Query 002207
Match_columns 953
No_of_seqs 600 out of 4795
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 18:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14570 D-alanyl-alanine synt 100.0 3.9E-62 8.5E-67 551.9 39.4 344 77-461 2-352 (364)
2 PLN02735 carbamoyl-phosphate s 100.0 3.6E-58 7.7E-63 579.4 63.0 633 77-918 23-878 (1102)
3 PRK14570 D-alanyl-alanine synt 100.0 2.1E-59 4.5E-64 529.7 36.9 344 491-952 2-350 (364)
4 PRK14568 vanB D-alanine--D-lac 100.0 1.2E-58 2.6E-63 522.7 38.9 335 77-457 3-342 (343)
5 PRK01966 ddl D-alanyl-alanine 100.0 3.2E-58 7E-63 517.3 38.7 328 77-456 3-332 (333)
6 PRK14572 D-alanyl-alanine synt 100.0 6.1E-58 1.3E-62 517.5 38.5 341 78-457 2-347 (347)
7 PRK14573 bifunctional D-alanyl 100.0 4.9E-56 1.1E-60 552.9 39.8 339 74-460 448-791 (809)
8 PRK14568 vanB D-alanine--D-lac 100.0 9.5E-56 2.1E-60 499.2 34.5 337 490-950 2-342 (343)
9 TIGR01369 CPSaseII_lrg carbamo 100.0 4.2E-52 9.2E-57 526.8 65.0 629 77-917 6-842 (1050)
10 PRK05294 carB carbamoyl phosph 100.0 2.5E-52 5.5E-57 530.8 62.9 631 77-917 7-842 (1066)
11 PRK14569 D-alanyl-alanine synt 100.0 1.4E-54 3E-59 479.9 36.2 294 76-455 2-295 (296)
12 PRK01966 ddl D-alanyl-alanine 100.0 1.5E-54 3.2E-59 487.6 36.0 333 489-950 1-333 (333)
13 PRK14572 D-alanyl-alanine synt 100.0 1.7E-54 3.7E-59 489.4 36.3 343 492-950 2-347 (347)
14 PRK12815 carB carbamoyl phosph 100.0 3.2E-51 6.9E-56 518.9 63.1 627 77-918 7-841 (1068)
15 COG1181 DdlA D-alanine-D-alani 100.0 2.2E-53 4.8E-58 468.0 30.9 315 77-455 2-316 (317)
16 PRK14573 bifunctional D-alanyl 100.0 3.7E-53 7.9E-58 527.2 36.1 339 489-952 449-790 (809)
17 PRK14571 D-alanyl-alanine synt 100.0 3.5E-52 7.6E-57 462.2 36.2 298 78-458 1-298 (299)
18 PRK14569 D-alanyl-alanine synt 100.0 5.1E-51 1.1E-55 451.5 34.1 295 489-948 1-295 (296)
19 COG1181 DdlA D-alanine-D-alani 100.0 1.2E-50 2.6E-55 446.3 32.5 313 491-948 2-316 (317)
20 PRK14571 D-alanyl-alanine synt 100.0 5.8E-48 1.3E-52 428.4 35.4 298 492-951 1-298 (299)
21 TIGR01205 D_ala_D_alaTIGR D-al 100.0 4.9E-48 1.1E-52 432.3 35.0 313 79-455 1-315 (315)
22 PRK01372 ddl D-alanine--D-alan 100.0 1.4E-45 3E-50 410.4 36.8 300 77-458 4-303 (304)
23 TIGR01205 D_ala_D_alaTIGR D-al 100.0 1.2E-43 2.5E-48 397.0 35.8 312 493-948 1-315 (315)
24 PRK01372 ddl D-alanine--D-alan 100.0 2.2E-41 4.8E-46 376.7 36.0 302 489-951 2-303 (304)
25 PF07478 Dala_Dala_lig_C: D-al 100.0 1.4E-38 3.1E-43 331.7 21.1 202 212-453 1-203 (203)
26 PF07478 Dala_Dala_lig_C: D-al 100.0 8.2E-36 1.8E-40 311.1 21.8 200 687-946 2-203 (203)
27 KOG0370 Multifunctional pyrimi 100.0 3.7E-32 7.9E-37 312.9 30.5 626 77-915 377-1204(1435)
28 PRK10446 ribosomal protein S6 100.0 1E-31 2.2E-36 298.4 29.1 284 78-456 1-290 (300)
29 PRK08654 pyruvate carboxylase 100.0 5.2E-30 1.1E-34 301.5 33.0 352 78-504 3-366 (499)
30 PRK07178 pyruvate carboxylase 100.0 1E-29 2.2E-34 298.7 31.8 352 78-503 3-365 (472)
31 PRK05586 biotin carboxylase; V 100.0 2.5E-29 5.4E-34 294.2 31.7 351 78-502 3-365 (447)
32 TIGR00514 accC acetyl-CoA carb 100.0 4.6E-29 1E-33 292.2 33.0 353 78-504 3-367 (449)
33 PLN02735 carbamoyl-phosphate s 100.0 5.7E-29 1.2E-33 314.9 31.5 309 75-451 572-898 (1102)
34 PRK08463 acetyl-CoA carboxylas 100.0 2.2E-28 4.8E-33 287.7 33.4 356 78-504 3-367 (478)
35 PRK12833 acetyl-CoA carboxylas 100.0 2.9E-28 6.2E-33 286.2 34.1 353 78-504 6-370 (467)
36 PRK10446 ribosomal protein S6 100.0 1.1E-28 2.4E-33 274.1 28.0 232 634-952 57-294 (300)
37 PRK08591 acetyl-CoA carboxylas 100.0 5E-28 1.1E-32 284.0 34.0 345 78-496 3-359 (451)
38 PRK08462 biotin carboxylase; V 100.0 1.2E-27 2.6E-32 280.2 34.0 342 78-494 5-357 (445)
39 PRK06524 biotin carboxylase-li 100.0 4.7E-28 1E-32 276.9 27.0 226 626-922 98-330 (493)
40 PRK06524 biotin carboxylase-li 100.0 4.8E-28 1E-32 276.8 25.7 239 163-452 106-348 (493)
41 PLN02948 phosphoribosylaminoim 100.0 1.7E-27 3.7E-32 283.8 31.4 294 77-458 22-316 (577)
42 TIGR01235 pyruv_carbox pyruvat 100.0 3.3E-27 7.2E-32 296.8 34.2 342 98-504 11-373 (1143)
43 COG0439 AccC Biotin carboxylas 100.0 7E-27 1.5E-31 266.4 32.5 366 78-515 3-378 (449)
44 PRK13789 phosphoribosylamine-- 100.0 7.2E-27 1.6E-31 270.2 29.4 243 162-459 67-323 (426)
45 COG0458 CarB Carbamoylphosphat 100.0 7.9E-27 1.7E-31 256.6 26.6 302 76-449 4-310 (400)
46 PRK12999 pyruvate carboxylase; 100.0 3.2E-26 7E-31 289.5 34.1 354 77-504 5-377 (1146)
47 PRK05294 carB carbamoyl phosph 100.0 2E-26 4.3E-31 294.1 31.7 306 76-452 553-864 (1066)
48 TIGR01369 CPSaseII_lrg carbamo 99.9 3.5E-26 7.5E-31 290.9 32.2 304 76-451 553-863 (1050)
49 PRK06111 acetyl-CoA carboxylas 99.9 2.1E-25 4.5E-30 261.9 30.7 307 78-458 3-319 (450)
50 TIGR02712 urea_carbox urea car 99.9 7E-25 1.5E-29 279.0 36.8 343 78-493 2-357 (1201)
51 PRK06019 phosphoribosylaminoim 99.9 3.3E-25 7.1E-30 253.4 30.5 279 78-444 3-282 (372)
52 TIGR01161 purK phosphoribosyla 99.9 3.7E-25 7.9E-30 251.5 29.8 289 79-457 1-290 (352)
53 TIGR01142 purT phosphoribosylg 99.9 5.7E-25 1.2E-29 252.6 30.5 294 79-457 1-297 (380)
54 COG4770 Acetyl/propionyl-CoA c 99.9 5.6E-25 1.2E-29 246.2 28.4 355 98-515 14-378 (645)
55 PRK12815 carB carbamoyl phosph 99.9 6.7E-25 1.5E-29 279.2 32.5 301 76-451 554-861 (1068)
56 PRK13789 phosphoribosylamine-- 99.9 1.3E-24 2.8E-29 251.6 27.0 245 633-949 67-320 (426)
57 TIGR00877 purD phosphoribosyla 99.9 2.2E-24 4.8E-29 251.2 26.8 303 78-458 1-317 (423)
58 PLN02948 phosphoribosylaminoim 99.9 9.6E-24 2.1E-28 251.8 32.5 211 635-921 84-295 (577)
59 KOG0238 3-Methylcrotonyl-CoA c 99.9 2.4E-24 5.1E-29 236.9 24.9 355 98-515 10-375 (670)
60 PRK00885 phosphoribosylamine-- 99.9 3.4E-24 7.3E-29 249.3 27.8 244 162-459 61-316 (420)
61 PLN02257 phosphoribosylamine-- 99.9 3.8E-24 8.1E-29 247.8 27.8 242 162-459 61-318 (434)
62 PLN02257 phosphoribosylamine-- 99.9 4.7E-24 1E-28 247.0 28.3 246 633-949 61-315 (434)
63 PRK09288 purT phosphoribosylgl 99.9 4E-23 8.7E-28 238.5 31.2 299 74-457 9-310 (395)
64 TIGR02144 LysX_arch Lysine bio 99.9 3.6E-23 7.9E-28 227.6 27.2 261 98-452 12-275 (280)
65 PF01820 Dala_Dala_lig_N: D-al 99.9 2E-25 4.4E-30 212.2 7.3 117 78-195 1-117 (117)
66 PRK05586 biotin carboxylase; V 99.9 3.2E-23 7E-28 242.8 27.2 222 632-919 72-296 (447)
67 TIGR00514 accC acetyl-CoA carb 99.9 4.5E-23 9.8E-28 241.7 28.1 228 626-919 65-296 (449)
68 PRK13790 phosphoribosylamine-- 99.9 2.3E-23 5.1E-28 238.4 24.9 245 162-458 26-277 (379)
69 TIGR00768 rimK_fam alpha-L-glu 99.9 5.9E-23 1.3E-27 225.2 26.7 271 79-449 1-274 (277)
70 PRK07206 hypothetical protein; 99.9 1.3E-22 2.7E-27 236.0 30.7 299 78-458 3-316 (416)
71 PRK12767 carbamoyl phosphate s 99.9 1.1E-22 2.5E-27 228.7 27.5 288 78-452 2-292 (326)
72 PRK13790 phosphoribosylamine-- 99.9 7.1E-23 1.5E-27 234.4 25.4 245 632-949 25-275 (379)
73 PRK08462 biotin carboxylase; V 99.9 1.1E-22 2.4E-27 238.4 27.3 226 627-919 68-298 (445)
74 PRK08654 pyruvate carboxylase 99.9 1.8E-22 4E-27 237.7 27.6 222 633-919 73-295 (499)
75 PRK12833 acetyl-CoA carboxylas 99.9 2.8E-22 6E-27 235.6 28.9 222 632-919 75-299 (467)
76 PRK08591 acetyl-CoA carboxylas 99.9 2.5E-22 5.4E-27 235.9 27.8 222 632-919 72-296 (451)
77 PRK06395 phosphoribosylamine-- 99.9 2.3E-22 4.9E-27 233.5 26.1 303 77-458 2-320 (435)
78 PRK07178 pyruvate carboxylase 99.9 2.4E-22 5.2E-27 236.5 26.6 229 626-919 64-295 (472)
79 PRK08463 acetyl-CoA carboxylas 99.9 4E-22 8.7E-27 234.8 28.1 222 633-919 72-296 (478)
80 PRK05784 phosphoribosylamine-- 99.9 1.6E-21 3.5E-26 228.1 30.3 239 162-458 68-337 (486)
81 COG1038 PycA Pyruvate carboxyl 99.9 2.5E-21 5.4E-26 222.0 29.6 355 78-504 8-379 (1149)
82 COG0458 CarB Carbamoylphosphat 99.9 9.3E-22 2E-26 216.7 24.9 244 631-947 67-314 (400)
83 PRK06111 acetyl-CoA carboxylas 99.9 1.4E-21 3.1E-26 229.5 27.9 224 632-919 72-296 (450)
84 PF01820 Dala_Dala_lig_N: D-al 99.9 8.2E-24 1.8E-28 201.2 7.1 117 492-666 1-117 (117)
85 PRK00885 phosphoribosylamine-- 99.9 1.4E-21 3E-26 227.4 26.8 224 633-921 61-293 (420)
86 TIGR01161 purK phosphoribosyla 99.9 2.5E-21 5.5E-26 220.1 26.4 192 652-919 75-268 (352)
87 TIGR01142 purT phosphoribosylg 99.9 4.7E-21 1E-25 220.2 27.1 216 633-921 61-277 (380)
88 PRK02186 argininosuccinate lya 99.9 4.1E-21 8.8E-26 241.7 28.2 300 78-458 3-305 (887)
89 TIGR00877 purD phosphoribosyla 99.9 5.9E-21 1.3E-25 222.5 25.8 227 632-921 62-295 (423)
90 PRK06019 phosphoribosylaminoim 99.9 1.1E-20 2.5E-25 216.1 26.5 183 662-919 86-270 (372)
91 TIGR01235 pyruv_carbox pyruvat 99.9 1.9E-20 4E-25 236.2 29.4 231 625-919 64-296 (1143)
92 TIGR00768 rimK_fam alpha-L-glu 99.9 1E-20 2.3E-25 207.4 23.1 214 634-921 48-261 (277)
93 TIGR02144 LysX_arch Lysine bio 99.9 2.6E-20 5.7E-25 205.0 24.6 213 634-921 47-259 (280)
94 TIGR02712 urea_carbox urea car 99.9 6E-20 1.3E-24 234.1 30.6 224 632-919 71-295 (1201)
95 PRK09288 purT phosphoribosylgl 99.9 1.9E-19 4.2E-24 207.9 31.1 214 633-920 74-289 (395)
96 PF02786 CPSase_L_D2: Carbamoy 99.9 1.6E-20 3.4E-25 196.8 19.2 199 205-458 1-206 (211)
97 PRK06849 hypothetical protein; 99.9 2.9E-20 6.2E-25 214.3 22.1 271 74-426 1-277 (389)
98 PRK05784 phosphoribosylamine-- 99.8 1.9E-19 4.2E-24 210.7 26.9 249 632-950 67-336 (486)
99 PRK06395 phosphoribosylamine-- 99.8 2.7E-19 5.8E-24 207.9 26.7 245 632-949 63-318 (435)
100 PRK12999 pyruvate carboxylase; 99.8 4.5E-19 9.9E-24 224.9 29.4 250 625-949 68-321 (1146)
101 PRK07206 hypothetical protein; 99.8 3.8E-19 8.2E-24 206.9 26.4 221 632-926 68-298 (416)
102 KOG0369 Pyruvate carboxylase [ 99.8 6.5E-19 1.4E-23 198.2 26.5 354 78-503 34-401 (1176)
103 PRK12767 carbamoyl phosphate s 99.8 5.4E-19 1.2E-23 198.9 24.1 202 632-918 67-272 (326)
104 COG0439 AccC Biotin carboxylas 99.8 6.4E-19 1.4E-23 201.4 23.7 242 634-949 74-317 (449)
105 PF13535 ATP-grasp_4: ATP-gras 99.8 3E-19 6.5E-24 183.3 16.2 177 202-426 1-180 (184)
106 PF02786 CPSase_L_D2: Carbamoy 99.8 1.2E-18 2.6E-23 182.7 20.7 204 676-949 1-204 (211)
107 PRK02186 argininosuccinate lya 99.8 1.4E-18 3.1E-23 218.8 25.2 219 651-949 84-303 (887)
108 PRK13278 purP 5-formaminoimida 99.8 1.1E-17 2.4E-22 187.6 28.4 318 72-458 13-350 (358)
109 PF13535 ATP-grasp_4: ATP-gras 99.8 6.7E-19 1.4E-23 180.7 17.1 180 673-918 1-181 (184)
110 PF15632 ATPgrasp_Ter: ATP-gra 99.8 1.2E-17 2.6E-22 184.6 25.0 222 161-449 64-300 (329)
111 COG0026 PurK Phosphoribosylami 99.8 7.5E-17 1.6E-21 176.1 26.6 269 78-430 2-272 (375)
112 KOG0238 3-Methylcrotonyl-CoA c 99.8 5.4E-17 1.2E-21 179.4 22.6 234 644-949 79-313 (670)
113 PF15632 ATPgrasp_Ter: ATP-gra 99.8 6E-17 1.3E-21 179.1 22.6 224 632-942 64-301 (329)
114 COG0189 RimK Glutathione synth 99.8 1.6E-16 3.4E-21 176.4 25.8 237 163-458 78-317 (318)
115 COG4770 Acetyl/propionyl-CoA c 99.8 3.9E-17 8.5E-22 183.7 21.0 234 644-949 83-317 (645)
116 COG0151 PurD Phosphoribosylami 99.7 2.9E-16 6.4E-21 173.8 25.6 223 161-430 61-294 (428)
117 COG0027 PurT Formate-dependent 99.7 9.2E-16 2E-20 161.6 20.8 218 631-920 72-289 (394)
118 COG0027 PurT Formate-dependent 99.7 2.3E-15 4.9E-20 158.6 23.6 272 77-428 12-288 (394)
119 KOG0368 Acetyl-CoA carboxylase 99.7 6.2E-16 1.4E-20 186.1 21.6 301 162-516 136-472 (2196)
120 TIGR01435 glu_cys_lig_rel glut 99.7 4.6E-16 1E-20 187.3 19.8 199 667-921 466-717 (737)
121 COG1038 PycA Pyruvate carboxyl 99.7 1.5E-15 3.2E-20 175.3 22.9 232 621-916 66-299 (1149)
122 PRK06849 hypothetical protein; 99.7 6.9E-16 1.5E-20 178.0 19.5 203 632-918 74-278 (389)
123 PF08443 RimK: RimK-like ATP-g 99.7 2.3E-16 5E-21 163.7 14.0 184 203-448 1-186 (190)
124 PF08443 RimK: RimK-like ATP-g 99.7 3.6E-16 7.8E-21 162.2 15.3 174 674-921 1-174 (190)
125 PF02655 ATP-grasp_3: ATP-gras 99.7 1.1E-16 2.4E-21 161.5 10.6 158 203-426 1-159 (161)
126 PRK13278 purP 5-formaminoimida 99.7 3.8E-15 8.2E-20 167.3 23.4 241 639-950 88-349 (358)
127 PF02222 ATP-grasp: ATP-grasp 99.7 1.6E-15 3.5E-20 153.6 18.5 163 687-920 1-165 (172)
128 PRK02471 bifunctional glutamat 99.7 2.6E-15 5.6E-20 183.9 23.5 211 192-434 474-734 (752)
129 PRK02471 bifunctional glutamat 99.7 1.3E-15 2.9E-20 186.3 20.0 198 663-921 474-731 (752)
130 TIGR01435 glu_cys_lig_rel glut 99.7 1.5E-15 3.2E-20 183.1 19.7 210 196-435 466-721 (737)
131 COG0151 PurD Phosphoribosylami 99.7 1.1E-14 2.4E-19 161.4 23.0 225 633-919 62-292 (428)
132 PRK13277 5-formaminoimidazole- 99.6 1.7E-14 3.8E-19 159.4 23.6 296 76-448 16-337 (366)
133 TIGR03103 trio_acet_GNAT GNAT- 99.6 2.7E-15 5.8E-20 178.9 18.6 194 195-430 287-527 (547)
134 KOG0370 Multifunctional pyrimi 99.6 4.7E-15 1E-19 172.9 17.9 303 79-452 920-1228(1435)
135 PF02655 ATP-grasp_3: ATP-gras 99.6 8.3E-16 1.8E-20 155.2 10.4 157 674-917 1-159 (161)
136 TIGR02291 rimK_rel_E_lig alpha 99.6 2.7E-14 5.9E-19 157.1 22.6 217 173-444 11-284 (317)
137 PF02222 ATP-grasp: ATP-grasp 99.6 7.1E-15 1.5E-19 148.9 15.8 163 213-429 1-165 (172)
138 TIGR03103 trio_acet_GNAT GNAT- 99.6 1.4E-14 3E-19 172.8 20.5 201 667-921 288-527 (547)
139 PLN02941 inositol-tetrakisphos 99.6 9.2E-14 2E-18 154.0 25.3 251 100-430 40-309 (328)
140 PF01071 GARS_A: Phosphoribosy 99.6 7.5E-15 1.6E-19 150.2 14.9 177 205-426 2-190 (194)
141 PRK14016 cyanophycin synthetas 99.6 2.5E-14 5.4E-19 175.9 22.4 109 651-795 191-300 (727)
