BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002207
(953 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P95803|DDL_STRMU D-alanine--D-alanine ligase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=ddl PE=1 SV=2
Length = 349
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 175/396 (44%), Gaps = 68/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D+ LV+ Y+I + A Q + + P++ D
Sbjct: 8 LLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQ---AGDFIKTQEFDSQPSETD- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSF----LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
A DK + + + T+P L++G + ES+L+ V KL V VKP
Sbjct: 124 VAMDKITTNQVL--ESATTIPQVAYVALIEGEPL-ESKLAE--VEEKL---IYPVFVKPA 175
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317
GSS+G++ A D LK+A + L+ D RV++E G D
Sbjct: 176 NMGSSVGISKAENRTD-LKQAIALALK-YDSRVLIE-----------------QGVDAR- 215
Query: 318 VVLLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
E+E+ G+ DV+ KD A ++Y KY+ ++ P V++
Sbjct: 216 ------EIEVGILGNTDVKTTLPGEIVKDVAFYDYEAKYI-DNKITMAIPAEIDPVIVEK 268
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A+ F+ LG C +R D +FL TE G + ++N + G Q
Sbjct: 269 MRDYAATAFRTLGCCGLSRCD-FFL----------------TEDGKVYLNELNTMPGFTQ 311
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G S+S ++ ++ A F S+
Sbjct: 312 WSMYPLLWENMGLSYSVLIEELVSLAKEMFDKRESH 347
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E +A VF +HG +GEDG++Q LE +PY G +++S MDK+ T+ L +
Sbjct: 84 EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQ 143
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+ + + P+ E+ KL + VKPA G S G+++ DL
Sbjct: 144 VAYVALIEGE------PLESKLAEVEEKL-IYPVFVKPANMGSSVGISKAENRTDL 192
>sp|Q3A2G9|DDL_PELCD D-alanine--D-alanine ligase OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=ddl PE=3 SV=1
Length = 305
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 168/384 (43%), Gaps = 93/384 (24%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
++ ++ GG SAER +SL + +++ L RC Y +++A D
Sbjct: 10 KIAVLMGGLSAEREVSLRTGKAI------SQALTRCGYEVTDIDA------------GRD 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
+LE V++ F +HGRFGEDG +Q +LE ++P+ G+G
Sbjct: 52 LAQQLEK----------------TGVEVAFIALHGRFGEDGTVQGLLELADIPYTGSGVL 95
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKP 256
A A DK + G I P F + +G ++ + L ++ +VVKP
Sbjct: 96 ASSLAMDKVATKKMLCYHG-IATPGFAVMRRGQKICGT-LPDY-----------PLVVKP 142
Query: 257 TRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFD 314
R GS+IG+++ + D + A G + E DD V+VE F+ G+E T VL D
Sbjct: 143 AREGSTIGISIVH---DEQELAAG-LEEAFRHDDLVLVEQFI-AGAEVTVGVL------D 191
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
P LP + V K ++Y+ KY P Q Y P P + ++++ A
Sbjct: 192 GQP---LPI---------IQVVPKGGFYDYQSKYTPG-QTEYLLPAPLPETLYGALQDSA 238
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
+F+ +G C AR+D F+ + T + ++N I GM +TS L
Sbjct: 239 VRVFEAIGCCGAARVD--FMVTDTGFYC----------------LEVNTIPGMTETSLLP 280
Query: 435 QQASKVGFSHSNILRTIIGHACSR 458
+ A+ VG S ++ I+ A R
Sbjct: 281 KAANAVGMSFDELVERILAGASLR 304
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 120/296 (40%), Gaps = 71/296 (23%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 688
+L K FIA+HG GEDGT+Q LLE +PYTG GV+AS MDKVAT L +
Sbjct: 55 QLEKTGVEVAFIALHGRFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCY-- 112
Query: 689 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
G+ T V R+ ++ L L VKPAR+G + G++ + ++L
Sbjct: 113 -HGIATPGFAVMRR-----------GQKICGTLPDYPLVVKPAREGSTIGISIVHDEQEL 160
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
LEE ++++ E F+
Sbjct: 161 AA---GLEEAFRH-------------------DDLVLVEQFIA----------------- 181
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
E+TVGV+ +P + V G + K+ G L P P
Sbjct: 182 --------GAEVTVGVLDG-----QPLPIIQVVPKGGFYDYQSKYTPGQTEYLLPAPLPE 228
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924
AL R + A+ G +R+D F+ D G +EVNT+PGMT +++L
Sbjct: 229 TLYGALQDSAVR---VFEAIGCCGAARVD-FMVTDTG-FYCLEVNTIPGMTETSLL 279
>sp|Q5LYJ2|DDL_STRT1 D-alanine--D-alanine ligase OS=Streptococcus thermophilus (strain
CNRZ 1066) GN=ddl PE=3 SV=1
Length = 348
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 167/380 (43%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKRILEVAGVPQVAYTVYIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G S+S+I++ ++
Sbjct: 314 YPLLWENMGLSYSDIIKELV 333
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T L GV
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMTKRILEV---AGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ V + + L+ + + +LT + VKPA G S G+++
Sbjct: 141 PQVAYTVYIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>sp|B9DUS0|DDL_STRU0 D-alanine--D-alanine ligase OS=Streptococcus uberis (strain ATCC
BAA-854 / 0140J) GN=ddl PE=3 SV=1
Length = 348
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 174/386 (45%), Gaps = 49/386 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Y Q ++ P++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFHVKTYFISQAGDFY---KTQEFTVQPSESE- 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + A SL A + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNASLDASLKIKASDIYEDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G+++ + +T L+ S + VKP G
Sbjct: 124 VAMDKITTKRVLESAGIPQVNYTVYIEGNDLEDC------ITETLETLSFPIFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A I+ L++A + L+ D R+++E A ++VG +
Sbjct: 178 SSVGISKAES-IEGLREAIALALK-YDSRILIE------QGVVAREIEVGLLGNTKVAST 229
Query: 321 LPTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379
LP EV KD A ++Y+ KY+ +++ P + + +R A F+
Sbjct: 230 LPGEV-----------IKDVAFYDYQAKYI-DNKISMAIPATIDEGITSQMRYFAEQAFK 277
Query: 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK 439
+G C +R D +FL E G + ++N + G Q S
Sbjct: 278 AIGACGLSRCD-FFL----------------AEDGNLYLNELNTMPGFTQWSMYPLLWDN 320
Query: 440 VGFSHSNILRTIIGHACSRFPNLASY 465
+G S+S+++ ++ A F S+
Sbjct: 321 MGLSYSDLIEELVSLAEEMFQKRESH 346
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E++A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L G+
Sbjct: 84 EDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAMDKITTKRVLE---SAGI 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
+N V + + L+ I + L+ + VKPA G S G+++ E L
Sbjct: 141 PQVNYTVYIEGNDLEDCITETLETLSFP-----IFVKPANMGSSVGISKAESIEGL 191
>sp|Q03JC6|DDL_STRTD D-alanine--D-alanine ligase OS=Streptococcus thermophilus (strain
ATCC BAA-491 / LMD-9) GN=ddl PE=3 SV=1
Length = 348
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 164/379 (43%), Gaps = 61/379 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS 261
A DK + G VP G E E V L+ + V VKP GS
Sbjct: 124 VAMDKIMTKRILEVAG---VPQVAYTG--YIEGEDLEAAVAETLEKLTFPVFVKPANMGS 178
Query: 262 SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321
S+G++ A L+ A + L+ D R+++E +G ++
Sbjct: 179 SVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------VV 212
Query: 322 PTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 373
E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 213 AREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRAY 271
Query: 374 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 272 AAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSMY 314
Query: 434 FQQASKVGFSHSNILRTII 452
+G S+S++++ ++
Sbjct: 315 PLLWENMGLSYSDLIKELV 333
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T L GV
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMTKRILEV---AGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ + + L+ + + +LT + VKPA G S G+++
Sbjct: 141 PQVAYTGYIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>sp|Q5M355|DDL_STRT2 D-alanine--D-alanine ligase OS=Streptococcus thermophilus (strain
ATCC BAA-250 / LMG 18311) GN=ddl PE=3 SV=1
Length = 348
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 167/380 (43%), Gaps = 63/380 (16%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ + + V+ Y+I ++ + Q + TP D D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGD---FIKTQEFIETPGD-DE 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
KL + S + + +VFP +HG GEDG IQ LE +P+VGT +
Sbjct: 64 KLMTNDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260
A DK + G V + ++G ++ + V L+ + V VKP G
Sbjct: 124 VAMDKIMTKRILEVAGVPQVAYTVYIEGEDLEAA------VAETLEKLTFPVFVKPANMG 177
Query: 261 SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVL 320
SS+G++ A L+ A + L+ D R+++E +G +
Sbjct: 178 SSVGISKAENE-SELRSAIDLALK-YDSRILIE---QG---------------------V 211
Query: 321 LPTEVELQFQGSVDVREKD--------AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 372
+ E+E+ G+ V+ D A ++Y+ KY+ ++ P R P+ V+ +R
Sbjct: 212 VAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKYI-DNKITMDIPARVPVEVMTQMRA 270
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A+ F+ LG C AR D +FL TE G I ++N + G Q S
Sbjct: 271 YAAKAFRALGGCGLARCD-FFL----------------TEDGAIYLNELNTMPGFTQWSM 313
Query: 433 LFQQASKVGFSHSNILRTII 452
+G S+S++++ ++
Sbjct: 314 YPLLWENMGLSYSDLIKELV 333
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G V++S MDK+ T L GV
Sbjct: 84 EEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMTKRILEV---AGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741
+ V + + L+ + + +LT + VKPA G S G+++
Sbjct: 141 PQVAYTVYIEGEDLEAAVAETLEKLTFP-----VFVKPANMGSSVGISK 184
>sp|Q0SNW3|DDL_BORAP D-alanine--D-alanine ligase OS=Borrelia afzelii (strain PKo) GN=ddl
PE=3 SV=1
Length = 361
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 168/389 (43%), Gaps = 52/389 (13%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA SV L + + + YID+ + + + P D D
Sbjct: 7 LIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSAYIDKCTGIWYLLDSVSDPPKPIDTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257
+ +KY L + VP F +++ E+ N + V+VKP
Sbjct: 124 SAISSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKR----NVKEVLGYPVIVKPA 179
Query: 258 RAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 180 VLGSSIGINVAY----SENQIESCIEEALKYDLTIVIEKFIEAREIECSIIGNEKMK--- 232
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVINSIRE 372
+ P EV +Q D IF +Y KY +P + ++ P + SI+E
Sbjct: 233 ---IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKE 279
Query: 373 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 432
A L+++ L L AR+D +F+ + GTI +IN I G S
Sbjct: 280 YAFLVYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIPGFTDISM 323
Query: 433 LFQQASKVGFSHSNILRTIIGHACSRFPN 461
+ S G +++ +I +A + N
Sbjct: 324 FSKMCSHDGLQFKDLIDNLIDYAFQSYIN 352
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 107/294 (36%), Gaps = 75/294 (25%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH-----LADLG 691
VF VHG GEDG +Q +L+ +P G G++ S +K L L + +G
Sbjct: 90 VVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAISSNKYFCKLLLKSFNIPIVPFIG 149
Query: 692 VLTINKDVRRKE------DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745
+ + ++E ++L P++ VKPA G S G+ + +
Sbjct: 150 FRQYDYSLDKEEIKRNVKEVLGYPVI----------------VKPAVLGSSIGI-NVAYS 192
Query: 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 805
E+ +E C IE ++ E F+E EI
Sbjct: 193 EN------QIESC---------------IEEALKYDLTIVIEKFIEAREI---------- 221
Query: 806 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 865
+IG M P V + + K+ G ++
Sbjct: 222 ---------------ECSIIGN-EKMKIFSPGEVVVQDFIFYDYDAKYSVIPGNSIIFNI 265
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + T L K+ L+ L+L G +R+D FV +G + + E+NT+PG T
Sbjct: 266 PAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKSGTIYLNEINTIPGFT 319
>sp|A6W7R2|DDL_KINRD D-alanine--D-alanine ligase OS=Kineococcus radiotolerans (strain
ATCC BAA-149 / DSM 14245 / SRS30216) GN=ddl PE=3 SV=1
Length = 376
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 170/405 (41%), Gaps = 66/405 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGD--DLL----------------VRCYYIDRN 120
RV ++ GG S+E IS +A VL + GD D++ R D
Sbjct: 8 RVAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTDGA 67
Query: 121 LNAYAISSAQVYSNTPADFDFK-LESL--AQGFGSLSEFAEHLAANVDIVFPTIHGRFGE 177
L + V P D D K L+ L A G +L+E E VD+V P +HG FGE
Sbjct: 68 LPEVPATGTPV--GLPLDVDTKALQRLGGAPGAPALAELGE-----VDVVLPLLHGPFGE 120
Query: 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP--SFLLQGSEVNESE 235
DG +Q +LE + +VG+G A DK L ++ QG P SF + + +
Sbjct: 121 DGTLQGLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDRDG 180
Query: 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVE 293
V +++ V VKP RAGSSIG+T + S + + E + D +VVVE
Sbjct: 181 -----VVAEVEALGYPVFVKPARAGSSIGIT----RVTSREGLAAAVAEAVSHDPKVVVE 231
Query: 294 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 353
L G ++ D+ G P+ LP EVE+ G D +++ KYL +
Sbjct: 232 AALVGREIECGVLEDLDGG---EPLTSLPGEVEV--VGGHD------FYDFEAKYLDSGN 280
Query: 354 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413
V P P V+ ++R A +F+ +G AR+D + P+
Sbjct: 281 VRLTCPADLPDDVVAAVRRTAVRVFEAMGAEGLARVDLFVDPARGE-------------- 326
Query: 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I+ +IN + G S + + G + ++ +I A R
