAIAMDKTRANQIFLQSGQKVAPFF-----EIDKLEYLNSTDAV 132
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEGG 299
KL+ +KP GSS+ V Y + + LK+ +I E D +V+ + FL G
Sbjct: 133 ITKLETLGFPQFLKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLT-G 187
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH-- 357
E + VL+ + L TE + F++ KY +Q H
Sbjct: 188 IEVSCGVLERYRDGKFKKIALPATE----------IVPGGEFFDFESKY---KQGGSHEI 234
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
TP R + ++E A + LG ++R D + H+
Sbjct: 235 TPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL---------------- 278
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ N + GM +TS + QQA G S + +I R
Sbjct: 279 --ETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIEIGLKR 317
>gi|421076634|ref|ZP_15537616.1| D-alanine--D-alanine ligase [Pelosinus fermentans JBW45]
gi|392525246|gb|EIW48390.1| D-alanine--D-alanine ligase [Pelosinus fermentans JBW45]
Length = 364
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 163/393 (41%), Gaps = 55/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
+ V L+ GG S E +SL SA++++ I + + ID+ + N +
Sbjct: 4 INVALLFGGNSTEHEVSLQSAKNIIHAINKEKYELTLIGIDKRGQWFLCDQEDFLINEDS 63
Query: 136 PADFDFKLESLAQGF--GSLSE----FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
P D K + +A F G SE FAE ++D+VFP +HG +GEDG +Q +L
Sbjct: 64 PKDIMLKHKGVAVAFQMGKDSEQLICFAEKTFTKSIDVVFPILHGTYGEDGTVQGLLTLA 123
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+PFVG DK A + G S Q E + ++ V +L
Sbjct: 124 NIPFVGPSPLGSGIGMDKDVAKRLLRDAGIPVAKSLTYQQWE--QPGINFEAVVEQL--- 178
Query: 249 SGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
V VKP GSS+G++ + ++K+A D ++++E +EG
Sbjct: 179 GLPVFVKPASLGSSVGISKVKQQDELFAAIKEAF-----AFDHKIIIEECIEGQE----- 228
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
+C +L E+ + + +++ ++Y KY+ Q A P P
Sbjct: 229 -------IEC---AILGNEIPIASAVGAIIPQQE-FYSYAAKYIDDQGAAIQIPADIPKE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ ++E A FQ L AR+D +FL T+ +L +IN I
Sbjct: 278 IAALVQELAIKSFQVLCCEGMARVD-FFL----------------TKEHNVLINEINTIP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G S+++++ +I A R
Sbjct: 321 GFTKISMYPKLWGISGISYTDLIDRLIQLALDR 353
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 114/286 (39%), Gaps = 66/286 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LL +P+ GP + S MDK +A L D G+ +
Sbjct: 101 VVFPILHGTYGEDGTVQGLLTLANIPFVGPSPLGSGIGMDK---DVAKRLLRDAGI-PVA 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
K + ++ + P ++ + + +L VKPA G S G++++ ++L +K
Sbjct: 157 KSLTYQQ--WEQPGIN-FEAVVEQLGLPVF-VKPASLGSSVGISKVKQQDELFAAIK--- 209
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+F+ H +I E +E EI GN
Sbjct: 210 --------EAFAFDHK-----------IIIEECIEGQEI------------ECAILGNEI 238
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
+ VG I +P + S K+ G + P AL +
Sbjct: 239 PIASAVGAI---------IP------QQEFYSYAAKYIDDQGAAIQIPADIPKEIAALVQ 283
Query: 877 CKQRIELIANALQL---EGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
EL + Q+ EG +R+D F+ ++ VLI E+NT+PG T
Sbjct: 284 -----ELAIKSFQVLCCEGMARVDFFLTKEHN-VLINEINTIPGFT 323
>gi|28871324|ref|NP_793943.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|422657078|ref|ZP_16719521.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|39931110|sp|Q87XJ6.1|DDLA_PSESM RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|28854575|gb|AAO57638.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|331015641|gb|EGH95697.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 363
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 159/389 (40%), Gaps = 53/389 (13%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S+E +SL SAR+V++ I + + +D+ A N
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64
Query: 140 DFKLESLAQGFGSL-----SEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
KL + L +F E + A +D+VFP IHG FGEDG +Q +L V
Sbjct: 65 RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE-LSNWFVTNKLDPNS 249
PFVG A DK D + + + I V F++ +N E LS +L S
Sbjct: 125 PFVGADVLASAACMDK-DVTKRLLRDAGIAVAPFMV----LNRGESLSFAQAAAQL---S 176
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ VKP GSS+GV+ V D A + L D +L +E G V
Sbjct: 177 LPMFVKPANQGSSVGVS---KVSDEAGFAAALALGFEFDH---KLLIEQGI--------V 222
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +C VL E ++ G +V D + Y KYL Q P P + +
Sbjct: 223 GREVEC--AVLGNDEAQVSVCG--EVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQ 278
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A ++ LG +R+D +F+ TE I+ ++N + G
Sbjct: 279 VRDVALQAYKVLGCAGLSRVD-FFV----------------TEAREIIINEVNTLPGFTS 321
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G S++ ++ +I A R
Sbjct: 322 ISMYPKLWQATGLSYAELIHRLIVLALER 350
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ LL VP+ G V+AS CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLASAACMDKDVTK---RLLRDAGIAVAP 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
V + + L + + ++L + VKPA G S GV+++
Sbjct: 157 FMVLNRGESLS------FAQAAAQLSL-PMFVKPANQGSSVGVSKV 195
>gi|399524277|ref|ZP_10764839.1| D-ala D-ala ligase N-terminal domain protein [Atopobium sp. ICM58]
gi|398374551|gb|EJN52151.1| D-ala D-ala ligase N-terminal domain protein [Atopobium sp. ICM58]
Length = 344
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 149/365 (40%), Gaps = 82/365 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V +I GG + ER +S+ S R V + I + Y +D
Sbjct: 4 KVLIISGGLTHERDVSVRSGRRVAN----------------------ILTQAGYDVVISD 41
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D L G++ F+ D+V+P +HG GEDG +Q LE VPFVG+ +
Sbjct: 42 VDASLA------GAIESFSP------DVVWPLVHGSIGEDGSLQSFLESVGVPFVGSSAV 89
Query: 199 ACRQAFDKYDA-----SLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN-SGKV 252
A +K A S ++ G++T+P + + +L V + L+ + S V
Sbjct: 90 QAMLASNKPTAKALLGSAGLATPGWVTLPQAIFR-------QLGASNVLSALEGSVSFPV 142
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
V+KPT GS++G++ A+ + + G R++VE +E G + V+D+ G
Sbjct: 143 VIKPTDGGSALGISTAHNAKELRRSMVDAFAYG--QRLMVEQRIE-GRDVAVSVVDLEGG 199
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
PV L P EV ++Y +Y T + Y P R + ++
Sbjct: 200 ----PVALPPVEVA----------TDGGRYDYDARYT-TDEAVYFVPARLSSEALADLQA 244
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A LGL D +R+D + + GT F D N+ GM TS
Sbjct: 245 AAVEAHTTLGLRDLSRMD-----------------FVVDDEGTCWFIDANVAPGMTDTSL 287
Query: 433 LFQQA 437
L Q A
Sbjct: 288 LPQAA 292
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 112/293 (38%), Gaps = 60/293 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
V+ VHG IGEDG+LQS LE+ GVP+ G + + +K L LA G +T+
Sbjct: 58 VWPLVHGSIGEDGSLQSFLESVGVPFVGSSAVQAMLASNKPTAKALLGSAGLATPGWVTL 117
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+ + R + ++ L + + +KP G + G++ A++L
Sbjct: 118 PQAIFR-----QLGASNVLSALEGSVSFP-VVIKPTDGGSALGISTAHNAKELR------ 165
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
R ++F A+G RLM +
Sbjct: 166 -----RSMVDAF--AYGQ----------------------------------RLMVEQRI 184
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
++ V V+ G +L P V V G + ++ + P + +S+EAL
Sbjct: 185 EGRDVAVSVVDLEGGPVAL-PPVEVATDGGRYDYDARYTTDEAVYFVP---ARLSSEALA 240
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+ L L SR+D FV D G I+ N PGMT +++L A
Sbjct: 241 DLQAAAVEAHTTLGLRDLSRMD-FVVDDEGTCWFIDANVAPGMTDTSLLPQAA 292
>gi|443289348|ref|ZP_21028442.1| D-alanine-D-alanine ligase A [Micromonospora lupini str. Lupac 08]
gi|385887501|emb|CCH16516.1| D-alanine-D-alanine ligase A [Micromonospora lupini str. Lupac 08]
Length = 369
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 156/394 (39%), Gaps = 54/394 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAISSA 129
RV ++ GG S E GIS SA SV + D+ V I R + +AI++
Sbjct: 11 RVAIVFGGRSPEHGISCVSAGSVFAALDPDEYEVVPVGITRAGQWVLTSGDPAQFAINAR 70
Query: 130 Q---VYSNTPADFDFKLESLAQGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEVL 185
Q + + + AD + + G L A A+VD+VFP +HG +GEDG IQ +L
Sbjct: 71 QLPEITAESGADVVLRADPTGNGLMVLDPTEGPRALADVDVVFPVLHGTYGEDGTIQGML 130
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF-ITVPSFLLQGSEVNESELSNWFVTNK 244
E +P+VG A A DK + +G + + L G ++E + +
Sbjct: 131 EMAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGAYAVLRNGMTLSEQDKERLGL--- 187
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
V VKP+RAGSS G+T D L A + D +V++E + G E
Sbjct: 188 ------PVFVKPSRAGSSFGITRVTDWAD-LDAAVATARQ-FDPKVIIEAAIV-GREIEC 238
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL+ +G VL V V + D +++ KYL Y P P
Sbjct: 239 GVLEGEAGGAPEASVLAEVRV---------VADHD-FYDFEAKYL-DDSCEYDIPAGLPD 287
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V ++E A F L AR D + P + +IN +
Sbjct: 288 RVTRQVQEYAVRAFTALDCAGLARADFFVTPEL-----------------DVYLNEINTM 330
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G TS + + G + ++ +I A R
Sbjct: 331 PGFTPTSMFPRMWTASGLEYPKLVNRLIRTAQRR 364
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 110/299 (36%), Gaps = 83/299 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-SLALNHLADLGVLTIN 696
VF +HG GEDGT+Q +LE G+PY G V AS MDK T L +G +
Sbjct: 112 VFPVLHGTYGEDGTIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGAYAVL 171
Query: 697 KD----VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
++ + ++ L P+ VKP+R G S G+ R+ DL V
Sbjct: 172 RNGMTLSEQDKERLGLPVF----------------VKPSRAGSSFGITRVTDWADLDAAV 215
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ F+P V + +
Sbjct: 216 ATARQ----------------------------FDPKVIIEAAIVGR------------- 234
Query: 813 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
EI GV+ G+ G S++ V V D E K+ + P
Sbjct: 235 ------EIECGVLEGEAGGAPEASVLAEVRVVADHDFYDFEAKYLDDSCEYDIP------ 282
Query: 870 STEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
D+ ++++ A AL G +R D FV + +V + E+NT+PG TP+++
Sbjct: 283 -AGLPDRVTRQVQEYAVRAFTALDCAGLARADFFVTPEL-DVYLNEINTMPGFTPTSMF 339
>gi|161779852|gb|ABX79413.1| VanC4 [Enterococcus casseliflavus]
Length = 350
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 158/396 (39%), Gaps = 78/396 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT--- 135
++ +I GG S E +SL SA S ++ +Q Y D +L A + Y T
Sbjct: 3 KIAIIFGGNSPEYAVSLASATSAIEALQSSP-----YDYDLSLIGIAPDAMDWYLYTGEL 57
Query: 136 ----------PADFDFKLESLAQGFGS-LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEV 184
K++ L +G G LSE + L D++FP +HG++GEDG IQ +
Sbjct: 58 ENIRQDTWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVP--DVLFPIMHGKYGEDGSIQGL 115
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
E +P+VG G A +K+ G + P+ LL + + ++ + T+
Sbjct: 116 FELMKLPYVGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTNQDNQQRQIEAFIQTHD 175
Query: 245 LDPNSGKVVVKPTRAGSSIGVT-------VAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297
V KP AGSS G+T +A + ++ ++L+ V + +
Sbjct: 176 F-----PVFFKPNEAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGIL 230
Query: 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY-LPTQQVAY 356
G T VG+ C + L+ + F++ KY L + ++
Sbjct: 231 GNDSLT-----VGA---CDAISLV-----------------EGFFDFEEKYQLISAKIT- 264
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P P + ++E A LL+ LGL ARID + T+ G +
Sbjct: 265 -VPAPLPETIETKVKEQAQLLYHSLGLKGLARID-----------------FFVTDQGEL 306
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
+IN + G S + +G S+ +L+ ++
Sbjct: 307 YLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLL 342
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 132/330 (40%), Gaps = 78/330 (23%)
Query: 600 VEGLKKHSWFTGFDIADEL-PMRHSINEWIKLAKENQATV----FIAVHGGIGEDGTLQS 654
+E +++ +W ++ P+ W L++E Q V F +HG GEDG++Q
Sbjct: 57 LENIRQDTWLLDTKHKQKIQPLFEGNGFW--LSEEQQTLVPDVLFPIMHGKYGEDGSIQG 114
Query: 655 LLEAEGVPYTGPGVMASKTCMDK-----VATSLALNHLADLGVLTINKDVRRKEDLLKTP 709
L E +PY G GV AS CM+K A ++ + + + + R+ E ++T
Sbjct: 115 LFELMKLPYVGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTNQDNQQRQIEAFIQT- 173
Query: 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSR 769
H+ + KP G S G+ ++ C E++ +K
Sbjct: 174 -----HDF-------PVFFKPNEAGSSKGITKVTCVEEIAPALK---------------- 205
Query: 770 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG 829
E F +L + N VEI G++G
Sbjct: 206 -----------------EAFAYCSAVLL--------------QKNIAGVEIGCGILGNDS 234
Query: 830 SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889
++++ E EEK+Q + P P + K K++ +L+ ++L
Sbjct: 235 LTVGACDAISLVEG--FFDFEEKYQLISAKITVPAP---LPETIETKVKEQAQLLYHSLG 289
Query: 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L+G +RID FV D GE+ + E+NT+PG T
Sbjct: 290 LKGLARIDFFVT-DQGELYLNEINTMPGFT 318
>gi|399528026|ref|ZP_10767692.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp.
ICM39]
gi|398361429|gb|EJN45192.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp.
ICM39]
Length = 342
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 151/370 (40%), Gaps = 92/370 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V +I GG + ER +S+ S R V + + VR +D
Sbjct: 4 KVLIIAGGLTHERDVSVRSGRRVANILTQFGYEVRISDVD-------------------- 43
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
SLA S S D+V+P +HG GEDG +Q LE +PFVG+ S
Sbjct: 44 -----ASLADAISSFSP---------DVVWPLVHGSIGEDGSLQSFLESVGIPFVGSSSV 89
Query: 199 ACRQAFDKYDA-----SLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN-SGKV 252
A +K A S ++ G++T+P + + +L V + L+ + S V
Sbjct: 90 QAMLASNKPTAKALLGSAGLATPGWVTLPQAIFR-------QLGASHVLSALEGSVSFPV 142
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID-----DRVVVELFLEGGSEFTAIVL 307
V+KPT GS++G++ A + AK + +D R++VE + G + V+
Sbjct: 143 VIKPTDGGSALGISTA-------QDAKALRRAMVDAFAYGQRLMVEQRIN-GRDVAVSVV 194
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
D+ G PV L P EV R + ++Y +Y T + Y P R ++
Sbjct: 195 DLWDG----PVALPPVEVSTD-------RGR---YDYDARYT-TDETEYFVPARLSDELL 239
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++ A LGL D +R+D + + GT F D N+ GM
Sbjct: 240 ADLQAAAVEAHTTLGLRDLSRMD-----------------FVVDDEGTCWFIDANVAPGM 282
Query: 428 EQTSFLFQQA 437
TS L Q A
Sbjct: 283 TDTSLLPQAA 292
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
V+ VHG IGEDG+LQS LE+ G+P+ G + + +K L LA G +T+
Sbjct: 58 VWPLVHGSIGEDGSLQSFLESVGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTL 117
Query: 696 NKDVRRK 702
+ + R+
Sbjct: 118 PQAIFRQ 124
>gi|372276598|ref|ZP_09512634.1| D-alanine--D-alanine ligase [Pantoea sp. SL1_M5]
Length = 365
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 168/404 (41%), Gaps = 59/404 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA+++L+ I V ID+ + ++ A + +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQ-GHWRLNDASNFLLNAE 62
Query: 135 TPA--DFDFKLESLAQGFGS-----LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E +A G+ ++ H + +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALIALNHAAEDVALVPGTTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
++PFVG+ + DK + G P + ++ ++L V +
Sbjct: 123 ASLPFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAP--WVSVTQAQRAQLDASAVIARF-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKK--AKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ +KP GSS+GV+ +DS+++ A ++ D +V++E ++ G E
Sbjct: 179 -GLPLFIKPANQGSSVGVS----KVDSIEEFDAALVLAFSFDRKVLIEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C VV+ DA ++Y KY+ P
Sbjct: 233 VLGNDAPEASPCGEVVV-----------------HDAFYSYDTKYISESGAQTVVPAAIS 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
++IRE A F L AR+D VF +++ G I+ ++N
Sbjct: 276 PETSDAIREVAIKAFTALECFGMARVD---------VFLTAD--------GEIIVNEVNT 318
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ G S + G S+ +++ +I A R ++ S
Sbjct: 319 LPGFTNISMYPKLWQAAGLSYQDLISRLIDLAIERHQQASTLKS 362
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 103/467 (22%), Positives = 170/467 (36%), Gaps = 128/467 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V ++FGG ++E +VSL S N+ L+A + LL ID N D+S+
Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNI---LEAIDKTRFDVVLLG--IDKQGHWRLN----DASN 56
Query: 554 RVVWSL-PYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
++ + P + L H E+V LV G + T
Sbjct: 57 FLLNAENPALIALNHAAEDVA-------------------------LVPGTTQQQIIT-- 89
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
RH+ + ++ +F VHG +GEDG+LQ LL +P+ G V+ S
Sbjct: 90 --------RHNAHPLSQID-----VIFPIVHGTLGEDGSLQGLLRMASLPFVGSDVLGSA 136
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------- 725
MDK K + R L P V + ++L
Sbjct: 137 VSMDK----------------DFTKRLLRDAGLNVAPWVSVTQAQRAQLDASAVIARFGL 180
Query: 726 -LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784
L +KPA G S GV+++ E+ + + SF R
Sbjct: 181 PLFIKPANQGSSVGVSKVDSIEEFDAAL---------VLAFSFDR--------------- 216
Query: 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG 844
+++ + + EI V+G S V V ++
Sbjct: 217 -----------------------KVLIEQGIKGREIECAVLGNDAPEASPCGEVVVHDA- 252
Query: 845 DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN 904
S + K+ +G P A +S E D ++ AL+ G +R+D F+ D
Sbjct: 253 -FYSYDTKYISESGAQTVVPAA--ISPETSDAIREVAIKAFTALECFGMARVDVFLTAD- 308
Query: 905 GEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
GE+++ EVNT+PG T + ++ L + + +++DL ER
Sbjct: 309 GEIIVNEVNTLPGFT--NISMYPKLWQAAGLSYQDLISRLIDLAIER 353
>gi|300741707|ref|ZP_07071728.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567]
gi|300380892|gb|EFJ77454.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567]
Length = 374
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 156/395 (39%), Gaps = 51/395 (12%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS---NTP 136
V L+CGG S+E ISL +A VL I V I ++ Y + ++ + P
Sbjct: 10 VALLCGGRSSEHPISLITAVGVLSAIDSSVYDVVTIGITKDGRWYLTNLEELSALLDAAP 69
Query: 137 ADFDFKLES----LAQGFGSLSEFAEHLAAN------VDIVFPTIHGRFGEDGGIQEVLE 186
A +F S L G G N +D+VFP IHG FGEDG IQ +LE
Sbjct: 70 AHAEFTGGSHQVFLPLGAGDSRVHLVDADGNLEYGPALDVVFPLIHGPFGEDGTIQGLLE 129
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE-VNESELSNWFVTNKL 245
+P+VG G A DK+ + G P ++ + +E E S +T
Sbjct: 130 LAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTDRQWTHEREESLKRITALG 189
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFT 303
P + VKPTRAGSS G+T +D ++ I E D +++VE + G E
Sbjct: 190 YP----MFVKPTRAGSSFGIT----KVDKFEELVPAIEEARRHDAKIIVEAGIV-GREIE 240
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VLD G P P E+E+ V E +++ KY+ P P
Sbjct: 241 CGVLDGHHG--DMPRASYPGEIEV-------VDEDHGFYDFDAKYISKSSAVTRCPADLP 291
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ +R A F L +R D ++ P G ++ ++N
Sbjct: 292 KDMQERLRALAVKAFLALDGEGLSRADFFYTPD-----------------GRLVINEVNT 334
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S G S++ ++ ++ A R
Sbjct: 335 MPGFTPISMYKTMWENTGISYTELIDELLTLALER 369
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD----KVATSLALNHLADLGVL 693
VF +HG GEDGT+Q LLE +PY G GV AS MD KVA A + V+
Sbjct: 110 VFPLIHGPFGEDGTIQGLLELAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVV 169
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T + +E+ LK I + + + VKP R G S G+ ++ E+L V
Sbjct: 170 TDRQWTHEREESLKR-ITALGY---------PMFVKPTRAGSSFGITKVDKFEEL---VP 216
Query: 754 ALEEC 758
A+EE
Sbjct: 217 AIEEA 221
>gi|299538056|ref|ZP_07051341.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1]
gi|424736107|ref|ZP_18164567.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZB2]
gi|298726258|gb|EFI66848.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1]
gi|422949710|gb|EKU44083.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZB2]
Length = 302
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 153/385 (39%), Gaps = 103/385 (26%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++VG+I GG S+E+ +S+ + + ++ + Q Y
Sbjct: 1 MKVGVIMGGTSSEKQVSIMTGKEMVAQL----------------------DKQKYEVVAI 38
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D E +A+ ++D+ +HG+FGEDG IQ VLE +P+ G+G
Sbjct: 39 TLDDNKEVIAK------------VGDIDVALLALHGKFGEDGTIQGVLETLGIPYTGSGL 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSF--LLQGSE--VNESELSNWFVTNKLDPNSGKVV 253
A DK A + +G T P + L++G E + + EL + +V
Sbjct: 87 LASSLCMDKTMAKKILRYEGVAT-PDWVHLIKGEELPLQDIELMGY-----------PLV 134
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI------DDRVVVELFLEGGSEFTAIVL 307
VKP GSS+GV + + + +L I D+ ++E +L G E T +L
Sbjct: 135 VKPNAGGSSVGVQIVHD--------RSALLAAITEVFKWDNESIIEQYLI-GDEITCPIL 185
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
+ LLP + ++ F+Y+ KY V P P+ +
Sbjct: 186 NEQ---------LLPV---------LSIKHTAVFFDYQAKYDDASTV--EEPVELPLAIH 225
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ + + A + ++ L +AR+D +V ++N + GM
Sbjct: 226 DRVAKAAMISYKALRCTVYARVDMLIKDGVPYVL------------------EVNTLPGM 267
Query: 428 EQTSFLFQQASKVGFSHSNILRTII 452
Q S L + A G S+S +L +II
Sbjct: 268 TQNSLLPKSALAAGISYSALLDSII 292
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 13/102 (12%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN-K 697
+A+HG GEDGT+Q +LE G+PYTG G++AS CMDK ++A L GV T +
Sbjct: 57 LLALHGKFGEDGTIQGVLETLGIPYTGSGLLASSLCMDK---TMAKKILRYEGVATPDWV 113
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 739
+ + E+L P+ DI +L L VKP G S GV
Sbjct: 114 HLIKGEEL---PLQDI------ELMGYPLVVKPNAGGSSVGV 146
>gi|315037378|ref|YP_004030946.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112]
gi|325955848|ref|YP_004286458.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC]
gi|385816745|ref|YP_005853135.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL1118]
gi|312275511|gb|ADQ58151.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112]
gi|325332413|gb|ADZ06321.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC]
gi|327182683|gb|AEA31130.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL1118]
Length = 360
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 157/392 (40%), Gaps = 53/392 (13%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ ++VGLI GG S+E +S+ S ++ I D V +I N +A
Sbjct: 3 KKIQVGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWI-TNEGYFANEEESFKVLE 61
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+ K +L E E+L +D+ FP +HG GEDG +Q + N PFVG
Sbjct: 62 DPSYQVKNPHKVHNISNLIEL-ENLP-EIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGD 119
Query: 196 GSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
A DK + K G +I++ F + + N +L V KL +
Sbjct: 120 DVLAAAVTMDKEFTKILAQKVGVPVADWISIKRF--EYDDKNNDKLDYEKVAEKLGRD-- 175
Query: 251 KVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ VKP+ GSS+G VT A +L++A DD+V+VE + G TA++
Sbjct: 176 -MFVKPSNQGSSVGVNHVTNADEYAAALEEAF-----KYDDKVLVEETVPGTEVETAVL- 228
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
G D P+V ++ K + + Y KY P P +I
Sbjct: 229 ----GND-KPIVAGVGQI---------TNAKGSFYTYENKYDDNSTSKLQIPADLPDEII 274
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+++R+ A +++ ARID P G ++ T++N + G
Sbjct: 275 DTVRKNARKVYEVTECSGMARIDSMLTPG-----------------GKVVLTEVNALPGF 317
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G ++ ++ +I RF
Sbjct: 318 TNISMYPKLFEEAGIPYTELITRLIEAGMERF 349
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 134/337 (39%), Gaps = 67/337 (19%)
Query: 622 HSINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
H+I+ I+L + VF VHG +GEDG LQ L P+ G V+A+ MDK T
Sbjct: 74 HNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAVTMDKEFT 133
Query: 681 SLALNH----LAD-LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 735
+ +AD + + D + + L + ++ KL + + VKP+ G
Sbjct: 134 KILAQKVGVPVADWISIKRFEYDDKNNDKL-------DYEKVAEKL-GRDMFVKPSNQGS 185
Query: 736 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795
S GV + A++ Y ALEE
Sbjct: 186 SVGVNHVTNADE---YAAALEEAF------------------------------------ 206
Query: 796 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 855
K D+++ + E+ V+G + + + +T G + E K+
Sbjct: 207 --------KYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQIT-NAKGSFYTYENKYDD 257
Query: 856 GTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915
+ L P + + E +D ++ + + G +RID+ + G+V++ EVN +
Sbjct: 258 NSTSKLQIP--ADLPDEIIDTVRKNARKVYEVTECSGMARIDSML-TPGGKVVLTEVNAL 314
Query: 916 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
PG T + ++ L E+ + + ++++ G ERF
Sbjct: 315 PGFT--NISMYPKLFEEAGIPYTELITRLIEAGMERF 349
>gi|359796556|ref|ZP_09299153.1| D-alanine--D-alanine ligase [Achromobacter arsenitoxydans SY8]
gi|359365519|gb|EHK67219.1| D-alanine--D-alanine ligase [Achromobacter arsenitoxydans SY8]
Length = 316
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 148/380 (38%), Gaps = 78/380 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S + V A+ SA V ++
Sbjct: 7 KVGVLYGGKSAEREVSLMSGKGVQQ---------------------ALISAGVDAHL--- 42
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G SL+E A A D VF +HGR+GEDG IQ LE +P+ G+G
Sbjct: 43 FD-------TGERSLAELA---AEGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPM 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK + G T P F EV +++ V ++L S +++KP
Sbjct: 93 ASALAMDKTMTKRIWLQHGLPT-PDF-----EVLDADTELRLVPDRL---SLPLIIKPPH 143
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G+T G D K D V+ E F+ G E T VL G PV
Sbjct: 144 EGSTVGITKVVGYSD--MKEAYAAAARFDAEVLAEQFIT-GRELTVAVLGSGKSARALPV 200
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+++ ++Y KY + Y P P V + A +
Sbjct: 201 --------------IEIAAPGGNYDYEHKYF-SDDTQYFCPATLPPEVAEEVARIAVKAY 245
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
Q LG + R D F+ + W ++N GM S + A
Sbjct: 246 QTLGCEGWGRAD--FI-----------LDRDNRPW----LLEMNTSPGMTGHSLVPMAAK 288
Query: 439 KVGFSHSNILRTIIGHACSR 458
VG S++++ I+ A +
Sbjct: 289 AVGISYADLCVAILSEASCK 308
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 112/295 (37%), Gaps = 72/295 (24%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 686
+LA E VFIA+HG GEDGT+Q LE G+PYTG G MAS MDK T + L H
Sbjct: 52 ELAAEGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRIWLQHG 111
Query: 687 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
D VL + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPDFEVLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
D+ K R ++ E F+ E+
Sbjct: 156 YSDM----KEAYAAAARFDAE------------------VLAEQFITGREL--------- 184
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
TV V+G S +L P + + G E K+ P
Sbjct: 185 ----------------TVAVLGSGKSARAL-PVIEIAAPGGNYDYEHKYFSDDTQYFCP- 226
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + E ++ + L EG+ R D ++ DN ++E+NT PGMT
Sbjct: 227 --ATLPPEVAEEVARIAVKAYQTLGCEGWGRADFILDRDN-RPWLLEMNTSPGMT 278
>gi|422322615|ref|ZP_16403655.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54]
gi|317402453|gb|EFV83022.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54]
Length = 316
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 156/387 (40%), Gaps = 82/387 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S V A+ SA V ++
Sbjct: 7 KVGVLYGGRSAEREVSLMSGAGVHQ---------------------ALLSAGVDAHL--- 42
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G SL+E A A + VF +HGRFGEDG IQ LE +P+ G+G
Sbjct: 43 FD-------TGERSLAELA---AEGFERVFIALHGRFGEDGSIQGALELLGIPYTGSGPL 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN--SGKVVVKP 256
A A DK M+K+ +L G E EL + +L P+ S +++KP
Sbjct: 93 ASALAMDK-----TMTKR------VWLQHGLPTPEFELLDADTELRLVPDRLSLPLIIKP 141
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GS++G+T G D +K+A + + D V+ E F++ G E T +L G
Sbjct: 142 PHEGSTVGITKVVGYSD-MKEAYALAAK-FDAEVLAEQFIQ-GRELTVAILGGGKSARAL 198
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
PV +++ ++Y KY + Y P P V + + A
Sbjct: 199 PV--------------IEIAAPGGNYDYEHKYF-SDDTQYFCPAALPPAVAEEVADIAVR 243
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
++ LG + R D F+ + + W ++N GM S +
Sbjct: 244 AYRALGCEGWGRAD--FMLDADN-----------RPW----LLEMNTSPGMTSHSLVPMA 286
Query: 437 ASKVGFSHSNILRTIIGHACSRFPNLA 463
A G S++ + I+ A + + A
Sbjct: 287 ARATGMSYAELCVAILADASCKLHSAA 313
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 122/303 (40%), Gaps = 78/303 (25%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 686
+LA E VFIA+HG GEDG++Q LE G+PYTG G +AS MDK T + L H
Sbjct: 52 ELAAEGFERVFIALHGRFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHG 111
Query: 687 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
+ +L + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPEFELLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
D+ A+ + + E+L E F++ E
Sbjct: 156 YSDM-------------------KEAYALAAKFD--AEVLA-EQFIQGRE---------- 183
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP- 863
+TV ++G S +L P + + G E K+ P
Sbjct: 184 ---------------LTVAILGGGKSARAL-PVIEIAAPGGNYDYEHKYFSDDTQYFCPA 227
Query: 864 --PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921
PPA ++ E D + AL EG+ R D ++ DN ++E+NT PGMT
Sbjct: 228 ALPPA--VAEEVADIAVRAY----RALGCEGWGRADFMLDADN-RPWLLEMNTSPGMTSH 280
Query: 922 TVL 924
+++
Sbjct: 281 SLV 283
>gi|322377428|ref|ZP_08051919.1| D-alanine--D-alanine ligase [Streptococcus sp. M334]
gi|321281628|gb|EFX58637.1| D-alanine--D-alanine ligase [Streptococcus sp. M334]
Length = 347
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 169/390 (43%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KL--ESLAQGFG-SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ E++A + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIAWDKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ +++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPDLIERLVDLAKESF 339
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 126/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
>gi|255324604|ref|ZP_05365721.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
SK141]
gi|255298510|gb|EET77810.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
SK141]
Length = 353
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 156/390 (40%), Gaps = 52/390 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQ 130
RV +I GG S E +S SA ++++H+ + V I R +
Sbjct: 6 RVAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVM 65
Query: 131 VYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
N A+ L+ A+G F ++++ L A VD+VFP +HG FGEDG IQ + E
Sbjct: 66 PEVNPGAELTLSLDPNARGQFHNVTDGT--LFAEVDVVFPILHGPFGEDGTIQGLFELSG 123
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG-SEVNESELSNWFVTNKLDPN 248
+P+VG G A DK ++ P +L+G +E++E E +
Sbjct: 124 LPYVGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQRLGL------- 176
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
V VKP R GSSIGV+ + A + LE D++++VE + G E VL
Sbjct: 177 --PVFVKPARGGSSIGVS-KVNSWEEFPAAVDLALED-DEKILVEPEIV-GQEVEIGVLH 231
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G L V G D E + + KYL V P F +
Sbjct: 232 YADG-------TLLASVPALLAGIDDSDE--GFYGFDTKYL-DNVVTAEIPAPFAPELTE 281
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+R+ A F+ L +R+D F + E+ Y +IN + G
Sbjct: 282 KLRDMAIRAFEALNCEGLSRVD---------FFVTEESVY---------INEINTLPGFT 323
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S Q + G + +L +I A ++
Sbjct: 324 PISMYPQVLAASGVEYPALLEALIEQALAK 353
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 130/317 (41%), Gaps = 64/317 (20%)
Query: 622 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 681
H++ + A+ + VF +HG GEDGT+Q L E G+PY GPGV+AS MDK T
Sbjct: 87 HNVTDGTLFAEVD--VVFPILHGPFGEDGTIQGLFELSGLPYVGPGVLASSVGMDKEFTK 144
Query: 682 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
L ADL V E +LK ++ + +L VKPAR G S GV++
Sbjct: 145 KVLAA-ADLPV--------APEVILKG-RTELSEDEKQRLGLPVF-VKPARGGSSIGVSK 193
Query: 742 LCCAEDLTVYVK-ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800
+ E+ V ALE+ E ++ EP + E+
Sbjct: 194 VNSWEEFPAAVDLALEDD-----------------------EKILVEPEIVGQEVEI--- 227
Query: 801 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
G + + T+ S+ +L+ + + G + K+
Sbjct: 228 ------------GVLHYADGTL-----LASVPALLAGIDDSDEG-FYGFDTKYLDNVVTA 269
Query: 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
P P + TE L R AL EG SR+D FV ++ V I E+NT+PG TP
Sbjct: 270 EIPAPFAPELTEKLRDMAIR---AFEALNCEGLSRVDFFVTEES--VYINEINTLPGFTP 324
Query: 921 STVLIHQALSEQPPMYP 937
+ + Q L+ YP
Sbjct: 325 IS-MYPQVLAASGVEYP 340
>gi|319944696|ref|ZP_08018960.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
gi|319741945|gb|EFV94368.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
Length = 334
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 156/386 (40%), Gaps = 87/386 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV ++ GG S+ER +SL+S R+VL +Q + +NA A A+
Sbjct: 21 RVVVLMGGHSSERNVSLDSGRNVLKALQA-----------KGVNAEAFDPAE-------- 61
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ G L + A D F +HGR+GEDG IQ VLE +P+ G+G
Sbjct: 62 ---------RSLGDLEK------AGYDRAFIALHGRYGEDGTIQGVLEMLGIPYTGSGVM 106
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK ++ +M + G + P + E L + + +++KP
Sbjct: 107 ASAVAIDKI-STKQMWQAGRLPTPPW--------EVLLGPHQLAGLAERLGLPLIIKPPH 157
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GS++G+T +DSL + ID V+ E F++ G E T V+ G+
Sbjct: 158 EGSTLGLT----RVDSLDRLPAAYERAADIDFPVLAERFVQ-GRELTVAVIGSGAAARAL 212
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP-PRFPIVV--INSIREG 373
P+ V++R + ++YR KY T Y P P P + I S+ E
Sbjct: 213 PI--------------VEIRAPNGNYDYRNKYF-TDDTRYLCPAPLVPAMAADIASLAEA 257
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A ++ +G + R+D L T W ++N GM S +
Sbjct: 258 A---YRAVGCEGWGRVD-IMLDDGTQ-----------RPW----LLEVNTSPGMTGHSLV 298
Query: 434 FQQASKVGFSHSNILRTIIGHACSRF 459
A G S+ +++ + A +
Sbjct: 299 PMAARAAGISYEDLVLGLTAQASLKI 324
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 114/298 (38%), Gaps = 79/298 (26%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L K FIA+HG GEDGT+Q +LE G+PYTG GVMAS +DK++T
Sbjct: 67 LEKAGYDRAFIALHGRYGEDGTIQGVLEMLGIPYTGSGVMASAVAIDKIST--------- 117
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC--------VKPARDGCSTGVAR 741
K + + L P W L Q L +KP +G + G+ R
Sbjct: 118 -------KQMWQAGRLPTPP----WEVLLGPHQLAGLAERLGLPLIIKPPHEGSTLGLTR 166
Query: 742 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 801
+ + L P ++ RA I+ P ++ E FV+
Sbjct: 167 VDSLDRL---------------PAAYERAAD-IDFP------VLAERFVQGR-------- 196
Query: 802 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861
E+TV VIG G+ +P V ++ K+ L
Sbjct: 197 -----------------ELTVAVIG-SGAAARALPIVEIRAPNGNYDYRNKYFTDDTRYL 238
Query: 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
P P ++ A D E A+ EG+ R+D ++ ++EVNT PGMT
Sbjct: 239 CPAP--LVPAMAAD-IASLAEAAYRAVGCEGWGRVDIMLDDGTQRPWLLEVNTSPGMT 293
>gi|322834418|ref|YP_004214445.1| D-alanine--D-alanine ligase [Rahnella sp. Y9602]
gi|384259640|ref|YP_005403574.1| D-alanine--D-alanine ligase [Rahnella aquatilis HX2]
gi|321169619|gb|ADW75318.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
gi|380755616|gb|AFE60007.1| D-alanine--D-alanine ligase [Rahnella aquatilis HX2]
Length = 306
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 135/333 (40%), Gaps = 93/333 (27%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L +E + VFIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK T L L
Sbjct: 50 LKEEGYSKVFIALHGRGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALG- 108
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWH---------ELTSKLQCKTL--CVKPARDGCSTG 738
L TP V + L +K+ L VKP+R+G S G
Sbjct: 109 ---------------LPVTPFVALHRAQIEEAGQGALAAKIAELGLPVIVKPSREGSSVG 153
Query: 739 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 798
++++ ++L + AL+E F D +L
Sbjct: 154 MSKVTTEKEL---LPALQEG------------------------------FRHDDNVLI- 179
Query: 799 SQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 855
+W+ E TV ++G +MPS+ ++ +G + K+
Sbjct: 180 ----------------EKWLSGPEYTVAIVGS-----QVMPSIRIQPAGTFYDYQAKYLS 218
Query: 856 GTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNT 914
P S EA ++ + L A AL G+ R+D + D G ++EVNT
Sbjct: 219 DETQYFCPSGLS----EAQEQQLTALALQAYQALDCSGWGRVDVMQDGD-GNFNLLEVNT 273
Query: 915 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 947
PGMT S L+ A +P FR +L+L
Sbjct: 274 SPGMT-SHSLVPMAAKHAGLSFPQLVFR-ILEL 304
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 128/314 (40%), Gaps = 62/314 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S +VL ++ V + ID A+ + YS
Sbjct: 4 KVAVLLGGTSAERDVSLQSGAAVLAGLRESG--VDAHGIDTKTFNVALLKEEGYSK---- 57
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
VF +HGR GEDG +Q +LE+ +P+ G+G
Sbjct: 58 ----------------------------VFIALHGRGGEDGTLQGLLEQIGLPYTGSGVM 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK+ L G P L +++ E+ + K+ V+VKP+R
Sbjct: 90 ASALTMDKFRTKLVWQALGLPVTPFVALHRAQIEEA--GQGALAAKIAELGLPVIVKPSR 147
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ + + K+ + EG DD V++E +L G E+T + VGS
Sbjct: 148 EGSSVGMS----KVTTEKELLPALQEGFRHDDNVLIEKWLS-GPEYTVAI--VGS----- 195
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
Q S+ ++ ++Y+ KYL + + Y P + A
Sbjct: 196 -----------QVMPSIRIQPAGTFYDYQAKYL-SDETQYFCPSGLSEAQEQQLTALALQ 243
Query: 377 LFQRLGLCDFARID 390
+Q L + R+D
Sbjct: 244 AYQALDCSGWGRVD 257
>gi|358464407|ref|ZP_09174371.1| D-ala D-ala ligase protein [Streptococcus sp. oral taxon 058 str.
F0407]
gi|357066807|gb|EHI76940.1| D-ala D-ala ligase protein [Streptococcus sp. oral taxon 058 str.
F0407]
Length = 347
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V S+++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-SKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV++E G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLIE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETTFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTSKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLIEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETTFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|354586204|ref|ZP_09004798.1| D-alanine/D-alanine ligase [Paenibacillus lactis 154]
gi|353182361|gb|EHB47895.1| D-alanine/D-alanine ligase [Paenibacillus lactis 154]
Length = 364
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 169/396 (42%), Gaps = 55/396 (13%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS 133
G L VGL+ GG S E +SL++A +V++ D + +YI + + ++ +
Sbjct: 2 GQDKLTVGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYDIMPFYISKQ------GAWRIGT 55
Query: 134 NTPADFDFKLE-SLAQGFGS---LSEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVL 185
A F + E LA+G G+ L+ L + VDI+FP +HG FGEDG IQ +
Sbjct: 56 KLTAPFSDQEELKLAEGEGTRTALNAVFSRLYGSEEPVVDIMFPLLHGTFGEDGTIQGLF 115
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTN 243
E ++P+VGTG A DK ++ G SF E N+ EL + +
Sbjct: 116 EMADIPYVGTGVLASAAGMDKVVMKKLFAQAGLPQCEYCSFTRSQWERNQHELLQG-IED 174
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL S VKP GSS+G++ A + LK A L D++++VE F++ E
Sbjct: 175 KLGFPS---FVKPANLGSSVGISKAKDR-EQLKAAIETALR-FDNKIIVEEFVD-AREVE 228
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G D P+ +P E+ V E ++Y KY+ + Q P
Sbjct: 229 VSVL----GND-EPMASVPGEI-------VSSSE---YYDYAAKYI-SGQSKMQIPADID 272
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ +RE L + F I+G + + S+ G IL ++N
Sbjct: 273 PDTADRLRE--------LAISAFKAIEGSGITRADFFLRRSD--------GAILINEVNT 316
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ G S + G S+ +L +I R+
Sbjct: 317 MPGFTPFSMYPLLWRETGMSYRELLDRMIELGLERY 352
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 130/323 (40%), Gaps = 75/323 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA----DLGVL 693
+F +HG GEDGT+Q L E +PY G GV+AS MDKV +
Sbjct: 97 MFPLLHGTFGEDGTIQGLFEMADIPYVGTGVLASAAGMDKVVMKKLFAQAGLPQCEYCSF 156
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
T ++ R + +LL+ + KL + VKPA G S G+++ E L K
Sbjct: 157 TRSQWERNQHELLQG--------IEDKLGFPSF-VKPANLGSSVGISKAKDREQL----K 203
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
A E LR +I E FV+
Sbjct: 204 AAIETALRFDNK------------------IIVEEFVDAR-------------------- 225
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG----TGINLTPPPASIM 869
E+ V V+G M S+ G+I+S E + +G + PA I
Sbjct: 226 -----EVEVSVLGNDEPMASV--------PGEIVSSSEYYDYAAKYISGQSKMQIPADI- 271
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 929
+ D+ ++ A++ G +R D F+ +G +LI EVNT+PG TP + ++ L
Sbjct: 272 DPDTADRLRELAISAFKAIEGSGITRADFFLRRSDGAILINEVNTMPGFTPFS--MYPLL 329
Query: 930 SEQPPMYPHQFFRKVLDLGSERF 952
+ M + ++++LG ER+
Sbjct: 330 WRETGMSYRELLDRMIELGLERY 352
>gi|398952348|ref|ZP_10674737.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM33]
gi|398155276|gb|EJM43726.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM33]
Length = 364
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 163/404 (40%), Gaps = 73/404 (18%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R LRVG+I GG SAE +SL SA++++D + ID+ + N
Sbjct: 2 RKLRVGIIFGGRSAEHEVSLQSAKNIVDALDRSRFEPVLIGIDKQ--------GHWHLND 53
Query: 136 PADFDFKLES------------LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGED 178
P++F E+ LA G S+ ++ + +VD++FP +HG GED
Sbjct: 54 PSNFLLNQENPALIALNQSNRELAVVPGKASQQLVETSSQEMLGHVDVIFPIVHGTLGED 113
Query: 179 GGIQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
G +Q +L ++PFVG+ GS C DK + + G P L + +
Sbjct: 114 GCLQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFVTLTRASAARTG 170
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVEL 294
+ V ++L + VKP GSS+GV+ V D + + + L D +V++E
Sbjct: 171 FAE--VQSRLGL---PLFVKPANQGSSVGVS---KVADEAEYSAAVELALSFDTKVLIE- 221
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
+A+ SG + VL E G + VR ++Y KY+
Sbjct: 222 --------SAV-----SGREIECAVLGNEEAIASGCGEIVVR--SGFYSYDSKYIDDMAA 266
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P + IR A FQ LG AR+D + T+ G
Sbjct: 267 EVVVPANISVEASERIRALAVEAFQVLGCSGLARVDVFL-----------------TDSG 309
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+L +IN + G + S + G ++S ++ +I A +
Sbjct: 310 EVLINEINSLPGFTRISMYPKLWQATGMTYSELVTRLIELALEK 353
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 109/471 (23%), Positives = 180/471 (38%), Gaps = 136/471 (28%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P +A+ Q+V + + H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQEMLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 720
S CMDK I+K + R L TP V + + E+ S+
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRASAARTGFAEVQSR 177
Query: 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
L L VKPA G S GV+++ D Y A+E L SF
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKVA---DEAEYSAAVELAL------SFD------------ 215
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
++L S + + EI V+G ++ S + V
Sbjct: 216 ------------TKVLIESAVSGR--------------EIECAVLGNEEAIASGCGEIVV 249
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 900
+ S + K+ + P +S EA ++ + L G +R+D F+
Sbjct: 250 RSG--FYSYDSKYIDDMAAEVVVPAN--ISVEASERIRALAVEAFQVLGCSGLARVDVFL 305
Query: 901 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D+GEVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 306 T-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVTRLIELALEK 353
>gi|395238852|ref|ZP_10416754.1| D-alanine--D-alanine ligase [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477090|emb|CCI86731.1| D-alanine--D-alanine ligase [Lactobacillus gigeriorum CRBIP 24.85]
Length = 360
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 156/388 (40%), Gaps = 51/388 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTP 136
+VGLI GG S+E +S+ S ++ D I D V ++ + Y A+ + P
Sbjct: 6 QVGLIFGGNSSEYEVSIMSGSNIYDAIDKDKYDVHPIWVTND--GYFADEAESFKVLKDP 63
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
+ K +L E +D+ FP +HG GEDGG+Q + + PFVG
Sbjct: 64 T-YQVKNPHKVTNLSNLIELTN--LPEIDVFFPIVHGNLGEDGGLQGLFRLLDKPFVGDD 120
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGKVV 253
A DK + + G ++ E + +L+ FV+ KL + +
Sbjct: 121 ILAAAVTMDKEFTKILAQRVGVPVADWLTIKRPEYEDKANDKLNYDFVSQKLGTD---LF 177
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP+ GSS+GV+ + + + + + E DD+V+VE + G TA++
Sbjct: 178 VKPSNQGSSVGVS----HVTNKAEYEQALAEAFKYDDKVLVEETIPGTEVETAVL----- 228
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
G D HP+V ++ + ++Y KY P + P ++ +R
Sbjct: 229 GND-HPIVSGVGQI---------TNAAGSWYSYENKYAADSTSTLEIPAKLPAEIVEQVR 278
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A ++Q ARID T G ++ T++N + G S
Sbjct: 279 SNALKVYQVTECSGLARIDSML-----------------TADGRVVLTELNALPGFTNIS 321
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRF 459
+ + G ++ ++ +I +R+
Sbjct: 322 MYPKLFEEAGIPYTELITKLIETGQARY 349
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 121/314 (38%), Gaps = 56/314 (17%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F VHG +GEDG LQ L P+ G ++A+ MDK T + +GV +
Sbjct: 92 FPIVHGNLGEDGGLQGLFRLLDKPFVGDDILAAAVTMDKEFTKILAQR---VGVPVADWL 148
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
++ + + ++ S+ L VKP+ G S GV+ + + Y +AL E
Sbjct: 149 TIKRPEYEDKANDKLNYDFVSQKLGTDLFVKPSNQGSSVGVSHVTNKAE---YEQALAEA 205
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
K D+++ +
Sbjct: 206 F--------------------------------------------KYDDKVLVEETIPGT 221
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
E+ V+G + S + +T +G S E K+ + L P + + E +++ +
Sbjct: 222 EVETAVLGNDHPIVSGVGQIT-NAAGSWYSYENKYAADSTSTLEIP--AKLPAEIVEQVR 278
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPH 938
+ + G +RID+ + D G V++ E+N +PG T + ++ L E+ +
Sbjct: 279 SNALKVYQVTECSGLARIDSMLTAD-GRVVLTELNALPGFT--NISMYPKLFEEAGIPYT 335
Query: 939 QFFRKVLDLGSERF 952
+ K+++ G R+
Sbjct: 336 ELITKLIETGQARY 349
>gi|182625622|ref|ZP_02953392.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
JGS1721]
gi|177909174|gb|EDT71645.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
JGS1721]
Length = 302
Score = 84.0 bits (206), Expect = 3e-13, Method: Composition-based stats.