142 KOG0369 Pyruvate carboxylase [ 99.6 5E-14 1.1E-18 159.4 22.4 250 622-937 93-354 (1176)
143 PRK14016 cyanophycin synthetas 99.6 2.9E-14 6.3E-19 175.4 22.3 131 161-308 171-306 (727)
144 COG0189 RimK Glutathione synth 99.6 5.8E-14 1.3E-18 156.0 22.4 214 634-920 78-293 (318)
145 TIGR02068 cya_phycin_syn cyano 99.6 2.4E-14 5.2E-19 179.3 20.6 102 195-308 203-305 (864)
146 COG0026 PurK Phosphoribosylami 99.6 1.6E-13 3.6E-18 150.2 23.8 194 651-920 77-271 (375)
147 TIGR02068 cya_phycin_syn cyano 99.6 5.8E-14 1.3E-18 176.0 21.8 96 666-795 203-299 (864)
148 TIGR01380 glut_syn glutathione 99.6 5.4E-13 1.2E-17 149.1 27.1 297 78-453 1-309 (312)
149 PF01071 GARS_A: Phosphoribosy 99.6 7.9E-14 1.7E-18 142.7 17.8 182 676-917 2-190 (194)
150 PLN02941 inositol-tetrakisphos 99.6 2.2E-13 4.8E-18 151.0 22.3 237 634-948 66-324 (328)
151 TIGR02291 rimK_rel_E_lig alpha 99.6 4.4E-13 9.5E-18 147.6 22.9 234 644-938 11-285 (317)
152 PRK05246 glutathione synthetas 99.5 2.7E-12 5.8E-17 143.9 27.9 294 78-453 2-310 (316)
153 PRK12458 glutathione synthetas 99.5 1.6E-12 3.5E-17 146.5 25.2 228 163-458 79-327 (338)
154 COG2232 Predicted ATP-dependen 99.5 4.9E-13 1.1E-17 142.2 18.6 279 77-447 11-292 (389)
155 COG1821 Predicted ATP-utilizin 99.5 2.3E-13 4.9E-18 140.0 14.2 185 162-426 72-257 (307)
156 PRK13277 5-formaminoimidazole- 99.5 7.9E-13 1.7E-17 146.3 19.3 232 639-942 88-339 (366)
157 COG1821 Predicted ATP-utilizin 99.5 8.9E-13 1.9E-17 135.7 16.0 216 625-949 64-280 (307)
158 KOG0368 Acetyl-CoA carboxylase 99.4 4E-12 8.6E-17 154.0 18.6 223 633-917 136-378 (2196)
159 KOG0237 Glycinamide ribonucleo 99.4 7.7E-11 1.7E-15 133.1 25.5 226 162-431 67-301 (788)
160 COG3919 Predicted ATP-grasp en 99.2 1.1E-10 2.5E-15 122.3 15.2 211 639-919 75-291 (415)
161 PRK12458 glutathione synthetas 99.2 1.1E-09 2.4E-14 123.7 24.4 226 634-947 79-324 (338)
162 KOG0237 Glycinamide ribonucleo 99.2 5.8E-10 1.3E-14 126.2 21.0 212 651-921 83-300 (788)
163 COG3919 Predicted ATP-grasp en 99.2 7.9E-11 1.7E-15 123.5 11.6 207 181-447 92-305 (415)
164 TIGR01380 glut_syn glutathione 99.2 1.2E-09 2.7E-14 122.2 21.3 201 634-915 78-284 (312)
165 COG2232 Predicted ATP-dependen 99.2 1.7E-10 3.7E-15 123.2 13.5 196 631-919 80-277 (389)
166 PRK05246 glutathione synthetas 99.2 5.5E-09 1.2E-13 117.3 25.1 197 635-916 80-287 (316)
167 TIGR01016 sucCoAbeta succinyl- 99.1 1.1E-09 2.4E-14 126.2 15.9 186 205-422 4-215 (386)
168 TIGR01016 sucCoAbeta succinyl- 98.8 5.4E-08 1.2E-12 112.3 16.6 182 676-912 4-214 (386)
169 PF14397 ATPgrasp_ST: Sugar-tr 98.7 9.6E-07 2.1E-11 97.4 19.5 218 666-919 16-263 (285)
170 PF14397 ATPgrasp_ST: Sugar-tr 98.7 2.4E-06 5.3E-11 94.3 21.7 225 195-454 16-282 (285)
171 COG1759 5-formaminoimidazole-4 98.7 2.2E-06 4.8E-11 91.9 20.3 309 77-458 18-353 (361)
172 PF05770 Ins134_P3_kin: Inosit 98.6 1.3E-06 2.7E-11 96.3 16.2 223 634-922 52-295 (307)
173 PRK00696 sucC succinyl-CoA syn 98.6 2E-06 4.3E-11 99.4 18.6 99 204-311 3-117 (388)
174 PF05770 Ins134_P3_kin: Inosit 98.5 2.9E-06 6.3E-11 93.4 17.9 222 163-430 52-294 (307)
175 PF14398 ATPgrasp_YheCD: YheC/ 98.5 6.2E-06 1.3E-10 90.0 20.4 205 655-922 3-239 (262)
176 PF14398 ATPgrasp_YheCD: YheC/ 98.5 2.8E-06 6.1E-11 92.7 15.9 194 184-427 3-235 (262)
177 PF02955 GSH-S_ATP: Prokaryoti 98.4 3.8E-06 8.3E-11 85.3 12.3 145 694-914 12-160 (173)
178 PF02955 GSH-S_ATP: Prokaryoti 98.3 4.2E-06 9.1E-11 85.0 10.9 136 220-392 12-151 (173)
179 PRK00696 sucC succinyl-CoA syn 98.0 0.00031 6.7E-09 81.4 18.8 108 676-828 4-116 (388)
180 PF14305 ATPgrasp_TupA: TupA-l 97.9 0.00035 7.7E-09 75.2 16.3 202 671-921 15-223 (239)
181 PF08442 ATP-grasp_2: ATP-gras 97.9 0.0001 2.2E-09 77.0 11.3 98 206-311 4-116 (202)
182 PRK14046 malate--CoA ligase su 97.8 0.00071 1.5E-08 78.1 18.0 97 206-311 5-117 (392)
183 PF03133 TTL: Tubulin-tyrosine 97.7 0.00022 4.7E-09 79.3 11.9 32 890-922 235-266 (292)
184 PF14305 ATPgrasp_TupA: TupA-l 97.7 0.001 2.2E-08 71.6 16.5 191 200-435 15-228 (239)
185 COG0045 SucC Succinyl-CoA synt 97.6 0.0017 3.7E-08 72.5 16.3 97 206-311 5-115 (387)
186 PF03133 TTL: Tubulin-tyrosine 97.6 0.00056 1.2E-08 76.1 12.2 42 251-297 67-108 (292)
187 PLN00124 succinyl-CoA ligase [ 97.6 0.0021 4.5E-08 74.5 17.0 100 204-310 30-151 (422)
188 KOG3895 Synaptic vesicle prote 97.5 0.0016 3.5E-08 70.8 13.7 211 634-921 155-374 (488)
189 PF02750 Synapsin_C: Synapsin, 97.3 0.0049 1.1E-07 62.8 13.5 169 668-914 3-176 (203)
190 COG1759 5-formaminoimidazole-4 97.1 0.028 6.2E-07 61.2 17.6 210 641-914 90-313 (361)
191 PRK14046 malate--CoA ligase su 97.0 0.016 3.4E-07 67.1 15.9 106 677-828 5-116 (392)
192 KOG3895 Synaptic vesicle prote 96.9 0.0078 1.7E-07 65.6 12.0 200 162-423 154-365 (488)
193 PLN02235 ATP citrate (pro-S)-l 96.9 0.03 6.5E-07 64.4 17.3 101 205-311 7-126 (423)
194 PF13549 ATP-grasp_5: ATP-gras 96.9 0.006 1.3E-07 64.8 10.9 104 676-828 11-121 (222)
195 COG0045 SucC Succinyl-CoA synt 96.9 0.022 4.8E-07 63.9 15.3 91 678-791 6-100 (387)
196 PF02750 Synapsin_C: Synapsin, 96.9 0.053 1.2E-06 55.4 16.6 166 196-423 2-176 (203)
197 PLN00124 succinyl-CoA ligase [ 96.4 0.12 2.6E-06 60.2 17.7 63 676-750 31-106 (422)
198 PF13549 ATP-grasp_5: ATP-gras 96.4 0.011 2.4E-07 62.9 8.3 99 203-310 9-121 (222)
199 PLN02235 ATP citrate (pro-S)-l 96.1 0.17 3.7E-06 58.4 16.3 93 678-793 9-114 (423)
200 PF00289 CPSase_L_chain: Carba 96.0 0.011 2.3E-07 55.8 5.5 104 78-200 3-110 (110)
201 PF08442 ATP-grasp_2: ATP-gras 95.8 0.033 7.1E-07 58.4 8.6 107 677-828 4-115 (202)
202 KOG2156 Tubulin-tyrosine ligas 94.6 0.076 1.6E-06 61.1 7.0 71 870-949 439-525 (662)
203 PF14243 DUF4343: Domain of un 93.8 0.49 1.1E-05 46.1 10.2 54 251-308 3-56 (130)
204 KOG2156 Tubulin-tyrosine ligas 93.4 0.22 4.7E-06 57.5 7.8 75 363-460 439-529 (662)
205 KOG1057 Arp2/3 complex-interac 91.9 1.9 4.1E-05 52.2 13.0 214 163-423 90-321 (1018)
206 PF14403 CP_ATPgrasp_2: Circul 91.7 1.1 2.4E-05 52.4 10.9 101 187-298 266-385 (445)
207 PF14243 DUF4343: Domain of un 89.5 4.1 8.8E-05 39.7 11.0 22 893-915 94-115 (130)
208 KOG2157 Predicted tubulin-tyro 88.6 2.7 5.8E-05 49.8 10.6 54 723-793 199-252 (497)
209 KOG2157 Predicted tubulin-tyro 87.2 3.1 6.8E-05 49.3 10.1 49 249-297 199-250 (497)
210 TIGR02049 gshA_ferroox glutama 86.8 17 0.00036 41.2 14.8 67 252-326 260-333 (403)
211 PF02844 GARS_N: Phosphoribosy 85.1 6.6 0.00014 36.4 9.0 40 161-202 60-99 (100)
212 KOG1057 Arp2/3 complex-interac 82.7 8.5 0.00018 47.0 10.8 74 651-733 106-188 (1018)
213 PF14403 CP_ATPgrasp_2: Circul 81.2 5 0.00011 47.1 8.2 107 660-793 268-386 (445)
214 PRK05849 hypothetical protein; 80.5 1.7E+02 0.0037 37.2 21.7 192 675-915 9-215 (783)
215 PF06973 DUF1297: Domain of un 71.1 69 0.0015 33.0 12.0 85 357-458 85-180 (188)
216 TIGR00853 pts-lac PTS system, 68.6 15 0.00032 33.8 6.3 81 77-198 3-84 (95)
217 COG2910 Putative NADH-flavin r 65.2 26 0.00057 36.1 7.7 34 78-119 1-34 (211)
218 PF13380 CoA_binding_2: CoA bi 64.1 31 0.00068 32.7 7.8 107 79-198 2-111 (116)
219 PF06849 DUF1246: Protein of u 60.8 17 0.00036 34.9 5.1 115 97-224 8-123 (124)
220 PRK08057 cobalt-precorrin-6x r 59.8 21 0.00046 38.7 6.6 33 78-119 3-35 (248)
221 TIGR00715 precor6x_red precorr 59.3 20 0.00044 39.1 6.3 34 78-120 1-34 (256)
222 PF11379 DUF3182: Protein of u 54.3 43 0.00092 37.7 7.7 52 723-793 136-187 (355)
223 PF02571 CbiJ: Precorrin-6x re 52.4 31 0.00068 37.5 6.3 125 78-280 1-127 (249)
224 PF00289 CPSase_L_chain: Carba 50.5 19 0.00042 33.9 3.8 48 622-670 61-109 (110)
225 PF07065 D123: D123; InterPro 49.9 60 0.0013 36.3 8.2 49 871-920 194-243 (299)
226 PF08886 GshA: Glutamate-cyste 49.8 50 0.0011 37.7 7.4 46 252-297 263-315 (404)
227 cd05564 PTS_IIB_chitobiose_lic 48.8 52 0.0011 30.1 6.3 83 79-202 1-84 (96)
228 KOG1447 GTP-specific succinyl- 48.2 81 0.0018 34.2 8.3 98 206-311 24-143 (412)
229 COG1748 LYS9 Saccharopine dehy 46.9 46 0.001 38.6 6.8 121 78-224 2-123 (389)
230 cd05565 PTS_IIB_lactose PTS_II 46.0 1.3E+02 0.0029 27.8 8.5 83 78-201 1-84 (99)
231 PRK05849 hypothetical protein; 44.2 8E+02 0.017 31.4 19.7 189 203-424 8-215 (783)
232 KOG2452 Formyltetrahydrofolate 43.4 26 0.00057 40.3 4.1 37 78-123 1-39 (881)
233 COG4002 Predicted phosphotrans 41.8 40 0.00086 35.1 4.7 42 76-117 136-183 (256)
234 PF02525 Flavodoxin_2: Flavodo 40.3 31 0.00067 35.8 3.9 42 78-119 1-43 (199)
235 PF00743 FMO-like: Flavin-bind 39.6 21 0.00046 43.3 2.8 38 78-124 2-41 (531)
236 COG1004 Ugd Predicted UDP-gluc 39.0 22 0.00048 40.9 2.7 34 78-120 1-34 (414)
237 COG1832 Predicted CoA-binding 39.0 43 0.00092 32.9 4.2 39 78-121 17-55 (140)
238 CHL00194 ycf39 Ycf39; Provisio 37.4 1.2E+02 0.0026 33.8 8.4 31 78-116 1-31 (317)
239 PRK09590 celB cellobiose phosp 37.0 90 0.0019 29.2 6.0 84 78-201 2-87 (104)
240 PF11379 DUF3182: Protein of u 36.5 70 0.0015 36.0 5.9 62 248-309 135-197 (355)
241 PRK06464 phosphoenolpyruvate s 36.0 6.4E+02 0.014 32.4 15.2 49 361-428 288-337 (795)
242 smart00878 Biotin_carb_C Bioti 35.8 20 0.00043 33.7 1.4 43 473-515 1-43 (107)
243 COG2099 CobK Precorrin-6x redu 35.5 4.1E+02 0.0089 29.0 11.3 78 170-280 47-126 (257)
244 PF06849 DUF1246: Protein of u 34.5 37 0.00079 32.6 2.9 55 640-698 69-123 (124)
245 PRK00170 azoreductase; Reviewe 34.0 60 0.0013 33.6 4.9 41 78-118 2-44 (201)
246 PF03358 FMN_red: NADPH-depend 33.9 60 0.0013 31.8 4.7 40 78-118 1-40 (152)
247 PLN02172 flavin-containing mon 32.9 41 0.00088 40.1 3.8 42 74-124 7-50 (461)
248 KOG2799 Succinyl-CoA synthetas 31.7 81 0.0018 35.7 5.4 64 676-750 26-100 (434)
249 TIGR02049 gshA_ferroox glutama 31.7 2.2E+02 0.0047 32.7 8.7 55 726-793 260-314 (403)
250 PRK06847 hypothetical protein; 31.5 45 0.00098 38.0 3.8 34 74-116 1-34 (375)
251 PRK08163 salicylate hydroxylas 31.4 47 0.001 38.2 3.9 34 74-116 1-34 (396)
252 PF02514 CobN-Mg_chel: CobN/Ma 29.8 93 0.002 41.2 6.5 92 76-194 70-164 (1098)
253 COG0569 TrkA K+ transport syst 28.5 47 0.001 35.5 3.0 33 78-119 1-33 (225)
254 PRK02264 N(5),N(10)-methenylte 28.1 1.1E+02 0.0023 34.3 5.6 83 415-502 134-234 (317)
255 PF02785 Biotin_carb_C: Biotin 28.0 30 0.00065 32.5 1.2 43 473-515 1-43 (107)
256 COG4635 HemG Flavodoxin [Energ 27.0 86 0.0019 31.6 4.2 36 78-117 1-37 (175)
257 cd00545 MCH Methenyltetrahydro 26.6 94 0.002 34.6 4.8 82 415-502 133-233 (312)
258 PF06973 DUF1297: Domain of un 26.6 3.4E+02 0.0073 28.1 8.4 50 869-919 90-146 (188)
259 PRK06079 enoyl-(acyl carrier p 25.9 86 0.0019 33.6 4.5 33 79-116 8-40 (252)
260 KOG2799 Succinyl-CoA synthetas 25.8 1.5E+02 0.0032 33.7 6.2 75 200-282 21-106 (434)
261 PF13478 XdhC_C: XdhC Rossmann 25.7 1.6E+02 0.0035 28.8 6.0 85 81-195 1-86 (136)
262 TIGR03120 one_C_mch methenylte 25.7 97 0.0021 34.5 4.7 82 415-502 133-233 (312)
263 TIGR01737 FGAM_synth_I phospho 25.5 71 0.0015 34.1 3.7 30 78-115 1-31 (227)
264 PRK09739 hypothetical protein; 25.5 1.2E+02 0.0026 31.5 5.3 42 77-119 3-44 (199)
265 PRK07819 3-hydroxybutyryl-CoA 25.5 64 0.0014 35.8 3.5 34 78-120 6-39 (286)
266 PRK05878 pyruvate phosphate di 25.1 7.4E+02 0.016 30.2 12.5 219 661-915 10-297 (530)
267 PF10727 Rossmann-like: Rossma 24.8 54 0.0012 31.8 2.3 34 74-116 7-40 (127)
268 PRK01215 competence damage-ind 23.9 4E+02 0.0086 29.3 9.2 90 77-196 3-96 (264)
269 PLN03209 translocon at the inn 23.6 1.7E+02 0.0037 35.8 6.7 32 79-117 81-112 (576)
270 PRK00549 competence damage-ind 23.6 4.1E+02 0.0089 31.2 9.8 89 78-196 1-93 (414)
271 PLN02657 3,8-divinyl protochlo 23.5 1.3E+02 0.0028 34.9 5.6 36 74-117 57-92 (390)
272 PRK13609 diacylglycerol glucos 23.5 1E+02 0.0022 35.2 4.8 38 74-114 1-38 (380)
273 PRK09362 phosphoribosylaminoim 23.2 1.4E+02 0.0031 32.2 5.4 47 362-421 143-194 (238)
274 KOG4022 Dihydropteridine reduc 22.9 2.3E+02 0.0049 28.8 6.2 104 81-202 6-110 (236)
275 PRK10310 PTS system galactitol 22.7 1.5E+02 0.0032 27.1 4.7 34 77-114 2-36 (94)
276 PLN02695 GDP-D-mannose-3',5'-e 22.4 97 0.0021 35.6 4.3 35 74-117 18-53 (370)
277 COG0754 Gsp Glutathionylspermi 21.8 1.5E+02 0.0033 33.7 5.4 75 652-744 243-317 (387)
278 PRK10569 NAD(P)H-dependent FMN 21.6 1.6E+02 0.0034 30.6 5.3 40 78-118 1-40 (191)
279 PLN00016 RNA-binding protein; 21.3 1.4E+02 0.0031 34.2 5.5 34 78-118 53-89 (378)
280 PRK07208 hypothetical protein; 21.0 85 0.0018 37.3 3.6 35 74-117 1-35 (479)
281 PRK06753 hypothetical protein; 21.0 84 0.0018 35.8 3.4 30 78-116 1-30 (373)
282 COG2179 Predicted hydrolase of 20.9 3.5E+02 0.0075 27.7 7.1 96 623-738 50-147 (175)
283 COG2984 ABC-type uncharacteriz 20.8 1.2E+03 0.025 26.5 11.8 94 74-200 156-250 (322)
284 PF02737 3HCDH_N: 3-hydroxyacy 20.6 60 0.0013 33.3 1.9 32 79-119 1-32 (180)
No 1
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=3.9e-62 Score=551.89 Aligned_cols=344 Identities=26% Similarity=0.371 Sum_probs=275.1
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHh-hcCCCEEEEEEEecC-CceeeecccccccCCCCCccccccccccccCcch
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHI-QGDDLLVRCYYIDRN-LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLS 154 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL-~~~g~~V~~i~id~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (953)
++||+|||||.|+||||||.||++|+++| ++.+|+|++++|+++ |.|+..+...........-........... .