Sbjct: 327 DGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLIQLALRR 371
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 107/288 (37%), Gaps = 60/288 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGTLQ LLE Y G GV+AS MDK L L L V
Sbjct: 110 VLPLLHGPFGEDGTLQGLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQG-LPVGPWTS 168
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
R+ D + +V L + VKPAR G S G+ R+ E L V
Sbjct: 169 FRARRWDTDRDGVVAEVEALGYP-----VFVKPARAGSSIGITRVTSREGLAAAVA---- 219
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
E + +P V + L
Sbjct: 220 ------------------------EAVSHDPKVVVEAALVGR------------------ 237
Query: 818 VEITVGVIGKCGS---MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI GV+ + SL V V D E K+ + LT P + + + +
Sbjct: 238 -EIECGVLEDLDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCP--ADLPDDVV 294
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGE--VLIIEVNTVPGMTP 920
++ + A+ EG +R+D FV+ GE +++ E+NT+PG TP
Sbjct: 295 AAVRRTAVRVFEAMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTP 342
>sp|A3CLS3|DDL_STRSV D-alanine--D-alanine ligase OS=Streptococcus sanguinis (strain
SK36) GN=ddl PE=3 SV=2
Length = 348
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 164/400 (41%), Gaps = 83/400 (20%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--------LNAYAISSAQ 130
R+ L+ GG SAER +S+ SA SV+ + D V+ Y+I ++ A + +
Sbjct: 5 RLILLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEK 64
Query: 131 VYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
+ +N D K++ S+ E A +VFP +HG GEDG IQ LE +
Sbjct: 65 LMTNATVDMSQKIKP--------SDIYEDGA----VVFPVLHGPMGEDGSIQGFLEVLKM 112
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
P+VG + A DK + G VP L E E ++ + KL +
Sbjct: 113 PYVGCNILSSGLAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---TY 167
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
V KP+ GSS+G++ + E +E A LD+
Sbjct: 168 PVFTKPSNMGSSVGISKS----------------------------ENQAELRA-SLDLA 198
Query: 311 SGFDCHPVV---LLPTEVELQFQGSVDVRE-------KD-AIFNYRRKYLPTQQVAYHTP 359
+D +V + E+E+ G+VDV+ KD A ++Y KY+ ++ P
Sbjct: 199 FKYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYI-DNKITMDIP 257
Query: 360 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 419
+ P V++ +R+ A F+ LG +R D ++ E G +
Sbjct: 258 AKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-----------------AEDGQVFLN 300
Query: 420 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
++N + G Q S +G S+ +++ ++G A F
Sbjct: 301 ELNTMPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAF 340
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 112/290 (38%), Gaps = 67/290 (23%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E+ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T
Sbjct: 84 EDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMDKITT------------ 131
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
K V + + P V L EDL +
Sbjct: 132 ----KRVLESAGIAQVPYV-----------------------------ALVDGEDLEQKI 158
Query: 753 KALEECL---LRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809
+ +EE L + P++ + G+ + N E+ S K R+
Sbjct: 159 QEIEEKLTYPVFTKPSNMGSSVGISKSENQA-------------ELRASLDLAFKYDSRV 205
Query: 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869
+ + EI VG++G + S +P VK+ E K+ I + P + +
Sbjct: 206 LVEQGVTAREIEVGLLGNV-DVKSTLPGEVVKDVA-FYDYEAKYIDNK-ITMDIP--AKI 260
Query: 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
E + +Q E AL G SR D F ++G+V + E+NT+PG T
Sbjct: 261 PEEVVSLMRQNAEAAFRALGGLGLSRCD-FFYAEDGQVFLNELNTMPGFT 309
>sp|O51218|DDL_BORBU D-alanine--D-alanine ligase OS=Borrelia burgdorferi (strain ATCC
35210 / B31 / CIP 102532 / DSM 4680) GN=ddl PE=3 SV=2
Length = 361
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 167/396 (42%), Gaps = 66/396 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP-------SFLLQGSEV--NESELSNWFVTNKLDPNSG 250
+ +KY L + VP + L E+ N E+ +
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGY----------- 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLD 308
V+VKP GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 173 PVIVKPAVLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGN 228
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIV 365
+ P EV +Q D IF +Y KY +P + ++ P
Sbjct: 229 EKMK------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETN 272
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ SI+E A L ++ L L AR+D +F+ + GTI +IN I
Sbjct: 273 QLLSIKEYAFLTYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIP 316
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
G S + S G +++ +I +A + N
Sbjct: 317 GFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 105/295 (35%), Gaps = 77/295 (26%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTI- 695
VF VHG GEDG +Q +L+ +P G G++ S +K L L D+ ++
Sbjct: 90 VVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAISSNKYFCKLLLKSF-DIPLVPFI 148
Query: 696 ----------NKDVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
++++R +++L P++ VKPA G S G+
Sbjct: 149 GFRQHDYFLDKEEIKRNVKEVLGYPVI----------------VKPAVLGSSIGINVAYS 192
Query: 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 804
+ ++K + L I + E F+E EI
Sbjct: 193 ENQIESFIKEALKYDLTI----------------------VIEKFIEAREI--------- 221
Query: 805 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864
+IG M P V + + K+ G ++
Sbjct: 222 ----------------ECSIIGN-EKMKIFSPGEVVVQDFIFYDYDAKYSVIPGNSIIFN 264
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + T L K+ L L+L G +R+D FV +G + + E+NT+PG T
Sbjct: 265 IPAHLETNQLLSIKEYAFLTYKNLELRGMARVDFFVEKKSGTIYLNEINTIPGFT 319
>sp|Q3ACF5|DDL_CARHZ D-alanine--D-alanine ligase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=ddl PE=3 SV=1
Length = 312
Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 159/378 (42%), Gaps = 78/378 (20%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+++G+ICGG S+ER +SL + ++ + V +DRN+
Sbjct: 1 MKIGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKIDMDRNIA--------------- 45
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
E+L + N+D F +HG++GEDG IQ +LE ++P+ G+G
Sbjct: 46 ------ETLKK-------------ENIDFAFIALHGKYGEDGAIQGLLEIMDIPYTGSGI 86
Query: 198 RACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN---ESELSNWFVTNKLDPNSGKVVV 254
A A DK + +G I P+++ + N E+ S T KL VV+
Sbjct: 87 LASSLAIDKIMTKKILKAEG-IPTPNYIAFSFDENPNFEAISSEILQTLKL-----PVVI 140
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
K R GS+IG+ + L KA +LE ID +++VE F+E G E TA VL +
Sbjct: 141 KAPREGSTIGIEFVFSK-QELPKAIKKVLE-IDKQLLVEEFIE-GVEVTASVLG-----N 192
Query: 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGA 374
+PVV LP +++ K ++Y KY P + PPR + E A
Sbjct: 193 SNPVV-LPL---------IEIVSKTRFYDYEAKYTPGLS-EHIIPPRIAPELSQKAIEYA 241
Query: 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 434
++ LG FAR+D + ++N I GM TS
Sbjct: 242 RKTYKALGCRGFARVDFMIDVRKNEAY----------------VLEVNTIPGMTATSLFP 285
Query: 435 QQASKVGFSHSNILRTII 452
A G S +++ I+
Sbjct: 286 DAAKAQGISFEDLVEKIL 303
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 67/342 (19%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
G+++ ++ M +I E +K KEN FIA+HG GEDG +Q LLE +PYTG G++A
Sbjct: 32 GYNVV-KIDMDRNIAETLK--KENIDFAFIALHGKYGEDGAIQGLLEIMDIPYTGSGILA 88
Query: 671 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVK 729
S +DK+ T L G+ T N ++ P + I E+ L+ + +K
Sbjct: 89 SSLAIDKIMTKKILKA---EGIPTPNYIAFSFDE---NPNFEAISSEILQTLKL-PVVIK 141
Query: 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789
R+G + G+ + ++L +K + E + L+ E F
Sbjct: 142 APREGSTIGIEFVFSKQELPKAIKKVLEI----------------------DKQLLVEEF 179
Query: 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 849
+E VE+T V+G + ++P + +
Sbjct: 180 IE-------------------------GVEVTASVLGNSNPV--VLPLIEIVSKTRFYDY 212
Query: 850 EEKFQGGTGINLTPPP-ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
E K+ G ++ PP A +S +A++ ++ + AL GF+R+D ++V E
Sbjct: 213 EAKYTPGLSEHIIPPRIAPELSQKAIEYARKTYK----ALGCRGFARVDFMIDVRKNEAY 268
Query: 909 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950
++EVNT+PGMT +T L A Q + K+L LG E
Sbjct: 269 VLEVNTIPGMT-ATSLFPDAAKAQGISF-EDLVEKILMLGLE 308
>sp|B7J1D2|DDL_BORBZ D-alanine--D-alanine ligase OS=Borrelia burgdorferi (strain ZS7)
GN=ddl PE=3 SV=1
Length = 361
Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 167/396 (42%), Gaps = 66/396 (16%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + P + D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66
Query: 141 -FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRA 199
+ SL GFG F+ + +D+VFP +HGR GEDG IQ VL+ ++P VG G
Sbjct: 67 VLPIVSLLPGFGI---FSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIG 123
Query: 200 CRQAFDKYDASLEMSKQGFITVP-------SFLLQGSEV--NESELSNWFVTNKLDPNSG 250
+ +KY L + VP + L E+ N E+ +
Sbjct: 124 SAISSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKKNVKEVLGY----------- 172
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLD 308
V+VKP GSSIG+ VAY S + + I E + D +V+E F+E +I+ +
Sbjct: 173 PVIVKPAVLGSSIGINVAY----SENQIESFIKEALKYDLTIVIEKFIEAREIECSIIGN 228
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIV 365
+ P EV +Q D IF +Y KY +P + ++ P
Sbjct: 229 EKMK------IFSPGEVVVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAHLETN 272
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+ SI+E A L ++ L L AR+D +F+ + GTI +IN I
Sbjct: 273 QLLSIKEYAFLAYKNLELRGMARVD-FFVEKKS---------------GTIYLNEINTIP 316
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
G S + S G +++ +I +A + N
Sbjct: 317 GFTDISMFAKMCSNDGLQFKDLVDNLIDYAFQSYIN 352
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 102/297 (34%), Gaps = 81/297 (27%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL------------ 684
VF VHG GEDG +Q +L+ +P G G++ S +K L L
Sbjct: 90 VVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAISSNKYFCKLLLKSFDIPLVPFIG 149
Query: 685 --NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
H L I K+V+ ++L P++ VKPA G S G+
Sbjct: 150 FRQHDYFLDKEEIKKNVK---EVLGYPVI----------------VKPAVLGSSIGINVA 190
Query: 743 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 802
+ ++K + L I + E F+E EI
Sbjct: 191 YSENQIESFIKEALKYDLTI----------------------VIEKFIEAREI------- 221
Query: 803 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862
+IG M P V + + K+ G ++
Sbjct: 222 ------------------ECSIIGN-EKMKIFSPGEVVVQDFIFYDYDAKYSVIPGNSII 262
Query: 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + T L K+ L L+L G +R+D FV +G + + E+NT+PG T
Sbjct: 263 FNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKSGTIYLNEINTIPGFT 319
>sp|A8AY66|DDL_STRGC D-alanine--D-alanine ligase OS=Streptococcus gordonii (strain
Challis / ATCC 35105 / CH1 / DL1 / V288) GN=ddl PE=3
SV=1
Length = 348
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 165/379 (43%), Gaps = 47/379 (12%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF 141
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + Q +S+ PA+ D
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGD---FIKTQEFSSKPAE-DV 63
Query: 142 KLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201
+L + S + +VFP +HG GEDG IQ LE +P+VG +
Sbjct: 64 RLMTNDTVDMSRKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSS 123
Query: 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS 261
A DK + G VP L E E ++ + KL S V KP+ GS
Sbjct: 124 LAMDKITTKRVLESAGIAQVPYVALVDGEDLEQKIQE--IEEKL---SYPVFTKPSNMGS 178
Query: 262 SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321
S+G++ + + L+ + + + D RV+VE TA ++VG + L
Sbjct: 179 SVGISKSDNQ-EELRASLDLAFK-YDSRVLVE------QGVTAREIEVGLLGNADVKSSL 230
Query: 322 PTEVELQFQGSVDVREKD-AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380
P EV KD A ++Y+ KY+ ++ P + P V+N++R+ A + F+
Sbjct: 231 PGEV-----------VKDVAFYDYQAKYI-DNKITMAIPAQLPEGVVNTMRQNAEIAFRA 278
Query: 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440
+G +R D ++ TE G + ++N + G Q S +
Sbjct: 279 IGGLGLSRCDFFY-----------------TEDGQVFLNELNTMPGFTQWSMYPLLWENM 321
Query: 441 GFSHSNILRTIIGHACSRF 459
G ++ +++ ++ A F
Sbjct: 322 GLAYPDLIEKLVALAEEAF 340
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 113/294 (38%), Gaps = 75/294 (25%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
E A VF +HG +GEDG++Q LE +PY G +++S MDK+ T L V
Sbjct: 84 EEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMDKITTKRVLESAGIAQV 143
Query: 693 ----LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748
L +D+ +K E+ KL KP+ G S G+++ E+L
Sbjct: 144 PYVALVDGEDLEQK-----------IQEIEEKLSYPVFT-KPSNMGSSVGISKSDNQEEL 191
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
+ ++ F S R
Sbjct: 192 RASL-----------------------------------------DLAFKYDS------R 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---P 865
++ + EI VG++G + S +P VK+ + K+ I + P P
Sbjct: 205 VLVEQGVTAREIEVGLLGNA-DVKSSLPGEVVKDVA-FYDYQAKYIDNK-ITMAIPAQLP 261
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+++T +Q E+ A+ G SR D F ++G+V + E+NT+PG T