Identities = 91/377 (24%), Positives = 159/377 (42%), Gaps = 86/377 (22%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++VG+I GG S+ER +SL S S+ +HI + Y +S ++ N
Sbjct: 1 MKVGIIMGGISSEREVSLVSGESIFNHIDKEK--------------YEVS--KIIINNKR 44
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D K++ L D +HG+FGEDG +Q L+ ++P+ G G+
Sbjct: 45 DILEKVKGL------------------DFALLALHGKFGEDGTVQAFLDIMDIPYSGCGA 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ DK + S ++ K I ++ VN E ++ +K++ V VKP
Sbjct: 87 LSSSLCMDK-NLSKKVLKAENIRTAKWI----TVNSIEEIDY---DKIEEIGYPVFVKPN 138
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSS+ Y ++ K ++EG+ D+ V++E F++ G E T + + G F
Sbjct: 139 NGGSSVATFKVY----KKEEIKDAVMEGLKYDEEVIIESFVK-GREITCPIFN-GELF-- 190
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P+ ++++ K ++Y++KY A H P + + + ++E A
Sbjct: 191 -PI--------------LEIKSKADFYDYKQKY--AANGAEHLPVQLEKSLYDEVKEMAL 233
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ L +AR+D +E G ++N + GM TS Q
Sbjct: 234 KTFEVLKCEVYARVDMII-----------------SEEGVPYILEVNTLPGMTATSLFPQ 276
Query: 436 QASKVGFSHSNILRTII 452
A G S+S + II
Sbjct: 277 SAESRGISYSKFIDLII 293
Score = 50.1 bits (118), Expect = 0.007, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 677
+A+HG GEDGT+Q+ L+ +PY+G G ++S CMDK
Sbjct: 57 LLALHGKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDK 95
>gi|376290256|ref|YP_005162503.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae C7
(beta)]
gi|372103652|gb|AEX67249.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae C7
(beta)]
Length = 365
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 157/405 (38%), Gaps = 79/405 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ-------------------GDDLLVRCYYID 118
++V +I GG S+E +S SA +++ H+ G+ R +D
Sbjct: 16 IKVAIIYGGRSSEHSVSCVSAGAIMAHLDPQRYEVFPVGITHDGVWTVGEPDPTRLKTVD 75
Query: 119 RNLNAYAIS---SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRF 175
R + + S V NT + F+ SL A VD+VFP +HGRF
Sbjct: 76 RVMPEVQFTREVSLSVNPNTAGELRFEDGSLY--------------AKVDVVFPVLHGRF 121
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
GEDG IQ + E VP+VGTG + DK M+ +G +L+GSE E
Sbjct: 122 GEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEE 181
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVEL 294
V VKP R GSSIG++ V D S A + D +V+VE
Sbjct: 182 HKREL--------GLPVFVKPARGGSSIGISR---VADWSEWDAALSLAREHDSKVIVE- 229
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQ 353
+E + ++ G ++ +LQ D E D + + KYL
Sbjct: 230 -----TEIVGVEVECGVLERIDGSLMASVPAQLQ-----DTDEGDEGFYGFDTKYL-DDV 278
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
V H P F I+E + F L AR+D +F+ T+
Sbjct: 279 VTAHIPAPFDAETTALIQELSLKAFTALSCRGLARVD-FFV----------------TDH 321
Query: 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G S Q G ++ +L +I A +
Sbjct: 322 GPVL-NEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQALHK 365
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 124/312 (39%), Gaps = 89/312 (28%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q L E GVPY G GV++S MDK T L L + K
Sbjct: 113 VFPVLHGRFGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFT----KKLMAAEGLPVGK 168
Query: 698 DV--RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+V R E L + E +L VKPAR G S G++R+ D + + AL
Sbjct: 169 EVILRGSETLTE--------EHKRELGLPVF-VKPARGGSSIGISRVA---DWSEWDAAL 216
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
S +R H + VET+ +
Sbjct: 217 ----------SLAREHDS-------------KVIVETEIV-------------------- 233
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVK----ESGD--ILSLEEKFQGGTGINLTPPPASIM 869
VE+ GV+ + SLM SV + + GD + K+ P P
Sbjct: 234 -GVEVECGVLERIDG--SLMASVPAQLQDTDEGDEGFYGFDTKYLDDVVTAHIPAPFDAE 290
Query: 870 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+T + Q + L A AL G +R+D FV D+G VL E+NT+PG TP +
Sbjct: 291 TTALI----QELSLKAFTALSCRGLARVDFFVT-DHGPVL-NEINTMPGFTPIS------ 338
Query: 929 LSEQPPMYPHQF 940
MYP F
Sbjct: 339 ------MYPQVF 344
>gi|221065140|ref|ZP_03541245.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
gi|220710163|gb|EED65531.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
Length = 323
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 141/375 (37%), Gaps = 79/375 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG S+ER +SL S VL +Q + ++A+
Sbjct: 15 KVAVLMGGRSSEREVSLMSGTGVLAALQ-----------SKGVDAH-------------- 49
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
K + QG L A D F +HGR+GEDG +Q LE ++P+ G+G
Sbjct: 50 ---KFDPAEQGLDQLK------AQGFDRCFIALHGRYGEDGTVQGALELLDIPYTGSGVM 100
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK +G T ++ +E + L ++VKP R
Sbjct: 101 ASSIAMDKIMTKRIWRFEGLPTPDWRMVDSAEATRAALQAL---------GAPMIVKPAR 151
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEG-IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSSIG+T V+D+ + A+ L D V+ E F+ G E T VL G+ P
Sbjct: 152 DGSSIGLT---KVMDADECARAYELAAQYDAEVLCEQFI-AGDETTCPVLGTGAKAAALP 207
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
V + + + ++Y+ KY T YH P P I+
Sbjct: 208 V--------------IRIVAPEGNYDYQNKYF-TDTTQYHCPSGLPAAEEAEIQRIVEKA 252
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
F+ LG +AR D S F +IN GM S + A
Sbjct: 253 FRTLGCRGWARADIMIRASDRKPF----------------LLEINTSPGMTGHSLVPMAA 296
Query: 438 SKVGFSHSNILRTII 452
G S+ N+ I+
Sbjct: 297 RASGVSYENLCLGIL 311
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 119/287 (41%), Gaps = 75/287 (26%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
FIA+HG GEDGT+Q LE +PYTG GVMAS MDK+ T K
Sbjct: 70 FIALHGRYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMT----------------KR 113
Query: 699 VRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
+ R E L TP +VD + LQ + VKPARDG S G+ ++ A
Sbjct: 114 IWRFEG-LPTPDWRMVDSAEATRAALQALGAPMIVKPARDGSSIGLTKVMDA-------- 164
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
+EC +RA+ E+ ++ E F+ D
Sbjct: 165 --DEC---------ARAY---ELAAQYDAEVLCEQFIAGD-------------------- 190
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
E T V+G G+ + +P + V G+ + F T + P+ + + E
Sbjct: 191 -----ETTCPVLGT-GAKAAALPVIRIVAPEGNYDYQNKYFTDTTQYHC---PSGLPAAE 241
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ ++ +E L G++R D + + + ++E+NT PGMT
Sbjct: 242 EAE-IQRIVEKAFRTLGCRGWARADIMIRASDRKPFLLEINTSPGMT 287
>gi|389866060|ref|YP_006368301.1| D-alanine--D-alanine ligase [Modestobacter marinus]
gi|388488264|emb|CCH89837.1| D-alanine--D-alanine ligase [Modestobacter marinus]
Length = 373
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 160/402 (39%), Gaps = 67/402 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR-------NLNAYAISSAQV 131
RV ++ GG SAE IS SA SVL + + V I R + A AI ++
Sbjct: 9 RVAVVFGGRSAEHAISCVSAGSVLAALDPERYEVVPVGITREGGWVLHDGGALAIEGGRL 68
Query: 132 YSNT----------PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGI 181
T PA + Q G L+E VD+VFP +HG GEDG I
Sbjct: 69 PEVTDGTAVSLVGDPAGRGLAVLDPGQAIGRLTE--------VDVVFPVLHGAHGEDGTI 120
Query: 182 QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241
Q +LE +P+VG+G A + DK +S G + QG V + S
Sbjct: 121 QGLLEMSGLPYVGSGVFASAASMDKEFTKKLLSAAG-------IPQGDHVVLRDASGAIC 173
Query: 242 TNK--LDPNSGK-----VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR-VVVE 293
+ LD + + V VKP+RAGSSIG+T V D + + DR VVVE
Sbjct: 174 PDPDVLDEAARERLGLPVFVKPSRAGSSIGITR---VTDWAQFPAAVATAAAVDRKVVVE 230
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 353
+ G ++ G G P LP E+ L R +++ KYL
Sbjct: 231 ASVPGREIECGVLARPGGGL---PEASLPAEIRL--------RPGTEWYDFDAKYL-DDA 278
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
V + P +++E + F + AR+D F S++ G+ W
Sbjct: 279 VEFDVPADLTAEQTAAVQEISRRAFLAMDCRGLARVD---------FFLSTDPATGADRW 329
Query: 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
+ ++N + G S + + G S+ ++ ++ A
Sbjct: 330 ---VVNEVNTMPGFTPISMFPRMWAATGVSYPELVDRLVASA 368
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE G+PY G GV AS MDK T L+ G+ +
Sbjct: 106 VFPVLHGAHGEDGTIQGLLEMSGLPYVGSGVFASAASMDKEFTK---KLLSAAGIPQGDH 162
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
V R P D+ E + + VKP+R G S G+ R+
Sbjct: 163 VVLRDASGAICPDPDVLDEAARERLGLPVFVKPSRAGSSIGITRV 207
>gi|385812976|ref|YP_005849369.1| D-alanine--D-alanine ligase [Lactobacillus helveticus H10]
gi|323465695|gb|ADX69382.1| D-alanine--D-alanine ligase [Lactobacillus helveticus H10]
Length = 360
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 156/389 (40%), Gaps = 53/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VGLI GG S+E +S+ S R++ I + V +I N +A
Sbjct: 6 QVGLIFGGNSSEYEVSIISGRNIYKAIDKEKFDVHPIWI-TNEGYFANEEESFKVLEDPS 64
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ K +L E E+L +D+ FP +HG GEDG +Q + N PFVG
Sbjct: 65 YQVKNPHKVHNISNLIEL-ENLP-EIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVL 122
Query: 199 ACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
A DK + + G +I + F + + N +L V KL + +
Sbjct: 123 AAAVTMDKEFTKILAQRVGVPVADWIAIKRF--EYDDKNNDKLDYEKVAEKLGRD---MF 177
Query: 254 VKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
VKP+ GSS+G VT A +LK+A DD+V+VE + G TA++
Sbjct: 178 VKPSNQGSSVGVSHVTNADEYAAALKEAF-----KYDDKVLVEETVPGTEVETAVL---- 228
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D P+V ++ K + ++Y+ KY P P +I++I
Sbjct: 229 -GND-KPIVAGVGQI---------TNAKGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTI 277
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R A +++ ARID P G ++ T++N + G
Sbjct: 278 RRNARKVYEVTECSGMARIDSMLTPG-----------------GKVVLTEVNALPGFTNI 320
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G ++ ++ +I RF
Sbjct: 321 SMYPKLFEEAGVPYTELITRLIEVGMERF 349
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 136/337 (40%), Gaps = 67/337 (19%)
Query: 622 HSINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
H+I+ I+L + VF VHG +GEDG LQ L P+ G V+A+ MDK T
Sbjct: 74 HNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAVTMDKEFT 133
Query: 681 SLALNH----LAD-LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 735
+ +AD + + D + + L + ++ KL + + VKP+ G
Sbjct: 134 KILAQRVGVPVADWIAIKRFEYDDKNNDKL-------DYEKVAEKL-GRDMFVKPSNQGS 185
Query: 736 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795
S GV+ + A++ Y AL+E
Sbjct: 186 SVGVSHVTNADE---YAAALKEAF------------------------------------ 206
Query: 796 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 855
K D+++ + E+ V+G + + + +T G S + K+
Sbjct: 207 --------KYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQIT-NAKGSFYSYKNKYDD 257
Query: 856 GTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915
+ L P + + E +D ++ + + G +RID+ + G+V++ EVN +
Sbjct: 258 NSTSKLQIP--ADLPQEIIDTIRRNARKVYEVTECSGMARIDSML-TPGGKVVLTEVNAL 314
Query: 916 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
PG T + ++ L E+ + + +++++G ERF
Sbjct: 315 PGFT--NISMYPKLFEEAGVPYTELITRLIEVGMERF 349
>gi|220927741|ref|YP_002504650.1| D-alanyl-alanine synthetase A [Clostridium cellulolyticum H10]
gi|254767725|sp|B8I590.1|DDL_CLOCE RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|219998069|gb|ACL74670.1| D-alanine/D-alanine ligase [Clostridium cellulolyticum H10]
Length = 376
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 128/318 (40%), Gaps = 61/318 (19%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 694
+F +HG GEDGT+Q L E G+PY G GV+ S MDK T + L L
Sbjct: 106 VIFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLV 165
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
N RK+ + I D+ ++ +L VKP+ G S GV + A D VKA
Sbjct: 166 FN----RKQ--VYNRIEDVVAQIEGRLTYPCF-VKPSNAGSSVGVNK---ASDRESLVKA 215
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L I + R ++ E F+ EI GN
Sbjct: 216 -----LNIAAKNDRR--------------ILVEEFINGREI------------ECAVLGN 244
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
V TVG + C D E K+Q G + PA +S E +
Sbjct: 245 DNPVASTVGEVVPC---------------NDFYDYEAKYQVGDSSKVV-IPAPNLSKETV 288
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
+K ++ L G SR+D FV+ + GE+ I E+NT+PG T + ++ L
Sbjct: 289 EKIREYAVRAFKCLDCAGLSRVDFFVHKETGEIYINEINTLPGFT--QISMYPKLWAASG 346
Query: 935 MYPHQFFRKVLDLGSERF 952
+ + K+++L ER+
Sbjct: 347 IPYSELINKLIELAFERY 364
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 163/398 (40%), Gaps = 55/398 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV +I GG S+E +S SA+SV+++I V I ++ + V D
Sbjct: 5 RVAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKS-GQWLKYDGPVEKIGNGD 63
Query: 139 FDF-----KLESLAQ------GFGSLSEFAEHLAANV----DIVFPTIHGRFGEDGGIQE 183
++ +ESL+Q G +++ + + NV D++FP +HG GEDG IQ
Sbjct: 64 WEAIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGTIQG 123
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV-NESELSNWFVT 242
+ E +P+VG G DK + K+G + +V N E +
Sbjct: 124 LFELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVAQIE 183
Query: 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
+L + VKP+ AGSS+GV A +SL KA I + D R++VE F+ G E
Sbjct: 184 GRL---TYPCFVKPSNAGSSVGVNKASDR-ESLVKALNIAAKN-DRRILVEEFIN-GREI 237
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP-PR 361
VL G D +PV EV V D ++Y KY P P
Sbjct: 238 ECAVL----GND-NPVASTVGEV---------VPCND-FYDYEAKYQVGDSSKVVIPAPN 282
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ IRE A F+ L +R+D F ET G I +I
Sbjct: 283 LSKETVEKIREYAVRAFKCLDCAGLSRVD---------FFVHKET-------GEIYINEI 326
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
N + G Q S + + G +S ++ +I A R+
Sbjct: 327 NTLPGFTQISMYPKLWAASGIPYSELINKLIELAFERY 364
>gi|270292368|ref|ZP_06198579.1| D-alanine--D-alanine ligase [Streptococcus sp. M143]
gi|270278347|gb|EFA24193.1| D-alanine--D-alanine ligase [Streptococcus sp. M143]
Length = 347
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 161/390 (41%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V +T + + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAK------ITEVEEKLTYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRRNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKITEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ ++ E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRRNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|383937883|ref|ZP_09991117.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
pseudopneumoniae SK674]
gi|418972863|ref|ZP_13520918.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383350939|gb|EID28777.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383715229|gb|EID71201.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
pseudopneumoniae SK674]
Length = 347
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 172/403 (42%), Gaps = 75/403 (18%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA S++ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESIMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKLPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHL 472
S +G S++ ++ ++ A S+N +HL
Sbjct: 310 WSMYPLLWDNMGISYAELIERLVDLAKE------SFNKREAHL 346
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKLPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYAELIERLVDLAKESF 339
>gi|310829666|ref|YP_003962023.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308741400|gb|ADO39060.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612]
Length = 510
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/400 (22%), Positives = 167/400 (41%), Gaps = 53/400 (13%)
Query: 66 QTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYA 125
Q +E+ + + +G++ GG S E +S SA +V++ I + + I +N + +
Sbjct: 154 QKFKEESIMEKKINLGIVFGGQSGEHEVSRASACNVIEVIDKEKYDITLIGITKNGD-WK 212
Query: 126 ISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
+ + + ++ + + F S F + + +VD+ FP +HG GEDG IQ +
Sbjct: 213 VYTGDYKNIKDGSWEQDTDKIHADF---SIFHDPIIQDVDVFFPVLHGPMGEDGTIQGLF 269
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
E N P+VG G A DK + + G P + + + +
Sbjct: 270 ELMNKPYVGCGVLASAAGMDKVASKMLFESAGIPVGPYVYFKRRDWEKDP------DRII 323
Query: 246 DPNSGK---VVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGG 299
D +G+ V +KP+ GSS+G++ A+ ID + +A D ++VVE FL
Sbjct: 324 DDIAGRGFPVFIKPSNMGSSVGISKAHNREEFIDGVNEAL-----RYDHKIVVEGFLNAR 378
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359
A++ + G E++ G V V K+ ++Y KY Q P
Sbjct: 379 EIECAVLEENG-------------EIKAAIPGEV-VASKE-FYDYEAKYSDNQDSKIVIP 423
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ ++ IRE A F+ + +R+D +F+ +T+ I
Sbjct: 424 AQISDALLEKIREYAIKAFEVIDGSSLSRVD-FFVTRATY---------------NIYIN 467
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTII-GHACSR 458
+IN + G S + +G S++ ++ +I G A R
Sbjct: 468 EINTMPGFTNISMYPKMWENMGVSYAELVEKLIQGAAVKR 507
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 109/283 (38%), Gaps = 60/283 (21%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG +GEDGT+Q L E PY G GV+AS MDKVA+ + G+
Sbjct: 252 FPVLHGPMGEDGTIQGLFELMNKPYVGCGVLASAAGMDKVASKMLFES---AGIPVGPYV 308
Query: 699 VRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
++ D K P I+D ++ + + +KP+ G S G+
Sbjct: 309 YFKRRDWEKDPDRIID---DIAGR--GFPVFIKPSNMGSSVGI----------------- 346
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
S+AH E + E L ++ + + L N+R
Sbjct: 347 -----------SKAHNREEFIDGVNEALRYDHKIVVEGFL-----------------NAR 378
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EI V+ + G + + +P V S + E K+ + P +S L+K
Sbjct: 379 --EIECAVLEENGEIKAAIPGEVVA-SKEFYDYEAKYSDNQDSKIVIPAQ--ISDALLEK 433
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
++ + SR+D FV + I E+NT+PG T
Sbjct: 434 IREYAIKAFEVIDGSSLSRVDFFVTRATYNIYINEINTMPGFT 476
>gi|304396878|ref|ZP_07378758.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
gi|304355674|gb|EFM20041.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
Length = 365
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 168/410 (40%), Gaps = 71/410 (17%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR----------NLNAYAIS 127
LRVG++ GG SAE +SL SA+++L+ I V ID+ N A +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAEN 63
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
A + N A+ D L ++ H + +D++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNHAAE-DVALVPGKTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
++PFVG+ + DK D + + + + V +L V +++ ++ LDP
Sbjct: 123 ASLPFVGSDVLGSAVSMDK-DFTKRLLRDAGLNVAPWL----SVTQAQRAH------LDP 171
Query: 248 NSG------KVVVKPTRAGSSIGVTVAYGVIDSLKK--AKGIILEGIDDRVVVELFLEGG 299
+ + +KP GSS+GV+ +DS+++ A + D +V++E ++ G
Sbjct: 172 EAVIARFGLPLFIKPANQGSSVGVS----KVDSIEEFDAALALAFSFDRKVLIEQGIK-G 226
Query: 300 SEFTAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 357
E VL D C VV+ DA ++Y KY+
Sbjct: 227 REIECAVLGNDAPEASPCGEVVV-----------------HDAFYSYDTKYISENGAQTV 269
Query: 358 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 417
P ++IR+ A F L AR+D + T+ G I+
Sbjct: 270 VPAAIAAETSDAIRDVAIKAFTALECFGMARVDVFL-----------------TDAGEII 312
Query: 418 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
++N + G S + G S+ +++ +I A R ++ S
Sbjct: 313 VNEVNTLPGFTNISMYPKLWQAAGLSYRDLISRLIDLAIERHQQASTLKS 362
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 103/467 (22%), Positives = 169/467 (36%), Gaps = 128/467 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V ++FGG ++E +VSL S N+ L+A + LL ID N D+S+
Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNI---LEAIDKTRFDVVLLG--IDKQGHWRLN----DASN 56
Query: 554 RVVWSL-PYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
++ + P + L H E+V LV G + T
Sbjct: 57 FLLNAENPALIALNHAAEDVA-------------------------LVPGKTQQQIIT-- 89
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
RH+ + ++ +F VHG +GEDG+LQ LL +P+ G V+ S
Sbjct: 90 --------RHNAHPLSQID-----VIFPIVHGTLGEDGSLQGLLRMASLPFVGSDVLGSA 136
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------- 725
MDK K + R L P + + + L +
Sbjct: 137 VSMDK----------------DFTKRLLRDAGLNVAPWLSVTQAQRAHLDPEAVIARFGL 180
Query: 726 -LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784
L +KPA G S GV+++ E+ + AL SF R
Sbjct: 181 PLFIKPANQGSSVGVSKVDSIEE---FDAALALAF------SFDR--------------- 216
Query: 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG 844
+++ + + EI V+G S V V ++
Sbjct: 217 -----------------------KVLIEQGIKGREIECAVLGNDAPEASPCGEVVVHDA- 252
Query: 845 DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN 904
S + K+ G P A ++ E D + AL+ G +R+D F+ D
Sbjct: 253 -FYSYDTKYISENGAQTVVPAA--IAAETSDAIRDVAIKAFTALECFGMARVDVFLT-DA 308
Query: 905 GEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
GE+++ EVNT+PG T + ++ L + + +++DL ER
Sbjct: 309 GEIIVNEVNTLPGFT--NISMYPKLWQAAGLSYRDLISRLIDLAIER 353
>gi|312126949|ref|YP_003991823.1| d-alanine/d-alanine ligase [Caldicellulosiruptor hydrothermalis
108]
gi|311776968|gb|ADQ06454.1| D-alanine/D-alanine ligase [Caldicellulosiruptor hydrothermalis
108]
Length = 364
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 167/398 (41%), Gaps = 67/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L+V ++ GG S E IS+ SA+S++ ++ + + I + +Y+
Sbjct: 4 LKVAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKE------GKWLLYTGKIE 57
Query: 138 DFD-----FKLESLA---QGFGSLSEFAEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEK 187
D D F +E + +L + ++ A ++D+VFP +HG GEDG +Q +LE
Sbjct: 58 DLDSKWTQFSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLEL 117
Query: 188 YNVPFVGTG---SRACR-QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS---NWF 240
N+P+VG G S C +AF K A LE QG V V ++E S ++F
Sbjct: 118 SNIPYVGCGVLSSAICMDKAFAKKLALLEGIPQGHFLV---------VYKNEYSAKKDYF 168
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
+ S V VKP +GSS+G++ A D L D ++++E +
Sbjct: 169 IRRIESEFSYPVFVKPANSGSSVGISKAKDREDLALAIHEAFL--YDTKILIEQAI-NAR 225
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL F P ++P+ RE ++Y KY+ P
Sbjct: 226 EIECAVLGNDDVFVSEPGEIIPS------------RE---FYSYEAKYIDNSS-ELIIPA 269
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R P VI I++ A+ +++ C AR+D +F+ T+ + F +
Sbjct: 270 RLPKEVIEEIKDLAARIYKIFECCGMARVD-FFVDKDTN---------------KVYFNE 313
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+N I G S + G +S ++ +I A +
Sbjct: 314 VNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 134/343 (39%), Gaps = 99/343 (28%)
Query: 632 KENQAT------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLAL 684
K+N+AT VF +HG GEDGT+Q LLE +PY G GV++S CMDK A LAL
Sbjct: 85 KDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGCGVLSSAICMDKAFAKKLAL 144
Query: 685 NHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 734
G L + K+ +RR E P+ VKPA G
Sbjct: 145 LEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVF----------------VKPANSG 188
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 794
S G+++ EDL + I E F+ +
Sbjct: 189 SSVGISKAKDREDLA---------------------------------LAIHEAFLYDTK 215
Query: 795 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------S 848
IL Q+ N EI V+G V V E G+I+ S
Sbjct: 216 ILI-EQAINAR-------------EIECAVLGN--------DDVFVSEPGEIIPSREFYS 253
Query: 849 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
E K+ + + P + + E +++ K I + G +R+D FV+ D +V
Sbjct: 254 YEAKYIDNSSELIIP---ARLPKEVIEEIKDLAARIYKIFECCGMARVDFFVDKDTNKVY 310
Query: 909 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
EVNT+PG T ++ ++ L E + Q K++ L E+
Sbjct: 311 FNEVNTIPGFT--SISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
>gi|381402882|ref|ZP_09927566.1| D-alanine--D-alanine ligase [Pantoea sp. Sc1]
gi|380736081|gb|EIB97144.1| D-alanine--D-alanine ligase [Pantoea sp. Sc1]
Length = 365
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 158/404 (39%), Gaps = 59/404 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR----------NLNAYAIS 127
LRVG++ GG SAE +SL SA+++L+ I V ID+ N A +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAEN 63
Query: 128 SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
+ + N AD D L ++ H + +D++FP +HG GEDG +Q +L
Sbjct: 64 PSLIALNRAAD-DVALVPGHTQQQVITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
++PFVG+ + DK + G P L ++ ++L V +
Sbjct: 123 ASLPFVGSDVLGSAVSMDKDFTKRLLRDAGLKVAP--WLSVTQAQRAQLDAEAVIARF-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKK--AKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ +KP GSS+GV+ +DS + A + D +V++E ++ G E
Sbjct: 179 -GLPLFIKPANQGSSVGVS----KVDSPAEFDAALALAFSFDRKVLIEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C VV+ DA ++Y KY+ P
Sbjct: 233 VLGNDAPEASPCGEVVV-----------------HDAFYSYDTKYISESGAQTVVPAALS 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
++IRE A F L AR+D + T+ G I+ ++N
Sbjct: 276 TETSDAIREVAIKAFTALECFGMARVDVFL-----------------TDGGEIIVNEVNT 318
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ G S + G S+ +++ +I A R + S
Sbjct: 319 LPGFTNISMYPKLWQAAGLSYQDLISRLIDLAIERHQQACTLKS 362
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/466 (21%), Positives = 174/466 (37%), Gaps = 126/466 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V ++FGG ++E +VSL S N+ L+A + LL ID N D+S+
Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNI---LEAIDKTRFDVVLLG--IDKQGHWRLN----DASN 56
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
++ + SL+ + + D A H + QV+
Sbjct: 57 FLLNAENPSLIALNRAAD-----------DVALVPGHTQQQVIT---------------- 89
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
RH+ + ++ +F VHG +GEDG+LQ LL +P+ G V+ S
Sbjct: 90 -------RHNAHPLSQID-----VIFPIVHGTLGEDGSLQGLLRMASLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 725
MDK K + R L P + + ++L +
Sbjct: 138 SMDK----------------DFTKRLLRDAGLKVAPWLSVTQAQRAQLDAEAVIARFGLP 181
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
L +KPA G S GV+++ + P E
Sbjct: 182 LFIKPANQGSSVGVSKV-----------------------------------DSPAEF-- 204
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
D L + S ++ +++ + + EI V+G S V V ++
Sbjct: 205 -------DAALALAFSFDR---KVLIEQGIKGREIECAVLGNDAPEASPCGEVVVHDA-- 252
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
S + K+ +G P A +STE D ++ AL+ G +R+D F+ D G
Sbjct: 253 FYSYDTKYISESGAQTVVPAA--LSTETSDAIREVAIKAFTALECFGMARVDVFLT-DGG 309
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
E+++ EVNT+PG T + ++ L + + +++DL ER
Sbjct: 310 EIIVNEVNTLPGFT--NISMYPKLWQAAGLSYQDLISRLIDLAIER 353
>gi|187479348|ref|YP_787373.1| D-alanine--D-alanine ligase [Bordetella avium 197N]
gi|123513903|sp|Q2KVG4.1|DDL_BORA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|115423935|emb|CAJ50487.1| D-alanine--D-alanine ligase [Bordetella avium 197N]
Length = 317
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 158/392 (40%), Gaps = 80/392 (20%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R +VG++ GG SAER +SL S V + + R +D +L
Sbjct: 4 RFGKVGVLYGGRSAEREVSLMSGAGVHEAL-------RSAGVDAHL-------------- 42
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
FD L+ L +L AA + VF +HGRFGEDG IQ LE N+P+ G+
Sbjct: 43 ---FDTGLQDLT----ALE------AAGFERVFIALHGRFGEDGAIQGALELLNIPYTGS 89
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN-ESELSNWFVTNKLDPNSGKVVV 254
G A A DK + G T P+F E++ ++EL V ++L +++
Sbjct: 90 GVTASALAMDKIMTKRVWLQHGLPT-PAF----EEIDSDTELRR--VPDRLGL---PLIL 139
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP GS++G+T D +++A D+ V+ E F+ G E T +L G
Sbjct: 140 KPPHEGSTVGITKVAACAD-MEQAYAAASH-FDEVVLAEQFVR-GRELTVALLGSGRNAR 196
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PV +++ D ++Y+ KY T Y P P+ V I + A
Sbjct: 197 ALPV--------------IEIVAPDGNYDYQNKYF-TDVTQYFCPADLPVGVAEQIEKIA 241
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
++ LG + R D + L W ++N GM S +
Sbjct: 242 VQAYRALGCEGWGRAD-FILDGQNQ------------PW----LLEMNTSPGMTSHSLVP 284
Query: 435 QQASKVGFSHSNILRTIIGHACSRFPNLASYN 466
A VG S++ + I+ A + A N
Sbjct: 285 MAARAVGMSYAELCVAILADASCKLRAPARAN 316
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 115/292 (39%), Gaps = 74/292 (25%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH-LADLGVLTI 695
VFIA+HG GEDG +Q LE +PYTG GV AS MDK+ T + L H L I
Sbjct: 61 VFIALHGRFGEDGAIQGALELLNIPYTGSGVTASALAMDKIMTKRVWLQHGLPTPAFEEI 120
Query: 696 NKD--VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL-CCAEDLTVYV 752
+ D +RR D L P++ +KP +G + G+ ++ CA+ Y
Sbjct: 121 DSDTELRRVPDRLGLPLI----------------LKPPHEGSTVGITKVAACADMEQAYA 164
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
A + F E+++ E FV
Sbjct: 165 AA----------SHFD-------------EVVLAEQFV---------------------- 179
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
R E+TV ++G G +P + + + K+ P + E
Sbjct: 180 ---RGRELTVALLGS-GRNARALPVIEIVAPDGNYDYQNKYFTDVTQYFCPADLPVGVAE 235
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
++K + AL EG+ R D ++ N + ++E+NT PGMT +++
Sbjct: 236 QIEKIAVQAY---RALGCEGWGRADFILDGQN-QPWLLEMNTSPGMTSHSLV 283
>gi|357419427|ref|YP_004932419.1| D-alanine--D-alanine ligase [Thermovirga lienii DSM 17291]
gi|355396893|gb|AER66322.1| D-alanine/D-alanine ligase [Thermovirga lienii DSM 17291]
Length = 319
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 158/386 (40%), Gaps = 78/386 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++G+I GG S ER +SL S +VL ++ DL V + L+A +S Q
Sbjct: 7 VKIGVIYGGDSPEREVSLASGTAVLKALEELDLKVEPLLVSSALDA--VSKVQ------- 57
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
++ D+ F +HG +GEDG +Q L+ + G+G
Sbjct: 58 -----------------------SSRCDVFFVALHGSWGEDGRLQGALDLLGKKYTGSGH 94
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP---NSGKVVV 254
+C A DK + T P +LQ + L N + KL+ VVV
Sbjct: 95 ESCALAMDKRVSKAIFESCKIPTAPYVVLQ----RDKFLGN--LNQKLEELLCLWQAVVV 148
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRV-VVELFLEGGSEFTAIVLDVGSGF 313
KP+ GS++GVT+A D KGI D+V +VE ++ G E T V +
Sbjct: 149 KPSGCGSTVGVTIAR---DVETICKGIREASQYDQVLLVEKYIP-GREITVTVWEEEGKV 204
Query: 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
+ P+ V++ K+ ++YR KY + Y P P V ++E
Sbjct: 205 EALPI--------------VEIIPKEGFYDYRAKY-TSGITRYQCPADLPDEVGARVKEV 249
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A LG ++R+D +E GT ++N GM TS +
Sbjct: 250 AVASHLALGCRVYSRVDIRL-----------------SEDGTPYVLEVNTAPGMTATSLV 292
Query: 434 FQQASKVGFSHSNILRTIIGHACSRF 459
+ AS +G+S ++ I+ ++ ++
Sbjct: 293 PKAASAMGWSFPELVARIVINSLRKY 318
Score = 46.2 bits (108), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 122/313 (38%), Gaps = 69/313 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F+A+HG GEDG LQ L+ G YTG G + MDK + + T
Sbjct: 65 FVALHGSWGEDGRLQGALDLLGKKYTGSGHESCALAMDKRVSKAIFESCK---IPTAPYV 121
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V +++ L ++ +L C + + VKP+ G + GV A D+ K +
Sbjct: 122 VLQRDKFLGN-----LNQKLEELLCLWQAVVVKPSGCGSTVGVT---IARDVETICKGIR 173
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
E + ++L+ E ++
Sbjct: 174 EA-------------------SQYDQVLLVEKYIPGR----------------------- 191
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
EITV V + G + +L P V + K+ +GI PA + D+
Sbjct: 192 --EITVTVWEEEGKVEAL-PIVEIIPKEGFYDYRAKYT--SGITRYQCPADLP-----DE 241
Query: 877 CKQRIELIANALQLEGFSRIDAFVNV---DNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
R++ +A A L R+ + V++ ++G ++EVNT PGMT +T L+ +A S
Sbjct: 242 VGARVKEVAVASHLALGCRVYSRVDIRLSEDGTPYVLEVNTAPGMT-ATSLVPKAASAMG 300
Query: 934 PMYPHQFFRKVLD 946
+P R V++
Sbjct: 301 WSFPELVARIVIN 313
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITD 548
++ VI+GGD+ ER+VSL SGT V L+ D++V P L++S++D S + ++ D
Sbjct: 8 KIGVIYGGDSPEREVSLASGTAVLKALEEL-DLKVEPLLVSSALDAVSKVQSSRCD 62
>gi|417933635|ref|ZP_12576955.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
bv. 2 str. F0392]
gi|340770205|gb|EGR92720.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
bv. 2 str. F0392]
Length = 347
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P R V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPARISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 129/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ +T + +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDN---KITMDIPARISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|310640274|ref|YP_003945032.1| d-alanine--d-alanine ligase b [Paenibacillus polymyxa SC2]
gi|386039436|ref|YP_005958390.1| D-alanyl-alanine synthetase A [Paenibacillus polymyxa M1]
gi|309245224|gb|ADO54791.1| D-alanine--D-alanine ligase B [Paenibacillus polymyxa SC2]
gi|343095474|emb|CCC83683.1| D-alanylalanine synthetase [Paenibacillus polymyxa M1]
Length = 362
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 161/391 (41%), Gaps = 54/391 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSA 129
L VGL+ GG S E +SL +A +V++ + + +YI + LNA +
Sbjct: 6 LTVGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGTLLNAPLTTVE 65
Query: 130 QV-YSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
Q+ + L++L FG L + E +D++FP +HG FGEDG IQ + E
Sbjct: 66 QLKLEHAEGGTKAALDTL---FGKL--YGEQ---TLDVLFPLLHGTFGEDGTIQGLFEMA 117
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
++P+VG G A DK G V ++ ++ + V N
Sbjct: 118 DMPYVGAGVLASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQT--GHDLVRNIETEL 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
VKP GSS+G++ A + L+KA + L+ D +V+VE +++ E VL
Sbjct: 176 GYPCFVKPANLGSSVGISKASNR-EELEKAVDLALQ-FDLKVIVEEYVD-AREIEVSVL- 231
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G D P+ +P E+ V D ++Y KY Q P V +
Sbjct: 232 ---GND-EPIASVPGEI---------VSSSD-YYDYAAKYTDGQSEML-IPAPLDEEVAD 276
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
IRE A F+ L C +R D + S H IL ++N + G
Sbjct: 277 RIRESALQAFRALEGCGISRADFFVRRSDGH----------------ILINEVNTMPGFT 320
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + G S+ N+L +I A R+
Sbjct: 321 PFSMYPLLWRETGVSYVNLLDRMIALALERY 351
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 108/288 (37%), Gaps = 67/288 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
+F +HG GEDGT+Q L E +PY G GV+AS MDK H L +
Sbjct: 96 LFPLLHGTFGEDGTIQGLFEMADMPYVGAGVLASAAGMDKGVMKKLFEHAGLPQVKYCYF 155
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYV 752
N T H+L ++ + VKPA G S G+++ E+L V
Sbjct: 156 N----------STQWAQTGHDLVRNIETELGYPCFVKPANLGSSVGISKASNREELEKAV 205
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ L++ I E +V+
Sbjct: 206 DLALQFDLKV----------------------IVEEYVDAR------------------- 224
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI V V+G + S+ P V S D K+ G L P P + E
Sbjct: 225 ------EIEVSVLGNDEPIASV-PGEIVS-SSDYYDYAAKYTDGQSEMLIPAP---LDEE 273
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
D+ ++ AL+ G SR D FV +G +LI EVNT+PG TP
Sbjct: 274 VADRIRESALQAFRALEGCGISRADFFVRRSDGHILINEVNTMPGFTP 321
>gi|58336484|ref|YP_193069.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus NCFM]
gi|227903036|ref|ZP_04020841.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796]
gi|81311548|sp|Q5FMN6.1|DDL_LACAC RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|58253801|gb|AAV42038.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus NCFM]
gi|227869210|gb|EEJ76631.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796]
Length = 360
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 155/390 (39%), Gaps = 49/390 (12%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ ++VGLI GG S+E +S+ S ++ I D V +I N +S +
Sbjct: 3 KKIQVGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWI---TNEGYFASEEESFKV 59
Query: 136 PADFDFKLESLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
D +++E+ ++S E +D+ FP +HG GEDG +Q + N PFVG
Sbjct: 60 LEDPSYQVEN-PHKVNNISNIIELKNLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
A DK + + G +I++ F + + N +L+ V KL
Sbjct: 119 DDVLAAAATMDKEFTKILAQRVGVPVADWISIKRF--EYDDKNNDKLNYEKVAEKL---G 173
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ VKP+ GSS+GV + + DD+V+VE + G TA++
Sbjct: 174 HDMFVKPSNQGSSVGVNHVTNAEEYAAALEEAF--KYDDKVLVEETVPGTEVETAVL--- 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ K + + Y KY P P ++++
Sbjct: 229 --GND-KPIVAGVGQI---------TNAKGSFYTYENKYDDNSTSKLQIPADLPQDIVDT 276
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+RE A +++ ARID P G ++ T++N + G
Sbjct: 277 VRENARKVYEITECSGMARIDSMLTPD-----------------GKVVLTEVNALPGFTN 319
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G ++ ++ +I RF
Sbjct: 320 ISMYPKLFEEAGIPYTELITRLIQAGMDRF 349
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 622 HSINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
++I+ I+L + VF VHG +GEDG LQ L P+ G V+A+ MDK T
Sbjct: 74 NNISNIIELKNLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAATMDKEFT 133
Query: 681 SLALNH----LAD-LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 735
+ +AD + + D + + L + ++ KL + VKP+ G
Sbjct: 134 KILAQRVGVPVADWISIKRFEYDDKNNDKLN-------YEKVAEKL-GHDMFVKPSNQGS 185
Query: 736 STGVARLC 743
S GV +
Sbjct: 186 SVGVNHVT 193
>gi|406912874|gb|EKD52396.1| hypothetical protein ACD_62C00036G0009 [uncultured bacterium]
Length = 354
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 154/389 (39%), Gaps = 58/389 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--LNAYAISSAQVYSNTPA 137
+ +ICGG S E +SL SA+SVL + + +D+ Y + ++N P
Sbjct: 6 LAIICGGVSGEHQVSLLSAQSVLKALDRNRFNPVIIGVDKCGVWRRYDEGNWLNFANDPK 65
Query: 138 DF-------DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+F L F + +D VFP IHG FGEDG +Q +LE V
Sbjct: 66 RIALANNGSEFPLNPFPGSFQKMG---------IDAVFPLIHGSFGEDGTLQGLLELVAV 116
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG A DK +S G VP + ++ E +++ + S
Sbjct: 117 PYVGPDVAGSSMAIDKDLTKRILSHAGVNVVPFETFEPQDIKELDVNTLWSR-----FSE 171
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
VKP R GSS+G+ ++LK A L DD+V+VE + VG
Sbjct: 172 GCFVKPARCGSSLGIR-QVKTKETLKPAIEFALR-YDDKVLVEQKI------------VG 217
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
+C VL T G ++ KD ++Y KY+ P V +++
Sbjct: 218 RELEC--AVLGGTPPLASVIG--EIVPKDGFYSYEAKYIDDDGAQLIAPAEVTSAVRDAL 273
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
++ A FQ L L AR+D +FL + G + ++N I G +
Sbjct: 274 QKTAIKTFQMLCLEGMARVD-FFLAND----------------GVLYVNEVNTIPGFTKI 316
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + G ++ ++ ++ RF
Sbjct: 317 SMYPRLLGLSGVPYTELITKLVDLGIGRF 345
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 127/326 (38%), Gaps = 82/326 (25%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGTLQ LLE VPY GP V S +DK T L+H GV +
Sbjct: 92 AVFPLIHGSFGEDGTLQGLLELVAVPYVGPDVAGSSMAIDKDLTKRILSH---AGVNVVP 148
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+ +D+ + + +W + + VKPAR G S G+ ++ E L K
Sbjct: 149 FETFEPQDIKELDVNTLWSRFS-----EGCFVKPARCGSSLGIRQVKTKETL----KPAI 199
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
E LR D++L + +
Sbjct: 200 EFALRY-----------------------------DDKVLVEQKIVGR------------ 218
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
E+ V+G + S++ + K+ S E K+ G L P + +++ D
Sbjct: 219 --ELECAVLGGTPPLASVIGEIVPKDG--FYSYEAKYIDDDGAQLIAP--AEVTSAVRDA 272
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 936
++ L LEG +R+D F+ ++G + + EVNT+PG T + MY
Sbjct: 273 LQKTAIKTFQMLCLEGMARVDFFL-ANDGVLYVNEVNTIPGFTKIS------------MY 319
Query: 937 PH----------QFFRKVLDLGSERF 952
P + K++DLG RF
Sbjct: 320 PRLLGLSGVPYTELITKLVDLGIGRF 345
>gi|418113010|ref|ZP_12750010.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA41538]
gi|419467284|ref|ZP_14007165.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA05248]
gi|419513062|ref|ZP_14052694.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA05578]
gi|419517269|ref|ZP_14056885.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA02506]
gi|421283808|ref|ZP_15734594.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA04216]
gi|353783372|gb|EHD63801.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA41538]
gi|379543031|gb|EHZ08183.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA05248]
gi|379634227|gb|EHZ98792.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA05578]
gi|379639342|gb|EIA03886.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA02506]
gi|395880494|gb|EJG91546.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA04216]
Length = 347
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKVTPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|417849511|ref|ZP_12495431.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK1080]
gi|339456105|gb|EGP68700.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK1080]
Length = 347
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 167/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G + ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEVFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ +++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPDLIERLVDLAKESF 339
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GEV + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEVFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
>gi|119469216|ref|ZP_01612200.1| D-alanine-D-alanine ligase B, affects cell division
[Alteromonadales bacterium TW-7]
gi|119447468|gb|EAW28736.1| D-alanine-D-alanine ligase B, affects cell division
[Alteromonadales bacterium TW-7]
Length = 306
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 147/377 (38%), Gaps = 87/377 (23%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S ++V + +Q N AI+
Sbjct: 10 KVAVMLGGNSAEREVSLKSGQAVFNALQ-------------NCGVDAIA----------- 45
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD + SL + L E NVD VF +HGR GEDG +Q LE N+P+ G+
Sbjct: 46 FDPQNRSLWE----LKEL------NVDRVFIALHGRGGEDGTVQGALEFMNLPYTGSNVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK G T P ++ + F + + KV+VKP+
Sbjct: 96 GSALAMDKIRCKHLFKSAGLSTAPYAVV--------DAKKGFDAHAIMAEFKKVMVKPSH 147
Query: 259 AGSSIGV---TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ T A + D+L A D +V+VE ++ G EFT VL G +
Sbjct: 148 EGSSIGMAQATTAQELEDALINAF-----KFDSQVLVEQWIT-GREFTVTVL----GDEV 197
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV+ + T + ++Y+ KY + YH P ++ +
Sbjct: 198 QPVIEMTT--------------PNGFYDYQAKY-QSNTTQYHCPANLSTHDTQQLQAMSL 242
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F +G + R+D E G ++N + GM + S +
Sbjct: 243 EAFDLVGASGWGRVDAM-----------------QDEQGNFYLLEVNTVPGMTEKSLVPM 285
Query: 436 QASKVGFSHSNILRTII 452
A G S ++ I+
Sbjct: 286 AAKANGASFEQLVVRIL 302
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 128/314 (40%), Gaps = 86/314 (27%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P S+ W +L + N VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+
Sbjct: 48 PQNRSL--W-ELKELNVDRVFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKI 104
Query: 679 ATSLALNHLADLGVLTINK----DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 734
HL L+ D ++ D H + ++ K + VKP+ +G
Sbjct: 105 RCK----HLFKSAGLSTAPYAVVDAKKGFDA---------HAIMAEF--KKVMVKPSHEG 149
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 794
S G+A+ A++ LE+ L+ N+F
Sbjct: 150 SSIGMAQATTAQE-------LEDALI----NAFK-------------------------- 172
Query: 795 ILFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
F SQ + +W+ E TV V+G + P + + +
Sbjct: 173 --FDSQVLVE-----------QWITGREFTVTVLGD-----EVQPVIEMTTPNGFYDYQA 214
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLII 910
K+Q T P S T+ L Q + L A + + G+ R+DA + + G ++
Sbjct: 215 KYQSNTTQYHCPANLSTHDTQQL----QAMSLEAFDLVGASGWGRVDAMQD-EQGNFYLL 269
Query: 911 EVNTVPGMTPSTVL 924
EVNTVPGMT +++
Sbjct: 270 EVNTVPGMTEKSLV 283
>gi|24214759|ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
str. 56601]
gi|386074129|ref|YP_005988446.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
str. IPAV]
gi|417761063|ref|ZP_12409077.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. 2002000624]
gi|417763974|ref|ZP_12411947.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|418667864|ref|ZP_13229269.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
gi|418672733|ref|ZP_13234069.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. 2002000623]
gi|418692393|ref|ZP_13253471.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans str. FPW2026]
gi|418715902|ref|ZP_13275989.1| D-alanine--D-alanine ligase [Leptospira interrogans str. UI 08452]
gi|418726330|ref|ZP_13284941.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. UI 12621]
gi|421137229|ref|ZP_15597316.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Grippotyphosa str. Andaman]
gi|39930898|sp|Q8F4I2.1|DDL_LEPIN RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|24195760|gb|AAN49258.1|AE011378_5 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
str. 56601]
gi|353457918|gb|AER02463.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
str. IPAV]
gi|400353806|gb|EJP05959.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|400357626|gb|EJP13746.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans str. FPW2026]
gi|409943057|gb|EKN88660.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. 2002000624]
gi|409960240|gb|EKO23994.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. UI 12621]
gi|410018443|gb|EKO85281.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Grippotyphosa str. Andaman]
gi|410580421|gb|EKQ48246.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. 2002000623]
gi|410756309|gb|EKR17934.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
gi|410788130|gb|EKR81856.1| D-alanine--D-alanine ligase [Leptospira interrogans str. UI 08452]
gi|456821618|gb|EMF70124.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Canicola str. LT1962]
gi|456970742|gb|EMG11482.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 351
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 733
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 850
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 155/385 (40%), Gaps = 56/385 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-----LNAYAISSAQVYS 133
++ + GG S E IS+ + + + V+ + ++ + Y +S S
Sbjct: 3 KIAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVS 62
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N+P D E + +G +S + + + DIVF +HG GEDG IQ LE +P+
Sbjct: 63 NSP---DLFQEEFQKRYG-VSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYT 118
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW--FVTNKLDPNSGK 251
G+G A A DK A+ + G P F E+++ E N V KL+
Sbjct: 119 GSGVLASAIAMDKTRANQIFLQSGQKVAPFF-----EIDKLEYLNSTDAVITKLETLGFP 173
Query: 252 VVVKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+KP GSS+ V Y + + LK+ +I E D +V+ + FL G E + VL+
Sbjct: 174 QFLKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLT-GIEVSCGVLER 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH--TPPRFPIVVI 367
+ L TE + F++ KY +Q H TP R +
Sbjct: 229 YRDGKFKKIALPATE----------IVPGGEFFDFESKY---KQGGSHEITPARISEQEM 275
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++E A + LG ++R D + H+ + N + GM
Sbjct: 276 KRVQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL------------------ETNTLPGM 317
Query: 428 EQTSFLFQQASKVGFSHSNILRTII 452
+TS + QQA G S + +I
Sbjct: 318 TETSLIPQQAKAAGISMEEVFSDLI 342
>gi|419780778|ref|ZP_14306619.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK100]
gi|383184951|gb|EIC77456.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK100]
Length = 347
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 166/388 (42%), Gaps = 65/388 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRVVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KL--------ESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
+ + +AQ S E A +VFP +HG GEDG +Q LE +P+V
Sbjct: 64 LMTNETIDWDKKIAQ-----SAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYV 114
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKV 252
G + A DK + G VP +++G +V S+++ V KL + V
Sbjct: 115 GCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-SKIAE--VEEKL---TYPV 168
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
KP+ GSS+G++ + + L++A + + D RV+VE A ++VG
Sbjct: 169 FTKPSNMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE------QGVNAREIEVGLL 220
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
+ LP EV KD A ++Y KY+ ++ P + V+ +R
Sbjct: 221 GNYEVKSTLPGEV-----------VKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAVMR 268
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 269 HNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWS 311
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRF 459
+GFS+ ++ ++ A F
Sbjct: 312 MYPLLWDNMGFSYPELIEHLVDLAKESF 339
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 136/341 (39%), Gaps = 67/341 (19%)
Query: 616 DELPMRHSINEWIKLAK----ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
D L +I+ K+A+ E A VF +HG +GEDG++Q LE +PY G +++S
Sbjct: 62 DRLMTNETIDWDKKIAQSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSS 121
Query: 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
MDK+ T L +G+ + + D + + I ++ +LT + KP+
Sbjct: 122 SLAMDKITTKRVLES---VGIAQVPYVAIVEGDDVTSKIAEVEEKLTYP-----VFTKPS 173
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S G+++ E+L +ALE L F +
Sbjct: 174 NMGSSVGISKSENQEELR---QALE---------------------------LAF----Q 199
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
D + Q N EI VG++G + S +P VK+ +
Sbjct: 200 YDSRVLVEQGVNAR-------------EIEVGLLGNY-EVKSTLPGEVVKDVA-FYDYDA 244
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ I + P +S + + + E A+ G SR D F D GE+ + E
Sbjct: 245 KYIDNK-ITMDIPAK--ISDDVVAVMRHNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNE 300
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+NT+PG T + ++ L + + ++DL E F
Sbjct: 301 LNTMPGFTQWS--MYPLLWDNMGFSYPELIEHLVDLAKESF 339
>gi|418110638|ref|ZP_12747657.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA49447]
gi|353781259|gb|EHD61704.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA49447]
Length = 347
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 164/387 (42%), Gaps = 63/387 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQED- 62
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + A + +VFP +HG GEDG +Q LE +P+VG +
Sbjct: 63 RLMTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLRMPYVGCNILSSS 122
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V ++++ V KL + V KP+ G
Sbjct: 123 LAMDKITTKRVLESTGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPSNMG 176
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L++A + + D RV+VE G +
Sbjct: 177 SSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR---- 213
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ +R+
Sbjct: 214 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVVVMRQ 269
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 270 NAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 312
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+ ++ ++ A F
Sbjct: 313 YPLLWDNMGISYPELIERLVDLAKESF 339
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 126/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLRMPYVGCNILSSSLAMDKITTKRVLES---TGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVVVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|417095463|ref|ZP_11958359.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512]
gi|327194156|gb|EGE61024.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512]
Length = 358
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 155/393 (39%), Gaps = 59/393 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+ ++ GG SAE +S+ SA +V+ + + +I R S TP+
Sbjct: 8 LRIAVLFGGRSAEHEVSILSATNVMRALAPEKYDAVPIFISREGQWLLSSFVDGALATPS 67
Query: 138 DFDFKLESLAQGFGSLSEF----AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
++ + G G + H +DI+FP +HG +GEDG +Q + E VP
Sbjct: 68 S-GTEICLVPGGRGRMMAIPTGGTPHDLPGIDILFPVLHGPYGEDGSVQGLAEVARVPLA 126
Query: 194 GTGSRACRQAFDKYDASLEMSKQGF-----ITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
G G A DK A + G +TV + ESEL
Sbjct: 127 GCGILGSAAALDKDIAKRLLRAAGLPVARAVTVRADAAPSLATLESELGL---------- 176
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGS-EFTAI 305
+ +KP R GSS+GV + + ++ + E D ++ E F+ G EF+ +
Sbjct: 177 --PLFIKPARQGSSVGVA----KVHASQEFAPALAEAFRHDHTLLAEEFVAGREIEFSVL 230
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
G F P ++P E +NY KY+ A P P
Sbjct: 231 EDAAGDLFVSRPGEIVPA-------------ENHGFYNYDAKYVDENGAALKVPAELPPN 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
V ++R+ A+ F+ +G AR+D F +S+ ++ L +IN I
Sbjct: 278 VEAAMRDMAAKAFRAVGCDGMARVD---------FFLTSDMRF--------LINEINTIP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G S + + G S++ ++ ++ H +R
Sbjct: 321 GFTDISMYSKAMAASGVSYAEVIDRLVDHGMAR 353
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 115/282 (40%), Gaps = 58/282 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG++Q L E VP G G++ S +DK +A L G L + +
Sbjct: 100 LFPVLHGPYGEDGSVQGLAEVARVPLAGCGILGSAAALDK---DIAKRLLRAAG-LPVAR 155
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V + D + L S+L L +KPAR G S GVA++ +++ + AL E
Sbjct: 156 AVTVRADAAPS-----LATLESELGLP-LFIKPARQGSSVGVAKVHASQE---FAPALAE 206
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+F H L+ E FV EI FS + D + SR
Sbjct: 207 --------AFRHDH-----------TLLAEEFVAGREIEFSVLE-DAAGDLFV----SRP 242
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI +P+ E+ + + K+ G L P + EA
Sbjct: 243 GEI--------------VPA----ENHGFYNYDAKYVDENGAALKVPAELPPNVEA--AM 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ A+ +G +R+D F+ D LI E+NT+PG T
Sbjct: 283 RDMAAKAFRAVGCDGMARVDFFLTSDM-RFLINEINTIPGFT 323
>gi|154486582|ref|ZP_02027989.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis
L2-32]
gi|154084445|gb|EDN83490.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
adolescentis L2-32]
Length = 378
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 157/398 (39%), Gaps = 53/398 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----------LNAYAISS 128
R+ ++ GG + E IS SA S L + D I ++ L
Sbjct: 5 RIVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEG 64
Query: 129 AQVYSNTPADFDFKLE-SLAQ-GF------GSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
TP D LE +L Q GF G+L+ F +VD VFP +HG +GEDG
Sbjct: 65 LPTVEKTPGAKDVVLEVALGQDGFFAREDDGTLTPFG-----HVDAVFPVLHGPYGEDGT 119
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE-SEL-SN 238
IQ + E VP+VG G A DK+ + ++ G P L ++ SE +N
Sbjct: 120 IQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDKASEFKAN 179
Query: 239 WFVTNKLDPNSG---KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD-RVVVEL 294
+G + VKP+RAGSS GVT D+ + A + D R++VE
Sbjct: 180 ADAIMAQVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASHHDWRILVEQ 239
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
++ E VL +G P P E+ L + D D +++ KY+
Sbjct: 240 GID-AREIECAVLCPKAGE--APQASWPGEIVLDKRAEGD----DQFYDFDSKYMDAAAS 292
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P P +N +RE A F + +R+D + T+ G
Sbjct: 293 HVEVPANLPEETLNLVRETAKKAFVAVDGAGLSRVDTFV-----------------TKDG 335
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
++ +IN + G S + G +++++ +I
Sbjct: 336 KVMVNEINTMPGFTSISMYPKAWEATGVRYTDLITMLI 373
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q L E GVPY G GV+AS CMDK T + L I
Sbjct: 105 AVFPVLHGPYGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGIT 164
Query: 697 KDVRR--KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
D R K K I +++ L VKP+R G S GV ++
Sbjct: 165 LDARSFDKASEFKANADAIMAQVSEAGLQYPLFVKPSRAGSSFGVTKV 212
>gi|436667597|ref|ZP_20517384.1| D-alanyl-alanine synthetase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|435014170|gb|ELM04748.1| D-alanyl-alanine synthetase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
Length = 354
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 158/391 (40%), Gaps = 65/391 (16%)
Query: 85 GGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SNTPADFDF 141
GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++ PA
Sbjct: 1 GGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNADDPAHIAL 59
Query: 142 KLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ SLAQ G +H N VD++FP +HG GEDG +Q +L N+
Sbjct: 60 RPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 115
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
PFVG+ + DK A + G P L + N S V ++L
Sbjct: 116 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVESRL---GL 170
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVL-- 307
+ VKP GSS+GV+ V + + + + L D +VVVE ++ G E VL
Sbjct: 171 PLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREIECAVLGN 226
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
D C +VL + Y KY+ P + P V
Sbjct: 227 DNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPAQLPSGVN 269
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+ IR A +Q LG AR+D VF +++ + ++ +IN + G
Sbjct: 270 DKIRAIAIQAYQTLGCAGMARVD---------VFLTADNE--------VVINEINTLPGF 312
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G +++++ +I A R
Sbjct: 313 TNISMYPKLWQASGLGYTDLISRLIELALER 343
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 92 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DIAKRLLRDAGLNIAPF 148
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 149 ITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 189
>gi|422475506|ref|ZP_16551953.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
gi|313833066|gb|EFS70780.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
Length = 365
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 164/401 (40%), Gaps = 64/401 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ V +I GG S+E IS SA +V+ I + +++ IS ++ A
Sbjct: 4 IHVAVIFGGMSSEHSISCLSAANVVAAIDAERF---------DVSGVGISPEGIWVRYGA 54
Query: 138 DFDFKLESLAQ---------GFGSLSEFAE-----HLAANVD---IVFPTIHGRFGEDGG 180
D L Q S+ + E NVD +VFP +HG FGEDG
Sbjct: 55 DEILALPGTGQLPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGT 114
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE V +VG G A DK+ + +S+ G + P +++ E E +
Sbjct: 115 IQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRKAVLK 174
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
++L+ V VKP R GSSIG++ + L+ A + E D +V++E + G
Sbjct: 175 AVSRLEY---PVFVKPARGGSSIGISRVTSP-EHLETAIEMAREH-DSKVLIEQGIR-GR 228
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTP 359
E V+D G P +P G + V + D +++ KYL +Q A
Sbjct: 229 EIECSVIDGRHG--AAPRASVP--------GEIVVHDPDGFYDFEAKYLSGEQKASVQAH 278
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+++ A FQ LG ARID + P G +
Sbjct: 279 ANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-----------------GAVYVN 321
Query: 420 DINLISGMEQTSF--LFQQASKVGFSHSNILRTIIGHACSR 458
+ N + G ++S L QAS G +++ I+ +I A R
Sbjct: 322 EPNTMPGFTRSSGFPLMWQAS--GMTYAQIVSELIELALER 360
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 136/331 (41%), Gaps = 82/331 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 695
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 696 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+D +ED +LK S+L+ VKPAR G S G++R+ E L +
Sbjct: 160 VRDHEWREDRKAVLKA---------VSRLEYPVF-VKPARGGSSIGISRVTSPEHLETAI 209
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ +R H +++ +
Sbjct: 210 E-------------MAREHD----------------------------------SKVLIE 222
Query: 813 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 870 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 922
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 923 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
>gi|307705390|ref|ZP_07642249.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597]
gi|307621053|gb|EFO00131.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597]
Length = 347
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFGSL---SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKQVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ +++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPDLIERLVDLAKESF 339
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
>gi|159040582|ref|YP_001539835.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
gi|157919417|gb|ABW00845.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
Length = 327
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 155/383 (40%), Gaps = 74/383 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRV ++ GG S ER +SL S R VLD + R ++ L
Sbjct: 15 LRVLVLAGGLSYERDVSLRSGRRVLDAL-------RAVGVEAELR--------------- 52
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D D L +A D V +HG GEDG ++ VL+ NVP+VG +
Sbjct: 53 DADVAL------------LPSLVADPPDAVVIALHGATGEDGSLRGVLDLCNVPYVGCDA 100
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKP 256
R+ R A+DK A + + G T P ++ + SEL V +++ G ++VKP
Sbjct: 101 RSSRLAWDKPSAKAVLREAGIPT-PDWVALPHD-RFSELGAVAVLDRIVDRLGLPLMVKP 158
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGII-LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
+ GS +G V V D ++ D +VE +L G++ V+D+G G
Sbjct: 159 AQGGSGLGAAV---VRDGPALPAAMVGCFAYDSTALVERYLP-GTDVAVSVIDLGEGPQA 214
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P +V++ ++ +++Y +Y + +HTP R V ++ A
Sbjct: 215 LP--------------AVEIVPRNGVYDYAARYT-AGRTTWHTPARLDTEVAEAVATVAV 259
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
LGL D +R+D + + + +N+ GM +TS L
Sbjct: 260 AAHTALGLRDLSRVD--------LIVDADHQPH---------VLGVNVAPGMTETSLLPL 302
Query: 436 QASKVGFSHSNILRTIIGHACSR 458
A ++ T++ A +R
Sbjct: 303 AAQAASLDFGRMIGTLVSRAVAR 325
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L + V IA+HG GEDG+L+ +L+ VPY G +S+ DK + L +
Sbjct: 62 LVADPPDAVVIALHGATGEDGSLRGVLDLCNVPYVGCDARSSRLAWDKPSAKAVLR---E 118
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 740
G+ T + + + V + + +L L VKPA+ G G A
Sbjct: 119 AGIPTPDWVALPHDRFSELGAVAVLDRIVDRLGLP-LMVKPAQGGSGLGAA 168
>gi|300791157|ref|YP_003771448.1| D-alanine--D-alanine ligase [Amycolatopsis mediterranei U32]
gi|384154703|ref|YP_005537519.1| D-alanine--D-alanine ligase [Amycolatopsis mediterranei S699]
gi|399543034|ref|YP_006555696.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei S699]
gi|299800671|gb|ADJ51046.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
gi|340532857|gb|AEK48062.1| D-alanine--D-alanine ligase [Amycolatopsis mediterranei S699]
gi|398323804|gb|AFO82751.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei S699]
Length = 314
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 125/295 (42%), Gaps = 38/295 (12%)
Query: 165 DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF 224
D V +HG GE+G +Q VLE VPFVGTGS+ CR+A+DK A + GF+T
Sbjct: 57 DAVVVALHGGEGENGSVQTVLEMLGVPFVGTGSQGCRRAWDKPTAKALVQNAGFVTPGWV 116
Query: 225 LLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283
+L S E L V + + G +++KP + GS++G V + G
Sbjct: 117 VLPHSTFRE--LGAQAVLDAMVETLGLPLILKPDQGGSALGTQVVREAAELPAAMVGCFA 174
Query: 284 EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFN 343
G D V+ E F++G E V++ G + P +V++ + +++
Sbjct: 175 YG--DTVLAERFVDG-VEVAVTVIEGEDGPEALP--------------AVEIVPESGVYD 217
Query: 344 YRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSS 403
Y +Y + TP R ++ E A + LGL D +R D +
Sbjct: 218 YTARYT-AGLTDFFTPARLDDAAAKAVAELAVAAHRVLGLRDISRTDAVVMAD------- 269
Query: 404 SETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
GT+ F ++N G+ +TS + G S + +IG A SR
Sbjct: 270 ----------GTVHFLEVNPSPGLTETSTVPMAIEAAGKSLGAVFGELIGRAISR 314
Score = 43.5 bits (101), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 624 INEWI-------KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 676
I EW +L + V +A+HGG GE+G++Q++LE GVP+ G G + D
Sbjct: 38 IEEWDTDAGLLERLRTQRPDAVVVALHGGEGENGSVQTVLEMLGVPFVGTGSQGCRRAWD 97
Query: 677 K 677
K
Sbjct: 98 K 98
>gi|257457275|ref|ZP_05622446.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
gi|257445197|gb|EEV20269.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
Length = 367
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 157/393 (39%), Gaps = 48/393 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA---QVYSN 134
+ + +I GG S E +SL SA V+ I G + V I +N Y S+ + +
Sbjct: 1 MNIAIIYGGRSGEHEVSLVSASFVVRAI-GSEHTVYLIGITKNGEWYLQPSSLLGHIRKD 59
Query: 135 TPADFDFKLESLAQ-----GFGS---LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
T A K + A+ G G+ LS +AA D+VFP +HG FGEDG IQ + E
Sbjct: 60 TSAVLTIKCDKAARVAVIPGGGTAAGLSVNGTPIAA--DVVFPVLHGSFGEDGTIQGLFE 117
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
++P+VG G A A DK + + + VP ++ + + + F+ +
Sbjct: 118 MADLPYVGGGVLASSAAMDKEKSKIIWQHEHLPIVPFLCVRKFQWDNPKEREGFILHAEK 177
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP R GSS+G A + L+K + L D +V++E + E V
Sbjct: 178 ELEYPLFVKPCRVGSSVGAGKASNRTELLQKMEEAFL--WDSKVLIEACI-AAREIECSV 234
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
+G D + VV P E+ + ++Y KY+ P
Sbjct: 235 ----TGNDEY-VVYTPGEIIPSHE----------FYDYDAKYIDPDGAQLKIPADIDDEQ 279
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
IR A ++ L L AR+D F +TK TI ++N I G
Sbjct: 280 RREIRSIAGKAYRALDLTGLARVD---------FFIDKKTK-------TIYLNEVNTIPG 323
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + G + ++ + A RF
Sbjct: 324 FTAISMFPKMCEASGMPYRELIMHLFDLAIERF 356
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 124/322 (38%), Gaps = 68/322 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN--HLADLGVLT 694
VF +HG GEDGT+Q L E +PY G GV+AS MDK + + HL + L
Sbjct: 97 VVFPVLHGSFGEDGTIQGLFEMADLPYVGGGVLASSAAMDKEKSKIIWQHEHLPIVPFLC 156
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ K + I+ EL L VKP R G S G + A + T ++
Sbjct: 157 VRKFQWDNPKEREGFILHAEKELEY-----PLFVKPCRVGSSVGAGK---ASNRTELLQK 208
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+EE L ++LI E + EI S GN
Sbjct: 209 MEEAFLW------------------DSKVLI-EACIAAREIECSVT------------GN 237
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
+V T G ++P S + + K+ G L P +
Sbjct: 238 DEYVVYTPG---------EIIP------SHEFYDYDAKYIDPDGAQLKIP------ADID 276
Query: 875 DKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
D+ ++ I IA AL L G +R+D F++ + + EVNT+PG T + + +
Sbjct: 277 DEQRREIRSIAGKAYRALDLTGLARVDFFIDKKTKTIYLNEVNTIPGFT--AISMFPKMC 334
Query: 931 EQPPMYPHQFFRKVLDLGSERF 952
E M + + DL ERF
Sbjct: 335 EASGMPYRELIMHLFDLAIERF 356
>gi|392530131|ref|ZP_10277268.1| D-alanine--D-alanine ligase [Carnobacterium maltaromaticum ATCC
35586]
Length = 363
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 162/405 (40%), Gaps = 73/405 (18%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ + VG++ GG S E +SL SA+++L+ + D V + +SN
Sbjct: 3 KKINVGVVFGGKSTEYHVSLQSAKNILESLDRDKYSVHLF---------------AFSNE 47
Query: 136 PADFDF-KLESLAQGFGS--------------LSEFAEHLAANVDIVFPTIHGRFGEDGG 180
+F + E L G G +S+ ++ A +D+ FP +HG GEDG
Sbjct: 48 GKLLNFDESEQLLIGDGETVNNHGNETTLSHLISQPFDNQANEIDVYFPIVHGNLGEDGS 107
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ N PFVG+ + DK + ++ GF T S ++ E+ + +S
Sbjct: 108 IQGFFRLLNKPFVGSSVLSSALCMDKDFSKQVLNYNGFKTAKSITVKTGEIAPNLVSQ-- 165
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGG 299
V N+L V +KP GSS+GV+ A +D + KG+I D ++++E L
Sbjct: 166 VENEL---GFPVFIKPANQGSSVGVSRA---VDQISFKKGLIEAFKYDSKIIIEEEL--- 216
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ-GSVDVREKDAIFNYRRKYLPTQQVAYHT 358
+G +C +L E L GS+ E + ++Y KYL
Sbjct: 217 ---------IGKEVEC---AVLGNENPLASNLGSISTDESN-FYSYEEKYLDESGAVLEI 263
Query: 359 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418
P + I++ A ++ L ARID +FL + ++
Sbjct: 264 PAKISEESTLKIKKLALAAYKLLECKGLARID-FFLTNQEEIY----------------I 306
Query: 419 TDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463
++N + G S Q G S+ ++ +I A F A
Sbjct: 307 NEVNTLPGFTNISMYPQLWQASGISYGGLVERLIQLALEEFAKEA 351
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 119/294 (40%), Gaps = 69/294 (23%)
Query: 633 ENQAT----VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+NQA F VHG +GEDG++Q P+ G V++S CMDK + LN+
Sbjct: 85 DNQANEIDVYFPIVHGNLGEDGSIQGFFRLLNKPFVGSSVLSSALCMDKDFSKQVLNY-- 142
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCA 745
N K +KT +I L S+++ + + +KPA G S GV+R
Sbjct: 143 -------NGFKTAKSITVKTG--EIAPNLVSQVENELGFPVFIKPANQGSSVGVSRAV-- 191
Query: 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
+ S G+IE +I+I E +
Sbjct: 192 -------------------DQISFKKGLIEAFKYDSKIIIEEELIGK------------- 219
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
E+ V+G + S + S++ ES + S EEK+ +G L P
Sbjct: 220 -------------EVECAVLGNENPLASNLGSISTDES-NFYSYEEKYLDESGAVLEIPA 265
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+S E+ K K+ L+ +G +RID F+ + E+ I EVNT+PG T
Sbjct: 266 K--ISEESTLKIKKLALAAYKLLECKGLARIDFFL-TNQEEIYINEVNTLPGFT 316
>gi|225859426|ref|YP_002740936.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae 70585]
gi|225721700|gb|ACO17554.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae 70585]
Length = 347
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 168/395 (42%), Gaps = 79/395 (20%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSA-----QVYS 133
L+ GG SAER +S+ SA SV+ + D +V+ ++I ++ + S A ++ +
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFIVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D+D K+ + S E A +VFP +HG GEDG +Q LE +P+V
Sbjct: 67 NETIDWDKKV--------APSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYV 114
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKV 252
G + A DK + G VP +++G +V ++++ V KL + V
Sbjct: 115 GCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---AYPV 168
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
KP+ GSS+G++ + + L++A + D RV+VE G
Sbjct: 169 FTKPSNMGSSVGISKSENQ-EELRQALKLAFR-YDSRVLVE-----------------QG 209
Query: 313 FDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPI 364
+ E+E+ G+ DV+ KD A ++Y KY+ +V P +
Sbjct: 210 VNAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKVTMDIPAKISD 261
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V+ +R+ A F+ +G +R D ++ T+ G I ++N +
Sbjct: 262 DVVAVMRQNAEAAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTM 304
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G Q S +G S+ ++ ++ A F
Sbjct: 305 PGFTQWSMYPLLWENMGISYPELIERLVDLAKESF 339
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKL-----AYPVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F D + Q N
Sbjct: 195 K------------------------------LAF----RYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + +++ PA I S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDI---PAKI-SDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L E
Sbjct: 263 VVAVMRQNAEAAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWEN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|334338433|ref|YP_004543585.1| D-alanine--D-alanine ligase [Isoptericola variabilis 225]
gi|334108801|gb|AEG45691.1| D-alanine--D-alanine ligase [Isoptericola variabilis 225]
Length = 321
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 156/392 (39%), Gaps = 83/392 (21%)
Query: 71 EARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ 130
++ G R+ V ++ GG S ER +SL S R V + ++ L V+ + +D +L A+
Sbjct: 3 DSSGRRLGPVVVLAGGLSHERDVSLRSGRRVAEALRAAGLEVQLHDVDADLLAF------ 56
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
L E +V+P +HG GEDG I++VL+ +
Sbjct: 57 ----------------------LRE------TRTAVVWPLLHGASGEDGSIRDVLDLVGL 88
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKL 245
P+VG+G R R ++K A + G ++T+P L + +L V + +
Sbjct: 89 PYVGSGPRESRAVWNKPVAKAALLAAGIDTPAYVTLPQALFR-------DLGAQAVLDAV 141
Query: 246 DPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
G +VVKP + GS++GVT + + G D ++E ++ G E
Sbjct: 142 VERLGLPLVVKPVQGGSALGVTRVETAAEFPRAMVNCFAYG--DTALIERAID-GIELAV 198
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VLD G + P V + TE ++Y +Y P V Y P R
Sbjct: 199 SVLDGPDGPEALPAVEIVTE---------------GAYDYDARYNPG-PVEYFAPARLTP 242
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ + A + LGL +R D LP+ G +IN+
Sbjct: 243 DQAAHVADVAVRAHRALGLRHLSRTD-MILPAD----------------GPASVLEINVA 285
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 456
GM +TS L Q + G + R ++ HA
Sbjct: 286 PGMTETSLLPQAVAAAGLELPVVYRQLVEHAV 317
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--NHL 687
L + A V+ +HG GEDG+++ +L+ G+PY G G S+ +K AL +
Sbjct: 57 LRETRTAVVWPLLHGASGEDGSIRDVLDLVGLPYVGSGPRESRAVWNKPVAKAALLAAGI 116
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
+T+ + + R DL ++D + +L L VKP + G + GV R+ A +
Sbjct: 117 DTPAYVTLPQALFR--DLGAQAVLD---AVVERLGLP-LVVKPVQGGSALGVTRVETAAE 170
Query: 748 LTVYVKALEEC 758
+ +A+ C
Sbjct: 171 ---FPRAMVNC 178
>gi|422345271|ref|ZP_16426185.1| D-alanine-D-alanine ligase B [Clostridium perfringens WAL-14572]
gi|373227996|gb|EHP50306.1| D-alanine-D-alanine ligase B [Clostridium perfringens WAL-14572]
Length = 302
Score = 83.6 bits (205), Expect = 5e-13, Method: Composition-based stats.