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 78 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLLDSVPDPPKLIKRDVLPIVSLIPGC---G 78 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEecCccccccccccccccccccccccc---c
Confidence 56999999999999999999999999999 689999999999999 999865321100000000000000000000 0
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCcc--c
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV--N 232 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~--~ 232 (953)
.+......++|+|||++||.+||||++|++||.+||||+||++.++++||||..+|++|+++|||||++..+...+. .
T Consensus 79 ~~~~~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 79 IFVNNKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred ccccCcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEeccccccc
Confidence 00001112699999999999999999999999999999999999999999999999999999999999988865321 1
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
..++...+. ..++||+||||+++|||+||++|++.+|+..++..++ .+++.+|||+||+| +|++|+|+++
T Consensus 159 ~~~~~~~~~----~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~--~~~~~vlVEefI~G-rEi~v~Vlg~--- 228 (364)
T PRK14570 159 KEGIKKDIK----EVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAF--KYDLTVVIEKFIEA-REIECSVIGN--- 228 (364)
T ss_pred hHHHHHHHH----HhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHH--hCCCCEEEECCcCC-EEEEEEEECC---
Confidence 111111111 1368899999999999999999999999887777665 36788999999997 9999999952
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccC--CCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~--~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
..+.+++++|+... ...||||++||.. +....+.+|+++++++.++|+++|.+++++|||+|++|||
T Consensus 229 --~~~~v~~~~Ei~~~---------~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvD 297 (364)
T PRK14570 229 --EQIKIFTPGEIVVQ---------DFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARID 297 (364)
T ss_pred --CCceEeeeEEEEeC---------CCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 23567888887642 3469999999963 3323577899999999999999999999999999999999
Q ss_pred eeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCC
Q 002207 391 GWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 461 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~ 461 (953)
|++ ++ +|++||+||||+||||++|+||++|+++|++|.+|+++||+.|++|+..
T Consensus 298 f~l-----------------~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~r~~~ 352 (364)
T PRK14570 298 FLI-----------------EKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAFQSYIK 352 (364)
T ss_pred EEE-----------------ECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 987 44 5889999999999999999999999999999999999999999998753
No 2
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=3.6e-58 Score=579.35 Aligned_cols=633 Identities=15% Similarity=0.171 Sum_probs=438.3
Q ss_pred cCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+||.+|. ++|||+| |.+++++|++.||+|+.++.+++ ....++. .+|. .++.+....
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~S---G~q~~kaLke~G~~Vi~vd~np~--t~~~~~~------~aD~-~yi~p~~~e-- 88 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYS---GTQACKALKEEGYEVVLINSNPA--TIMTDPE------TADR-TYIAPMTPE-- 88 (1102)
T ss_pred CCEEEEECCCccccccceeecch---HHHHHHHHHHcCCEEEEEeCCcc--cccCChh------hCcE-EEeCCCCHH--
Confidence 36999999875 8999975 99999999999999998775442 1111110 1111 122222111
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.+..++ ..+++|+|||.+||..|+++.+ +++|+.+||||+|+++.++++|+||..+|++|+++|+|+|++..+.
T Consensus 89 ~v~~ii--~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~ 166 (1102)
T PLN02735 89 LVEQVI--AKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIAT 166 (1102)
T ss_pred HHHHHH--HHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeC
Confidence 011111 2458999999999999999876 7899999999999999999999999999999999999999999887
Q ss_pred CCccchhhhhhhhhhcCCCCCC-CcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNS-GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~V 306 (953)
+.+. +.++.+ .++ ||+||||+.+++|.|+.+|+|.+|+.+.+.+.+...+++++|||+||.|++|++|.|
T Consensus 167 s~ee----a~~~~~-----~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G~kE~ev~V 237 (1102)
T PLN02735 167 TLDE----CFEIAE-----DIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLGWKEYELEV 237 (1102)
T ss_pred CHHH----HHHHHH-----HhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCeEEEEEE
Confidence 5432 223332 255 899999999999999999999999888777666556788999999999889999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCC-C
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGL-C 384 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~-~ 384 (953)
+++..++ .+.+++.| ++++...+. +. +...+|++ +++++.++|+++|.+++++||+ .
T Consensus 238 l~D~~g~---~i~v~~ie----------------~~dp~gvh~-G~-s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~ 296 (1102)
T PLN02735 238 MRDLADN---VVIICSIE----------------NIDPMGVHT-GD-SITVAPAQTLTDKEYQRLRDYSVAIIREIGVEC 296 (1102)
T ss_pred EEcCCCC---EEEEeeEE----------------EEcCCcccc-CC-EEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 9754332 33333322 223333332 32 56668984 9999999999999999999999 5
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh------
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR------ 458 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r------ 458 (953)
|++||||+++ .++|++||+||||+++ .+| +...+++|+++.++..++ |+..
T Consensus 297 G~~nVqf~l~----------------~~~g~~~ViEVNPR~s--~ss--~l~s~atG~~~a~~~~kl---alG~~l~~~~ 353 (1102)
T PLN02735 297 GGSNVQFAVN----------------PVDGEVMIIEMNPRVS--RSS--ALASKATGFPIAKMAAKL---SVGYTLDQIP 353 (1102)
T ss_pred CceEEEEEEE----------------CCCCcEEEEEecCCCC--Ccc--hhhhhhhCCCHHHHHHHH---HCCCChhhhc
Confidence 9999999872 1478999999998776 333 223344566554443222 1111
Q ss_pred ----------C-CCC--------CCCCCc-----------------ceec------------------------------
Q 002207 459 ----------F-PNL--------ASYNSV-----------------SSHL------------------------------ 472 (953)
Q Consensus 459 ----------~-~~~--------~~~~~~-----------------~~~~------------------------------ 472 (953)
| |.+ +|+|+. .|+|
T Consensus 354 ~~~~~~~~a~~ep~~d~~~~k~p~~~f~~f~~~~~~l~~~mks~ge~m~~gr~~~ea~~ka~~~~~~~~~~~~~~~~~~~ 433 (1102)
T PLN02735 354 NDITLKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGEAMALGRTFQESFQKALRSLETGFSGWGCAKVKEL 433 (1102)
T ss_pred cccccccchheeecCCcEEEEcccCCcccccCCCcccceeeeecceEEEecCCHHHHHHHHHHHhcCCCCCCCccccccc
Confidence 0 000 222210 0111
Q ss_pred -------------------------------------------------------cccccc--CC---Cc----------
Q 002207 473 -------------------------------------------------------PGRSSG--SK---PT---------- 482 (953)
Q Consensus 473 -------------------------------------------------------~~~~~~--~~---~~---------- 482 (953)
++++.. .+ ..
T Consensus 434 ~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~id~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~ 513 (1102)
T PLN02735 434 DWDWEQLKYKLRVPNPDRIHAIYAAMKKGMTVDEIHELTFIDPWFLTQLKELVDVEQFLKSRSLSELSKDDFYEVKRRGF 513 (1102)
T ss_pred cCCHHHHHHhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHcCC
Confidence 001100 00 00
Q ss_pred ----------------------------------------------------cccccCCCceEEEEecCCC-----cccc
Q 002207 483 ----------------------------------------------------EALNKREGIREVFVIFGGD-----TSER 505 (953)
Q Consensus 483 ----------------------------------------------------~~~~~~~~~~~v~vl~GG~-----s~E~ 505 (953)
++......++||.||-+|. +.|.
T Consensus 514 ~d~~ia~~~~~~~~~v~~~r~~~~~~~~~k~vd~~a~ef~~~t~y~y~ty~~~~~~~~~~~kkvlilG~G~~~igq~ief 593 (1102)
T PLN02735 514 SDKQIAFATKSTEKEVRSKRLSLGVTPSYKRVDTCAAEFEANTPYMYSSYDGECESAPTNKKKVLILGGGPNRIGQGIEF 593 (1102)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHCCCEeEEEeeCCCccccCCCCCcceeECCCCCCcccCCCceEEEeCccccccCccccc
Confidence 1111123567888887753 5788
Q ss_pred eeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCcccc
Q 002207 506 QVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRA 585 (953)
Q Consensus 506 ~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (953)
|.++..+. .+|+. .+|+++.|+-+|+.- +. ..+..+..+..
T Consensus 594 d~~~v~~~---~alr~-~G~~tI~v~~npetv--st-------d~~~aD~~y~~-------------------------- 634 (1102)
T PLN02735 594 DYCCCHAS---FALQD-AGYETIMMNSNPETV--ST-------DYDTSDRLYFE-------------------------- 634 (1102)
T ss_pred ceeHHHHH---HHHHH-cCCeEEEEeCCCccc--cC-------CcccCCeEEEE--------------------------
Confidence 88877664 66664 688888776666420 00 00011112211
Q ss_pred ccccccccceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCc--cHHHHHHHH----
Q 002207 586 AFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGED--GTLQSLLEA---- 658 (953)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEd--g~iq~llE~---- 658 (953)
+++.+++++. .++.+|.|++.+.|...-. ..+...|+.
T Consensus 635 -----------------------------------pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~f 679 (1102)
T PLN02735 635 -----------------------------------PLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPP 679 (1102)
T ss_pred -----------------------------------eCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccch
Confidence 1223333333 3467899998886654321 122333332
Q ss_pred -----cCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC
Q 002207 659 -----EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 733 (953)
Q Consensus 659 -----~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~ 733 (953)
.|+++.|+++.+..+|+||..+|++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||+.+
T Consensus 680 a~~~~~gi~i~G~s~e~i~i~~DK~~~k~~---l~~~GIp~p~~~~v~s~e--------ea~~~a~~i-GyPvvVKP~~g 747 (1102)
T PLN02735 680 SASGNGNVKIWGTSPDSIDAAEDRERFNAI---LNELKIEQPKGGIARSEA--------DALAIAKRI-GYPVVVRPSYV 747 (1102)
T ss_pred hhhhcCCeEEECCCHHHHHHhcCHHHHHHH---HHHcCCCCCCeeEeCCHH--------HHHHHHHhc-CCCeEEEeCCC
Confidence 3899999999999999999999999 999999999998876432 234456788 69999999999
Q ss_pred CCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcC
Q 002207 734 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 813 (953)
Q Consensus 734 gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g 813 (953)
++|.|+.+|++.+||.. +++.+++.. .+.++|||+||++.
T Consensus 748 ~gG~G~~iV~~~eeL~~---al~~a~~~~-----------------~~~~vlVEefI~~g-------------------- 787 (1102)
T PLN02735 748 LGGRAMEIVYSDDKLKT---YLETAVEVD-----------------PERPVLVDKYLSDA-------------------- 787 (1102)
T ss_pred CCCCcEEEECCHHHHHH---HHHHHHHhc-----------------CCCCEEEEEecCCc--------------------
Confidence 99999999999999886 566665441 14579999999842
Q ss_pred CCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcce
Q 002207 814 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGF 893 (953)
Q Consensus 814 ~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ 893 (953)
+|++|.++++....+.+.+.++... +.+++.|.+...+|++ .+++++.+++++.+.+++++|++.|+
T Consensus 788 ----~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~--~L~~e~~~~i~~~a~ki~~~L~~~G~ 854 (1102)
T PLN02735 788 ----TEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQ--TIPSSCLATIRDWTTKLAKRLNVCGL 854 (1102)
T ss_pred ----EEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCC--CCCHHHHHHHHHHHHHHHHHcCCcce
Confidence 4999999987533333344444332 3445666666677764 37899999999999999999999999
Q ss_pred EEEEEEEEcCCCcEEEEeeCCCCCC
Q 002207 894 SRIDAFVNVDNGEVLIIEVNTVPGM 918 (953)
Q Consensus 894 ariDf~v~~~~g~~~viEINt~PGl 918 (953)
.+|||+++. +|++|||||||+|+-
T Consensus 855 ~~vqf~v~~-dg~~yviEiNpR~s~ 878 (1102)
T PLN02735 855 MNCQYAITP-SGEVYIIEANPRASR 878 (1102)
T ss_pred eeEEEEEcC-CCcEEEEEEeCCCCc
Confidence 999999974 689999999999973
No 3
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=2.1e-59 Score=529.69 Aligned_cols=344 Identities=23% Similarity=0.338 Sum_probs=267.3
Q ss_pred ceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecc-cccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 491 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASS-IDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 491 ~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
++||+|||||.|+||||||.||++|+.+|++..+|+|+||+|+++ |.|+..... ..+.
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~~----------~~~~----------- 60 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLLDSV----------PDPP----------- 60 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEecCcc----------cccc-----------
Confidence 579999999999999999999999999994457999999999998 777643110 0000
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
. ..........+ + .....++ .......+|+|||++||.+|||
T Consensus 61 -~-------~~~~~~~~~~~---------~---~~~~~~~------------------~~~~~~~~D~vf~~lhG~~GEd 102 (364)
T PRK14570 61 -K-------LIKRDVLPIVS---------L---IPGCGIF------------------VNNKNLEIDVVFPIVHGRTGED 102 (364)
T ss_pred -c-------ccccccccccc---------c---ccccccc------------------ccCcCcCCCEEEEcCCCCCCCc
Confidence 0 00000000000 0 0000000 0001124799999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|+||++||++||||+||++.++++||||..||++ |+++|||||+|..+...++.. +..+..+.+...+ +||+|||
T Consensus 103 g~iqglle~~giPy~Gs~~~asal~~DK~~tK~~---l~~~GIpt~p~~~~~~~~~~~-~~~~~~~~~~~~l-g~PviVK 177 (364)
T PRK14570 103 GAIQGFLKVMDIPCVGAGILGSAISINKYFCKLL---LKSFNIPLVPFIGFRKYDYFL-DKEGIKKDIKEVL-GYPVIVK 177 (364)
T ss_pred CHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHH---HHHcCCCCCCEEEEecccccc-chHHHHHHHHHhc-CCCEEEE
Confidence 9999999999999999999999999999999999 999999999998887643221 1122233444678 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|+++|||.||++|++.+||.. +++.++++ ++.+|||+||+|+
T Consensus 178 P~~~GsS~Gv~~v~~~~el~~---al~~a~~~-------------------~~~vlVEefI~Gr---------------- 219 (364)
T PRK14570 178 PAVLGSSIGINVAYNENQIEK---CIEEAFKY-------------------DLTVVIEKFIEAR---------------- 219 (364)
T ss_pred eCCCCCCCcEEEeCCHHHHHH---HHHHHHhC-------------------CCCEEEECCcCCE----------------
Confidence 999999999999999999885 78888765 5779999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecC-Ccccccccccc--CCCc-eeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES-GDILSLEEKFQ--GGTG-INLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~-~~~~d~~~Ky~--~g~~-~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
|++|+|+++.. .. +.|..++... ..||||++||. .+.+ ...+|++ +++++.++|+++|.+++
T Consensus 220 ---------Ei~v~Vlg~~~-~~-v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~---l~~e~~~~i~~~A~~~~ 285 (364)
T PRK14570 220 ---------EIECSVIGNEQ-IK-IFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH---LDTKHLLDIKEYAFLTY 285 (364)
T ss_pred ---------EEEEEEECCCC-ce-EeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC---CCHHHHHHHHHHHHHHH
Confidence 99999998753 22 3444555543 36999999995 3443 4567877 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
++|||+|++|||||++.++|++|||||||+||||+.|.++++|.+++ ..| .+|+++||++|++|+
T Consensus 286 ~aLg~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G-~~~-~~li~~li~~a~~r~ 350 (364)
T PRK14570 286 KNLELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDG-LQY-KSLVDNLIDLAFQSY 350 (364)
T ss_pred HHhCCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcC-CCH-HHHHHHHHHHHHHHH
Confidence 99999999999999985458999999999999999999888888774 455 699999999999886
No 4
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=100.00 E-value=1.2e-58 Score=522.72 Aligned_cols=335 Identities=23% Similarity=0.324 Sum_probs=266.7
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcch
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLS 154 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 154 (953)
+|||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+..+...............+.+.. ..+....
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHGLLVLE 82 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccccccccccccC
Confidence 57999999999999999999999999999999999999999999999864321000000000000000000 0000000
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
. ......++|+|||++||.+||||++|++||.+|+||+||++.++++||||..+|++|+++|||||+++.+...+.
T Consensus 83 ~-~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~~--- 158 (343)
T PRK14568 83 Q-GEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADER--- 158 (343)
T ss_pred c-cccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCch---
Confidence 0 000113699999999999999999999999999999999999999999999999999999999999998865431
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
... ..++||+||||+++|||+||++|++.+|+.++...++ .+++++|||+||+| +|++|.+++++
T Consensus 159 -~~~-------~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~--~~~~~vlVEe~I~G-~E~sv~vl~~~---- 223 (343)
T PRK14568 159 -PDA-------ATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESAR--QYDSKVLIEEAVVG-SEVGCAVLGNG---- 223 (343)
T ss_pred -hhh-------hhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCcEEEECCcCC-EEEEEEEEcCC----
Confidence 110 2367999999999999999999999999887766554 36789999999998 99999999532
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccC---CCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~---~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
....+..+.++.. .++||+|..||.. ...+.+.+|+++++++.++|+++|.+++++|||+|++||||
T Consensus 224 ~~~~~~~~~~i~~----------~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf 293 (343)
T PRK14568 224 ADLVVGEVDQIRL----------SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDM 293 (343)
T ss_pred CCcceecceEEec----------CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1223333344432 3469999988863 22245778999999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
++ +++|++||+||||+||||++|+||++|+++|++|++|+++||+.|++
T Consensus 294 ~l-----------------~~~g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~li~~a~~ 342 (343)
T PRK14568 294 FL-----------------QEDGTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDRLVSLALT 342 (343)
T ss_pred EE-----------------eCCCCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 87 67899999999999999999999999999999999999999999874
No 5
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=3.2e-58 Score=517.25 Aligned_cols=328 Identities=29% Similarity=0.401 Sum_probs=271.3
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+|||||.|+||||||.||++|+++|++.||+|++++++++|.|+..+........+ ..... .+.. .