Sbjct: 262 EGVVNT-----MRQNAEIAFRAIGGLGLSRCD-FFYTEDGQVFLNELNTMPGFT 309
>sp|A7HNE8|DDL_FERNB D-alanine--D-alanine ligase OS=Fervidobacterium nodosum (strain
ATCC 35602 / DSM 5306 / Rt17-B1) GN=ddl PE=3 SV=1
Length = 316
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 155/392 (39%), Gaps = 86/392 (21%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+ +G++ GG S ER IS+ S + + + RN+ + + V N
Sbjct: 1 MYLGVLLGGISREREISIRSGKRIAQAL-------------RNM-GHVVDEIDVDDN--- 43
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGS 197
F +KL L + D +F +HG FGEDG +Q +L+ +P+ G+G
Sbjct: 44 -FIYKLSELKK---------------YDALFNILHGTFGEDGKMQAILDSIGIPYTGSGV 87
Query: 198 RACRQAFDKYDASL-------EMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG 250
AFDKY +L + + +P+FLL SE E E + + K+
Sbjct: 88 ETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFLLISSEEFE-ESKIYMIEEKI---GL 143
Query: 251 KVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307
VVKP + GSSIG + + ++D+LK + D+ +V E G E T V+
Sbjct: 144 PCVVKPRKEGSSIGTHICFSKEELLDALKNE----FKNYDEMIVQEYI--KGKEITVSVI 197
Query: 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 367
D+ P+ +++R K ++Y KY + P
Sbjct: 198 DINGTPTVLPI--------------LELRPKKLFYDYEAKY-TDGMTEFIIPAELDGETT 242
Query: 368 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427
I +++ LG F+RIDG + G F ++N + GM
Sbjct: 243 EKINHAVLKIYKSLGCKHFSRIDGI------------------VKDGVFYFLEVNTLPGM 284
Query: 428 EQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
+ S L A+ G S ++ II AC +
Sbjct: 285 TELSDLPMSANAFGISFDELVDLIIKEACRKL 316
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 122/287 (42%), Gaps = 63/287 (21%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL----ALNHLADLGVL 693
+F +HG GEDG +Q++L++ G+PYTG GV S DK +L + +L V+
Sbjct: 57 LFNILHGTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVV 116
Query: 694 TI-NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752
I N + E+ ++ I I ++ L C VKP ++G S G +C
Sbjct: 117 KIPNFLLISSEEFEESKIYMIEEKIG--LPC---VVKPRKEGSSIG-THIC--------- 161
Query: 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812
FS+ +E+L + ++ KN D ++ +
Sbjct: 162 --------------FSK-----------------------EELLDALKNEFKNYDEMIVQ 184
Query: 813 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872
+ EITV VI G+ +++P + ++ E K+ G + P + E
Sbjct: 185 EYIKGKEITVSVIDINGT-PTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAE---LDGE 240
Query: 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+K + I +L + FSRID V +G +EVNT+PGMT
Sbjct: 241 TTEKINHAVLKIYKSLGCKHFSRIDGIVK--DGVFYFLEVNTLPGMT 285
>sp|Q8E0G6|DDL_STRA5 D-alanine--D-alanine ligase OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=ddl PE=3 SV=1
Length = 348
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 174/396 (43%), Gaps = 69/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + S ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D D + S+ + A IVFP +HG GEDG IQ LE +P+V
Sbjct: 68 NQTVDLDKMVRP--------SDIYDDNA----IVFPVLHGPMGEDGSIQGFLEVLRMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ----GSEVNESELSNWFVTNKLDPNS 249
GT + A DK ++ G VP Q G ++ + + L+ S
Sbjct: 116 GTNILSSSVAMDKITTKQVLATVG---VPQVAYQTYFEGDDLEHA------IKLSLETLS 166
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ VKP GSS+G++ A SL+ A + L+ D R+++E +G TA ++V
Sbjct: 167 FPIFVKPANMGSSVGISKATDE-SSLRSAIDLALK-YDSRILIE---QG---VTAREIEV 218
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +L +V+ F G V V++ D ++Y KY+ ++ P + + +
Sbjct: 219 G--------ILGNNDVKTTFPGEV-VKDVD-FYDYDAKYI-DNKITMDIPAKVDEATMEA 267
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ AS F+ +G C +R D +FL T+ G I ++N + G Q
Sbjct: 268 MRQYASKAFKAIGACGLSRCD-FFL----------------TKDGQIFLNELNTMPGFTQ 310
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G ++S+++ ++ A F S+
Sbjct: 311 WSMYPLLWENMGLTYSDLIEKLVMLAKEMFEKRESH 346
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 127/324 (39%), Gaps = 78/324 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
++ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA +GV
Sbjct: 84 DDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTK---QVLATVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDL 748
+ + D D+ H + KL +TL VKPA G S G++
Sbjct: 141 PQVAYQTYFEGD-------DLEHAI--KLSLETLSFPIFVKPANMGSSVGIS-------- 183
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
KA +E LR I++ K R
Sbjct: 184 ----KATDESSLR----------SAIDL-------------------------ALKYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G + + P VK+ D + K+ P
Sbjct: 205 ILIEQGVTAREIEVGILGN-NDVKTTFPGEVVKDV-DFYDYDAKYIDNKITMDIPAKVDE 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV----- 923
+ EA+ +Q A+ G SR D F+ D G++ + E+NT+PG T ++
Sbjct: 263 ATMEAM---RQYASKAFKAIGACGLSRCDFFLTKD-GQIFLNELNTMPGFTQWSMYPLLW 318
Query: 924 ----LIHQALSEQPPMYPHQFFRK 943
L + L E+ M + F K
Sbjct: 319 ENMGLTYSDLIEKLVMLAKEMFEK 342
>sp|Q8E640|DDL_STRA3 D-alanine--D-alanine ligase OS=Streptococcus agalactiae serotype
III (strain NEM316) GN=ddl PE=3 SV=1
Length = 348
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 174/396 (43%), Gaps = 69/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + S ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D D + S+ + A IVFP +HG GEDG IQ LE +P+V
Sbjct: 68 NQTVDLDKMVRP--------SDIYDDNA----IVFPVLHGPMGEDGSIQGFLEVLRMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ----GSEVNESELSNWFVTNKLDPNS 249
GT + A DK ++ G VP Q G ++ + + L+ S
Sbjct: 116 GTNILSSSVAMDKITTKQVLATVG---VPQVAYQTYFEGDDLEHA------IKLSLETLS 166
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ VKP GSS+G++ A SL+ A + L+ D R+++E +G TA ++V
Sbjct: 167 FPIFVKPANMGSSVGISKATDE-SSLRSAIDLALK-YDSRILIE---QG---VTAREIEV 218
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +L +V+ F G V V++ D ++Y KY+ ++ P + + +
Sbjct: 219 G--------ILGNNDVKTTFPGEV-VKDVD-FYDYDAKYI-DNKITMDIPAKVDEATMEA 267
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ AS F+ +G C +R D +FL T+ G I ++N + G Q
Sbjct: 268 MRQYASKAFKAIGACGLSRCD-FFL----------------TKDGQIFLNELNTMPGFTQ 310
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G ++S+++ ++ A F S+
Sbjct: 311 WSMYPLLWENMGLTYSDLIEKLVMLAKEMFEKRESH 346
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 127/324 (39%), Gaps = 78/324 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
++ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA +GV
Sbjct: 84 DDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTK---QVLATVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDL 748
+ + D D+ H + KL +TL VKPA G S G++
Sbjct: 141 PQVAYQTYFEGD-------DLEHAI--KLSLETLSFPIFVKPANMGSSVGIS-------- 183
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
KA +E LR I++ K R
Sbjct: 184 ----KATDESSLR----------SAIDL-------------------------ALKYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G + + P VK+ D + K+ P
Sbjct: 205 ILIEQGVTAREIEVGILGN-NDVKTTFPGEVVKDV-DFYDYDAKYIDNKITMDIPAKVDE 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV----- 923
+ EA+ +Q A+ G SR D F+ D G++ + E+NT+PG T ++
Sbjct: 263 ATMEAM---RQYASKAFKAIGACGLSRCDFFLTKD-GQIFLNELNTMPGFTQWSMYPLLW 318
Query: 924 ----LIHQALSEQPPMYPHQFFRK 943
L + L E+ M + F K
Sbjct: 319 ENMGLTYSDLIEKLVMLAKEMFEK 342
>sp|Q3K1T9|DDL_STRA1 D-alanine--D-alanine ligase OS=Streptococcus agalactiae serotype Ia
(strain ATCC 27591 / A909 / CDC SS700) GN=ddl PE=3 SV=1
Length = 348
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 174/396 (43%), Gaps = 69/396 (17%)
Query: 82 LICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--------NLNAYAISSAQVYS 133
L+ GG SAER +S+ SA SV+ I D V+ Y+I + + S ++ +
Sbjct: 8 LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQVGQFIKTQEFDEMPSSDEKLMT 67
Query: 134 NTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV 193
N D D + S+ + A IVFP +HG GEDG IQ LE +P+V
Sbjct: 68 NQTVDLDKMVRP--------SDIYDDNA----IVFPVLHGPMGEDGSIQGFLEVLRMPYV 115
Query: 194 GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ----GSEVNESELSNWFVTNKLDPNS 249
GT + A DK ++ G VP Q G ++ + + L+ S
Sbjct: 116 GTNILSSSVAMDKITTKQVLATVG---VPQVAYQTYFEGDDLEHA------IKLSLETLS 166
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
+ VKP GSS+G++ A SL+ A + L+ D R+++E +G TA ++V
Sbjct: 167 FPIFVKPANMGSSVGISKATDE-SSLRSAIDLALK-YDSRILIE---QG---VTAREIEV 218
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G +L +V+ F G V V++ D ++Y KY+ ++ P + + +
Sbjct: 219 G--------ILGNNDVKTTFPGEV-VKDVD-FYDYDAKYI-DNKITMDIPAKVDEATMEA 267
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ AS F+ +G C +R D +FL T+ G I ++N + G Q
Sbjct: 268 MRQYASKAFKAIGACGLSRCD-FFL----------------TKDGQIFLNELNTMPGFTQ 310
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY 465
S +G ++S+++ ++ A F S+
Sbjct: 311 WSMYPLLWENMGLTYSDLIEKLVMLAKEMFEKRESH 346
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 127/324 (39%), Gaps = 78/324 (24%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 692
++ A VF +HG +GEDG++Q LE +PY G +++S MDK+ T LA +GV
Sbjct: 84 DDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMDKITTK---QVLATVGV 140
Query: 693 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDL 748
+ + D D+ H + KL +TL VKPA G S G++
Sbjct: 141 PQVAYQTYFEGD-------DLEHAI--KLSLETLSFPIFVKPANMGSSVGIS-------- 183
Query: 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808
KA +E LR I++ K R
Sbjct: 184 ----KATDESSLR----------SAIDL-------------------------ALKYDSR 204
Query: 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868
++ + EI VG++G + + P VK+ D + K+ P
Sbjct: 205 ILIEQGVTAREIEVGILGN-NDVKTTFPGEVVKDV-DFYDYDAKYIDNKITMDIPAKVDE 262
Query: 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV----- 923
+ EA+ +Q A+ G SR D F+ D G++ + E+NT+PG T ++
Sbjct: 263 ATMEAM---RQYASKAFKAIGACGLSRCDFFLTKD-GQIFLNELNTMPGFTQWSMYPLLW 318
Query: 924 ----LIHQALSEQPPMYPHQFFRK 943
L + L E+ M + F K
Sbjct: 319 ENMGLTYSDLIEKLVMLAKEMFEK 342
>sp|Q046V3|DDL_LACGA D-alanine--D-alanine ligase OS=Lactobacillus gasseri (strain ATCC
33323 / DSM 20243) GN=ddl PE=3 SV=2
Length = 361
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 166/390 (42%), Gaps = 52/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSNTP 136
++VGLI GG S+E +S+ SA ++ + I + V +I + A S +V N
Sbjct: 5 IKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNP- 63
Query: 137 ADFDFKLE-SLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
K+E + ++S E +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 64 -----KMEVANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGK 251
A DK + + G ++ E N+ ++L +V ++L
Sbjct: 119 DDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQL---GSD 175
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
+ VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 176 LFVKPSNQGSSVGVS----HVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL--- 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ + KD+ + Y KY P + P ++
Sbjct: 229 --GND-KPIVAGVGQI---------INAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEK 276
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A +FQ ARID TE ++ T++N + G
Sbjct: 277 VRKNALKVFQATECSGLARIDSML----------------RTEDKEVVLTEVNALPGFTN 320
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + +VG +++++ +I +A R+
Sbjct: 321 ISMYPKLFEEVGIPYTDLITKLIDYAMERY 350
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 102/461 (22%), Positives = 172/461 (37%), Gaps = 117/461 (25%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+V +IFGG++SE +VS+MS N++ + N +V P + + G AN D+
Sbjct: 6 KVGLIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWI-----TNDGYLAN----DAD 55
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR V P +E P + A S++
Sbjct: 56 SRKVLDNP---------------KMEVANPHKVANISNIV-------------------- 80
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
EL R I+ F VHG +GEDG LQ L P+ G V+A+
Sbjct: 81 ----ELKDRPEID-----------VFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAA 125
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPA 731
MDK T + LA + + K + K P + + +E + L VKP+
Sbjct: 126 VTMDKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPS 181
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV+ + ++ V AL E F
Sbjct: 182 NQGSSVGVSHVTNEKEYKV---ALAEA------------------------------FKY 208
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
D++L + + GN + + VG I + K+S + E
Sbjct: 209 DDKVLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYEN 253
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ + L P + + ++K ++ + A + G +RID+ + ++ EV++ E
Sbjct: 254 KYDDNSTSTLEIP--AKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEDKEVVLTE 311
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
VN +PG T + ++ L E+ + K++D ER+
Sbjct: 312 VNALPGFT--NISMYPKLFEEVGIPYTDLITKLIDYAMERY 350
>sp|Q6MQ94|DDL_BDEBA D-alanine--D-alanine ligase OS=Bdellovibrio bacteriovorus (strain
ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=ddl PE=3
SV=1
Length = 365
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 156/398 (39%), Gaps = 69/398 (17%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