Identities = 87/377 (23%), Positives = 154/377 (40%), Gaps = 86/377 (22%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
++VG+I GG S+ER +SL S S+ +HI + Y +S ++ N
Sbjct: 1 MKVGIIMGGISSEREVSLASGESIFNHIDKEK--------------YEVS--KIIINNKR 44
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D K++ L D +HG+FGEDG +Q +L+ ++P+ G G+
Sbjct: 45 DILEKVKGL------------------DFALLALHGKFGEDGTVQALLDIMDIPYSGCGA 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ DK + + + T ++ E E+ +K++ V VKP
Sbjct: 87 LSSSLCMDKNLSKKVLKAENIRTAKWITVKSIE----EID----YDKIEEIGYPVFVKPN 138
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSS+ Y D K ++EG+ D+ V++E F++ G E T + + +
Sbjct: 139 NGGSSVATFKVYKKED----IKNAVMEGLKYDEEVIIESFIK-GREITCPIFNE----EL 189
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P+ ++++ K ++Y++KY A H P + + + ++E A
Sbjct: 190 FPI--------------LEIKSKADFYDYKQKY--AANGAEHLPVQLEKSLYDEVKEMAL 233
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ L +AR+D +E G ++N + GM TS Q
Sbjct: 234 KTFEVLKCEVYARVDMII-----------------SEEGVPYILEVNTLPGMTATSLFPQ 276
Query: 436 QASKVGFSHSNILRTII 452
A G S+S + II
Sbjct: 277 SAESRGISYSKFIDLII 293
Score = 59.3 bits (142), Expect = 9e-06, Method: Composition-based stats.
Identities = 68/292 (23%), Positives = 117/292 (40%), Gaps = 68/292 (23%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+A+HG GEDGT+Q+LL+ +PY+G G ++S CMDK + L ++
Sbjct: 57 LLALHGKFGEDGTVQALLDIMDIPYSGCGALSSSLCMDKNLSKKVLK----------AEN 106
Query: 699 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
+R + + I +I ++ ++ VKP G S ++ ED+ A+ E
Sbjct: 107 IRTAKWITVKSIEEIDYDKIEEIGYPVF-VKPNNGGSSVATFKVYKKEDIK---NAVMEG 162
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
L E +I E F+ KG
Sbjct: 163 L-------------------KYDEEVIIESFI---------------------KGR---- 178
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
EIT + + L P + +K D ++K+ +L P + D+ K
Sbjct: 179 EITCPIFNE-----ELFPILEIKSKADFYDYKQKYAANGAEHL---PVQ-LEKSLYDEVK 229
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
+ L+ E ++R+D ++ + G I+EVNT+PGMT +++ A S
Sbjct: 230 EMALKTFEVLKCEVYARVDMIIS-EEGVPYILEVNTLPGMTATSLFPQSAES 280
>gi|238764550|ref|ZP_04625497.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
gi|238697252|gb|EEP90022.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
Length = 359
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 162/388 (41%), Gaps = 53/388 (13%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SNTPA- 137
+I GG SAE +SL SA++++D I + V ID+ + I+ A Y + PA
Sbjct: 1 MIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQ-GKWHINDASSYLLNAEHPAL 59
Query: 138 ---DFDFKLESLAQGFGSLSEFAEHLAA---NVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
+ K +L G S A AA +D++FP +HG GEDG +Q +L N+P
Sbjct: 60 ISLNHSNKNVALILGQESQQLIATDNAAALAQLDVIFPIVHGTLGEDGSLQGLLRMANIP 119
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
FVG+G + DK D + + + + + F+ + N+ +T KL
Sbjct: 120 FVGSGVVGSAVSMDK-DITKRLLRDAGLNIAPFITL-TRGNKDSYCFEKITEKLGL---P 174
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ +KP GSS+GV+ V ++ + + + L D +V+VE +AI VG
Sbjct: 175 LFIKPANQGSSVGVS---KVRNAAEYEQAVALAFDFDHKVLVE---------SAI---VG 219
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
+C V+ + G V + D ++Y KY+ P ++I
Sbjct: 220 REIEC--AVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAQVIIPAAIDSAASDNI 275
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R A F+ L C AR+D FL HV + +IN + G
Sbjct: 276 RTVALATFRALECCGMARVD-VFLTPDNHV----------------IINEINTLPGFTNI 318
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G + ++ T+I A R
Sbjct: 319 SMYPKLWRATGVGSTELITTLIELALER 346
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 115/282 (40%), Gaps = 60/282 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L A L +
Sbjct: 95 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVVGSAVSMDKDITKRLLRD-AGLNIAPFIT 153
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R +D + ++T KL L +KPA G S GV+++ A + Y +A+
Sbjct: 154 LTRGNKDSY------CFEKITEKLGLP-LFIKPANQGSSVGVSKVRNAAE---YEQAVAL 203
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+F H ++L+ V R
Sbjct: 204 --------AFDFDH----------KVLVESAIV------------------------GRE 221
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
+E V+G SL V + S + S + K+ TG + P A + + A D
Sbjct: 222 IE--CAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAQVIIPAA--IDSAASDNI 275
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 276 RTVALATFRALECCGMARVDVFLTPDN-HVIINEINTLPGFT 316
>gi|257054969|ref|YP_003132801.1| D-alanyl-alanine synthetase A [Saccharomonospora viridis DSM 43017]
gi|256584841|gb|ACU95974.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
Length = 365
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 162/409 (39%), Gaps = 70/409 (17%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R RV ++ GG S E IS SA S++ ++ D V I + + + + N
Sbjct: 4 RKTRVAVVFGGRSTEHTISCVSAGSIMANLDPDRFEVVPIGITQE-GGWVLGT-----ND 57
Query: 136 PADFDFKLESL----------------AQGFGSLS--EFAEHLAANVDIVFPTIHGRFGE 177
P K L G SL+ E AE L+ VD+VFP +HG FGE
Sbjct: 58 PEQLRIKGRELPVVEHGKTLVLAGDPTTGGVLSLTAGEPAEVLS-GVDVVFPALHGAFGE 116
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF-ITVPSFLLQGSEVNESEL 236
DG IQ +LE ++P+VG+G A A DK A ++ +G + + + +G + +E
Sbjct: 117 DGTIQGLLELADIPYVGSGVFASAAAMDKEYAKKLLAAEGLEVGRYAVVRRGQDTLPAEE 176
Query: 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII-LEGIDDRVVVELF 295
V VKP RAGSSIG++ V D + I D +V+VE
Sbjct: 177 RERL--------GLPVFVKPARAGSSIGISR---VTDWSQLDAAIAHARQTDPKVLVE-- 223
Query: 296 LEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDV--REKDAIFNYRRKYLPTQQ 353
VG +C + VE F + V + DA +++ KYL +
Sbjct: 224 ----------AETVGREVECGVLEFADGRVEASFPSEIRVLSDDADAWYDFETKYL-GED 272
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
P + + +R+ A F L AR+D + P
Sbjct: 273 AELDIPAKLDDTITERLRDMAVRAFTALECQGLARVDFFVGPD----------------- 315
Query: 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
GT+ ++N + G TS + G + +L T++ A +R L
Sbjct: 316 GTLTVNEVNTMPGFTPTSAYPKMWEVTGIDYPTLLTTLVETALARGTGL 364
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 97/251 (38%), Gaps = 58/251 (23%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V V+FGG ++E +S +S ++ NL + EV P I G DP+
Sbjct: 8 VAVVFGGRSTEHTISCVSAGSIMANLDP-DRFEVVPI----GITQEGGWVLGTNDPEQLR 62
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
LP V+ H VLA +P S + L +G D
Sbjct: 63 IKGRELP---VVEHGKTLVLAG-----DPTTGGVLSLTAGEPAEVL----------SGVD 104
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ VF A+HG GEDGT+Q LLE +PY G GV AS
Sbjct: 105 V-----------------------VFPALHGAFGEDGTIQGLLELADIPYVGSGVFASAA 141
Query: 674 CMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
MDK A L ++G + VRR +D L E +L VKPAR
Sbjct: 142 AMDKEYAKKLLAAEGLEVGRYAV---VRRGQDTLPA-------EERERLGLPVF-VKPAR 190
Query: 733 DGCSTGVARLC 743
G S G++R+
Sbjct: 191 AGSSIGISRVT 201
>gi|419489255|ref|ZP_14029004.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44386]
gi|379586797|gb|EHZ51647.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44386]
Length = 347
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 164/387 (42%), Gaps = 63/387 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQED- 62
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + A + +VFP +HG GEDG +Q LE +P+VG +
Sbjct: 63 RLMTNATIDWDKKVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSS 122
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V ++++ V KL + V KP+ G
Sbjct: 123 LAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPSNMG 176
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L++A + + D RV+VE G +
Sbjct: 177 SSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR---- 213
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ +R+
Sbjct: 214 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVVVMRQ 269
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 270 NAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 312
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+ ++ ++ A F
Sbjct: 313 YPLLWDNMGISYPELIERLVDLAKESF 339
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVVVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|419433947|ref|ZP_13974065.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA40183]
gi|379576948|gb|EHZ41872.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA40183]
Length = 347
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 164/387 (42%), Gaps = 63/387 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQED- 62
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + A + +VFP +HG GEDG +Q LE +P+VG +
Sbjct: 63 RLMTNATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSS 122
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V ++++ V KL + V KP+ G
Sbjct: 123 LAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPSNMG 176
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L++A + + D RV+VE G +
Sbjct: 177 SSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR---- 213
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ +R+
Sbjct: 214 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAVMRQ 269
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 270 NAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 312
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+ ++ ++ A F
Sbjct: 313 YPLLWDNMGISYPELIERLVELAKESF 339
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 112/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 308
>gi|228998192|ref|ZP_04157790.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
gi|228761584|gb|EEM10532.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
Length = 304
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 149/378 (39%), Gaps = 89/378 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG+I GG S+E+ +SL + ++ H+ Y P
Sbjct: 1 MRVGVIMGGVSSEKQVSLMTGEEMIAHLDKSK----------------------YEVVPI 38
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ K E + + N+DI +HG +GEDG IQ LE VP+ G+
Sbjct: 39 KLNDKKELVEK------------VRNLDIALLALHGEYGEDGTIQGTLETLGVPYTGSVM 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ DK + S +M + I P + + S E +L +++D +VVKP
Sbjct: 87 LSSGICMDK-NMSKKMIRYEDIQTPDW-IHLSNTEELQL------DEIDKMGYPLVVKPN 138
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314
GSS+GV + Y DSL + LE + D +V+E +++ G E T +LD G
Sbjct: 139 SGGSSVGVKIVYDK-DSLLSS----LEDVFKWDSEIVIEKYIK-GEEITCSILD-GK--- 188
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
LLP + ++ F+Y KY + P + E A
Sbjct: 189 -----LLPI---------ISIQHTAEFFDYHAKYDDIATI--EEVVELPATTYERVAEAA 232
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
++ L +AR+D + E Y ++N + GM + S L
Sbjct: 233 MTCYRALKCSVYARVD---------IIIKDEIPY---------VMEVNTLPGMTKNSLLP 274
Query: 435 QQASKVGFSHSNILRTII 452
+ A G S+S +L II
Sbjct: 275 KSAHAAGISYSKLLDMII 292
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 120/305 (39%), Gaps = 97/305 (31%)
Query: 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 693
N +A+HG GEDGT+Q LE GVPYTG +++S CMDK
Sbjct: 52 NLDIALLALHGEYGEDGTIQGTLETLGVPYTGSVMLSSGICMDK---------------- 95
Query: 694 TINKDVRRKEDLLKTPIVDIWHEL--TSKLQCKT-------LCVKPARDGCSTGVARLCC 744
++K + R ED ++TP W L T +LQ L VKP G S GV
Sbjct: 96 NMSKKMIRYED-IQTP---DWIHLSNTEELQLDEIDKMGYPLVVKPNSGGSSVGVK---- 147
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
VY K D +L S + K
Sbjct: 148 ----IVYDK---------------------------------------DSLLSSLEDVFK 164
Query: 805 NADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI-NLT 862
++ + + EIT ++ GK L+P ++++ + + K+ I +
Sbjct: 165 WDSEIVIEKYIKGEEITCSILDGK------LLPIISIQHTAEFFDYHAKYDDIATIEEVV 218
Query: 863 PPPASIMS--TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEV-LIIEVNTVPGMT 919
PA+ EA C + AL+ ++R+D + E+ ++EVNT+PGMT
Sbjct: 219 ELPATTYERVAEAAMTCYR-------ALKCSVYARVDIII---KDEIPYVMEVNTLPGMT 268
Query: 920 PSTVL 924
+++L
Sbjct: 269 KNSLL 273
>gi|288923495|ref|ZP_06417614.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
gi|288345153|gb|EFC79563.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
Length = 390
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 128/287 (44%), Gaps = 37/287 (12%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
VD+VFP +HG FGEDG IQ +L+ +P+VG+G A A DK ++ G P
Sbjct: 129 TVDVVFPLLHGPFGEDGTIQGLLDMSGLPYVGSGVFASATAMDKQHMKRILAASGLPVGP 188
Query: 223 SFLLQ-GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV--AYGVIDSLKKAK 279
+++ G ++E+E + V VKP R GSSIG++ A+ +D+ KA
Sbjct: 189 YTVVRPGQTLSETERELLGL---------PVFVKPARGGSSIGISRVDAWADLDTAFKAA 239
Query: 280 GIILEGIDDRVVVELFLEGGSEFTAIVLDV--GSGFDCHPVVLLPTEVELQFQGSVDVRE 337
D +V+VE + G E VLD GSG P +P E+ V
Sbjct: 240 ----RSSDPKVLVEAAIV-GREIECGVLDRLDGSG----PEASVPAEIT--------VTS 282
Query: 338 KDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397
+++ KY+ + P + P + +R A+ ++ L AR+D + P+
Sbjct: 283 SAGFYDFEAKYV-SDGARLDVPAQLPHELTERVRATATAAYEALDCAGLARVDMFVTPAG 341
Query: 398 THVFSSSETKYGSTEWGTILFTDINLISGME---QTSFLFQQASKVG 441
V + T G T T +F + SG++ T L Q A + G
Sbjct: 342 DIVLNEVNTMPGFTS--TSMFPQVWAASGLDFAALTDRLVQLALRDG 386
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 118/295 (40%), Gaps = 70/295 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK--VATSLALNHLADLGVLTI 695
VF +HG GEDGT+Q LL+ G+PY G GV AS T MDK + LA + L +G T+
Sbjct: 133 VFPLLHGPFGEDGTIQGLLDMSGLPYVGSGVFASATAMDKQHMKRILAASGLP-VGPYTV 191
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
VR + L E +L + VKPAR G S G++R+ DL KA
Sbjct: 192 ---VRPGQTL---------SETERELLGLPVFVKPARGGSSIGISRVDAWADLDTAFKAA 239
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
P++L+ V
Sbjct: 240 RSS---------------------DPKVLVEAAIVGR----------------------- 255
Query: 816 RWVEITVGVIGK---CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI GV+ + G S+ +TV S E K+ G L P + + E
Sbjct: 256 ---EIECGVLDRLDGSGPEASVPAEITVTSSAGFYDFEAKYV-SDGARLDVP--AQLPHE 309
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
++ + AL G +R+D FV G++++ EVNT+PG T ST + Q
Sbjct: 310 LTERVRATATAAYEALDCAGLARVDMFVT-PAGDIVLNEVNTMPGFT-STSMFPQ 362
>gi|342164273|ref|YP_004768912.1| D-alanyl-alanine synthetase A [Streptococcus pseudopneumoniae
IS7493]
gi|341934155|gb|AEL11052.1| D-alanyl-alanine synthetase A [Streptococcus pseudopneumoniae
IS7493]
Length = 347
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRILESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRILES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|307709606|ref|ZP_07646059.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564]
gi|307619642|gb|EFN98765.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564]
Length = 347
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 164/380 (43%), Gaps = 49/380 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMSAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQED- 62
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + A + +VFP +HG GEDG +Q LE +P+VG +
Sbjct: 63 RLMTNATIDWDKKVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSS 122
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V ++++ V KL + V KP+ G
Sbjct: 123 LAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPSNMG 176
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L++A + D RV+VE A ++VG + +
Sbjct: 177 SSVGISKSENQ-EELRQALELAFR-YDSRVLVE------QGVNAREIEVGLLGNYYVKST 228
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y KY+ ++ P + V+ +R+ A F+
Sbjct: 229 LPGEV-----------VKDVAFYDYDAKYI-DNKITMDIPAKIGDDVVAVMRQNAETAFR 276
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G +R D ++ T+ G I ++N + G Q S
Sbjct: 277 AIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSMYPLLWDN 319
Query: 440 VGFSHSNILRTIIGHACSRF 459
+G S+ +++ ++ A F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 125/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F D + Q N
Sbjct: 192 QALE---------------------------LAF----RYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P + +
Sbjct: 214 ------EIEVGLLGNY-YVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--IGDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
>gi|289167463|ref|YP_003445732.1| D-ala,D-ala ligase [Streptococcus mitis B6]
gi|288907030|emb|CBJ21864.1| D-ala,D-ala ligase [Streptococcus mitis B6]
Length = 347
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 165/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFGSL---SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKQVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V S+++ V KL+ V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-SKITE--VEEKLNY---PVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVELAKESF 339
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 128/321 (39%), Gaps = 63/321 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTSKITEVEEKLNYP-----VFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERFL 953
+ + ++++L E F+
Sbjct: 320 MGISYPELIERLVELAKESFV 340
>gi|403514175|ref|YP_006654995.1| D-alanine-D-alanine ligase Ddl [Lactobacillus helveticus R0052]
gi|403079613|gb|AFR21191.1| D-alanine-D-alanine ligase Ddl [Lactobacillus helveticus R0052]
Length = 360
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 156/389 (40%), Gaps = 53/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VGLI GG S+E +S+ S R++ I + V +I N +A
Sbjct: 6 QVGLIFGGNSSEYEVSIVSGRNIYKAIDKEKFDVHPIWI-TNEGYFANEEESFKVLEDPS 64
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ K +L E E+L +D+ FP +HG GEDG +Q + N PFVG
Sbjct: 65 YQVKNPHKVHNISNLIEL-ENLP-EIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDIL 122
Query: 199 ACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
A DK + + G +I + F + + N +L V KL + +
Sbjct: 123 AAAVTMDKEFTKILAQRVGVPVADWIAIKRF--EYDDKNNDKLDYEKVAEKLGRD---MF 177
Query: 254 VKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
VKP+ GSS+G VT A +LK+A DD+V+VE + G TA++
Sbjct: 178 VKPSNQGSSVGVSHVTNADEYAAALKEAF-----KYDDKVLVEKTVPGTEVETAVL---- 228
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D P+V ++ K + ++Y+ KY P P +I+++
Sbjct: 229 -GND-KPIVAGVGQI---------TNAKGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTV 277
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
R A +++ ARID P G ++ T++N + G
Sbjct: 278 RRNARKVYEVTECSGMARIDSMLTPG-----------------GKVVLTEVNALPGFTNI 320
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G ++ ++ +I RF
Sbjct: 321 SMYPKLFEEAGVPYTELITRLIEVGMERF 349
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 67/337 (19%)
Query: 622 HSINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
H+I+ I+L + VF VHG +GEDG LQ L P+ G ++A+ MDK T
Sbjct: 74 HNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDILAAAVTMDKEFT 133
Query: 681 SLALNH----LAD-LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 735
+ +AD + + D + + L + ++ KL + + VKP+ G
Sbjct: 134 KILAQRVGVPVADWIAIKRFEYDDKNNDKL-------DYEKVAEKL-GRDMFVKPSNQGS 185
Query: 736 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795
S GV+ + A++ Y AL+E
Sbjct: 186 SVGVSHVTNADE---YAAALKEAF------------------------------------ 206
Query: 796 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 855
K D+++ + E+ V+G + + + +T G S + K+
Sbjct: 207 --------KYDDKVLVEKTVPGTEVETAVLGNDKPIVAGVGQIT-NAKGSFYSYKNKYDD 257
Query: 856 GTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915
+ L P + + E +D ++ + + G +RID+ + G+V++ EVN +
Sbjct: 258 NSTSKLQIP--ADLPQEIIDTVRRNARKVYEVTECSGMARIDSML-TPGGKVVLTEVNAL 314
Query: 916 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
PG T + ++ L E+ + + +++++G ERF
Sbjct: 315 PGFT--NISMYPKLFEEAGVPYTELITRLIEVGMERF 349
>gi|406955835|gb|EKD84155.1| hypothetical protein ACD_39C00215G0001 [uncultured bacterium]
Length = 379
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 105/414 (25%), Positives = 172/414 (41%), Gaps = 80/414 (19%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI-------- 126
G ++VG+I GG S E +SL SA+S++ + D V I R A+ +
Sbjct: 6 GSKIKVGVIFGGRSGEHEVSLVSAKSIMKALNPDKYEVIPVGITRQ-GAWMVGVKPDALL 64
Query: 127 SSAQVYSNTPADFD--------FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGED 178
+ S + FD + +G L + +D++FP IHG +GED
Sbjct: 65 EYGKSESRSCLAFDAADGGKASLNCDPANKGLMLLDKPKAENQVQLDVLFPIIHGTYGED 124
Query: 179 GGIQEVLEKYNVPFVGTGSRACRQAFDK-------YDASLEMS------KQGFITVPSFL 225
G +Q +LE ++P+VG G A DK DA +E++ + F T P +
Sbjct: 125 GTLQGMLELADMPYVGCGVLASAVGMDKTFSKRLFRDAGIEIAPFKEVLRSRFKTSPDAV 184
Query: 226 LQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG 285
++ E+ ESEL VKP +GSS+G++ A DSL+ A + +
Sbjct: 185 IR--EI-ESELGY------------PCFVKPVNSGSSVGISKAKNR-DSLRTALELAAQ- 227
Query: 286 IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYR 345
D +++VE + G E VL G D P+ +P E+ V E ++Y
Sbjct: 228 YDRKILVEAHVN-GREIEVSVL----GND-DPIASVPGEI-------VPCNE---FYDYN 271
Query: 346 RKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSE 405
KY+ + H P IR A ++ L AR+D +FL ++
Sbjct: 272 AKYIDDRS-ELHIPADLSAETAEQIRAMAIRAYKALDCAGMARVD-FFLERGSN------ 323
Query: 406 TKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
I+ +IN I G S + G S+S+++ ++ +A R+
Sbjct: 324 ---------RIIINEINTIPGFTSVSMYPKLWEATGISYSDLVDRLVDYAIERY 368
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 629 KLAKENQA---TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN 685
K ENQ +F +HG GEDGTLQ +LE +PY G GV+AS MDK + +
Sbjct: 101 KPKAENQVQLDVLFPIIHGTYGEDGTLQGMLELADMPYVGCGVLASAVGMDK---TFSKR 157
Query: 686 HLADLGV-LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
D G+ + K+V R KT + E+ S+L VKP G S G+++
Sbjct: 158 LFRDAGIEIAPFKEVLRSR--FKTSPDAVIREIESELGYPCF-VKPVNSGSSVGISK 211
>gi|158318443|ref|YP_001510951.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
gi|158113848|gb|ABW16045.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
Length = 321
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 125/300 (41%), Gaps = 48/300 (16%)
Query: 165 DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF-----I 219
D+VFP +HG GEDG I+EVL+ Y +P+VG ACR AFDK A + G +
Sbjct: 58 DVVFPVLHGTSGEDGTIREVLDLYGLPYVGALPPACRVAFDKATAKAAVGAAGVATPEAV 117
Query: 220 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAK 279
T+P ++ + L V P VVVKP GS+ GVT V D+ A+
Sbjct: 118 TLPREAFH--DLGAAALIERIVARLGLP----VVVKPRAGGSAFGVT---HVDDAGGLAE 168
Query: 280 GII-LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREK 338
++ G D ++E + G E V+D G G PV L E+E +
Sbjct: 169 ALMSCFGYHDSALIEQAV-AGVEIAIGVVDSGDG----PVALPAVEIE----------PR 213
Query: 339 DAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSST 398
+++Y +Y ++ TP R V+ + E A + LGL D +R D
Sbjct: 214 AGVYDYAARYT-AGATSFFTPARLHKDVLWAAAETALTAHRVLGLRDLSRTDMIV----- 267
Query: 399 HVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G F ++N+ GM TS G + + R + HAC R
Sbjct: 268 ------------DRDGVAQFLEVNVAPGMTDTSTWPMGLHAAGLDFAVVCRDLAAHACDR 315
>gi|348030098|ref|YP_004872784.1| D-alanine--D-alanine ligase [Glaciecola nitratireducens FR1064]
gi|347947441|gb|AEP30791.1| D-alanine--D-alanine ligase [Glaciecola nitratireducens FR1064]
Length = 329
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 148/374 (39%), Gaps = 75/374 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S +VL+ +Q ++A+ A+ N D
Sbjct: 26 KVAVLFGGNSAERKVSLASGTAVLNALQA-----------AGVDAHKFDPAE---NPIGD 71
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+A GF D F +HGR GEDG +Q L+ +P+ GTG
Sbjct: 72 L------IALGF--------------DRAFIILHGRGGEDGSMQGALQLLGIPYTGTGVL 111
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK + S T P +L +VN + ++ L SG +VKP R
Sbjct: 112 GSALAMDKVYSKQVWSTLALPTAPYKVLTKDQVNAALKPDYAAL--LAKLSGVAMVKPAR 169
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIG+ D L+ A LE DD V++E ++ G E+T +L+
Sbjct: 170 EGSSIGMA-KVSQPDELESAVKQALE-YDDDVLIEQYIN-GPEYTVTILN---------G 217
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
V LP S+ + ++Y KY + YH P + + A F
Sbjct: 218 VALP---------SIRMATPHVFYDYDAKY-NDKTTEYHCPSGLDDTTEKQVGQLALSAF 267
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
Q L + R+D E G + + N + GM +TS + + A
Sbjct: 268 QGLSGRGWGRVD-----------------LMRNEHGEFMLLESNTVPGMTETSLVPKAAK 310
Query: 439 KVGFSHSNILRTII 452
+ G S ++ ++
Sbjct: 311 QAGLSFEQLVLQVL 324
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P + I + I L + FI +HG GEDG++Q L+ G+PYTG GV+ S MDKV
Sbjct: 64 PAENPIGDLIALGFDR---AFIILHGRGGEDGSMQGALQLLGIPYTGTGVLGSALAMDKV 120
Query: 679 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 738
+ + LA + T V K D + + + L +KL + VKPAR+G S G
Sbjct: 121 YSKQVWSTLA---LPTAPYKVLTK-DQVNAALKPDYAALLAKLSGVAM-VKPAREGSSIG 175
Query: 739 VARLCCAEDLTVYVK-ALE 756
+A++ ++L VK ALE
Sbjct: 176 MAKVSQPDELESAVKQALE 194
>gi|289624931|ref|ZP_06457885.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289650492|ref|ZP_06481835.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422582378|ref|ZP_16657514.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330867221|gb|EGH01930.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 363
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 153/388 (39%), Gaps = 51/388 (13%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S+E +SL SAR+V++ I + + +D+ A N
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64
Query: 140 DFKLESLAQGFGSL-----SEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
KL + + L +F E A +D+VFP IHG FGEDG +Q VL V
Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
PFVG A DK + G P +L +E LS +L
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAET----LSFADAATQLGL--- 177
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP GSS+GV+ V D + L D +L +E G VG
Sbjct: 178 PMFVKPANQGSSVGVS---KVSDEAGFVAALALGFEFDH---KLLIEQGI--------VG 223
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
+C VL + ++ G +V D + Y KYL Q P FP + + +
Sbjct: 224 REVEC--AVLGNFDAQVSVCG--EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQV 279
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
RE A ++ LG +R+D F ++T+ I+ ++N + G
Sbjct: 280 REVALQAYKVLGCAGLSRVD----------FFVTDTR-------DIIINEVNTLPGFTSI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G +++ ++ +I A R
Sbjct: 323 SMYPKLWQASGLTYAELIHRLIVLALER 350
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 122/318 (38%), Gaps = 70/318 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ +L VP+ G V+AS CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGVLRMLAVPFVGADVLASAACMDKDVTK---RLLRDAGIAVAP 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V + + L + + ++L + VKPA G S GV+++ D +V AL
Sbjct: 157 FMVLSRAETLS------FADAATQLGLP-MFVKPANQGSSVGVSKVS---DEAGFVAAL- 205
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
A G E D L Q
Sbjct: 206 -------------ALGF-----------------EFDHKLLIEQGIVGR----------- 224
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMSTEA 873
E+ V+G + S+ V + + + + K+ G + P PA +
Sbjct: 225 --EVECAVLGNFDAQVSVCGEVIAND--EFYAYDTKYLNGDQARIAIPAEFPADLS---- 276
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
D+ ++ L G SR+D FV D +++I EVNT+PG T ++ ++ L +
Sbjct: 277 -DQVREVALQAYKVLGCAGLSRVDFFVT-DTRDIIINEVNTLPGFT--SISMYPKLWQAS 332
Query: 934 PMYPHQFFRKVLDLGSER 951
+ + +++ L ER
Sbjct: 333 GLTYAELIHRLIVLALER 350
>gi|325912205|ref|ZP_08174602.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
UPII 143-D]
gi|325475864|gb|EGC79033.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
UPII 143-D]
Length = 360
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 165/400 (41%), Gaps = 69/400 (17%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ +RVGLI GG S+E +S+ S R++ I + V +I N ++S
Sbjct: 3 KKIRVGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWI---TNTGFLASDADSRKV 59
Query: 136 PADFDFKLES--LAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
D +++E+ ++ E + +D+ FP +HG GEDG +Q +L + PFV
Sbjct: 60 LEDPTYQIENPHTVTNISNVIELSNR--PEIDVFFPIVHGNLGEDGCLQGLLRILDKPFV 117
Query: 194 GTGSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
G A DK + + G +I++ F + ++ +LS +V+ +L +
Sbjct: 118 GDDVLAAAITMDKELNKIMAQRAGVPVADWISIKRF--EYNDAKNEKLSYDYVSQQLGTD 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ VKP+ GSS+G++ D +KA + DD+V+VE ++G
Sbjct: 176 ---LFVKPSNQGSSVGISHVTSAAD-YEKALAEAFK-YDDKVLVEETIKG---------- 220
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVD---------VREKDAIFNYRRKYLPTQQVAYHTP 359
TEVE G+ D + + ++Y KY P
Sbjct: 221 --------------TEVETAVLGNDDAIVSGVGQITNAQGSWYSYENKYNDNSTSKLQIP 266
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
P ++ ++R A ++ AR+D SS+ K ++F
Sbjct: 267 ADLPAEIVETVRSQALKVYHATECSGLARVDSML---------SSDNK--------VIFN 309
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G S + +VG S++ ++ ++ +A R+
Sbjct: 310 ELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYALDRY 349
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 137/339 (40%), Gaps = 73/339 (21%)
Query: 623 SINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 681
+I+ I+L+ + VF VHG +GEDG LQ LL P+ G V+A+ MDK
Sbjct: 75 NISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAITMDKELNK 134
Query: 682 LALNH----LAD-LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 736
+ +AD + + + + E L ++ S+ L VKP+ G S
Sbjct: 135 IMAQRAGVPVADWISIKRFEYNDAKNEKLS--------YDYVSQQLGTDLFVKPSNQGSS 186
Query: 737 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 796
G++ + A D Y KAL E
Sbjct: 187 VGISHVTSAAD---YEKALAEAF------------------------------------- 206
Query: 797 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 856
K D+++ + + E+ V+G ++ S + +T G S E K+
Sbjct: 207 -------KYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQIT-NAQGSWYSYENKYNDN 258
Query: 857 TGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
+ L P PA I+ T + + + +A + G +R+D+ ++ DN +V+ E+N
Sbjct: 259 STSKLQIPADLPAEIVET-----VRSQALKVYHATECSGLARVDSMLSSDN-KVIFNELN 312
Query: 914 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
++PG T + ++ L EQ + + K+L+ +R+
Sbjct: 313 SLPGFT--NISMYPKLFEQVGISYTELITKLLNYALDRY 349
>gi|311104003|ref|YP_003976856.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8]
gi|310758692|gb|ADP14141.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8]
Length = 316
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 148/380 (38%), Gaps = 78/380 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S V A+ SA V ++
Sbjct: 7 KVGVLYGGRSAEREVSLMSGAGVHQ---------------------ALLSAGVDAHL--- 42
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G SLSE A A D VF +HGR+GEDG IQ LE +P+ G+G
Sbjct: 43 FD-------TGERSLSELA---AQGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPL 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK + G T P F E+ +++ V ++L S +++KP
Sbjct: 93 ASALAMDKTMTKRVWLQHGLPT-PDF-----ELLDADTELRLVPDRL---SLPLIIKPPH 143
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G+T G D K D V+ E F+ G E T VL G PV
Sbjct: 144 EGSTVGITKVVGYSD--MKEAYAAAARFDAEVLAEQFIT-GRELTVAVLGGGKTARALPV 200
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+++ ++Y KY + Y P P V + E A +
Sbjct: 201 --------------IEIAAPGGNYDYEHKYF-SDDTQYFCPATLPPEVAAEVAEIAVQAY 245
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
Q LG + R D F+ + W ++N GM S + A
Sbjct: 246 QALGCEGWGRAD--FI-----------LDRDNRPW----LLEMNTSPGMTSHSLVPMAAK 288
Query: 439 KVGFSHSNILRTIIGHACSR 458
VG S++++ I+ A +
Sbjct: 289 AVGISYADLCVAILSEAACK 308
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 117/303 (38%), Gaps = 78/303 (25%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 686
+LA + VFIA+HG GEDGT+Q LE G+PYTG G +AS MDK T + L H
Sbjct: 52 ELAAQGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHG 111
Query: 687 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
D +L + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPDFELLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
D+ K R ++ E F+ E+
Sbjct: 156 YSDM----KEAYAAAARFDAE------------------VLAEQFITGREL--------- 184
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP- 863
TV V+G G +P + + G E K+ P
Sbjct: 185 ----------------TVAVLGG-GKTARALPVIEIAAPGGNYDYEHKYFSDDTQYFCPA 227
Query: 864 --PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921
PP ++ E + Q + AL EG+ R D ++ DN ++E+NT PGMT
Sbjct: 228 TLPPE--VAAEVAEIAVQAYQ----ALGCEGWGRADFILDRDN-RPWLLEMNTSPGMTSH 280
Query: 922 TVL 924
+++
Sbjct: 281 SLV 283
>gi|443306830|ref|ZP_21036617.1| D-alanyl-alanine synthetase A [Mycobacterium sp. H4Y]
gi|442764198|gb|ELR82196.1| D-alanyl-alanine synthetase A [Mycobacterium sp. H4Y]
Length = 381
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 167/409 (40%), Gaps = 71/409 (17%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DRNLNAY 124
GG RV ++ GG S E IS SA S+L ++ + V I D + A
Sbjct: 15 GGERARVAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPEGSWVLTDGDPAAL 74
Query: 125 AISS---AQVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
AI+ +V + + + + G SL A + A+VD+VFP +HG +GEDG
Sbjct: 75 AITDRRLPEVTAESGTELALPADPRRGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGT 134
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE VP+VG G A DK + +G +L+ S
Sbjct: 135 IQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVLRPSRA--------- 185
Query: 241 VTNKLDPNSGK-----VVVKPTRAGSSIGVT--VAYGVIDSLKKAKGIILEGIDDRVVVE 293
+L P + V VKP R GSSIGV+ ++ +D+ A D +V+VE
Sbjct: 186 ---RLRPEECQRLGLPVFVKPARGGSSIGVSRVASWDQLDAAVAAA----RRHDPKVIVE 238
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR----EKDAIFNYRRKYL 349
+ VG +C + + VE G + V +D+ +++ KYL
Sbjct: 239 AAI------------VGRELECGVLEMPDGTVEASALGEIRVAGVRGREDSFYDFATKYL 286
Query: 350 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409
P + + +++R+ A F+ + AR+D +FL
Sbjct: 287 -DDAAELDVPAKVDDEIADTVRQLAIRAFRAIDCQGLARVD-FFL--------------- 329
Query: 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
TE G +L +IN + G S + + G + +L T++ A +R
Sbjct: 330 -TEDGPVL-NEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 376
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 68/157 (43%), Gaps = 38/157 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHL--ADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV+AS MDK T A L D VL
Sbjct: 121 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVL 180
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDLT 749
++ R E +C+ L VKPAR G S GV+R+ + L
Sbjct: 181 RPSRARLRPE------------------ECQRLGLPVFVKPARGGSSIGVSRVASWDQLD 222
Query: 750 VYVKALEECLLRIPPNSFSRAH--------GMIEMPN 778
V A R P A G++EMP+
Sbjct: 223 AAVAAAR----RHDPKVIVEAAIVGRELECGVLEMPD 255
>gi|433463007|ref|ZP_20420575.1| D-alanine--D-alanine ligase [Halobacillus sp. BAB-2008]
gi|432188144|gb|ELK45362.1| D-alanine--D-alanine ligase [Halobacillus sp. BAB-2008]
Length = 314
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 155/378 (41%), Gaps = 78/378 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++ ++ GG S ER +SL++ + ++ NA +V S
Sbjct: 1 MKIAVLYGGTSGEREVSLSTGKGII-------------------NALKNKGHEVVS---V 38
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DF S E L +VD+VF +HGRFGEDG IQ VL+ +P+VG+G
Sbjct: 39 DF------------SPDRINEVLDLDVDLVFIGLHGRFGEDGKIQGVLDMMELPYVGSGV 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A A DK + S G T S +V +S L + V+KP
Sbjct: 87 LASALAMDKAKSKQLFSLNGLHTAKSV---AYDVRDSTLFHKIEEEIKKEFQLPFVIKPN 143
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
+ GS++G+T ++ K+ KG I D ++VE F+ G E T V+
Sbjct: 144 QEGSTLGLT----IVKEEKQIKGAIETAAKSDTDILVEDFI-SGREVTVPVIGKKGKEQA 198
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV +++ K+ +++ KY P + P + + +++ A
Sbjct: 199 LPV--------------IEIIPKNDYYDFDSKYKPGGS-EHIVPAKVEDALTEKLQQHAV 243
Query: 376 LLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
L Q LG CD ++R+D + E + ++N + GM TS
Sbjct: 244 LAHQLLG-CDVYSRVD-----------------FIINERNEPVILEVNTLPGMTPTSLFP 285
Query: 435 QQASKVGFSHSNILRTII 452
A VG+S+ ++++ +
Sbjct: 286 DSAQAVGWSYDDLIQKFV 303
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 132/303 (43%), Gaps = 65/303 (21%)
Query: 624 INEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-- 681
INE + L + VFI +HG GEDG +Q +L+ +PY G GV+AS MDK +
Sbjct: 45 INEVLDL---DVDLVFIGLHGRFGEDGKIQGVLDMMELPYVGSGVLASALAMDKAKSKQL 101
Query: 682 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+LN L ++ DVR T I E+ + Q +KP ++G + G
Sbjct: 102 FSLNGLHT--AKSVAYDVRDS-----TLFHKIEEEIKKEFQL-PFVIKPNQEGSTLG--- 150
Query: 742 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 801
LT+ VK EE ++ G IE ++ E F+
Sbjct: 151 ------LTI-VK--EEKQIK----------GAIETAAKSDTDILVEDFI----------- 180
Query: 802 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861
+ R E+TV VIGK G +L P + + D + K++ G ++
Sbjct: 181 ------------SGR--EVTVPVIGKKGKEQAL-PVIEIIPKNDYYDFDSKYKPGGSEHI 225
Query: 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921
P TE K +Q L L + +SR+D +N N E +I+EVNT+PGMTP+
Sbjct: 226 VPAKVEDALTE---KLQQHAVLAHQLLGCDVYSRVDFIINERN-EPVILEVNTLPGMTPT 281
Query: 922 TVL 924
++
Sbjct: 282 SLF 284
>gi|392536661|ref|ZP_10283798.1| D-alanine-D-alanine ligase B [Pseudoalteromonas marina mano4]
Length = 306
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 147/377 (38%), Gaps = 87/377 (23%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S ++V + +Q N AI+
Sbjct: 10 KVAVMLGGNSAEREVSLKSGQAVFNALQ-------------NCGVDAIA----------- 45
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD + SL + L E NVD VF +HGR GEDG +Q LE N+P+ G+
Sbjct: 46 FDPQNRSLWE----LKEL------NVDRVFIALHGRGGEDGTVQGALEFMNLPYTGSNVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK G T P ++ + F + + KV+VKP+
Sbjct: 96 GSALAMDKIRCKHLFKSAGLSTAPYAVV--------DAKKGFDAHAIMAEFKKVMVKPSH 147
Query: 259 AGSSIGV---TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ T A + D+L A D +V+VE ++ G EFT VL G +
Sbjct: 148 EGSSIGMAQATTAQELEDALINAF-----KFDSQVLVEQWIT-GREFTVTVL----GDEV 197
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV+ + T + ++Y+ KY + YH P ++ +
Sbjct: 198 QPVIEMTT--------------PNGFYDYQAKY-QSNTTQYHCPANLSAHDTQQLQAMSL 242
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F +G + R+D E G ++N + GM + S +
Sbjct: 243 EAFDLVGASGWGRVDAM-----------------QDEQGNFYLLEVNTVPGMTEKSLVPM 285
Query: 436 QASKVGFSHSNILRTII 452
A G S ++ I+
Sbjct: 286 AAKANGASFEQLVVRIL 302
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 128/314 (40%), Gaps = 86/314 (27%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P S+ W +L + N VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+
Sbjct: 48 PQNRSL--W-ELKELNVDRVFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKI 104
Query: 679 ATSLALNHLADLGVLTINK----DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 734
HL L+ D ++ D H + ++ K + VKP+ +G
Sbjct: 105 RCK----HLFKSAGLSTAPYAVVDAKKGFDA---------HAIMAEF--KKVMVKPSHEG 149
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 794
S G+A+ A++ LE+ L+ N+F
Sbjct: 150 SSIGMAQATTAQE-------LEDALI----NAFK-------------------------- 172
Query: 795 ILFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
F SQ + +W+ E TV V+G + P + + +
Sbjct: 173 --FDSQVLVE-----------QWITGREFTVTVLGD-----EVQPVIEMTTPNGFYDYQA 214
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLII 910
K+Q T P S T+ L Q + L A + + G+ R+DA + + G ++
Sbjct: 215 KYQSNTTQYHCPANLSAHDTQQL----QAMSLEAFDLVGASGWGRVDAMQD-EQGNFYLL 269
Query: 911 EVNTVPGMTPSTVL 924
EVNTVPGMT +++
Sbjct: 270 EVNTVPGMTEKSLV 283
>gi|387877031|ref|YP_006307335.1| D-alanyl-alanine synthetase A [Mycobacterium sp. MOTT36Y]
gi|386790489|gb|AFJ36608.1| D-alanyl-alanine synthetase A [Mycobacterium sp. MOTT36Y]
Length = 381
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 167/409 (40%), Gaps = 71/409 (17%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DRNLNAY 124
GG RV ++ GG S E IS SA S+L ++ + V I D + A
Sbjct: 15 GGERARVAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPEGSWVLTDGDPAAL 74
Query: 125 AISS---AQVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
AI+ +V + + + + G SL A + A+VD+VFP +HG +GEDG
Sbjct: 75 AITDRRLPEVTAESGTELALPADPRRGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGT 134
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE VP+VG G A DK + +G +L+ S
Sbjct: 135 IQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVLRPSRA--------- 185
Query: 241 VTNKLDPNSGK-----VVVKPTRAGSSIGVT--VAYGVIDSLKKAKGIILEGIDDRVVVE 293
+L P + V VKP R GSSIGV+ ++ +D+ A D +V+VE
Sbjct: 186 ---RLRPEECQRLGLPVFVKPARGGSSIGVSRVASWDQLDAAVAAA----RRHDPKVIVE 238
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR----EKDAIFNYRRKYL 349
+ VG +C + + VE G + V +D+ +++ KYL
Sbjct: 239 AAI------------VGRELECGVLEMPDGTVEASALGEIRVAGVRGREDSFYDFATKYL 286
Query: 350 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409
P + + +++R+ A F+ + AR+D +FL
Sbjct: 287 -DDAAELDVPAKVDDEIADTVRQLAIRAFKAIDCQGLARVD-FFL--------------- 329
Query: 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
TE G +L +IN + G S + + G + +L T++ A +R
Sbjct: 330 -TEDGPVL-NEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 376
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 68/157 (43%), Gaps = 38/157 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHL--ADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV+AS MDK T A L D VL
Sbjct: 121 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVL 180
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDLT 749
++ R E +C+ L VKPAR G S GV+R+ + L
Sbjct: 181 RPSRARLRPE------------------ECQRLGLPVFVKPARGGSSIGVSRVASWDQLD 222
Query: 750 VYVKALEECLLRIPPNSFSRAH--------GMIEMPN 778
V A R P A G++EMP+
Sbjct: 223 AAVAAAR----RHDPKVIVEAAIVGRELECGVLEMPD 255
>gi|332283267|ref|YP_004415178.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7]
gi|330427220|gb|AEC18554.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7]
Length = 315
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 155/380 (40%), Gaps = 78/380 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVG++ GG SAER +SL S + V + + R +D +L
Sbjct: 7 RVGVLYGGRSAEREVSLMSGQGVFEAL-------RSVGVDAHL----------------- 42
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD +L + + A D VF +HGR+GEDG +Q LE +P+ G+G+
Sbjct: 43 FDTGRYTLV----------DLINAGFDRVFIALHGRYGEDGTLQGALELMGLPYTGSGTL 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK +QG T +L+ +++L++ V LD +++KP
Sbjct: 93 ASSLAMDKIMTKQVWLQQGLPTPRYAILR----PDTDLAS--VAAVLDL---PLIIKPPH 143
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++GVT G +DSL++A + D V+ E F+ G E T +L G PV
Sbjct: 144 EGSTLGVTKVDG-LDSLREAYQLAAR-YDADVLAEQFIV-GRELTVALLGGGGSARALPV 200
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+++ D ++Y KY+ + Y P + + SIR+ A +
Sbjct: 201 --------------IEIVAPDGNYDYEHKYI-SNDTQYICPAKLDDALSASIRQIAEQAY 245
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
LG + R D + E G +IN GM S + A
Sbjct: 246 VALGCEGWGRAD-----------------FMLDEAGKPWLLEINTSPGMTSHSLVPMAAK 288
Query: 439 KVGFSHSNILRTIIGHACSR 458
G S++ + I+ A +
Sbjct: 289 ADGMSYAELCLEILSTASCK 308
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 31/43 (72%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
VFIA+HG GEDGTLQ LE G+PYTG G +AS MDK+ T
Sbjct: 61 VFIALHGRYGEDGTLQGALELMGLPYTGSGTLASSLAMDKIMT 103
>gi|386857590|ref|YP_006261767.1| D-alanine--D-alanine ligase [Deinococcus gobiensis I-0]
gi|380001119|gb|AFD26309.1| D-alanine--D-alanine ligase [Deinococcus gobiensis I-0]
Length = 339
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 103/386 (26%), Positives = 153/386 (39%), Gaps = 57/386 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG S E +SL SARSVL + D V I S Q P D
Sbjct: 4 RILLLAGGQSGEHEVSLMSARSVLAALPRDQFDVTPVVI----------SKQGRWLPPTD 53
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANV---DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
LE+ G + H AA+ D VFP +HG GEDG IQ +L +PFVG+
Sbjct: 54 TVRALETGVSAPGG--DLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGS 111
Query: 196 GSRACRQAFDKYDASLEMSKQGFIT--VPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G + DK M+KQ + +P + + E + V + +
Sbjct: 112 GVLGSAASMDKV-----MTKQVLASAGIPQVAWRLAVRREWAQNPDAVRARAHDLGFPLF 166
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
VKP GSS+G++ +G D L A + +D RV+ LE + ++VG
Sbjct: 167 VKPANLGSSVGISKVHGP-DELDAALTLAFS-LDRRVI----LEAMTAHKPREVEVGILG 220
Query: 314 DCHPVVLLPTEV-ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ P+ + V EL F ++Y KY Q H P P V +RE
Sbjct: 221 NDAPIA---SPVGELSFAAE--------FYDYATKYT-EGQATMHIPAPLPAEVAARVRE 268
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F L AR+D +++ E G + ++N + G TS
Sbjct: 269 LALQAFLALDCAGLARVDFFYV----------------EETGELFLNEVNTMPGFTTTSM 312
Query: 433 LFQQASKVGFSHSNILRTIIGHACSR 458
+ G S+S ++ ++ A R
Sbjct: 313 YPKLFGAAGLSYSELVTRLVELALER 338
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 118/314 (37%), Gaps = 80/314 (25%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E VF +HG +GEDGT+Q LL G+P+ G GV+ S MDKV T LA G+
Sbjct: 78 EGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAASMDKVMTK---QVLASAGI 134
Query: 693 ------LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
L + ++ + D ++ D+ L VKPA G S G+
Sbjct: 135 PQVAWRLAVRREWAQNPDAVRARAHDLGF---------PLFVKPANLGSSVGI------- 178
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806
S+ HG E+ + + F ++ + + +K
Sbjct: 179 ---------------------SKVHGPDEL-----DAALTLAFSLDRRVILEAMTAHKPR 212
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
E+ VG++G + S P + + + K+ G P P
Sbjct: 213 ------------EVEVGILGNDAPIAS--PVGELSFAAEFYDYATKYTEGQATMHIPAP- 257
Query: 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926
+ E + ++ AL G +R+D F + GE+ + EVNT+PG T ++
Sbjct: 258 --LPAEVAARVRELALQAFLALDCAGLARVDFFYVEETGELFLNEVNTMPGFTTTS---- 311
Query: 927 QALSEQPPMYPHQF 940
MYP F
Sbjct: 312 --------MYPKLF 317
>gi|376293150|ref|YP_005164824.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae HC02]
gi|372110473|gb|AEX76533.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae HC02]
Length = 365
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 157/405 (38%), Gaps = 79/405 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ-------------------GDDLLVRCYYID 118
++V +I GG S+E +S SA +++ H+ G+ R +D
Sbjct: 16 IKVAIIYGGRSSEHSVSCVSAGAIMAHLDPQRYEVFPVGITHDGVWTVGESDPSRLKTVD 75
Query: 119 RNLNAYAIS---SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRF 175
R + + S V NT + F+ SL A VD+VFP +HGRF
Sbjct: 76 RVMPEVQFTREVSLSVNPNTAGELRFEDGSLY--------------AKVDVVFPVLHGRF 121
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