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~----~~~~---~ 72 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELADD---DNDKE----DLSL---L 72 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhcccc---ccccc----ccch---h
Confidence 579999999999999999999999999999999999999999999998643210000000 00000 0000 0
Q ss_pred HHhhcc--CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 157 AEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 157 ~~~~~~--~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
...... ++|+|||++||.+||||.+|++||.+||||+|+++.++++|+||..+|++|+++|||+|++..+...+....
T Consensus 73 ~~~~~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 73 ILPSGGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred ccccccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccccchh
Confidence 000011 699999999999999999999999999999999999999999999999999999999999998876543101
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
.+..+. +.++||+||||+++|||+||++|++.+|+.+++.+.+ .+++.+|||+||+| +|++|.++++ +
T Consensus 153 ~~~~~~-----~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~--~~~~~vlvEefI~G-~E~~v~vl~~----~ 220 (333)
T PRK01966 153 SLAEIE-----AKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAF--EYDRKVLVEQGIKG-REIECAVLGN----D 220 (333)
T ss_pred hHHHHH-----HhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHH--hcCCcEEEEcCcCC-EEEEEEEECC----C
Confidence 112222 2368899999999999999999999999887777665 36789999999998 9999999952 1
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeec
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFL 394 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~ 394 (953)
..+++++|+.. ...||||.+||..+. +.+.+|+.+++++.++++++|.+++++|||+|++||||++
T Consensus 221 --~~~~~~~ei~~----------~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~- 286 (333)
T PRK01966 221 --PKASVPGEIVK----------PDDFYDYEAKYLDGS-AELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFL- 286 (333)
T ss_pred --CeEcccEEEec----------CCceEcHHHccCCCC-ceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE-
Confidence 23667777653 236999999998654 6678999999999999999999999999999999999987
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHh
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 456 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~ 456 (953)
+++|++||+||||+||||++|+||++++++|++|.+|+++||+.|+
T Consensus 287 ----------------~~~g~~~vlEiNt~Pg~t~~s~~p~~~~~~G~~~~~l~~~ii~~a~ 332 (333)
T PRK01966 287 ----------------TEDGEIYLNEINTMPGFTPISMYPKLWEASGLSYPELIDRLIELAL 332 (333)
T ss_pred ----------------cCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999986
No 6
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=6.1e-58 Score=517.54 Aligned_cols=341 Identities=23% Similarity=0.287 Sum_probs=270.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccc-cccC-CCCC-ccccccccccccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ-VYSN-TPAD-FDFKLESLAQGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~ 154 (953)
+||+|||||.|+|||||+.||++|+++|++.||+|.+++++.+|.|+...... .+.. ...+ ..+ ........ ...
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 79 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLF-LEEFQKAN-GVS 79 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeeccccccccccccccccccc-cccccccc-ccc
Confidence 58999999999999999999999999999999999999999999887422110 0000 0000 000 00000000 000
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccc--
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN-- 232 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~-- 232 (953)
.........+|++|+++||.+||||++|++||.+||||+|+++.++++|+||..||++|+++|||||+++.+.+.+..
T Consensus 80 ~~~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~ 159 (347)
T PRK14572 80 EPADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNS 159 (347)
T ss_pred ccccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccccccC
Confidence 000001236999999999999999999999999999999999999999999999999999999999999988654321
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
........ +.++||+||||+++|||+||++|++.+|+..++..++. +++.+|||+||+| +|++|.|+++..+
T Consensus 160 ~~~~~~~~-----~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~--~~~~vlVEefI~G-~E~sv~vi~~~~~ 231 (347)
T PRK14572 160 PRKTLLKL-----ESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFE--SDSKVMSQSFLSG-TEVSCGVLERYRG 231 (347)
T ss_pred hHHHHHHH-----HhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCCEEEEcCccc-EEEEEEEEeCccC
Confidence 11111111 23689999999999999999999999998877766553 6778999999998 9999999964222
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 392 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~ 392 (953)
+...++++++.|+.. .+.||+|++||..+. +...+|+++++++.++++++|.+++++|||+|++||||+
T Consensus 232 g~~~~~~l~~~ei~~----------~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~ 300 (347)
T PRK14572 232 GKRNPIALPATEIVP----------GGEFFDFESKYKQGG-SEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFI 300 (347)
T ss_pred CCCCceecccEEEec----------CCCccCHHHccCCCC-eEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEE
Confidence 223456677776542 457999999998765 566789999999999999999999999999999999998
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+ + +|++||+||||+||||++|++|++|++.|++|.+|++.||+.|++
T Consensus 301 ~-----------------~-~~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~ii~~a~~ 347 (347)
T PRK14572 301 I-----------------V-DGEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDLIEIGLK 347 (347)
T ss_pred E-----------------E-CCcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHhC
Confidence 6 3 578999999999999999999999999999999999999999864
No 7
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=4.9e-56 Score=552.92 Aligned_cols=339 Identities=27% Similarity=0.317 Sum_probs=274.4
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
.++++||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+..+........... ...+ .
T Consensus 448 ~~~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~--------~~~~-~- 517 (809)
T PRK14573 448 EPKKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSG--------KSVL-S- 517 (809)
T ss_pred CCCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEeccccccccccccc--------cccc-c-
Confidence 34578999999999999999999999999999999999999999999988754311000000000 0000 0
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccc-
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN- 232 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~- 232 (953)
..... ...++|+|||++||.+||||++|++||.+||||+||++.++++||||..+|++|+++|||||+|..+...++.
T Consensus 518 ~~~~~-~~~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~ 596 (809)
T PRK14573 518 SEIAQ-ALAKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKR 596 (809)
T ss_pred hhhhh-ccccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhccc
Confidence 00001 0136999999999999999999999999999999999999999999999999999999999999988653211
Q ss_pred --hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 233 --ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 233 --~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
...+.++. +.++||+||||+++|||+||++|++.+|+.+++.+++. +++++|||+||.||+|++|+|++++
T Consensus 597 ~~~~~~~~~~-----~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~--~~~~vlVEe~i~~grEi~v~vl~~~ 669 (809)
T PRK14573 597 EPELCLAHIV-----EAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFL--YDTDVFVEESRLGSREIEVSCLGDG 669 (809)
T ss_pred ChHHHHHHHH-----HhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHh--cCCcEEEEeccCCCEEEEEEEEeCC
Confidence 11122222 24789999999999999999999999999888877653 6789999999877799999999743
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCC--ceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ--QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~--~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
. +..++..+.|+.. ...||||++||...+ .+...+|+++++++.++|+++|.+++++|||+|++|
T Consensus 670 ~---~~~~~~~~~e~~~----------~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~r 736 (809)
T PRK14573 670 S---SAYVIAGPHERRG----------SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCR 736 (809)
T ss_pred C---CceEeccceEEcc----------CCCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 2 1223344555431 346999999995332 234567999999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
|||++ +++|++||+||||+||||++|+||++|+++|++|++|+++||+.|++|+.
T Consensus 737 iDf~v-----------------~~~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~ii~~a~~r~~ 791 (809)
T PRK14573 737 IDFFL-----------------DEEGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQLIIDGLHKFD 791 (809)
T ss_pred EEEEE-----------------cCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 99987 56789999999999999999999999999999999999999999999875
No 8
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=100.00 E-value=9.5e-56 Score=499.20 Aligned_cols=337 Identities=24% Similarity=0.352 Sum_probs=261.8
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
.++||+|||||.|+||||||.||++|+.+|+. .+|+|+||+|+++|.|+..... ...|..+..
T Consensus 2 ~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~-~~~~v~~i~i~~~g~~~~~~~~---------~~~~~~~~~------- 64 (343)
T PRK14568 2 NRIKVGILFGGCSEEHPVSVKSAIEVARNLDT-EKYEPFYIGITKSGVWKLCDGP---------CAEWENGSC------- 64 (343)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCCeEEEEEECCCCcEEeCCcc---------ccccccccc-------
Confidence 47899999999999999999999999999974 8999999999998888753211 001110000
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.. . .+.+.. . ..+|..... ... ....+|+|||++||.+|||
T Consensus 65 ~~----~--~~~~~~-------------------~----~~~~~~~~~--------~~~--~~~~~d~vf~~lhG~~ged 105 (343)
T PRK14568 65 RP----A--VLSPDR-------------------K----VHGLLVLEQ--------GEY--ETIRLDVVFPVLHGKLGED 105 (343)
T ss_pred cc----e--eecccc-------------------c----cccccccCc--------ccc--ccccCCEEEEcCCCCCCCc
Confidence 00 0 000000 0 000000000 000 1124799999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|+||++||.+||||+||++.++++||||..||++ |+++|||||+|..+...+. .. .+.+ +||+|||
T Consensus 106 g~iq~lle~~gipy~G~~~~asai~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~--------~~--~~~l-~~P~iVK 171 (343)
T PRK14568 106 GAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIV---AKNAGIATPAFWTVTADER--------PD--AATL-TYPVFVK 171 (343)
T ss_pred hHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHcCcCcCCEEEEECCch--------hh--hhhc-CCCEEEE
Confidence 9999999999999999999999999999999999 9999999999998876431 11 2467 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|+++|||+||++|++.+||.. +++.++++ +..+|||+||+|+
T Consensus 172 P~~~gsS~Gv~~v~~~~eL~~---a~~~a~~~-------------------~~~vlVEe~I~G~---------------- 213 (343)
T PRK14568 172 PARSGSSFGVSKVNSADELDY---AIESARQY-------------------DSKVLIEEAVVGS---------------- 213 (343)
T ss_pred eCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEECCcCCE----------------
Confidence 999999999999999999885 67777655 5789999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccC----CCceeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG----GTGINLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~----g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
|++|+++++++... ..+..++....+||+|+.||.. +.+...+|++ +++++.++++++|.+++
T Consensus 214 ---------E~sv~vl~~~~~~~-~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~ 280 (343)
T PRK14568 214 ---------EVGCAVLGNGADLV-VGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD---ISAEERSRVQETAKAIY 280 (343)
T ss_pred ---------EEEEEEEcCCCCcc-eecceEEecCCCccchhhhhccccCCCCeeEEeCCC---CCHHHHHHHHHHHHHHH
Confidence 99999998754322 2223344445679999988852 2344578887 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
++|||+|++|||||++. +|++||+||||+||||+.|.+++++.++ |..| .+|+++||++|++
T Consensus 281 ~~Lg~~G~~rvDf~l~~-~g~~~llEINt~Pg~t~~S~~p~~~~~~-G~~~-~~l~~~li~~a~~ 342 (343)
T PRK14568 281 RALGCRGLARVDMFLQE-DGTVVLNEVNTLPGFTSYSRYPRMMAAA-GIPL-AELIDRLVSLALT 342 (343)
T ss_pred HHhCCCcEEEEEEEEeC-CCCEEEEEeeCCCCCCccCHHHHHHHHc-CCCH-HHHHHHHHHHHhc
Confidence 99999999999999985 6899999999999999999888888655 4556 5999999999975
No 9
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=4.2e-52 Score=526.77 Aligned_cols=629 Identities=19% Similarity=0.193 Sum_probs=430.9
Q ss_pred cCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+||+||+ .+|+|+| |.+++++|++.||+|+.++.+++.. .... ...|. .+..+....
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~s---g~q~~kalke~G~~vi~v~~np~~~--~~~~------~~aD~-~y~~p~~~~-- 71 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYS---GSQACKALKEEGYRVILVNSNPATI--MTDP------EMADK-VYIEPLTPE-- 71 (1050)
T ss_pred CcEEEEECCCcchhcchhcccch---HHHHHHHHHHcCCEEEEEecchhhc--cCCh------hcCCE-EEECCCCHH--
Confidence 46999999875 7899975 9999999999999999887655321 0000 01111 112221110
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchH----HHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGG----IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~----iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.+..+++ ++++|.|+|.++|+.+.+.. .+++|+.+|++++|+++.++.+|.||..+|++|+++|+|+|++..+.
T Consensus 72 ~v~~ii~--~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~ 149 (1050)
T TIGR01369 72 AVEKIIE--KERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAH 149 (1050)
T ss_pred HHHHHHH--HhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecC
Confidence 1111111 35899999999999988754 47899999999999999999999999999999999999999999887
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
+.+. +.++.+ .++||+||||+.+++|.|+.+|+|.+|+.+.+.+.+......++|||+||+|++|+++.|+
T Consensus 150 s~~e----~~~~~~-----~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~~Eiev~v~ 220 (1050)
T TIGR01369 150 SVEE----ALAAAK-----EIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGWKEIEYEVM 220 (1050)
T ss_pred CHHH----HHHHHH-----HhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCceEEEEEEE
Confidence 6432 222222 3688999999999999999999999998877666654333468999999999889999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
++..|+ .+.+++.| .+++...+. +. +....|++ ++++..++++++|.+++++||+.|.
T Consensus 221 rd~~g~---~~~~~~~e----------------~~~p~gvh~-g~-~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~ 279 (1050)
T TIGR01369 221 RDSNDN---CITVCNME----------------NFDPMGVHT-GD-SIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGG 279 (1050)
T ss_pred EeCCCC---EEEEeece----------------eccCcceec-Cc-eEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcce
Confidence 875443 23322221 223333232 22 45568886 8999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHH----HHhhh---
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIG----HACSR--- 458 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~----~a~~r--- 458 (953)
++|||++ ++ +|++||+||||+++-+ +. ...+++|+++.++..++-- ..+..
T Consensus 280 ~~Vef~l-----------------~~~~g~~~viEiNPR~~~s--~~--l~s~atG~pl~~~~~~~alG~~l~~~~n~i~ 338 (1050)
T TIGR01369 280 CNVQFAL-----------------NPDSGRYYVIEVNPRVSRS--SA--LASKATGYPIAKVAAKLAVGYGLDELKNPVT 338 (1050)
T ss_pred eEEEEEE-----------------ECCCCcEEEEEeecCcCcc--hh--hhhHHhCCCHHHHHHHHHcCCCchhhcCCCc
Confidence 9999987 33 5789999999988743 22 2233567766555433320 00000
Q ss_pred ------C-CCC--------CCCCCc---------------c--eec----------------------------------
Q 002207 459 ------F-PNL--------ASYNSV---------------S--SHL---------------------------------- 472 (953)
Q Consensus 459 ------~-~~~--------~~~~~~---------------~--~~~---------------------------------- 472 (953)
+ +++ +|++.. + |.+
T Consensus 339 g~~~~~~~p~~~~~~~k~p~~~~~~~~~~~~~~~~~~k~~G~v~~~g~~~~ea~~ka~~~~~~~~~~~~~~~~~~~~~~~ 418 (1050)
T TIGR01369 339 GTTPASFEPSLDYVVVKIPRWDFDKFAGVDRKLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGATGFDLPDREVEPDED 418 (1050)
T ss_pred CcCccccCcCCCeEEEEEEeCCCCCCCcccCCcCcccceeeEEEEECCCHHHHHHHHHHHhccCCCCCCccccCCCCHHH
Confidence 1 000 111100 0 000
Q ss_pred -------------------------------------------------cccccc-----CCCc----------------
Q 002207 473 -------------------------------------------------PGRSSG-----SKPT---------------- 482 (953)
Q Consensus 473 -------------------------------------------------~~~~~~-----~~~~---------------- 482 (953)
++++.. ++.+
T Consensus 419 ~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~d~~~a 498 (1050)
T TIGR01369 419 LWRALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKLTELDPELLRRAKKLGFSDAQIA 498 (1050)
T ss_pred HHHhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHcCCCHHHHH
Confidence 111100 0000
Q ss_pred ----------------------------------------------c-ccccCCCceEEEEecCCC-----cccceeccc
Q 002207 483 ----------------------------------------------E-ALNKREGIREVFVIFGGD-----TSERQVSLM 510 (953)
Q Consensus 483 ----------------------------------------------~-~~~~~~~~~~v~vl~GG~-----s~E~~vS~~ 510 (953)
+ +......++||.||-+|. +.|.|.|++
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~k~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~~kvlvlG~G~~rig~~~efd~~~v 578 (1050)
T TIGR01369 499 RLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYSTYEGERDDVPFTDKKKVLVLGSGPNRIGQGVEFDYCCV 578 (1050)
T ss_pred HHhCcCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCeeEecCCCCCCcccCCCCceEEEecCcccccccccccchHHH
Confidence 0 111113456888877654 578887766
Q ss_pred cHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCccccccccc
Q 002207 511 SGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSH 590 (953)
Q Consensus 511 s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (953)
.+ ..+|+. .+|+++.|..+|+. +... .+..+..+..
T Consensus 579 ~~---i~al~~-~G~~vI~v~~npet-vs~d--------~~~~D~ly~e------------------------------- 614 (1050)
T TIGR01369 579 HA---VLALRE-LGYETIMINYNPET-VSTD--------YDTSDRLYFE------------------------------- 614 (1050)
T ss_pred HH---HHHHHh-CCCEEEEEecCCcc-cccc--------ccccceEEEe-------------------------------
Confidence 65 366664 67887765444421 0000 0000111110
Q ss_pred cccceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChH
Q 002207 591 LRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 669 (953)
Q Consensus 591 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~ 669 (953)
+.+.+.+++. .++.+|.|++.+.|.... .+...|+..|+|+.|+++.
T Consensus 615 ------------------------------p~~~e~vl~i~~~e~idgVI~~~gg~~~~--~la~~le~~Gi~i~G~s~~ 662 (1050)
T TIGR01369 615 ------------------------------PLTFEDVMNIIELEKPEGVIVQFGGQTPL--NLAKALEEAGVPILGTSPE 662 (1050)
T ss_pred ------------------------------cCCHHHHHHHHhhcCCCEEEEccCcHhHH--HHHHHHHHCCCcEECCCHH
Confidence 1112222322 345789999888765433 5778889999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHH
Q 002207 670 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 749 (953)
Q Consensus 670 as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~ 749 (953)
++..|.||..++++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||+.+++|.||.+|++.+||.
T Consensus 663 ~i~~~~DK~~f~~l---L~~~GIp~P~~~~v~s~e--------e~~~~~~~i-gyPvIVKP~~~~Gg~gv~iv~~~eeL~ 730 (1050)
T TIGR01369 663 SIDRAEDREKFSEL---LDELGIPQPKWKTATSVE--------EAVEFASEI-GYPVLVRPSYVLGGRAMEIVYNEEELR 730 (1050)
T ss_pred HHHHHCCHHHHHHH---HHHCCcCCCCeEEECCHH--------HHHHHHHhc-CCCEEEEECCCCCCCCeEEECCHHHHH
Confidence 99999999999998 999999999999887633 234456778 699999999999999999999999988
Q ss_pred HHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc-CcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE-TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 750 ~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~-G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
. +++.++... ...++|||+||+ |. |++|.++.++
T Consensus 731 ~---~l~~a~~~s-----------------~~~~vlVeefI~~G~-------------------------E~~Vd~l~d~ 765 (1050)
T TIGR01369 731 R---YLEEAVEVS-----------------PEHPVLIDKYLEDAV-------------------------EVDVDAVSDG 765 (1050)
T ss_pred H---HHHHHHHhC-----------------CCCCEEEeecCCCCe-------------------------EEEEEEEEeC
Confidence 6 455554331 246799999999 64 9999999887
Q ss_pred CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEE
Q 002207 829 GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908 (953)
Q Consensus 829 ~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~ 908 (953)
+... ..+..+.... ...+.|.+...+|+. .+++++.+++++++.+++++||+.|+++|||+++ +|++|
T Consensus 766 g~v~-i~~i~e~~~~-------~gv~sGds~~~~P~~--~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~--~~~~y 833 (1050)
T TIGR01369 766 EEVL-IPGIMEHIEE-------AGVHSGDSTCVLPPQ--TLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK--DGEVY 833 (1050)
T ss_pred CEEE-EEEEEEeecc-------cCCcCCCceEEecCC--CCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE--CCeEE
Confidence 6533 2222222111 112345556667774 2688999999999999999999999999999998 47899
Q ss_pred EEeeCCCCC
Q 002207 909 IIEVNTVPG 917 (953)
Q Consensus 909 viEINt~PG 917 (953)
|||||++++
T Consensus 834 vIEvNpR~s 842 (1050)
T TIGR01369 834 VIEVNPRAS 842 (1050)
T ss_pred EEEEeCCCC
Confidence 999999875
No 10
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.5e-52 Score=530.78 Aligned_cols=631 Identities=17% Similarity=0.183 Sum_probs=428.8
Q ss_pred cCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+||.+|. .+|+|+| |.+++++|++.||+|+.++.++.. +..++ ...|. .++.+... .