V LI GG SAE +SL SA++V D + D I + + Y V++
Sbjct: 7 VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEATKIV 66
Query: 140 DFKLESLA--------QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
D L S A QG L +H VD+ FP +HG GEDG IQ + + +P
Sbjct: 67 DSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKMVQLP 126
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQ--GFITVPS--FLL----QGSEVNE--SELSNWFV 241
FVG G + DK E+ K+ +P+ +LL Q ++ NE EL + F
Sbjct: 127 FVGCGVWSSAAGMDK-----EIMKRLLAVAKIPNARYLLLTPHQKNDYNEIVKELGSPF- 180
Query: 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE 301
+KP AGSS+GV D + K K D +V+ E F++G
Sbjct: 181 -----------FIKPANAGSSVGVHKIKTAEDFVVKLKDAF--QFDTKVLAEEFIQGREV 227
Query: 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
+++ G + P LP EV Q + ++Y KY+ P
Sbjct: 228 ECSVM-----GHNHAPKASLPGEVIPQHE----------FYSYEAKYIDDNGALLKIPAE 272
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
++++ A +Q +G R+D + P+ G + +I
Sbjct: 273 LSPETTKAVQKMAEQTYQAMGCDGLTRVDFFIRPN-----------------GELYINEI 315
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
N I G + S + G S+ +++ +I +F
Sbjct: 316 NTIPGFTKISMYPKMWEASGLSYKDLISQLIQLGFEKF 353
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 182/461 (39%), Gaps = 116/461 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 553
V +IFGG ++E +VSL S NV A + + TP L+ S + S
Sbjct: 7 VALIFGGKSAEHEVSLRSAKNV---ADALDKDKFTPVLIGISKEGS-------------- 49
Query: 554 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 613
+ P V T+ V +A EP A S L+ + V + LK HS T D
Sbjct: 50 --WYRFPDMGVFTEATKIVDSALPSKAEP--VALMS-LQGKPV---LYSLKDHSK-TAVD 100
Query: 614 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 673
+A F +HG +GEDGT+Q L + +P+ G GV +S
Sbjct: 101 VA-----------------------FPILHGTMGEDGTIQGLFKMVQLPFVGCGVWSSAA 137
Query: 674 CMDK--VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731
MDK + LA+ + + L + +K D ++E+ +L +KPA
Sbjct: 138 GMDKEIMKRLLAVAKIPNARYLLLTP--HQKND---------YNEIVKELGS-PFFIKPA 185
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV ++ AED V +K ++F F+ V
Sbjct: 186 NAGSSVGVHKIKTAEDFVVKLK-----------DAFQ-----------------FDTKVL 217
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
+E + + E+ V+G + + +P + + + S E
Sbjct: 218 AEEFI-------------------QGREVECSVMGHNHAPKASLPGEVIPQH-EFYSYEA 257
Query: 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911
K+ G L P + +S E ++ E A+ +G +R+D F+ NGE+ I E
Sbjct: 258 KYIDDNGALLKIP--AELSPETTKAVQKMAEQTYQAMGCDGLTRVDFFIR-PNGELYINE 314
Query: 912 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+NT+PG T + ++ + E + +++ LG E+F
Sbjct: 315 INTIPGFT--KISMYPKMWEASGLSYKDLISQLIQLGFEKF 353
>sp|Q7NV72|DDLA_CHRVO D-alanine--D-alanine ligase A OS=Chromobacterium violaceum (strain
ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB
9131 / NCTC 9757) GN=ddlA PE=3 SV=1
Length = 366
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 150/384 (39%), Gaps = 49/384 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
+RVGLI GG S+E +SL SAR++L I G+ V +D+ +A ++ N
Sbjct: 4 IRVGLIFGGQSSEHEVSLQSARNILQAIDGERFEVSLIGVDKQGRWHASQASNFLLNADD 63
Query: 138 DFDFKL----ESLA----QGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
L E+LA + G L A H A +D+ FP +HG GEDG +Q +L
Sbjct: 64 PGRIALRESGENLALVPGECSGQLQTAANAHPLAQIDVAFPIVHGTLGEDGSLQGLLRMA 123
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
N+PFVG G DK A + G P L S+ ++LS L
Sbjct: 124 NIPFVGAGVLGSAVCMDKDVAKRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGL--- 180
Query: 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308
+ VKP GSS+GV+ D L+ A D +V+VE +
Sbjct: 181 --PLFVKPANQGSSVGVSKVKREAD-LRAALDEAFR-YDHKVLVEQAV------------ 224
Query: 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 368
+G +C +L E + G ++ D + Y KYL P P
Sbjct: 225 IGREIEC---AVLGNE-RPRASGCGEIVLSDEFYAYDTKYLNEDGARVAVPADIPDEACQ 280
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
IR A FQ L AR+D + P G ++ ++N + G
Sbjct: 281 RIRGIAIEAFQALECSGMARVDVFLTPD-----------------GEVVINELNTLPGFT 323
Query: 429 QTSFLFQQASKVGFSHSNILRTII 452
S + G S+ ++ +I
Sbjct: 324 NISMYPKLWQAAGMSYRELITALI 347
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 24/120 (20%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
F VHG +GEDG+LQ LL +P+ G GV+ S CMDK +
Sbjct: 101 VAFPIVHGTLGEDGSLQGLLRMANIPFVGAGVLGSAVCMDK----------------DVA 144
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDL 748
K + R L P V + + L VKPA G S GV+++ DL
Sbjct: 145 KRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGLPLFVKPANQGSSVGVSKVKREADL 204
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 875 DKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 930
D+ QRI IA AL+ G +R+D F+ D GEV+I E+NT+PG T + ++ L
Sbjct: 276 DEACQRIRGIAIEAFQALECSGMARVDVFLTPD-GEVVINELNTLPGFT--NISMYPKLW 332
Query: 931 EQPPMYPHQFFRKVLDLGSER 951
+ M + +++L E+
Sbjct: 333 QAAGMSYRELITALIELALEK 353
>sp|B7GU04|DDL_BIFLS D-alanine--D-alanine ligase OS=Bifidobacterium longum subsp.
infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 /
NCTC 11817 / S12) GN=ddl PE=3 SV=1
Length = 395
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 135/326 (41%), Gaps = 48/326 (14%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+ + H A +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 INSADSGFGTSFVSMPDPEMHHALTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG---K 251
G A DK+ + + G T P G V+ + V K++ ++G
Sbjct: 157 CGVFASAACMDKHYTKVVLGAAGIPTAP-----GVTVDARNFTAADVLAKIE-DAGLTYP 210
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311
+ +KP+RAGSS GVT K K E DR+ + G ++ +V
Sbjct: 211 LFIKPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGID 261
Query: 312 GFDCHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 366
G + VL P E E + G + D + D +++ KY+ P P+ V
Sbjct: 262 GREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSV 321
Query: 367 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426
+ +R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 322 LEDVRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPG 364
Query: 427 MEQTSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 365 FTPISMYPKAWDATGVSYTELITRLI 390
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ ++ L +KP+R G S GV ++ A+D
Sbjct: 189 DARNFT------AADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADD 232
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
A+ G SR+D FV D G V++ E+NT+PG TP
Sbjct: 334 KAVDGAGLSRVDTFVTPD-GTVMVNEINTMPGFTP 367
>sp|Q8G7C4|DDL_BIFLO D-alanine--D-alanine ligase OS=Bifidobacterium longum (strain NCC
2705) GN=ddl PE=3 SV=1
Length = 428
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 130/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 130 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 189
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 190 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 246
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 247 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGRE 297
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 298 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 357
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 358 VRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 400
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 401 ISMYPKAWDATGVSYTELITRLI 423
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 162 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 221
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 222 DAR------NFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 265
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
A+ G SR+D FV D G V++ E+NT+PG TP
Sbjct: 367 KAVDGAGLSRVDTFVTPD-GTVMVNEINTMPGFTP 400
>sp|B3DTT9|DDL_BIFLD D-alanine--D-alanine ligase OS=Bifidobacterium longum (strain
DJO10A) GN=ddl PE=3 SV=1
Length = 395
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 130/323 (40%), Gaps = 42/323 (13%)
Query: 143 LESLAQGFG----SLSEFAEHLA----ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
+ S GFG S+S+ H +VD V P +HG +GEDG +Q +LE VP+VG
Sbjct: 97 INSADSGFGTSFVSMSDPEMHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVG 156
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254
G A DK+ + + G T P + +++ L + + V
Sbjct: 157 CGVFASAACMDKHYTKVVLDAAGIPTAPGVTVDARNFTAADVLAEIEDAGL---TYPLFV 213
Query: 255 KPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314
KP+RAGSS GVT K K E DR+ + G ++ +V G +
Sbjct: 214 KPSRAGSSFGVT---------KVEKADDRETQQDRLAAAIATAGEHDWKVLVEQGIDGRE 264
Query: 315 CHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 265 IECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLED 324
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 325 VRDVARRAFKAVDGVGLSRVDTFVTPD-----------------GTVMVNEINTMPGFTP 367
Query: 430 TSFLFQQASKVGFSHSNILRTII 452
S + G S++ ++ +I
Sbjct: 368 ISMYPKAWDATGVSYTELITRLI 390
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + L+ +
Sbjct: 129 VLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGVTV 188
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D R D+ E+ L VKP+R G S GV ++ A+D
Sbjct: 189 DAR------NFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADD 232
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 892 GFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920
G SR+D FV D G V++ E+NT+PG TP
Sbjct: 340 GLSRVDTFVTPD-GTVMVNEINTMPGFTP 367
>sp|Q88EV6|DDLA_PSEPK D-alanine--D-alanine ligase A OS=Pseudomonas putida (strain KT2440)
GN=ddlA PE=3 SV=1
Length = 352
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 152/395 (38%), Gaps = 72/395 (18%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADF 139
+ L+ GG S+E ++L SA ++ + V C IDR N Y P F
Sbjct: 6 IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWR-------YQGEPCQF 58
Query: 140 DFKLE------SLAQGFGSLSEFAEH---LAANVDIVFPTIHGRFGEDGGIQEVLEKYNV 190
++ S+ G SLS + + +D++FP +HGR+GEDG IQ + +
Sbjct: 59 PGAVDRSAPLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGL 118
Query: 191 PFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP--- 247
P VG+G A DK + G + VP W N + P
Sbjct: 119 PCVGSGVLGSAMAMDKDVTKRMVQSAGLVVVP----------------WLAMNSMRPWEE 162
Query: 248 -----NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302
S + VKP +GSSIGV+ ++ E D +V+VE + G E
Sbjct: 163 LVECLGSSTLFVKPATSGSSIGVSRVSNALEYAAAFAIAARE--DTKVLVEAAV-CGREI 219
Query: 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362
VL++ G V G + +E A ++Y+ KY P
Sbjct: 220 ECGVLELEEGLMASVV------------GEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLL 267
Query: 363 PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDIN 422
P ++ I+ + F+ L L +AR+D +FL TE G I+ +IN
Sbjct: 268 PPDIVARIQALSVQAFRCLELKGYARVD-FFL----------------TEEGEIILNEIN 310
Query: 423 LISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457
+ G S + G+ ++ ++ + S
Sbjct: 311 TLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLS 345
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F A+HG GEDGT+Q L G+P G GV+ S MDK T + + V +
Sbjct: 95 LFPALHGRWGEDGTIQGLAAMCGLPCVGSGVLGSAMAMDKDVTKRMVQSAGLVVVPWLAM 154
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742
+ R W EL L TL VKPA G S GV+R+
Sbjct: 155 NSMRP-----------WEELVECLGSSTLFVKPATSGSSIGVSRV 188
Score = 40.4 bits (93), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 819 EITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGG--TGINLTP--PPASIMSTEA 873
EI GV+ + G M S++ + KE + K+ TG+ + PP + +A
Sbjct: 218 EIECGVLELEEGLMASVVGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQA 277
Query: 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933
L R L+L+G++R+D F+ + GE+++ E+NT+PG T ++
Sbjct: 278 LSVQAFR------CLELKGYARVDFFLT-EEGEIILNEINTLPGFTSAS----------- 319
Query: 934 PMYPHQF 940
MYP F
Sbjct: 320 -MYPKMF 325
>sp|A1R7J5|DDL_ARTAT D-alanine--D-alanine ligase OS=Arthrobacter aurescens (strain TC1)
GN=ddl PE=3 SV=1
Length = 378
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 168/398 (42%), Gaps = 48/398 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---------NLNAYAISSA 129
RV ++ GG S+E +S +A V+ I + V I + + + +++SSA
Sbjct: 14 RVAILFGGRSSEHAVSCVTAAGVMGAIDKNKYEVIPIGIAKSGQWVLASGDTSEWSLSSA 73
Query: 130 QVYSNTPADFDFKLESLA---QGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLE 186
+ P+ L + Q + +VD+VFP +HG +GEDG IQ +LE
Sbjct: 74 ALPEVAPSGRTVTLAEVGGEHQLIVTEPNAVPQELGSVDVVFPLLHGPWGEDGTIQGLLE 133
Query: 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLD 246
+ +VG G A DK+ + G P + E + + V ++D
Sbjct: 134 LSDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYVAVTDREWSTDAEA---VRKRVD 190
Query: 247 PNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTA 304
V VKP RAGSS+G++ +DS++ I E D ++V+E + G E
Sbjct: 191 KLGFPVFVKPARAGSSMGIS----KVDSMEGLDAAIDEARRHDLKLVIEAGIV-GREIEC 245
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL G G D P +P E+ +V V E +++ KY+ A P P
Sbjct: 246 AVLQ-GRGTDA-PRTSMPGEI------AVAVGEHQ-FYDFAAKYVEDGAAALSCPADMPD 296
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