GEDG IQ + E VP+VGTG + DK M+ +G +L+GSE E
Sbjct: 122 GEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEE 181
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVEL 294
V VKP R GSSIG++ V D S A + D +V+VE
Sbjct: 182 HKREL--------GLPVFVKPARGGSSIGISR---VADWSEWDAALSLAREHDSKVIVE- 229
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQ 353
+E + ++ G ++ +LQ D E D + + KYL
Sbjct: 230 -----AEIVGVEVECGVLERIDGSLMASVPAQLQ-----DTDEGDEGFYGFDTKYL-DDV 278
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
V H P F I+E + F L AR+D +F+ T+
Sbjct: 279 VTAHIPAPFDAETTALIQELSLKAFTALSCRGLARVD-FFV----------------TDH 321
Query: 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G S Q G ++ +L +I A +
Sbjct: 322 GPVL-NEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQALHK 365
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 122/312 (39%), Gaps = 89/312 (28%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q L E GVPY G GV++S MDK T L L + K
Sbjct: 113 VFPVLHGRFGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFT----KKLMAAEGLPVGK 168
Query: 698 DV--RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+V R E L + E +L VKPAR G S G++R+ D + + AL
Sbjct: 169 EVILRGSETLTE--------EHKRELGLPVF-VKPARGGSSIGISRVA---DWSEWDAAL 216
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
S +R H +++ +
Sbjct: 217 ----------SLAREHD----------------------------------SKVIVEAEI 232
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVK----ESGD--ILSLEEKFQGGTGINLTPPPASIM 869
VE+ GV+ + SLM SV + + GD + K+ P P
Sbjct: 233 VGVEVECGVLERIDG--SLMASVPAQLQDTDEGDEGFYGFDTKYLDDVVTAHIPAPFDAE 290
Query: 870 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+T + Q + L A AL G +R+D FV D+G VL E+NT+PG TP +
Sbjct: 291 TTALI----QELSLKAFTALSCRGLARVDFFVT-DHGPVL-NEINTMPGFTPIS------ 338
Query: 929 LSEQPPMYPHQF 940
MYP F
Sbjct: 339 ------MYPQVF 344
>gi|417783211|ref|ZP_12430934.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. C10069]
gi|409953912|gb|EKO08408.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. C10069]
Length = 351
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDVDIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 733
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 850
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYREGKFKKIALPATEIVPGGEFFDFE 254
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 156/385 (40%), Gaps = 56/385 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-----LNAYAISSAQVYS 133
++ + GG S E IS+ + + + V+ + ++ + Y +S S
Sbjct: 3 KIAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVS 62
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N+P D E + +G +S + + +VDIVF +HG GEDG IQ LE +P+
Sbjct: 63 NSP---DLFQEEFQKRYG-VSRTNQIFSLDVDIVFLGLHGGQGEDGTIQGFLEILGIPYT 118
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW--FVTNKLDPNSGK 251
G+G A A DK A+ + G P F E+++ E N V KL+
Sbjct: 119 GSGVLASAIAMDKTRANQIFLQSGQKVAPFF-----EIDKLEYLNSTDAVITKLETLGFP 173
Query: 252 VVVKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+KP GSS+ V Y + + LK+ +I E D +V+ + FL G E + VL+
Sbjct: 174 QFLKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLT-GIEVSCGVLER 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH--TPPRFPIVVI 367
+ L TE + F++ KY +Q H TP R +
Sbjct: 229 YREGKFKKIALPATE----------IVPGGEFFDFESKY---KQGGSHEITPARISEQEM 275
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++E A + LG ++R D + H+ + N + GM
Sbjct: 276 KRVQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL------------------ETNTLPGM 317
Query: 428 EQTSFLFQQASKVGFSHSNILRTII 452
+TS + QQA G S + +I
Sbjct: 318 TETSLIPQQAKAAGISMEEVFSDLI 342
>gi|350563271|ref|ZP_08932093.1| D-alanine/D-alanine ligase [Thioalkalimicrobium aerophilum AL3]
gi|349779135|gb|EGZ33482.1| D-alanine/D-alanine ligase [Thioalkalimicrobium aerophilum AL3]
Length = 322
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 152/381 (39%), Gaps = 82/381 (21%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ ++ GG SAER +SL S +S++ + + L V Y + R+LN
Sbjct: 22 IAVLYGGVSAEREVSLRSGQSIVKALTEEGLNVTGYDV-RSLNDLV-------------- 66
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+AAN +VF +HGR+GEDG +Q VL+ V F G+G A
Sbjct: 67 -------------------DVAANHCLVFLALHGRWGEDGQVQAVLQSLGVVFTGSGMAA 107
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA 259
A DK G T P+F VN++ L+ +N P +VK +
Sbjct: 108 SALAMDKIRTKYVWQGAGLPT-PAFY----RVNKASLTTLLWSNMPLP----AMVKASHE 158
Query: 260 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
GSSIG+ +D LK A L+ +DD V+VE ++ G EFT +L
Sbjct: 159 GSSIGL-FKVNTLDELKWAVEQALQ-LDDEVLVEQWVS-GREFTFAIL---------ASE 206
Query: 320 LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
+LP +++++ + ++Y KY+ + Y P + S+ E F
Sbjct: 207 VLP---------AIELKTQHDFYDYDAKYV-SGDTEYLCPVSLMQSELASMNELVLKAFD 256
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
LG RID E G ++N + GM S + + A
Sbjct: 257 VLGAQGIGRIDIML-----------------DEIGQPWLIELNTLPGMTDMSLVPKAAKH 299
Query: 440 VGFSHSNILRTIIGHACSRFP 460
G S+ + I+G A P
Sbjct: 300 YGLSYGELCIAILGQAVDASP 320
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
TG+D+ S+N+ + +A N VF+A+HG GEDG +Q++L++ GV +TG G+
Sbjct: 55 TGYDV-------RSLNDLVDVAA-NHCLVFLALHGRWGEDGQVQAVLQSLGVVFTGSGMA 106
Query: 670 ASKTCMDKVAT 680
AS MDK+ T
Sbjct: 107 ASALAMDKIRT 117
>gi|374608520|ref|ZP_09681319.1| D-alanine/D-alanine ligase [Mycobacterium tusciae JS617]
gi|373554052|gb|EHP80639.1| D-alanine/D-alanine ligase [Mycobacterium tusciae JS617]
Length = 375
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 163/406 (40%), Gaps = 65/406 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DRNLNAYAISS 128
+RV ++ GG S+E IS SA S+L ++ + V I D +A AIS
Sbjct: 13 VRVAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAVGITPEGAWMLTDARPDALAISE 72
Query: 129 AQVYSNTPADFDFKLESLAQGFG------SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQ 182
++ T A K +LA G SL A + VD+VFP +HG +GEDG IQ
Sbjct: 73 GRLPQVTGASG--KELALAADPGRSGELLSLGRGAPEVLGAVDVVFPVLHGPYGEDGTIQ 130
Query: 183 EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE--VNESELSNWF 240
+LE VP+VG G A DK ++ +G +L+ + VN+ +
Sbjct: 131 GLLELAGVPYVGAGVLASASGMDKEFTKKLLAAEGLPIGDQVVLRPRQETVNQKDRERLG 190
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
+ V VKP R GSSIGV+ D L A + D +V+VE +
Sbjct: 191 L---------PVFVKPARGGSSIGVS-RVAAWDQLPAAIELARRH-DPKVIVEAAV---- 235
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR----EKDAIFNYRRKYLPTQQVAY 356
VG +C + +E G + V +D+ +++ KYL
Sbjct: 236 --------VGRELECGVLEFPDGRIEASTVGEIRVAGVRGREDSFYDFATKYL-EDAAEL 286
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P + V + +R+ A F + AR+D +FL TE G +
Sbjct: 287 DVPAKIDDSVADEVRQLAIRAFGAIDCQGLARVD-FFL----------------TEDGPV 329
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
+ +IN + G S + G + +L T++ A R L
Sbjct: 330 I-NEINTMPGFTTISMFPMMWAASGIDYPTLLATMVDTAQKRGTGL 374
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE GVPY G GV+AS + MDK T LA G+ ++
Sbjct: 115 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASASGMDKEFTK---KLLAAEGLPIGDQ 171
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V R P + ++ + + VKPAR G S GV+R+ + L ++
Sbjct: 172 VVLR-------PRQETVNQKDRERLGLPVFVKPARGGSSIGVSRVAAWDQLPAAIE 220
>gi|398869891|ref|ZP_10625248.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM74]
gi|398210303|gb|EJM96955.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM74]
Length = 364
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 162/408 (39%), Gaps = 81/408 (19%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R LRVG+I GG SAE +SL SA++++D + ID+ + N
Sbjct: 2 RKLRVGIIFGGRSAEHEVSLQSAKNIVDALDRSRFEPVLIGIDKQ--------GHWHLND 53
Query: 136 PADFDFKLES------------LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGED 178
P++F E+ LA G S+ ++ + +VD++FP +HG GED
Sbjct: 54 PSNFLLNQENPALIALNQSNRELAVVPGKASQQLVETSSQEMLGHVDVIFPIVHGTLGED 113
Query: 179 GGIQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
G +Q +L ++PFVG+ GS C DK + + G P L + +
Sbjct: 114 GCLQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFVTLTRATAARTG 170
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVEL 294
+ V KL + VKP GSS+GV+ V D + + + L D +V++E
Sbjct: 171 FAE--VRGKLGL---PLFVKPANQGSSVGVS---KVTDEAEYSAAVELALSFDTKVLIES 222
Query: 295 FLEGGSEFTAIVLD----VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
+ G E VL + SG C +V+ + ++Y KY+
Sbjct: 223 AVS-GREIECAVLGNEDAIASG--CGEIVV-----------------RSGFYSYDSKYID 262
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
P + IR A FQ LG AR+D +
Sbjct: 263 DTAAEVVVPANISVEASERIRALAVEAFQVLGCSGLARVDVFL----------------- 305
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
T+ G +L +IN + G + S + G ++S ++ +I A +
Sbjct: 306 TDSGEVLINEINSLPGFTRISMYPKLWQATGMTYSELVTRLIELALEK 353
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 180/471 (38%), Gaps = 136/471 (28%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P +A+ Q+V + + H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQEMLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 720
S CMDK I+K + R L TP V + + E+ K
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRATAARTGFAEVRGK 177
Query: 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
L L VKPA G S GV+++ D Y A+E L SF
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKVT---DEAEYSAAVELAL------SFD------------ 215
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
++L S + + EI V+G ++ S + V
Sbjct: 216 ------------TKVLIESAVSGR--------------EIECAVLGNEDAIASGCGEIVV 249
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 900
+ S + K+ T + P +S EA ++ + L G +R+D F+
Sbjct: 250 RSG--FYSYDSKYIDDTAAEVVVPAN--ISVEASERIRALAVEAFQVLGCSGLARVDVFL 305
Query: 901 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
D+GEVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 306 T-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVTRLIELALEK 353
>gi|418115187|ref|ZP_12752173.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 5787-06]
gi|419495854|ref|ZP_14035571.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA47461]
gi|421302860|ref|ZP_15753524.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA17484]
gi|353785271|gb|EHD65690.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 5787-06]
gi|379593940|gb|EHZ58751.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA47461]
gi|395901482|gb|EJH12418.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA17484]
Length = 347
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKQVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRRNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ +++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPDLIEHLVDLAKESF 339
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 112/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ ++ E A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAVMRRNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 308
>gi|419860705|ref|ZP_14383346.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387983099|gb|EIK56598.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 365
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 160/406 (39%), Gaps = 81/406 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ-------------------GDDLLVRCYYID 118
++V +I GG S+E +S SA +++ H+ G+ R +D
Sbjct: 16 IKVAIIYGGRSSEHSVSCVSAGAIMAHLDPQRYEVFPVGITHDGVWTVGESDPSRLKTVD 75
Query: 119 RNLNAYAIS---SAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRF 175
R + + S V NT + F+ SL A VD+VFP +HGRF
Sbjct: 76 RVMPEVQFTREVSLSVNPNTAGELRFEDGSLY--------------AKVDVVFPVLHGRF 121
Query: 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
GEDG IQ + E VP+VGTG + DK M+ +G +L+GSE E
Sbjct: 122 GEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEE 181
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVEL 294
V VKP R GSSIG++ V D S A + D +V+VE
Sbjct: 182 HKREL--------GLPVFVKPARGGSSIGISR---VADWSEWDAALSLAREHDSKVIVE- 229
Query: 295 FLEGGSEFTAIVLDVG--SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
+E + ++ G D V +P +++ +G ++ + + KYL
Sbjct: 230 -----AEIVGVEVECGVLERIDGSLVASVPAQLQDTDEG------EEGFYGFDTKYL-DD 277
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
V H P F I++ + F L AR+D +F+ T+
Sbjct: 278 VVTAHIPAPFDAETTALIQDLSLKAFTALSCRGLARVD-FFV----------------TD 320
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G S Q G ++ +L +I A +
Sbjct: 321 HGPVL-NEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQALHK 365
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 121/316 (38%), Gaps = 97/316 (30%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q L E GVPY G GV++S MDK T L L + K
Sbjct: 113 VFPVLHGRFGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEFT----KKLMAAEGLPVGK 168
Query: 698 DV--RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+V R E L + E +L VKPAR G S G++R+ D + + AL
Sbjct: 169 EVILRGSETLTE--------EHKRELGLPVF-VKPARGGSSIGISRVA---DWSEWDAAL 216
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
S +R H +++ ++
Sbjct: 217 ----------SLAREH--------------------DSKVIVEAE--------------- 231
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT----------PPP 865
VGV +CG + + S+ + +E +G G + P P
Sbjct: 232 -----IVGVEVECGVLERIDGSLVASVPAQLQDTDEGEEGFYGFDTKYLDDVVTAHIPAP 286
Query: 866 ASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+T + Q + L A AL G +R+D FV D+G VL E+NT+PG TP +
Sbjct: 287 FDAETTALI----QDLSLKAFTALSCRGLARVDFFVT-DHGPVL-NEINTMPGFTPIS-- 338
Query: 925 IHQALSEQPPMYPHQF 940
MYP F
Sbjct: 339 ----------MYPQVF 344
>gi|171741431|ref|ZP_02917238.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC
27678]
gi|283455223|ref|YP_003359787.1| D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1]
gi|171277045|gb|EDT44706.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
dentium ATCC 27678]
gi|283101857|gb|ADB08963.1| ddlA D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1]
Length = 378
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 125/300 (41%), Gaps = 38/300 (12%)
Query: 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222
+VD V P +HG +GEDG IQ + E NVP+VG G A DK+ + ++ G P
Sbjct: 102 HVDAVLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVFASAACMDKHYTKVLLAAAGIPVAP 161
Query: 223 SFLLQGSEV---------NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID 273
L + E+ L+ P + VKP+RAGSS GVT D
Sbjct: 162 GITLDARDCDAACAFAANGETMLAAVQAAGLRYP----LFVKPSRAGSSFGVTKVEREGD 217
Query: 274 SLKKAKGIILEGIDD-RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 332
+ + A + D RV+VE ++ E VL +G + P P E+ L +
Sbjct: 218 AAELAAAVFEASHHDWRVLVEQGID-AREIECAVLCPKAGDE--PRASWPGEIVLDKRAG 274
Query: 333 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 392
D D +++ KY+ + P P + +RE A F+ + +R+D
Sbjct: 275 GD----DQFYDFDSKYMDAEASHVEVPAALPQETLELVRETAKKAFKAVDGTGLSRVD-- 328
Query: 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
F +++ G ++ +IN + G S + G S+++++ T+I
Sbjct: 329 -------TFVTAD--------GKVMVNEINTMPGFTPISMYPKAWDATGVSYTDLISTLI 373
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q L E VPY G GV AS CMDK T + L I
Sbjct: 106 VLPVLHGPYGEDGTIQGLFEMMNVPYVGCGVFASAACMDKHYTKVLLAAAGIPVAPGITL 165
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCK----TLCVKPARDGCSTGVARL 742
D R + + + +Q L VKP+R G S GV ++
Sbjct: 166 DARDCDAACAFAANG--ETMLAAVQAAGLRYPLFVKPSRAGSSFGVTKV 212
Score = 40.0 bits (92), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
PA+ + E L+ ++ + A+ G SR+D FV D G+V++ E+NT+PG TP
Sbjct: 297 PAA-LPQETLELVRETAKKAFKAVDGTGLSRVDTFVTAD-GKVMVNEINTMPGFTP 350
>gi|317129522|ref|YP_004095804.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
gi|315474470|gb|ADU31073.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
Length = 371
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 156/390 (40%), Gaps = 56/390 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT--- 135
+VG+I GG S+E ISL SA+S+++ I + + ID+N Y + N
Sbjct: 13 KVGIIFGGKSSEHQISLQSAKSIIEAIDKNKYELVLIGIDKNGKWYLLDPNNYLRNMDNP 72
Query: 136 ------PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
P+D + L + + N+D++FP +HG +GEDG IQ +L
Sbjct: 73 KLIEMIPSDQRVNI-VLGEHDCFFTTPDGRSLGNIDVIFPILHGSYGEDGSIQGLLRLMG 131
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
PF+G + DK + +S+ G F + K+ N
Sbjct: 132 KPFIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKYFAYTKDRKGNIDYE------KVKENL 185
Query: 250 GK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIV 306
G V VKP GSS+G++ Y KK + E D+++V+E ++ G E V
Sbjct: 186 GTPVFVKPANQGSSVGISKVY----EKKKFYMAVDEAFRYDNKIVIEEEIK-GREIECAV 240
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
L + P+ LP EV D+ ++Y KY+ + V P
Sbjct: 241 LG-----NEDPIASLPGEVLFT----------DSFYSYDAKYINSGGVQLKVPAELDGDD 285
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ +++ A F+ L AR+D +FL T+ G + +IN + G
Sbjct: 286 VEKVKKEAIKAFKALQCNGVARVD-FFL----------------TKEGNLFVNEINTLPG 328
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHAC 456
+ S + G + +++ +I A
Sbjct: 329 FTKLSMYPKLWEVSGLPYKDLVNKMIALAI 358
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 103/432 (23%), Positives = 165/432 (38%), Gaps = 117/432 (27%)
Query: 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDAN----IT 547
++V +IFGG +SE Q+SL S ++ ++A + + L+ G+D N +
Sbjct: 12 KKVGIIFGGKSSEHQISLQSAKSI---IEAIDKNKYELVLI--------GIDKNGKWYLL 60
Query: 548 DPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHS 607
DP++ LR+ L IE I D+ R +V L +H
Sbjct: 61 DPNN------------YLRNMDNPKL---IEMIPSDQ-------RVNIV------LGEHD 92
Query: 608 WFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPG 667
F F D + N +F +HG GEDG++Q LL G P+ GP
Sbjct: 93 CF--FTTPDGRSLG------------NIDVIFPILHGSYGEDGSIQGLLRLMGKPFIGPS 138
Query: 668 VMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 727
V+ S MDK + L+ L I K +D +I +E + +
Sbjct: 139 VLGSAVSMDKEVSKKLLSEAG----LFIGKYFAYTKDRKG----NIDYEKVKENLGTPVF 190
Query: 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 787
VKPA G S G+++ VY K F A + E
Sbjct: 191 VKPANQGSSVGISK--------VYEK-----------KKFYMA--------------VDE 217
Query: 788 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL 847
F ++I+ + + EI V+G + SL V +S
Sbjct: 218 AFRYDNKIVIEEEIKGR--------------EIECAVLGNEDPIASLPGEVLFTDS--FY 261
Query: 848 SLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEV 907
S + K+ G+ L P + + ++K K+ ALQ G +R+D F+ + G +
Sbjct: 262 SYDAKYINSGGVQLKVPAE--LDGDDVEKVKKEAIKAFKALQCNGVARVDFFLTKE-GNL 318
Query: 908 LIIEVNTVPGMT 919
+ E+NT+PG T
Sbjct: 319 FVNEINTLPGFT 330
>gi|347525775|ref|YP_004832523.1| D-alanyl-alanine synthetase A [Lactobacillus ruminis ATCC 27782]
gi|345284734|gb|AEN78587.1| D-alanyl-alanine synthetase A [Lactobacillus ruminis ATCC 27782]
Length = 382
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 97/399 (24%), Positives = 167/399 (41%), Gaps = 56/399 (14%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCY-YIDRNLNAYAISSAQVYSN 134
+ L + L+ GG S+E +S SA +V D + D V + + + S +++
Sbjct: 4 KKLHIALLFGGNSSEHDVSKRSAHTVFDALDKDKYEVSVFMFTKQGFLLGNKDSMRIFDG 63
Query: 135 TPADF-------DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
P D D + SLSE ++D+ P IHG GEDG +Q +
Sbjct: 64 EPEDAVVAEAIKDVDFSNPLANIQSLSE-----VKDIDLFIPVIHGNMGEDGTVQSLFRL 118
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
N P++G+G + +FDK D + ++ I +++ E N+SE + K
Sbjct: 119 LNKPYIGSGIASSAVSFDK-DLTKQLLTYHGIRNTKYVVVTPE-NQSE----YTYEKCAA 172
Query: 248 NSGKVV-VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTA 304
G+ + VKP R GSS+G+ Y V + + K I +G D +V+VE + E
Sbjct: 173 ELGETLFVKPARQGSSVGI---YKVSNKEEFDKA-IQDGFHYDFKVLVEETIANPRE--- 225
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
+C VL +++ G++ + +DA ++Y K++ V + P P
Sbjct: 226 --------VECS--VLGNRDIKASKLGAIRIPAEDAFYDYNNKFVDASGVVFEIPVELPE 275
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+ I++ + F+ LG AR+D FL V F ++N +
Sbjct: 276 KLTKEIQQMSLDAFRVLGNRGLARMD--FLVDENDV---------------PYFGEVNTL 318
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463
G S Q + G S+ ++L +I A F + A
Sbjct: 319 PGFTNISLYPQLWAVSGISYKDLLDRLIQLAFDEFEDNA 357
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 630 LAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
L++ +FI V HG +GEDGT+QSL PY G G+ +S DK T L +
Sbjct: 89 LSEVKDIDLFIPVIHGNMGEDGTVQSLFRLLNKPYIGSGIASSAVSFDKDLTKQLLTYHG 148
Query: 689 DLGVLTINKDVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
+R + ++ TP + +E + +TL VKPAR G S G+ ++ E
Sbjct: 149 ----------IRNTKYVVVTPENQSEYTYEKCAAELGETLFVKPARQGSSVGIYKVSNKE 198
Query: 747 DL 748
+
Sbjct: 199 EF 200
>gi|408501898|ref|YP_006865817.1| D-alanine--D-alanine ligase [Bifidobacterium asteroides PRL2011]
gi|408466722|gb|AFU72251.1| D-alanine--D-alanine ligase [Bifidobacterium asteroides PRL2011]
Length = 400
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 155/373 (41%), Gaps = 72/373 (19%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
+ICGG S ER +S++S V ++ V + +D
Sbjct: 88 VICGGLSHERDVSISSGHRVQGFLEEAGWTVHVHDMD----------------------- 124
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
GSL + + D+V+P +HG GEDG I++VLE +P++G+ ++A R
Sbjct: 125 ---------GSLLPYLTDESTRPDLVWPLLHGANGEDGSIRDVLEMAELPYIGSRAKASR 175
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAG 260
A+ K A + G T S L S EL V + L + G + +KPT G
Sbjct: 176 TAWSKPIAKNVVRMAGLQTPHSVTLPESMFR--ELGVEPVIDMLLGSLGLPLFIKPTMGG 233
Query: 261 SSIGVTVAYGVIDSLKKAKGII-LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 319
S++G T+ V + + + +I D ++E + G+E + +L+ FD HP+V
Sbjct: 234 SAMGCTM---VTEQSQLTQALINCFAYGDVALIEQAVT-GTEVSVSILE----FDGHPLV 285
Query: 320 LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
L P E+ G+ D F R PT+ ++ P R ++ + A +
Sbjct: 286 LPPLEI-WTPSGTYD-------FEARSTPGPTE---FYVPARLDAKTTQAVSDAALTAHR 334
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
LGL D +R D F+ + G F + N+ GM TS L Q A
Sbjct: 335 ALGLRDISRTD--FIVDAQ---------------GQPQFLESNVAPGMTDTSLLPQSALA 377
Query: 440 VGFSHSNILRTII 452
G++ + ++
Sbjct: 378 AGYNLPELYTALV 390
>gi|331265947|ref|YP_004325577.1| D-ala,D-ala ligase [Streptococcus oralis Uo5]
gi|326682619|emb|CBZ00236.1| D-ala,D-ala ligase [Streptococcus oralis Uo5]
Length = 347
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 165/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWNKKIAPSSIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENH-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRHNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKQSF 339
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENHEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ + E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRHNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL + F
Sbjct: 320 MGISYPELIERLVDLAKQSF 339
>gi|218547549|ref|YP_002381340.1| D-alanine--D-alanine ligase [Escherichia fergusonii ATCC 35469]
gi|422806684|ref|ZP_16855115.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
gi|218355090|emb|CAQ87697.1| D-alanine:D-alanine ligase [Escherichia fergusonii ATCC 35469]
gi|324112495|gb|EGC06472.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
Length = 306
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 134/314 (42%), Gaps = 71/314 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 698 DVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R + E L +V + S L L VKP+R+G S G++++
Sbjct: 117 ITRTEFEKGLSDEVV----KQISALGLP-LIVKPSREGSSVGMSKV-------------- 157
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ NS A + F DE+L +
Sbjct: 158 -----VAENSVENALKL--------------AFQHDDEVLV-----------------EK 181
Query: 817 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
W+ E TV ++G+ ++PS+ ++ +G E K+ P S + E
Sbjct: 182 WLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---SGLEAEQ 233
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
K ++ L +G+ RID ++ D+G+ ++E NT PGMT +++ A Q
Sbjct: 234 ESILKSLVQKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 934 PMYPHQFFRKVLDL 947
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 137/313 (43%), Gaps = 60/313 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SLNS +VL ++ + ++AY + P D
Sbjct: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLR-----------EGGVDAYPVD--------PKD 44
Query: 139 FDF-KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D +L+S+ GF VF +HGR GEDG +Q +LE +P+ G+G
Sbjct: 45 VDVAQLKSM--GFQK--------------VFIALHGRGGEDGTLQGMLELLGLPYTGSGV 88
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A + DK + L G P + +E E LS+ V ++ ++VKP+
Sbjct: 89 MASAISMDKLRSKLLWQGAGLPVAPWVAITRTEF-EKGLSD-EVVKQISALGLPLIVKPS 146
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
R GSS+G++ +S++ A + + DD V+VE +L G EFT +L G + P
Sbjct: 147 REGSSVGMSKVVAE-NSVENALKLAFQH-DDEVLVEKWLS-GPEFTVAIL----GEEILP 199
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
S+ ++ ++Y KYL + + Y P + ++
Sbjct: 200 --------------SIRIQPAGTFYDYEAKYL-SDETQYFCPSGLEAEQESILKSLVQKA 244
Query: 378 FQRLGLCDFARID 390
+ LG + RID
Sbjct: 245 WTTLGCKGWGRID 257
>gi|417359291|ref|YP_002935106.2| D-alanine--D-alanine ligase family protein [Edwardsiella ictaluri
93-146]
gi|409033458|gb|ACR70871.2| D-alanine--D-alanine ligase family protein [Edwardsiella ictaluri
93-146]
Length = 367
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 159/376 (42%), Gaps = 54/376 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG++ GG S E +SL SA+++++ I V ID+ + + S Q Y N
Sbjct: 4 IRVGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQ-GYWHLCSGQDYLNHAH 62
Query: 138 D-----FDFKLESLAQGFGSLS-----EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
D + LA G++ + + ++D++FP +HG GEDG +Q +L+
Sbjct: 63 DPQHIALNHSERRLAVIPGAIQGQLIDSVSGEILPSLDVIFPIVHGTLGEDGCLQGMLKM 122
Query: 188 YNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
N+PFVG+ GS AC DK + G P L + ++ + + ++
Sbjct: 123 LNLPFVGSDVIGSAAC---MDKEVCKRLLRDAGLPITPFVTL--TRATQTHYNYETLRSQ 177
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
L + VKP GSS+GV D +A L D +V+VE +
Sbjct: 178 LGET---LFVKPANQGSSVGVNKVRNA-DEYHRAIADALR-FDHKVIVERGV-------- 224
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
+G +C +L EV Q SV ++ ++Y KY+ Q P
Sbjct: 225 ----IGHEIEC---AILGNEVA---QASVCGEIVLHSDFYSYDSKYISAQDAQVVVPAAM 274
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL-FTDI 421
V +R+ A FQ L AR+D VF ++E + E T+ FT+I
Sbjct: 275 APEVSERVRQTALRAFQALECRGLARVD---------VFVTAENEVIINEINTLPGFTNI 325
Query: 422 NLISGMEQTSFLFQQA 437
++ + Q S + QA
Sbjct: 326 SMYPKLWQASGISYQA 341
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 129/324 (39%), Gaps = 80/324 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG LQ +L+ +P+ G V+ S CMDK +
Sbjct: 101 VIFPIVHGTLGEDGCLQGMLKMLNLPFVGSDVIGSAACMDK----------------EVC 144
Query: 697 KDVRRKEDLLKTPIVDI---------WHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
K + R L TP V + + L S+L +TL VKPA G S GV ++ A++
Sbjct: 145 KRLLRDAGLPITPFVTLTRATQTHYNYETLRSQLG-ETLFVKPANQGSSVGVNKVRNADE 203
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
Y +A+ + L F+ V + +
Sbjct: 204 ---YHRAIADA-------------------------LRFDHKVIVERGVIGH-------- 227
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
EI ++G + S+ + + D S + K+ + P A
Sbjct: 228 -----------EIECAILGNEVAQASVCGEIVLH--SDFYSYDSKYISAQDAQVVVPAA- 273
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
M+ E ++ +Q AL+ G +R+D FV +N EV+I E+NT+PG T + ++
Sbjct: 274 -MAPEVSERVRQTALRAFQALECRGLARVDVFVTAEN-EVIINEINTLPGFT--NISMYP 329
Query: 928 ALSEQPPMYPHQFFRKVLDLGSER 951
L + + ++++L ER
Sbjct: 330 KLWQASGISYQALITQLIELALER 353
>gi|422669234|ref|ZP_16729083.1| D-alanyl-alanine synthetase A, partial [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330981592|gb|EGH79695.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 345
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 158/384 (41%), Gaps = 55/384 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S+E +SL SAR+V++ I + + +D+ A N
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64
Query: 140 DFKLESLAQGFGSL-----SEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
KL + + L +F E A +D+VFP IHG FGEDG +Q +L V
Sbjct: 65 RIKLSASGKPLSLLPGSVGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPN 248
PFVG + DK D + + + ITV F L +G ++ +E + D
Sbjct: 125 PFVGADVLSSAVCMDK-DVTKRLLRDAGITVAPFRVLSRGESLSFTEAA--------DQL 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ +KP GSS+GV+ V D A + L D +L +E G
Sbjct: 176 GLPMFIKPANQGSSVGVS---KVSDEAGFAAALALGFEFDH---KLLIEQGI-------- 221
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
VG +C VL +V++ G +V D + Y KYL Q P P + +
Sbjct: 222 VGREVEC--AVLGNVDVQVSVCG--EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSD 277
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+RE A ++ LG +R+D +F+ TE I+ ++N + G
Sbjct: 278 QVREVALQAYKVLGCAGLSRVD-FFV----------------TEGRDIIINEVNTLPGFT 320
Query: 429 QTSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 321 SISMYPKLWQASGLSYAELIHRLI 344
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ LL VP+ G V++S CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLSSAVCMDKDVTK---RLLRDAGITVAP 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
V + + L + E +L + +KPA G S GV+++
Sbjct: 157 FRVLSRGESLS------FTEAADQLGLP-MFIKPANQGSSVGVSKV 195
>gi|269101957|ref|ZP_06154654.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268161855|gb|EEZ40351.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 303
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 155/385 (40%), Gaps = 94/385 (24%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQG---DDLLVRCYYIDRNLNAYAISSAQVYSN 134
+R+G++ GG S+ER +SL S ++ I+ + + + YID ++ +
Sbjct: 1 MRIGVLYGGDSSEREVSLKSGTRIIAAIESLGHEAIHLDPRYIDLSMLGF---------- 50
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+KL D VF +HG GE G +Q +L+ +P++G
Sbjct: 51 ------YKL---------------------DKVFIALHGGMGESGHVQSLLDILQIPYIG 83
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS--EVNESELSNWFVTNKLDPNSGKV 252
+G A + +K G IT P L+Q + +V+ L + + V
Sbjct: 84 SGVLASAISLNKLKTKEIWQANGLITAPWVLVQKTMPQVDIMALCSEL--------TFPV 135
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVG 310
VVKP G SIGV A D+ + +L D V+VE F+ G E+T VL+ G
Sbjct: 136 VVKPLNQGCSIGVAKA----DNEVQLWDALLAAFEYDTEVLVEQFIV-GREYTCAVLN-G 189
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
PVV + +E F++ K+ TQ YH P + ++
Sbjct: 190 EAL---PVVQICSE---------------EFFDWNAKF-GTQSATYHCPSDLTAIEEQTM 230
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E +Q LG + RID TE + ++N I GM +
Sbjct: 231 QETILAAYQALGCRGWGRIDVLL-----------------TEHNDVYLIEMNTIPGMTER 273
Query: 431 SFLFQQASKVGFSHSNILRTIIGHA 455
S A++VG S+ ++ ++ HA
Sbjct: 274 SVFPMAAAQVGLSYEALIEQLLDHA 298
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 25/112 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HGG+GE G +QSLL+ +PY G GV+AS ++K+ T K
Sbjct: 56 VFIALHGGMGESGHVQSLLDILQIPYIGSGVLASAISLNKLKT----------------K 99
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLC--------VKPARDGCSTGVAR 741
++ + L+ P V + + ++ LC VKP GCS GVA+
Sbjct: 100 EIWQANGLITAPWVLV-QKTMPQVDIMALCSELTFPVVVKPLNQGCSIGVAK 150
>gi|237815687|ref|ZP_04594684.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
gi|237788985|gb|EEP63196.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
Length = 366
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 153/386 (39%), Gaps = 45/386 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSAQVYSN 134
+R+ ++ GG SAE +S+ SA +V++ + ++ R L + ++ A +
Sbjct: 19 MRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPS 78
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ A+ + A + A +DI+FP +HG GEDG +Q + + VP G
Sbjct: 79 SGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAG 138
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
G A DK A +++ G T S + EV + L+ G +
Sbjct: 139 CGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVP--------AFSALEQALGLPIF 190
Query: 254 VKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
+KP R GSS+GV D + G I DD+++ E F++ ++ D G
Sbjct: 191 IKPARQGSSVGVHKVVTEADYQAAMSDGFIY---DDKLLAEEFIQAREVECGVLEDEGGA 247
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ G + E ++Y KY+ P P V N IR
Sbjct: 248 L------------FVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRA 295
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG AR+D F +++ + I+ +IN I G S
Sbjct: 296 IAAKAFRVLGCDSMARVD---------FFVTADRR--------IVLNEINTIPGFTDMSM 338
Query: 433 LFQQASKVGFSHSNILRTIIGHACSR 458
+ + G S+ I+ ++ H +R
Sbjct: 339 YSKVMAVSGVSYPEIINRLVAHGLAR 364
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 108/294 (36%), Gaps = 82/294 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG +Q L + VP G G+ S +DK +A + + G+ T
Sbjct: 111 IFPVLHGLHGEDGAVQGLAQVARVPLAGCGIPGSANALDK---DIAKRLVNEAGLSTAKS 167
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+E+ V + L L +KPAR G S GV ++ D Y A+ +
Sbjct: 168 VTITREE------VPAFSALEQALGLPIF-IKPARQGSSVGVHKVVTEAD---YQAAMSD 217
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ + L+ E F++ E+
Sbjct: 218 GFIY-------------------DDKLLAEEFIQAREV---------------------- 236
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDIL--------SLEEKFQGGTGINLTPPPASIM 869
+CG + ++ V +G+I+ S + K+ G + P
Sbjct: 237 ---------ECGVLEDEGGALFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVP----- 282
Query: 870 STEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
E ++ + I IA L + +R+D FV D +++ E+NT+PG T
Sbjct: 283 -AELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTADR-RIVLNEINTIPGFT 334
>gi|418706126|ref|ZP_13266976.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410764195|gb|EKR34912.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Hebdomadis str. R499]
Length = 351
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDVDIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 733
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 850
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 156/385 (40%), Gaps = 56/385 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-----LNAYAISSAQVYS 133
++ + GG S E IS+ + + + V+ + ++ + Y +S S
Sbjct: 3 KIAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVS 62
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N+P D E + +G +S + + +VDIVF +HG GEDG IQ LE +P+
Sbjct: 63 NSP---DLFQEEFQKRYG-VSRTNQIFSLDVDIVFLGLHGGQGEDGTIQGFLEILGIPYT 118
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW--FVTNKLDPNSGK 251
G+G A A DK A+ + G P F E+++ E N V KL+
Sbjct: 119 GSGVLASAIAMDKTRANQIFLQSGQKVAPFF-----EIDKLEYLNSTDAVITKLETLGFP 173
Query: 252 VVVKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+KP GSS+ V Y + + LK+ +I E D +V+ + FL G E + VL+
Sbjct: 174 QFLKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLT-GIEVSCGVLER 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH--TPPRFPIVVI 367
+ L TE + F++ KY +Q H TP R +
Sbjct: 229 YRDGKFKKIALPATE----------IVPGGEFFDFESKY---KQGGSHEITPARISEQEM 275
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++E A + LG ++R D + H+ + N + GM
Sbjct: 276 KRVQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL------------------ETNTLPGM 317
Query: 428 EQTSFLFQQASKVGFSHSNILRTII 452
+TS + QQA G S + +I
Sbjct: 318 TETSLIPQQAKAAGISMEEVFSDLI 342
>gi|358462350|ref|ZP_09172483.1| D-alanine--D-alanine ligase [Frankia sp. CN3]
gi|357071857|gb|EHI81428.1| D-alanine--D-alanine ligase [Frankia sp. CN3]
Length = 318
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 154/381 (40%), Gaps = 81/381 (21%)
Query: 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID-RNLNAYAISSAQVYS 133
GRVL ++ GG S ER +SL S R + D ++ + V +D L A A +
Sbjct: 5 GRVL---VLAGGLSPEREVSLRSGRRLCDALERIAVDVEMRDVDGSTLPALA-------A 54
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
+ PA +V P +HG GEDG I+EVL+ Y +P+V
Sbjct: 55 DPPA----------------------------VVIPVLHGSSGEDGTIREVLDLYGLPYV 86
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KV 252
G ACR AFDK A + G T P+ L + +L + +++ G +
Sbjct: 87 GATPVACRAAFDKATAKATVGAAGIATPPAVTLPREAFH--DLGAAALIDRIVARLGLPL 144
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE--GIDDRVVVELFLEGGSEFTAIVLDVG 310
VVKP GS+ GV G ++ + ++ G D ++E + G E VLD G
Sbjct: 145 VVKPRAGGSAFGV----GFVEEAGQLAEALMTCFGYHDWALIERAVP-GVEIAVSVLDTG 199
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G PV L +V+++ +++Y +Y + A+H P R V+ +
Sbjct: 200 DG----PVAL----------PAVEIQPITGVYDYAARYT-SGATAFHIPARLGEDVLRAA 244
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
A LGL D +R D + ++ GT F ++N+ GM T
Sbjct: 245 AATAVTAHCVLGLRDLSRTD--------LIVDAN---------GTPQFLEVNVAPGMTDT 287
Query: 431 SFLFQQASKVGFSHSNILRTI 451
S G + + R +
Sbjct: 288 STWPMALHAAGLDLAVVCREL 308
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
LA + A V +HG GEDGT++ +L+ G+PY G +A + DK AT+ A A
Sbjct: 52 LAADPPAVVIPVLHGSSGEDGTIREVLDLYGLPYVGATPVACRAAFDK-ATAKATVGAA- 109
Query: 690 LGVLTINKDVRRKE---DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 739
G+ T +E DL ++D + ++L L VKP G + GV
Sbjct: 110 -GIATPPAVTLPREAFHDLGAAALID---RIVARLGLP-LVVKPRAGGSAFGV 157
>gi|226311631|ref|YP_002771525.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
gi|226094579|dbj|BAH43021.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
Length = 375
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 144/334 (43%), Gaps = 44/334 (13%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN------------- 120
G + +R+G+I GG S+E +SL +A S++ + + V Y+ +
Sbjct: 2 GNQKIRLGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQL 61
Query: 121 ---LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGE 177
+ A +S+ SN + +L ++ GSL E + D+VFP +HG FGE
Sbjct: 62 PDKIEALRLSAKTPVSNEATETGQEL-AVTSKSGSLFAMNEQM----DVVFPVVHGPFGE 116
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
DG IQ +LE N+P+VGTG A DK+ ++ G V L S+ + +
Sbjct: 117 DGTIQGLLELANIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDD 176
Query: 238 NWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL 296
V ++++ G VKP GSS+G+ A + LK A + + D R++VE F+
Sbjct: 177 ---VMDRIERELGYPCFVKPANMGSSVGINKAKNR-EELKHALDVAAK-FDRRLIVEEFV 231
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
+ L++G VL E+ G V ++ ++Y KY
Sbjct: 232 Q------VRELEIG--------VLGNEELMTSVVGEVIAAKE--FYDYEAKY-KGAGTEL 274
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARID 390
P P V I E A FQ L +R+D
Sbjct: 275 SIPAIVPEHVSEQIAEIAKQAFQALDGSGLSRVD 308
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 164/431 (38%), Gaps = 115/431 (26%)
Query: 496 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 555
+I+GG +SE +VSL + ++ + A N EVTP +
Sbjct: 10 IIYGGKSSEHEVSLRTAMSIMQAVDA-NKYEVTPVYV----------------------- 45
Query: 556 VWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIA 615
L S V T L IEA+ S+ + +L K S F
Sbjct: 46 --QLDGSWVTGETLAGQLPDKIEALRLSAKTPVSNEATETGQELAVTSKSGSLF------ 97
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
++NE + + VF VHG GEDGT+Q LLE +PY G GVMAS M
Sbjct: 98 -------AMNEQMDV-------VFPVVHGPFGEDGTIQGLLELANIPYVGTGVMASAVGM 143
Query: 676 DK-----VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
DK V L + +G+L + +D D+ + +L VKP
Sbjct: 144 DKWMMKTVFAQAGLPQVKYVGLL--RSQWEKGQD-------DVMDRIERELGYPCF-VKP 193
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790
A G S G+ + E+L AL+ F R LI E FV
Sbjct: 194 ANMGSSVGINKAKNREELK---HALDVAA------KFDRR-------------LIVEEFV 231
Query: 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 850
+ E+ +GV+G M S++ V + + E
Sbjct: 232 QVR-------------------------ELEIGVLGNEELMTSVVGEVIAAK--EFYDYE 264
Query: 851 EKFQG-GTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 909
K++G GT +++ +S + + KQ + AL G SR+D F + N ++ I
Sbjct: 265 AKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQ----ALDGSGLSRVDFFWDEKNDKLYI 320
Query: 910 IEVNTVPGMTP 920
EVNT+PG TP
Sbjct: 321 NEVNTMPGFTP 331
>gi|269794439|ref|YP_003313894.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
gi|269096624|gb|ACZ21060.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
Length = 400
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 163/395 (41%), Gaps = 50/395 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAISSA 129
RV L+ GG S E IS +A V+ I D V I R + + +AI+
Sbjct: 36 RVVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAITDG 95
Query: 130 QVYSNTPADFDFKLESLAQGFGSLSEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVL 185
++ A L LA G +L + +VD+VFP +HG FGEDG +Q +L
Sbjct: 96 RL-PEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGML 154
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
E +V +VG G A DK+ L ++ QG P ++ E + + VT ++
Sbjct: 155 ELADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRDAEA---VTARV 211
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFT 303
V VKP RAGSS+G++ +D L + E D +V+VE + G E
Sbjct: 212 AGLGLPVFVKPARAGSSLGIS----KVDDLADLPAAVAEARRHDPKVIVEAGIV-GREIE 266
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL G LP E+++ A +++ KYL Q V P
Sbjct: 267 CAVLGGRRGERAR--ASLPGEIQV-------TDTTHAFYDFEAKYLSEQSVELTCPADLS 317
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
++ +++ A F+ + +R+D VF TE G ++ +IN
Sbjct: 318 PELVAEVQDVAVRTFEAVSGEGLSRVD---------VF--------VTEAGEVVVNEINT 360
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S + + G ++ ++ ++ A R
Sbjct: 361 MPGFTPFSMYPRMWDRSGLPYAELITELVELALER 395
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 127/314 (40%), Gaps = 76/314 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL-NHLADLGVLTIN 696
VF +HG GEDGTLQ +LE V Y G GV+AS MDK L L +G T+
Sbjct: 136 VFPLLHGPFGEDGTLQGMLELADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVV 195
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARDGCSTGVARLCCAEDLTVYVKA 754
D +T+++ L VKPAR G S G++++ +DL A
Sbjct: 196 PPGEWDRDA---------EAVTARVAGLGLPVFVKPARAGSSLGISKV---DDLADLPAA 243
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+ E +R H P++++ V
Sbjct: 244 VAE----------ARRHD--------PKVIVEAGIV------------------------ 261
Query: 815 SRWVEITVGVIGKCG--SMHSLMPSVTVKESGDIL-SLEEKFQGGTGINLTPPPASIMST 871
R +E V + G+ G + SL + V ++ E K+ + LT P + +S
Sbjct: 262 GREIECAV-LGGRRGERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCP--ADLSP 318
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E + + + A+ EG SR+D FV + GEV++ E+NT+PG TP +
Sbjct: 319 ELVAEVQDVAVRTFEAVSGEGLSRVDVFVT-EAGEVVVNEINTMPGFTPFS--------- 368
Query: 932 QPPMYPHQFFRKVL 945
MYP + R L
Sbjct: 369 ---MYPRMWDRSGL 379
>gi|307707045|ref|ZP_07643842.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321]
gi|307617571|gb|EFN96741.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321]
Length = 347
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 165/383 (43%), Gaps = 55/383 (14%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKQVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V S+++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-SKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+V E G I + + +D
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLV----EQGVNAREIEVGLLGNYDAKS 227
Query: 318 VVLLPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
LP EV KD A ++Y KY+ ++ P + V+ +R+ A
Sbjct: 228 T--LPGEV-----------VKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAVMRQNAET 273
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F+ +G +R D ++ T+ G + ++N + G Q S
Sbjct: 274 AFRAIGGLGLSRCDFFY-----------------TDKGEVFLNELNTMPGFTQWSMYPLL 316
Query: 437 ASKVGFSHSNILRTIIGHACSRF 459
+G S+ ++ ++ A F
Sbjct: 317 WDNMGISYPELIERLVDLAKESF 339
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTSKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNYDA-KSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GEV + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEVFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|282853666|ref|ZP_06263003.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes J139]
gi|282583119|gb|EFB88499.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes J139]
Length = 365
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 164/401 (40%), Gaps = 64/401 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ +I GG S+E IS SA +V+ I + +++ IS ++ A
Sbjct: 4 IHCAVIFGGMSSEHSISCLSAANVVAAIDAERF---------DVSGVGISPQGIWVRYGA 54
Query: 138 DFDFKLESLAQ---------GFGSLSEFAEHLA-----ANVD---IVFPTIHGRFGEDGG 180
D L Q S+ + E NVD +VFP +HG FGEDG
Sbjct: 55 DEILALPGTGQLPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGT 114
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE V +VG G A DK+ + +S+ G + P +++ E E +
Sbjct: 115 IQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLK 174
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
++L+ + VKP R GSSIG++ + L+ A + E D +V++E + G
Sbjct: 175 AASRLEY---PLFVKPARGGSSIGISRVTSP-EHLETAIEMAREH-DSKVLIEQGIR-GR 228
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTP 359
E V+D G P +P G + V + D +++ KYL +Q A
Sbjct: 229 EIECSVIDGRHG--AAPRASVP--------GEIVVHDPDGFYDFEAKYLSGEQKASVQAH 278
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
V ++E A FQ LG ARID + P G +
Sbjct: 279 ANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTPD-----------------GAVYVN 321
Query: 420 DINLISGMEQTSF--LFQQASKVGFSHSNILRTIIGHACSR 458
+ N + G ++S L QAS G +++ I+ +I A R
Sbjct: 322 EPNTMPGFTRSSGFPLMWQAS--GMTYAQIVSELIELALER 360
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 137/331 (41%), Gaps = 82/331 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 695
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 696 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+D +ED +LK S+L+ L VKPAR G S G++R+ E L +
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLE-YPLFVKPARGGSSIGISRVTSPEHLETAI 209
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ +R H +++ +
Sbjct: 210 E-------------MAREHD----------------------------------SKVLIE 222
Query: 813 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 870 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 922
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 923 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
>gi|269217857|ref|ZP_06161711.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269212792|gb|EEZ79132.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 281
Score = 83.2 bits (204), Expect = 6e-13, Method: Composition-based stats.