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~s---g~~~~~aLke~G~~vi~v~~~p~~--~~~~~------~~aD~-~y~~p~~~--e 72 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYS---GTQACKALREEGYRVVLVNSNPAT--IMTDP------EMADA-TYIEPITP--E 72 (1066)
T ss_pred CCEEEEECCchhhhcccccccch---HHHHHHHHHHcCCEEEEEcCCccc--ccCCc------ccCCE-EEECCCCH--H
Confidence 36899998874 7999995 999999999999999987654421 11000 01111 11222110 0
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.+..+. ..+++|+|+|.+||..|.+..+ ++.|+.+|++++|+++.++.+|+||..+|++|+++|+|+|++..+.
T Consensus 73 ~l~~ii--~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~ 150 (1066)
T PRK05294 73 FVEKII--EKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAH 150 (1066)
T ss_pred HHHHHH--HHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeC
Confidence 011111 1458999999999999998765 5789999999999999999999999999999999999999999987
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
+.++ +.++.+ .++||+||||+.+++|.|+.+|++.+|+.+.+.+.+.......+|||+||+|++|+++.++
T Consensus 151 s~~e----~~~~~~-----~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~~Eisv~v~ 221 (1066)
T PRK05294 151 SMEE----ALEVAE-----EIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVM 221 (1066)
T ss_pred CHHH----HHHHHH-----HcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCceEEEEEEE
Confidence 6432 333332 3678999999999999999999999998877665554334568999999998789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCC-C
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLC-D 385 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~-G 385 (953)
+++.|+ .+.+++.| .+++.. ++.+. .....|+ .++++..++++++|.+++++||+. |
T Consensus 222 rd~~g~---~~~~~~~e----------------~~dp~g-ih~g~-~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G 280 (1066)
T PRK05294 222 RDKNDN---CIIVCSIE----------------NIDPMG-VHTGD-SITVAPAQTLTDKEYQMLRDASIAIIREIGVETG 280 (1066)
T ss_pred EcCCCC---EEEEeeee----------------eccccc-eecCC-eEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccC
Confidence 864432 33322221 122222 22232 4456788 689999999999999999999999 9
Q ss_pred eeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH-------------
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII------------- 452 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li------------- 452 (953)
.++|||+++ ..+|++||+||||+++-+ +.+ ..+++|+++.+...++-
T Consensus 281 ~~~vef~~~----------------~~~g~~~viEiNPR~~~s--~~~--~s~~tG~pl~~~~~~~~lG~~l~~m~n~~~ 340 (1066)
T PRK05294 281 GCNVQFALN----------------PKDGRYIVIEMNPRVSRS--SAL--ASKATGYPIAKVAAKLAVGYTLDEIKNDIT 340 (1066)
T ss_pred ceEEEEEEE----------------CCCCcEEEEEeecCCCcc--eee--eeHhhCCCHHHHHHHHHcCCChHHhcCccc
Confidence 999999873 146889999999887632 221 11244555544433221
Q ss_pred HHHhhhC-CCC--------CCCCC--------cc---------eec----------------------------------
Q 002207 453 GHACSRF-PNL--------ASYNS--------VS---------SHL---------------------------------- 472 (953)
Q Consensus 453 ~~a~~r~-~~~--------~~~~~--------~~---------~~~---------------------------------- 472 (953)
......+ +.+ +|++. .+ |.+
T Consensus 341 g~~~~~~~p~~~~v~~k~p~~~~~~y~k~~~~~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1066)
T PRK05294 341 GKTPASFEPSLDYVVTKIPRFAFEKFPGADRRLGTQMKSVGEVMAIGRTFEESLQKALRSLEIGVTGLDEDLFEEESLEE 420 (1066)
T ss_pred CCCcccccccCCeEEEEccCCccccccCCCCCccceecccceEEEEcCCHHHHHHHHHHhcCCCCCCCCccccccCCHHH
Confidence 0000000 000 00000 00 000
Q ss_pred -------------------------------------------------ccccccCC--Cc-------------------
Q 002207 473 -------------------------------------------------PGRSSGSK--PT------------------- 482 (953)
Q Consensus 473 -------------------------------------------------~~~~~~~~--~~------------------- 482 (953)
++.++... ..
T Consensus 421 ~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~d~~~a~ 500 (1066)
T PRK05294 421 LREELKEPTPERLFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKENGLPLDAELLREAKRLGFSDARIAK 500 (1066)
T ss_pred HHhhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCCHHHHHH
Confidence 11111000 00
Q ss_pred ---------------------------------------------cccccCCCceEEEEecCCC-----cccceeccccH
Q 002207 483 ---------------------------------------------EALNKREGIREVFVIFGGD-----TSERQVSLMSG 512 (953)
Q Consensus 483 ---------------------------------------------~~~~~~~~~~~v~vl~GG~-----s~E~~vS~~s~ 512 (953)
++......++||.||.+|. +.|.|.|++.+
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~k~~d~~a~e~~~~~~~~y~~~~~~~~~~~~~~kkvlilG~G~~~ig~~~efdy~~v~~ 580 (1066)
T PRK05294 501 LLGVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYSTYEEECESNPSDRKKVLVLGSGPNRIGQGIEFDYCCVHA 580 (1066)
T ss_pred HhCcCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCcceeECCCCCCCccCCCceEEEECccccccccccccchhHHHH
Confidence 1111113567888887654 67888777754
Q ss_pred HHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCccccccccccc
Q 002207 513 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLR 592 (953)
Q Consensus 513 ~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (953)
..+|+. .+|+++.+..+|+. .... .+..+..+..
T Consensus 581 ---i~alk~-~G~~vi~v~~npet-vs~~--------~~~aD~~y~e--------------------------------- 614 (1066)
T PRK05294 581 ---VLALRE-AGYETIMVNCNPET-VSTD--------YDTSDRLYFE--------------------------------- 614 (1066)
T ss_pred ---HHHHHH-CCCEEEEEeCCccc-cccc--------cchhhheeec---------------------------------
Confidence 366764 67877765444421 0000 0000011110
Q ss_pred cceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHH
Q 002207 593 NQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 671 (953)
Q Consensus 593 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as 671 (953)
+++.+.+++. .++.+|.|++.+.|..+. .+...||.+|+|+.|+++.++
T Consensus 615 ----------------------------~~~~e~v~~i~~~e~~dgVi~~~g~~~~~--~la~~le~~Gi~ilg~s~~ai 664 (1066)
T PRK05294 615 ----------------------------PLTLEDVLEIIEKEKPKGVIVQFGGQTPL--KLAKALEAAGVPILGTSPDAI 664 (1066)
T ss_pred ----------------------------CCCHHHHHHHHHHcCCCEEEEEeCchhHH--HHHHHHHHCCCceeCCCHHHH
Confidence 1122232332 346789999998777664 677889999999999999999
Q ss_pred HHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHH
Q 002207 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 751 (953)
Q Consensus 672 ~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~ 751 (953)
.+|+||..++++ |+++|||+|++..+.+.+ .+.++.+.+ +||+||||+.+++|.|+.+|++.+||..
T Consensus 665 ~~~~DK~~~~~~---L~~~GIp~P~~~~~~s~e--------e~~~~~~~i-gyPvvVKP~~~~Gg~Gv~iv~~~eeL~~- 731 (1066)
T PRK05294 665 DLAEDRERFSKL---LEKLGIPQPPNGTATSVE--------EALEVAEEI-GYPVLVRPSYVLGGRAMEIVYDEEELER- 731 (1066)
T ss_pred HHhCCHHHHHHH---HHHcCcCCCCeEEECCHH--------HHHHHHHhc-CCCeEEEeCCCCCCCcEEEECCHHHHHH-
Confidence 999999999999 999999999999886532 233455678 6999999999999999999999999886
Q ss_pred HHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCc
Q 002207 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 831 (953)
Q Consensus 752 ~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~ 831 (953)
+++.++... ...++|||+||+|. +|++|.++.+++.
T Consensus 732 --~~~~a~~~s-----------------~~~~vlIEefI~G~------------------------~E~sV~~v~dg~~- 767 (1066)
T PRK05294 732 --YMREAVKVS-----------------PDHPVLIDKFLEGA------------------------IEVDVDAICDGED- 767 (1066)
T ss_pred --HHHHHHhhC-----------------CCCcEEEEecCCCC------------------------EEEEEEEEecCCe-
Confidence 455554331 15679999999996 5999999986542
Q ss_pred eeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEe
Q 002207 832 HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911 (953)
Q Consensus 832 ~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viE 911 (953)
+.+.+.++..... ..+.|.+...+|+. .++++..+++++++.+++++||+.|+++|||+++ +|++||+|
T Consensus 768 v~i~~i~e~i~~~-------gv~~Gds~~~~p~~--~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~--~~~~yViE 836 (1066)
T PRK05294 768 VLIGGIMEHIEEA-------GVHSGDSACSLPPQ--TLSEEIIEEIREYTKKLALELNVVGLMNVQFAVK--DDEVYVIE 836 (1066)
T ss_pred EEEeeeEEeeeec-------cccCCCCcEEecCC--CCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEE--CCeEEEEE
Confidence 2233333322111 12345555566653 2688999999999999999999999999999997 57899999
Q ss_pred eCCCCC
Q 002207 912 VNTVPG 917 (953)
Q Consensus 912 INt~PG 917 (953)
||++++
T Consensus 837 iNpR~s 842 (1066)
T PRK05294 837 VNPRAS 842 (1066)
T ss_pred EecCCC
Confidence 999875
No 11
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.4e-54 Score=479.95 Aligned_cols=294 Identities=22% Similarity=0.311 Sum_probs=248.8
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
+++||+|||||.|+||+|||.||++|+++|++.||+|+.++++. .++. .
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~--~~~~------------------~----------- 50 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASG--KELV------------------A----------- 50 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCc--hhHH------------------H-----------
Confidence 36799999999999999999999999999999999998765432 1110 0
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
.....++|+|||++||..||||.+|++||.+||||+||++.++++|+||..+|++|+++|||||++..+.... ..
T Consensus 51 --~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~---~~ 125 (296)
T PRK14569 51 --KLLELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDKL---VA 125 (296)
T ss_pred --HhhccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchhh---hh
Confidence 0112379999999999999999999999999999999999999999999999999999999999998775321 00
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
...++||+||||+++|||+||++|++.+|+.++..+++. + +.+|||+||+| +|++|.|+++ ..
T Consensus 126 ---------~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~--~-~~~lvEefI~G-~E~tv~vl~~----~~ 188 (296)
T PRK14569 126 ---------EDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK--Y-GEVMIEQWVTG-KEITVAIVND----EV 188 (296)
T ss_pred ---------HhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh--c-CCEEEEccccc-EEEEEEEECC----cC
Confidence 123789999999999999999999999998877765432 3 47999999997 9999999952 11
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
+.. +.+.+ ...||+|..||... +.+.+|+.++++..+++++.|.+++++|||+|++||||++
T Consensus 189 ----~~~--~~i~~--------~~~~~~~~~k~~~~--~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~-- 250 (296)
T PRK14569 189 ----YSS--VWIEP--------QNEFYDYESKYSGK--SIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIY-- 250 (296)
T ss_pred ----cce--EEEec--------CCCcCChhhccCCC--cEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEE--
Confidence 111 12221 34689999999633 5678999999999999999999999999999999999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
+++|++||+||||+||||++|++|++|+++|++|++|+..||+.|
T Consensus 251 ---------------~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii~~a 295 (296)
T PRK14569 251 ---------------DDRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295 (296)
T ss_pred ---------------cCCCCEEEEEeeCCCCCCCcCHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999999999875
No 12
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=1.5e-54 Score=487.60 Aligned_cols=333 Identities=27% Similarity=0.371 Sum_probs=266.5
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.++||+|||||.|+||||||.||++|+.+|+. .+|+|++|+++++|.|...... ...+. +.
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~~~~~~~~~~g~~~~~~~~---------~~~~~--~~------ 62 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDK-EKYEVVPIGITKDGRWYLIDAD---------NMELA--DD------ 62 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcc-cCCEEEEEEECCCCCEeeccch---------hhhcc--cc------
Confidence 357899999999999999999999999999975 8999999999998777542100 00000 00
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
...+. .+. +.... .. ....+|+|||++||.+||
T Consensus 63 ----------~~~~~-----------------------~~~--~~~~~--------~~----~~~~~D~vf~~lhG~~ge 95 (333)
T PRK01966 63 ----------DNDKE-----------------------DLS--LLILP--------SG----GSEEVDVVFPVLHGPPGE 95 (333)
T ss_pred ----------ccccc-----------------------ccc--hhccc--------cc----cCccCCEEEEccCCCCCC
Confidence 00000 000 00000 00 001479999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+||||+|+++.++++||||..||++ |+++|||||++..+...+.. ...+..+.+.+ +||+||
T Consensus 96 dg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~----~~~~~~~~~~~-~~P~vV 167 (333)
T PRK01966 96 DGTIQGLLELLGIPYVGCGVLASALSMDKILTKRL---LAAAGIPVAPYVVLTRGDWE----EASLAEIEAKL-GLPVFV 167 (333)
T ss_pred CcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHcCCCCCCEEEEeccccc----hhhHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 99999999999988765421 01234455678 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++|||.||++|++.+||.. +++.++++ ++.+|||+||+|+
T Consensus 168 KP~~~gsS~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEefI~G~--------------- 210 (333)
T PRK01966 168 KPANLGSSVGISKVKNEEELAA---ALDLAFEY-------------------DRKVLVEQGIKGR--------------- 210 (333)
T ss_pred EeCCCCCccCEEEECCHHHHHH---HHHHHHhc-------------------CCcEEEEcCcCCE---------------
Confidence 9999999999999999998885 67777655 5789999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|+++++++. +.+..++....+||||++||..+.+...+|++ +++++.++++++|.+++++|
T Consensus 211 ----------E~~v~vl~~~~~---~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~aL 274 (333)
T PRK01966 211 ----------EIECAVLGNDPK---ASVPGEIVKPDDFYDYEAKYLDGSAELIIPAD---LSEELTEKIRELAIKAFKAL 274 (333)
T ss_pred ----------EEEEEEECCCCe---EcccEEEecCCceEcHHHccCCCCceEEeCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 999999997332 34445565555799999999877677788886 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
||+|++||||+++. +|++||+||||+||||+.|.++++|.++ |..| .+++++||+.|++
T Consensus 275 g~~G~~rvDf~~~~-~g~~~vlEiNt~Pg~t~~s~~p~~~~~~-G~~~-~~l~~~ii~~a~~ 333 (333)
T PRK01966 275 GCSGLARVDFFLTE-DGEIYLNEINTMPGFTPISMYPKLWEAS-GLSY-PELIDRLIELALE 333 (333)
T ss_pred CCcceEEEEEEEcC-CCCEEEEEeeCCCCCCcccHHHHHHHHc-CCCH-HHHHHHHHHHHhC
Confidence 99999999999985 6899999999999999999888777766 4455 6999999999873
No 13
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.7e-54 Score=489.44 Aligned_cols=343 Identities=23% Similarity=0.385 Sum_probs=264.8
Q ss_pred eEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhh
Q 002207 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 571 (953)
Q Consensus 492 ~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 571 (953)
+||+|||||.|+|||||+.||++|+.+|+. .+|+|.|+++++++.|...... ...|..... .....
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~v~~i~~~~~~~~~~~~~~---------~~~~~~~~~----~~~~~ 67 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHT-MGHSVKPILLTPDGGWVVPTVY---------RPSIPDESG----NSEDL 67 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhh-cCCEEEEEEECCCCCEeecccc---------ccccccccc----ccccc
Confidence 489999999999999999999999999975 8999999999998777632110 000100000 00000
Q ss_pred HHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCccH
Q 002207 572 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651 (953)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg~ 651 (953)
...++. +..+ +.. +.......+|+||+++||.+||||+
T Consensus 68 -----------------------~~~~~~---~~~~----~~~------------~~~~~~~~~d~~f~~~hg~~gEdg~ 105 (347)
T PRK14572 68 -----------------------FLEEFQ---KANG----VSE------------PADISQLDADIAFLGLHGGAGEDGR 105 (347)
T ss_pred -----------------------cccccc---cccc----ccc------------cccccccCcCEEEEecCCCCCCCcH
Confidence 000000 0000 000 0000112479999999999999999
Q ss_pred HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 002207 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731 (953)
Q Consensus 652 iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~ 731 (953)
||++||.+||||+|+++.++++||||..||++ |+++|||||+++.+.+.++... ..+... ..+++ +||+||||+
T Consensus 106 iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~---l~~~GI~~p~~~~~~~~~~~~~-~~~~~~-~~~~l-~~PvvVKP~ 179 (347)
T PRK14572 106 IQGFLDTLGIPYTGSGVLASALAMDKTRANQI---FLQSGQKVAPFFELEKLKYLNS-PRKTLL-KLESL-GFPQFLKPV 179 (347)
T ss_pred HHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHH---HHHcCCCCCCEEEEEccccccC-hHHHHH-HHHhc-CCCEEEecC
Confidence 99999999999999999999999999999999 9999999999999876543221 111122 23568 699999999
Q ss_pred CCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhh
Q 002207 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811 (953)
Q Consensus 732 ~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~ 811 (953)
++|+|.||++|++.++|.. +++.++.+ ++.+|||+||+|+
T Consensus 180 ~ggsS~GV~~v~~~~el~~---a~~~~~~~-------------------~~~vlVEefI~G~------------------ 219 (347)
T PRK14572 180 EGGSSVSTYKITNAEQLMT---LLALIFES-------------------DSKVMSQSFLSGT------------------ 219 (347)
T ss_pred CCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCCEEEEcCcccE------------------
Confidence 9999999999999999875 66666654 5789999999997
Q ss_pred cCCCceeEEEEEEEcCC--CC-ceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 812 KGNSRWVEITVGVIGKC--GS-MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 812 ~g~~~~~Eitv~vl~~~--~~-~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|+|+++. +. .....|..++...++||+|++||..+....++|++ +++++.++++++|.+++++|
T Consensus 220 -------E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~~L 289 (347)
T PRK14572 220 -------EVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR---ISDQEMKRVQELAIRAHESL 289 (347)
T ss_pred -------EEEEEEEeCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999742 22 12234555666667899999999987777788987 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
||+|++|||||++ +|++||+||||+||||+.|.++++|.+++ ..| .+|+++||+.|++
T Consensus 290 g~~G~~rvD~~~~--~~~~~vlEiNt~PG~t~~S~~p~~~~~~G-~~~-~~l~~~ii~~a~~ 347 (347)
T PRK14572 290 GCKGYSRTDFIIV--DGEPHILETNTLPGMTETSLIPQQAKAAG-INM-EEVFTDLIEIGLK 347 (347)
T ss_pred CCcceeEEEEEEE--CCcEEEEeeeCCCCCCcccHHHHHHHHcC-CCH-HHHHHHHHHHHhC
Confidence 9999999999997 47899999999999999998888888774 344 7999999999874
No 14
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3.2e-51 Score=518.86 Aligned_cols=627 Identities=16% Similarity=0.177 Sum_probs=425.8
Q ss_pred cCeEEEEecCCC-----CchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGPS-----AERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~S-----~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+||+||++ +|+|+| |.+++++|++.||+|+.++.++. .+..++ ...+ ..+.++..