I +RE A++ F +G +R+D ++ P+ G ++ +IN +
Sbjct: 297 EAIARVRELAAVAFDAVGAEGLSRVDFFYTPA-----------------GELIINEINTM 339
Query: 425 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL 462
G S Q + G ++ +++ +I A +R L
Sbjct: 340 PGFTPKSMYPQMWAASGLAYGDLIDELIHLALTRKTGL 377
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 125/322 (38%), Gaps = 86/322 (26%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-----VATSLALN-----HL 687
VF +HG GEDGT+Q LLE Y G GV+AS MDK V S L+ +
Sbjct: 114 VFPLLHGPWGEDGTIQGLLELSDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYVAV 173
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
D T + VR++ D L P+ VKPAR G S G++++ E
Sbjct: 174 TDREWSTDAEAVRKRVDKLGFPVF----------------VKPARAGSSMGISKVDSMEG 217
Query: 748 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNA 806
L A++E +R H + L+ E + EI + Q +A
Sbjct: 218 LDA---AIDE----------ARRHDL---------KLVIEAGIVGREIECAVLQGRGTDA 255
Query: 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866
R G EI V V H K+ L+ P
Sbjct: 256 PRTSMPG-----EIAVAV-----GEHQF------------YDFAAKYVEDGAAALSCP-- 291
Query: 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926
+ M EA+ + ++ + +A+ EG SR+D F GE++I E+NT+PG TP +
Sbjct: 292 ADMPDEAIARVRELAAVAFDAVGAEGLSRVD-FFYTPAGELIINEINTMPGFTPKS---- 346
Query: 927 QALSEQPPMYPHQFFRKVLDLG 948
MYP + L G
Sbjct: 347 --------MYPQMWAASGLAYG 360
>sp|Q74LS5|DDL_LACJO D-alanine--D-alanine ligase OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=ddl PE=3 SV=1
Length = 361
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 166/390 (42%), Gaps = 52/390 (13%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN-LNAYAISSAQVYSNTP 136
++VGLI GG S+E +S+ SA ++ + I + V +I + A S +V N
Sbjct: 5 IKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNP- 63
Query: 137 ADFDFKLE-SLAQGFGSLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194
K+E + ++S E +D+ FP +HG GEDG +Q + + PFVG
Sbjct: 64 -----KMEVANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVG 118
Query: 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE---SELSNWFVTNKLDPNSGK 251
A DK + + G ++ E N+ +L +V ++L
Sbjct: 119 DDVLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQL---GSD 175
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 309
+ VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 176 LFVKPSNQGSSVGVS----HVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL--- 228
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
G D P+V ++ + KD+ + Y KY P + P ++ +
Sbjct: 229 --GND-KPIVAGVGQI---------INAKDSFYTYENKYDDDSTSTLEIPAKLPEGIVET 276
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
+R+ A +FQ ARID +E ++ T++N + G
Sbjct: 277 VRKNALKVFQATECSGLARIDSML----------------RSEDNEVVLTEVNALPGFTN 320
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + ++G +++++ +I +A R+
Sbjct: 321 ISMYPKLFEEIGIPYTDLITKLIDYAMERY 350
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/464 (22%), Positives = 171/464 (36%), Gaps = 123/464 (26%)
Query: 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 552
+V +IFGG++SE +VS+MS N++ + N +V P + + D + D D+
Sbjct: 6 KVGLIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWITN--------DGYLAD-DAD 55
Query: 553 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 612
SR V P +E P + A S++
Sbjct: 56 SRKVLDNP---------------KMEVANPHKVANISNII-------------------- 80
Query: 613 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 672
EL R I+ F VHG +GEDG LQ L P+ G V+A+
Sbjct: 81 ----ELKDRPEID-----------VFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAA 125
Query: 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPA 731
MDK T + LA + + K + K P + + +E + L VKP+
Sbjct: 126 VTMDKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPS 181
Query: 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791
G S GV+ + ++ V AL E F
Sbjct: 182 NQGSSVGVSHVTNEKEYKV---ALAEA------------------------------FKY 208
Query: 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 851
D++L + + GN + + VG I + K+S + E
Sbjct: 209 DDKVLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYEN 253
Query: 852 KFQGGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908
K+ + L P P I+ T + K + A + G +RID+ + ++ EV+
Sbjct: 254 KYDDDSTSTLEIPAKLPEGIVETVRKNALK-----VFQATECSGLARIDSMLRSEDNEVV 308
Query: 909 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952
+ EVN +PG T + ++ L E+ + K++D ER+
Sbjct: 309 LTEVNALPGFT--NISMYPKLFEEIGIPYTDLITKLIDYAMERY 350
>sp|P0A1F0|DDLA_SALTY D-alanine--D-alanine ligase A OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=ddlA PE=1 SV=2
Length = 364
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PA I S E DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 271 PAQIPS-EVNDKIRAIAIQAYQTLGCAGMARVDVFLTADN-EVVINEINTLPGFT 323
>sp|P0A1F1|DDLA_SALTI D-alanine--D-alanine ligase A OS=Salmonella typhi GN=ddlA PE=3 SV=2
Length = 364
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 164/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + ++ A+ Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDK-AGQWHVNDAENYLQNAD 62
Query: 135 TPADFDFKLE--SLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G +H N VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSAISLAQVPGK----HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ + DK A + G P L + N S V +
Sbjct: 119 MLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL--TRTNRHAFSFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
+L + VKP GSS+GV+ V + + + + L D +VVVE ++ G E
Sbjct: 177 RL---GLPLFVKPANQGSSVGVS---KVANEAQYQQAVALAFEFDHKVVVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVL-----------------NSEFYAYDTKYIDDNGAQVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ P V + IR A +Q LG AR+D + + V + T G FT+
Sbjct: 273 QIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLISRLIELALER 353
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---- 692
+F VHG +GEDG+LQ +L +P+ G V++S CMDK +A L D G+
Sbjct: 101 VIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDK---DVAKRLLRDAGLNIAP 157
Query: 693 -LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743
+T+ + R + E+ S+L L VKPA G S GV+++
Sbjct: 158 FITLTRTNRHAFS---------FAEVESRLGLP-LFVKPANQGSSVGVSKVA 199
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PA I S E DK + L G +R+D F+ DN EV+I E+NT+PG T
Sbjct: 271 PAQIPS-EVNDKIRAIAIQAYQTLGCAGMARVDVFLTADN-EVVINEINTLPGFT 323
>sp|B3EDF4|DDL_CHLL2 D-alanine--D-alanine ligase OS=Chlorobium limicola (strain DSM 245
/ NBRC 103803) GN=ddl PE=3 SV=1
Length = 363
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 117/282 (41%), Gaps = 57/282 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
VFIA+HG GEDG +Q LL+ G+PYTG GV AS MDK T L AD GV T
Sbjct: 103 VFIALHGSYGEDGRVQGLLDTMGIPYTGCGVSASAIAMDKALTKLC---AADAGVATAPS 159
Query: 698 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 757
+ L P + HEL L VKPA G S G+++
Sbjct: 160 ITLDADSYLADP--EPVHELVDSTFGYPLFVKPASLGSSVGISK---------------- 201
Query: 758 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 817
+ +P PE L + +IL + + K
Sbjct: 202 ----------------VHLPAALPEALKVACSYDR-KILVEAAVSGK------------- 231
Query: 818 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 877
EI V V+G + S+ P V+ D ++K+ T P + + + LD
Sbjct: 232 -EIEVAVLGNDRPVASV-PG-EVEPGSDFYDFQDKYIHNTAKTFIP---ARLPDKLLDSV 285
Query: 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + AL G SR+D FVN +NG +++ E+NT+PG T
Sbjct: 286 RCSAITVYKALGCRGMSRVDFFVNEENGSIVLNEINTIPGFT 327
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 47/300 (15%)
Query: 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFIT 220
AA +D+VF +HG +GEDG +Q +L+ +P+ G G A A DK L + G T
Sbjct: 97 AAGIDVVFIALHGSYGEDGRVQGLLDTMGIPYTGCGVSASAIAMDKALTKLCAADAGVAT 156
Query: 221 VPSFLLQGSEVNESELSNWFVTNKL-DPNSG-KVVVKPTRAGSSIGVTVAY---GVIDSL 275
PS L +S L++ ++L D G + VKP GSS+G++ + + ++L
Sbjct: 157 APSITLDA----DSYLADPEPVHELVDSTFGYPLFVKPASLGSSVGISKVHLPAALPEAL 212
Query: 276 KKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDV 335
K A D +++VE + G E VL G D PV +P EVE GS
Sbjct: 213 KVAC-----SYDRKILVEAAVS-GKEIEVAVL----GND-RPVASVPGEVE---PGS--- 255
Query: 336 REKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395
++++ KY+ + P R P +++S+R A +++ LG +R+D +F+
Sbjct: 256 ----DFYDFQDKYIHNTAKTF-IPARLPDKLLDSVRCSAITVYKALGCRGMSRVD-FFV- 308
Query: 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455
+ E G+I+ +IN I G S + G + ++ ++ +A
Sbjct: 309 --------------NEENGSIVLNEINTIPGFTDISMYPKLFEASGIPFTALIDKLLHYA 354
>sp|Q0K6M6|DDL_CUPNH D-alanine--D-alanine ligase OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=ddl PE=3 SV=1
Length = 327
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 153/380 (40%), Gaps = 84/380 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL +Q R ++A+
Sbjct: 16 KVGVLLGGRSAEREISLMSGNGVLAALQ-----------SRGVDAHG------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD L+S+ AE AA D VF +HGR+GEDG IQ +LE+ VP+ G+G
Sbjct: 52 FDPGLQSV----------AELAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK G T P F + ++ + ++ ++VKP R
Sbjct: 102 ASAMAMDKQATKRLWMTYGLAT-PRFAMLHADTDFDAVAADLGL--------PLIVKPAR 152
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT A + + +KA +D+ V+ E F++ G+E T ++ G +
Sbjct: 153 EGSSIGLTKVTAADQMRAAFEKAA-----ALDNDVIAETFID-GAELTCPIVGEGDSAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + +A ++Y+ KY T Y P V +R A
Sbjct: 207 LPV--------------IRIVAPEANYDYQNKYF-TDDTQYLCPSGLDPEVEREVRALAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
++ LG +AR D G ++N GM S +
Sbjct: 252 QSYRVLGCRGWARADLMLRAD-----------------GKPFLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSNILRTIIGHA 455
A VG S+ + + ++ A
Sbjct: 295 AARAVGISYEDFVMQVVAAA 314
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 68/145 (46%), Gaps = 34/145 (23%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
GFD P S+ E LA VFIA+HG GEDGT+Q LLE GVPYTG GV+A
Sbjct: 51 GFD-----PGLQSVAE---LAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVLA 102
Query: 671 SKTCMDKVAT-------SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723
S MDK AT LA A +L + D L P++
Sbjct: 103 SAMAMDKQATKRLWMTYGLATPRFA---MLHADTDFDAVAADLGLPLI------------ 147
Query: 724 KTLCVKPARDGCSTGVARLCCAEDL 748
VKPAR+G S G+ ++ A+ +
Sbjct: 148 ----VKPAREGSSIGLTKVTAADQM 168
>sp|P0A6K0|DDLA_SHIFL D-alanine--D-alanine ligase A OS=Shigella flexneri GN=ddlA PE=3
SV=1
Length = 364
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>sp|P0A6J8|DDLA_ECOLI D-alanine--D-alanine ligase A OS=Escherichia coli (strain K12)
GN=ddlA PE=3 SV=1
Length = 364
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>sp|P0A6J9|DDLA_ECO57 D-alanine--D-alanine ligase A OS=Escherichia coli O157:H7 GN=ddlA
PE=3 SV=1
Length = 364
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 65/398 (16%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEF 302
KL + VKP GSS+GV+ V + A + L D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVS---KVTSEEQYAIAVDLAFEFDHKVIVEQGIK-GREI 229
Query: 303 TAIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
VL D C +VL + Y KY+ P
Sbjct: 230 ECAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPA 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
+ + IR A +Q LG AR+D + P + V + T G FT+
Sbjct: 273 AIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTN 324
Query: 421 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
I++ + Q S G +++++ +I A R
Sbjct: 325 ISMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>sp|Q662G4|DDL_BORGA D-alanine--D-alanine ligase OS=Borrelia garinii (strain PBi) GN=ddl
PE=3 SV=1
Length = 361
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 165/393 (41%), Gaps = 60/393 (15%)
Query: 82 LICGGPSAERGISLNSARSV-LDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFD 140
LI GG S E IS SA S+ L + + + YID+ + + + S+ P D
Sbjct: 7 LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSV--SDPPKLID 64
Query: 141 FKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200
+ + + F+ + ++D+VFP +HGR GEDG IQ VL+ ++P +G G
Sbjct: 65 IDVLPIVSLLPGIGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGS 124
Query: 201 RQAFDKYDASLEMSKQGFITVP-------SFLLQGSEVNESELSNWFVTNKLDPNSGKVV 253
+ +KY L + VP + L EV N + V+
Sbjct: 125 AISSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEVKR---------NVREALGYPVI 175
Query: 254 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 311
VKP GSSIG+ VAY S + + I E + D +++E F+E +I+ +
Sbjct: 176 VKPAVLGSSIGINVAY----SENQIEFFIEEALKYDLTILIEKFIEAREIECSIIGNEKI 231
Query: 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIF-NYRRKY--LPTQQVAYHTPPRFPIVVIN 368
+ P EV +Q D IF +Y KY +P + ++ P + +
Sbjct: 232 K------IFSPGEVIVQ----------DFIFYDYDAKYSVIPGNSIIFNIPAQLETNQLL 275
Query: 369 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428
SI+E A L+++ L L AR+D +F+ + G I +IN I G
Sbjct: 276 SIKEYAFLVYKNLELRGMARVD-FFVEKKS---------------GKIYLNEINTIPGFT 319
Query: 429 QTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461
S + S G +++ +I +A + N
Sbjct: 320 DISMFAKMCSHDGLQFKDLVDNLINYAFQSYIN 352