Identities = 82/279 (29%), Positives = 122/279 (43%), Gaps = 48/279 (17%)
Query: 165 DIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGF-----I 219
D+V+P IHG GEDG +Q +LE VP+VGT ACR A DK A +S G +
Sbjct: 22 DVVWPLIHGSTGEDGSLQSLLELVGVPYVGTPPAACRIASDKAVAGAVLSTAGLNVPDSV 81
Query: 220 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAK 279
T+P L + EV ++ + + + D +VVKP + GS++GVT+ L +A
Sbjct: 82 TIPQKLFR--EVGVGQVLD-LIKARFD---FPLVVKPAQGGSALGVTIVASAA-GLPRAM 134
Query: 280 GIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKD 339
+ D+R VE ++EG +E V+ GS P L P E+ D
Sbjct: 135 -VDCFAYDERARVEQYIEG-AEVAVSVVQTGS----EPRALPPVEIA-----------AD 177
Query: 340 AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTH 399
++Y +Y + Y P R +++E A LGL +R D
Sbjct: 178 GPYDYDARYF-AGRAEYFVPARLSEEDTAAVKEAAERAHLVLGLRYLSRTDIIL------ 230
Query: 400 VFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ G D+N+ GM +TS LF QA+
Sbjct: 231 -----------DDAGRAWILDVNVAPGMTETS-LFPQAA 257
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 72/294 (24%), Positives = 108/294 (36%), Gaps = 57/294 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V+ +HG GEDG+LQSLLE GVPY G A + DK L+ L +
Sbjct: 24 VWPLIHGSTGEDGSLQSLLELVGVPYVGTPPAACRIASDKAVAGAVLSTAG----LNVPD 79
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V + L + V +L L VKPA+ G + GV + A L +A+ +
Sbjct: 80 SVTIPQKLFREVGVGQVLDLIKARFDFPLVVKPAQGGSALGVTIVASAAGLP---RAMVD 136
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
C E E ++E E+ S T
Sbjct: 137 CFAY-------------------DERARVEQYIEGAEVAVSVVQT--------------- 162
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
GS +P V + G + ++ G P S T A+ +
Sbjct: 163 -----------GSEPRALPPVEIAADGP-YDYDARYFAGRAEYFVPARLSEEDTAAVKEA 210
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
+R L+ L L SR D ++ D G I++VN PGMT +++ A ++
Sbjct: 211 AERAHLV---LGLRYLSRTDIILD-DAGRAWILDVNVAPGMTETSLFPQAATAD 260
>gi|227894248|ref|ZP_04012053.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047]
gi|227863968|gb|EEJ71389.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047]
Length = 360
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 157/392 (40%), Gaps = 53/392 (13%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ ++VGLI GG S+E +S+ S ++ I + V +I N +A
Sbjct: 3 KKMQVGLIFGGNSSEYEVSIVSGHNIYKAIDKEKFDVHPIWI-TNEGYFADEKESFKVLE 61
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+ K +L E E+L +D+ FP +HG GEDG +Q + N PFVG
Sbjct: 62 DPSYQVKNPHKVHNISNLIEL-ENLP-EIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGD 119
Query: 196 GSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
A DK + + G +I++ F + ++ N +L V KL +
Sbjct: 120 DVLAAAVTMDKEFTKILAQRVGVPVADWISIKRF--EYNDKNNDKLDYEKVAEKLGRD-- 175
Query: 251 KVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ VKP+ GSS+G VT A +LK+A DD+V+VE + G TA++
Sbjct: 176 -MFVKPSNQGSSVGVSHVTNAAEYTAALKEAF-----KYDDKVLVEETVPGTEVETAVL- 228
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
G D P+V ++ K + + Y KY P P +I
Sbjct: 229 ----GND-KPIVAGVGQI---------TNAKGSFYTYENKYDDNSTSKLQIPADLPKEII 274
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+++R A +++ ARID P G ++ T++N + G
Sbjct: 275 DTVRANARKVYEVTECSGMARIDSMLTPG-----------------GKVVLTEVNALPGF 317
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G ++ ++ +I RF
Sbjct: 318 TNISMYPKLFEEAGVPYTELITRLIEAGMDRF 349
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 133/333 (39%), Gaps = 59/333 (17%)
Query: 622 HSINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
H+I+ I+L + VF VHG +GEDG LQ L P+ G V+A+ MDK T
Sbjct: 74 HNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAVTMDKEFT 133
Query: 681 SLALNHLADLGVLTIN-KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 739
+ +GV + ++R E K + ++ KL + + VKP+ G S GV
Sbjct: 134 KILAQR---VGVPVADWISIKRFEYNDKNNDKLDYEKVAEKL-GRDMFVKPSNQGSSVGV 189
Query: 740 ARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS 799
+ + A + Y AL+E
Sbjct: 190 SHVTNAAE---YTAALKEAF---------------------------------------- 206
Query: 800 QSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI 859
K D+++ + E+ V+G + + + +T G + E K+ +
Sbjct: 207 ----KYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQIT-NAKGSFYTYENKYDDNSTS 261
Query: 860 NLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L P + + E +D + + + G +RID+ + G+V++ EVN +PG T
Sbjct: 262 KLQIP--ADLPKEIIDTVRANARKVYEVTECSGMARIDSML-TPGGKVVLTEVNALPGFT 318
Query: 920 PSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ ++ L E+ + + ++++ G +RF
Sbjct: 319 --NISMYPKLFEEAGVPYTELITRLIEAGMDRF 349
>gi|308188188|ref|YP_003932319.1| D-alanine--D-alanine ligase [Pantoea vagans C9-1]
gi|308058698|gb|ADO10870.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1]
Length = 365
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 167/404 (41%), Gaps = 59/404 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA+++L+ I V ID+ + ++ A + +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQ-GHWRLNDASNFLLNAE 62
Query: 135 TPA--DFDFKLESLAQGFGS-----LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E +A G+ ++ H + +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALIALNHAAEDVALVPGNTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
++PFVG+ + DK + G P L ++ ++L V +
Sbjct: 123 ASLPFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAP--WLSVTQAQRAQLDAEAVIARF-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKK--AKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ +KP GSS+GV+ +DS+++ A + D +V++E ++ G E
Sbjct: 179 -GLPLFIKPANQGSSVGVS----KVDSIEEFDAALALAFSFDRKVLIEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C VV+ DA ++Y KY+ P
Sbjct: 233 VLGNDAPEASPCGEVVV-----------------HDAFYSYDTKYISESGAQTVVPAAIA 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
++IR+ A F L AR+D VF +++ G I+ ++N
Sbjct: 276 AETSDAIRDVAIKAFSALECFGMARVD---------VFLTND--------GEIIVNEVNT 318
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ G S + G S+ +++ +I A R ++ S
Sbjct: 319 LPGFTNISMYPKLWQAAGLSYQDLISRLIDLAIERHQQASTLKS 362
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 107/467 (22%), Positives = 174/467 (37%), Gaps = 128/467 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V ++FGG ++E +VSL S N+ L+A + LL ID N D+S+
Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNI---LEAIDKTRFDVVLLG--IDKQGHWRLN----DASN 56
Query: 554 RVVWSL-PYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
++ + P + L H E+V LV G + T
Sbjct: 57 FLLNAENPALIALNHAAEDVA-------------------------LVPGNTQQQIIT-- 89
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
RH+ + ++ +F VHG +GEDG+LQ LL +P+ G V+ S
Sbjct: 90 --------RHNAHPLSQID-----VIFPIVHGTLGEDGSLQGLLRMASLPFVGSDVLGSA 136
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------- 725
MDK K + R L P + + ++L +
Sbjct: 137 VSMDK----------------DFTKRLLRDAGLNVAPWLSVTQAQRAQLDAEAVIARFGL 180
Query: 726 -LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784
L +KPA G S GV+++ E+ + AL SF R ++L
Sbjct: 181 PLFIKPANQGSSVGVSKVDSIEE---FDAALALAF------SFDR------------KVL 219
Query: 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG 844
I + KG EI V+G S V V ++
Sbjct: 220 IEQGI----------------------KGR----EIECAVLGNDAPEASPCGEVVVHDA- 252
Query: 845 DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN 904
S + K+ +G P A ++ E D + +AL+ G +R+D F+ D
Sbjct: 253 -FYSYDTKYISESGAQTVVPAA--IAAETSDAIRDVAIKAFSALECFGMARVDVFLTND- 308
Query: 905 GEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
GE+++ EVNT+PG T + ++ L + + +++DL ER
Sbjct: 309 GEIIVNEVNTLPGFT--NISMYPKLWQAAGLSYQDLISRLIDLAIER 353
>gi|424815008|ref|ZP_18240159.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227]
gi|325496028|gb|EGC93887.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227]
Length = 309
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 134/314 (42%), Gaps = 71/314 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 61 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 119
Query: 698 DVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
R + E L +V + S L L VKP+R+G S G++++
Sbjct: 120 ITRTEFEKGLSDEVV----KQISALGLP-LIVKPSREGSSVGMSKV-------------- 160
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ NS A + F DE+L +
Sbjct: 161 -----VAENSVENALKL--------------AFQHDDEVLV-----------------EK 184
Query: 817 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873
W+ E TV ++G+ ++PS+ ++ +G E K+ P S + E
Sbjct: 185 WLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---SGLEAEQ 236
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
K ++ L +G+ RID ++ D+G+ ++E NT PGMT +++ A Q
Sbjct: 237 ESILKSLVQKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAA--RQA 293
Query: 934 PMYPHQFFRKVLDL 947
M Q ++L+L
Sbjct: 294 GMSFSQLVVRILEL 307
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 137/313 (43%), Gaps = 60/313 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SLNS +VL ++ + ++AY + P D
Sbjct: 7 KIAVLLGGTSAEREVSLNSGAAVLAGLR-----------EGGVDAYPVD--------PKD 47
Query: 139 FDF-KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
D +L+S+ GF VF +HGR GEDG +Q +LE +P+ G+G
Sbjct: 48 VDVAQLKSM--GFQK--------------VFIALHGRGGEDGTLQGMLELLGLPYTGSGV 91
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A + DK + L G P + +E E LS+ V ++ ++VKP+
Sbjct: 92 MASAISMDKLRSKLLWQGAGLPVAPWVAITRTEF-EKGLSD-EVVKQISALGLPLIVKPS 149
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
R GSS+G++ +S++ A + + DD V+VE +L G EFT +L G + P
Sbjct: 150 REGSSVGMSKVVAE-NSVENALKLAFQH-DDEVLVEKWLS-GPEFTVAIL----GEEILP 202
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
S+ ++ ++Y KYL + + Y P + ++
Sbjct: 203 --------------SIRIQPAGTFYDYEAKYL-SDETQYFCPSGLEAEQESILKSLVQKA 247
Query: 378 FQRLGLCDFARID 390
+ LG + RID
Sbjct: 248 WTTLGCKGWGRID 260
>gi|419449457|ref|ZP_13989453.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 4075-00]
gi|379622075|gb|EHZ86711.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 4075-00]
Length = 347
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 167/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKIGDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ +++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPDLIERLVDLAKESF 339
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P + +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--IGDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPDLIERLVDLAKESF 339
>gi|50842843|ref|YP_056070.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
gi|335051324|ref|ZP_08544250.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
409-HC1]
gi|335053710|ref|ZP_08546541.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
434-HC2]
gi|342211420|ref|ZP_08704145.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
CC003-HC2]
gi|387503739|ref|YP_005944968.1| D-alanine--D-alanine ligase [Propionibacterium acnes 6609]
gi|407935770|ref|YP_006851412.1| D-alanine--D-alanine ligase [Propionibacterium acnes C1]
gi|422456994|ref|ZP_16533656.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
gi|422495428|ref|ZP_16571715.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
gi|50840445|gb|AAT83112.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
gi|313813315|gb|EFS51029.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
gi|315105985|gb|EFT77961.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
gi|333766379|gb|EGL43685.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
434-HC2]
gi|333767213|gb|EGL44471.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
409-HC1]
gi|335277784|gb|AEH29689.1| D-alanine--D-alanine ligase [Propionibacterium acnes 6609]
gi|340766964|gb|EGR89489.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
CC003-HC2]
gi|407904351|gb|AFU41181.1| D-alanine--D-alanine ligase [Propionibacterium acnes C1]
Length = 365
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 164/401 (40%), Gaps = 64/401 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ V +I GG S+E IS SA +V+ I + +++ IS ++ A
Sbjct: 4 IHVAVIFGGMSSEHSISCLSAANVVAAIDAERF---------DVSGVGISPEGIWVRYGA 54
Query: 138 DFDFKLESLAQ---------GFGSLSEFAE-----HLAANVD---IVFPTIHGRFGEDGG 180
D L Q S+ + E NVD +VFP +HG FGEDG
Sbjct: 55 DEILALPGTGQLPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGT 114
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE V +VG G A DK+ + +S+ G + P +++ E E +
Sbjct: 115 IQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLK 174
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
++L+ V VKP R GSSIG++ + L+ A + E D +V++E + G
Sbjct: 175 AASRLEY---PVFVKPARGGSSIGISRVTSP-EHLETAIEMAREH-DSKVLIEQGIR-GR 228
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTP 359
E V+D G P +P G + V + D +++ KYL +Q A
Sbjct: 229 EIECSVIDGRHG--AAPRASVP--------GEIVVHDPDGFYDFEAKYLSGEQKASVQAH 278
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+++ A FQ LG ARID + P G +
Sbjct: 279 ANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-----------------GAVYVN 321
Query: 420 DINLISGMEQTSF--LFQQASKVGFSHSNILRTIIGHACSR 458
+ N + G ++S L QAS G +++ I+ +I A R
Sbjct: 322 EPNTMPGFTRSSGFPLMWQAS--GMTYAQIVSELIELALER 360
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 136/331 (41%), Gaps = 82/331 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 695
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 696 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+D +ED +LK S+L+ VKPAR G S G++R+ E L +
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLEYPVF-VKPARGGSSIGISRVTSPEHLETAI 209
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ +R H +++ +
Sbjct: 210 E-------------MAREHD----------------------------------SKVLIE 222
Query: 813 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 870 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 922
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 923 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
>gi|302872435|ref|YP_003841071.1| D-alanine--D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
gi|302575294|gb|ADL43085.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
Length = 364
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 167/398 (41%), Gaps = 67/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
L+V ++ GG S E IS+ SA+S++ ++ + + I + +Y+
Sbjct: 4 LKVAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKE------GKWLLYTGKIE 57
Query: 138 DFD-----FKLESLA---QGFGSLSEFAEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEK 187
D D F +E + +L + ++ A ++D+VFP +HG GEDG +Q +LE
Sbjct: 58 DLDSKWTQFSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLEL 117
Query: 188 YNVPFVGTG---SRACR-QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS---NWF 240
N+P+VG G S C +AF K A LE QG V V ++E S ++F
Sbjct: 118 SNIPYVGCGVLSSAICMDKAFAKKLALLEGIPQGHFLV---------VYKNEYSAKKDYF 168
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
+ S V VKP +GSS+G++ A D + L D +V++E +
Sbjct: 169 IRRIESEFSYPVFVKPANSGSSVGISKAKDREDLVLAIHEAFL--YDTKVLIEQAI-NAR 225
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL F P ++P+ RE ++Y KY+ P
Sbjct: 226 EIECAVLGNDEVFVSEPGEIIPS------------RE---FYSYEAKYIDDSS-ELIIPA 269
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R P V I++ A+ +++ C AR+D +F+ T+ + F +
Sbjct: 270 RLPKEVTEEIKDLAARIYKIFECCGMARVD-FFVDKDTN---------------KVYFNE 313
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+N I G S + G +S ++ +I A +
Sbjct: 314 VNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 132/343 (38%), Gaps = 99/343 (28%)
Query: 632 KENQAT------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLAL 684
K+N+AT VF +HG GEDGT+Q LLE +PY G GV++S CMDK A LAL
Sbjct: 85 KDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGCGVLSSAICMDKAFAKKLAL 144
Query: 685 NHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 734
G L + K+ +RR E P+ VKPA G
Sbjct: 145 LEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVF----------------VKPANSG 188
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 794
S G+++ EDL + I E F+ +
Sbjct: 189 SSVGISKAKDREDLV---------------------------------LAIHEAFLYDTK 215
Query: 795 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------S 848
+L Q+ N EI V+G V V E G+I+ S
Sbjct: 216 VLI-EQAINAR-------------EIECAVLGN--------DEVFVSEPGEIIPSREFYS 253
Query: 849 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
E K+ + + P TE + RI I + G +R+D FV+ D +V
Sbjct: 254 YEAKYIDDSSELIIPARLPKEVTEEIKDLAARIYKI---FECCGMARVDFFVDKDTNKVY 310
Query: 909 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
EVNT+PG T ++ ++ L E + Q K++ L E+
Sbjct: 311 FNEVNTIPGFT--SISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
>gi|311740529|ref|ZP_07714356.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311304049|gb|EFQ80125.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 353
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 157/390 (40%), Gaps = 52/390 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR-------NLNAYAISSAQV 131
RV +I GG S E +S SA ++++H+ + V I R I +
Sbjct: 6 RVAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVM 65
Query: 132 YSNTP-ADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
+P A+ L+ A+G F ++++ L A VD+VFP +HG FGEDG +Q + E
Sbjct: 66 PEVSPGAELTLSLDPNAKGQFHNVTDGT--LFAEVDVVFPILHGPFGEDGTVQGLFELSG 123
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG-SEVNESELSNWFVTNKLDPN 248
+P+VG G A DK ++ P +L+G +E++E E +
Sbjct: 124 LPYVGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQQLGL------- 176
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
V VKP R GSSIGV+ + A + LE D++++VE + G E VL
Sbjct: 177 --PVFVKPARGGSSIGVS-KVTTWEEFPAAVDLALED-DEKILVEPEIV-GKEVEIGVLH 231
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G L V G D E + + KYL V P F +
Sbjct: 232 YADG-------TLLASVPALLAGIDDSDE--GFYGFDTKYL-DNVVTAEIPAPFAPELTE 281
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+R+ A F+ L +R+D + S ++ +IN + G
Sbjct: 282 KLRDMAIRAFEALNCEGLSRVDFFVTKDSVYI------------------NEINTLPGFT 323
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S Q + G + +L +I A ++
Sbjct: 324 PISMYPQVLAASGVEYPALLEALIEQALAK 353
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 129/322 (40%), Gaps = 74/322 (22%)
Query: 622 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 681
H++ + A+ + VF +HG GEDGT+Q L E G+PY GPGV+AS MDK T
Sbjct: 87 HNVTDGTLFAEVD--VVFPILHGPFGEDGTVQGLFELSGLPYVGPGVLASSVGMDKEFTK 144
Query: 682 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
L ADL V E +LK ++ + +L VKPAR G S GV++
Sbjct: 145 KVLAA-ADLPV--------APEVILKG-RTELSEDEKQQLGLPVF-VKPARGGSSIGVSK 193
Query: 742 LCCAEDLTVYVK-ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800
+ E+ V ALE + ++IL +
Sbjct: 194 VTTWEEFPAAVDLALE----------------------------------DDEKILVEPE 219
Query: 801 STNKNADRLMWKGNSRWVEITVGVIGKC-----GSMHSLMPSVTVKESGDILSLEEKFQG 855
K E+ +GV+ S+ +L+ + + G + K+
Sbjct: 220 IVGK--------------EVEIGVLHYADGTLLASVPALLAGIDDSDEG-FYGFDTKYLD 264
Query: 856 GTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915
P P + TE L R AL EG SR+D FV D+ V I E+NT+
Sbjct: 265 NVVTAEIPAPFAPELTEKLRDMAIR---AFEALNCEGLSRVDFFVTKDS--VYINEINTL 319
Query: 916 PGMTPSTVLIHQALSEQPPMYP 937
PG TP + + Q L+ YP
Sbjct: 320 PGFTPIS-MYPQVLAASGVEYP 340
>gi|2738587|gb|AAC46067.1| D-alanine: D-alanine ligase [Buchnera aphidicola]
Length = 306
Score = 83.2 bits (204), Expect = 7e-13, Method: Composition-based stats.
Identities = 90/378 (23%), Positives = 154/378 (40%), Gaps = 83/378 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG +ER IS+ S ++L + + NAYAI +
Sbjct: 4 KIAVLLGGILSERKISIKSGYAILQSL-----------LRSGFNAYAIDTR--------- 43
Query: 139 FDFKLESLA-QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
DF + L QGF D + +HG GEDG IQ +LE N+P+ G+G
Sbjct: 44 -DFPIMQLKKQGF--------------DSAYIALHGTGGEDGSIQGILEYLNIPYTGSGI 88
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ + DK+ L +P LQ ++++ S ++ K+ VV+KP
Sbjct: 89 MSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISKYTYS--YILKKILKLKFPVVIKPN 146
Query: 258 RAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
AGSSIG+T+ +IDS+ A + +++E FL+ G+E+T +L+
Sbjct: 147 NAGSSIGITIVNHPDLLIDSINLAF-----NYSNNIIIEKFLK-GTEYTVSILN------ 194
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
VL P + + K+ ++Y KY+ + Y P +++
Sbjct: 195 --KKVLPP----------IKIITKNNFYDYSSKYIES-STEYICPSGLNYQKEEELKKIV 241
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+ + LG RID ++ K+ W +IN I GM S +
Sbjct: 242 EIAWNSLGCKGCGRIDAIL---------DNKDKF----W----LLEINTIPGMTHRSLVP 284
Query: 435 QQASKVGFSHSNILRTII 452
+ K S N++ I+
Sbjct: 285 MASKKYRISFVNLILKIL 302
Score = 68.6 bits (166), Expect = 2e-08, Method: Composition-based stats.
Identities = 70/299 (23%), Positives = 125/299 (41%), Gaps = 65/299 (21%)
Query: 628 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 687
++L K+ + +IA+HG GEDG++Q +LE +PYTG G+M+S +DK T L L
Sbjct: 48 MQLKKQGFDSAYIALHGTGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSL 107
Query: 688 ADLGVLTINKDVR-RKEDLLKTPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCA 745
+ L + D+ +K+D+ K I L L+ K + +KP G S G+
Sbjct: 108 S----LRVLPDIYLQKKDISKYTYSYI---LKKILKLKFPVVIKPNNAGSSIGIT----- 155
Query: 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
++ P + D I + +N
Sbjct: 156 --------------------------------------IVNHPDLLIDSINLAFNYSNNI 177
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
KG E TV ++ K ++P + + + K+ + + P
Sbjct: 178 IIEKFLKG----TEYTVSILNK-----KVLPPIKIITKNNFYDYSSKYIESSTEYICPSG 228
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ E L K+ +E+ N+L +G RIDA ++ + + ++E+NT+PGMT +++
Sbjct: 229 LNYQKEEEL---KKIVEIAWNSLGCKGCGRIDAILD-NKDKFWLLEINTIPGMTHRSLV 283
>gi|422605886|ref|ZP_16677898.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. mori str.
301020]
gi|330889540|gb|EGH22201.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. mori str.
301020]
Length = 363
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 158/390 (40%), Gaps = 55/390 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S+E +SL SAR+V++ I + + +D+ A N
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64
Query: 140 DFKLESLAQGFGSL-----SEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
KL + + L +F E A +D+VFP IHG FGEDG +Q VL V
Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL--QGSEVNESELSNWFVTNKLDPN 248
PFVG A DK D + + + I V F++ +G ++ ++ +
Sbjct: 125 PFVGADVLASAACMDK-DVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQL-------- 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ VKP GSS+GV+ V D + L D +L +E G
Sbjct: 176 GLPMFVKPANQGSSVGVS---KVSDEAGFVAALALGFEFDH---KLLIEQGI-------- 221
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
VG +C VL + ++ G +V D + Y KYL Q P FP + +
Sbjct: 222 VGREVEC--AVLGNFDAQVSVCG--EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSD 277
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+RE A ++ LG +R+D F ++T+ I+ ++N + G
Sbjct: 278 QVREVALQAYKVLGCAGLSRVD----------FFVTDTR-------DIIINEVNTLPGFT 320
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G +++ ++ +I A R
Sbjct: 321 SISMYPKLWQASGLTYAELIHRLIVLALER 350
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 122/318 (38%), Gaps = 70/318 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ +L VP+ G V+AS CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGVLRMLAVPFVGADVLASAACMDKDVTK---RLLRDAGIAVAP 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V + + L + + ++L + VKPA G S GV+++ D +V AL
Sbjct: 157 FMVLSRGETLS------FADAATQLGLP-MFVKPANQGSSVGVSKVS---DEAGFVAAL- 205
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
A G E D L Q
Sbjct: 206 -------------ALGF-----------------EFDHKLLIEQGIVGR----------- 224
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMSTEA 873
E+ V+G + S+ V + + + + K+ G + P PA +
Sbjct: 225 --EVECAVLGNFDAQVSVCGEVIAND--EFYAYDTKYLNGDQARIAIPAEFPADLS---- 276
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
D+ ++ L G SR+D FV D +++I EVNT+PG T ++ ++ L +
Sbjct: 277 -DQVREVALQAYKVLGCAGLSRVDFFVT-DTRDIIINEVNTLPGFT--SISMYPKLWQAS 332
Query: 934 PMYPHQFFRKVLDLGSER 951
+ + +++ L ER
Sbjct: 333 GLTYAELIHRLIVLALER 350
>gi|315613579|ref|ZP_07888486.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296]
gi|315314270|gb|EFU62315.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296]
Length = 347
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRHNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ +++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPDLIEHLVDLAKQSF 339
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + E A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAVMRHNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 308
>gi|306824762|ref|ZP_07458106.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432973|gb|EFM35945.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 347
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 129/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|424895389|ref|ZP_18318963.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM2297]
gi|393179616|gb|EJC79655.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM2297]
Length = 358
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 153/390 (39%), Gaps = 53/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYAISSAQVYS 133
LR+ ++ GG SAE +S+ SA +V+ + + +I R L+++A A
Sbjct: 8 LRIAVLFGGRSAEHEVSILSATNVMAALAPEKYDAIPVFITREGQWLLSSFA-DGALAAP 66
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
++ + + ++ A H A +DI+FP +HG GEDG +Q V E VP
Sbjct: 67 SSGTEICLVPGGRGRAMAIPADSAPHELARIDILFPVLHGPHGEDGSVQGVAEVARVPLA 126
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK-- 251
G G A DK A + G + + + LD G+
Sbjct: 127 GCGILGSAAALDKDIAKRLLRAAGLPVARAITIHEG-----------ASPSLDALEGELG 175
Query: 252 --VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS-EFTAIVLD 308
+ +KP R GSS+GV + + G D ++ E F+ G EF+ +
Sbjct: 176 LPLFIKPARQGSSVGVAKVHASQEFAAALTGGFRH--DRTLLAEEFIAGREIEFSVLEDA 233
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G F P ++P ++ ++Y KY+ A P P V
Sbjct: 234 AGELFVSRPGEIVPADMH-------------GFYSYDAKYIDENGAALKVPADLPPDVEA 280
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
++R+ A+ F+ +G AR+D +FL T+ L ++N I G
Sbjct: 281 AMRDTAARAFRAVGCDGMARVD-FFL----------------TDDMRFLVNELNTIPGFT 323
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G ++ I+ ++ H +R
Sbjct: 324 DISMYSKAMAASGVGYAEIIDRLVDHGLAR 353
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 107/282 (37%), Gaps = 58/282 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG++Q + E VP G G++ S +DK +A L G L + +
Sbjct: 100 LFPVLHGPHGEDGSVQGVAEVARVPLAGCGILGSAAALDK---DIAKRLLRAAG-LPVAR 155
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ E +P +D L +L L +KPAR G S GVA++ +++ +
Sbjct: 156 AITIHEG--ASPSLD---ALEGELGLP-LFIKPARQGSSVGVAKVHASQEFAAALT---- 205
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
F L+ E F+ EI FS A L SR
Sbjct: 206 -------GGFRH-----------DRTLLAEEFIAGREIEFS--VLEDAAGELFV---SRP 242
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI MH S + K+ G L P EA
Sbjct: 243 GEIV------PADMHGFY------------SYDAKYIDENGAALKVPADLPPDVEA--AM 282
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ A+ +G +R+D F+ D+ L+ E+NT+PG T
Sbjct: 283 RDTAARAFRAVGCDGMARVDFFLT-DDMRFLVNELNTIPGFT 323
>gi|289426939|ref|ZP_06428663.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes J165]
gi|354607323|ref|ZP_09025293.1| hypothetical protein HMPREF1003_01860 [Propionibacterium sp.
5_U_42AFAA]
gi|386024318|ref|YP_005942623.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
gi|422385813|ref|ZP_16465938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3]
gi|422431386|ref|ZP_16508264.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
gi|422449444|ref|ZP_16526169.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
gi|422480983|ref|ZP_16557386.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
gi|422483489|ref|ZP_16559878.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
gi|422488280|ref|ZP_16564609.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
gi|422490381|ref|ZP_16566696.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
gi|422498151|ref|ZP_16574423.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
gi|422501955|ref|ZP_16578200.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
gi|422505912|ref|ZP_16582135.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
gi|422507298|ref|ZP_16583502.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
gi|422513740|ref|ZP_16589863.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
gi|422534701|ref|ZP_16610625.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
gi|422551882|ref|ZP_16627673.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
gi|422555875|ref|ZP_16631637.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
gi|422568294|ref|ZP_16643912.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
gi|289159879|gb|EFD08059.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes J165]
gi|313807118|gb|EFS45613.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
gi|313819314|gb|EFS57028.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
gi|313819963|gb|EFS57677.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
gi|313823244|gb|EFS60958.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
gi|313824968|gb|EFS62682.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
gi|314924802|gb|EFS88633.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
gi|314960640|gb|EFT04742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
gi|314978058|gb|EFT22152.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
gi|314986219|gb|EFT30311.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
gi|314989565|gb|EFT33656.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
gi|315084861|gb|EFT56837.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
gi|315086034|gb|EFT58010.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
gi|315088247|gb|EFT60223.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
gi|327327929|gb|EGE69703.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3]
gi|327443970|gb|EGE90624.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
gi|328754950|gb|EGF68566.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
gi|332675776|gb|AEE72592.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
gi|353557438|gb|EHC26807.1| hypothetical protein HMPREF1003_01860 [Propionibacterium sp.
5_U_42AFAA]
Length = 365
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 164/401 (40%), Gaps = 64/401 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ V +I GG S+E IS SA +V+ I + +++ IS ++ A
Sbjct: 4 IHVAVIFGGMSSEHSISCLSAANVVAAIDAERF---------DVSGVGISPEGIWVRYGA 54
Query: 138 DFDFKLESLAQ---------GFGSLSEFAE-----HLAANVD---IVFPTIHGRFGEDGG 180
D L Q S+ + E NVD +VFP +HG FGEDG
Sbjct: 55 DEILALPGTGQLPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGT 114
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE V +VG G A DK+ + +S+ G + P +++ E E +
Sbjct: 115 IQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAILK 174
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
++L+ V VKP R GSSIG++ + L+ A + E D +V++E + G
Sbjct: 175 AASRLEY---PVFVKPARGGSSIGISRVTSP-EHLETAIEMAREH-DSKVLIEQGIR-GR 228
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTP 359
E V+D G P +P G + V + D +++ KYL +Q A
Sbjct: 229 EIECSVIDGRHG--AAPRASVP--------GEIVVHDPDGFYDFEAKYLSGEQKASVQAH 278
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+++ A FQ LG ARID + P G +
Sbjct: 279 ANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-----------------GAVYVN 321
Query: 420 DINLISGMEQTSF--LFQQASKVGFSHSNILRTIIGHACSR 458
+ N + G ++S L QAS G +++ I+ +I A R
Sbjct: 322 EPNTMPGFTRSSGFPLMWQAS--GMTYAQIVSELIELALER 360
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 137/328 (41%), Gaps = 76/328 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 695
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+D +ED + I+ + S+L+ VKPAR G S G++R+ E L ++
Sbjct: 160 VRDHEWRED--RNAIL----KAASRLEYPVF-VKPARGGSSIGISRVTSPEHLETAIE-- 210
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
+R H +++ +
Sbjct: 211 -----------MAREHD----------------------------------SKVLIEQGI 225
Query: 816 RWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
R EI VI G+ G+ S+ + V + E K+ G AS+ +
Sbjct: 226 RGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQAHA 279
Query: 873 ALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST--VLI 925
LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+ L+
Sbjct: 280 NLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGFPLM 338
Query: 926 HQALSEQPPMYPHQFFRKVLDLGSERFL 953
QA M Q ++++L ER L
Sbjct: 339 WQASG----MTYAQIVSELIELALERPL 362
>gi|295130895|ref|YP_003581558.1| D-ala D-ala ligase N-terminal domain protein, partial
[Propionibacterium acnes SK137]
gi|417929313|ref|ZP_12572697.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK182]
gi|422387625|ref|ZP_16467737.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2]
gi|422392367|ref|ZP_16472437.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1]
gi|422426194|ref|ZP_16503118.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
gi|422462221|ref|ZP_16538845.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
gi|422478606|ref|ZP_16555025.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
gi|422486227|ref|ZP_16562583.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
gi|422518955|ref|ZP_16595023.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
gi|422522213|ref|ZP_16598243.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
gi|422527598|ref|ZP_16603588.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
gi|422530182|ref|ZP_16606146.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
gi|422537025|ref|ZP_16612913.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
gi|422560633|ref|ZP_16636320.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
gi|291376113|gb|ADD99967.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK137]
gi|313771885|gb|EFS37851.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
gi|313809610|gb|EFS47346.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
gi|313829929|gb|EFS67643.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
gi|314972902|gb|EFT16999.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
gi|314975674|gb|EFT19769.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
gi|314984142|gb|EFT28234.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
gi|315080938|gb|EFT52914.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
gi|315095733|gb|EFT67709.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
gi|327330066|gb|EGE71819.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2]
gi|327442699|gb|EGE89353.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
gi|327443902|gb|EGE90556.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
gi|328761412|gb|EGF74938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1]
gi|340773436|gb|EGR95928.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK182]
gi|456738482|gb|EMF63049.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes FZ1/2/0]
Length = 365
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 164/401 (40%), Gaps = 64/401 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ V +I GG S+E IS SA +V+ I + +++ IS ++ A
Sbjct: 4 IHVAVIFGGMSSEHSISCLSAANVVAAIDAERF---------DVSGVGISPEGIWVRYGA 54
Query: 138 DFDFKLESLAQ---------GFGSLSEFAE-----HLAANVD---IVFPTIHGRFGEDGG 180
D L Q S+ + E NVD +VFP +HG FGEDG
Sbjct: 55 DEILALPGTGQLPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGT 114
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE V +VG G A DK+ + +S+ G + P +++ E E +
Sbjct: 115 IQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLK 174
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
++L+ V VKP R GSSIG++ + L+ A + E D +V++E + G
Sbjct: 175 AVSRLEY---PVFVKPARGGSSIGISRVTSP-EHLETAIEMAREH-DSKVLIEQGIR-GR 228
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTP 359
E V+D G P +P G + V + D +++ KYL +Q A
Sbjct: 229 EIECSVIDGRHG--AAPRASVP--------GEIVVHDPDGFYDFEAKYLSGEQKASVQAH 278
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+++ A FQ LG ARID + P G +
Sbjct: 279 ANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-----------------GAVYVN 321
Query: 420 DINLISGMEQTSF--LFQQASKVGFSHSNILRTIIGHACSR 458
+ N + G ++S L QAS G +++ I+ +I A R
Sbjct: 322 EPNTMPGFTRSSGFPLMWQAS--GMTYAQIVSELIELALER 360
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 136/331 (41%), Gaps = 82/331 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 695
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 696 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+D +ED +LK S+L+ VKPAR G S G++R+ E L +
Sbjct: 160 VRDHEWREDRNAVLKA---------VSRLEYPVF-VKPARGGSSIGISRVTSPEHLETAI 209
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ +R H +++ +
Sbjct: 210 E-------------MAREHD----------------------------------SKVLIE 222
Query: 813 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 870 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 922
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 923 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
>gi|429084641|ref|ZP_19147641.1| D-alanine--D-alanine ligase B [Cronobacter condimenti 1330]
gi|426546328|emb|CCJ73682.1| D-alanine--D-alanine ligase B [Cronobacter condimenti 1330]
Length = 306
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 137/325 (42%), Gaps = 77/325 (23%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L +E VFIA+HG GEDGTLQ LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL----CVKPARDGCSTGVARLCCA 745
L V RR IV+ E T K + L VKP+R+G S G++++ A
Sbjct: 109 LPVAPWVALERRD-------IVNGLSE-TQKARIAALGLPVIVKPSREGSSVGMSKVDSA 160
Query: 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
+ LT ALE L FE E+L
Sbjct: 161 DALT---HALE---------------------------LAFE---HDSEVLV-------- 179
Query: 806 ADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 180 ---------EKWLSGPEFTVAILGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFC 225
Query: 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
P +AL + + L G+ R+D + D GE ++EVNT PGMT S
Sbjct: 226 PAGLDADREQALQALVMKAWRV---LGCRGWGRVDVMQDSD-GEFYLLEVNTAPGMT-SH 280
Query: 923 VLIHQALSEQPPMYPHQFFRKVLDL 947
L+ A + +P Q ++L+L
Sbjct: 281 SLVPMAARQAGMSFP-QLVVRILEL 304
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 147/376 (39%), Gaps = 79/376 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SL S +VL ++ D ++AYAI + T +
Sbjct: 4 KIAVLLGGSSAEREVSLQSGSAVLAGLK-----------DAGVDAYAIDPRDICVTTLKE 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+GF D VF +HGR GEDG +Q LE +P+ G+G
Sbjct: 53 ---------EGF--------------DKVFIALHGRGGEDGTLQGTLEYLGLPYTGSGVM 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV--NESELSNWFVTNKLDPNSGKVVVKP 256
A DK L G P L+ ++ SE + P V+VKP
Sbjct: 90 ASAITMDKLRTKLLWQGAGLPVAPWVALERRDIVNGLSETQKARIAALGLP----VIVKP 145
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
+R GSS+G++ D+L A + E D V+VE +L G EFT +L G +
Sbjct: 146 SREGSSVGMSKVDSA-DALTHALELAFEH-DSEVLVEKWLS-GPEFTVAIL----GEEIL 198
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
P S+ ++ ++Y KYL + + Y P +++
Sbjct: 199 P--------------SIRIQPAGVFYDYEAKYL-SDETQYFCPAGLDADREQALQALVMK 243
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
++ LG + R+D V S+ G ++N GM S +
Sbjct: 244 AWRVLGCRGWGRVD---------VMQDSD--------GEFYLLEVNTAPGMTSHSLVPMA 286
Query: 437 ASKVGFSHSNILRTII 452
A + G S ++ I+
Sbjct: 287 ARQAGMSFPQLVVRIL 302
>gi|62290178|ref|YP_221971.1| D-alanyl-alanine synthetase A [Brucella abortus bv. 1 str. 9-941]
gi|82700100|ref|YP_414674.1| D-alanyl-alanine synthetase A [Brucella melitensis biovar Abortus
2308]
gi|189024413|ref|YP_001935181.1| D-alanyl-alanine synthetase A [Brucella abortus S19]
gi|260546722|ref|ZP_05822461.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
gi|260755006|ref|ZP_05867354.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870]
gi|260758222|ref|ZP_05870570.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292]
gi|260762049|ref|ZP_05874392.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59]
gi|260884017|ref|ZP_05895631.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68]
gi|261214261|ref|ZP_05928542.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya]
gi|297248570|ref|ZP_06932288.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196]
gi|376272999|ref|YP_005151577.1| D-alanine--D-alanine ligase [Brucella abortus A13334]
gi|423166639|ref|ZP_17153342.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI435a]
gi|423170987|ref|ZP_17157662.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI474]
gi|423172931|ref|ZP_17159602.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI486]
gi|423178376|ref|ZP_17165020.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI488]
gi|423180417|ref|ZP_17167058.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI010]
gi|423183549|ref|ZP_17170186.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI016]
gi|423185511|ref|ZP_17172125.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI021]
gi|423188646|ref|ZP_17175256.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI259]
gi|62196310|gb|AAX74610.1| DdlA, D-alanine--D-alanine ligase A [Brucella abortus bv. 1 str.
9-941]
gi|82616201|emb|CAJ11247.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase
[Brucella melitensis biovar Abortus 2308]
gi|189019985|gb|ACD72707.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19]
gi|260095772|gb|EEW79649.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
gi|260668540|gb|EEX55480.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292]
gi|260672481|gb|EEX59302.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59]
gi|260675114|gb|EEX61935.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870]
gi|260873545|gb|EEX80614.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68]
gi|260915868|gb|EEX82729.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya]
gi|297175739|gb|EFH35086.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196]
gi|363400605|gb|AEW17575.1| D-alanine-D-alanine ligase A [Brucella abortus A13334]
gi|374538321|gb|EHR09829.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI474]
gi|374544123|gb|EHR15601.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI435a]
gi|374544450|gb|EHR15927.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI486]
gi|374545157|gb|EHR16620.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI488]
gi|374547948|gb|EHR19400.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI010]
gi|374548377|gb|EHR19825.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI016]
gi|374559208|gb|EHR30597.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI259]
gi|374560221|gb|EHR31604.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 1 str. NI021]
Length = 353
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 153/386 (39%), Gaps = 45/386 (11%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSAQVYSN 134
+R+ ++ GG SAE +S+ SA +V++ + ++ R L + ++ A +
Sbjct: 6 MRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPS 65
Query: 135 TPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ A+ + A + A +DI+FP +HG GEDG +Q + + VP G
Sbjct: 66 SGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAG 125
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVV 253
G A DK A +++ G T S + EV + L+ G +
Sbjct: 126 CGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVP--------AFSALEQALGLPIF 177
Query: 254 VKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
+KP R GSS+GV D + G I DD+++ E F++ ++ D G
Sbjct: 178 IKPARQGSSVGVHKVVTEADYQAAMSDGFIY---DDKLLAEEFIQAREVECGVLEDEGGA 234
Query: 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ G + E ++Y KY+ P P V N IR
Sbjct: 235 L------------FVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRA 282
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG AR+D F +++ + I+ +IN I G S
Sbjct: 283 IAAKAFRVLGCDSMARVD---------FFVTADRR--------IVLNEINTIPGFTDMSM 325
Query: 433 LFQQASKVGFSHSNILRTIIGHACSR 458
+ + G S+ I+ ++ H +R
Sbjct: 326 YSKVMAVSGVSYPEIINRLVAHGLAR 351
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 108/294 (36%), Gaps = 82/294 (27%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDG +Q L + VP G G+ S +DK +A + + G+ T
Sbjct: 98 IFPVLHGLHGEDGAVQGLAQVARVPLAGCGIPGSANALDK---DIAKRLVNEAGLSTAKS 154
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+E+ V + L L +KPAR G S GV ++ D Y A+ +
Sbjct: 155 VTITREE------VPAFSALEQALGLPIF-IKPARQGSSVGVHKVVTEAD---YQAAMSD 204
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ + L+ E F++ E+
Sbjct: 205 GFIY-------------------DDKLLAEEFIQAREV---------------------- 223
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDIL--------SLEEKFQGGTGINLTPPPASIM 869
+CG + ++ V +G+I+ S + K+ G + P
Sbjct: 224 ---------ECGVLEDEGGALFVSRAGEIVPAESHCFYSYDAKYIDADGTEIKVP----- 269
Query: 870 STEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
E ++ + I IA L + +R+D FV D +++ E+NT+PG T
Sbjct: 270 -AELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTADR-RIVLNEINTIPGFT 321
>gi|296132694|ref|YP_003639941.1| D-alanine--D-alanine ligase [Thermincola potens JR]
gi|296031272|gb|ADG82040.1| D-alanine/D-alanine ligase [Thermincola potens JR]
Length = 365
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 162/403 (40%), Gaps = 52/403 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY-SNTPA 137
RV +I GG S E +SL SA SVL + + + I R Y +SS + SN
Sbjct: 5 RVAVIFGGKSGEHEVSLASANSVLQALNKEKYEIIPIKISREGKWYILSSLNTFDSNIKC 64
Query: 138 DFDFKLESLAQGFGSLSEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
+ + +L E +VD+V P +HG FGEDG +Q +LE N+P+V
Sbjct: 65 EAAILADPTGDNLVNLQEKEPGQIFFTRESVDVVLPVLHGTFGEDGTLQGLLELANIPYV 124
Query: 194 GTGSRACRQAFDK-----YDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
G G A DK A + + ++T FL + E ++ + + T P
Sbjct: 125 GCGVAASSVGMDKAMMKAMFAQHNLPQGKYLT---FLRKEWEKDQDPICDEIETALGYP- 180
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
V VKP GSS+G++ A D L KA + D +VVVE +
Sbjct: 181 ---VFVKPANLGSSVGISKAANR-DELVKAMHLACL-YDRKVVVEENI------------ 223
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
+G + VL E E G ++ + ++Y KY+ + P +N
Sbjct: 224 --NGREIEVAVLGNDEPEASIAG--EIVPCNDFYDYEAKYI-SGTSELKIPAPLDDKTMN 278
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+R+ A F+ + +R+D +F+ T G IL +IN + G
Sbjct: 279 EVRKLAVKAFKAIDGAGLSRVD-FFIKKDT---------------GEILINEINTLPGFT 322
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSH 471
+ S + + G + +L +I A R + +V S
Sbjct: 323 EISMYPKLWAATGLPYDKLLDRLIELAIERHQDKNRNKTVYSE 365
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 122/295 (41%), Gaps = 63/295 (21%)
Query: 628 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK--VATSLALN 685
I +E+ V +HG GEDGTLQ LLE +PY G GV AS MDK + A +
Sbjct: 88 IFFTRESVDVVLPVLHGTFGEDGTLQGLLELANIPYVGCGVAASSVGMDKAMMKAMFAQH 147
Query: 686 HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745
+L LT +R++ + + PI D E+ + L VKPA G S G+++
Sbjct: 148 NLPQGKYLTF---LRKEWEKDQDPICD---EIETALGYPVF-VKPANLGSSVGISKAANR 200
Query: 746 EDLTVYVKALE-ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
++L VKA+ CL + R
Sbjct: 201 DEL---VKAMHLACL-------YDR----------------------------------- 215
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
+++ + N EI V V+G S+ + D E K+ GT P
Sbjct: 216 ---KVVVEENINGREIEVAVLGNDEPEASIAGEIV--PCNDFYDYEAKYISGTSELKIPA 270
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
P + + +++ ++ A+ G SR+D F+ D GE+LI E+NT+PG T
Sbjct: 271 P---LDDKTMNEVRKLAVKAFKAIDGAGLSRVDFFIKKDTGEILINEINTLPGFT 322
>gi|325980958|ref|YP_004293360.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
gi|325530477|gb|ADZ25198.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
Length = 305
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 150/374 (40%), Gaps = 82/374 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S ++VLD L+R S YS PA+
Sbjct: 8 KVAVLLGGRSAEREVSLQSGQAVLDA------LIR-------------SEVDAYSFDPAE 48
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + L QGF D F +HGRFGEDG IQ VLE +P+ G+G
Sbjct: 49 QALE-DLLRQGF--------------DRAFIALHGRFGEDGTIQGVLEWMRLPYTGSGVM 93
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
+ A DK+ L G I P ++L S+ N E+S ++VKP R
Sbjct: 94 SSALAMDKWRTKLLWQAVG-IPSPRYVLLHSDSNFEEVSELL--------GLPLIVKPAR 144
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS+IG++ D L + + D V+ E F+ G E T +L G P+
Sbjct: 145 EGSTIGLSKVTHKNDLLPAYE--LAAQYDALVLAEEFIV-GKELTVAIL----GETPLPI 197
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
V + EL ++Y+ KY+ + Y P + I+ A +
Sbjct: 198 VRIEITGEL--------------YDYQAKYV-SNDTRYFCPSGLSDELELEIQAQALQAY 242
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG + R+D T+ G F ++N GM S + A
Sbjct: 243 KVLGCHGWGRVDLIL-----------------TQTGQFYFLEVNTSPGMTGHSLVPMAAK 285
Query: 439 KVGFSHSNILRTII 452
G S +++ I+
Sbjct: 286 TAGISFEDLVMRIL 299
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 119/301 (39%), Gaps = 90/301 (29%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L ++ FIA+HG GEDGT+Q +LE +PYTG GVM+S MDK T L +
Sbjct: 54 LLRQGFDRAFIALHGRFGEDGTIQGVLEWMRLPYTGSGVMSSALAMDKWRTKLLWQAVG- 112
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWH-----ELTSKLQCKTLCVKPARDGCSTGVARLCC 744
+ +P + H E S+L L VKPAR+G + G++++
Sbjct: 113 ----------------IPSPRYVLLHSDSNFEEVSELLGLPLIVKPAREGSTIGLSKVTH 156
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
DL +P + ++ V +E +
Sbjct: 157 KNDL-------------LPAYELAAQ---------------YDALVLAEEFIVGK----- 183
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
E+TV ++G+ + +P V ++ +G++ + K+ P
Sbjct: 184 --------------ELTVAILGE-----TPLPIVRIEITGELYDYQAKYVSNDTRYFCP- 223
Query: 865 PASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGEVLIIEVNTVPGM 918
S +S E +E+ A ALQ G+ R+D + G+ +EVNT PGM
Sbjct: 224 --SGLSDEL------ELEIQAQALQAYKVLGCHGWGRVD-LILTQTGQFYFLEVNTSPGM 274
Query: 919 T 919
T
Sbjct: 275 T 275
>gi|71733971|ref|YP_276049.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|416014936|ref|ZP_11562653.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
str. B076]
gi|416028845|ref|ZP_11571734.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422404977|ref|ZP_16482025.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422592395|ref|ZP_16667001.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|71554524|gb|AAZ33735.1| D-alanine--D-alanine ligase A [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320325604|gb|EFW81666.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327112|gb|EFW83126.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330879137|gb|EGH13286.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330989504|gb|EGH87607.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 363
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 158/390 (40%), Gaps = 55/390 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S+E +SL SAR+V++ I + + +D+ A N
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64
Query: 140 DFKLESLAQGFGSL-----SEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
KL + + L +F E A +D+VFP IHG FGEDG +Q VL V
Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL--QGSEVNESELSNWFVTNKLDPN 248
PFVG A DK D + + + I V F++ +G ++ ++ +
Sbjct: 125 PFVGADVLASAACMDK-DVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQL-------- 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ VKP GSS+GV+ V D + L D +L +E G
Sbjct: 176 GLPMFVKPANQGSSVGVS---KVSDEAGFVAALALGFEFDH---KLLIEQGI-------- 221
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
VG +C VL + ++ G +V D + Y KYL Q P FP + +
Sbjct: 222 VGREVEC--AVLGNFDAQVSVCG--EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSD 277
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+RE A ++ LG +R+D F ++T+ I+ ++N + G
Sbjct: 278 QVREVALQAYKVLGCAGLSRVD----------FFVTDTR-------DIIINEVNTLPGFT 320
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G +++ ++ +I A R
Sbjct: 321 SISMYPKLWQASGLTYAELIHRLIVLALER 350
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 122/318 (38%), Gaps = 70/318 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ +L VP+ G V+AS CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGVLRMLAVPFVGADVLASAACMDKDVTK---RLLRDAGIAVAP 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V + + L + + ++L + VKPA G S GV+++ D +V AL
Sbjct: 157 FMVLSRGETLS------FADAATQLGLP-MFVKPANQGSSVGVSKV---SDEAGFVAAL- 205
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
A G E D L Q
Sbjct: 206 -------------ALGF-----------------EFDHKLLIEQGIVGR----------- 224
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMSTEA 873
E+ V+G + S+ V + + + + K+ G + P PA +
Sbjct: 225 --EVECAVLGNFDAQVSVCGEVIAND--EFYAYDTKYLNGDQARIAIPAEFPADLS---- 276
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
D+ ++ L G SR+D FV D +++I EVNT+PG T ++ ++ L +
Sbjct: 277 -DQVREVALQAYKVLGCAGLSRVDFFVT-DTRDIIINEVNTLPGFT--SISMYPKLWQAS 332
Query: 934 PMYPHQFFRKVLDLGSER 951
+ + +++ L ER
Sbjct: 333 GLTYAELIHRLIVLALER 350
>gi|386859425|ref|YP_006272131.1| D-alanine--D-alanine ligase [Borrelia crocidurae str. Achema]
gi|384934306|gb|AFI30979.1| D-alanine--D-alanine ligase [Borrelia crocidurae str. Achema]
Length = 364
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 161/359 (44%), Gaps = 51/359 (14%)
Query: 82 LICGGPSAERGISLNSARSVLDHI-QGDDLLVRCYYIDRNLNAYAI-----SSAQVYSNT 135
LI GG S E ISL SA + + + D V ++D+ + + SSA++
Sbjct: 7 LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSVFVDKVTGIWYLLDSVPSSAELIKRH 66
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
S+ F + + +D++FP IHGR GEDG IQ ++ ++P VG
Sbjct: 67 TT-------SIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGA 119
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSEVNESELSNWFVTNKLDPNSGKVV 253
G + +KY + + K I V SF+ + + E + NKL+ V+
Sbjct: 120 GILGSAISINKYFCKV-LLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNY---PVI 175
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP+ GSSIG+ VAY V + + I E D VVVE F++ A++
Sbjct: 176 VKPSVLGSSIGINVAYNV----SQIEKYIEEAFEYDLTVVVEKFIKAREIECAVI----- 226
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVIN 368
G D + P E+ +Q D IF +Y KY +P + ++ P + +
Sbjct: 227 GND-QIKIFTPGEIIVQ----------DFIFYDYDAKYSTIPGDSIVFNIPAHLAMKHLL 275
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
I+E A L ++ L L ARID + + T++ +E +T G FTDI++ + M
Sbjct: 276 DIKEYAFLTYKYLELRGMARID-FLISKDTNLLYVNEV---NTIPG---FTDISMFAKM 327
>gi|322375680|ref|ZP_08050192.1| D-alanine--D-alanine ligase [Streptococcus sp. C300]
gi|321279388|gb|EFX56429.1| D-alanine--D-alanine ligase [Streptococcus sp. C300]
Length = 347
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 165/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKIAPSSIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRHNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIEHLVDLAKQSF 339
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + E A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAVMRHNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 308
>gi|417677398|ref|ZP_12326805.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17545]
gi|418155656|ref|ZP_12792383.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA16242]
gi|418157966|ref|ZP_12794682.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA16833]
gi|418226053|ref|ZP_12852681.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae NP112]
gi|332072839|gb|EGI83320.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17545]
gi|353819905|gb|EHE00094.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA16242]
gi|353824414|gb|EHE04588.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA16833]
gi|353881250|gb|EHE61064.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae NP112]
Length = 347
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 164/387 (42%), Gaps = 63/387 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA +V+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAENVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQED- 62
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + A + +VFP +HG GEDG +Q LE +P+VG +
Sbjct: 63 RLMTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSS 122
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V ++++ V KL + V KP+ G
Sbjct: 123 LAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---AYPVFTKPSNMG 176
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L++A + + D RV+VE G +
Sbjct: 177 SSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR---- 213
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ +R+
Sbjct: 214 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAVMRQ 269
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 270 NAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 312
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+ ++ ++ A F
Sbjct: 313 YPLLWDNMGISYPELIERLVDLAKESF 339
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 125/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKL-----AYPVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|414563583|ref|YP_006042544.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338846648|gb|AEJ24860.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 348