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~s---g~q~~~aL~e~G~~vi~v~~np~--~~~~d~------~~ad-~~y~ep~~---- 70 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYS---GTQACLALKEEGYQVVLVNPNPA--TIMTDP------APAD-TVYFEPLT---- 70 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhH---HHHHHHHHHHcCCEEEEEeCCcc--hhhcCc------ccCC-eeEECCCC----
Confidence 369999999876 899994 99999999999999988764432 111110 0111 11222211
Q ss_pred cchhHHHh-hccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe
Q 002207 152 SLSEFAEH-LAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL 226 (953)
Q Consensus 152 ~~~~~~~~-~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~ 226 (953)
...+.+. .++++|+|+|.+||..+.+..+ ++.|+.+|++++|+++.++.++.||..+|++|+++|||+|++..+
T Consensus 71 -~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v 149 (1068)
T PRK12815 71 -VEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIV 149 (1068)
T ss_pred -HHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceee
Confidence 1111111 2358999999999999988765 578999999999999999999999999999999999999999998
Q ss_pred cCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEE
Q 002207 227 QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306 (953)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~V 306 (953)
.+.++ +.++.+ .++||+||||+.+++|.|+.+|+|.+|+.+.+.+.+......++|||+||+|++|+++.|
T Consensus 150 ~s~ee----~~~~~~-----~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~~E~sv~v 220 (1068)
T PRK12815 150 TSVEE----ALAFAE-----KIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGWKEIEYEV 220 (1068)
T ss_pred CCHHH----HHHHHH-----HcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCCeEEEEEE
Confidence 76432 333332 368899999999999999999999999887776665433346899999999978999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCC
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCD 385 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G 385 (953)
+++.+|+ .+.+++.| .++..... .+ .+....|+ .++++..++++++|.+++++||+.|
T Consensus 221 ~rD~~g~---~~~~~~~e----------------~~~p~gi~-tG-~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G 279 (1068)
T PRK12815 221 MRDRNGN---CITVCNME----------------NIDPVGIH-TG-DSIVVAPSQTLTDDEYQMLRSASLKIISALGVVG 279 (1068)
T ss_pred EEcCCCC---EEEEEece----------------eccccccc-CC-ceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 9865432 33333221 11111111 12 24456788 4899999999999999999999999
Q ss_pred eeEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH-------------
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI------------- 451 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l------------- 451 (953)
.++|||++ ++ +|++||+||||+++ .++.+. .+++|+++.++..++
T Consensus 280 ~~~vef~l-----------------~~~~g~~~ViEINPR~~--~s~~l~--~~atG~pl~~~~~~~alG~~l~ei~~~i 338 (1068)
T PRK12815 280 GCNIQFAL-----------------DPKSKQYYLIEVNPRVS--RSSALA--SKATGYPIAKIAAKLAVGYTLNELKNPV 338 (1068)
T ss_pred ceEEEEEE-----------------ECCCCcEEEEEEecCcc--cchhhh--hHhhCCcHHHHHHHHHcCCChHHhcCCc
Confidence 99999987 44 47899999997765 444332 123444433332222
Q ss_pred HHHHhhhC-CCC--------CCCCCc---------------c--eec---------------------------------
Q 002207 452 IGHACSRF-PNL--------ASYNSV---------------S--SHL--------------------------------- 472 (953)
Q Consensus 452 i~~a~~r~-~~~--------~~~~~~---------------~--~~~--------------------------------- 472 (953)
+......+ +.+ +|++.. | |.+
T Consensus 339 ~g~~~a~~ep~~d~~~~k~p~~~f~~y~~~~~~~g~kmks~G~v~~ig~~~eea~~ka~~~~~~~~~~~~~~~~~~~~~~ 418 (1068)
T PRK12815 339 TGLTYASFEPALDYVVVKFPRWPFDKFGYADRTLGTQMKATGEVMAIGRNFESAFQKALRSLEIKRNGLSLPIELSGKSD 418 (1068)
T ss_pred cCCcccccCCccceEEEEeccCccccccCccccccceecccceEEEecCCHHHHHHHHHHhhcCCCCCCCCccccccCCH
Confidence 11100000 000 111100 0 000
Q ss_pred ---------------------------------------------------ccccccC----CCc---------------
Q 002207 473 ---------------------------------------------------PGRSSGS----KPT--------------- 482 (953)
Q Consensus 473 ---------------------------------------------------~~~~~~~----~~~--------------- 482 (953)
++.+... ..+
T Consensus 419 ~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~gfsd~~i 498 (1068)
T PRK12815 419 EELLQDLRHPDDRRLFALLEALRRGITYEEIHELTKIDPFFLQKFEHIVALEKKLAEDGLDLSADLLRKVKEKGFSDALL 498 (1068)
T ss_pred HHHHHHhccCCCChHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCccCCHHHHHHHHHcCCCHHHH
Confidence 1111000 000
Q ss_pred -----------------------------------------------cccccCC-CceEEEEecCCC-----cccceecc
Q 002207 483 -----------------------------------------------EALNKRE-GIREVFVIFGGD-----TSERQVSL 509 (953)
Q Consensus 483 -----------------------------------------------~~~~~~~-~~~~v~vl~GG~-----s~E~~vS~ 509 (953)
++..... .++||.||.+|. +.|.|.++
T Consensus 499 a~~~~~~~~~v~~~r~~~~~~p~~k~vd~~a~ef~~~t~~~y~ty~~~~~~~~~~~~kkvLIlG~G~~rig~~~efdy~~ 578 (1068)
T PRK12815 499 AELTGVTEEEVRALRKKLGIRPSYKMVDTCAAEFEAKTPYYYSTYFGESEAEPSSEKKKVLILGSGPIRIGQGIEFDYSS 578 (1068)
T ss_pred HHHhCcCHHHHHHHHHHCCCeeEEEEecCCcCcccCCCCceeeeCCCCCcCccCCCCceEEEecccccccccccccchhH
Confidence 1111112 567888877753 57888777
Q ss_pred ccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCcccccccc
Q 002207 510 MSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTS 589 (953)
Q Consensus 510 ~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (953)
+.+. .+|+. .+|+++.+.-+|+. .+.+ ....+..+..
T Consensus 579 v~~~---~aLk~-~G~~vI~vn~npet--vs~~-------~~~aD~~y~e------------------------------ 615 (1068)
T PRK12815 579 VHAA---FALKK-EGYETIMINNNPET--VSTD-------YDTADRLYFE------------------------------ 615 (1068)
T ss_pred HHHH---HHHHH-cCCEEEEEeCCccc--cccc-------cccCceEEEc------------------------------
Confidence 6664 55654 57877755444321 0000 0001111111
Q ss_pred ccccceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCCh
Q 002207 590 HLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGV 668 (953)
Q Consensus 590 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~ 668 (953)
+.+.+.+++. .++++|.|++.+.|... -.+...|+.+|+|+.|+++
T Consensus 616 -------------------------------p~~~e~vl~I~~~e~~dgVI~~~g~~~~--~~la~~le~~Gi~ilG~s~ 662 (1068)
T PRK12815 616 -------------------------------PLTLEDVLNVAEAENIKGVIVQFGGQTA--INLAKGLEEAGLTILGTSP 662 (1068)
T ss_pred -------------------------------cCCHHHHHHHHhhcCCCEEEEecCcHHH--HHHHHHHHHCCCeEECCcH
Confidence 1122333333 34678999998877643 2567788999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccH
Q 002207 669 MASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748 (953)
Q Consensus 669 ~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL 748 (953)
.+...|.||..++++ |+++|||+|++..+.+.+ .+.++.+.+ +||+||||+.+++|.|+.+|++.++|
T Consensus 663 e~i~~~~DK~~f~~l---l~~~GIp~P~~~~~~s~e--------e~~~~~~~i-gyPvVVKP~~~~Gg~gv~iv~~~eeL 730 (1068)
T PRK12815 663 DTIDRLEDRDRFYQL---LDELGLPHVPGLTATDEE--------EAFAFAKRI-GYPVLIRPSYVIGGQGMAVVYDEPAL 730 (1068)
T ss_pred HHHHHHcCHHHHHHH---HHHcCcCCCCeEEeCCHH--------HHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHH
Confidence 999999999999999 999999999999886532 234456778 69999999999999999999999998
Q ss_pred HHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 749 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 749 ~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
..+ ++.+... ..++|||+||+|. |+++.++.++
T Consensus 731 ~~~---l~~~~s~-------------------~~~vlIeefI~G~-------------------------E~~Vd~i~dg 763 (1068)
T PRK12815 731 EAY---LAENASQ-------------------LYPILIDQFIDGK-------------------------EYEVDAISDG 763 (1068)
T ss_pred HHH---HHHhhcC-------------------CCCEEEEEeecCc-------------------------eEEEEEEEcC
Confidence 864 4443211 5789999999997 9999999875
Q ss_pred CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEE
Q 002207 829 GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 908 (953)
Q Consensus 829 ~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~ 908 (953)
+.. .+.+.++.....+ .+.|.+..+.|+. .++++..+++++.+.+++++||+.|+.+|||+++ +|++|
T Consensus 764 ~~v-~i~~i~e~~e~~g-------v~sGds~~v~pp~--~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~--~~~~y 831 (1068)
T PRK12815 764 EDV-TIPGIIEHIEQAG-------VHSGDSIAVLPPQ--SLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLA--NDEIY 831 (1068)
T ss_pred Cce-EEeeEEEEeeccC-------CcCCCeeEEECCC--CCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEE--CCcEE
Confidence 443 2333333222111 2334455566654 2788999999999999999999999999999998 47899
Q ss_pred EEeeCCCCCC
Q 002207 909 IIEVNTVPGM 918 (953)
Q Consensus 909 viEINt~PGl 918 (953)
++|||++++-
T Consensus 832 viEiNpR~s~ 841 (1068)
T PRK12815 832 VLEVNPRASR 841 (1068)
T ss_pred EEEEeCCCCc
Confidence 9999998874
No 15
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-53 Score=467.98 Aligned_cols=315 Identities=27% Similarity=0.354 Sum_probs=271.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+|++||.|+||+||+.||.+++++|+..+|++..++++.++.|......+
T Consensus 2 ~~~vavl~gG~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 55 (317)
T COG1181 2 KMKVAVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVT-------------------------- 55 (317)
T ss_pred ceEEEEeeCCccccceEEEecHHHHHHHHhhcCceeEEEeccccceEEeccccc--------------------------
Confidence 579999999999999999999999999999999999999999988886422100
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
.....++|++||.+||.+||||++|++|+.+|+||||+++.+++.+|||..+|++++..|+|++++..+...+......
T Consensus 56 -~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~ 134 (317)
T COG1181 56 -KRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIV 134 (317)
T ss_pred -hhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHHH
Confidence 0112379999999999999999999999999999999999999999999999999999999999999998654311111
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
++.. ..++||+||||++.|||+|+++|++.+|+......++ .+++++|+|+|+.| +|++|++++ +...
T Consensus 135 e~~~-----~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~--~~d~~vl~e~~~~~-rei~v~vl~----~~~~ 202 (317)
T COG1181 135 EEVE-----EGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAF--KYDRDVLREQGITG-REIEVGVLG----NDYE 202 (317)
T ss_pred HHhh-----cccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHH--HhCCceeeccCCCc-ceEEEEecC----Cccc
Confidence 2221 3478999999999999999999999998776444443 48999999999996 999999995 3225
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
+.+++++||... ...||||++||..++.+.+.+|+.+++++.++++++|.+++++|||+|++|+|||+.
T Consensus 203 ~~~l~~~eI~~~---------~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~-- 271 (317)
T COG1181 203 EQALPLGEIPPK---------GEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVD-- 271 (317)
T ss_pred ceecCceEEecC---------CCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEE--
Confidence 678888887531 368999999999966688999999999999999999999999999999999999873
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
+++|++|++||||+||||++|+||++|++.|++|.+|+..+++.|
T Consensus 272 --------------~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~~~e~a 316 (317)
T COG1181 272 --------------DDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLRFVELA 316 (317)
T ss_pred --------------CCCCCEEEEEEeCCCCCcccccchhhHHHcCCCHHHHHHHHHhhc
Confidence 236899999999999999999999999999999999999999875
No 16
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=3.7e-53 Score=527.16 Aligned_cols=339 Identities=24% Similarity=0.291 Sum_probs=267.6
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
+.++||+|||||.|+||||||.||++|+.+|+. .+|+|++|+|+++|.|...... ..|..
T Consensus 449 ~~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~-~~~~v~~~~i~~~g~~~~~~~~----------~~~~~--------- 508 (809)
T PRK14573 449 PKKLSLGLVCGGKSCEHDISLLSAKNIAKYLSP-EFYDVSYFLINRQGLWETVSSL----------ETAIE--------- 508 (809)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCcEEEEEEECCCCeEEecccc----------ccccc---------
Confidence 457899999999999999999999999999975 8999999999987655421000 00000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
. .+. ... +. .+.. .....+|+|||++||.+||
T Consensus 509 ----------~-~~~-------------------------~~~----------~~-~~~~-~~~~~~d~vf~~lhG~~ge 540 (809)
T PRK14573 509 ----------E-DSG-------------------------KSV----------LS-SEIA-QALAKVDVVLPILHGPFGE 540 (809)
T ss_pred ----------c-ccc-------------------------ccc----------cc-hhhh-hccccCCEEEEcCCCCCCC
Confidence 0 000 000 00 0000 0113579999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||+||++||.+||||+||++.++++||||..+|++ |+++|||||+|..+...++... ....+.++.+++ +||+||
T Consensus 541 dg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~---l~~~GIpt~~~~~~~~~~~~~~-~~~~~~~~~~~l-g~P~iV 615 (809)
T PRK14573 541 DGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRF---ASDVGVPVVPYQPLTLAGWKRE-PELCLAHIVEAF-SFPMFV 615 (809)
T ss_pred ChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHH---HHHCCCCCCCEEEEechhcccC-hHHHHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 9999999999999876443221 122234556788 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++|||+||++|++.+||.. +++.++.+ ++.+|||+||.|.
T Consensus 616 KP~~~GsS~Gv~~v~~~~el~~---a~~~a~~~-------------------~~~vlVEe~i~~g--------------- 658 (809)
T PRK14573 616 KTAHLGSSIGVFEVHNVEELRD---KISEAFLY-------------------DTDVFVEESRLGS--------------- 658 (809)
T ss_pred eeCCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCcEEEEeccCCC---------------
Confidence 9999999999999999999885 78877765 5789999998762
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCcccccccccc-CCC--ceeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ-GGT--GINLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~-~g~--~~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
+|++|+|+++......+.+..++....+||||++||. .+. ....+|++ +++++.++++++|.+++
T Consensus 659 ---------rEi~v~vl~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~ 726 (809)
T PRK14573 659 ---------REIEVSCLGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD---LSKESQEQVLELAERIY 726 (809)
T ss_pred ---------EEEEEEEEeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC---CCHHHHHHHHHHHHHHH
Confidence 4999999997654333334455555567999999995 333 23345766 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
++|||+|++|||||++. +|++|||||||+||||+.|.+|++|.++ |..| .+|+++||+.|++|+
T Consensus 727 ~aLg~~G~~riDf~v~~-~g~~yv~EiNt~PG~t~~s~~p~~~~~~-G~~~-~~li~~ii~~a~~r~ 790 (809)
T PRK14573 727 RLLQGKGSCRIDFFLDE-EGNFWLSEMNPIPGMTEASPFLTAFVRK-GWTY-EQIVHQLIIDGLHKF 790 (809)
T ss_pred HHhCCceEEEEEEEEcC-CCCEEEEEeeCCCCCCcccHHHHHHHHc-CCCH-HHHHHHHHHHHHHHh
Confidence 99999999999999985 6899999999999999999888887666 4556 699999999999885
No 17
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=3.5e-52 Score=462.18 Aligned_cols=298 Identities=27% Similarity=0.366 Sum_probs=254.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
|||+|||||.|+||+|||.||++++++|++.||+|..++++.+ +.. . .
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~--~~~-----------------------------~-~ 48 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDED--FLK-----------------------------K-V 48 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCch--HHH-----------------------------H-h
Confidence 5899999999999999999999999999999999998876442 100 0 0
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
.. ..++|+|||.+||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+ +|||||++..+.... ..
T Consensus 49 ~~-~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~~~~~~----~~- 121 (299)
T PRK14571 49 DQ-LKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVEIKEFM----KT- 121 (299)
T ss_pred hh-ccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEEEechh----hh-
Confidence 00 126999999999999999999999999999999999999999999999999998 589999998875321 00
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
..++||+||||+.+|||+||.+|+|.+|+.+.+.+.+. .++.+|||+||+| +|++|.+++++ +..