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 865 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
PA + T L K+ L+ L+L G +R+D FV +G++ + E+NT+PG T
Sbjct: 266 PAQ-LETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKSGKIYLNEINTIPGFT 319
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 684
VF VHG GEDG +Q +L+ +P G G++ S +K L L
Sbjct: 90 VVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAISSNKYFCKLLL 137
>sp|A9B406|DDL_HERA2 D-alanine--D-alanine ligase OS=Herpetosiphon aurantiacus (strain
ATCC 23779 / DSM 785) GN=ddl PE=3 SV=1
Length = 361
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 156/394 (39%), Gaps = 55/394 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----------LNAYAISS 128
RVG++ GG S E +SL SAR+V++ + + V I RN L +
Sbjct: 5 RVGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQWLSGGDPLLALEQQAD 64
Query: 129 AQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
++ TP ++ Q GSL E + A +D++ P +HG FGEDG IQ V E
Sbjct: 65 QKMLGRTPQAGVVSETAIVQSAGSLPE--QTNVAALDVIIPVLHGPFGEDGTIQGVFEFA 122
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP-SFLLQGSEVNESELSNWFVTNKLDP 247
N+P+VG G A DK + G VP +L+ + E V +L+
Sbjct: 123 NLPYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEA----VYERLEA 178
Query: 248 N-SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII-LEGIDDRVVVELFLEGGSEFTAI 305
+ VKP GSS+G++ V + + A G+ G D R+VVE G I
Sbjct: 179 TLHYPMFVKPANLGSSVGIS---KVSNRAELATGMAEAAGYDRRIVVEQ----GINAREI 231
Query: 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 365
+ + D P V P E V + ++Y KYL Q + P
Sbjct: 232 EVAILGNDDPKPSV--PGE----------VLPANDFYDYADKYL-EGQTQFAIPAELDAA 278
Query: 366 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425
+RE A F+ + AR+D F ET G I +IN
Sbjct: 279 TSEQLREMAVTAFKAIDGAGLARVD---------FFVERET-------GAIYINEINTFP 322
Query: 426 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459
G S + G +S +L +I A R+
Sbjct: 323 GFTAMSQYPKLWEATGLGYSELLDRLIDLAIERY 356
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 120/319 (37%), Gaps = 75/319 (23%)
Query: 642 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR 701
+HG GEDGT+Q + E +PY G GV+A+ MDK L + A G+ + +
Sbjct: 105 LHGPFGEDGTIQGVFEFANLPYVGCGVLAASVGMDK---GLMKSAFAAAGLPQVPWQLVL 161
Query: 702 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLR 761
+ D P ++ L + L + VKPA G S G++++ +L
Sbjct: 162 RRDWQTQPEA-VYERLEATLHYP-MFVKPANLGSSVGISKVSNRAEL------------- 206
Query: 762 IPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEIT 821
A GM E D + Q N EI
Sbjct: 207 --------ATGMAEAAG-------------YDRRIVVEQGINAR-------------EIE 232
Query: 822 VGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQ 879
V ++G PSV V + D +K+ G P ++E L ++
Sbjct: 233 VAILGN----DDPKPSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQL---RE 285
Query: 880 RIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP-- 937
A+ G +R+D FV + G + I E+NT PG T A+S+ P ++
Sbjct: 286 MAVTAFKAIDGAGLARVDFFVERETGAIYINEINTFPGFT--------AMSQYPKLWEAT 337
Query: 938 ----HQFFRKVLDLGSERF 952
+ +++DL ER+
Sbjct: 338 GLGYSELLDRLIDLAIERY 356
>sp|B3R6V7|DDL_CUPTR D-alanine--D-alanine ligase OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=ddl PE=3 SV=1
Length = 327
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 159/387 (41%), Gaps = 85/387 (21%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL +Q R ++A+
Sbjct: 16 KVGVLLGGRSAEREISLMSGNGVLAALQ-----------SRGVDAHG------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD L+ + AE AA D VF +HGR+GEDG IQ +LE+ VP+ G+G
Sbjct: 52 FDPGLQGV----------AELAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK G T P F + ++ + + V + P ++VKP R
Sbjct: 102 ASALAMDKQATKRLWMTHGLAT-PRFAMLHADTD----FDAVVADLGLP----LIVKPAR 152
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT A + + KA +D+ V+ E F++ G+E T V+ G +
Sbjct: 153 EGSSIGLTKVTAADQMRAAFDKAA-----ALDNDVIAETFVD-GAELTCPVVGEGDTAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + +A ++Y+ KY T Y P V ++ A
Sbjct: 207 LPV--------------IRIVAPEANYDYQNKYF-TDDTQYLCPSGLDAEVERQVQALAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
++ LG +AR D V ++ GT ++N GM S +
Sbjct: 252 QAYRVLGCRGWARAD---------VMLRAD--------GTPFLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSN-ILRTIIGHACSRFPN 461
A VG S+ + +L+ + PN
Sbjct: 295 AARAVGISYEDFVLQVLAAATLDLHPN 321
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNHL 687
+LA VFIA+HG GEDGT+Q LLE GVPYTG GV+AS MDK AT L + H
Sbjct: 61 ELAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTH- 119
Query: 688 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747
G+ T + + + D+ L VKPAR+G S G+ ++ A+
Sbjct: 120 ---GLATPRFAMLHADTDFDAVVADL---------GLPLIVKPAREGSSIGLTKVTAADQ 167
Query: 748 L 748
+
Sbjct: 168 M 168
>sp|A5VIS1|DDL_LACRD D-alanine--D-alanine ligase OS=Lactobacillus reuteri (strain DSM
20016) GN=ddl PE=3 SV=1
Length = 378
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 170/390 (43%), Gaps = 50/390 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSNTP 136
L + L+ GG S+E +S SA ++ D + + V + ++ +Q ++ P
Sbjct: 5 LHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEP 64
Query: 137 ADFDFKLESLAQGFGSL---SEFAEHLAAN----VDIVFPTIHGRFGEDGGIQEVLEKYN 189
D + +A+ + + S A +A N +D FP IHG GEDG IQ + + N
Sbjct: 65 ED-----QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLN 119
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
P+VG+ A +FDK +S+ G P ++ + N+++ S + KL
Sbjct: 120 KPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVV--TPENQADYSWGRIEEKL---G 174
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
VKP + GSS+G+ + +KA + D +++VE + E +L
Sbjct: 175 NLTFVKPAKQGSSVGIHRVTNA-EEYEKALDDAFK-YDYKILVEQGIANPQEIEISILG- 231
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
+ HP+ G+V V + D ++Y K++ V + P + P +++
Sbjct: 232 ----NEHPIA--------SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDE 279
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
I + A ++ LG+ ARID FL S +V E +T G FT+I+L M +
Sbjct: 280 ITDMALKAYKALGMKGMARID--FLVDSNNVPYLGEP---NTLPG---FTNISLYPQMWE 331
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S G S+S+++ +I F
Sbjct: 332 VS---------GISYSDLIDRLIQLGLQEF 352
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 63/284 (22%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
F +HG +GEDGT+Q L + PY G + AS DK T ++
Sbjct: 98 FPVIHGNLGEDGTIQGLFKLLNKPYVGSNIAASAMSFDKDLTKKIISQAG---------- 147
Query: 699 VRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755
+R ++ TP W + KL T VKPA+ G S G+ R+ AE+ Y KAL
Sbjct: 148 IRNTPYVVVTPENQADYSWGRIEEKLGNLTF-VKPAKQGSSVGIHRVTNAEE---YEKAL 203
Query: 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815
++ F + + L+ +G +
Sbjct: 204 DDA--------FKYDYKI-----------------------------------LVEQGIA 220
Query: 816 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 875
EI + ++G + S + +V V + E KF +G+ P + +D
Sbjct: 221 NPQEIEISILGNEHPIASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVK--LPQYLVD 278
Query: 876 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ AL ++G +RID V+ +N L E NT+PG T
Sbjct: 279 EITDMALKAYKALGMKGMARIDFLVDSNNVPYL-GEPNTLPGFT 321
>sp|Q8FKE3|DDLA_ECOL6 D-alanine--D-alanine ligase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=ddlA PE=3 SV=1
Length = 364
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 164/397 (41%), Gaps = 63/397 (15%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY---SN 134
LRVG++ GG SAE +SL SA++++D I V ID+ + +S A Y ++
Sbjct: 4 LRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQ-GQWHVSDASNYLLNAD 62
Query: 135 TPADFDFK--LESLAQGFGSLSEFAEHLAAN---------VDIVFPTIHGRFGEDGGIQE 183
PA + SLAQ G EH + VD++FP +HG GEDG +Q
Sbjct: 63 DPAHIALRPSATSLAQVPGK----HEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQG 118
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+ A DK D + + + + + F+ + N +S V +
Sbjct: 119 MLRVANLPFVGSDVLASAACMDK-DVTKRLLRDAGLNIAPFITL-TRANRHNISFAEVES 176
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
KL + VKP GSS+GV+ + A + E D +V+VE ++ G E
Sbjct: 177 KL---GLPLFVKPANQGSSVGVSKVTSE-EQYTIAVDLAFE-FDHKVIVEQGIK-GREIE 230
Query: 304 AIVL--DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR 361
VL D C +VL + Y KY+ P
Sbjct: 231 CAVLGNDNPQASTCGEIVLTSD-----------------FYAYDTKYIDEDGAKVVVPAA 273
Query: 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 421
+ + IR A +Q LG AR+D + P + V + T G FT+I
Sbjct: 274 IAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPG--------FTNI 325
Query: 422 NLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458
++ + Q S G +++++ +I A R
Sbjct: 326 SMYPKLWQAS---------GLGYTDLITRLIELALER 353
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 694
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 695 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754
+ + R + E+ SKL L VKPA G S GV+++ E T+ V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYTIAVD- 209
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 874
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 875 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>sp|Q8PDW3|DDLA_XANCP D-alanine--D-alanine ligase A OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=ddlA PE=3 SV=1
Length = 373
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 168/409 (41%), Gaps = 52/409 (12%)
Query: 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVY- 132
G R +RVGLI GG SAE +SL SAR++L + ID+ + +S+ + +
Sbjct: 5 GMRRIRVGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQ-GQWHLSAQESFL 63
Query: 133 --SNTPADFDFKL--ESLAQGFGSLSEF-----AEHLAANVDIVFPTIHGRFGEDGGIQE 183
++ P+ + LA G+ S AE A +D+VFP +HG GEDG +Q
Sbjct: 64 LDADDPSRIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQG 123
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L N+PFVG+G A DK A + G P ++++
Sbjct: 124 LLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQF 183
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFT 303
L + VKP GSS+GV+ + A + L D +V+VE + G E
Sbjct: 184 GL-----PLFVKPANQGSSVGVSQVRSA-EEFSAALELALR-YDHKVLVEAAI-AGREIE 235
Query: 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP 363
VL + P + EV + DA ++Y+ KY+ A P
Sbjct: 236 CAVLG-----NATPQASVCGEVVVH----------DAFYSYQTKYIRDDGAATVIPADID 280
Query: 364 IVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423
+ I++ A +Q L AR+D VF ++ G I+ ++N
Sbjct: 281 AHTQHRIQQCALQAYQALDCAGMARVD---------VFLCAD--------GRIVINEVNT 323
Query: 424 ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS-YNSVSSH 471
+ G + S + G + +++ +I A R + Y+SV +H
Sbjct: 324 LPGFTRISMYPKLWEASGLDYRSLVTRLIELALERHADDGRLYSSVVTH 372
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 112/481 (23%), Positives = 179/481 (37%), Gaps = 146/481 (30%)
Query: 490 GIREVFV--IFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCS-----SGM 542
G+R + V IFGG ++E +VSL S N+ LQA + P L+ ID S
Sbjct: 5 GMRRIRVGLIFGGKSAEHEVSLQSARNI---LQALDPQRFEPVLI--GIDKQGQWHLSAQ 59
Query: 543 DANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEG 602
++ + D D SR+ LRH+ + A+ P A ++ LR
Sbjct: 60 ESFLLDADDPSRIA--------LRHSGRGL------AVLP--GAASAQLR---------- 93
Query: 603 LKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVP 662
+++ LA+ + VF VHG +GEDG+LQ LL +P
Sbjct: 94 --------------------AVDAEQALAQID--VVFPIVHGTLGEDGSLQGLLRMANLP 131
Query: 663 YTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ 722
+ G GV+ S MDK + K V R L P ++
Sbjct: 132 FVGSGVLGSAVAMDK----------------DMAKRVLRDAGLEVAPFACFTRHTAAQAD 175
Query: 723 CKTLC--------VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMI 774
+TL VKPA G S GV+++ AE+ + ALE L
Sbjct: 176 VQTLIAQFGLPLFVKPANQGSSVGVSQVRSAEEFSA---ALELAL--------------- 217
Query: 775 EMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 834
+ +++ + EI V+G S+
Sbjct: 218 -----------------------------RYDHKVLVEAAIAGREIECAVLGNATPQASV 248
Query: 835 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQL 890
V V ++ S + K+ G A+++ + + RI+ A AL
Sbjct: 249 CGEVVVHDA--FYSYQTKYIRDDG------AATVIPADIDAHTQHRIQQCALQAYQALDC 300
Query: 891 EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950
G +R+D F+ D G ++I EVNT+PG T + ++ L E + ++++L E
Sbjct: 301 AGMARVDVFLCAD-GRIVINEVNTLPGFT--RISMYPKLWEASGLDYRSLVTRLIELALE 357
Query: 951 R 951
R
Sbjct: 358 R 358
>sp|Q03QZ9|DDL_LACBA D-alanine--D-alanine ligase OS=Lactobacillus brevis (strain ATCC
367 / JCM 1170) GN=ddl PE=3 SV=1
Length = 380
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 163/390 (41%), Gaps = 50/390 (12%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA---QVY-- 132
L VGL+ GG S+E +S SA ++ D + D V + + R+ + +S A +V+
Sbjct: 7 LHVGLLFGGNSSEHDVSKRSAHNIYDAMDKDRYNVSLFLLTRD--GFVLSDAASRRVFDG 64
Query: 133 ---SNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYN 189
+ A+ K+++ + + ++ A ++D+ FP IHG GEDG IQ +
Sbjct: 65 EDEATVAAEEQAKVDA-SNPLAPIWNLSQ--AKDIDVFFPIIHGNLGEDGTIQGLFRLLK 121
Query: 190 VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS 249
PFVG+G A +FDK ++ G +L + N ++ + ++L N