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 164/388 (42%), Gaps = 65/388 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD- 140
L+ GG SAER +S+ SA SV+ I V+ Y+I + Q +S+ PA +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAIDYTKFFVKTYFISQTGQ---FIKTQEFSSQPAATER 64
Query: 141 ------FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+LE + E A +VFP +HG GEDG IQ LE +P+VG
Sbjct: 65 LMTNDTIRLEQQIRPSDVYEEGA--------VVFPVLHGPMGEDGSIQGFLEVLKMPYVG 116
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
T + A DK + G V + ++G +++ + S +
Sbjct: 117 TNILSSSVAMDKIATKRVLESAGIPQVAYTVYIEGQDLDRC------LAETEAALSYPIF 170
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP GSS+G++ A +S ++ + IL + D R+++E +G S A ++VG
Sbjct: 171 VKPANMGSSVGISKA----ESEEELRAAILLALKYDSRILIE---QGVS---AREIEVG- 219
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
+L T+V+ G V V+ D ++YR KY+ ++ P + S+R
Sbjct: 220 -------LLGNTDVKSTLPGEV-VKNVD-FYDYRAKYIDN-EITMTIPAAIDESAMTSMR 269
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
A F+ +G C +R D +FL G I ++N + G Q S
Sbjct: 270 IYAETAFKAIGACGLSRCD-FFLGQD----------------GQIYLNELNTMPGFTQWS 312
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSRF 459
+G S++ ++ ++ A F
Sbjct: 313 MYPLLWEHMGLSYAELIEELVRLAQEMF 340
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+AT L G+
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKIATKRVLE---SAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ V + L + + L+ + VKPA G S G+++ E+L
Sbjct: 141 PQVAYTVYIEGQDLDRCLAETEAALSYP-----IFVKPANMGSSVGISKAESEEEL---- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
RA ++ + K R++ +
Sbjct: 192 ----------------RAAILLAL---------------------------KYDSRILIE 208
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK + D K+ I +T P A +
Sbjct: 209 QGVSAREIEVGLLGNT-DVKSTLPGEVVK-NVDFYDYRAKYIDNE-ITMTIPAA--IDES 263
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
A+ + E A+ G SR D F+ D G++ + E+NT+PG T + ++ L E
Sbjct: 264 AMTSMRIYAETAFKAIGACGLSRCDFFLGQD-GQIYLNELNTMPGFTQWS--MYPLLWEH 320
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++ L E F
Sbjct: 321 MGLSYAELIEELVRLAQEMF 340
>gi|443242484|ref|YP_007375709.1| D-alanine, D-alanine ligase [Nonlabens dokdonensis DSW-6]
gi|442799883|gb|AGC75688.1| D-alanine, D-alanine ligase [Nonlabens dokdonensis DSW-6]
Length = 327
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 148/375 (39%), Gaps = 62/375 (16%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ ++ GG S E ISL S + H+ D V +I + Y +Q + DF
Sbjct: 4 IAVLMGGYSHEWEISLKSGAVIAQHLNKDLYKVYPIHILKEGWYYLNEKSQRFEINKNDF 63
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
K+E+ EH+ D + TIHG GEDG +Q LE N+P S
Sbjct: 64 SLKIEN------------EHIL--FDCCYNTIHGTPGEDGKLQAYLELLNIPQTSCDSYQ 109
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTR 258
F+K D + T + + ++EL + N G + VK R
Sbjct: 110 SAITFNKRDCIAVLKPWNITTGNHLYINKGDTIDAEL--------IARNIGLPLFVKANR 161
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS-GFDCHP 317
+GSS GV+ Y V ++ A + +D+ +++E FL+G + + VG+ D
Sbjct: 162 SGSSFGVSKVYRV-KEMEAALEVAF-AVDEEIIIESFLDG------VEVSVGAYQIDDKI 213
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
VLLPTE+ V E D F+Y KY Q TP R ++E +
Sbjct: 214 HVLLPTEI---------VSEND-FFDYEAKYEGKSQEI--TPARIKEENKIVVQEITRRI 261
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
+Q L L AR D F + H F +IN GM + S + QQ
Sbjct: 262 YQVLKLKGLARADFIFHKGTPH------------------FIEINTNPGMSKESIIPQQI 303
Query: 438 SKVGFSHSNILRTII 452
+ +L II
Sbjct: 304 KASHLKLTEVLTDII 318
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 133/349 (38%), Gaps = 75/349 (21%)
Query: 585 AAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEW-IKLAKENQATVFI--- 640
A HL DL + H G+ +E R IN+ L EN+ +F
Sbjct: 23 AVIAQHLNK----DLYKVYPIHILKEGWYYLNEKSQRFEINKNDFSLKIENEHILFDCCY 78
Query: 641 -AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV 699
+HG GEDG LQ+ LE +P T S +K +A+ L + T N
Sbjct: 79 NTIHGTPGEDGKLQAYLELLNIPQTSCDSYQSAITFNK-RDCIAV--LKPWNITTGNHLY 135
Query: 700 RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY-VKALEEC 758
K D + EL ++ L VK R G S GV++ VY VK +E
Sbjct: 136 INKGDTIDA-------ELIARNIGLPLFVKANRSGSSFGVSK--------VYRVKEMEAA 180
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
L E+ E +I E F++ V
Sbjct: 181 L---------------EVAFAVDEEIIIESFLDG-------------------------V 200
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
E++VG +H L+P+ V E+ D E K++G + +TP + + +
Sbjct: 201 EVSVGAYQIDDKIHVLLPTEIVSEN-DFFDYEAKYEGKSQ-EITPARIKEENKIVVQEIT 258
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
+RI L+L+G +R D + G IE+NT PGM+ +++ Q
Sbjct: 259 RRI---YQVLKLKGLARADFIFH--KGTPHFIEINTNPGMSKESIIPQQ 302
>gi|359448066|ref|ZP_09237619.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20480]
gi|358046113|dbj|GAA73868.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20480]
Length = 306
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 147/377 (38%), Gaps = 87/377 (23%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S ++V + +Q N AI+
Sbjct: 10 KVAVMLGGNSAEREVSLKSGQAVFNALQ-------------NCGVDAIA----------- 45
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD + SL + L E NVD VF +HGR GEDG +Q LE N+P+ G+
Sbjct: 46 FDPQNRSLWE----LKEL------NVDRVFIALHGRGGEDGTVQGALEFMNLPYTGSNVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK G T P ++ + F + + KV+VKP+
Sbjct: 96 GSALAMDKIRCKHLFKSAGLSTAPYAVV--------DAKKGFDAHAIMAEFKKVMVKPSH 147
Query: 259 AGSSIGV---TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ T A + D+L A D +V+VE ++ G EFT VL G +
Sbjct: 148 EGSSIGMAQATTAQELEDALINAF-----KFDSQVLVEQWIT-GREFTVTVL----GDEV 197
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P++ + T + ++Y+ KY + YH P ++ +
Sbjct: 198 QPIIEMTT--------------PNGFYDYQAKY-QSNTTQYHCPANLSAHDTQQLQAMSL 242
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F +G + R+D E G ++N + GM + S +
Sbjct: 243 EAFDLVGASGWGRVDAM-----------------QDEQGNFYLLEVNTVPGMTEKSLVPM 285
Query: 436 QASKVGFSHSNILRTII 452
A G S ++ I+
Sbjct: 286 AAKANGASFEQLVVRIL 302
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 127/314 (40%), Gaps = 86/314 (27%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P S+ W +L + N VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+
Sbjct: 48 PQNRSL--W-ELKELNVDRVFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKI 104
Query: 679 ATSLALNHLADLGVLTINK----DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 734
HL L+ D ++ D H + ++ K + VKP+ +G
Sbjct: 105 RCK----HLFKSAGLSTAPYAVVDAKKGFDA---------HAIMAEF--KKVMVKPSHEG 149
Query: 735 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 794
S G+A+ A++ LE+ L+ N+F
Sbjct: 150 SSIGMAQATTAQE-------LEDALI----NAFK-------------------------- 172
Query: 795 ILFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
F SQ + +W+ E TV V+G + P + + +
Sbjct: 173 --FDSQVLVE-----------QWITGREFTVTVLGD-----EVQPIIEMTTPNGFYDYQA 214
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCK-QRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K+Q T P S T+ L + +L+ + G+ R+DA + + G ++
Sbjct: 215 KYQSNTTQYHCPANLSAHDTQQLQAMSLEAFDLVGAS----GWGRVDAMQD-EQGNFYLL 269
Query: 911 EVNTVPGMTPSTVL 924
EVNTVPGMT +++
Sbjct: 270 EVNTVPGMTEKSLV 283
>gi|296270752|ref|YP_003653384.1| D-alanine--D-alanine ligase [Thermobispora bispora DSM 43833]
gi|296093539|gb|ADG89491.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
Length = 386
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 167/411 (40%), Gaps = 51/411 (12%)
Query: 64 EDQTMAKEARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNA 123
+D +E+R RV RV ++ GG ++E +SL A SVL+ I V I ++
Sbjct: 14 DDMNHDRESRS-RV-RVAVVFGGRNSEHSVSLLGAGSVLEAIDQSKYEVIPIGIAQDGRW 71
Query: 124 YAISSAQVY---SNTPADFDFKLESLAQGFGSLSEFA------EHLAANVDIVFPTIHGR 174
S Q Y S D ++LA S S A VD+VFP +HG
Sbjct: 72 VLASERQRYAIESGRLPTVDETGDALAIPTHSASLVALRPGEIPRALGEVDVVFPLLHGP 131
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234
FGEDG IQ +LE V +VG+G A DK L + G P +++ +
Sbjct: 132 FGEDGTIQGLLEMAGVRYVGSGVLASAIGMDKAYMKLVLRASGLPVGPYVVVRD---RDW 188
Query: 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV---AYGVIDSLKKAKGIILEGIDDRVV 291
+ V + V VKP RAGSS G+T A G+ ++++ A+ D +V+
Sbjct: 189 RVDRARVLKEAGDLGWPVFVKPARAGSSQGITKVHDAAGLEEAIEAAR-----EHDPKVL 243
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VE + G A++ +G D P G V V E +++ KY
Sbjct: 244 VEAAIPGREVECAVLESLG---DSPPEA--------SVVGEVVVAEGHEFYDFEAKYF-D 291
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
+ H P P V +R A F+ LG AR+D ++ PS
Sbjct: 292 GGMELHAPADLPESVSERVRALAVQAFEALGCEGLARVDFFYTPS--------------- 336
Query: 412 EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
G ++ +IN + G S + + G + ++ +I A R P L
Sbjct: 337 --GELIVNEINTMPGFTAQSVAPKLWAATGLPYPQLIDRLIQLALRRPPGL 385
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTI 695
VF +HG GEDGT+Q LLE GV Y G GV+AS MDK L L +G +
Sbjct: 123 VVFPLLHGPFGEDGTIQGLLEMAGVRYVGSGVLASAIGMDKAYMKLVLRASGLPVGPYVV 182
Query: 696 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+D + D +LK W + VKPAR G S G+ ++ A L +
Sbjct: 183 VRDRDWRVDRARVLKEAGDLGW----------PVFVKPARAGSSQGITKVHDAAGLEEAI 232
Query: 753 KALEE 757
+A E
Sbjct: 233 EAARE 237
>gi|392946602|ref|ZP_10312244.1| D-alanine--D-alanine ligase [Frankia sp. QA3]
gi|392289896|gb|EIV95920.1| D-alanine--D-alanine ligase [Frankia sp. QA3]
Length = 371
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 145/360 (40%), Gaps = 53/360 (14%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R +R+ L+ GG S E IS SA VL + D V ID + + A ++
Sbjct: 6 RRIRLALLFGGRSTEHAISCVSAGGVLRALDPDVYDVVLVGIDPSGRWVVLPGADALASA 65
Query: 136 PADFDFKLESLAQGFGS-----LSEFAEHLA----------------ANVDIVFPTIHGR 174
+ L S+ +G+ A HL ++D+VFP +HG
Sbjct: 66 GGE----LPSVTASWGTSVVLAPDPTASHLLPRDATEAIHGPLGDIDGDIDVVFPLLHGP 121
Query: 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNE 233
FGEDG +Q +LE VP+VG+G A A DK + G P +L+ G ++E
Sbjct: 122 FGEDGTVQGLLEMAGVPYVGSGVFASAAAMDKQHMKSMLRAAGLPVGPYAVLRAGQTLSE 181
Query: 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV--AYGVIDSLKKAKGIILEGIDDRVV 291
++ + V VKP R GSSIG++ A+ +D+ K D +V+
Sbjct: 182 ADQERLGL---------PVFVKPARGGSSIGISRVDAWADLDTAVKTA----RANDPKVL 228
Query: 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 351
VE + G E VL G V P E+ V +++ KY+ +
Sbjct: 229 VESAIT-GREIECGVLGRLDGPGAQASV--PAEIT--------VTSSAGFYDFEAKYV-S 276
Query: 352 QQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
Q + P R + +++ A F+ L AR+D + P V + T G T
Sbjct: 277 DQTRFDIPARLSPAALARVQQVAVAAFEALDCAGLARVDVFVTPEDQVVVNEVNTMPGFT 336
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 124/296 (41%), Gaps = 77/296 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LLE GVPY G GV AS MDK H+ K
Sbjct: 114 VFPLLHGPFGEDGTVQGLLEMAGVPYVGSGVFASAAAMDK-------QHM---------K 157
Query: 698 DVRRKEDLLKTP--IVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ R L P ++ L+ Q + + VKPAR G S G++R+ DL V
Sbjct: 158 SMLRAAGLPVGPYAVLRAGQTLSEADQERLGLPVFVKPARGGSSIGISRVDAWADLDTAV 217
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K +RA N P ++L S T +
Sbjct: 218 KT-------------ARA-------NDP-------------KVLVESAITGR-------- 236
Query: 813 GNSRWVEITVGVIGKC---GSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPASI 868
EI GV+G+ G+ S+ +TV S E K+ T ++ PA
Sbjct: 237 ------EIECGVLGRLDGPGAQASVPAEITVTSSAGFYDFEAKYVSDQTRFDI---PAR- 286
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+S AL + +Q AL G +R+D FV ++ +V++ EVNT+PG TP ++
Sbjct: 287 LSPAALARVQQVAVAAFEALDCAGLARVDVFVTPED-QVVVNEVNTMPGFTPMSMF 341
>gi|328952241|ref|YP_004369575.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109]
gi|328452565|gb|AEB08394.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109]
Length = 309
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 155/391 (39%), Gaps = 91/391 (23%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
R LR+ L+ GG S+ER +SL S V + + + Y +L Q+ ++
Sbjct: 2 RKLRLALLSGGKSSEREVSLKSGGQVFEALDKAKYDIYRYDPQTDLR-------QLINDA 54
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
P N+D+ +HGR+GEDG IQ +L+ +P+ G+
Sbjct: 55 P--------------------------NLDVALIIMHGRWGEDGTIQGLLDLLGLPYQGS 88
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK---- 251
G A A +K + S + +Q + VP + + + +DP + +
Sbjct: 89 GVMASALAMNK-ELSKTLYRQAGLKVPRAVFFSRQ------------DAIDPRALEAAVG 135
Query: 252 --VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V+KP GSSIGVTVA +D L G L D RV+VE F+ G E TA VL
Sbjct: 136 LPAVIKPVNEGSSIGVTVARH-LDQLGAGIGEAL-AYDRRVLVEEFIS-GMEVTAGVLGN 192
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVI 367
+ V ++P + FNY KYLP T+++ P R +
Sbjct: 193 DALLPLPLVEIVPD-------------KSHPFFNYEAKYLPGATEEI---VPARLSPEMT 236
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++E + LG ++R D T V G I + N I GM
Sbjct: 237 IRVQECGLTAHRALGCWGYSRTD-------TIVRD-----------GEIYVLETNTIPGM 278
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
TS Q A +G +L ++ A +
Sbjct: 279 TATSLFPQAARAMGLDFPALLDRLVELALEK 309
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 122/318 (38%), Gaps = 86/318 (27%)
Query: 620 MRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVA 679
+R IN+ N I +HG GEDGT+Q LL+ G+PY G GVMAS M+K
Sbjct: 47 LRQLIND-----APNLDVALIIMHGRWGEDGTIQGLLDLLGLPYQGSGVMASALAMNK-- 99
Query: 680 TSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--------CVKPA 731
++K + R+ LK P ++ + + L +KP
Sbjct: 100 --------------ELSKTLYRQAG-LKVPRA-VFFSRQDAIDPRALEAAVGLPAVIKPV 143
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
+G S GV A L + E L ++ R ++ E F+
Sbjct: 144 NEGSSIGV---TVARHLDQLGAGIGEAL------AYDRR-------------VLVEEFIS 181
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
E+ T GV+G + + + +S + E
Sbjct: 182 GMEV-------------------------TAGVLGNDALLPLPLVEIVPDKSHPFFNYEA 216
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAFVNVDNGEVLII 910
K+ G + P S T + +C L A+ AL G+SR D V +GE+ ++
Sbjct: 217 KYLPGATEEIVPARLSPEMTIRVQECG----LTAHRALGCWGYSRTDTIVR--DGEIYVL 270
Query: 911 EVNTVPGMTPSTVLIHQA 928
E NT+PGMT +T L QA
Sbjct: 271 ETNTIPGMT-ATSLFPQA 287
>gi|407937472|ref|YP_006853113.1| D-alanine--D-alanine ligase [Acidovorax sp. KKS102]
gi|407895266|gb|AFU44475.1| D-alanine--D-alanine ligase [Acidovorax sp. KKS102]
Length = 329
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 142/382 (37%), Gaps = 73/382 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S VL ++ R ++A+A AQ A
Sbjct: 15 KVAVLMGGDSAEREVSLMSGSGVLQALR-----------SRGVDAHAFDPAQN-----AL 58
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D K + A+ F +L HGR GEDG +Q LE +P+ G G
Sbjct: 59 GDLKRDGYARCFIAL------------------HGRHGEDGTVQGALELLRIPYTGPGVM 100
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK +G T P ++ + + E+ V D ++VKP R
Sbjct: 101 ASAIAMDKVMTKRVWLAEGLPT-PRYVWLAPDRQQREV----VRTVPDELGLPLIVKPPR 155
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIGVT G D + + + D V+ E F+E G E T VL G+ PV
Sbjct: 156 EGSSIGVTKVRGYSDMQEAVQ--LSAQYDPDVLCEEFIE-GEEVTCPVLGQGANARALPV 212
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+ + D ++Y+ KY T V Y P P I+ +
Sbjct: 213 --------------IRIVAPDGAYDYQNKYF-TDDVKYQCPSGLPEAEEREIQRIVLEAY 257
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG + R D S F ++N GM S + A
Sbjct: 258 RTLGCRGWGRADLMIRASDRKPF----------------LLEMNTSPGMTGHSLVPMSAR 301
Query: 439 KVGFSHSNILRTIIGHACSRFP 460
G S+ + I+ A P
Sbjct: 302 ASGISYEELCLRILADAALDTP 323
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 117/293 (39%), Gaps = 65/293 (22%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA--LNHL 687
L ++ A FIA+HG GEDGT+Q LE +PYTGPGVMAS MDKV T L
Sbjct: 61 LKRDGYARCFIALHGRHGEDGTVQGALELLRIPYTGPGVMASAIAMDKVMTKRVWLAEGL 120
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
+ + D +++E + P EL L VKP R+G S GV ++ D
Sbjct: 121 PTPRYVWLAPDRQQREVVRTVP-----DELG-----LPLIVKPPREGSSIGVTKVRGYSD 170
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
+ V+ S + P++L E F+E +E+ NA
Sbjct: 171 MQEAVQ-------------LSAQYD--------PDVLC-EEFIEGEEVTCPVLGQGANAR 208
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
L + + P + + K+Q +G+
Sbjct: 209 AL-------------------PVIRIVAPDGAYDYQNKYFTDDVKYQCPSGL-------- 241
Query: 868 IMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
EA ++ QRI L A L G+ R D + + + ++E+NT PGMT
Sbjct: 242 ---PEAEEREIQRIVLEAYRTLGCRGWGRADLMIRASDRKPFLLEMNTSPGMT 291
>gi|408483960|ref|ZP_11190179.1| D-alanyl-alanine synthetase A [Pseudomonas sp. R81]
Length = 364
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 165/404 (40%), Gaps = 77/404 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVG+I GG SAE +SL SAR+++D + ID+ + + N +
Sbjct: 4 VRVGIIFGGRSAEHEVSLQSARNIVDALDRSRFDPVLIGIDK--------AGHWHLNDTS 55
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAA-------------------NVDIVFPTIHGRFGED 178
+F E+ A +L++ LA +VD++FP +HG GED
Sbjct: 56 NFLLNQENPA--LIALNQSNRELAVVPGKANQQLVETSGTGLLEHVDVIFPIVHGTLGED 113
Query: 179 GGIQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235
G +Q +L ++PFVG+ GS C DK D S + + I V F+ + N +
Sbjct: 114 GCLQGLLRMADLPFVGSDVLGSAVC---MDK-DISKRLLRDAGIAVTPFITL-TRSNAAR 168
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVEL 294
S NKL + VKP GSS+GV+ V D + + L G D++V+VE
Sbjct: 169 TSFEAAVNKLGL---PMFVKPANQGSSVGVS---KVGDEAEYHAAVELALGFDEKVLVES 222
Query: 295 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 354
++ G E VL + +P+ G ++ ++Y KY+ Q
Sbjct: 223 AVK-GREIECAVLG-----NENPIA----------SGCGEIVVSSGFYSYDSKYIDDQAA 266
Query: 355 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414
P IR A F+ LG AR+D + T+ G
Sbjct: 267 QVVVPADISQEASERIRGLAIEAFEVLGCSGLARVDVFL-----------------TDDG 309
Query: 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+L +IN + G + S + G S+S ++ +I A R
Sbjct: 310 EVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIELALER 353
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 174/466 (37%), Gaps = 126/466 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRSRFDPVLIG--IDKAGHWHLNDT---SNF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A Q+V GL +H D
Sbjct: 58 LLNQENPALIALNQSNREL------AVVPGKA------NQQLVETSGTGLLEH-----VD 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 725
CMDK I+K + R + TP + + ++ +
Sbjct: 138 CMDK----------------DISKRLLRDAGIAVTPFITLTRSNAARTSFEAAVNKLGLP 181
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
+ VKPA G S GV+++ D Y H +E+ E ++
Sbjct: 182 MFVKPANQGSSVGVSKVG---DEAEY-------------------HAAVELALGFDEKVL 219
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
E V KG EI V+G + S + V S
Sbjct: 220 VESAV---------------------KGR----EIECAVLGNENPIASGCGEIVV--SSG 252
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
S + K+ + P + +S EA ++ + L G +R+D F+ D+G
Sbjct: 253 FYSYDSKYIDDQAAQVVVP--ADISQEASERIRGLAIEAFEVLGCSGLARVDVFLT-DDG 309
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
EVLI E+N++PG T + ++ L + M + ++++L ER
Sbjct: 310 EVLINEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIELALER 353
>gi|365924638|ref|ZP_09447401.1| D-alanyl-alanine synthetase A [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420265711|ref|ZP_14768244.1| D-alanyl-alanine synthetase A [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394427369|gb|EJF00072.1| D-alanyl-alanine synthetase A [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 375
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 170/402 (42%), Gaps = 62/402 (15%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA------ 129
+ L V L GG S+E +S SA ++ D + D V + +N Y + +
Sbjct: 4 KKLHVALFFGGNSSEHAVSKRSAHNIYDGMDKDKYDVSVFMFTKN--GYLLGNKDSMRIF 61
Query: 130 ------QVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
+V + A+ DF + ++ +E ++D+ +P IHG GEDG +Q
Sbjct: 62 NGEDEDKVVAEATANVDF-----SNPLANIQNISE--VKDIDVFYPVIHGNMGEDGTVQG 114
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+ N P++G+G + +FDK D + ++ I +++ E N++E + +
Sbjct: 115 LFRLLNKPWIGSGVASSGVSFDK-DLTKQLLTFHGIRNTKYIVVTPE-NQAEYTYEKCSE 172
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSE 301
KL + VKP R GSS+G+ Y V + + K + EG D +++VE ++ E
Sbjct: 173 KL---GTTMFVKPARQGSSVGI---YKVENKAEFDKA-VKEGFHYDFKLLVEEAVDHPRE 225
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
+C VL + G++ + E D ++Y K++ V + P
Sbjct: 226 -----------VECS--VLGNRNAKASKLGAIKIPEDDVFYDYNNKFVDASGVEFQMPVE 272
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
P + I++ + F+ LG AR+D FL S V F ++
Sbjct: 273 LPEKLTAEIKQMSLDAFRVLGNRGLARMD--FLVDSNDV---------------PYFGEV 315
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463
N + G S Q + G ++S+++ +I A F + A
Sbjct: 316 NTLPGFTNISLYPQLWAVSGINYSDLIDQLIELAIEEFNDNA 357
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+ +HG +GEDGT+Q L P+ G GV +S DK T L
Sbjct: 99 YPVIHGNMGEDGTVQGLFRLLNKPWIGSGVASSGVSFDKDLTKQLLTFHG---------- 148
Query: 699 VRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
+R + ++ TP + +E S+ T+ VKPAR G S G+ ++ E+ + KA++
Sbjct: 149 IRNTKYIVVTPENQAEYTYEKCSEKLGTTMFVKPARQGSSVGIYKV---ENKAEFDKAVK 205
Query: 757 E 757
E
Sbjct: 206 E 206
>gi|168483459|ref|ZP_02708411.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae CDC1873-00]
gi|418162717|ref|ZP_12799398.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17328]
gi|418176459|ref|ZP_12813050.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA41437]
gi|418219399|ref|ZP_12846064.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae NP127]
gi|418239197|ref|ZP_12865748.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419462834|ref|ZP_14002737.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA02714]
gi|419526388|ref|ZP_14065946.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA14373]
gi|172043156|gb|EDT51202.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae CDC1873-00]
gi|353826779|gb|EHE06936.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17328]
gi|353840530|gb|EHE20594.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA41437]
gi|353873759|gb|EHE53618.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae NP127]
gi|353892188|gb|EHE71937.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379530266|gb|EHY95506.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA02714]
gi|379557028|gb|EHZ22075.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA14373]
Length = 347
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 162/394 (41%), Gaps = 77/394 (19%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q + TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFGQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGK----VV 253
+ A DK + G VP +++G + VT K+D K V
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDD----------VTAKIDEVEEKLAYPVF 169
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313
KP+ GSS+G++ + + L++A + + D RV+VE G
Sbjct: 170 TKPSNMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGV 210
Query: 314 DCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIV 365
+ E+E+ G+ DV+ KD A ++Y KY+ ++ P +
Sbjct: 211 NAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDD 262
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
VI +R+ A F+ +G +R D ++ T+ G + ++N +
Sbjct: 263 VIAVMRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEVFLNELNTMP 305
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G Q S +G S+ ++ ++ A F
Sbjct: 306 GFTQWSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 128/324 (39%), Gaps = 71/324 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADL 690
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +A +
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESVGIAQV 142
Query: 691 GVLTI--NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ I DV K D E+ KL KP+ G S G+++ E+L
Sbjct: 143 PYVAIVEGDDVTAKID-----------EVEEKLAYPVFT-KPSNMGSSVGISKSENQEEL 190
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
+ALE L F + D + Q N
Sbjct: 191 R---QALE---------------------------LAF----QYDSRVLVEQGVNAR--- 213
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
EI VG++G + S +P VK+ + K+ I + P
Sbjct: 214 ----------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK-- 258
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+S + + +Q E A+ G SR D F D GEV + E+NT+PG T + ++
Sbjct: 259 ISDDVIAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEVFLNELNTMPGFTQWS--MYPL 315
Query: 929 LSEQPPMYPHQFFRKVLDLGSERF 952
L + + + +++DL E F
Sbjct: 316 LWDNMGISYPELIERLVDLAKESF 339
>gi|156935388|ref|YP_001439304.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ATCC BAA-894]
gi|156533642|gb|ABU78468.1| hypothetical protein ESA_03246 [Cronobacter sakazakii ATCC BAA-894]
Length = 306
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 137/330 (41%), Gaps = 87/330 (26%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 743
L V R+ DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAQWVALERQ----------DITGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 804 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 861 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAGREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 918 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 947
MT +++ A Q M Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILEL 304
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 75/374 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SL S +VL ++ + ++AYA+ V T +
Sbjct: 4 KIAVLLGGHSAERDVSLQSGSAVLAGLK-----------EAGVDAYAVDPRDVCVTTLKE 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+GF D VF +HGR GEDG +Q +LE +P+ G+G
Sbjct: 53 ---------EGF--------------DKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVM 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK L G L+ ++ LS ++ ++ V+VKP+R
Sbjct: 90 ASAITMDKLRTKLLWQGAGLPVAQWVALERQDIT-GGLSE-ALSARIAALGLPVIVKPSR 147
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ ++L A + E D V+VE +L G EFT +L G + P
Sbjct: 148 EGSSVGMSKVDSA-EALLPALELAFEH-DSEVLVEKWLS-GPEFTVAIL----GDEILP- 199
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
S+ ++ ++Y KYL + + Y P I++ RE A
Sbjct: 200 -------------SIRIQPAGVFYDYEAKYL-SDETQYFCPAG-----IDAGREQA---L 237
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
Q L + D R+ G V S+ G ++N GM S + A
Sbjct: 238 QAL-VMDAWRVLGCRGWGRVDVMQDSD--------GEFYLLEVNTAPGMTSHSLVPMAAR 288
Query: 439 KVGFSHSNILRTII 452
+ G S S ++ I+
Sbjct: 289 QAGMSFSQLVVRIL 302
>gi|421487495|ref|ZP_15934898.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK304]
gi|400370922|gb|EJP23902.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK304]
Length = 347
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 165/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNATIDWDKKIAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V S+++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-SKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAI 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRHNAQTAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIEHLVDLAKQSF 339
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 115/287 (40%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTSKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + + A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAIMRHNAQTAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 308
>gi|417846599|ref|ZP_12492592.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK1073]
gi|339458232|gb|EGP70775.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK1073]
Length = 347
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 166/395 (42%), Gaps = 79/395 (20%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ N ++ +
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFNQTPGQEDRLMT 66
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D+D K+ + S E A +VFP +HG GEDG +Q LE +P+V
Sbjct: 67 NETIDWDKKV--------APSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYV 114
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKV 252
G + A DK + G VP +++G +V ++++ V KL + V
Sbjct: 115 GCNILSSSLAMDKITTKRVLESVGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPV 168
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
KP+ GSS+G++ + + L++A + + D RV+VE G
Sbjct: 169 FTKPSNMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QG 209
Query: 313 FDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPI 364
+ E+E+ G+ DV+ KD A ++Y KY+ ++ P +
Sbjct: 210 VNAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISD 261
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V+ +R+ A F+ +G +R D ++ T+ G I ++N +
Sbjct: 262 DVVAVMRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTM 304
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G Q S +G S+ ++ ++ A F
Sbjct: 305 PGFTQWSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|126650619|ref|ZP_01722842.1| D-alanylalanine synthetase [Bacillus sp. B14905]
gi|126592775|gb|EAZ86774.1| D-alanylalanine synthetase [Bacillus sp. B14905]
Length = 308
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 88/384 (22%), Positives = 157/384 (40%), Gaps = 91/384 (23%)
Query: 73 RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY 132
G ++VG+I GG S+E+ +S+ + + ++ H+ + Q Y
Sbjct: 3 EGVEKMKVGVIMGGTSSEKQVSIMTGKEMVAHL----------------------NKQKY 40
Query: 133 SNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPF 192
+ E + + G +D+ +HG+FGEDG IQ VLE +P+
Sbjct: 41 DVVEIVLEDHQEVIEKVQG------------IDVALLALHGKFGEDGTIQGVLETLGIPY 88
Query: 193 VGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSE--VNESELSNWFVTNKLDPN 248
G+G A DK A + +G T P + L++G E + + EL +
Sbjct: 89 TGSGLLASSLCMDKNMAKKILRYEGIAT-PDWMHLVKGEELPLQDIELMGY--------- 138
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+VVKP GSS+GV + + ++L A +L+ D+ +++E ++ G E T +L+
Sbjct: 139 --PLVVKPNAGGSSVGVQIVHDR-NALLTAVAEVLKW-DNEIIIEQYMI-GDEITCPILN 193
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
LLP + ++ F+Y+ KY + P P+ + +
Sbjct: 194 DR---------LLPV---------LSIKHTAVFFDYQAKYDDASTI--EEPVELPLAIHD 233
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+ + A + L +AR+D +V ++N + GM
Sbjct: 234 RVAKAAMTSYTSLKCSVYARVDMLIKEGVPYVL------------------EVNTLPGMT 275
Query: 429 QTSFLFQQASKVGFSHSNILRTII 452
Q S L + A G S+S +L +II
Sbjct: 276 QNSLLPKSAFAAGISYSALLDSII 299
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 121/294 (41%), Gaps = 73/294 (24%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN-K 697
+A+HG GEDGT+Q +LE G+PYTG G++AS CMDK ++A L G+ T +
Sbjct: 64 LLALHGKFGEDGTIQGVLETLGIPYTGSGLLASSLCMDK---NMAKKILRYEGIATPDWM 120
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ + E+L P+ DI +L L VKP G S GV D + A+ E
Sbjct: 121 HLVKGEEL---PLQDI------ELMGYPLVVKPNAGGSSVGVQ---IVHDRNALLTAVAE 168
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
L + N +I E ++ DEI
Sbjct: 169 VL---------------KWDNE----IIIEQYMIGDEI---------------------- 187
Query: 818 VEITVGVIGKCGSMHS-LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
C ++ L+P +++K + + K+ + I P + D+
Sbjct: 188 ---------TCPILNDRLLPVLSIKHTAVFFDYQAKYDDASTIE---EPVE-LPLAIHDR 234
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
+ +L+ ++R+D + G ++EVNT+PGMT +++L A +
Sbjct: 235 VAKAAMTSYTSLKCSVYARVDMLIK--EGVPYVLEVNTLPGMTQNSLLPKSAFA 286
>gi|312958815|ref|ZP_07773334.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
gi|311286585|gb|EFQ65147.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
Length = 364
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 167/393 (42%), Gaps = 55/393 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--NLNAYAISSAQVYSNT 135
+RVG+I GG SAE +SL SAR+++D + ID+ + + S+ + S
Sbjct: 4 VRVGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPVLIGIDKAGHWHLNDTSNFLLNSEN 63
Query: 136 PADFDFKLES--LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA + LA G ++ + + ++D++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNQSNRELAVVPGKANQQVVETTGQGVLEHIDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK D S + + I V F+ + N + S N+L
Sbjct: 124 DLPFVGSDVLGSAVC---MDK-DISKRLLRDAGIAVTPFITL-TRRNAAHTSFEAAVNRL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+GV+ G A + L G D++V++E ++ G E
Sbjct: 179 GL---PMFVKPANQGSSVGVS-KVGSEAEYHAAVELAL-GFDEKVLLESAVQ-GREIECA 232
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
VL G D +P+ G ++ + ++Y KY+ Q P
Sbjct: 233 VL----GND-NPIA----------SGCGEIVVSNGFYSYDSKYIDDQAAQVVVPADISHE 277
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
IR A F+ LG AR+D + T+ G +L +IN +
Sbjct: 278 ASERIRRLALEAFEVLGCAGLARVDVFL-----------------TDDGEVLINEINSLP 320
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G S+S ++ +I A R
Sbjct: 321 GFTRISMYPKLWQAAGMSYSELVSRLIELALER 353
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 108/468 (23%), Positives = 180/468 (38%), Gaps = 130/468 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N D+S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRSRFEPVLIG--IDKAGHWHLN----DTSN 56
Query: 554 RVVWSL-PYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
++ S P + L + E+ A+ P +A QVV +G+ +H
Sbjct: 57 FLLNSENPALIALNQSNREL------AVVPGKA------NQQVVETTGQGVLEH-----I 99
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
D+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 100 DV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSA 136
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------- 725
CMDK I+K + R + TP + + + +
Sbjct: 137 VCMDK----------------DISKRLLRDAGIAVTPFITLTRRNAAHTSFEAAVNRLGL 180
Query: 726 -LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784
+ VKPA G S GV+++ S + H +E+ E +
Sbjct: 181 PMFVKPANQGSSVGVSKV----------------------GSEAEYHAAVELALGFDEKV 218
Query: 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG 844
+ E V+ EI V+G + S + V S
Sbjct: 219 LLESAVQGR-------------------------EIECAVLGNDNPIASGCGEIVV--SN 251
Query: 845 DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVD 903
S + K+ + P + +S EA ++ + R+ L A L G +R+D F+ D
Sbjct: 252 GFYSYDSKYIDDQAAQVVVP--ADISHEASERIR-RLALEAFEVLGCAGLARVDVFLT-D 307
Query: 904 NGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
+GEVLI E+N++PG T + ++ L + M + ++++L ER
Sbjct: 308 DGEVLINEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIELALER 353
>gi|168491447|ref|ZP_02715590.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae CDC0288-04]
gi|418194237|ref|ZP_12830726.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA47439]
gi|183574225|gb|EDT94753.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae CDC0288-04]
gi|353857815|gb|EHE37777.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA47439]
Length = 347
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 167/395 (42%), Gaps = 79/395 (20%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSA-----QVYS 133
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + S A ++ +
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRLMT 66
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D+D K+ + S E A +VFP +HG GEDG +Q LE +P+V
Sbjct: 67 NETIDWDKKV--------APSAIYEEGA----VVFPVLHGPVGEDGSVQGFLEVLKMPYV 114
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKV 252
G + A DK + G VP +++G +V ++++ V KL + V
Sbjct: 115 GCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---AYPV 168
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
KP+ GSS+G++ + + L++A + D RV+VE G
Sbjct: 169 FTKPSNMGSSVGISKSENQ-EELRQALKLAFR-YDSRVLVE-----------------QG 209
Query: 313 FDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPI 364
+ E+E+ G+ DV+ KD A ++Y KY+ +V P +
Sbjct: 210 VNAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKVTMDIPAKISD 261
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V+ +R+ A F+ +G +R D ++ T+ G I ++N +
Sbjct: 262 DVVAVMRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTM 304
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G Q S VG S+ ++ ++ A F
Sbjct: 305 PGFTQWSMYPLLWDNVGISYPELIERLVDLAKESF 339
Score = 59.7 bits (143), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPVGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKL-----AYPVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F D + Q N
Sbjct: 195 K------------------------------LAF----RYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + +++ PA I S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDI---PAKI-SDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 VGISYPELIERLVDLAKESF 339
>gi|385260856|ref|ZP_10038995.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus sp.
SK140]
gi|385190555|gb|EIF38001.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus sp.
SK140]
Length = 347
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 102/413 (24%), Positives = 173/413 (41%), Gaps = 95/413 (23%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA---- 137
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q ++ TP
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGD---FIKTQEFTQTPGQDER 63
Query: 138 -------DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
D+D K+ + S E A +VFP +HG GEDG +Q LE +
Sbjct: 64 LMTNETIDWDKKI--------APSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKM 111
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNS 249
P+VG + A DK + G VP +++G ++ S+++ V KL S
Sbjct: 112 PYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVGIVEGDDL-ASKIAE--VEEKL---S 165
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V KP+ GSS+G++ + + L++A + + D RV+VE
Sbjct: 166 YPVFTKPSNMGSSVGISKSENK-EELRQALELAFK-YDSRVLVE---------------- 207
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPR 361
G + E+E+ G+ DV+ KD A ++Y KY+ ++ P +
Sbjct: 208 -QGVNAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAK 258
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
VI +R+ A F+ +G +R D ++ T+ G + ++
Sbjct: 259 ISDDVIALMRKNAETAFRAIGGLGLSRCDFFY-----------------TDKGEVFLNEL 301
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA--SYNSVSSHL 472
N + G Q S +G S+ ++ R NLA S+N +HL
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIE--------RLVNLAKESFNKREAHL 346
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 137/350 (39%), Gaps = 71/350 (20%)
Query: 575 ACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIK----- 629
+ + A+ DR A + +Q D + K FT DE M + +W K
Sbjct: 25 SVMRAVNYDRFAVKTFFISQS-GDFI----KTQEFTQTPGQDERLMTNETIDWDKKIAPS 79
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L
Sbjct: 80 AIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES--- 136
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749
G+ + + D L + I ++ +L+ + KP+ G S G+++ E+L
Sbjct: 137 AGIAQVPYVGIVEGDDLASKIAEVEEKLSY-----PVFTKPSNMGSSVGISKSENKEELR 191
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
+ALE L F + D + Q N
Sbjct: 192 ---QALE---------------------------LAF----KYDSRVLVEQGVNAR---- 213
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
EI VG++G + S +P VK+ + K+ I + P +
Sbjct: 214 ---------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--I 259
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
S + + ++ E A+ G SR D F D GEV + E+NT+PG T
Sbjct: 260 SDDVIALMRKNAETAFRAIGGLGLSRCD-FFYTDKGEVFLNELNTMPGFT 308
>gi|379748373|ref|YP_005339194.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare ATCC
13950]
gi|379763206|ref|YP_005349603.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare
MOTT-64]
gi|378800737|gb|AFC44873.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare ATCC
13950]
gi|378811148|gb|AFC55282.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare
MOTT-64]
Length = 381
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 103/409 (25%), Positives = 167/409 (40%), Gaps = 71/409 (17%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DRNLNAY 124
GG RV ++ GG S E IS SA S+L ++ + V I D + A
Sbjct: 15 GGERARVAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPEGSWVLTDGDPAAL 74
Query: 125 AISS---AQVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
AI+ +V + + + + G +L A + A+VD+VFP +HG +GEDG
Sbjct: 75 AITDRRLPEVTAESGTELALPADPRRGGQLVALPPGAGEVLASVDVVFPVLHGPYGEDGT 134
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE VP+VG G A DK + +G +L+ S
Sbjct: 135 IQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVLRPSRA--------- 185
Query: 241 VTNKLDPNSGK-----VVVKPTRAGSSIGVT--VAYGVIDSLKKAKGIILEGIDDRVVVE 293
+L P + V VKP R GSSIGV+ ++ +D+ A D +V+VE
Sbjct: 186 ---RLRPEECQRLGLPVFVKPARGGSSIGVSRVASWDQLDAAVAAA----RRHDPKVIVE 238
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR----EKDAIFNYRRKYL 349
+ VG +C + + VE G + V +D+ +++ KYL
Sbjct: 239 AAI------------VGRELECGVLEMPDGTVEASALGEIRVAGVRGREDSFYDFATKYL 286
Query: 350 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409
P + + +++R+ A F+ + AR+D +FL
Sbjct: 287 -DDAAELDVPAKVDDEIADTVRQLAVRAFKAIDCQGLARVD-FFL--------------- 329
Query: 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
TE G +L +IN + G S + + G + +L T++ A +R
Sbjct: 330 -TEDGPVL-NEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 376
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 68/157 (43%), Gaps = 38/157 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHL--ADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV+AS MDK T A L D VL
Sbjct: 121 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVL 180
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDLT 749
++ R E +C+ L VKPAR G S GV+R+ + L
Sbjct: 181 RPSRARLRPE------------------ECQRLGLPVFVKPARGGSSIGVSRVASWDQLD 222
Query: 750 VYVKALEECLLRIPPNSFSRAH--------GMIEMPN 778
V A R P A G++EMP+
Sbjct: 223 AAVAAAR----RHDPKVIVEAAIVGRELECGVLEMPD 255
>gi|317131747|ref|YP_004091061.1| D-alanine--D-alanine ligase [Ethanoligenens harbinense YUAN-3]
gi|315469726|gb|ADU26330.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3]
Length = 354
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 155/386 (40%), Gaps = 54/386 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY------ 132
RV ++ GG S+E +SL SA SV+ +I D V I R+ + + V
Sbjct: 5 RVAVLFGGMSSEHAVSLVSATSVIANIPRDRFDVVMIGITRD-GEWRLFEGDVEKLAGSG 63
Query: 133 -----SNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
SN PA +S G +LS +D+VFP +HG GEDG +Q +L
Sbjct: 64 WESDPSNRPAFI--APDSRVHGIVALSPDGRIETIRLDVVFPVLHGLNGEDGTVQGLLTL 121
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
+PFVG G A DK ++ + +P + V++ + + V +L+
Sbjct: 122 ARIPFVGCGVTASAVCMDK---AITKALCDTYQIPQAKWETVRVSDLKDNGKAVVERLEA 178
Query: 248 NSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ G + VKP AGSS+G++ A D K I DR +V G E V
Sbjct: 179 HLGYPLFVKPANAGSSVGISKA---ADRETLYKAIETAATHDRKLVFEEAVNGREIECAV 235
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
L + PVV E ++ + ++Y KYL + P P V
Sbjct: 236 LG-----NEEPVVSCCGE----------IKPCNEFYDYNAKYL-AGRTELVIPASLPKDV 279
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+R+ A +F+ LG R+D + L E GT+L + N I G
Sbjct: 280 SERVRQTAMRVFRLLGCRGLTRMDFFAL-----------------EDGTVLLNEPNTIPG 322
Query: 427 MEQTSFLFQQASKVGFSHSNILRTII 452
S + G S+ +L T++
Sbjct: 323 FTSISMYPKLFEAGGISYGELLETLL 348
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 114/306 (37%), Gaps = 76/306 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGT+Q LL +P+ G GV AS CMDK T L D T
Sbjct: 101 VFPVLHGLNGEDGTVQGLLTLARIPFVGCGVTASAVCMDKAIT----KALCD----TYQI 152
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ E + + + D + +L+ L VKPA G S G+++ A D KA
Sbjct: 153 PQAKWETVRVSDLKDNGKAVVERLEAHLGYPLFVKPANAGSSVGISK---AADRETLYKA 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
+E + R L+FE V EI + +
Sbjct: 210 IETA------ATHDRK-------------LVFEEAVNGREIECAVLGNEEP--------- 241
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
V+ CG +K + K+ G + P + + +
Sbjct: 242 ---------VVSCCGE---------IKPCNEFYDYNAKYLAGRTELVIP---ASLPKDVS 280
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
++ +Q + L G +R+D F +++G VL+ E NT+PG T +
Sbjct: 281 ERVRQTAMRVFRLLGCRGLTRMD-FFALEDGTVLLNEPNTIPGFTSIS------------ 327
Query: 935 MYPHQF 940
MYP F
Sbjct: 328 MYPKLF 333
>gi|169823960|ref|YP_001691571.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
gi|190359129|sp|B0S093.1|DDL_FINM2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|167830765|dbj|BAG07681.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
Length = 350
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 124/312 (39%), Gaps = 71/312 (22%)
Query: 617 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 676
+L + S++E I+ +F A+HG GEDGT+Q ++ +P+ G V+ S CMD
Sbjct: 69 DLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALCMD 128
Query: 677 KVATS--LALNHL--ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
K T+ LN + A VL N D KE KT K + VKP
Sbjct: 129 KGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKT--------------SKAVYVKPCN 174
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S GV R E+L KA++ N+F IL+ E +
Sbjct: 175 AGSSVGVMRAETEEELE---KAIQ--------NAFQYDR----------RILVEEEIIGP 213
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
E+ + V+G + S P V + + K
Sbjct: 214 --------------------------ELQIAVMGNDNPVAS-RPGVYQIHDVEFFDYDAK 246
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
+ LTP P M + K + E + + L GFSR+D FV + E+ + E+
Sbjct: 247 YNDSKTEMLTPFP---MDEKLELKARHLAEKVYKLMSLSGFSRVDMFVK--DNELWVNEI 301
Query: 913 NTVPGMTPSTVL 924
NTVPG+TP ++
Sbjct: 302 NTVPGLTPHSMF 313
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 31/313 (9%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ ++ GGPS E +S+ SAR++++++ + V ++ RN I + +D
Sbjct: 5 IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRN--KKFIMKENITEEIKSDE 62
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ L++ S+SE + ++FP IHG +GEDG IQ ++ ++PFVG
Sbjct: 63 ELILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLG 122
Query: 200 CRQAFDK--YDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
DK + E++K +P Q V + ++ + + S V VKP
Sbjct: 123 SALCMDKGYTNDIFELNK-----IP----QAKYVVLCKNDDYNLKEIFEKTSKAVYVKPC 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
AGSS+GV A + L+KA + D R++VE E L + + +P
Sbjct: 174 NAGSSVGVMRA-ETEEELEKAIQNAFQ-YDRRILVE------EEIIGPELQIAVMGNDNP 225
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
V P ++ DV F+Y KY ++ P + + + R A +
Sbjct: 226 VASRPGVYQIH-----DVE----FFDYDAKYNDSKTEMLTPFPMDEKLELKA-RHLAEKV 275
Query: 378 FQRLGLCDFARID 390
++ + L F+R+D
Sbjct: 276 YKLMSLSGFSRVD 288
>gi|418192107|ref|ZP_12828609.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA47388]
gi|353855193|gb|EHE35163.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA47388]
Length = 347
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKIGDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWENMGISYPELIERLVDLAKESF 339
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P + +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--IGDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L E
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWEN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|228952937|ref|ZP_04115001.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423504180|ref|ZP_17480772.1| D-alanine-D-alanine ligase A [Bacillus cereus HD73]
gi|449090052|ref|YP_007422493.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228806742|gb|EEM53297.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|402457321|gb|EJV89089.1| D-alanine-D-alanine ligase A [Bacillus cereus HD73]
gi|449023809|gb|AGE78972.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 304
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 154/378 (40%), Gaps = 89/378 (23%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++G+I GG S+E+ +S+ + ++ H+ D+N Y P
Sbjct: 1 MKIGVIMGGVSSEKQVSIMTGNEMIAHL------------DKN----------KYEIVPI 38
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ K++ + + A ++D +HG++GEDG +Q LE +P+ G+
Sbjct: 39 TLNEKVDLIEK------------AKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNM 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ DK + S ++ + + P ++ E+ + E N ++LD +VVKP
Sbjct: 87 LSSSICMDK-NISKKILRYEGVETPDWI----ELTKMEDLNL---DELDKLGFPLVVKPN 138
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314
GSS+GV + Y K +LE + D VV+E +++ G E T +LD
Sbjct: 139 SGGSSVGVKIVYN-----KNELISMLETVFEWDSEVVIEKYIK-GDEITCSILDGKQ--- 189
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
LP V +R F+Y KY T V P+ + + + +
Sbjct: 190 ------LPI---------VSIRHAAEFFDYNAKYDDTSTV--EEVIELPVEINERVNKAS 232
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
++ L +AR+D +V +IN + GM Q+S L
Sbjct: 233 LACYKALKCSVYARVDMMVKDGIPYVM------------------EINTLPGMTQSSLLP 274
Query: 435 QQASKVGFSHSNILRTII 452
+ A G S+S +L II
Sbjct: 275 KSAEAAGISYSELLDMII 292
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 125/318 (39%), Gaps = 91/318 (28%)
Query: 623 SINEWIKLAKENQATVF--IAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
++NE + L ++ + F +A+HG GEDGT+Q LE+ G+PY+G +++S CMDK
Sbjct: 39 TLNEKVDLIEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSSICMDK--- 95
Query: 681 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT---------LCVKPA 731
I+K + R E ++TP W ELT L VKP
Sbjct: 96 -------------NISKKILRYEG-VETP---DWIELTKMEDLNLDELDKLGFPLVVKPN 138
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV VY K + M+E ++ E +++
Sbjct: 139 SGGSSVGVK--------IVYNK--------------NELISMLETVFEWDSEVVIEKYIK 176
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
DEI S + +P V+++ + +
Sbjct: 177 GDEITCSILDGKQ------------------------------LPIVSIRHAAEFFDYNA 206
Query: 852 KFQGGTGI-NLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K+ + + + P I E ++K AL+ ++R+D V +G ++
Sbjct: 207 KYDDTSTVEEVIELPVEI--NERVNKASLA---CYKALKCSVYARVDMMVK--DGIPYVM 259
Query: 911 EVNTVPGMTPSTVLIHQA 928
E+NT+PGMT S++L A
Sbjct: 260 EINTLPGMTQSSLLPKSA 277
>gi|405380208|ref|ZP_11034049.1| D-alanine--D-alanine ligase [Rhizobium sp. CF142]
gi|397323237|gb|EJJ27634.1| D-alanine--D-alanine ligase [Rhizobium sp. CF142]
Length = 355
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 151/387 (39%), Gaps = 47/387 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+ ++ GG S+E +S+ SA +V+ + + Y+ ++ A + P+
Sbjct: 8 LRIAVLFGGRSSEHDVSIMSATNVMRALDPERYDALPVYVSKDGRWLQSRFADGELDKPS 67
Query: 138 DFDFKLESLAQGFGSLSEFAEH----LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
+L + G G L A A +DIVFP +HG GEDG +Q + + VP
Sbjct: 68 S-GTELCLVPGGRGRLLAIAPDGKAAEAGRIDIVFPVLHGLHGEDGAVQGLCQVARVPLA 126
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
G G A DK A + G S L + L T L +
Sbjct: 127 GCGILGSATALDKDIAKQLLKATGLPVARSVTLD--QEAPPTLETLEATLGL-----PLF 179
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR-VVVELFLEGGSEFTAIVLDVGSG 312
+KP R GSS+GV G S + A + DR ++ E F+ G +++ DV G
Sbjct: 180 IKPARQGSSVGVRKVSG---SQEFAPALTEAFSHDRKLIAEEFIAGREIECSVLEDVKGG 236
Query: 313 -FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371
F P G + E ++Y KYL A P P V IR
Sbjct: 237 LFVSRP-------------GEIAPAESHGFYSYTAKYLDENGAALKVPAELPADVETKIR 283
Query: 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431
+ A+ F+ LG AR+D +FL E + ++N I G S
Sbjct: 284 DMAARAFRALGCDGMARVD-FFL----------------MEDMRFVVNEVNTIPGFTNIS 326
Query: 432 FLFQQASKVGFSHSNILRTIIGHACSR 458
+ + G +++ ++ ++ H +R
Sbjct: 327 MYSKAMAASGVAYAEVIDRLVEHGLAR 353
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 112/285 (39%), Gaps = 64/285 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDG +Q L + VP G G++ S T +DK +A L G L + +
Sbjct: 100 VFPVLHGLHGEDGAVQGLCQVARVPLAGCGILGSATALDK---DIAKQLLKATG-LPVAR 155
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V ++ P ++ E T L L +KPAR G S GV ++ +++ + AL E
Sbjct: 156 SVTLDQE--APPTLETL-EATLGL---PLFIKPARQGSSVGVRKVSGSQE---FAPALTE 206
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
S R LI E F+ R
Sbjct: 207 AF------SHDRK-------------LIAEEFI-----------------------AGRE 224
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMSTEAL 874
+E +V K G S + ES S K+ G L P PA + +
Sbjct: 225 IECSVLEDVKGGLFVSRPGEIAPAESHGFYSYTAKYLDENGAALKVPAELPADVET---- 280
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
K + AL +G +R+D F+ +++ ++ EVNT+PG T
Sbjct: 281 -KIRDMAARAFRALGCDGMARVDFFL-MEDMRFVVNEVNTIPGFT 323
>gi|417923750|ref|ZP_12567207.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK569]
gi|418966797|ref|ZP_13518509.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK616]
gi|342836632|gb|EGU70843.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK569]
gi|383346464|gb|EID24510.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus mitis
SK616]
Length = 347
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V S+++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-SKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G + +++ ++ A F
Sbjct: 310 WSMYPLLWDNMGIIYPDLIERLVDLAKESF 339
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 126/320 (39%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + + I ++ +LT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTSKIAEVEEKLTY-----PVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGIIYPDLIERLVDLAKESF 339
>gi|423689791|ref|ZP_17664311.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SS101]
gi|388000454|gb|EIK61783.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SS101]
Length = 365
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 164/394 (41%), Gaps = 57/394 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN--T 135
+RVG+I GG SAE +SL SAR+++D + ID+ + + ++ N
Sbjct: 4 VRVGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPVLIGIDKAGHWHLNDTSNFLLNQEN 63
Query: 136 PADFDFKLES--LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
PA + LA G S+ + + ++D++FP +HG GEDG +Q +L
Sbjct: 64 PALIALNQSNRELAVVPGKASQQVVETCGQGVLEHIDVIFPIVHGTLGEDGCLQGLLRMA 123
Query: 189 NVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKL 245
++PFVG+ GS C DK D S + + I V F + + N + S KL
Sbjct: 124 DLPFVGSDVLGSAVC---MDK-DISKRLLRGAGIAVTPF-ISLTRANAARTSFETAAGKL 178
Query: 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTA 304
+ +KP GSS+GV+ V D + + L G D++V+VE ++ G E
Sbjct: 179 GV---PMFIKPANQGSSVGVS---KVSDETEYRAAVELALGFDEKVLVESAVQ-GREIEC 231
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G D P+ G ++ ++Y KY+ Q P
Sbjct: 232 AVL----GND-QPIA----------SGCGEIVVSSGFYSYDSKYIDGQAAQVVVPADISH 276
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
IR A F+ LG AR+D + T+ G +L +IN +
Sbjct: 277 EASERIRRLAIEAFEVLGCAGLARVDVFL-----------------TQDGEVLINEINSL 319
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G + S + G S+S ++ +I A R
Sbjct: 320 PGFTRISMYPKLWQAAGMSYSELVSRLIELALER 353
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 108/466 (23%), Positives = 179/466 (38%), Gaps = 126/466 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRSRFEPVLIG--IDKAGHWHLNDT---SNF 57
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P + L + E+ A+ P +A+ QVV +G+ +H D
Sbjct: 58 LLNQENPALIALNQSNREL------AVVPGKAS------QQVVETCGQGVLEH-----ID 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 725
CMDK I+K + R + TP + + ++ +T
Sbjct: 138 CMDK----------------DISKRLLRGAGIAVTPFISLTRANAARTSFETAAGKLGVP 181
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
+ +KPA G S GV+++ D T Y A+E L F
Sbjct: 182 MFIKPANQGSSVGVSKV---SDETEYRAAVELAL------GFD----------------- 215
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845
+++L S + EI V+G + S + V S
Sbjct: 216 -------EKVLVESAVQGR--------------EIECAVLGNDQPIASGCGEIVV--SSG 252
Query: 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905
S + K+ G + P + +S EA ++ ++ L G +R+D F+ D G
Sbjct: 253 FYSYDSKYIDGQAAQVVVP--ADISHEASERIRRLAIEAFEVLGCAGLARVDVFLTQD-G 309
Query: 906 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
EVLI E+N++PG T + ++ L + M + ++++L ER
Sbjct: 310 EVLINEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIELALER 353
>gi|359432536|ref|ZP_09222911.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20652]
gi|357920835|dbj|GAA59160.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20652]
Length = 306
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 149/374 (39%), Gaps = 81/374 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S ++VL+ +Q N AI+
Sbjct: 10 KVAVLLGGNSAEREVSLKSGQAVLNALQ-------------NCGVDAIA----------- 45
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD + SL + L E NV+ VF +HGR GEDG +Q LE N+P+ G+
Sbjct: 46 FDPQSRSLWE----LKEL------NVERVFIALHGRGGEDGTVQGALEFMNLPYTGSNVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK G T P ++ + ++ + NK KV+VKP+
Sbjct: 96 GSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFDATA----IMNKFK----KVMVKPSH 147
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSSIG+ A L++A + D +V+VE ++ G EFT VL G D PV
Sbjct: 148 EGSSIGMAQA-STAQELEEALANAFK-FDSQVLVEQWIT-GREFTITVL----GDDVQPV 200
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+ + T + ++Y+ KY + YH P ++ + F
Sbjct: 201 IEMTT--------------PNGFYDYQAKY-QSNTTQYHCPADLSEQDTKYLQAISLDAF 245
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+G + R+D E G ++N + GM + S + A
Sbjct: 246 DLVGASGWGRVDAM-----------------QDEQGNFYLLEVNTVPGMTEKSLVPMAAK 288
Query: 439 KVGFSHSNILRTII 452
G S ++ I+
Sbjct: 289 ANGASFEQLVVRIL 302
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 123/302 (40%), Gaps = 79/302 (26%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L + N VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+ HL
Sbjct: 55 ELKELNVERVFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRC----KHLF 110
Query: 689 DLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
L+ V K+ T I++ + K + VKP+ +G S G+A+ A+
Sbjct: 111 KSAGLSTAPYAVVDAKKGFDATAIMN---------KFKKVMVKPSHEGSSIGMAQASTAQ 161
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806
+ LEE L N+F F SQ +