T Consensus 122 --------~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~--~~~~vlVEeyI~G-~E~sv~vl~~~----~~~ 186 (299)
T PRK14571 122 --------SPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLP--RYGSVIVQEYIPG-REMTVSILETE----KGF 186 (299)
T ss_pred --------hhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHh--hCCcEEEEccccc-eEEEEEEEcCC----CCe
Confidence 23689999999999999999999999998877765543 4568999999997 99999999632 234
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCC
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~ 397 (953)
.++++.|+.. ...+|+|..||..+. +.+.+|+.+++++.++|++.|.+++++|||+|++||||++
T Consensus 187 ~vl~~~e~~~----------~~~~~~~~~k~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~---- 251 (299)
T PRK14571 187 EVLPILELRP----------KRRFYDYVAKYTKGE-TEFILPAPLNPEEERLVKETALKAFVEAGCRGFGRVDGIF---- 251 (299)
T ss_pred eeeceEEEec----------CCCccccccccCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE----
Confidence 5666665542 345889999997654 6677899999999999999999999999999999999976
Q ss_pred CccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 398 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 398 ~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+ +|++||+|||++|||+++|.+|++|++.|++|.+|+..||+.|++|
T Consensus 252 -------------~-~~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii~~a~~~ 298 (299)
T PRK14571 252 -------------S-DGRFYFLEINTVPGLTELSDLPASAKAGGIEFEELVDIIIKSAFLK 298 (299)
T ss_pred -------------E-CCcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3 5789999999999999999999999999999999999999999865
No 18
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=5.1e-51 Score=451.51 Aligned_cols=295 Identities=23% Similarity=0.344 Sum_probs=244.5
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|+++||+||+||.|+||+||+.||++|..+|++ .+|+++++.++. .|.+
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~~~---------------------~~~~--------- 49 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDASG---------------------KELV--------- 49 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcCCc---------------------hhHH---------
Confidence 357899999999999999999999999999975 899998663311 0100
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
. .+ ....+|+||+++||..||
T Consensus 50 -~--------~l--------------------------------------------------~~~~~d~vf~~lhG~~ge 70 (296)
T PRK14569 50 -A--------KL--------------------------------------------------LELKPDKCFVALHGEDGE 70 (296)
T ss_pred -H--------Hh--------------------------------------------------hccCCCEEEEeCCCCCCC
Confidence 0 00 011369999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+||||+||++.++++||||..||++ |+++|||||++..+.... ...+.+ +||+||
T Consensus 71 ~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~---l~~~gIptp~~~~~~~~~-----------~~~~~~-~~P~vV 135 (296)
T PRK14569 71 NGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEI---LMHHRMPTPMAKFLTDKL-----------VAEDEI-SFPVAV 135 (296)
T ss_pred ChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCeEEEchhh-----------hhHhhc-CCCEEE
Confidence 99999999999999999999999999999999999 999999999998775321 113567 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++|+|.||++|++.+||.. +++.++.+ +.+|||+||+|+
T Consensus 136 KP~~ggss~Gv~~v~~~~eL~~---a~~~~~~~--------------------~~~lvEefI~G~--------------- 177 (296)
T PRK14569 136 KPSSGGSSIATFKVKSIQELKH---AYEEASKY--------------------GEVMIEQWVTGK--------------- 177 (296)
T ss_pred EeCCCCCCcCeEEcCCHHHHHH---HHHHHHhc--------------------CCEEEEcccccE---------------
Confidence 9999999999999999999885 56665432 469999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|+++++. ..+.+++.+...+|+|+.||. +.+...+|+. ++++..+++++.|++++++|
T Consensus 178 ----------E~tv~vl~~~-----~~~~~~i~~~~~~~~~~~k~~-~~~~~~~P~~---l~~~~~~~i~~~a~~~~~~L 238 (296)
T PRK14569 178 ----------EITVAIVNDE-----VYSSVWIEPQNEFYDYESKYS-GKSIYHSPSG---LCEQKELEVRQLAKKAYDLL 238 (296)
T ss_pred ----------EEEEEEECCc-----CcceEEEecCCCcCChhhccC-CCcEEEeCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999764 223445555567999999996 4456667876 57888899999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
||+|++||||+++. +|++|||||||+||||+.|.++.+|.++ |..| .+|+.+||+.|
T Consensus 239 g~~G~~rvD~~~~~-~g~~~vlEIN~~Pg~t~~s~~~~~~~~~-G~~~-~~li~~ii~~a 295 (296)
T PRK14569 239 GCSGHARVDFIYDD-RGNFYIMEINSSPGMTDNSLSPKSAAAE-GVDF-DSFVKRIIEQA 295 (296)
T ss_pred CCceEEEEEEEEcC-CCCEEEEEeeCCCCCCCcCHHHHHHHHc-CCCH-HHHHHHHHHhc
Confidence 99999999999985 6899999999999999999888877766 4456 69999999876
No 19
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-50 Score=446.30 Aligned_cols=313 Identities=31% Similarity=0.426 Sum_probs=266.8
Q ss_pred ceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchh
Q 002207 491 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 570 (953)
Q Consensus 491 ~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 570 (953)
+.+|+|++||.|.||+||+.||.+|+.+|+. .+|+++++.+++++. |.+...
T Consensus 2 ~~~vavl~gG~s~e~eVsl~sa~~v~~~l~~-~~~~~~~~~~~~~~~-------------------~~~~~~-------- 53 (317)
T COG1181 2 KMKVAVLLGGRSAEREVSLLSAKAVLRALKG-FGYDVTPVDITEAGL-------------------WMLDKE-------- 53 (317)
T ss_pred ceEEEEeeCCccccceEEEecHHHHHHHHhh-cCceeEEEeccccce-------------------EEeccc--------
Confidence 5789999999999999999999999999976 899999999988643 432110
Q ss_pred hHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCcc
Q 002207 571 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDG 650 (953)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg 650 (953)
. + + ....++|+|||.+||.+||||
T Consensus 54 -~---------~----------------------~------------------------~~~~~~~vvfp~lhG~~gEDg 77 (317)
T COG1181 54 -V---------T----------------------K------------------------RVLQKADVVFPVLHGPYGEDG 77 (317)
T ss_pred -c---------c----------------------h------------------------hhcccCCEEEEeCCCCCCCCc
Confidence 0 0 0 011235899999999999999
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
++|++||.+|+||||+++.+|+.+|||..+|++ ++..|+|++++..+...++. ...+++....+ +||+||||
T Consensus 78 ~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~---~~~~g~~~a~~~~~~~~~~~----~~~~e~~~~~l-~~p~~Vkp 149 (317)
T COG1181 78 TIQGLLELLGIPYVGKGVLASAGAMDKIVTKRL---FKAEGLPVAPYVALTRDEYS----SVIVEEVEEGL-GFPLFVKP 149 (317)
T ss_pred hHHHHHHHhCCCEecCchhhhhhcccHHHHHHH---HHHCCCCccceeeeecccch----hHHHHHhhccc-CCCEEEEc
Confidence 999999999999999999999999999999999 89999999999999876541 23355667788 69999999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
++.|||.|++++++..|+.. +++.++++ ++++|+|+|+.|+
T Consensus 150 ~~~gSSvg~~~v~~~~d~~~---~~e~a~~~-------------------d~~vl~e~~~~~r----------------- 190 (317)
T COG1181 150 AREGSSVGRSPVNVEGDLQS---ALELAFKY-------------------DRDVLREQGITGR----------------- 190 (317)
T ss_pred CCccceeeEEEeeeccchHH---HHHHHHHh-------------------CCceeeccCCCcc-----------------
Confidence 99999999999999999986 78888877 7899999999987
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecC-CccccccccccC-CCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES-GDILSLEEKFQG-GTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~-~~~~d~~~Ky~~-g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|+++++.... ...+..++... ..||||++||.. |.+...+|++ +++++.++++++|.+++++|
T Consensus 191 --------ei~v~vl~~~~~~-~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~---lt~~~~~~i~~lA~~a~~al 258 (317)
T COG1181 191 --------EIEVGVLGNDYEE-QALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAG---LTDEIHEEIKELALRAYKAL 258 (317)
T ss_pred --------eEEEEecCCcccc-eecCceEEecCCCeEEeeeccccCCCCceeeCCCC---CCHHHHHHHHHHHHHHHHhc
Confidence 9999999986633 34455566655 689999999998 6667788886 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
||.|++|+|||+++++|++|+|||||+||||++|.+|+++.+.+ ..| .+|+.+++++|
T Consensus 259 g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~g-i~~-~~L~~~~~e~a 316 (317)
T COG1181 259 GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAG-ISF-AILVLRFVELA 316 (317)
T ss_pred CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhhHHHcC-CCH-HHHHHHHHhhc
Confidence 99999999999995358999999999999999998888888775 355 58888888876
No 20
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=5.8e-48 Score=428.43 Aligned_cols=298 Identities=27% Similarity=0.369 Sum_probs=249.6
Q ss_pred eEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhh
Q 002207 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 571 (953)
Q Consensus 492 ~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 571 (953)
+||+|||||.|+||+|||.||.+|..+|++ .+|++.++.++++ |
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~~---------------------~-------------- 44 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEK-LGYEVTVFDVDED---------------------F-------------- 44 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHH-cCCeEEEEccCch---------------------H--------------
Confidence 479999999999999999999999999975 7999988754221 0
Q ss_pred HHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCccH
Q 002207 572 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651 (953)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg~ 651 (953)
.. .+ . ...++|+||+++||.+||||.
T Consensus 45 -~~----~~-----------------------~--------------------------~~~~~D~v~~~~~g~~ge~~~ 70 (299)
T PRK14571 45 -LK----KV-----------------------D--------------------------QLKSFDVVFNVLHGTFGEDGT 70 (299)
T ss_pred -HH----Hh-----------------------h--------------------------hccCCCEEEEeCCCCCCCccH
Confidence 00 00 0 011369999999999999999
Q ss_pred HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 002207 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731 (953)
Q Consensus 652 iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~ 731 (953)
+|++||.+|+||+|+++.++++|+||..||++ |+ +|||||++..+.... ....+ +||+||||+
T Consensus 71 ~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~---l~-~~ip~p~~~~~~~~~------------~~~~l-~~P~vvKP~ 133 (299)
T PRK14571 71 LQAILDFLGIRYTGSDAFSSMICFDKLLTYRF---LK-GTVEIPDFVEIKEFM------------KTSPL-GYPCVVKPR 133 (299)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHcCHHHHHHH---Hh-cCCCCCCEEEEechh------------hhhhc-CCCEEEecC
Confidence 99999999999999999999999999999998 77 589999998875321 12457 699999999
Q ss_pred CCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhh
Q 002207 732 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 811 (953)
Q Consensus 732 ~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~ 811 (953)
.+++|.||.+|++.+||.+ +++..+.. .+.+||||||+|+
T Consensus 134 ~g~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~vlVEeyI~G~------------------ 173 (299)
T PRK14571 134 REGSSIGVFICESDEEFQH---ALKEDLPR-------------------YGSVIVQEYIPGR------------------ 173 (299)
T ss_pred CCCCcCCEEEECCHHHHHH---HHHHHHhh-------------------CCcEEEEccccce------------------
Confidence 9999999999999999875 55555433 4579999999997
Q ss_pred cCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 002207 812 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 891 (953)
Q Consensus 812 ~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~ 891 (953)
|++|+++++++... +.|..++.....+|+|+.||..+.+...+|++ +++++.+++++.+.+++++|||+
T Consensus 174 -------E~sv~vl~~~~~~~-vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p~~---l~~~~~~~i~~~a~~~~~~lg~~ 242 (299)
T PRK14571 174 -------EMTVSILETEKGFE-VLPILELRPKRRFYDYVAKYTKGETEFILPAP---LNPEEERLVKETALKAFVEAGCR 242 (299)
T ss_pred -------EEEEEEEcCCCCee-eeceEEEecCCCccccccccCCCCeeEEeCCC---CCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999866543 45556666666799999999887777778876 68999999999999999999999
Q ss_pred ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 892 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 892 G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
|++||||+++ +|++||+||||+||||+.|.++.+|.++ |..| .+|+.+||+.|++|
T Consensus 243 g~~rvD~~~~--~~~~~viEiN~~Pg~~~~s~~~~~~~~~-G~~~-~~li~~ii~~a~~~ 298 (299)
T PRK14571 243 GFGRVDGIFS--DGRFYFLEINTVPGLTELSDLPASAKAG-GIEF-EELVDIIIKSAFLK 298 (299)
T ss_pred ceEEEEEEEE--CCcEEEEEeeCCCCCCccCHHHHHHHHc-CCCH-HHHHHHHHHHHHhc
Confidence 9999999997 5789999999999999999888888765 4566 69999999999876
No 21
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=100.00 E-value=4.9e-48 Score=432.26 Aligned_cols=313 Identities=30% Similarity=0.438 Sum_probs=254.8
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+|||||.|.||++|+.|+.+++++|++.||+|+++++++++.|... ++...+.. . .
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~-----------~~~~~~~~----------~-~ 58 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWTYK-----------DLPQLILE----------L-G 58 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecCCcccccc-----------chHHHHhh----------c-c
Confidence 699999999999999999999999999999999999999887654210 00000000 0 0
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec-CCccchhh-h
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ-GSEVNESE-L 236 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~-~~~~~~~~-~ 236 (953)
....++|+|||++||..|||+.+|++||.+|+||+|+++.++.+|+||..++++|+++|||+|++..+. ..+..... .
T Consensus 59 ~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~ 138 (315)
T TIGR01205 59 ALLEGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELEC 138 (315)
T ss_pred ccCCCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhH
Confidence 011379999999999999999999999999999999999999999999999999999999999999887 32211100 0
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
..+. ..++||+||||..+++|.||.+++|.+++.+.+...+ .++..+|||+||+| +|++|.+++++ ...
T Consensus 139 ~~~~-----~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~i~G-~e~~v~vi~~~---~~~ 207 (315)
T TIGR01205 139 EQVA-----EPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAF--EYDEEVLVEQFIKG-RELEVSILGNE---EAL 207 (315)
T ss_pred HHHH-----HhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHH--hcCCcEEEEcCCCC-EEEEEEEECCC---Ccc
Confidence 1111 2368999999999999999999999999887766554 36678999999997 99999999521 111
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
+++..+.+ ...+|+|..||..+. +.+.+|+.+++++.++|++.|.+++++||++|++||||++
T Consensus 208 ~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~--- 270 (315)
T TIGR01205 208 PIIEIVPE-------------IEGFYDYEAKYLDGS-TEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFL--- 270 (315)
T ss_pred ceEEecCC-------------CCCeeCcccccCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE---
Confidence 22211111 123788999998665 6677899999999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
+++|++||+|||++|||+++|++|++++++|++|.+++..||+.|
T Consensus 271 --------------~~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ii~~~ 315 (315)
T TIGR01205 271 --------------DEEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLVERILELA 315 (315)
T ss_pred --------------eCCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 567899999999999999999999999999999999999999864
No 22
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=1.4e-45 Score=410.43 Aligned_cols=300 Identities=30% Similarity=0.400 Sum_probs=256.0
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+|+|||.|+||++||.|++++.+||++.||+|++++.+.+. .. .
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~-----------------~~---------------~ 51 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDI-----------------AA---------------Q 51 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcch-----------------HH---------------H
Confidence 469999999999999999999999999999999999988654320 00 0
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
. ...++|+||+.+||.+|+|+.++++||.+|+||+|++..++++|+||..+|++|+++|||+|++..+.+.+. +
T Consensus 52 ~--~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~----~ 125 (304)
T PRK01372 52 L--KELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTREED----L 125 (304)
T ss_pred h--ccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCcch----H
Confidence 0 023799999999999999999999999999999999999999999999999999999999999999877543 1
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
.... +.++||+||||..+++|.||.++++.+|+.+.+.+.. .++..+|||+||+| +|++|.++++ .
T Consensus 126 ~~~~-----~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~--~~~~~~lvEe~i~G-~E~~v~vi~~----~-- 191 (304)
T PRK01372 126 LAAI-----DKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAF--KYDDEVLVEKYIKG-RELTVAVLGG----K-- 191 (304)
T ss_pred HHHH-----hhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCcEEEEcccCC-EEEEEEEECC----C--
Confidence 2222 2368899999999999999999999999877665543 35778999999997 9999999952 1
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.+++.++.. ..++++|..||..+. ....+|+.++++..+++++++.+++++||++|++||||++
T Consensus 192 --~~~~~~~~~----------~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~--- 255 (304)
T PRK01372 192 --ALPVIEIVP----------AGEFYDYEAKYLAGG-TQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFML--- 255 (304)
T ss_pred --ccceEEEEe----------cCCEEeeeccccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEE---
Confidence 122223321 345889999997665 5677888899999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++|++||+|||++|||+++|.+|.+++.+|++|.+++..||+.|+.|
T Consensus 256 --------------~~~g~~~viEvN~~p~~~~~~~~~~~~~~~g~~~~~~~~~ii~~a~~~ 303 (304)
T PRK01372 256 --------------DEDGKPYLLEVNTQPGMTSHSLVPMAARAAGISFSELVDRILEDALCD 303 (304)
T ss_pred --------------cCCCCEEEEEecCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 567899999999999999999999999999999999999999999876
No 23
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=100.00 E-value=1.2e-43 Score=396.96 Aligned_cols=312 Identities=31% Similarity=0.492 Sum_probs=248.8
Q ss_pred EEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhH
Q 002207 493 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 572 (953)
Q Consensus 493 ~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 572 (953)
||+|+|||.|.||+||+.|+..|.++|++ .+|++++|.+.+.+.|. . . +.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~-~g~~v~~i~~~~~~~~~-------------------~-~---------~~ 50 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRD-LGYDVYPVDIDKMGSWT-------------------Y-K---------DL 50 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhh-cCCEEEEEeecCCcccc-------------------c-c---------ch
Confidence 69999999999999999999999999975 79999999887653221 0 0 00
Q ss_pred HHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCccHH
Q 002207 573 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTL 652 (953)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg~i 652 (953)
.+ . +. . . . . ....+|+|||++||..|||+++
T Consensus 51 ~~-~---~~-----------------------~---~-~----~--------------~~~~~D~v~~~~~g~~~~~~~~ 81 (315)
T TIGR01205 51 PQ-L---IL-----------------------E---L-G----A--------------LLEGIDVVFPVLHGRYGEDGTI 81 (315)
T ss_pred HH-H---Hh-----------------------h---c-c----c--------------cCCCCCEEEEecCCCCCCCcHH
Confidence 00 0 00 0 0 0 0 0124799999999999999999
Q ss_pred HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEe-CccccCCchhhH-HHHHHhhcCCCcEEEec
Q 002207 653 QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR-KEDLLKTPIVDI-WHELTSKLQCKTLCVKP 730 (953)
Q Consensus 653 q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~-~~~~~~~~~~~~-~~~~~~~lg~~PlvVKP 730 (953)
|++||.+|+||+|+++.++++|+||..|+++ |+++|||||++..++ ..+.. .+. ...+...+ +||+||||
T Consensus 82 ~~~le~~gip~~g~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~~~~----~~~~~~~~~~~~-~~P~vvKP 153 (315)