Sbjct: 122 KPFVGSGVLASAVSFDKDMTKQVLTAHGIRNTKYVVL--TPDNRADFDYATIQSRLGDN- 178
Query: 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309
V +KP GSS+G+ A V + L D +V+VE ++G E +L
Sbjct: 179 --VFIKPANQGSSVGIHKASNVQEYLDGVADAFR--YDYKVLVEQTIDGPQEVEISILGN 234
Query: 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 369
P +L G++ V E D ++Y K++ V + P + +
Sbjct: 235 EQ----------PQASKL---GAIRVPESDVFYDYNNKFVDASGVTFEVPVKLSDELTQE 281
Query: 370 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 429
I + + LGL ARID Y ++ G ++N + G
Sbjct: 282 ITQMGLQTYAALGLKGMARID-----------------YLVSKDGVPYVGEVNTLPGFTN 324
Query: 430 TSFLFQQASKVGFSHSNILRTIIGHACSRF 459
S Q G ++++++ +I A S F
Sbjct: 325 ISLYPQLWQATGINYADLIDRLIELALSEF 354
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 108/283 (38%), Gaps = 61/283 (21%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTIN 696
F +HG +GEDGT+Q L P+ G GV+AS DK T L + + + + +
Sbjct: 100 FPIIHGNLGEDGTIQGLFRLLKKPFVGSGVLASAVSFDKDMTKQVLTAHGIRNTKYVVLT 159
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
D R D + + S+L + +KPA G S G+ + A ++ Y+ +
Sbjct: 160 PDNRADFD---------YATIQSRL-GDNVFIKPANQGSSVGIHK---ASNVQEYLDGVA 206
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
+ ++ V ++ + Q
Sbjct: 207 DAFR-------------------------YDYKVLVEQTIDGPQ---------------- 225
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 876
E+ + ++G S + ++ V ES KF +G+ P +S E +
Sbjct: 226 --EVEISILGNEQPQASKLGAIRVPESDVFYDYNNKFVDASGVTFEVPVK--LSDELTQE 281
Query: 877 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
Q AL L+G +RID V+ D G + EVNT+PG T
Sbjct: 282 ITQMGLQTYAALGLKGMARIDYLVSKD-GVPYVGEVNTLPGFT 323
>sp|Q8KCR8|DDL_CHLTE D-alanine--D-alanine ligase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=ddl PE=3 SV=1
Length = 364
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 155/380 (40%), Gaps = 59/380 (15%)
Query: 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--------- 130
V L GG SAE IS+ SARS+ I + + YIDR+ +A +Q
Sbjct: 6 VALFFGGKSAEHEISIISARSIAAQIDRNRYELSPLYIDRDGKWHASECSQQVLDTDIAA 65
Query: 131 -VYSNTPADFDFKLESL-AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
+ S TP +L+ L A G +F L N D+ F +HG +GEDG +Q L+ +
Sbjct: 66 LLRSGTPESAGKRLDELTAAAAGECFDFGSFLK-NTDVAFIALHGSYGEDGKLQGCLDTF 124
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF-VTNKLDP 247
+P+ G G A A DK L G + + L +T + D
Sbjct: 125 GIPYTGCGLTASALAMDKVLTKLCAMNAGIAVAEFMTITSCAYMANPLETIVEITKRFD- 183
Query: 248 NSGKVVVKPTRAGSSIGVTV---AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 304
+ VKP GSS+G++ A + +L+ A G+D + +VE + G E
Sbjct: 184 --WPLFVKPASLGSSVGISKVRNAEELAAALENAC-----GLDSKALVEAAIS-GREIEV 235
Query: 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 364
VL + P+ P E+ GS ++Y KY+ + P P
Sbjct: 236 AVLG-----NSDPLASEPGEI---IPGS-------DFYSYEDKYI-KNEAKIVIPADLPE 279
Query: 365 VVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 424
V +R+ A +F+ LG AR+D +F+ + T+ ++ +IN I
Sbjct: 280 GVAEEVRKAALTVFKALGCEGMARVD-FFVENGTN---------------RVILNEINTI 323
Query: 425 SGMEQTSF--LFQQASKVGF 442
G S + AS +GF
Sbjct: 324 PGFTDISMYPMMMAASGIGF 343
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL-ALNH-LADL 690
+N FIA+HG GEDG LQ L+ G+PYTG G+ AS MDKV T L A+N +A
Sbjct: 98 KNTDVAFIALHGSYGEDGKLQGCLDTFGIPYTGCGLTASALAMDKVLTKLCAMNAGIAVA 157
Query: 691 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 750
+TI + P+ I E+T + L VKPA G S G++++ AE+L
Sbjct: 158 EFMTITSCA-----YMANPLETIV-EITKRFDWP-LFVKPASLGSSVGISKVRNAEELAA 210
Query: 751 YVK 753
++
Sbjct: 211 ALE 213
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 819 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 878
EI V V+G + S P + S D S E+K+ + P + ++ +
Sbjct: 232 EIEVAVLGNSDPLAS-EPGEIIPGS-DFYSYEDKYIKNEAKIVIPAD---LPEGVAEEVR 286
Query: 879 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
+ + AL EG +R+D FV V++ E+NT+PG T
Sbjct: 287 KAALTVFKALGCEGMARVDFFVENGTNRVILNEINTIPGFT 327
>sp|Q12EL3|DDL_POLSJ D-alanine--D-alanine ligase OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=ddl PE=3 SV=1
Length = 338
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 153/374 (40%), Gaps = 83/374 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+V ++ GG SAER ISL S R VL ++ R ++A+A PA+
Sbjct: 23 KVAVLMGGMSAEREISLMSGRGVLQALR-----------SRGVDAHAFD--------PAE 63
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
D + L + EFA F +HGRFGEDG +Q LE +P+ G+G
Sbjct: 64 RD--ISELKK-----DEFAR--------CFIALHGRFGEDGTVQGALELLGIPYTGSGVM 108
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK M +G T LL+ +++S V +KL ++VKP R
Sbjct: 109 ASSMAIDKVMTKRVMLAEGLPTPTYVLLRRGSYGSADVSA--VPDKLGL---PLIVKPAR 163
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT G+ D++ +A E +D ++ E F+ G E T VL GS
Sbjct: 164 EGSSIGLTKVTERAGMADAVAQA-----EKLDADILCEQFIS-GDEVTCPVLGTGSEARA 217
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + D ++Y+ KY T Y P P EG
Sbjct: 218 LPV--------------IRIVAPDGNYDYQNKYF-TDTTQYLVPCGLP--------EGEE 254
Query: 376 LLFQRLGLCDFARID--GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 433
+ Q+L L + ++ GW + V T+ +IN GM S +
Sbjct: 255 AVIQQLVLQAYRTLNCRGW---ARADVMIDKVTR-------KPYLLEINTSPGMTGHSLV 304
Query: 434 FQQASKVGFSHSNI 447
A G S+ ++
Sbjct: 305 PMSARAAGISYEDL 318
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 619 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 678
P I+E L K+ A FIA+HG GEDGT+Q LE G+PYTG GVMAS +DKV
Sbjct: 61 PAERDISE---LKKDEFARCFIALHGRFGEDGTVQGALELLGIPYTGSGVMASSMAIDKV 117
Query: 679 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 738
T + LA+ G+ T + R+ + + +L L VKPAR+G S G
Sbjct: 118 MTKRVM--LAE-GLPTPTYVLLRRGSYGSADVSAVPDKLG-----LPLIVKPAREGSSIG 169
Query: 739 VARL 742
+ ++
Sbjct: 170 LTKV 173
>sp|Q88UV8|DDL_LACPL D-alanine--D-alanine ligase OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=ddl PE=3 SV=1
Length = 370
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 169/390 (43%), Gaps = 64/390 (16%)
Query: 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA---QVY 132
+ + VG++ GG S+E +S SA ++ D + + + + I +N +S A +V+
Sbjct: 5 KKIHVGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKN--GIVLSDAATRRVF 62
Query: 133 SNTPADFDFKLE----SLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKY 188
P D E ++ + LA ++DI +P +HG GEDG +Q + +
Sbjct: 63 DGEPEDQVVAEEMPKLDMSDPLAPIKNLT--LAKDIDIFYPVVHGNLGEDGTLQGLFKLL 120
Query: 189 NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN 248
P+VG+G A +FDK D + ++ I +++ E N +++ ++ +
Sbjct: 121 KKPYVGSGVLASAASFDK-DITKQILTHHHIQNTKYVVVTPE-NRDQMTYAYLQAHV--- 175
Query: 249 SGKVVVKPTRAGSSIGVTVAY-------GVIDSLKKAKGIIL-EGIDDRVVVELFLEGGS 300
+ +KP GSSIG+ A G+ D+ K I++ E ID+ VE + G
Sbjct: 176 GDHLFIKPANQGSSIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREVECSILGNE 235
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
A L G++DV + D ++Y K++ V + P
Sbjct: 236 NPKASKL-----------------------GAIDVPKTDTFYDYNNKFVDASGVTFELPV 272
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL-FT 419
P + I++ + F+ LGL AR+D FL S E G E T+ FT
Sbjct: 273 ELPADLTKRIQQMSLDAFKALGLKGMARVD--FLVS-----EDGEPYLG--EINTLPGFT 323
Query: 420 DINL------ISGMEQTSFLFQQASKVGFS 443
+I+L +SG+ T+ L Q ++GF
Sbjct: 324 NISLYPKLWEVSGISYTA-LIDQLIQLGFD 352
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 117/289 (40%), Gaps = 73/289 (25%)
Query: 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698
+ VHG +GEDGTLQ L + PY G GV+AS DK T L H
Sbjct: 100 YPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDITKQILTH----------HH 149
Query: 699 VRRKEDLLKTPIVDIWHELT-SKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKA 754
++ + ++ TP + ++T + LQ L +KPA G S G+ + AE+ Y+
Sbjct: 150 IQNTKYVVVTP--ENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHK---AENEQEYLDG 204
Query: 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 814
L + + D + +S + N
Sbjct: 205 LADAF-------------------------------KYDYKILVEESID----------N 223
Query: 815 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMST 871
R VE + ++G S + ++ V ++ KF +G+ P PA
Sbjct: 224 PREVECS--ILGNENPKASKLGAIDVPKTDTFYDYNNKFVDASGVTFELPVELPAD---- 277
Query: 872 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
L K Q++ L A AL L+G +R+D V+ D GE + E+NT+PG T
Sbjct: 278 --LTKRIQQMSLDAFKALGLKGMARVDFLVSED-GEPYLGEINTLPGFT 323
>sp|Q1G7Q5|DDL_LACDA D-alanine--D-alanine ligase OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=ddl PE=3
SV=1
Length = 362
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 161/389 (41%), Gaps = 51/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTP 136
+VGLI GG S+E +S+ SA ++ I D V +I + Y S A Y P
Sbjct: 6 QVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNS--GYVASEADSYKVLEEP 63
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
K + A +L E A +D++FP +HG GEDG +Q + + PFVG
Sbjct: 64 GYMVEKNDKTAN-LSNLIELASR--PELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++++ + + + +LS +V+ +L +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRY--EYEDAKNQKLSYDWVSGQL--GTSN 176
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP+ GSS+G+T V D A+ + DD+V+VE + G TA++
Sbjct: 177 LFVKPSNQGSSVGIT---HVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVL---- 229
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D HPVV ++ + + ++Y KY P + P +
Sbjct: 230 -GND-HPVVSGVGQI---------INADNTWYSYENKYSTESTTTLQIPAQIPAETAEKV 278
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A ++Q AR+D S G ++F ++N + G
Sbjct: 279 QENALKIYQITECSGMARVDSMLRESD----------------GEVIFNELNALPGFTNI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S+ +++ +I A R+
Sbjct: 323 SMYPKLFEEAGISYPDLITRLIRLAEERY 351
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 66/321 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG LQ L P+ G V+A+ MDK T + LA + + K
Sbjct: 91 LFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAVTMDKEFTKI----LAQRAGVPVAK 146
Query: 698 DVRRK----EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V K ED + W ++ +L L VKP+ G S G+ + D + Y +
Sbjct: 147 WVSIKRYEYEDAKNQKLSYDW--VSGQLGTSNLFVKPSNQGSSVGITHVT---DDSNYAE 201
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E ++L+ E V T+
Sbjct: 202 ALAEAF------------------KYDDKVLVEEGIVGTE-------------------- 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
VE V G+ H ++ V + S E K+ + L P +
Sbjct: 224 ----VETAV-----LGNDHPVVSGVGQIINADNTWYSYENKYSTESTTTLQIPAQ--IPA 272
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E +K ++ I + G +R+D+ + +GEV+ E+N +PG T + ++ L E
Sbjct: 273 ETAEKVQENALKIYQITECSGMARVDSMLRESDGEVIFNELNALPGFT--NISMYPKLFE 330
Query: 932 QPPMYPHQFFRKVLDLGSERF 952
+ + +++ L ER+
Sbjct: 331 EAGISYPDLITRLIRLAEERY 351
>sp|Q04CI2|DDL_LACDB D-alanine--D-alanine ligase OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=ddl PE=3 SV=1
Length = 362
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 161/389 (41%), Gaps = 51/389 (13%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTP 136
+VGLI GG S+E +S+ SA ++ I D V +I + Y S A Y P
Sbjct: 6 QVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNS--GYVASEADSYKVLEEP 63
Query: 137 ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
K + A +L E A +D++FP +HG GEDG +Q + + PFVG
Sbjct: 64 GYMVEKNDKTAN-LSNLIELASR--PELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120
Query: 197 SRACRQAFDKYDASLEMSKQG-----FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK 251
A DK + + G ++++ + + + +LS +V+ +L +
Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRY--EYEDAKNQKLSYDWVSGQL--GTSN 176
Query: 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 310
+ VKP+ GSS+G+T V D A+ + DD+V+VE + G TA++
Sbjct: 177 LFVKPSNQGSSVGIT---HVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVL---- 229
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G D HPVV ++ + + ++Y KY P + P +
Sbjct: 230 -GND-HPVVSGVGQI---------INADNTWYSYENKYSTESTTTLQIPAQIPAETAEKV 278
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
+E A ++Q AR+D S G ++F ++N + G
Sbjct: 279 QENALKIYQITECSGMARVDSMLRESD----------------GEVIFNELNALPGFTNI 322
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSRF 459
S + + G S+ +++ +I A R+
Sbjct: 323 SMYPKLFEEAGISYPDLITRLIRLAEERY 351
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 66/321 (20%)
Query: 638 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 697
+F VHG +GEDG LQ L P+ G V+A+ MDK T + LA + + K
Sbjct: 91 LFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAVTMDKEFTKI----LAQRAGVPVAK 146
Query: 698 DVRRK----EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753
V K ED + W ++ +L L VKP+ G S G+ + D + Y +
Sbjct: 147 WVSIKRYEYEDAKNQKLSYDW--VSGQLGTSNLFVKPSNQGSSVGITHVT---DDSNYAE 201
Query: 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813
AL E ++L+ E V T+
Sbjct: 202 ALAEAF------------------KYDDKVLVEEGIVGTE-------------------- 223
Query: 814 NSRWVEITVGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMST 871
VE V G+ H ++ V + S E K+ + L P +
Sbjct: 224 ----VETAV-----LGNDHPVVSGVGQIINADNTWYSYENKYSTESTTTLQIPAQ--IPA 272
Query: 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 931