Sbjct: 162 E-------LEEAL----ANAFK----------------------------FDSQVLVE-- 180
Query: 807 DRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 863
+W+ E T+ V+G + P + + + K+Q T P
Sbjct: 181 ---------QWITGREFTITVLG-----DDVQPVIEMTTPNGFYDYQAKYQSNTTQYHCP 226
Query: 864 PPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922
S T+ L Q I L A + + G+ R+DA + + G ++EVNTVPGMT +
Sbjct: 227 ADLSEQDTKYL----QAISLDAFDLVGASGWGRVDAMQD-EQGNFYLLEVNTVPGMTEKS 281
Query: 923 VL 924
++
Sbjct: 282 LV 283
>gi|295426234|ref|ZP_06818895.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664]
gi|295064079|gb|EFG55026.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664]
Length = 360
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 151/382 (39%), Gaps = 39/382 (10%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VGLI GG S+E +S+ S ++ + I D V +I N +A
Sbjct: 6 QVGLIFGGNSSEYEVSIVSGHNIYNAIDKDKFDVHPIWI-TNDGYFADEKESFKVLKDPK 64
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ K +L E A +DI FP +HG GEDG +Q + + PFVG
Sbjct: 65 YQVKNPHKVTNISNLIELAN--LPEIDIFFPIVHGNLGEDGSLQGLFRILDKPFVGDDIL 122
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPT 257
A DK + + G + V ++ + + S+ +K+ GK + VKP+
Sbjct: 123 AAAVTMDKEFTKILAQRVG-VPVADWIAVKRRDYDDKNSDKLNYDKVAEKLGKDMFVKPS 181
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+GV+ D KKA + DD+V+VE + G TA++ G D +P
Sbjct: 182 NQGSSVGVSHVTNA-DEYKKALDEAFK-YDDKVLVEETVPGTEVETAVL-----GND-NP 233
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
+V ++ + + ++Y KY P P ++ +R A +
Sbjct: 234 IVSGVGQI---------INAAGSWYSYENKYDDNSTSKLQIPAELPNRIVEKVRSNALKV 284
Query: 378 FQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437
+Q ARID P G ++ T++N + G S +
Sbjct: 285 YQATECSGMARIDSMLTPD-----------------GKVVLTEVNALPGFTNISMYPKLF 327
Query: 438 SKVGFSHSNILRTIIGHACSRF 459
G ++ ++ +I +R+
Sbjct: 328 EAAGIPYTELITRLIEAGQARY 349
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 134/331 (40%), Gaps = 57/331 (17%)
Query: 623 SINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 681
+I+ I+LA + +F VHG +GEDG+LQ L P+ G ++A+ MDK T
Sbjct: 75 NISNLIELANLPEIDIFFPIVHGNLGEDGSLQGLFRILDKPFVGDDILAAAVTMDKEFTK 134
Query: 682 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ +GV + ++ D + ++ ++ K + VKP+ G S GV+
Sbjct: 135 ILAQR---VGVPVADWIAVKRRDYDDKNSDKLNYDKVAEKLGKDMFVKPSNQGSSVGVSH 191
Query: 742 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 801
+ A++ Y KAL+E
Sbjct: 192 VTNADE---YKKALDEAF------------------------------------------ 206
Query: 802 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861
K D+++ + E+ V+G + S + + + +G S E K+ + L
Sbjct: 207 --KYDDKVLVEETVPGTEVETAVLGNDNPIVSGVGQI-INAAGSWYSYENKYDDNSTSKL 263
Query: 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921
P + ++K + + A + G +RID+ + D G+V++ EVN +PG T
Sbjct: 264 QIPAE--LPNRIVEKVRSNALKVYQATECSGMARIDSMLTPD-GKVVLTEVNALPGFT-- 318
Query: 922 TVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ ++ L E + + ++++ G R+
Sbjct: 319 NISMYPKLFEAAGIPYTELITRLIEAGQARY 349
>gi|295691990|ref|YP_003600600.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1]
gi|295030096|emb|CBL49575.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1]
Length = 360
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 156/392 (39%), Gaps = 53/392 (13%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
+ L+VGLI GG S+E +S+ S ++ I D V +I N +A
Sbjct: 3 KKLQVGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWI-TNEGYFANEEESFKVLD 61
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+ K +L E E+L +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 62 DPSYQVKNPHKVNNISNLIEL-ENLP-EIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGD 119
Query: 196 GSRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
DK + + G +I++ F + + ++L+ V KL +
Sbjct: 120 DVLGAAVTMDKEFTKILAQRVGVPVADWISIKRF--EYDDKKNAKLNYEKVAEKLGRD-- 175
Query: 251 KVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
+ VKP+ GSS+G VT A +LK+A DD+V+VE + G TA++
Sbjct: 176 -MFVKPSNQGSSVGVSHVTNADEYTAALKEAF-----KYDDKVLVEKTVPGTEVETAVL- 228
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
G D P+V ++ K + + Y KY P P +I
Sbjct: 229 ----GND-KPIVAGVGQI---------TNAKGSFYTYENKYDDNSTSKLQIPADLPQEII 274
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
+++RE A ++ ARID P G ++ T++N + G
Sbjct: 275 DTVRENARKVYAATECSGMARIDSMLTPG-----------------GKVVLTEVNALPGF 317
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G +S ++ +I RF
Sbjct: 318 TNISMYPKLFEEAGVPYSELITRLIEAGMDRF 349
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 135/337 (40%), Gaps = 67/337 (19%)
Query: 622 HSINEWIKLAKENQATVFIA-VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 680
++I+ I+L + VF VHG +GEDG LQ L P+ G V+ + MDK T
Sbjct: 74 NNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAVTMDKEFT 133
Query: 681 SLALNH----LAD-LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 735
+ +AD + + D ++ L + ++ KL + + VKP+ G
Sbjct: 134 KILAQRVGVPVADWISIKRFEYDDKKNAKLN-------YEKVAEKL-GRDMFVKPSNQGS 185
Query: 736 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795
S GV+ + A++ Y AL+E
Sbjct: 186 SVGVSHVTNADE---YTAALKEAF------------------------------------ 206
Query: 796 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 855
K D+++ + E+ V+G + + + +T G + E K+
Sbjct: 207 --------KYDDKVLVEKTVPGTEVETAVLGNDKPIVAGVGQIT-NAKGSFYTYENKYDD 257
Query: 856 GTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915
+ L P + + E +D ++ + A + G +RID+ + G+V++ EVN +
Sbjct: 258 NSTSKLQIP--ADLPQEIIDTVRENARKVYAATECSGMARIDSML-TPGGKVVLTEVNAL 314
Query: 916 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
PG T + ++ L E+ + + ++++ G +RF
Sbjct: 315 PGFT--NISMYPKLFEEAGVPYSELITRLIEAGMDRF 349
>gi|418134685|ref|ZP_12771542.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA11426]
gi|419440853|ref|ZP_13980898.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA40410]
gi|353901922|gb|EHE77452.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA11426]
gi|379577923|gb|EHZ42840.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA40410]
Length = 347
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 165/390 (42%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFGSL---SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKQVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D R++VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRILVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G S+ ++ ++ A F
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 128/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRILVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|417925705|ref|ZP_12569124.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
SY403409CC001050417]
gi|341591331|gb|EGS34539.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
SY403409CC001050417]
Length = 350
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 124/312 (39%), Gaps = 71/312 (22%)
Query: 617 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 676
+L + S++E I+ +F A+HG GEDGT+Q ++ +P+ G V+ S CMD
Sbjct: 69 DLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALCMD 128
Query: 677 KVATS--LALNHL--ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732
K T+ LN + A VL N D KE KT K + VKP
Sbjct: 129 KGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKT--------------SKAVYVKPCN 174
Query: 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792
G S GV R E+L KA++ N+F IL+ E +
Sbjct: 175 AGSSVGVMRAETEEELE---KAIQ--------NAFQYDR----------RILVEEEIIGP 213
Query: 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 852
E+ + V+G + S P V + + K
Sbjct: 214 --------------------------ELQIAVMGNDNPVAS-RPGVYQIHDVEFFDYDAK 246
Query: 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912
+ LTP P M + K + E + + L GFSR+D FV + E+ + E+
Sbjct: 247 YNDSKTEMLTPFP---MDEKLELKARHLAEKVYKLMSLSGFSRVDMFVK--DNELWVNEI 301
Query: 913 NTVPGMTPSTVL 924
NTVPG+TP ++
Sbjct: 302 NTVPGLTPHSMF 313
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 31/313 (9%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ ++ GGPS E +S+ SAR++++++ + V ++ RN I + +D
Sbjct: 5 IYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRN--KKFIMKENITEEIKSDE 62
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ L++ S+SE + ++FP IHG +GEDG IQ ++ ++PFVG
Sbjct: 63 ELILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLG 122
Query: 200 CRQAFDK--YDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
DK + E++K +P Q V + ++ + + S V VKP
Sbjct: 123 SALCMDKGYTNDIFELNK-----IP----QAKYVVLCKNDDYNLKEIFEKTSKAVYVKPC 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
AGSS+GV A + L+KA + D R++VE E L + + +P
Sbjct: 174 NAGSSVGVMRA-ETEEELEKAIQNAFQ-YDRRILVE------EEIIGPELQIAVMGNDNP 225
Query: 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377
V P ++ DV F+Y KY ++ P + + + R A +
Sbjct: 226 VASRPGVYQIH-----DVE----FFDYDAKYNDSKTEMLTPFPMDEKLELKA-RHLAEKV 275
Query: 378 FQRLGLCDFARID 390
++ + L F+R+D
Sbjct: 276 YKLMSLSGFSRVD 288
>gi|422299777|ref|ZP_16387328.1| D-alanine--D-alanine ligase [Pseudomonas avellanae BPIC 631]
gi|407988220|gb|EKG30821.1| D-alanine--D-alanine ligase [Pseudomonas avellanae BPIC 631]
Length = 363
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 162/390 (41%), Gaps = 55/390 (14%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNTPA 137
V ++ GG S+E +SL SAR+V++ I + + +D+ A + +N PA
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64
Query: 138 DFDFK--------LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
L A G E + LAA +D+VFP IHG FGEDG +Q +L
Sbjct: 65 RIKLSGSGKQLSLLPGSAGGQFVEVETGQPLAA-IDVVFPLIHGAFGEDGALQGLLRMLA 123
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE-LSNWFVTNKLDPN 248
VPFVG A DK D + + + I V F++ +N E LS +L
Sbjct: 124 VPFVGADVLASAACMDK-DVTKRLLRDAGIAVAPFMV----LNRGESLSFAQAAAQL--- 175
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
S + VKP GSS+GV+ V D A + L D +L +E G
Sbjct: 176 SLPMFVKPANQGSSVGVS---KVSDEAGFAAALALGFEFDH---KLLIEQGI-------- 221
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
VG +C VL E ++ G +V D + Y KYL Q P P + +
Sbjct: 222 VGREVEC--AVLGNDEPQVSVCG--EVIANDEFYAYDTKYLNGDQARIAIPAELPSDLSD 277
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+R+ A ++ LG +R+D +F+ TE I+ ++N + G
Sbjct: 278 QVRDVALQAYKVLGCAGLSRVD-FFV----------------TEAREIIINEVNTLPGFT 320
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G S++ ++ +I A R
Sbjct: 321 SISMYPKLWQASGLSYAELIHRLIVLALER 350
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ LL VP+ G V+AS CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLASAACMDKDVTK---RLLRDAGIAVAP 156
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
V + + L + + ++L + VKPA G S GV+++
Sbjct: 157 FMVLNRGESLS------FAQAAAQLSL-PMFVKPANQGSSVGVSKV 195
>gi|254819105|ref|ZP_05224106.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare ATCC
13950]
gi|406031914|ref|YP_006730806.1| D-alanine--D-alanine ligase [Mycobacterium indicus pranii MTCC
9506]
gi|405130461|gb|AFS15716.1| D-alanine--D-alanine ligase [Mycobacterium indicus pranii MTCC
9506]
Length = 381
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 103/409 (25%), Positives = 167/409 (40%), Gaps = 71/409 (17%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DRNLNAY 124
GG RV ++ GG S E IS SA S+L ++ + V I D + A
Sbjct: 15 GGERARVAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPEGSWVLTDGDPAAL 74
Query: 125 AISS---AQVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
AI+ +V + + + + G +L A + A+VD+VFP +HG +GEDG
Sbjct: 75 AITDRRLPEVTAESGTELALSADPRRGGQLVALPPGAGEVLASVDVVFPVLHGPYGEDGT 134
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE VP+VG G A DK + +G +L+ S
Sbjct: 135 IQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVLRPSRA--------- 185
Query: 241 VTNKLDPNSGK-----VVVKPTRAGSSIGVT--VAYGVIDSLKKAKGIILEGIDDRVVVE 293
+L P + V VKP R GSSIGV+ ++ +D+ A D +V+VE
Sbjct: 186 ---RLRPEECQRLGLPVFVKPARGGSSIGVSRVASWDQLDAAVAAA----RRHDPKVIVE 238
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR----EKDAIFNYRRKYL 349
+ VG +C + + VE G + V +D+ +++ KYL
Sbjct: 239 AAI------------VGRELECGVLEMPDGTVEASALGEIRVAGVRGREDSFYDFATKYL 286
Query: 350 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409
P + + +++R+ A F+ + AR+D +FL
Sbjct: 287 -DDAAELDVPAKVDDEIADTVRQLAVRAFKAIDCQGLARVD-FFL--------------- 329
Query: 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
TE G +L +IN + G S + + G + +L T++ A +R
Sbjct: 330 -TEDGPVL-NEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 376
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 68/157 (43%), Gaps = 38/157 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHL--ADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV+AS MDK T A L D VL
Sbjct: 121 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVL 180
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDLT 749
++ R E +C+ L VKPAR G S GV+R+ + L
Sbjct: 181 RPSRARLRPE------------------ECQRLGLPVFVKPARGGSSIGVSRVASWDQLD 222
Query: 750 VYVKALEECLLRIPPNSFSRAH--------GMIEMPN 778
V A R P A G++EMP+
Sbjct: 223 AAVAAAR----RHDPKVIVEAAIVGRELECGVLEMPD 255
>gi|398914056|ref|ZP_10656780.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM49]
gi|398179265|gb|EJM66881.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM49]
Length = 364
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 161/406 (39%), Gaps = 81/406 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I GG SAE +SL SA++++D + ID+ + N P+
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSAKNIVDALDRSRFEPVLIGIDKQ--------GHWHLNDPS 55
Query: 138 DFDFKLES------------LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGG 180
+F E+ LA G S+ ++ L +VD++FP +HG GEDG
Sbjct: 56 NFLLNQENPALIALNQSNRELAVVPGKASQQLVETSSQELLGHVDVIFPIVHGTLGEDGC 115
Query: 181 IQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
+Q +L ++PFVG+ GS C DK + + G P L + + +
Sbjct: 116 LQGLLRMADLPFVGSDVLGSAVC---MDKDVSKRLLRDAGLAVTPFVTLTRATAARTGFA 172
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFL 296
V ++L + VKP GSS+GV+ V D + + L D +V+VE +
Sbjct: 173 E--VQSRLGL---PLFVKPANQGSSVGVS---KVTDEAEYTSAVELALSFDTKVLVESAV 224
Query: 297 EGGSEFTAIVLD----VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ 352
G E VL + SG C +V+ + ++Y KY+
Sbjct: 225 S-GREIECAVLGNEDAIASG--CGEIVV-----------------RSGFYSYDSKYIDDT 264
Query: 353 QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 412
P + IR A FQ LG AR+D + T+
Sbjct: 265 AAEVVVPANISVEASERIRALAVEAFQILGCSGLARVDVFL-----------------TD 307
Query: 413 WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
G +L +IN + G + S + G ++S ++ +I A +
Sbjct: 308 SGEVLINEINSLPGFTRISMYPKLWQATGMTYSELVTRLIELALEK 353
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 112/474 (23%), Positives = 184/474 (38%), Gaps = 142/474 (29%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 549
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 550 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 609
S+ + P + L + E+ A+ P +A+ Q+V + L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQELLGH--- 98
Query: 610 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 720
S CMDK ++K + R L TP V + + E+ S+
Sbjct: 134 GSAVCMDK----------------DVSKRLLRDAGLAVTPFVTLTRATAARTGFAEVQSR 177
Query: 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 780
L L VKPA G S GV+++ D Y A+E L SF
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKVT---DEAEYTSAVELAL------SFD------------ 215
Query: 781 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 840
++L S + + EI V+G ++ S + V
Sbjct: 216 ------------TKVLVESAVSGR--------------EIECAVLGNEDAIASGCGEIVV 249
Query: 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL---EGFSRID 897
+ S + K+ T + P +S EA ++ + L A Q+ G +R+D
Sbjct: 250 RSG--FYSYDSKYIDDTAAEVVVPAN--ISVEASERIRA---LAVEAFQILGCSGLARVD 302
Query: 898 AFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
F+ D+GEVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 303 VFLT-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVTRLIELALEK 353
>gi|119025204|ref|YP_909049.1| D-alanyl-alanine synthetase A [Bifidobacterium adolescentis ATCC
15703]
gi|166198475|sp|A0ZZT4.1|DDL_BIFAA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|118764788|dbj|BAF38967.1| D-alanine-D-alanine ligase [Bifidobacterium adolescentis ATCC
15703]
Length = 378
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 158/402 (39%), Gaps = 61/402 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----------LNAYAISS 128
R+ ++ GG + E IS SA S L + D I ++ L
Sbjct: 5 RIVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEG 64
Query: 129 AQVYSNTPADFDFKLE-SLAQ-GF------GSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
TP D LE +L Q GF G+++ F +VD VFP +HG +GEDG
Sbjct: 65 LPTVEKTPGAKDVVLEVALGQDGFFAREDDGTMTPFG-----HVDAVFPVLHGPYGEDGT 119
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ + E VP+VG G A DK+ + ++ G P L ++ ++ F
Sbjct: 120 IQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDK---ASEF 176
Query: 241 VTNKLDPNSGKV---------VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD-RV 290
T+ D +V VKP+RAGSS GVT D+ + A + D R+
Sbjct: 177 KTDA-DAIMAQVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASRHDWRI 235
Query: 291 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 350
+VE ++ E VL +G P P E+ L + D D +++ KY+
Sbjct: 236 LVEQGID-AREIECAVLCPKAGE--APQASWPGEIVLDKRAEGD----DQFYDFDSKYMD 288
Query: 351 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 410
P P +N +RE A F + +R+D +
Sbjct: 289 AAASHVEVPANLPEETLNLVRETAKKAFVAVDGAGLSRVDTFV----------------- 331
Query: 411 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
T+ G ++ +IN + G S + G +++++ +I
Sbjct: 332 TKDGKVMVNEINTMPGFTSISMYPKAWEATGVRYTDLITKLI 373
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q L E GVPY G GV+AS CMDK T + L I
Sbjct: 105 AVFPVLHGPYGEDGTIQGLFEMMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGIT 164
Query: 697 KDVRR--KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
D R K KT I +++ L VKP+R G S GV ++
Sbjct: 165 LDARSFDKASEFKTDADAIMAQVSEAGLQYPLFVKPSRAGSSFGVTKV 212
>gi|424797994|ref|ZP_18223536.1| D-alanine--D-alanine ligase B [Cronobacter sakazakii 696]
gi|423233715|emb|CCK05406.1| D-alanine--D-alanine ligase B [Cronobacter sakazakii 696]
Length = 306
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 136/330 (41%), Gaps = 87/330 (26%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 743
L V RR D L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERR----------DTTGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 804 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 861 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAEREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 918 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 947
MT +++ A Q M Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILEL 304
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 75/374 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SL S +VL ++ + ++AYA+ + T +
Sbjct: 4 KIAVLLGGHSAERDVSLQSGSAVLAGLK-----------EAGVDAYAVDPRDMCVTTLKE 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+GF D VF +HGR GEDG +Q +LE +P+ G+G
Sbjct: 53 ---------EGF--------------DKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVM 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK L G P L+ + LS ++ ++ V+VKP+R
Sbjct: 90 ASAITMDKLRTKLLWQGAGLPVAPWVALERRDTT-GGLSE-ALSARIAALGLPVIVKPSR 147
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ ++L A + E D V+VE +L G EFT +L G + P
Sbjct: 148 EGSSVGMS-KVDSAEALLPALELAFEH-DSEVLVEKWLS-GPEFTVAIL----GDEILP- 199
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
S+ ++ ++Y KYL + + Y P I++ RE A
Sbjct: 200 -------------SIRIQPAGVFYDYEAKYL-SDETQYFCPAG-----IDAEREQA---L 237
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
Q L + D R+ G V S+ G ++N GM S + A
Sbjct: 238 QAL-VMDAWRVLGCRGWGRVDVMQDSD--------GEFYLLEVNTAPGMTSHSLVPMAAR 288
Query: 439 KVGFSHSNILRTII 452
+ G S S ++ I+
Sbjct: 289 QAGMSFSQLVVRIL 302
>gi|390435446|ref|ZP_10223984.1| D-alanine--D-alanine ligase [Pantoea agglomerans IG1]
Length = 365
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 167/404 (41%), Gaps = 59/404 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA+++L+ I V ID+ + ++ A + +
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQ-GHWRLNDASNFLLNAE 62
Query: 135 TPA--DFDFKLESLAQGFGS-----LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK 187
PA + E +A G+ ++ H + +D++FP +HG GEDG +Q +L
Sbjct: 63 NPALIALNHAAEDVALVPGTTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRM 122
Query: 188 YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247
++PFVG+ + DK + G P + ++ ++L V +
Sbjct: 123 ASLPFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAP--WVSVTQAQRAQLDASAVIARF-- 178
Query: 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKK--AKGIILEGIDDRVVVELFLEGGSEFTAI 305
+ +KP GSS+GV+ +DS+++ A + D +V++E ++ G E
Sbjct: 179 -GLPLFIKPANQGSSVGVS----KVDSIEEFDAALALAFSFDRKVLIEQGIK-GREIECA 232
Query: 306 VL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL D C VV+ DA ++Y KY+ P
Sbjct: 233 VLGNDAPEASPCGEVVV-----------------HDAFYSYDTKYISESGAQTVVPAAIS 275
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
++IRE A F L AR+D VF +++ G I+ ++N
Sbjct: 276 PETSDAIREVAIKAFTALECFGMARVD---------VFLTAD--------GEIIVNEVNT 318
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNS 467
+ G S + G S+ +++ +I A R ++ S
Sbjct: 319 LPGFTNISMYPKLWQAAGLSYQDLISRLIDLAIERHQQASTLKS 362
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 105/467 (22%), Positives = 171/467 (36%), Gaps = 128/467 (27%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V ++FGG ++E +VSL S N+ L+A + LL ID N D+S+
Sbjct: 6 VGIVFGGKSAEHEVSLQSAKNI---LEAIDKTRFDVVLLG--IDKQGHWRLN----DASN 56
Query: 554 RVVWSL-PYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
++ + P + L H E+V LV G + T
Sbjct: 57 FLLNAENPALIALNHAAEDVA-------------------------LVPGTTQQQIIT-- 89
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
RH+ + ++ +F VHG +GEDG+LQ LL +P+ G V+ S
Sbjct: 90 --------RHNAHPLSQID-----VIFPIVHGTLGEDGSLQGLLRMASLPFVGSDVLGSA 136
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------- 725
MDK K + R L P V + ++L
Sbjct: 137 VSMDK----------------DFTKRLLRDAGLNVAPWVSVTQAQRAQLDASAVIARFGL 180
Query: 726 -LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784
L +KPA G S GV+++ E+ + AL SF R
Sbjct: 181 PLFIKPANQGSSVGVSKVDSIEE---FDAALALAF------SFDR--------------- 216
Query: 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG 844
+++ + + EI V+G S V V ++
Sbjct: 217 -----------------------KVLIEQGIKGREIECAVLGNDAPEASPCGEVVVHDA- 252
Query: 845 DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN 904
S + K+ +G P A +S E D ++ AL+ G +R+D F+ D
Sbjct: 253 -FYSYDTKYISESGAQTVVPAA--ISPETSDAIREVAIKAFTALECFGMARVDVFLTAD- 308
Query: 905 GEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951
GE+++ EVNT+PG T + ++ L + + +++DL ER
Sbjct: 309 GEIIVNEVNTLPGFT--NISMYPKLWQAAGLSYQDLISRLIDLAIER 353
>gi|168493572|ref|ZP_02717715.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae CDC3059-06]
gi|418098990|ref|ZP_12736087.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 6901-05]
gi|418105771|ref|ZP_12742827.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44500]
gi|418174059|ref|ZP_12810671.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA41277]
gi|419465291|ref|ZP_14005182.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA04175]
gi|419528007|ref|ZP_14067550.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17719]
gi|419535127|ref|ZP_14074626.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17457]
gi|421281657|ref|ZP_15732454.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA04672]
gi|183576308|gb|EDT96836.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae CDC3059-06]
gi|353768972|gb|EHD49494.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 6901-05]
gi|353775947|gb|EHD56426.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44500]
gi|353838015|gb|EHE18096.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA41277]
gi|379536891|gb|EHZ02077.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA04175]
gi|379563288|gb|EHZ28292.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17457]
gi|379566160|gb|EHZ31151.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17719]
gi|395880922|gb|EJG91973.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA04672]
Length = 347
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 163/387 (42%), Gaps = 63/387 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+ + + + V +VFP +HG GEDG +Q LE +P+VG +
Sbjct: 64 LMTNETIDWDKQVAPSAIYEEGV-VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSS 122
Query: 202 QAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G VP +++G +V ++++ V KL + V KP+ G
Sbjct: 123 LAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---AYPVFTKPSNMG 176
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ + + L++A + D RV+VE G +
Sbjct: 177 SSVGISKSENQ-EELRQALKLAFR-YDSRVLVE-----------------QGVNAR---- 213
Query: 321 LPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+ +R+
Sbjct: 214 ---EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAVMRQ 269
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A F+ +G +R D ++ T+ G I ++N + G Q S
Sbjct: 270 NAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQWSM 312
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRF 459
+G S+ ++ ++ A F
Sbjct: 313 YPLLWDNMGISYPGLIERLVDLAKESF 339
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 122/320 (38%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGVVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKL-----AYPVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F D + Q N
Sbjct: 195 K------------------------------LAF----RYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ +++DL E F
Sbjct: 320 MGISYPGLIERLVDLAKESF 339
>gi|169832697|ref|YP_001695052.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae
Hungary19A-6]
gi|229486021|sp|B1I733.1|DDL_STRPI RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|168995199|gb|ACA35811.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae Hungary19A-6]
Length = 347
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 162/390 (41%), Gaps = 69/390 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP D
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEDR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWDKKVAPSAIYEERA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V + + + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVTAK------IAEVEEELTYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALKLAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P + V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAKISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S +G ++ +++ ++ A F
Sbjct: 310 WSMYPLLWDNMGITYPDLIERLVELAKESF 339
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 61/287 (21%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EERAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ ELT + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEELTYP-----VFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F + D + Q N
Sbjct: 195 K------------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ +Q E A+ G SR D F D GE+ + E+NT+PG T
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFT 308
>gi|440228006|ref|YP_007335097.1| vancomycin/teicoplanin A-type resistance protein VanA [Rhizobium
tropici CIAT 899]
gi|440039517|gb|AGB72551.1| vancomycin/teicoplanin A-type resistance protein VanA [Rhizobium
tropici CIAT 899]
Length = 354
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 152/390 (38%), Gaps = 52/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRV ++ GG S+E +S+ SAR+V+ I + IDR + P
Sbjct: 4 LRVAVLFGGQSSEHEVSVMSARNVVKAIDRAKYEIVPILIDRAGRWLLVQEKGGVLPEPI 63
Query: 138 DFDFKLESLAQGF-GSLSEF----AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPF 192
++ L G G L A L A VD++FP +HG GEDG IQ + + +P
Sbjct: 64 AYEGTEVCLVPGGKGRLMALEGAGARELPA-VDVLFPVLHGLNGEDGSIQGLAQIVGLPL 122
Query: 193 VGTGSRACRQAFDKYDASLEMSKQGF-ITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
VG G A DK A + + G + + L +G + + E+ +
Sbjct: 123 VGCGILGSANAIDKDMAKRLLREAGLPVALSVTLTRGEKPDFDEIVSAL--------GSP 174
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGS-EFTAIVLD 308
V VKPTR GSS+GV+ + + + E D +V+VE F+ E+ +
Sbjct: 175 VFVKPTRQGSSVGVS----KVQDAAAFESALAEAFRHDCKVLVEEFVRAREIEYAVLEQP 230
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
G+ F P G + ++Y KYL P P
Sbjct: 231 DGTLFVSVP-------------GEIATAATHGFYSYEAKYLDQHGAVVTVPADIPAGTAE 277
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
+++ A+ F+ LG AR+D + P G+ + +IN + G
Sbjct: 278 AMKRMAADGFRALGCEGLARVDFFLRPD-----------------GSAVINEINTMPGFT 320
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + S G S+ ++ +I H +R
Sbjct: 321 NISMYPKAMSASGISYPELISRLIEHGLAR 350
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 119/313 (38%), Gaps = 69/313 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F +HG GEDG++Q L + G+P G G++ S +DK L L++
Sbjct: 96 VLFPVLHGLNGEDGSIQGLAQIVGLPLVGCGILGSANAIDKDMAKRLLREAGLPVALSVT 155
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
K D + E+ S L VKP R G S GV+++ +D + AL
Sbjct: 156 LTRGEKPD---------FDEIVSALGSPVF-VKPTRQGSSVGVSKV---QDAAAFESALA 202
Query: 757 ECL---LRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS--QSTNKNADRLMW 811
E ++ F RA + E + E + D LF S A +
Sbjct: 203 EAFRHDCKVLVEEFVRAREI--------EYAVLE---QPDGTLFVSVPGEIATAATHGFY 251
Query: 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
+++++ + G ++++ GT A M
Sbjct: 252 SYEAKYLD----------------------QHGAVVTVPADIPAGT--------AEAMKR 281
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
A D + AL EG +R+D F+ D G +I E+NT+PG T + + +A+S
Sbjct: 282 MAADGFR--------ALGCEGLARVDFFLRPD-GSAVINEINTMPGFT-NISMYPKAMSA 331
Query: 932 QPPMYPHQFFRKV 944
YP R +
Sbjct: 332 SGISYPELISRLI 344
>gi|307700634|ref|ZP_07637662.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
FB024-16]
gi|307614164|gb|EFN93405.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
FB024-16]
Length = 374
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 71/303 (23%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTINKDV- 699
+HG GEDGT+Q L E GVPYTG GV AS CMDK T L +G + D
Sbjct: 113 LHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYA 172
Query: 700 -RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
R +E + ++D+ + VKP+R G S GV+R+ E+ V A
Sbjct: 173 WRHRESAVPAEVLDL---------GLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVA---- 219
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNADRLMWKGNSRW 817
+R H P++++ V E+ + + + A R + G
Sbjct: 220 ---------ARRHD--------PKVIVEAGVVGAREVECAVLEGRDGAAPRTAFPGE--- 259
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP--ASIMSTEALD 875
V +K++ + E K+ ++L+ P +++ D
Sbjct: 260 --------------------VVMKQTPGLYDFESKYFAQDAVSLSIPAQIPELVAKRICD 299
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 935
+Q EL++ EG +R+D F + G +++ E+NT+PGMTP ++ P M
Sbjct: 300 YARQAFELVSG----EGLARVDFFYVEETGRLILNEINTMPGMTPFSLF--------PGM 347
Query: 936 YPH 938
+ H
Sbjct: 348 WEH 350
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 161/395 (40%), Gaps = 50/395 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV +I GG S E IS +A VL+HI + I R A+ + +V + D
Sbjct: 8 RVAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRG-GAWVLMPDEVEALRLQD 66
Query: 139 FDFKLESLAQGFGSLSEFAEHL--------------AANVDIVFPTIHGRFGEDGGIQEV 184
+ F +L +HL +D+V P +HG +GEDG IQ +
Sbjct: 67 GQGAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGL 126
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
E VP+ G G A DK + ++ ++G I V F + S V +
Sbjct: 127 CEMVGVPYTGCGVTASALCMDK-GYTKQVLERGGIPVGRFHVITDYAWRHRESA--VPAE 183
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEF 302
+ V VKP+RAGSS+GV+ +++ ++ + ++ D +V+VE + G E
Sbjct: 184 VLDLGLPVFVKPSRAGSSLGVS----RVEAWEEFEAAVVAARRHDPKVIVEAGVVGAREV 239
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL+ G F G V +++ ++++ KY V+ P +
Sbjct: 240 ECAVLEGRDG----------AAPRTAFPGEVVMKQTPGLYDFESKYFAQDAVSLSIPAQI 289
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P +V I + A F+ + AR+D +++ E G ++ +IN
Sbjct: 290 PELVAKRICDYARQAFELVSGEGLARVDFFYV----------------EETGRLILNEIN 333
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
+ GM S +G + +++ +I A S
Sbjct: 334 TMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIALS 368
>gi|145593823|ref|YP_001158120.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
gi|145303160|gb|ABP53742.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
Length = 368
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 158/398 (39%), Gaps = 58/398 (14%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAISS 128
+RV ++ GG S E GIS SA SVL + D+ V I R + AIS+
Sbjct: 7 IRVAVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGSDPAELAISA 66
Query: 129 ---AQVYSNTPADFDFKLESLAQGFGSLSEFAEHLA-ANVDIVFPTIHGRFGEDGGIQEV 184
+V + + A + G L A A A+VD+VFP +HG +GEDG IQ +
Sbjct: 67 RRLPEVTAESGAAIMLNADPSHSGLMVLDATAGPRALADVDVVFPVLHGAYGEDGSIQGM 126
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
LE +P+VG A A DK + +G P +L+ S +T +
Sbjct: 127 LEMAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPIGPYVVLR---------SGMTLTEQ 177
Query: 245 LDPNSG-KVVVKPTRAGSSIGVTVA--YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
G V VKP+RAGSS G+T + +D+ ID +V+VE + G E
Sbjct: 178 DKQRLGLPVFVKPSRAGSSFGITKISDWAELDAAVATA----RQIDSKVLVEAAVV-GRE 232
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-YHTPP 360
VL+ +G VL E++ G D +++ KY+ + Y P
Sbjct: 233 IECGVLEGEAGGVPEASVL----AEVRVVGEYD------FYDFEAKYIDAESACEYDIPA 282
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
V ++E A F L AR D + P I +
Sbjct: 283 GLSERVTRQVQEYAVRAFTALDCAGLARADFFVTPEL-----------------DIYLNE 325
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
IN + G +S + + G + ++ +I A R
Sbjct: 326 INTMPGFTPSSMFPRMWAASGLEYPKLVNRLIRTALQR 363
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 120/323 (37%), Gaps = 77/323 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDG++Q +LE G+PY G V AS MDK K
Sbjct: 109 VFPVLHGAYGEDGSIQGMLEMAGIPYVGANVFASAAAMDK----------------EFTK 152
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKT-----LCVKPARDGCSTGVARLCCAEDLTVYV 752
+ E + P V + +T Q K + VKP+R G S G+ ++ +L V
Sbjct: 153 KLCAAEGIPIGPYVVLRSGMTLTEQDKQRLGLPVFVKPSRAGSSFGITKISDWAELDAAV 212
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ ++L + +
Sbjct: 213 ATARQI---------------------------------DSKVLVEAAVVGR-------- 231
Query: 813 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
EI GV+ G+ G + S++ V V D E K+ PA +
Sbjct: 232 ------EIECGVLEGEAGGVPEASVLAEVRVVGEYDFYDFEAKYIDAESACEYDIPAGL- 284
Query: 870 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL--IH 926
+E + + Q + A AL G +R D FV + ++ + E+NT+PG TPS++ +
Sbjct: 285 -SERVTRQVQEYAVRAFTALDCAGLARADFFVTPEL-DIYLNEINTMPGFTPSSMFPRMW 342
Query: 927 QALSEQPPMYPHQFFRKVLDLGS 949
A + P ++ R L G+
Sbjct: 343 AASGLEYPKLVNRLIRTALQRGA 365
>gi|269976776|ref|ZP_06183751.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
gi|269934973|gb|EEZ91532.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
Length = 374
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 163/395 (41%), Gaps = 50/395 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV +I GG S E IS +A VL+HI + I R A+ + +V + D
Sbjct: 8 RVAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRG-GAWVLMPDEVEALRLQD 66
Query: 139 FDFKLESLAQGFGSLSEFAEHL--------------AANVDIVFPTIHGRFGEDGGIQEV 184
+ F +L +HL +D+V P +HG +GEDG IQ +
Sbjct: 67 GQGAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGL 126
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
E VP+ G G A DK + ++ ++G I V F + S V +
Sbjct: 127 CEMVGVPYTGCGVTASALCMDK-GYTKQVLERGGIPVGRFHVITDYAWRHRESA--VPAE 183
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEF 302
+ V VKP+RAGSS+GV+ +++ ++ + ++ D +V+VE + G E
Sbjct: 184 VLDFGLPVFVKPSRAGSSLGVS----RVEAWEEFEAAVVAARRHDPKVIVEAGVVGAREV 239
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL+ G P +P EV + ++ ++++ KY V+ P +
Sbjct: 240 ECAVLEGRDG--AAPRTAIPGEVVM--------KQTPGMYDFESKYFAQDAVSLSIPAQI 289
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P +V I + A F+ + AR+D +++ E G ++ +IN
Sbjct: 290 PELVAKRICDYARQAFELVSGEGLARVDFFYV----------------EETGRLILNEIN 333
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
+ GM S +G + +++ +I A S
Sbjct: 334 TMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIALS 368
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 130/304 (42%), Gaps = 73/304 (24%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTINKDV- 699
+HG GEDGT+Q L E GVPYTG GV AS CMDK T L +G + D
Sbjct: 113 LHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYA 172
Query: 700 -RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
R +E + ++D + VKP+R G S GV+R+ E+ V A
Sbjct: 173 WRHRESAVPAEVLDF---------GLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVA---- 219
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 818
+R H P++++ V +R V
Sbjct: 220 ---------ARRHD--------PKVIVEAGVV-----------------------GAREV 239
Query: 819 EITVGVIGKCGSM-HSLMPS-VTVKESGDILSLEEKFQGGTGINLTPPP--ASIMSTEAL 874
E V + G+ G+ + +P V +K++ + E K+ ++L+ P +++
Sbjct: 240 ECAV-LEGRDGAAPRTAIPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRIC 298
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 934
D +Q EL++ EG +R+D F + G +++ E+NT+PGMTP ++ P
Sbjct: 299 DYARQAFELVSG----EGLARVDFFYVEETGRLILNEINTMPGMTPFSLF--------PG 346
Query: 935 MYPH 938
M+ H
Sbjct: 347 MWEH 350
>gi|398923514|ref|ZP_10660734.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM48]
gi|398175130|gb|EJM62897.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM48]
Length = 364
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/402 (24%), Positives = 160/402 (39%), Gaps = 73/402 (18%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LRVG+I GG SAE +SL SA++++D + ID+ + N P+
Sbjct: 4 LRVGIIFGGRSAEHEVSLQSAKNIVDALDRSRFEPVLIGIDKQ--------GHWHLNDPS 55
Query: 138 DFDFKLES------------LAQGFGSLSE-----FAEHLAANVDIVFPTIHGRFGEDGG 180
+F E+ LA G S+ ++ L VD++FP +HG GEDG
Sbjct: 56 NFLLNQENPALIALNQSNRELAVVPGKASQQLVETSSQELLGPVDVIFPIVHGTLGEDGC 115
Query: 181 IQEVLEKYNVPFVGT---GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237
+Q +L ++PFVG+ GS C DK + + G P L + + +
Sbjct: 116 LQGLLRMADLPFVGSDVLGSAVC---MDKDISKRLLRDAGLAVTPFVTLTRATAARTGFA 172
Query: 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFL 296
V ++L + VKP GSS+GV+ V D + + L D +V++E
Sbjct: 173 E--VQSRLGL---PLFVKPANQGSSVGVS---KVTDEAEYTSAVELALSFDTKVLIE--- 221
Query: 297 EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAY 356
+A+ SG + VL E G + VR ++Y KY+
Sbjct: 222 ------SAV-----SGREIECAVLGNEEAVASGCGEIVVR--SGFYSYDSKYIDDTAAEV 268
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P + IR A FQ LG AR+D + T+ G +
Sbjct: 269 VVPANISVEASERIRALAVEAFQVLGCAGLARVDVFL-----------------TDSGEV 311
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
L +IN + G + S + G ++S ++ +I A +
Sbjct: 312 LINEINSLPGFTRISMYPKLWQATGMTYSELVTRLIELALEK 353
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 130/324 (40%), Gaps = 80/324 (24%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
+F VHG +GEDG LQ LL +P+ G V+ S CMDK I+
Sbjct: 101 VIFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAVCMDK----------------DIS 144
Query: 697 KDVRRKEDLLKTPIVDI---------WHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
K + R L TP V + + E+ S+L L VKPA G S GV+++ D
Sbjct: 145 KRLLRDAGLAVTPFVTLTRATAARTGFAEVQSRLGLP-LFVKPANQGSSVGVSKVT---D 200
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807
Y A+E L SF ++L S + +
Sbjct: 201 EAEYTSAVELAL------SFD------------------------TKVLIESAVSGR--- 227
Query: 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867
EI V+G ++ S + V+ S + K+ T + P +
Sbjct: 228 -----------EIECAVLGNEEAVASGCGEIVVRSG--FYSYDSKYIDDTAAEVVVP--A 272
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
+S EA ++ + L G +R+D F+ D+GEVLI E+N++PG T + ++
Sbjct: 273 NISVEASERIRALAVEAFQVLGCAGLARVDVFLT-DSGEVLINEINSLPGFT--RISMYP 329
Query: 928 ALSEQPPMYPHQFFRKVLDLGSER 951
L + M + ++++L E+
Sbjct: 330 KLWQATGMTYSELVTRLIELALEK 353
>gi|293401063|ref|ZP_06645208.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|373451536|ref|ZP_09543456.1| D-alanine-D-alanine ligase [Eubacterium sp. 3_1_31]
gi|291306089|gb|EFE47333.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|371968141|gb|EHO85604.1| D-alanine-D-alanine ligase [Eubacterium sp. 3_1_31]
Length = 354
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 150/392 (38%), Gaps = 52/392 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGD--DLLVRCYYIDRNLNAYAISSAQVYSNT 135
L++ +I GG S+E +SL+SA S++ + D +L+ D AY + +T
Sbjct: 4 LKLAVIFGGKSSEYPVSLHSAASLIRSLHKDKYELIFIGISKDGEWFAYDGDVDAIEHDT 63
Query: 136 PADFD-----FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
D + + +GF L E + VD +FP +HG+ GEDG IQ + E +
Sbjct: 64 WMDGNITPCVLSCSTAQKGFLKLKEDGSYETLPVDCIFPVLHGKNGEDGTIQGLFELSGI 123
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + DK A + M G P + E L + + G
Sbjct: 124 PYVGCDHMSSAICMDKEMAHIVMENAGIPCAPYLCVYEDE----HLDYRHIYEEAKAKLG 179
Query: 251 -KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ +KP AGSS G+ D + K +V++E +E
Sbjct: 180 LPIFIKPANAGSSFGIHKIASFDDFEESMKDAFYHDGRGKVILETTIE------------ 227
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDA-IFNYRRKYLPTQQVAYH--TPPRFPIVV 366
GF+ V+ E+ F GSVD E A F+Y KY Q V H P R +
Sbjct: 228 --GFEIGCAVMGNKEL---FAGSVDEIETAAPFFDYEGKY---QMVDSHIYCPARISKEL 279
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
R A ++ + R+D + P +I+ ++N I G
Sbjct: 280 FEEARSLALKAYRAMNCKGMTRVDMFVTPQQ-----------------SIVMNEVNTIPG 322
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
TS + G ++L +I A +R
Sbjct: 323 FTDTSRYPTMMKEAGIEFGDLLDKLIAFALTR 354
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F +HG GEDGT+Q L E G+PY G M+S CMDK + + + G+
Sbjct: 100 IFPVLHGKNGEDGTIQGLFELSGIPYVGCDHMSSAICMDKEMAHIVME---NAGIPCAPY 156
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+++ L I+ E +KL +KPA G S G+ ++ +D
Sbjct: 157 LCVYEDEHLDYR--HIYEEAKAKLGLPIF-IKPANAGSSFGIHKIASFDDF 204
>gi|203284120|ref|YP_002221860.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly]
gi|226696384|sp|B5RL25.1|DDL_BORDL RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|201083563|gb|ACH93154.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly]
Length = 364
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 161/359 (44%), Gaps = 51/359 (14%)
Query: 82 LICGGPSAERGISLNSARSVLDHI-QGDDLLVRCYYIDRNLNAYAI-----SSAQVYSNT 135
LI GG S E ISL SA + + + D V ++D+ + + SSA++
Sbjct: 7 LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSVFVDKVTGIWYLLDSVPSSAELIKRH 66
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
S+ F + + +D++FP IHGR GEDG IQ ++ ++P VG
Sbjct: 67 TT-------SIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGA 119
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSEVNESELSNWFVTNKLDPNSGKVV 253
G + +KY + + K I V SF+ + + E + NKL+ V+
Sbjct: 120 GILGSAISINKYFCKV-LLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNY---PVI 175
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP+ GSSIG+ VAY V + + I E D VVVE F++ A++
Sbjct: 176 VKPSVLGSSIGINVAYNV----SQIEKYIEEAFEYDLTVVVEKFIKAREIECAVI----- 226
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVIN 368
G D + P E+ +Q D IF +Y KY +P + ++ P + +
Sbjct: 227 GND-QIKIFTPGEIVVQ----------DFIFYDYDAKYSTVPGDSIVFNIPAHLDMKHLL 275
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
I+E A L ++ L L ARID + + T++ +E +T G FTDI++ + M
Sbjct: 276 DIKEYAFLTYKYLELRGMARID-FLISKDTNLLYVNEV---NTIPG---FTDISMFAKM 327
>gi|266620111|ref|ZP_06113046.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
gi|288868339|gb|EFD00638.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
Length = 354
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 46/311 (14%)
Query: 151 GSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDAS 210
G +EF + VD+VFP +HG FGEDG +Q +LE +P+VG G A + DK
Sbjct: 86 GDRAEFVK-----VDVVFPVLHGLFGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTK 140
Query: 211 LEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG 270
+ + G + S++ + E V K + V VKP+ AGSS GV A
Sbjct: 141 IVVDDLGVRQAAYVPVMRSDLGDMEAVVGRVEAKF---TYPVFVKPSNAGSSKGVARA-- 195
Query: 271 VIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQ 328
DS ++ + + E D +++VE ++G A+ G G L+P E
Sbjct: 196 --DSREELEAALYEAAKHDRKILVEEMIKGREIECAV---FGGG-------LVPVEA--- 240
Query: 329 FQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR 388
G ++ +++ KY + P P N++RE A +F+ + AR
Sbjct: 241 -SGVGEILAAAEFYDFDAKYYNSDSRTV-VNPELPGDAANTVREAAKAIFRAVDGYGLAR 298
Query: 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNIL 448
+D +F+ GT++F +IN + G S G S ++
Sbjct: 299 VD-FFVKDD----------------GTVVFNEINTLPGFTAISMYPMLWEAAGVSKDQLV 341
Query: 449 RTIIGHACSRF 459
++ HA R+
Sbjct: 342 DRLVDHAFDRY 352
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 130/325 (40%), Gaps = 77/325 (23%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T + ++ DLGV
Sbjct: 96 VVFPVLHGLFGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKIVVD---DLGVRQAA 152
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVK 753
+ DL V +++ K + VKP+ G S GVAR E+L
Sbjct: 153 YVPVMRSDLGDMEAV------VGRVEAKFTYPVFVKPSNAGSSKGVARADSREELEA--- 203
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
+ E +IL+ E M KG
Sbjct: 204 ------------------ALYEAAKHDRKILVEE----------------------MIKG 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE------KFQGGTGINLTPPPAS 867
EI V G L+P V G+IL+ E K+ + P
Sbjct: 224 R----EIECAVFGG-----GLVP-VEASGVGEILAAAEFYDFDAKYYNSDSRTVVNPE-- 271
Query: 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 927
+ +A + ++ + I A+ G +R+D FV D+G V+ E+NT+PG T + ++
Sbjct: 272 -LPGDAANTVREAAKAIFRAVDGYGLARVDFFVK-DDGTVVFNEINTLPGFT--AISMYP 327
Query: 928 ALSEQPPMYPHQFFRKVLDLGSERF 952
L E + Q +++D +R+
Sbjct: 328 MLWEAAGVSKDQLVDRLVDHAFDRY 352
>gi|168488615|ref|ZP_02712814.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae SP195]
gi|221232408|ref|YP_002511561.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669]
gi|225855101|ref|YP_002736613.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae JJA]
gi|298230136|ref|ZP_06963817.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254425|ref|ZP_06978011.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503415|ref|YP_003725355.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A]
gi|415700134|ref|ZP_11457848.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 459-5]
gi|415750059|ref|ZP_11478003.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae SV35]
gi|415752873|ref|ZP_11479855.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae SV36]
gi|417679635|ref|ZP_12329031.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17570]
gi|418079094|ref|ZP_12716316.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 4027-06]
gi|418081291|ref|ZP_12718501.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 6735-05]
gi|418083476|ref|ZP_12720673.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44288]
gi|418101131|ref|ZP_12738214.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 7286-06]
gi|418123994|ref|ZP_12760925.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44378]
gi|418126321|ref|ZP_12763227.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44511]
gi|418128538|ref|ZP_12765431.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae NP170]
gi|418137733|ref|ZP_12774571.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA11663]
gi|418164966|ref|ZP_12801634.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17371]
gi|418178716|ref|ZP_12815299.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA41565]
gi|418183197|ref|ZP_12819755.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA43380]
gi|418196330|ref|ZP_12832806.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA47688]
gi|418198497|ref|ZP_12834955.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA47778]
gi|418214865|ref|ZP_12841599.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA54644]
gi|418223872|ref|ZP_12850512.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 5185-06]
gi|418234868|ref|ZP_12861444.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA08780]
gi|419425613|ref|ZP_13965809.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 7533-05]
gi|419427728|ref|ZP_13967909.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 5652-06]
gi|419436468|ref|ZP_13976555.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 8190-05]
gi|419445178|ref|ZP_13985193.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA19923]
gi|419447329|ref|ZP_13987334.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 7879-04]
gi|419450946|ref|ZP_13990932.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae EU-NP02]
gi|419473725|ref|ZP_14013574.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA13430]
gi|419484899|ref|ZP_14024674.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA43257]
gi|419508766|ref|ZP_14048417.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA49542]
gi|421279446|ref|ZP_15730252.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA17301]
gi|421287940|ref|ZP_15738703.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA58771]
gi|421294739|ref|ZP_15745460.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA56113]
gi|421301524|ref|ZP_15752194.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA19998]
gi|254767740|sp|B8ZM66.1|DDL_STRPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|254767742|sp|C1CFP2.1|DDL_STRZJ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|6634564|emb|CAB64463.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
gi|6634569|emb|CAB64467.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
gi|183572621|gb|EDT93149.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae SP195]
gi|220674869|emb|CAR69444.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669]
gi|225724220|gb|ACO20073.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Streptococcus
pneumoniae JJA]
gi|298239010|gb|ADI70141.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A]
gi|332072500|gb|EGI82983.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17570]
gi|353746621|gb|EHD27281.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 4027-06]
gi|353752030|gb|EHD32661.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 6735-05]
gi|353754696|gb|EHD35308.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44288]
gi|353770631|gb|EHD51143.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 7286-06]
gi|353795814|gb|EHD76160.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44378]
gi|353796261|gb|EHD76606.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA44511]
gi|353799037|gb|EHD79360.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae NP170]
gi|353828798|gb|EHE08934.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA17371]
gi|353842775|gb|EHE22821.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA41565]
gi|353848180|gb|EHE28197.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA43380]
gi|353860341|gb|EHE40286.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA47688]
gi|353861607|gb|EHE41542.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA47778]
gi|353869595|gb|EHE49476.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA54644]
gi|353878670|gb|EHE58500.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 5185-06]
gi|353886490|gb|EHE66272.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA08780]
gi|353900688|gb|EHE76239.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA11663]
gi|379550889|gb|EHZ15985.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA13430]
gi|379572871|gb|EHZ37828.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA19923]
gi|379581652|gb|EHZ46536.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA43257]
gi|379610720|gb|EHZ75450.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA49542]
gi|379612907|gb|EHZ77622.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 8190-05]
gi|379614869|gb|EHZ79579.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 7879-04]
gi|379617921|gb|EHZ82601.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 5652-06]
gi|379619074|gb|EHZ83748.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 7533-05]
gi|379622651|gb|EHZ87285.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae EU-NP02]
gi|381308520|gb|EIC49363.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae SV36]
gi|381314830|gb|EIC55596.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 459-5]
gi|381318353|gb|EIC59078.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae SV35]
gi|395878939|gb|EJG90001.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA17301]
gi|395886503|gb|EJG97519.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA58771]
gi|395893308|gb|EJH04295.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA56113]
gi|395899084|gb|EJH10028.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA19998]
Length = 347
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 167/395 (42%), Gaps = 79/395 (20%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSA-----QVYS 133
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + S A ++ +
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D+D K+ + S E A +VFP +HG GEDG +Q LE +P+V
Sbjct: 67 NETIDWDKKV--------APSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYV 114
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKV 252
G + A DK + G VP +++G +V ++++ V KL + V
Sbjct: 115 GCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---AYPV 168
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
KP+ GSS+G++ + + L++A + D RV+VE G
Sbjct: 169 FTKPSNMGSSVGISKSENQ-EELRQALKLAFR-YDSRVLVE-----------------QG 209
Query: 313 FDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPI 364
+ E+E+ G+ DV+ KD A ++Y KY+ +V P +
Sbjct: 210 VNAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKVTMDIPAKISD 261
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V+ +R+ A F+ +G +R D ++ T+ G I ++N +
Sbjct: 262 DVVAVMRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTM 304
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G Q S +G S+ ++ ++ A F
Sbjct: 305 PGFTQWSMYPLLWENMGISYPELIERLVDLAKESF 339
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKL-----AYPVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F D + Q N
Sbjct: 195 K------------------------------LAF----RYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + +++ PA I S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDI---PAKI-SDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L E
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWEN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|423015710|ref|ZP_17006431.1| D-alanine--D-alanine ligase [Achromobacter xylosoxidans AXX-A]
gi|338781213|gb|EGP45606.1| D-alanine--D-alanine ligase [Achromobacter xylosoxidans AXX-A]
Length = 316
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 155/387 (40%), Gaps = 82/387 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S V A+ SA V ++
Sbjct: 7 KVGVLYGGRSAEREVSLMSGAGVHQ---------------------ALLSAGVDAHL--- 42
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G SL+E A A + VF +HGRFGEDG IQ LE +P+ G+G
Sbjct: 43 FD-------TGERSLAELA---AEGFERVFIALHGRFGEDGSIQGALELLGIPYTGSGPL 92
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN--SGKVVVKP 256
A A DK M+K+ +L G E EL + +L P+ S +++KP
Sbjct: 93 ASALAMDK-----TMTKR------VWLQHGLPTPEFELLDADTELRLVPDRLSLPLIIKP 141
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GS++G+T G D +K A + + D V+ E F++ G E T +L G
Sbjct: 142 PHEGSTVGITKVVGYSD-MKDAYALAAK-FDAEVLAEQFIQ-GRELTVAILGGGKTARAL 198
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
PV +++ ++Y KY + Y P P V + + A
Sbjct: 199 PV--------------IEIAAPGGNYDYEHKYF-SDDTQYFCPATLPPAVAEEVADIAVR 243
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
++ LG + R D F+ + + W ++N GM S +
Sbjct: 244 AYRALGCEGWGRAD--FMLDADN-----------RPW----LLEMNTSPGMTGHSLVPMA 286
Query: 437 ASKVGFSHSNILRTIIGHACSRFPNLA 463
A G S++ + I+ A + + A
Sbjct: 287 ARATGMSYAELCVAILADASCKLHSAA 313
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 119/298 (39%), Gaps = 78/298 (26%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 686
+LA E VFIA+HG GEDG++Q LE G+PYTG G +AS MDK T + L H
Sbjct: 52 ELAAEGFERVFIALHGRFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHG 111
Query: 687 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
+ +L + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPEFELLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
D+ ++++ A E+L E F++ E
Sbjct: 156 YSDMK---------------DAYALAAKF------DAEVLA-EQFIQGRE---------- 183
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP- 863
+TV ++G G +P + + G E K+ P
Sbjct: 184 ---------------LTVAILGG-GKTARALPVIEIAAPGGNYDYEHKYFSDDTQYFCPA 227
Query: 864 --PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PPA ++ E D + AL EG+ R D ++ DN ++E+NT PGMT
Sbjct: 228 TLPPA--VAEEVADIAVRAY----RALGCEGWGRADFMLDADN-RPWLLEMNTSPGMT 278
>gi|417699054|ref|ZP_12348225.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA41317]
gi|419453835|ref|ZP_13993805.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae EU-NP03]
gi|419506555|ref|ZP_14046216.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA49194]
gi|332199700|gb|EGJ13775.1| D-alanine--D-alanine ligase family protein [Streptococcus
pneumoniae GA41317]
gi|379608469|gb|EHZ73215.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae GA49194]
gi|379625905|gb|EHZ90531.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae EU-NP03]
Length = 347
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 167/395 (42%), Gaps = 79/395 (20%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSA-----QVYS 133
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + S A ++ +
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D+D K+ + S E A +VFP +HG GEDG +Q LE +P+V
Sbjct: 67 NETIDWDKKV--------APSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYV 114
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKV 252
G + A DK + G VP +++G +V ++++ V KL + V
Sbjct: 115 GCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---AYPV 168
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
KP+ GSS+G++ + + L++A + D RV+VE G
Sbjct: 169 FTKPSNMGSSVGISKSENQ-EELRQALKLAFR-YDSRVLVE-----------------QG 209
Query: 313 FDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPI 364
+ E+E+ G+ DV+ KD A ++Y KY+ +V P +
Sbjct: 210 VNAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKVTMDIPAKISD 261
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V+ +R+ A F+ +G +R D ++ T+ G I ++N +
Sbjct: 262 DVVAVMRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTM 304
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G Q S +G S+ ++ ++ A F
Sbjct: 305 PGFTQWSMYPLLWDNMGISYPKLIERLVDLAKESF 339
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKL-----AYPVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F D + Q N
Sbjct: 195 K------------------------------LAF----RYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + +++ PA I S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDI---PAKI-SDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPKLIERLVDLAKESF 339
>gi|339484873|ref|YP_004696659.1| D-alanine--D-alanine ligase [Nitrosomonas sp. Is79A3]
gi|338807018|gb|AEJ03260.1| D-alanine--D-alanine ligase [Nitrosomonas sp. Is79A3]
Length = 305
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 140/333 (42%), Gaps = 65/333 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER ISL S ++VLD ++ ++AY A+
Sbjct: 8 KVAVLLGGRSAEREISLQSGQAVLDALR-----------RSGVDAYPFDPAEQALEELVH 56
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
DFK F +HGRFGEDG IQ VLE +P+ G+G
Sbjct: 57 QDFKR-----------------------AFIALHGRFGEDGTIQGVLEWLGLPYTGSGVM 93
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK+ L G I P + L ++ N +++ T L ++VKP R
Sbjct: 94 ASALAMDKWRTKLIWQATG-IQSPRYELLQADSNFEQVAE---TLGL-----PLIVKPAR 144
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS+IG++ + D L +A + + D V+ E F+ G+E T +L G PV
Sbjct: 145 EGSTIGLSKVHHKQD-LAEAYRLAAQH-DALVLAEEFI-AGTELTVAIL----GETSLPV 197
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
V + EL ++Y+ KY + + Y P P + + I+ A +
Sbjct: 198 VRIEIAGEL--------------YDYQAKYF-SNETKYFCPSGLPDELESIIQNQALRAY 242
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 411
Q LG + R+D ++ F + T G T
Sbjct: 243 QVLGCQGWGRVDLILSQTNQFYFLEANTSPGMT 275
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 127/311 (40%), Gaps = 81/311 (26%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P ++ E L ++ FIA+HG GEDGT+Q +LE G+PYTG GVMAS MDK
Sbjct: 46 PAEQALEE---LVHQDFKRAFIALHGRFGEDGTIQGVLEWLGLPYTGSGVMASALAMDKW 102
Query: 679 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 738
T L + + +LL+ D E ++ L VKPAR+G + G
Sbjct: 103 RTKL---------IWQATGIQSPRYELLQA---DSNFEQVAETLGLPLIVKPAREGSTIG 150
Query: 739 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 798
++++ +DL + A+ + + +++ E F+
Sbjct: 151 LSKVHHKQDL-------------------AEAYRLAAQHDA---LVLAEEFIAG------ 182
Query: 799 SQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG 858
E+TV ++G+ +P V ++ +G++ + K+
Sbjct: 183 -------------------TELTVAILGETS-----LPVVRIEIAGELYDYQAKYFSNET 218
Query: 859 INLTPPP-----ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913
P SI+ +AL + L +G+ R+D ++ N + +E N
Sbjct: 219 KYFCPSGLPDELESIIQNQALRAYQ--------VLGCQGWGRVDLILSQTN-QFYFLEAN 269
Query: 914 TVPGMTPSTVL 924
T PGMT +++
Sbjct: 270 TSPGMTNHSLV 280
>gi|317125447|ref|YP_004099559.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043]
gi|315589535|gb|ADU48832.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043]
Length = 394
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 162/402 (40%), Gaps = 65/402 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV +I GG S+E +S +A V+ I D + + R+ + ++ PA
Sbjct: 31 RVAIIFGGRSSEHAVSCATAAGVMRAIDRDKYDIVPIGVSRD------GQWVLVADDPAR 84
Query: 139 FDFK-------LESLAQGFGSLSEFAEHLA-----------ANVDIVFPTIHGRFGEDGG 180
F+ L A LS L +VD+V P +HG FGEDG
Sbjct: 85 FELTAGRTPEVLPDRAHVVLPLSTRDTALTVLEAGQPPRELGDVDVVLPLLHGPFGEDGT 144
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
+Q LE ++ +VG+G A DK+ + + G P ++ +
Sbjct: 145 LQGFLELSDIRYVGSGVFASAAGMDKHYMKVVFAGHGLPVGPYAVITDRAWRADRAAALD 204
Query: 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVA--YGVID-SLKKAKGIILEGIDDRVVVELFLE 297
LD V VKP RAGSS+G++ G+++ ++++A+ D +V+VE +
Sbjct: 205 SCAALD---FPVFVKPARAGSSMGISKVDDPGLLEAAIERAR-----EHDPKVIVEAGIT 256
Query: 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ-GSVDVREKDAIFNYRRKYLPTQQVAY 356
G E VL+ G G T+ Q G V V + A +++ KYL V
Sbjct: 257 -GREIECAVLE-GHG----------TQGPRTSQVGEVAVHDNHAFYDFEAKYLAEADVDL 304
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P P V + +R ++ F+ LG AR+D ++ E G +
Sbjct: 305 SCPADVPAHVSDEVRRLSAAAFEALGCEGLARVDCFY-----------------AEDGRV 347
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
L +IN + G S + + G ++ ++ +I A R
Sbjct: 348 LINEINTMPGFTPHSMYPRMWAASGLPYTALIDELISLALVR 389
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 117/294 (39%), Gaps = 69/294 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL-NHLADLG---VL 693
V +HG GEDGTLQ LE + Y G GV AS MDK + H +G V+
Sbjct: 131 VLPLLHGPFGEDGTLQGFLELSDIRYVGSGVFASAAGMDKHYMKVVFAGHGLPVGPYAVI 190
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL----CVKPARDGCSTGVARLCCAEDLT 749
T + L + C L VKPAR G S G++++ +D
Sbjct: 191 TDRAWRADRAAALDS--------------CAALDFPVFVKPARAGSSMGISKV---DDPG 233
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
+ A+E +R H +P +++ + T + +
Sbjct: 234 LLEAAIER----------AREH------DP--------------KVIVEAGITGREIECA 263
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
+ +G+ G G S + V V ++ E K+ ++L+ P + +
Sbjct: 264 VLEGH-----------GTQGPRTSQVGEVAVHDNHAFYDFEAKYLAEADVDLSCP--ADV 310
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
D+ ++ AL EG +R+D F ++G VLI E+NT+PG TP ++
Sbjct: 311 PAHVSDEVRRLSAAAFEALGCEGLARVDCFY-AEDGRVLINEINTMPGFTPHSM 363
>gi|227874805|ref|ZP_03992958.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
gi|306818097|ref|ZP_07451828.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
gi|227844580|gb|EEJ54736.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
gi|304649061|gb|EFM46355.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
Length = 374
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 161/395 (40%), Gaps = 50/395 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RV +I GG S E IS +A VL+HI + I R A+ + +V + D
Sbjct: 8 RVAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRG-GAWVLMPDEVEALRLQD 66
Query: 139 FDFKLESLAQGFGSLSEFAEHL--------------AANVDIVFPTIHGRFGEDGGIQEV 184
+ F +L +HL +D+V P +HG +GEDG IQ +
Sbjct: 67 GQGAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGL 126
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
E VP+ G G A DK + ++ ++G I V F + S V +
Sbjct: 127 CEMVGVPYTGCGVTASALCMDK-GYTKQVLERGGIPVGRFHVITDYAWRHRESA--VPAE 183
Query: 245 LDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEF 302
+ V VKP+RAGSS+GV+ +++ ++ + ++ D +V+VE + G E
Sbjct: 184 VLDFGLPVFVKPSRAGSSLGVS----RVEAWEEFEAAVVAARRHDPKVIVEAGVVGAREV 239
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL+ G F G V +++ ++++ KY V+ P +
Sbjct: 240 ECAVLEGRDG----------AAPRTAFPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQI 289
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P +V I + A F+ + AR+D +++ E G ++ +IN
Sbjct: 290 PELVAKRICDYARQAFELVSGEGLARVDFFYV----------------EETGRLILNEIN 333
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
+ GM S +G + +++ +I A S
Sbjct: 334 TMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIALS 368
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 126/303 (41%), Gaps = 71/303 (23%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTINKDV- 699
+HG GEDGT+Q L E GVPYTG GV AS CMDK T L +G + D
Sbjct: 113 LHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYA 172
Query: 700 -RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 758
R +E + ++D + VKP+R G S GV+R+ E+ V A
Sbjct: 173 WRHRESAVPAEVLDF---------GLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVA---- 219
Query: 759 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNADRLMWKGNSRW 817
+R H P++++ V E+ + + + A R + G
Sbjct: 220 ---------ARRHD--------PKVIVEAGVVGAREVECAVLEGRDGAAPRTAFPGE--- 259
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP--ASIMSTEALD 875
V +K++ + E K+ ++L+ P +++ D
Sbjct: 260 --------------------VVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICD 299
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 935
+Q EL++ EG +R+D F + G +++ E+NT+PGMTP ++ P M
Sbjct: 300 YARQAFELVSG----EGLARVDFFYVEETGRLILNEINTMPGMTPFSLF--------PGM 347
Query: 936 YPH 938
+ H
Sbjct: 348 WEH 350
>gi|257486598|ref|ZP_05640639.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|422680735|ref|ZP_16739006.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|331010080|gb|EGH90136.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 363
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 157/388 (40%), Gaps = 51/388 (13%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S+E +SL SAR+V++ I + + +D+ A N
Sbjct: 5 VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64
Query: 140 DFKLESLAQGFGSL-----SEFAE----HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
KL + + L +F E A +D+VFP IHG FGEDG +Q VL V
Sbjct: 65 RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
PFVG A DK D + + + I V F+ G E+ LS +L
Sbjct: 125 PFVGADVLASAACMDK-DVTKRLLRDAGIAVAPFM--GLSRGET-LSFADAATQLGL--- 177
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP GSS+GV+ V D + L D +L +E G VG
Sbjct: 178 PMFVKPANQGSSVGVS---KVSDEAGFVAALALGFEFDH---KLLIEQGI--------VG 223
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
+C VL + ++ G +V D + Y KYL Q P FP + + +
Sbjct: 224 REVEC--AVLGNFDAQVSVCG--EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQV 279
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
RE A ++ LG +R+D F ++T+ I+ ++N + G
Sbjct: 280 REVALQAYKVLGCAGLSRVD----------FFVTDTR-------DIIINEVNTLPGFTSI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G +++ ++ +I A R
Sbjct: 323 SMYPKLWQASGLTYAELIHRLIVLALER 350
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 122/319 (38%), Gaps = 72/319 (22%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG LQ +L VP+ G V+AS CMDK T L D G+
Sbjct: 100 VVFPLIHGAFGEDGALQGVLRMLAVPFVGADVLASAACMDKDVTK---RLLRDAGIAVAP 156
Query: 697 -KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+ R E L + + ++L + VKPA G S GV+++ D +V AL
Sbjct: 157 FMGLSRGETL-------SFADAATQLGLP-MFVKPANQGSSVGVSKV---SDEAGFVAAL 205
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
A G E D L Q
Sbjct: 206 --------------ALGF-----------------EFDHKLLIEQGIVGR---------- 224
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMSTE 872
E+ V+G + S+ V + + + + K+ G + P PA +
Sbjct: 225 ---EVECAVLGNFDAQVSVCGEVIAND--EFYAYDTKYLNGDQARIAIPAEFPADLS--- 276
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
D+ ++ L G SR+D FV D +++I EVNT+PG T ++ ++ L +
Sbjct: 277 --DQVREVALQAYKVLGCAGLSRVDFFVT-DTRDIIINEVNTLPGFT--SISMYPKLWQA 331
Query: 933 PPMYPHQFFRKVLDLGSER 951
+ + +++ L ER
Sbjct: 332 SGLTYAELIHRLIVLALER 350
>gi|357588983|ref|ZP_09127649.1| D-alanyl-alanine synthetase A [Corynebacterium nuruki S6-4]
Length = 362
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 109/393 (27%), Positives = 157/393 (39%), Gaps = 60/393 (15%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN------------LNAYAI 126
RV ++ GG S E +S SA +V+ H+ + V I N L A+
Sbjct: 13 RVAVLYGGHSDEHSVSCISAAAVIGHLDPERYEVVPVGITENGRWVKGTTDTDKLTAHGR 72
Query: 127 SSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
V E+ F S L A VD+VFP +HGR GEDG +Q +LE
Sbjct: 73 ELPTVGGGRSVHLTLGGEAKEFRFDDGS-----LYAAVDVVFPVLHGRDGEDGTVQGLLE 127
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
VP+VG G A DK E +K I S + G EV +E + +
Sbjct: 128 LAGVPYVGNGVLASAACMDK-----EYTK--LIARASGIPVGDEVVLTERRE-LTAAEHE 179
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
V VKP R GSSIG+T D+L A + + D +V+VE L G E V
Sbjct: 180 QLGLPVFVKPARGGSSIGIT-KVSDWDALPAALDLAFDH-DSKVLVEAMLH-GVEVECGV 236
Query: 307 LDV--GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
L G+ HP +L TE + + + KYL ++Y P P
Sbjct: 237 LQYPDGTVHASHPSLLKGTE-----------DGPEGFYGFDTKYL-DDIISYEIPAPLPD 284
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
+++R A F+ LG AR+D +F+ V + T G FT I++
Sbjct: 285 GQADAVRRWAVETFRALGCEGLARVD-FFVTEDGPVLNEPNTMPG--------FTPISMY 335
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
M + S G ++ +L +I A +
Sbjct: 336 PKMFEAS---------GVAYPELLDILIARALA 359
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 21/110 (19%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV+AS CMDK T L + D VL
Sbjct: 108 VFPVLHGRDGEDGTVQGLLELAGVPYVGNGVLASAACMDKEYTKLIARASGIPVGDEVVL 167
Query: 694 TINKDVRRKE-DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
T +++ E + L P+ VKPAR G S G+ ++
Sbjct: 168 TERRELTAAEHEQLGLPVF----------------VKPARGGSSIGITKV 201
>gi|15805391|ref|NP_294085.1| D-alanyl-alanine synthetase A [Deinococcus radiodurans R1]
gi|22095571|sp|Q9RXF1.1|DDL_DEIRA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|6458038|gb|AAF09941.1|AE001896_6 D-alanine--D-alanine ligase [Deinococcus radiodurans R1]
Length = 339
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 146/376 (38%), Gaps = 49/376 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
R+ L+ GG S E +SL SARSVL + D V I + + Q T
Sbjct: 4 RILLLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPTETQKALETGVS 63
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+QG G L A D VFP +HG GEDG IQ +L +PFVG+G
Sbjct: 64 --------SQG-GDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVL 114
Query: 199 ACRQAFDKYDASLEMSKQGFIT--VPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
+ DK M+KQ + +P + + E + + V + + VKP
Sbjct: 115 GSAVSMDKV-----MTKQVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGYPLFVKP 169
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
GSS+G++ G + L A + G+D RV++E +V G +
Sbjct: 170 ANLGSSVGIS-KVGSPEELDAALTLAF-GLDRRVILEAMTPHKPR------EVEVGILGN 221
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
V + EL F ++Y KY + H P R P V IR A
Sbjct: 222 DVPVASPVGELSFDAD--------FYDYETKYT-EGRAEMHIPARIPPEVSERIRTEALR 272
Query: 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ 436
F+ L AR+D +++ E G + ++N + G TS +
Sbjct: 273 AFRALDCAGLARVDFFYV----------------EETGELFLNEVNTMPGFTTTSMYPKL 316
Query: 437 ASKVGFSHSNILRTII 452
G S+S ++ ++
Sbjct: 317 FEAAGLSYSELVTRLV 332
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 124/321 (38%), Gaps = 90/321 (28%)
Query: 631 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 690
A E VF +HG +GEDGT+Q LL G+P+ G GV+ S MDKV T L+ A +
Sbjct: 76 AAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTKQVLDS-AGI 134
Query: 691 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLCC 744
+ VRR+ W + ++ + L VKPA G S G++++
Sbjct: 135 PQVAWRLAVRRE-----------WQQTPDAVRARAAELGYPLFVKPANLGSSVGISKVGS 183
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
E+L + + A G+ ++ + + +K
Sbjct: 184 PEELDA---------------ALTLAFGL------------------DRRVILEAMTPHK 210
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP- 863
E+ VG++G + S P + D E K+ G P
Sbjct: 211 PR------------EVEVGILGNDVPVAS--PVGELSFDADFYDYETKYTEGRAEMHIPA 256
Query: 864 --PP--ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PP + + TEAL + AL G +R+D F + GE+ + EVNT+PG T
Sbjct: 257 RIPPEVSERIRTEALRAFR--------ALDCAGLARVDFFYVEETGELFLNEVNTMPGFT 308
Query: 920 PSTVLIHQALSEQPPMYPHQF 940
++ MYP F
Sbjct: 309 TTS------------MYPKLF 317
>gi|169334678|ref|ZP_02861871.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM
17244]
gi|169257416|gb|EDS71382.1| D-ala D-ala ligase N-terminal domain protein [Anaerofustis
stercorihominis DSM 17244]
Length = 358
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 158/384 (41%), Gaps = 46/384 (11%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGD--DLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
VG++ GG S E +SL SA +V++ I + D+ + ++ Y ++ +N
Sbjct: 7 VGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKTNEWI 66
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
+ L S S F + NVDI+FP +HG+ GEDG IQ + E + P+VG
Sbjct: 67 NDSKNLIS------DFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEV 120
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK A G V L+ +++ +L + + + VKP
Sbjct: 121 LASSVCMDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEENLPYPMFVKPV 180
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSS+G++ A DSLK+A +L+ + D +++VE A ++V +
Sbjct: 181 NMGSSVGISKAKDR-DSLKEA---LLKAVKFDTKILVE------KGINAREIEVAVLGNS 230
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
HP P E+ V +E ++Y KYL P + +I IR A
Sbjct: 231 HPEASYPGEI-------VSCKE---FYDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAV 280
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F+ +G +R+D +FL + I + N + G S +
Sbjct: 281 KAFKAVGGSGLSRVD-FFLDKDSK---------------DIYLNEANTLPGFTNISMYAK 324
Query: 436 QASKVGFSHSNILRTIIGHACSRF 459
+G +S+++ +I R+
Sbjct: 325 MWDYMGIGYSDLIEKLIDLGFERY 348
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 141/349 (40%), Gaps = 84/349 (24%)
Query: 625 NEWIKLAKE--------------NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
NEWI +K N +F +HG GEDG +Q L E PY G V+A
Sbjct: 63 NEWINDSKNLISDFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLA 122
Query: 671 SKTCMDK-----VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT 725
S CMDK + S+ + + D VL N D+ + LL+ + L
Sbjct: 123 SSVCMDKDIAKRIFRSVGIPVVDD--VLVFNTDIET-DKLLEATLDRCEENLPY-----P 174
Query: 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 785
+ VKP G S G+++ A+D +L+E LL+
Sbjct: 175 MFVKPVNMGSSVGISK---AKDRD----SLKEALLK------------------------ 203
Query: 786 FEPFVETDEILFSSQSTNKNADRLMWKG-NSRWVEITVGVIGKCGSMHSLMPS-VTVKES 843
+ F ++ L+ KG N+R EI V V+G S V+ KE
Sbjct: 204 --------AVKFDTKI-------LVEKGINAR--EIEVAVLGNSHPEASYPGEIVSCKEF 246
Query: 844 GDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD 903
D E K+ G G + P + + ++K + A+ G SR+D F++ D
Sbjct: 247 YD---YEAKYLSGDGSRIDIPAK--IDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKD 301
Query: 904 NGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ ++ + E NT+PG T + ++ + + + K++DLG ER+
Sbjct: 302 SKDIYLNEANTLPGFT--NISMYAKMWDYMGIGYSDLIEKLIDLGFERY 348
>gi|256394928|ref|YP_003116492.1| D-alanine--D-lactate ligase [Catenulispora acidiphila DSM 44928]
gi|256361154|gb|ACU74651.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
Length = 346
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 161/396 (40%), Gaps = 83/396 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDH------------IQGDDLLVRCYYIDRNLNAYA 125
L +G++ GG S E IS+ SAR V + I D C + N A
Sbjct: 4 LNIGIMFGGCSEEHPISVKSAREVAKNLDTSKYEPFYIGITRDGAWRLCDGPEENWENGA 63
Query: 126 ISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVL 185
A V +P L L QG + A +D+V P +HG+ GEDG IQ +L
Sbjct: 64 SRPAVV---SPDRGAHGLLVLDQG--------RYEAIRLDLVLPVLHGKLGEDGAIQGLL 112
Query: 186 EKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT--N 243
E +P+VG + DK L + +G I P F W +T
Sbjct: 113 ELAGIPYVGCDVQTSVLCIDKTLTYLVIQNEG-IATPRF--------------WTLTPDE 157
Query: 244 KLDPNS--GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGG 299
K+DPN V VKP R+GSS GV+ G D L G I E D +V++E + G
Sbjct: 158 KIDPNELPYPVFVKPARSGSSFGVSKVSGK-DEL---SGAIEEARLYDAKVLIEEAVV-G 212
Query: 300 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAY 356
SE VL G+G D LL EV+ V F ++ P ++ +
Sbjct: 213 SEIGCAVL--GTGED-----LLVGEVD-------RVALTHGFFKIHQESAPETGSENATF 258
Query: 357 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416
P P I+E A L+++ LG +R+D +FL E GT+
Sbjct: 259 IVPADIPAQSRALIQETAKLVYRALGCRGLSRVD-FFL----------------KEDGTV 301
Query: 417 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452
+ ++N + G+ S + + GF S ++ ++
Sbjct: 302 VLNEVNTLPGLTSYSRYPRMMAAAGFPMSEVIDRLV 337
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 21/125 (16%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 695
V +HG +GEDG +Q LLE G+PY G V S C+DK T L + + +A T+
Sbjct: 94 VLPVLHGKLGEDGAIQGLLELAGIPYVGCDVQTSVLCIDKTLTYLVIQNEGIATPRFWTL 153
Query: 696 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
D + + L P+ VKPAR G S GV+++ ++L+ A+
Sbjct: 154 TPDEKIDPNELPYPVF----------------VKPARSGSSFGVSKVSGKDELS---GAI 194
Query: 756 EECLL 760
EE L
Sbjct: 195 EEARL 199
>gi|203287658|ref|YP_002222673.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1]
gi|226696385|sp|B5RR18.1|DDL_BORRA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|201084878|gb|ACH94452.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1]
Length = 364
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 161/359 (44%), Gaps = 51/359 (14%)
Query: 82 LICGGPSAERGISLNSARSVLDHI-QGDDLLVRCYYIDRNLNAYAI-----SSAQVYSNT 135
LI GG S E ISL SA + + + D V ++D+ + + SSA++
Sbjct: 7 LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSIFVDKVTGIWYLLDSVPSSAELIKRH 66
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
S+ F + + +D++FP IHGR GEDG IQ ++ ++P VG
Sbjct: 67 TT-------SIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGA 119
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSEVNESELSNWFVTNKLDPNSGKVV 253
G + +KY + + K I V SF+ + + E + NKL+ V+
Sbjct: 120 GILGSAISINKYFCKV-LLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNY---PVI 175
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP+ GSSIG+ VAY V + + I E D VVVE F++ A++
Sbjct: 176 VKPSVLGSSIGINVAYNV----SQIEKYIEEAFEYDLTVVVEKFIKAREIECAVI----- 226
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVIN 368
G D + P E+ +Q D IF +Y KY +P + ++ P + +
Sbjct: 227 GND-QIKIFTPGEIVVQ----------DFIFYDYDAKYSTVPGDSIVFNIPAHLDMKHLL 275
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
I+E A L ++ L L ARID + + T++ +E +T G FTDI++ + M
Sbjct: 276 DIKEYAFLTYKYLELRGMARID-FLISKDTNLLYVNEV---NTIPG---FTDISMFAKM 327
>gi|6634559|emb|CAB64459.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
Length = 347
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 167/395 (42%), Gaps = 79/395 (20%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN---LNAYAISSA-----QVYS 133
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + S A ++ +
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRLMT 66
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D+D K+ + S E A +VFP +HG GEDG +Q LE +P+V
Sbjct: 67 NETIDWDKKV--------APSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYV 114
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKV 252
G + A DK + G VP +++G +V ++++ V KL + V
Sbjct: 115 GCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---AYPV 168
Query: 253 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312
KP+ GSS+G++ + + L++A + D RV+VE G
Sbjct: 169 FTKPSNMGSSVGISKSENQ-EELRQALKLAFR-YDSRVLVE-----------------QG 209
Query: 313 FDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPI 364
+ E+E+ G+ DV+ KD A ++Y KY+ +V P +
Sbjct: 210 VNAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKVTMDIPAKISD 261
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V+ +R+ A F+ +G +R D ++ T+ G I ++N +
Sbjct: 262 DVVAVMRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTM 304
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G Q S +G S+ ++ ++ A F
Sbjct: 305 PGFTQWSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKL-----AYPVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F D + Q N
Sbjct: 195 K------------------------------LAF----RYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + +++ PA I S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDI---PAKI-SDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|429090572|ref|ZP_19153285.1| D-alanine--D-alanine ligase B [Cronobacter dublinensis 1210]
gi|426744922|emb|CCJ79398.1| D-alanine--D-alanine ligase B [Cronobacter dublinensis 1210]
Length = 306
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 137/328 (41%), Gaps = 83/328 (25%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L +E VFIA+HG GEDGTLQ L+ G+PYTG GVMAS MDK T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGTLDYLGLPYTGSGVMASAITMDKRRTKL-LWQGAG 108
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 743
L V + RR DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVASWVALERR----------DIASGLSETLTARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 804 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILG-----DEILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 861 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
P +AL Q + L A L +G+ R+D + D GE ++EVNT PGMT
Sbjct: 224 FCPSGIDADREQAL----QALVLEAWRVLGCQGWGRVDVMQDSD-GEFYLLEVNTAPGMT 278
Query: 920 PSTVLIHQALSEQPPMYPHQFFRKVLDL 947
+++ A Q M Q ++L+L
Sbjct: 279 SHSLVPMAA--RQAGMSFSQLVVRILEL 304
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 155/379 (40%), Gaps = 85/379 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SL S +VL ++ + ++AYAI V T +
Sbjct: 4 KIAVLLGGSSAEREVSLQSGSAVLAGLK-----------EAGVDAYAIDPRDVCVTTLKE 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+GF D VF +HGR GEDG +Q L+ +P+ G+G
Sbjct: 53 ---------EGF--------------DKVFIALHGRGGEDGTLQGTLDYLGLPYTGSGVM 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK L G L+ ++ S LS +T ++ V+VKP+R
Sbjct: 90 ASAITMDKRRTKLLWQGAGLPVASWVALERRDIA-SGLSE-TLTARIAALGLPVIVKPSR 147
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GSS+G++ ++L A + E D V+VE +L G EFT +L G + P
Sbjct: 148 EGSSVGMSKVDSA-EALLPALELAFEH-DSEVLVEKWLS-GPEFTVAIL----GDEILP- 199
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA--SL 376
S+ ++ ++Y KYL + + Y P I++ RE A +L
Sbjct: 200 -------------SIRIQPAGVFYDYEAKYL-SDETQYFCPSG-----IDADREQALQAL 240
Query: 377 LFQR---LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
+ + LG + R+D V S+ G ++N GM S +
Sbjct: 241 VLEAWRVLGCQGWGRVD---------VMQDSD--------GEFYLLEVNTAPGMTSHSLV 283
Query: 434 FQQASKVGFSHSNILRTII 452
A + G S S ++ I+
Sbjct: 284 PMAARQAGMSFSQLVVRIL 302
>gi|421299133|ref|ZP_15749820.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA60080]
gi|395900604|gb|EJH11542.1| D-alanine--D-alanine ligase 2 [Streptococcus pneumoniae GA60080]
Length = 347
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 166/398 (41%), Gaps = 85/398 (21%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA---- 137
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQEES 63
Query: 138 -------DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
D+D K+ + S E A +VFP +HG GEDG +Q LE +
Sbjct: 64 LMTNETIDWDKKV--------APSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKM 111
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNS 249
P+VG + A DK + G VP +++G +V ++++ V KL +
Sbjct: 112 PYVGCNILSSSLAMDKITTKRVLESAGIAQVPYVAIVEGDDVT-AKIAE--VEEKL---A 165
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V KP+ GSS+G++ + + L++A + D RV+VE
Sbjct: 166 YPVFTKPSNMGSSVGISKSENQ-EELRQALKLAFR-YDSRVLVE---------------- 207
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPR 361
G + E+E+ G+ DV+ KD A ++Y KY+ ++ P +
Sbjct: 208 -QGVNAR-------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPAK 258
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
V+ +R+ A F+ +G +R D ++ T+ G I ++
Sbjct: 259 ISDDVVAVMRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNEL 301
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
N + G Q S +G S+ ++ ++ A F
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLAKESF 339
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---AGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +L + KP+ G S G+++ E+L +
Sbjct: 140 AQVPYVAIVEGDDVTAKIAEVEEKL-----AYPVFTKPSNMGSSVGISKSENQEELRQAL 194
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
K L F D + Q N
Sbjct: 195 K------------------------------LAF----RYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIPAK--ISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|158321878|ref|YP_001514385.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
gi|158142077|gb|ABW20389.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
Length = 349
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 159/395 (40%), Gaps = 67/395 (16%)
Query: 80 VGLICGGPSAERGISLNSARSVLDH--IQGDDLLVRCYYIDRNLNAYAISSAQVYSNT-- 135
V +I GG S+E +SL SA +V+++ I+ D++ D Y + ++ NT
Sbjct: 6 VAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIKENTWF 65
Query: 136 -----------PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEV 184
P D K+ + E + +DIVFP +HGR GEDG +Q +
Sbjct: 66 LDGSCRQIMLSPNKGDRKIIEIHPN--------EFVHTQIDIVFPVLHGRNGEDGTLQGL 117
Query: 185 LEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNK 244
E +P+VG A DK A + GF VP + + E E+ NK
Sbjct: 118 FEITGIPYVGCDVAASSICIDKDYAHKIVQYAGF-DVPQSIAIDNRTKEDEI------NK 170
Query: 245 LDPNSGK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
N G + VKP+R GSSIG+T A D + + + +D +VV+E +EG
Sbjct: 171 FAENVGYPIYVKPSREGSSIGITKAENHSDLMGGIEAAL--KLDGKVVLEENIEG----- 223
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
+VG + +++ T E++ + F++ KY Q H P R
Sbjct: 224 ---FEVGCAILGNDDLIVGTVDEIEV--------PNGFFDFTEKY-TLQNSKIHLPARID 271
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ I+E +++ LG +R+D H I+F ++N
Sbjct: 272 QDLSERIKEIGKGIYKALGCSGLSRVD--LFVDKNH---------------RIVFNEVNT 314
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
+ G S G ++ +IL +I R
Sbjct: 315 LPGFTTGSRFPNMLLHAGIAYRDILDKLIDLGMQR 349
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VF +HG GEDGTLQ L E G+PY G V AS C+DK + + +I
Sbjct: 100 VFPVLHGRNGEDGTLQGLFEITGIPYVGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAI 159
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
D R KED + ++ + + VKP+R+G S G+ + DL ++A
Sbjct: 160 DNRTKEDEINKFAENVGY---------PIYVKPSREGSSIGITKAENHSDLMGGIEA 207
>gi|429103528|ref|ZP_19165502.1| D-alanine--D-alanine ligase B [Cronobacter turicensis 564]
gi|426290177|emb|CCJ91615.1| D-alanine--D-alanine ligase B [Cronobacter turicensis 564]
Length = 306
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 136/328 (41%), Gaps = 83/328 (25%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 689
L +E VFIA+HG GEDGTLQ LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 690 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 743
L V RR DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERR----------DIRGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
A+ L + ALE L FE E+L
Sbjct: 159 SAQAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 804 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILG-----DDILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 861 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
P +AL Q + L A L G+ R+D + D GE ++EVNT PGMT
Sbjct: 224 FCPAGIDAGREQAL----QALVLEAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPGMT 278
Query: 920 PSTVLIHQALSEQPPMYPHQFFRKVLDL 947
+++ A Q M Q ++L+L
Sbjct: 279 SHSLVPMAA--RQAGMSFSQLVVRILEL 304
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 155/382 (40%), Gaps = 91/382 (23%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SL S +VL ++ ++AYA+ V T +
Sbjct: 4 KIAVLLGGSSAEREVSLQSGSAVLAGLK-----------QAGVDAYAVDPRDVCVTTLKE 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+GF D VF +HGR GEDG +Q LE +P+ G+G
Sbjct: 53 ---------EGF--------------DKVFIALHGRGGEDGTLQGTLEYLGLPYTGSGVM 89
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A DK L G P L+ ++ LS ++ ++ V+VKP+R
Sbjct: 90 ASAITMDKLRTKLLWQGAGLPVAPWVALERRDIR-GGLSE-ALSARIAALGLPVIVKPSR 147
Query: 259 AGSSIGVTVAYGVIDS---LKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSS+G++ +DS L A + E D V+VE +L G EFT +L G D
Sbjct: 148 EGSSVGMS----KVDSAQALLPALELAFEH-DSEVLVEKWLS-GPEFTVAIL----GDDI 197
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA- 374
P S+ ++ ++Y KYL + + Y P I++ RE A
Sbjct: 198 LP--------------SIRIQPAGVFYDYEAKYL-SDETQYFCPAG-----IDAGREQAL 237
Query: 375 -SLLFQR---LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+L+ + LG + R+D V S+ G ++N GM
Sbjct: 238 QALVLEAWRVLGCRGWGRVD---------VMQDSD--------GEFYLLEVNTAPGMTSH 280
Query: 431 SFLFQQASKVGFSHSNILRTII 452
S + A + G S S ++ I+
Sbjct: 281 SLVPMAARQAGMSFSQLVVRIL 302
>gi|417793716|ref|ZP_12440987.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK255]
gi|334272144|gb|EGL90514.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus oralis
SK255]
Length = 347
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 171/403 (42%), Gaps = 75/403 (18%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + D V+ ++I ++ + Q +S TP +
Sbjct: 7 LLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGD---FIKTQEFSQTPGQENR 63
Query: 142 KLESLAQGFG---SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+ + + + S E A +VFP +HG GEDG +Q LE +P+VG
Sbjct: 64 LMTNETIDWNKKVAPSAIYEEGA----VVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNIL 119
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ A DK + G VP +++G +V ++++ V KL + V KP+
Sbjct: 120 SSSLAMDKITTKRVLESVGIAQVPYVSVVEGDDVT-AKIAE--VEEKL---TYPVFTKPS 173
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ + + L++A + + D RV+VE G +
Sbjct: 174 NMGSSVGISKSENQ-EELRQALELAFQ-YDSRVLVE-----------------QGVNAR- 213
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P R V+
Sbjct: 214 ------EIEVGLLGNYDVKSTLPGEVVKDVAFYDYDAKYI-DNKITMDIPARISDDVVAV 266
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ +G +R D ++ T+ G I ++N + G Q
Sbjct: 267 MRQNAETAFRAIGGLGLSRCDFFY-----------------TDKGEIFLNELNTMPGFTQ 309
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHL 472
S +G S+ ++ ++ A S+N +HL
Sbjct: 310 WSMYPLLWDNMGISYPELIERLVDLAKE------SFNKHEAHL 346
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 130/320 (40%), Gaps = 63/320 (19%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L +G+
Sbjct: 83 EEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLES---VGI 139
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
+ + D + I ++ +LT + KP+ G S G+++ E+L
Sbjct: 140 AQVPYVSVVEGDDVTAKIAEVEEKLTYP-----VFTKPSNMGSSVGISKSENQEELR--- 191
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
+ALE L F + D + Q N
Sbjct: 192 QALE---------------------------LAF----QYDSRVLVEQGVNAR------- 213
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
EI VG++G + S +P VK+ + K+ I + P + +S +
Sbjct: 214 ------EIEVGLLGNY-DVKSTLPGEVVKDVA-FYDYDAKYIDNK-ITMDIP--ARISDD 262
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 932
+ +Q E A+ G SR D F D GE+ + E+NT+PG T + ++ L +
Sbjct: 263 VVAVMRQNAETAFRAIGGLGLSRCD-FFYTDKGEIFLNELNTMPGFTQWS--MYPLLWDN 319
Query: 933 PPMYPHQFFRKVLDLGSERF 952
+ + +++DL E F
Sbjct: 320 MGISYPELIERLVDLAKESF 339
>gi|241765424|ref|ZP_04763394.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
gi|241364829|gb|EER59802.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
Length = 337
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 150/395 (37%), Gaps = 77/395 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER +SL S VL ++ R ++A+A PA+
Sbjct: 15 KVAVLMGGASAEREVSLMSGAGVLQALR-----------SRGVDAHAFD--------PAE 55
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D E +GF F +HGR GEDG +Q LE +P+ G G
Sbjct: 56 RDLG-ELRREGFAR--------------CFIALHGRHGEDGTVQGALELLGIPYTGPGVM 100
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A + DK +G T P + L S V E+ L+ ++VKP+R
Sbjct: 101 ASSMSMDKIMTKRIWRAEGLPT-PDWRLVAS-VEET-------VEALETLGAPMIVKPSR 151
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS+IG++ + + K + D V+ E F+E G E T VL G+G PV
Sbjct: 152 EGSTIGLSKVFSPDECAKAYEQA--SRYDPEVLCEQFIE-GDETTCPVLGEGAGAHALPV 208
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+ + + QG+ ++Y+ KY T YH P P I+ F
Sbjct: 209 IRI-----VAPQGN---------YDYQNKYF-TDDTQYHCPSGLPEAQEREIQRLVVQAF 253
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG +AR D F +IN GM S + A
Sbjct: 254 RTLGCRGWARADIMIRACDRKPF----------------LLEINTSPGMTGHSLVPMSAR 297
Query: 439 KVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLP 473
+G S+ ++ ++ A P + + P
Sbjct: 298 ALGISYEDLCVGLLATATLDTPPGVTLSPAQGQAP 332
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 127/297 (42%), Gaps = 75/297 (25%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L +E A FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELRREGFARCFIALHGRHGEDGTVQGALELLGIPYTGPGVMASSMSMDKIMT-------- 111
Query: 689 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 743
K + R E L TP +V E L+ + VKP+R+G + G++++
Sbjct: 112 --------KRIWRAEG-LPTPDWRLVASVEETVEALETLGAPMIVKPSREGSTIGLSKVF 162
Query: 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
++ KA E+ SR PE+L E F+E D
Sbjct: 163 SPDEC---AKAYEQA---------SRYD---------PEVLC-EQFIEGD---------- 190
Query: 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 863
E T V+G+ H+L V G+ + F T +
Sbjct: 191 ---------------ETTCPVLGEGAGAHALPVIRIVAPQGNYDYQNKYFTDDTQYHC-- 233
Query: 864 PPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
P+ + EA ++ QR+ + A L G++R D + + + ++E+NT PGMT
Sbjct: 234 -PSGL--PEAQEREIQRLVVQAFRTLGCRGWARADIMIRACDRKPFLLEINTSPGMT 287
>gi|379755662|ref|YP_005344334.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare
MOTT-02]
gi|378805878|gb|AFC50013.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare
MOTT-02]
Length = 381
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/409 (25%), Positives = 167/409 (40%), Gaps = 71/409 (17%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI---------DRNLNAY 124
GG RV ++ GG S E IS SA S+L ++ + V I D + A
Sbjct: 15 GGERARVAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPEGSWVLTDGDPAAL 74
Query: 125 AISS---AQVYSNTPADFDFKLESLAQG-FGSLSEFAEHLAANVDIVFPTIHGRFGEDGG 180
AI+ +V + + + + G +L A + A+VD+VFP +HG +GEDG
Sbjct: 75 AITDRRLPEVTAESGTELALPADPRRGGQLVALPPGAGEVLASVDVVFPVLHGPYGEDGT 134
Query: 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240
IQ +LE VP+VG G A DK + +G +L+ S
Sbjct: 135 IQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVLRPSRA--------- 185
Query: 241 VTNKLDPNSGK-----VVVKPTRAGSSIGVT--VAYGVIDSLKKAKGIILEGIDDRVVVE 293
+L P + V VKP R GSSIGV+ ++ +D+ A D +V+VE
Sbjct: 186 ---RLRPEECQRLGLPVFVKPARGGSSIGVSRVASWDQLDAAVAAA----RRHDPKVIVE 238
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR----EKDAIFNYRRKYL 349
+ VG +C + + VE G + V +D+ +++ KYL
Sbjct: 239 AAI------------VGRELECGVLEMPDGTVEASALGEIRVAGVRGREDSFYDFATKYL 286
Query: 350 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409
P + + +++R+ A F+ + AR+D +FL
Sbjct: 287 -DDAAELDVPAKVDDEIADTVRQLAIRAFRAIDCQGLARVD-FFL--------------- 329
Query: 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
TE G +L +IN + G S + + G + +L T++ A +R
Sbjct: 330 -TEDGPVL-NEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 376
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 68/157 (43%), Gaps = 38/157 (24%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHL--ADLGVL 693
VF +HG GEDGT+Q LLE GVPY G GV+AS MDK T A L D VL
Sbjct: 121 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVL 180
Query: 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDLT 749
++ R E +C+ L VKPAR G S GV+R+ + L
Sbjct: 181 RPSRARLRPE------------------ECQRLGLPVFVKPARGGSSIGVSRVASWDQLD 222
Query: 750 VYVKALEECLLRIPPNSFSRAH--------GMIEMPN 778
V A R P A G++EMP+
Sbjct: 223 AAVAAAR----RHDPKVIVEAAIVGRELECGVLEMPD 255
>gi|375107696|ref|ZP_09753957.1| D-alanine--D-alanine ligase [Burkholderiales bacterium JOSHI_001]
gi|374668427|gb|EHR73212.1| D-alanine--D-alanine ligase [Burkholderiales bacterium JOSHI_001]
Length = 326
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 124/314 (39%), Gaps = 61/314 (19%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER ISL S VL +Q + ++A+A AQ
Sbjct: 11 KVAVLTGGDSAERAISLMSGGGVLKALQ-----------SQGVDAHAFDPAQ-------- 51
Query: 139 FDFKLESLAQGFGSLSE--FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
QG L E FA VF +HGR GEDG +Q LE +P+ G+G
Sbjct: 52 ---------QGLHLLKEQGFAR--------VFIALHGRHGEDGTVQGALELLGIPYTGSG 94
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
A A DK +G T P F+ + SE V D ++VKP
Sbjct: 95 VMASAIALDKVMTKRVWMAEGLPT-PRFV----RLGPSEQQRERVRGVPDELGLPLIVKP 149
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316
R GSSIGVT G S + + D V+ E F+E G E T VL G+
Sbjct: 150 PREGSSIGVTKVVGY--SQMQDAVLAAAKFDPDVLCEEFIE-GDELTCPVLGDGATARAL 206
Query: 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376
PV V + + ++Y+ KY T V Y P P + ++
Sbjct: 207 PV--------------VKIVAPEGAYDYQNKYF-TDDVRYQCPSGLPPALEAEVQRIVLA 251
Query: 377 LFQRLGLCDFARID 390
++ LG + R D
Sbjct: 252 SYRALGCRGWGRAD 265
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 120/305 (39%), Gaps = 89/305 (29%)
Query: 630 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-------SL 682
L ++ A VFIA+HG GEDGT+Q LE G+PYTG GVMAS +DKV T L
Sbjct: 57 LKEQGFARVFIALHGRHGEDGTVQGALELLGIPYTGSGVMASAIALDKVMTKRVWMAEGL 116
Query: 683 ALNHLADLGVLTINKD-VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
LG ++ VR D L P++ VKP R+G S GV +
Sbjct: 117 PTPRFVRLGPSEQQRERVRGVPDELGLPLI----------------VKPPREGSSIGVTK 160
Query: 742 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 801
+ + V A + F P++L E F+E D
Sbjct: 161 VVGYSQMQDAVLAAAK---------FD------------PDVLC-EEFIEGD-------- 190
Query: 802 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL------MPSVTVKESGDILSLEEKFQG 855
E+T V+G + +L P + + ++Q
Sbjct: 191 -----------------ELTCPVLGDGATARALPVVKIVAPEGAYDYQNKYFTDDVRYQC 233
Query: 856 GTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNT 914
+G+ PP AL+ QRI L + AL G+ R D + + + ++E+NT
Sbjct: 234 PSGL---PP--------ALEAEVQRIVLASYRALGCRGWGRADLMLRARDQQPFLLEMNT 282
Query: 915 VPGMT 919
PGMT
Sbjct: 283 SPGMT 287
>gi|45657718|ref|YP_001804.1| D-alanyl-alanine synthetase A [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|59797586|sp|Q72R93.1|DDL_LEPIC RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|45600958|gb|AAS70441.1| d-alanine-d-alanine ligase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 351
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 146/343 (42%), Gaps = 67/343 (19%)
Query: 616 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 675
+E R+ ++ ++ + F+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 733
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 850
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 911 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 953
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 154/385 (40%), Gaps = 56/385 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-----LNAYAISSAQVYS 133
++ + GG S E IS+ + + + V+ + ++ + Y +S S
Sbjct: 3 KIAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVS 62
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N+P D E + +G +S + + + DI F +HG GEDG IQ LE +P+
Sbjct: 63 NSP---DLFQEEFQKRYG-VSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYT 118
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW--FVTNKLDPNSGK 251
G+G A A DK A+ + G P F E+++ E N V KL+
Sbjct: 119 GSGVLASAIAMDKTRANQIFLQSGQKVAPFF-----EIDKLEYLNSTDAVITKLETLGFP 173
Query: 252 VVVKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+KP GSS+ V Y + + LK+ +I E D +V+ + FL G E + VL+
Sbjct: 174 QFLKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLT-GIEVSCGVLER 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH--TPPRFPIVVI 367
+ L TE + F++ KY +Q H TP R +
Sbjct: 229 YRDGKFKKIALPATE----------IVPGGEFFDFESKY---KQGGSHEITPARISEQEM 275
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
++E A + LG ++R D + H+ + N + GM
Sbjct: 276 KRVQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL------------------ETNTLPGM 317
Query: 428 EQTSFLFQQASKVGFSHSNILRTII 452
+TS + QQA G S + +I
Sbjct: 318 TETSLIPQQAKAAGISMEEVFSDLI 342
>gi|383829578|ref|ZP_09984667.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Saccharomonospora
xinjiangensis XJ-54]
gi|383462231|gb|EID54321.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Saccharomonospora
xinjiangensis XJ-54]
Length = 316
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 144/380 (37%), Gaps = 72/380 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V ++ GG S ER +SL S R + ++ L+VR + D L
Sbjct: 6 VAVLAGGLSHEREVSLRSGRRLSVALRDQGLMVREWDTDAGL------------------ 47
Query: 140 DFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
L+ L Q D +HG GE+G +Q VLE VPFVGT SR
Sbjct: 48 ---LDRLRQ-------------EKPDAAVIALHGGEGENGSVQTVLEMLGVPFVGTSSRG 91
Query: 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTR 258
CR+A+DK A + GF T L S EL V + + G +++KP +
Sbjct: 92 CRKAWDKPIAKALIENAGFATPEWVALPHSTFR--ELGAQPVLDAMVERLGLPLILKPDQ 149
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G V D G G D V+ E F++G A+V G PV
Sbjct: 150 GGSALGAQVVRDAADLPAAMVGCFAYG--DTVLAERFVDGVEVAVAVVERDGGPQALPPV 207
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
++P + +++Y +Y + P R +++RE A
Sbjct: 208 EIVP---------------EGGVYDYTARYT-AGLTDFFAPARLSDDEADAVRELAVRAH 251
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
LGL D +R D E GT+ F ++N G+ +TS +
Sbjct: 252 SLLGLRDISRTDAIV-----------------AEDGTVHFLEVNSSPGLTETSTVPMAFE 294
Query: 439 KVGFSHSNILRTIIGHACSR 458
G S + ++ A R
Sbjct: 295 AAGSSLGEVFADLVQRAVVR 314
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 117/298 (39%), Gaps = 60/298 (20%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNH- 686
+L +E IA+HGG GE+G++Q++LE GVP+ G + DK +A +L N
Sbjct: 50 RLRQEKPDAAVIALHGGEGENGSVQTVLEMLGVPFVGTSSRGCRKAWDKPIAKALIENAG 109
Query: 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746
A + + R +L P++D + +L L +KP + G + G + A
Sbjct: 110 FATPEWVALPHSTFR--ELGAQPVLDA---MVERLGLP-LILKPDQGGSALGAQVVRDAA 163
Query: 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806
DL A+ C A+G + ++ E FV+ E+ + +
Sbjct: 164 DLPA---AMVGCF----------AYG---------DTVLAERFVDGVEVAVAVVERDGGP 201
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
L P V + G + ++ G P
Sbjct: 202 QAL--------------------------PPVEIVPEGGVYDYTARYTAGLTDFFAP--- 232
Query: 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
+ +S + D ++ + L L SR DA V ++G V +EVN+ PG+T ++ +
Sbjct: 233 ARLSDDEADAVRELAVRAHSLLGLRDISRTDAIV-AEDGTVHFLEVNSSPGLTETSTV 289
>gi|347727060|gb|AEP19888.1| D-alanine D-alanine ligase [Exiguobacterium sp. 11-28]
Length = 305
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 150/378 (39%), Gaps = 82/378 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQ--GDDLLVRCYYIDRNLNAYAISSAQVYSNT 135
++V ++ GG S ER +SL S + +++ ++ G +++ ++ DR
Sbjct: 1 MKVAVLYGGVSGEREVSLTSGKGMIEALEERGHEVVAIDFHPDR---------------- 44
Query: 136 PADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
AD E L D+V +HG++GEDG +Q +LE +P+ G+
Sbjct: 45 -AD-------------------ELLTLQADVVVSALHGKYGEDGRVQSLLEMAGLPYTGS 84
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
G A A DK A + + G L++ + +++++ W VVK
Sbjct: 85 GVLASALAMDKARAKIIFAAAGIRIARDVLIETGDDIDAKIAEWGAEF-------PCVVK 137
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
P + GSS G+T+A +D +GI D V+VE +++ G E T VL
Sbjct: 138 PAQEGSSNGLTIA---MDEAMLRQGIDKAFACDTAVLVEQYIK-GRELTVPVLGNHGAET 193
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
PV +++ K+ ++Y KY + + P P + ++ A
Sbjct: 194 ALPV--------------IEIIPKNEFYDYESKYSEGGSI-HVCPAELPDALTEEVQTAA 238
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+ LG ++R D FL S T G + N + GM S
Sbjct: 239 IKAHRALGCSGYSRSD--FLVSET---------------GLAYILETNTLPGMTPLSLFP 281
Query: 435 QQASKVGFSHSNILRTII 452
A VG S+ +L I
Sbjct: 282 DSARAVGISYGELLERFI 299
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 123/290 (42%), Gaps = 69/290 (23%)
Query: 635 QATVFI-AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 693
QA V + A+HG GEDG +QSLLE G+PYTG GV+AS MDK A ++
Sbjct: 52 QADVVVSALHGKYGEDGRVQSLLEMAGLPYTGSGVLASALAMDK----------ARAKII 101
Query: 694 TINKDVRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
+R D+L DI E ++ C VKPA++G S G LT+
Sbjct: 102 FAAAGIRIARDVLIETGDDIDAKIAEWGAEFPC---VVKPAQEGSSNG---------LTI 149
Query: 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810
A++E +LR +A ++ E ++
Sbjct: 150 ---AMDEAMLR---QGIDKAFAC-------DTAVLVEQYI-------------------- 176
Query: 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870
KG E+TV V+G G+ + +P + + + E K+ G I++ P
Sbjct: 177 -KGR----ELTVPVLGNHGA-ETALPVIEIIPKNEFYDYESKYSEGGSIHVCPAELPDAL 230
Query: 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
TE + + AL G+SR D F+ + G I+E NT+PGMTP
Sbjct: 231 TEEVQTAAIKAH---RALGCSGYSRSD-FLVSETGLAYILETNTLPGMTP 276
>gi|332664669|ref|YP_004447457.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100]
gi|332333483|gb|AEE50584.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100]
Length = 329
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 152/384 (39%), Gaps = 66/384 (17%)
Query: 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP 136
+L+V ++ GG AER +SL SA +V H+ +D Y I+ N + N
Sbjct: 1 MLKVAILTGGNVAERSVSLKSAETVRKHL--NDQKYEKYVIELNGTQFTEQGTGTVVNL- 57
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
DF SL G++ D+V+ +HG EDG +Q E +P+ G
Sbjct: 58 NDF-----SLPTPNGNIK---------FDLVYQMLHGHPAEDGCLQGYFEVLGIPYTGCD 103
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
+ F+K + PS +L+ + E NW +L+ V VKP
Sbjct: 104 VMSSAITFNKQACKDFLRSHNIPMAPSKVLR-----KGEAINW---AELEAMGVPVFVKP 155
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFD 314
+ GSS G + +++ + G I DD VVVE FL+ G+EF+ VL
Sbjct: 156 NKNGSSYGAS----KVNTPDQLAGAIEHAFVYDDEVVVEGFLK-GTEFSNGVLRRNG--- 207
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
VV+LP ++ + F+++ KY Q TP R ++
Sbjct: 208 --EVVVLPI---------TEIVPHNEFFDFKAKY--ENQSQEITPARLTPEQTAQVQAQT 254
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
L+++ +G R D + T F + N I GM + S +
Sbjct: 255 KLIYEAVGCRGICRFDYILVGD------------------TFFFLEANTIPGMSEQSIVP 296
Query: 435 QQASKVGFSHSNILRTIIGHACSR 458
QQA G+S + +L + A R
Sbjct: 297 QQARAHGWSITELLDAAVDEALER 320
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 65/291 (22%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V+ +HG EDG LQ E G+PYTG VM+S +K A + L +
Sbjct: 74 VYQMLHGHPAEDGCLQGYFEVLGIPYTGCDVMSSAITFNKQACK---DFLRSHNIPMAPS 130
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
V RK + + W EL + + VKP ++G S G +++ + L
Sbjct: 131 KVLRKGEAIN------WAELEA--MGVPVFVKPNKNGSSYGASKVNTPDQLA-------- 174
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
G IE FV DE++ +G +
Sbjct: 175 --------------GAIE-----------HAFVYDDEVVV--------------EGFLKG 195
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
E + GV+ + G + ++P + + + K++ + +TP + ++ E +
Sbjct: 196 TEFSNGVLRRNGEV-VVLPITEIVPHNEFFDFKAKYENQSQ-EITP---ARLTPEQTAQV 250
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 928
+ + +LI A+ G R D + D +E NT+PGM+ +++ QA
Sbjct: 251 QAQTKLIYEAVGCRGICRFDYILVGDT--FFFLEANTIPGMSEQSIVPQQA 299
>gi|374307417|ref|YP_005053848.1| D-alanine--D-alanine ligase [Filifactor alocis ATCC 35896]
gi|291166569|gb|EFE28615.1| D-alanine--D-alanine ligase [Filifactor alocis ATCC 35896]
Length = 353
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 155/385 (40%), Gaps = 46/385 (11%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ ++ GG S E +S SA+ + +++ D ID+ N Y + + +
Sbjct: 6 IAILFGGKSEEHEVSCRSAKYIFENVDRDKYRPFLIGIDKLGNYYYMKECNIEHLIDCTW 65
Query: 140 DFKLESLAQGFGSLSE-FAEHLAAN---VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195
+E+ F E F L D+VFP +HG GEDG +Q ++E N+P+VG
Sbjct: 66 TDFIETNEVCFSKGDERFTLQLQGEKIVFDVVFPALHGPNGEDGKLQGLMEFVNIPYVGC 125
Query: 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
S + DK + +G VP +L V E +L +++ + VK
Sbjct: 126 NSISSAICMDKEITKRLVGIEGVRQVPYVILYEGVVAEEKLL------EMEEIGYPLFVK 179
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
P GSS+GV+ A + L+ + + DD+V+VE +G + +G G D
Sbjct: 180 PANMGSSVGVSKAENQQELLQAIR--VASKYDDKVIVE---KGIDALELEIAALGDGKDA 234
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
+ F ++ +D ++Y KYL T ++ P +RE A
Sbjct: 235 Y------------FSTVGCIKPRDIFYDYDSKYL-TNDADFYIPAPISFEKETELREMAR 281
Query: 376 LLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+ + LC+ +RID +F+ T I F +IN + G S
Sbjct: 282 KAYTAM-LCEGLSRID-FFMDKETQ---------------EIYFNEINTMPGFTAISLYP 324
Query: 435 QQASKVGFSHSNILRTIIGHACSRF 459
Q G ++ +I +A R+
Sbjct: 325 QLMDYDGVGAKELIGRLIDYAWRRY 349
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 124/319 (38%), Gaps = 68/319 (21%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLT 694
VF A+HG GEDG LQ L+E +PY G ++S CMDK T + + + + +
Sbjct: 96 VVFPALHGPNGEDGKLQGLMEFVNIPYVGCNSISSAICMDKEITKRLVGIEGVRQVPYVI 155
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + V +E LL+ + L VKPA G S GV++ AE+
Sbjct: 156 LYEGVVAEEKLLEMEEIGY-----------PLFVKPANMGSSVGVSK---AEN------- 194
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
E+L + + +K D+++ +
Sbjct: 195 -------------------------------------QQELLQAIRVASKYDDKVIVEKG 217
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL-SLEEKFQGGTGINLTPPPASIMSTEA 873
+E+ + +G + +V + DI + K+ P P S
Sbjct: 218 IDALELEIAALGD--GKDAYFSTVGCIKPRDIFYDYDSKYLTNDADFYIPAPISFEKETE 275
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
L + ++ A+ EG SRID F++ + E+ E+NT+PG T + ++ L +
Sbjct: 276 LREMARK---AYTAMLCEGLSRIDFFMDKETQEIYFNEINTMPGFT--AISLYPQLMDYD 330
Query: 934 PMYPHQFFRKVLDLGSERF 952
+ + +++D R+
Sbjct: 331 GVGAKELIGRLIDYAWRRY 349
>gi|378578695|ref|ZP_09827370.1| D-alanine-D-alanine ligase A [Pantoea stewartii subsp. stewartii
DC283]
gi|377818975|gb|EHU02056.1| D-alanine-D-alanine ligase A [Pantoea stewartii subsp. stewartii
DC283]
Length = 366
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 155/392 (39%), Gaps = 55/392 (14%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
RVG++ GG S+E +SL SA++++D I V ID+ + ++ N
Sbjct: 6 RVGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASSFLLNAENP 65
Query: 139 FDFKLESLAQGFGSLSEFAE---------HLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
L A+ + E H + +D++FP +HG GEDG +Q +L +
Sbjct: 66 SLIALNRTAKQIALIPGEPEQPLIARDDAHSLSQLDVIFPVVHGTQGEDGALQGLLRMAS 125
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
+PFVG+ + DK + G P + S++N+ + L
Sbjct: 126 LPFVGSDVLGSAVSMDKDFTKRLLRDAGLQVAPWLSVTSSQLNQLDTEAVIARFGL---- 181
Query: 250 GKVVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306
+ VKP GSS+G VT A ++ +L+ A D + ++E ++G
Sbjct: 182 -PLFVKPANQGSSVGVSKVTHAAALLPALEMAF-----TFDRKALIEKAIKGRE------ 229
Query: 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
+C VL E + G V V+E ++Y KY+ P P V
Sbjct: 230 ------IEC--AVLGNEEPQASPCGEVVVKE--GFYSYDTKYISETGAQTVIPAAIPPDV 279
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+IR+ A F L AR+D ++ TE G I+ ++N + G
Sbjct: 280 DAAIRQVAIKAFTTLECFGMARVDVFY-----------------TEEGEIVINEVNTLPG 322
Query: 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
S + G S+ +++ +I +R
Sbjct: 323 FTNISMYPKLWQAAGLSYQDLITRLIELTIAR 354
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 110/291 (37%), Gaps = 78/291 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG GEDG LQ LL +P+ G V+ S MDK K
Sbjct: 103 IFPVVHGTQGEDGALQGLLRMASLPFVGSDVLGSAVSMDK----------------DFTK 146
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDLT 749
+ R L P + + ++L + L VKPA G S GV+++ A L
Sbjct: 147 RLLRDAGLQVAPWLSVTSSQLNQLDTEAVIARFGLPLFVKPANQGSSVGVSKVTHAAAL- 205
Query: 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
+ ALE +F R +IE
Sbjct: 206 --LPALEMAF------TFDR-KALIEK--------------------------------- 223
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
KG EI V+G S V VKE S + K+ TG T PA+I
Sbjct: 224 AIKGR----EIECAVLGNEEPQASPCGEVVVKEG--FYSYDTKYISETGAQ-TVIPAAI- 275
Query: 870 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+D +++ + A L+ G +R+D F + GE++I EVNT+PG T
Sbjct: 276 -PPDVDAAIRQVAIKAFTTLECFGMARVDVFYT-EEGEIVINEVNTLPGFT 324
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,915,403,847
Number of Sequences: 23463169
Number of extensions: 634206851
Number of successful extensions: 1526260
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4512
Number of HSP's successfully gapped in prelim test: 610
Number of HSP's that attempted gapping in prelim test: 1496575
Number of HSP's gapped (non-prelim): 20672
length of query: 953
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 801
effective length of database: 8,792,793,679
effective search space: 7043027736879
effective search space used: 7043027736879
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)