E +K ++ I + G +R+D+ + +GEV+ E+N +PG T + ++ L E
Sbjct: 273 ETAEKVQENALKIYQITECSGMARVDSMLRESDGEVIFNELNALPGFT--NISMYPKLFE 330
Query: 932 QPPMYPHQFFRKVLDLGSERF 952
+ + +++ L ER+
Sbjct: 331 EAGISYPDLITRLIRLAEERY 351
>sp|B4S8W3|DDL_PROA2 D-alanine--D-alanine ligase OS=Prosthecochloris aestuarii (strain
DSM 271 / SK 413) GN=ddl PE=3 SV=1
Length = 360
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 165/386 (42%), Gaps = 65/386 (16%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-------- 130
RV LI GG S E IS+ SAR++ +HI + + Y+ + + +AQ
Sbjct: 5 RVALIFGGQSTEHEISIISARAIANHIDTEAYELYPIYVGHDGAWFKGETAQKVLDLDMP 64
Query: 131 -VYSNTPAD-FDFKLESLAQGFGS-----LSEFAEHLAANVDIVFPTIHGRFGEDGGIQE 183
+ +NT AD +L ++ F L +F+E +D+ P IHG GEDG IQ
Sbjct: 65 AMLANTSADTIRERLREIS--FSDPRNRFLFDFSEE---GIDVALPIIHGSTGEDGKIQG 119
Query: 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTN 243
+L+ ++VP+ G G A DK + G P ++ ++ + V+
Sbjct: 120 LLDMFSVPYTGCGVHASAMTMDKETTKICAEHAGLHIAPYTTIR--KLRYQQDPQQVVSV 177
Query: 244 KLDPNSGKVVVKPTRAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGS 300
L+ + VKP GSSIG+T + + +L+KA +D +V++E +E G
Sbjct: 178 ILEEFTLPFFVKPASQGSSIGITKVHRPEELAAALEKAF-----MVDTKVLIEKTIE-GR 231
Query: 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360
E VL G D PV +P EVE +++ KY+ + + H P
Sbjct: 232 EIEVAVL----GNDS-PVASVPGEVE----------PGGDFYDFTDKYI-NGKASLHIPA 275
Query: 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420
R P V+ + A ++ L +R+D +F+ +T G I+ +
Sbjct: 276 RLPEEVLQKVSTEALKAYRALECRGMSRVD-FFIEHAT---------------GKIILNE 319
Query: 421 INLISGMEQTSF--LFQQASKVGFSH 444
IN + G S + AS + FS
Sbjct: 320 INTVPGFTGISMYPMMMDASGIDFSQ 345
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 169/429 (39%), Gaps = 110/429 (25%)
Query: 494 VFVIFGGDTSERQVSLMSGTNV--WLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 551
V +IFGG ++E ++S++S + ++ +A+ E+ P + G D ++
Sbjct: 6 VALIFGGQSTEHEISIISARAIANHIDTEAY---ELYPIYV--------GHDGAWFKGET 54
Query: 552 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 611
+ +V+ L +L +T+ + + + I S RN+ + D E G
Sbjct: 55 AQKVL-DLDMPAMLANTSADTIRERLREIS------FSDPRNRFLFDFSE--------EG 99
Query: 612 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671
D+A LP+ +HG GEDG +Q LL+ VPYTG GV AS
Sbjct: 100 IDVA--LPI---------------------IHGSTGEDGKIQGLLDMFSVPYTGCGVHAS 136
Query: 672 KTCMDKVATSLALNHLA-DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730
MDK T + H + T + +R ++D + V I E T VKP
Sbjct: 137 AMTMDKETTKICAEHAGLHIAPYTTIRKLRYQQDPQQVVSV-ILEEFTLP-----FFVKP 190
Query: 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790
A G S G+ ++ E+L ALE+ + V
Sbjct: 191 ASQGSSIGITKVHRPEELAA---ALEKAFM-----------------------------V 218
Query: 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 850
+T +++ + EI V V+G + S+ P V+ GD
Sbjct: 219 DT---------------KVLIEKTIEGREIEVAVLGNDSPVASV-PG-EVEPGGDFYDFT 261
Query: 851 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 910
+K+ G P + + E L K AL+ G SR+D F+ G++++
Sbjct: 262 DKYINGKASLHIP---ARLPEEVLQKVSTEALKAYRALECRGMSRVDFFIEHATGKIILN 318
Query: 911 EVNTVPGMT 919
E+NTVPG T
Sbjct: 319 EINTVPGFT 327
>sp|Q98JS0|DDLA_RHILO D-alanine--D-alanine ligase A OS=Rhizobium loti (strain MAFF303099)
GN=ddlA PE=3 SV=1
Length = 357
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 158/388 (40%), Gaps = 48/388 (12%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSN---- 134
RV ++ GG SAE +S SA +VL I V I R+ S++ ++
Sbjct: 6 RVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSEAGADGAGA 65
Query: 135 -TPADFDFKLESLAQGFGSLSEFAEH--LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVP 191
P D ++ L G G L ++ VD+VFP +HG FGEDG +Q E +V
Sbjct: 66 QVPED-GVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADVA 124
Query: 192 FVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSG 250
+VG G A A DK A + + G S +L+G + E++
Sbjct: 125 YVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVGSFQEIAGALGL-------- 176
Query: 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310
KP R GSS GV+ + D ++A L D + ++E F++ G E VL+
Sbjct: 177 PFFAKPARQGSSFGVSKVHDR-DGFEQAVETALR-YDSKALIEEFVD-GREIECSVLERA 233
Query: 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 370
G + + G + +K + Y KY + P P V+
Sbjct: 234 DG-----------SLTVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVART 282
Query: 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430
E A+ F+ LG AR+D +FL + G++L ++N + G
Sbjct: 283 SEMAARAFRALGCEAMARVD-FFLRAD----------------GSLLVNEVNTLPGFTDI 325
Query: 431 SFLFQQASKVGFSHSNILRTIIGHACSR 458
S + + G +S ++ +I HA +R
Sbjct: 326 SMYAKALAAAGIGYSKVIDVLIEHALAR 353
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 115/294 (39%), Gaps = 80/294 (27%)
Query: 637 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 696
VF +HG GEDG++Q E V Y G G++AS MDK +A L + G+
Sbjct: 99 VVFPVLHGPFGEDGSVQGYAEVADVAYVGCGILASAAAMDK---DVAKRLLREAGLA--- 152
Query: 697 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 756
V R +LK V + E+ L KPAR G S GV+++ D + +A+E
Sbjct: 153 --VARSVTVLKGD-VGSFQEIAGALGLPFFA-KPARQGSSFGVSKV---HDRDGFEQAVE 205
Query: 757 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 816
L S+A + E FV+ EI
Sbjct: 206 TAL-----RYDSKA--------------LIEEFVDGREI--------------------- 225
Query: 817 WVEITVGVIGKCGSMHSLMPSVTVKESGDIL--------SLEEKFQGGTGINLTPP---P 865
+C + S+TV G+I+ + E K+ G + P P
Sbjct: 226 ----------ECSVLERADGSLTVSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVP 275
Query: 866 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919
A +++ + + AL E +R+D F+ D G +L+ EVNT+PG T
Sbjct: 276 ADVVA-----RTSEMAARAFRALGCEAMARVDFFLRAD-GSLLVNEVNTLPGFT 323
>sp|A9I4V9|DDL_BORPD D-alanine--D-alanine ligase OS=Bordetella petrii (strain ATCC
BAA-461 / DSM 12804 / CCUG 43448) GN=ddl PE=3 SV=1
Length = 326
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 162/399 (40%), Gaps = 89/399 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER +SL S + V A+ SA V ++
Sbjct: 17 KVGVLYGGRSAERDVSLMSGKGVHQ---------------------ALLSAGVDAHL--- 52
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD G +L+E A AA D VF +HGR+GEDG +Q LE +P+ G+G
Sbjct: 53 FD-------TGERTLAELA---AAGFDRVFIALHGRYGEDGTLQGALELLGLPYTGSGPM 102
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A + DK + G T P+F EV +++ V ++L +++KP
Sbjct: 103 ASSLSMDKIMTKRVWLQHGLRT-PAF-----EVLDAQAELRTVPDRL---GLPLILKPPH 153
Query: 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318
GS++G+T G D +K+ + DD V+ E F+ G E T VL G+ PV
Sbjct: 154 EGSTVGITKVAGYSD-MKEGYAQAAK-FDDEVLAEQFI-AGRELTVAVLGTGAAAHALPV 210
Query: 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378
+++ ++Y KY + + Y P P V + + A +
Sbjct: 211 --------------IEIVAPGGNYDYEHKYF-SDETQYFCPADLPDAVAAEVADLAVRAY 255
Query: 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 438
+ LG + RID F+ + + W + N GM S + A
Sbjct: 256 RALGCAGWGRID--FMLDAD-----------NRPW----LLEANTSPGMTSHSLVPMAAK 298
Query: 439 KVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSS 477
+G S++ + +I+ A + H P R+S
Sbjct: 299 AIGMSYAELCVSIVSEAACKV-----------HSPARNS 326
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 117/301 (38%), Gaps = 74/301 (24%)
Query: 629 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 686
+LA VFIA+HG GEDGTLQ LE G+PYTG G MAS MDK+ T + L H
Sbjct: 62 ELAAAGFDRVFIALHGRYGEDGTLQGALELLGLPYTGSGPMASSLSMDKIMTKRVWLQHG 121
Query: 687 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 744
VL ++R D L P++ +KP +G + G+ ++
Sbjct: 122 LRTPAFEVLDAQAELRTVPDRLGLPLI----------------LKPPHEGSTVGITKVAG 165
Query: 745 AEDLTV-YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803
D+ Y +A + F+ DE+L
Sbjct: 166 YSDMKEGYAQAAK-----------------------------FD-----DEVLAEQFIAG 191
Query: 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 863
+ E+TV V+G + H+L P + + G E K+
Sbjct: 192 R--------------ELTVAVLGTGAAAHAL-PVIEIVAPGGNYDYEHKYFSDETQYFC- 235
Query: 864 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 923
PA + A + + AL G+ RID ++ DN ++E NT PGMT ++
Sbjct: 236 -PADLPDAVAAEVADLAVRAY-RALGCAGWGRIDFMLDADN-RPWLLEANTSPGMTSHSL 292
Query: 924 L 924
+
Sbjct: 293 V 293
>sp|A4J5G8|DDL_DESRM D-alanine--D-alanine ligase OS=Desulfotomaculum reducens (strain
MI-1) GN=ddl PE=3 SV=1
Length = 312
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 158/383 (41%), Gaps = 75/383 (19%)
Query: 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPA 137
LR+G++CGG SAER +SL S +V A+ +A
Sbjct: 3 LRIGVLCGGRSAEREVSLRSGEAVYQ---------------------ALMAAGYNDVVKI 41
Query: 138 DFDFKLESLAQGFGSLSEFAEHLAAN-VDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTG 196
D + L E L N + + F +HG++GEDG IQ +LE ++P+ G+G
Sbjct: 42 DVGYDL-------------VEQLKGNEIQVAFLALHGKYGEDGTIQGLLEMLDIPYTGSG 88
Query: 197 SRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255
A A +K A+ ++ K I P+F ++ EV + L + + VVK
Sbjct: 89 VLASALAINKI-ATKKIFKMEGIPTPAFSVITKKEVEDKSLQEAAL-RAIKEVGVPAVVK 146
Query: 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GS+IG+T + V + + +A L+ D V+VE F+ G+E TA VL S
Sbjct: 147 ANTQGSTIGITFVH-VKEKMAEAIESALK-YDQDVLVEQFV-AGTEVTASVLGNNS---- 199
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
P + L +++ +++Y+ KY P + PPR P + I+E A
Sbjct: 200 ------PEALPL-----IEITSVTGVYDYQSKYTPGMS-DHIIPPRLPQDIQEKIKELAI 247
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
F LG RID F+ ++ ++N + GM TS
Sbjct: 248 KSFLSLGCRGLGRID--FIIRDNQPYA----------------LEVNTLPGMTATSLFPD 289
Query: 436 QASKVGFSHSNILRTIIGHACSR 458
A+ G S + +I A +
Sbjct: 290 AANYAGISFPELTDRLIKLALEQ 312
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 14/71 (19%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATV-FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669
G+D+ ++L K N+ V F+A+HG GEDGT+Q LLE +PYTG GV+
Sbjct: 44 GYDLVEQL-------------KGNEIQVAFLALHGKYGEDGTIQGLLEMLDIPYTGSGVL 90
Query: 670 ASKTCMDKVAT 680
AS ++K+AT
Sbjct: 91 ASALAINKIAT 101
>sp|Q46WZ6|DDL_CUPPJ D-alanine--D-alanine ligase OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=ddl PE=3 SV=1
Length = 327
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 162/380 (42%), Gaps = 84/380 (22%)
Query: 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPAD 138
+VG++ GG SAER ISL S VL +Q R ++A+
Sbjct: 16 KVGVLYGGRSAEREISLMSGSGVLAALQ-----------SRGVDAHG------------- 51
Query: 139 FDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198
FD +S+ AE AA D VF +HGR+GEDG +Q +LE+ VP+ G+G
Sbjct: 52 FDPATQSV----------AELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGVPYTGSGVL 101
Query: 199 ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258
A A DK A+ + ++ P F + ++ + + V + P ++VKP R
Sbjct: 102 ASALAMDK-QATKRLWMTHDLSTPRFAMLYADTD----FDAVVADLGLP----LIVKPAR 152
Query: 259 AGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315
GSSIG VT A + ++ +KA +D+ V+ E F++ G+E T ++ G+ +
Sbjct: 153 EGSSIGLSKVTDASQMREAFEKAA-----ALDNDVIAETFID-GAELTCPLVGEGATAEA 206
Query: 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 375
PV + + D+ ++Y+ KY T Y P V +++ A
Sbjct: 207 LPV--------------IRIVAPDSNYDYQNKYF-TDDTQYLCPSGLSAEVEREVQQLAV 251
Query: 376 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435
++ LG +AR D V ++ G ++N GM S +
Sbjct: 252 QAYRVLGCRGWARAD---------VMLRAD--------GKPFLLEMNTSPGMTGHSLVPM 294
Query: 436 QASKVGFSHSNILRTIIGHA 455
A G S+ + + ++ A
Sbjct: 295 AARAAGISYEDFVMQVVAAA 314
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 124/313 (39%), Gaps = 80/313 (25%)
Query: 611 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670
GFD P S+ E LA VFIA+HG GEDGT+Q LLE GVPYTG GV+A
Sbjct: 51 GFD-----PATQSVAE---LAAAGFDRVFIALHGRYGEDGTMQGLLEQLGVPYTGSGVLA 102
Query: 671 SKTCMDKVATS-LALNH---LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 726
S MDK AT L + H +L + D L P++
Sbjct: 103 SALAMDKQATKRLWMTHDLSTPRFAMLYADTDFDAVVADLGLPLI--------------- 147
Query: 727 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786
VKPAR+G S G++++ A + +F +A + +I
Sbjct: 148 -VKPAREGSSIGLSKVTDASQMR---------------EAFEKAAAL-------DNDVIA 184
Query: 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 846
E F++ E+T ++G+ G+ +P + +
Sbjct: 185 ETFIDG-------------------------AELTCPLVGE-GATAEALPVIRIVAPDSN 218
Query: 847 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 906
+ K+ L P S +S E + +Q L G++R D + D G+
Sbjct: 219 YDYQNKYFTDDTQYLCP---SGLSAEVEREVQQLAVQAYRVLGCRGWARADVMLRAD-GK 274
Query: 907 VLIIEVNTVPGMT 919
++E+NT PGMT
Sbjct: 275 PFLLEMNTSPGMT 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,321,223
Number of Sequences: 539616
Number of extensions: 15234572
Number of successful extensions: 41616
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 38051
Number of HSP's gapped (non-prelim): 2554
length of query: 953
length of database: 191,569,459
effective HSP length: 127
effective length of query: 826
effective length of database: 123,038,227
effective search space: 101629575502
effective search space used: 101629575502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)