T TIGR01205 82 QGLLELMGIPYTGSGVLASALSMDKLLTKLL---WKALGLPTPDYIVLTQNRASA----DELECEQVAEPL-GFPVIVKP 153 (315)
T ss_pred HHHHHHcCCCccCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEEecccccc----hhhhHHHHHHhc-CCCEEEEe
Confidence 9999999999999999999999999999999 999999999999887 32210 111 12334567 69999999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
..+++|.||+++++.+++.. +++.++.+ ...+|||+||+|+
T Consensus 154 ~~~~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvEe~i~G~----------------- 194 (315)
T TIGR01205 154 AREGSSVGVSKVKSEEELQA---ALDEAFEY-------------------DEEVLVEQFIKGR----------------- 194 (315)
T ss_pred CCCCCccCEEEECCHHHHHH---HHHHHHhc-------------------CCcEEEEcCCCCE-----------------
Confidence 99999999999999998885 55555543 5679999999997
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecCC-ccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~-~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg 889 (953)
|++|.++++++. .+.+.+.... .+|+|..||..+.+...+|++ +++++.++|++.+.+++++||
T Consensus 195 --------e~~v~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---l~~~~~~~i~~~a~~~~~~lg 259 (315)
T TIGR01205 195 --------ELEVSILGNEEA----LPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP---LDEELEEKIKELALKAYKALG 259 (315)
T ss_pred --------EEEEEEECCCCc----cceEEecCCCCCeeCcccccCCCCeeEEeCCC---CCHHHHHHHHHHHHHHHHHhC
Confidence 999999986432 1223333222 288999999877666677875 688999999999999999999
Q ss_pred CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 890 ~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
++|++||||+++. +|++||+|||++|||++.|.++.+|.+++ ..| .+++..||+.|
T Consensus 260 ~~G~~~vD~~~~~-~g~~~viEvN~~pg~~~~s~~~~~~~~~G-~~~-~~l~~~ii~~~ 315 (315)
T TIGR01205 260 CRGLARVDFFLDE-EGEIYLNEINTIPGMTAISLFPKAAAAAG-IEF-SQLVERILELA 315 (315)
T ss_pred CCceEEEEEEEeC-CCCEEEEEeeCCCCCCCccHHHHHHHHcC-CCH-HHHHHHHHhcC
Confidence 9999999999985 67999999999999999998888888775 455 69999999864
No 24
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=2.2e-41 Score=376.72 Aligned_cols=302 Identities=30% Similarity=0.452 Sum_probs=252.8
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
+.++||+|++||.|.||++|+.|+..++.+|++ .+|++..|..+.+ .+
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~~--------------------~~----------- 49 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPGED--------------------IA----------- 49 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecCcc--------------------hH-----------
Confidence 345699999999999999999999999999975 7899887633210 00
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
. . + ....+|+||+.+||.+||
T Consensus 50 --~-------~------------------------------------------------~--~~~~~D~v~~~~~g~~~~ 70 (304)
T PRK01372 50 --A-------Q------------------------------------------------L--KELGFDRVFNALHGRGGE 70 (304)
T ss_pred --H-------H------------------------------------------------h--ccCCCCEEEEecCCCCCC
Confidence 0 0 0 012469999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
|+.+|++||.+|+||+|++..++++|+||..+|++ |+++|||+|++..+.+.+. +....+.+ +||+||
T Consensus 71 ~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gIp~p~~~~~~~~~~--------~~~~~~~~-~~P~iv 138 (304)
T PRK01372 71 DGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLV---WQAAGLPTPPWIVLTREED--------LLAAIDKL-GLPLVV 138 (304)
T ss_pred ccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHCCCCCCCEEEEeCcch--------HHHHHhhc-CCCEEE
Confidence 99999999999999999999999999999999999 9999999999999876541 33445678 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||..+++|.||.++++.+++.+ +++....+ ...+|||+||+|+
T Consensus 139 KP~~g~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvEe~i~G~--------------- 181 (304)
T PRK01372 139 KPAREGSSVGVSKVKEEDELQA---ALELAFKY-------------------DDEVLVEKYIKGR--------------- 181 (304)
T ss_pred eeCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEEcccCCE---------------
Confidence 9999999999999999998875 44444332 5679999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.++++. ..+.+++...+++++|..||..+.....+|+. ++++..+++++.+.+++++|
T Consensus 182 ----------E~~v~vi~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~---~~~~~~~~l~~~a~~~~~~l 243 (304)
T PRK01372 182 ----------ELTVAVLGGK-----ALPVIEIVPAGEFYDYEAKYLAGGTQYICPAG---LPAEIEAELQELALKAYRAL 243 (304)
T ss_pred ----------EEEEEEECCC-----ccceEEEEecCCEEeeeccccCCCeEEEeCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999864 33444555556688999999877777777765 68899999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
|++|++||||+++. +|++||+|||++|||++.|.++.++..+ |..| .+++..||+.|+.|
T Consensus 244 g~~g~~~iD~~~~~-~g~~~viEvN~~p~~~~~~~~~~~~~~~-g~~~-~~~~~~ii~~a~~~ 303 (304)
T PRK01372 244 GCRGWGRVDFMLDE-DGKPYLLEVNTQPGMTSHSLVPMAARAA-GISF-SELVDRILEDALCD 303 (304)
T ss_pred CCcceEEEEEEEcC-CCCEEEEEecCCCCCCcccHHHHHHHHc-CCCH-HHHHHHHHHHHhhc
Confidence 99999999999985 6999999999999999999888888777 5566 69999999999976
No 25
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=100.00 E-value=1.4e-38 Score=331.73 Aligned_cols=202 Identities=29% Similarity=0.427 Sum_probs=166.1
Q ss_pred HHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEE
Q 002207 212 EMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291 (953)
Q Consensus 212 ~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vl 291 (953)
+|+++|||||+|+++...+.....+.+... .++||+||||+++|||+||++|++.+|+.+++.+++ .+++++|
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~-----~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~--~~~~~vl 73 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILE-----DLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAF--KYDDDVL 73 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHH-----HHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHT--TTHSEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHh-----hcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHh--hhcceEE
Confidence 578999999999999987654333223322 367899999999999999999999999988887765 4889999
Q ss_pred EeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccC-CCceEEEcCCCCCHHHHHHH
Q 002207 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP-TQQVAYHTPPRFPIVVINSI 370 (953)
Q Consensus 292 VEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~-~~~~~~~~Pa~l~~~~~~~i 370 (953)
||+||+| +|++|+|+++ +.+.++++.|+.. ..+||||++||.. +..+.+.+|+.+++++.++|
T Consensus 74 VEefI~G-~E~tv~vl~~-----~~~~~~~~~ei~~----------~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~~~~i 137 (203)
T PF07478_consen 74 VEEFISG-REFTVGVLGN-----GEPRVLPPVEIVF----------PSEFYDYEAKYQPADSETEYIIPADLSEELQEKI 137 (203)
T ss_dssp EEE--SS-EEEEEEEEES-----SSTEEEEEEEEEE----------SSSEEEHHHHHSGCCSCEEEESS-SS-HHHHHHH
T ss_pred EEeeecc-cceEEEEEec-----CCcccCceEEEEc----------CCCceehhheeccCCCceEEEecCCCCHHHHHHH
Confidence 9999997 9999999962 2367888887764 4589999999954 34478889999999999999
Q ss_pred HHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHH
Q 002207 371 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 450 (953)
Q Consensus 371 ~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~ 450 (953)
+++|.++|++|||+|++||||++ +++|++||+||||+||||++|+||++|++.|++|.+|+++
T Consensus 138 ~~~a~~a~~~lg~~~~~RiD~rv-----------------~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~ 200 (203)
T PF07478_consen 138 KEIAKKAFKALGCRGYARIDFRV-----------------DEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIER 200 (203)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEEE-----------------ETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHHHcCCCceeEEEEe-----------------ccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999987 6789999999999999999999999999999999999999
Q ss_pred HHH
Q 002207 451 IIG 453 (953)
Q Consensus 451 li~ 453 (953)
||+
T Consensus 201 iie 203 (203)
T PF07478_consen 201 IIE 203 (203)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 26
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=100.00 E-value=8.2e-36 Score=311.05 Aligned_cols=200 Identities=27% Similarity=0.444 Sum_probs=162.4
Q ss_pred HHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCC
Q 002207 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNS 766 (953)
Q Consensus 687 l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~ 766 (953)
|+++|||||+|.++.+.++.. ...++....+ +||+||||+++|||.||++|++.+||.. ++++++++
T Consensus 2 ~~~~gI~tp~~~~~~~~~~~~----~~~~~~~~~l-~~P~~VKP~~~GsS~Gi~~v~~~~el~~---ai~~~~~~----- 68 (203)
T PF07478_consen 2 LKSAGIPTPPYVVVKKNEDDS----DSIEKILEDL-GFPLFVKPASEGSSIGISKVHNEEELEE---AIEKAFKY----- 68 (203)
T ss_dssp HHHTT-BB-SEEEEETTSHHH----HHHHHHHHHH-SSSEEEEESSTSTTTTEEEESSHHHHHH---HHHHHTTT-----
T ss_pred hhhcCCCCCCEEEEecccccc----hhHHHHHhhc-CCCEEEEECCCCccEEEEEcCCHHHHHH---HHHHHhhh-----
Confidence 789999999999999876422 2234566788 6999999999999999999999999885 78888765
Q ss_pred cccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCcc
Q 002207 767 FSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 846 (953)
Q Consensus 767 ~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~ 846 (953)
++.+|||+||+|+ |++|+|++++. .. +.|..++....+|
T Consensus 69 --------------~~~vlVEefI~G~-------------------------E~tv~vl~~~~-~~-~~~~~ei~~~~~~ 107 (203)
T PF07478_consen 69 --------------DDDVLVEEFISGR-------------------------EFTVGVLGNGE-PR-VLPPVEIVFPSEF 107 (203)
T ss_dssp --------------HSEEEEEE--SSE-------------------------EEEEEEEESSS-TE-EEEEEEEEESSSE
T ss_pred --------------cceEEEEeeeccc-------------------------ceEEEEEecCC-cc-cCceEEEEcCCCc
Confidence 6899999999997 99999999654 43 4566777778899
Q ss_pred cccccccc--CCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchH
Q 002207 847 LSLEEKFQ--GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 924 (953)
Q Consensus 847 ~d~~~Ky~--~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l 924 (953)
|||++||. ++.....+|+. +++++.++|+++|++++++|||+|++|||||++. +|++||+||||+||||+.|.+
T Consensus 108 ~d~~~Ky~~~~~~~~~~~pa~---l~~~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~-~g~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 108 YDYEAKYQPADSETEYIIPAD---LSEELQEKIKEIAKKAFKALGCRGYARIDFRVDE-DGKPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp EEHHHHHSGCCSCEEEESS-S---S-HHHHHHHHHHHHHHHHHTTTCSEEEEEEEEET-TTEEEEEEEESS-G-STTSHH
T ss_pred eehhheeccCCCceEEEecCC---CCHHHHHHHHHHHHHHHHHHcCCCceeEEEEecc-CCceEEEeccCcccccCCCHH
Confidence 99999994 46667788887 6899999999999999999999999999999985 799999999999999999988
Q ss_pred HHHHHhcCCCCCHHHHHHHHHH
Q 002207 925 IHQALSEQPPMYPHQFFRKVLD 946 (953)
Q Consensus 925 ~~~a~~~~~~~yp~~l~~~li~ 946 (953)
+++|.+++ ..| .+|+++||+
T Consensus 184 p~~~~~~G-~sy-~~li~~iie 203 (203)
T PF07478_consen 184 PRMAEAAG-ISY-EDLIERIIE 203 (203)
T ss_dssp HHHHHHTT---H-HHHHHHHHH
T ss_pred HHHHHHcC-CCH-HHHHHHHhC
Confidence 88887664 455 699998885
No 27
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=100.00 E-value=3.7e-32 Score=312.94 Aligned_cols=626 Identities=17% Similarity=0.181 Sum_probs=429.5
Q ss_pred cCeEEEEe-c----CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLIC-G----GPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~-G----G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||.||. | |+..|+|+| |.+.++||++++...+.+ +++-.....+ ...+|.-..+ +.+..+
T Consensus 377 ~~kVlvlGSGGLsIGQAGEFDYS---GsQAiKAlkEe~i~TiLi--NPNIAtvQts------~~lAD~vyfl-pvT~~~- 443 (1435)
T KOG0370|consen 377 VKKVLVLGSGGLSIGQAGEFDYS---GSQAIKALKEENIFTILI--NPNIATVQTS------KGLADKVYFL-PVTPEY- 443 (1435)
T ss_pred ccEEEEEccCCccccccceeeee---HHHHHHhhhhcccEEEEE--CCcccccccc------cccceEEEEe-ecCHHH-
Confidence 46899984 5 456899997 999999999998876654 4442222111 1122211111 111100
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.-..+ ..++||.+...+.|+.+.+-.+ +++++.+|+...|.+..+...+.|+..+.+.|++.+.+..++...+
T Consensus 444 -vt~vi--~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~ 520 (1435)
T KOG0370|consen 444 -VTKVI--KAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVS 520 (1435)
T ss_pred -HHHHH--HhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchhhHh
Confidence 00111 2458999999999999988655 5899999999999999999999999999999999999999988776
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
.-+....+. +.++||++|+.+..-++.|-..++|++|+.+.+...++ ..+++|||+-+.||+|++..|+
T Consensus 521 sie~al~aa---------e~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a--~s~QilvekSlkGwkevEyevv 589 (1435)
T KOG0370|consen 521 TIEEALEAA---------ERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALA--LSPQILVEKSLKGWKEVEYEVV 589 (1435)
T ss_pred HHHHHHHHH---------HhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhccc--cCceeeehhhhccccceEEEEE
Confidence 644322221 24789999999999999999999999999988887664 6789999999999999999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
+|..+|+ +..+ +.+.||.-.-++. .+....|++ ++++.++.+|..|.++.|.||..|-
T Consensus 590 rDa~~nc---iTvc----------------nmen~DplgihtG--dSiVvapsqtlsd~ey~mlrttaikVirhlgvvGE 648 (1435)
T KOG0370|consen 590 RDAYDNC---ITVC----------------NMENFDPLGIHTG--DSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGE 648 (1435)
T ss_pred eccccch---hhhc----------------CCcccCcceeecc--ceEEEeeccccChHHHHHHHhcchhheeccCCccc
Confidence 9876553 2211 3445665555543 356778887 9999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcch-------HHH------------------------
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF-------LFQ------------------------ 435 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~-------~p~------------------------ 435 (953)
++|++.+.|. .-+++++|||.+- .+.|- ||.
T Consensus 649 cniQyaL~p~----------------s~~y~IiEVNarL--SrssaLASkaTgypLAy~aAKlalg~~lpe~~n~Vt~~T 710 (1435)
T KOG0370|consen 649 CNIQYALNPY----------------SLEYRIIEVNARL--SRSSALASKATGYPLAYTAAKLALGIPLPELKNSVTKTT 710 (1435)
T ss_pred ccceeeeccc----------------ceeEEEEEEEeEE--eehhhhhccCccCcHHHHHHHHhcCcccccCCcccccce
Confidence 9999987542 2369999999721 11111 110
Q ss_pred --------------------------------------HHHHhCCCHHHHHHHHHHHH---hhhC----------CCCCC
Q 002207 436 --------------------------------------QASKVGFSHSNILRTIIGHA---CSRF----------PNLAS 464 (953)
Q Consensus 436 --------------------------------------~a~~~G~s~~~ll~~li~~a---~~r~----------~~~~~ 464 (953)
...+.|-+|++-+++.++.. +.-| ..|..
T Consensus 711 ~AcFEpslDY~v~KiprWDl~kf~~vs~~igssmKSvgEvm~iGR~feea~QKalr~vd~~~~Gf~~~~~~~~~~~eL~~ 790 (1435)
T KOG0370|consen 711 TACFEPSLDYCVVKIPRWDLSKFQRVSTEIGSSMKSVGEVMAIGRTFEEAFQKALRMVDPSLLGFMSTPFLDDLDEELST 790 (1435)
T ss_pred ecccCcchhheeeecccccHHHHHHHHHhhchhhhhhhhhhhhhhhHHHHHHHHHhhcChhhcCcccccchhhHHHHhcC
Confidence 01133444444444333221 1001 01111
Q ss_pred CCCc--------------------------c--------------------------------------eeccccc----
Q 002207 465 YNSV--------------------------S--------------------------------------SHLPGRS---- 476 (953)
Q Consensus 465 ~~~~--------------------------~--------------------------------------~~~~~~~---- 476 (953)
|++. | .||...+
T Consensus 791 ptd~r~faia~a~~~~~svd~~~elt~IdkWFL~k~~~i~~~~~~l~~~~~~~l~~~ll~~AK~~GFsD~QIa~~i~s~E 870 (1435)
T KOG0370|consen 791 PTDRRVFAIAAALAKGYSVDRIHELTRIDKWFLYKLMNIVNIYKLLESHSLSSLPKELLLRAKKLGFSDKQIAKFIGSTE 870 (1435)
T ss_pred CccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHcCCcHHHHHHHhCccH
Confidence 1110 0 1111111
Q ss_pred -------------------ccCCCccccccCC----------------CceEEEEec-C----CCcccceeccccHHHHH
Q 002207 477 -------------------SGSKPTEALNKRE----------------GIREVFVIF-G----GDTSERQVSLMSGTNVW 516 (953)
Q Consensus 477 -------------------~~~~~~~~~~~~~----------------~~~~v~vl~-G----G~s~E~~vS~~s~~~v~ 516 (953)
+.... .|+..+ ...-+.||. | |.|.|.|.+.+++.
T Consensus 871 l~vR~~R~~~gi~P~VKqIDTvAa--E~Pa~TNYLY~tyn~~~hDv~F~~~g~mVlGsGvYrIGSSVEFDwcaV~~~--- 945 (1435)
T KOG0370|consen 871 LAVRRLRKELGIHPFVKQIDTVAA--EFPAQTNYLYTTYNATEHDVDFNEHGVMVLGSGVYRIGSSVEFDWCAVGCA--- 945 (1435)
T ss_pred HHHHHHHHhcCCCchhhhhhhhhh--cCccccceEEEEecCcccccccCCCceEEEcccceecccceeechhhhhHH---
Confidence 11110 111100 011234433 2 56778877777664
Q ss_pred HHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCcccccccccccccee
Q 002207 517 LNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVV 596 (953)
Q Consensus 517 ~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (953)
+.|+. .++..+.|..+|+.
T Consensus 946 rtLr~-~g~kTimvNyNPET------------------------------------------------------------ 964 (1435)
T KOG0370|consen 946 RTLRK-LGKKTIMVNYNPET------------------------------------------------------------ 964 (1435)
T ss_pred HHHHH-cCCceEEEecCccc------------------------------------------------------------
Confidence 55653 56667766666641
Q ss_pred ccccccccccccccccccccCCCC-ccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHh
Q 002207 597 NDLVEGLKKHSWFTGFDIADELPM-RHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 674 (953)
Q Consensus 597 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~ 674 (953)
.++ .||..|.+++ .++++.+++. ..|...-+++.+.|+.-. .|.--|...|+...|.++....-+
T Consensus 965 ------VST-----DyDecdrLYFeeis~E~vmDiYe~E~~~G~iis~GGQ~pn--NiA~~L~r~~~kilGTsP~~ID~A 1031 (1435)
T KOG0370|consen 965 ------VST-----DYDECDRLYFEEISYERVMDIYELENSEGIIISVGGQLPN--NIALKLHRNGVKILGTSPEMIDSA 1031 (1435)
T ss_pred ------ccC-----chHHHhhHhHhhhhhhhhhhhhhhccCCceEEEecCcCcc--hhhhHhHhcCCeEecCChHhhhhh
Confidence 000 0111111111 1122222222 235566788888887766 466667889999999999999999
Q ss_pred cChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHH
Q 002207 675 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 754 (953)
Q Consensus 675 ~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~a 754 (953)
.|++.+.++ |.+.||.+|+|.-+++- +...++.+++ +|||+|.|+.--|+..+..+.+.+||+.|
T Consensus 1032 EnR~kFS~~---Ld~i~v~Qp~Wkelt~~--------~eA~~F~~~V-gYP~lvRPSYVLSGaAMnv~~~~~dl~~~--- 1096 (1435)
T KOG0370|consen 1032 ENRFKFSRM---LDSIGVDQPAWKELTSL--------EEAKKFAEKV-GYPVLVRPSYVLSGAAMNVVYSESDLKSY--- 1096 (1435)
T ss_pred hhHHHHHHH---HHHcCCCchhhhhhccH--------HHHHHHHHhc-CCceEecccceecchhhhhhhcHHHHHHH---
Confidence 999999999 99999999999877653 2346677889 69999999999999999999999999975
Q ss_pred HHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceee
Q 002207 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 834 (953)
Q Consensus 755 l~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~ 834 (953)
++.+... +++.++++-+||+|. +|+.++.+..+|...+.
T Consensus 1097 L~~A~~v-----------------s~dhPVVisKfie~A------------------------kEidvDAVa~~G~~~~h 1135 (1435)
T KOG0370|consen 1097 LEQASAV-----------------SPDHPVVISKFIEGA------------------------KEIDVDAVASDGKVLVH 1135 (1435)
T ss_pred HHHHhhc-----------------CCCCCEEhHHhhccc------------------------ceechhhhccCCeEEEE
Confidence 5555443 237889999999997 69999999988876433
Q ss_pred CceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC
Q 002207 835 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 914 (953)
Q Consensus 835 ~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt 914 (953)
.-+ +..++ +..+.|+...++|++ +++++..++|++.+.+++++|.+.|..+++|+.. ++++.|||.|-
T Consensus 1136 aiS-EHvEn-------AGVHSGDAtlv~Ppq--~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k--~n~lkVIECN~ 1203 (1435)
T KOG0370|consen 1136 AIS-EHVEN-------AGVHSGDATLVLPPQ--DLSADTLERIKDIAAKVAKALKITGPFNMQIIAK--DNELKVIECNV 1203 (1435)
T ss_pred ehh-hhhhc-------ccccCCceeEeCCch--hcCHHHHHHHHHHHHHHHHHhcccCCceEEEEec--CCeEEEEEeee
Confidence 211 22222 235667777888887 5899999999999999999999999999999886 57999999996
Q ss_pred C
Q 002207 915 V 915 (953)
Q Consensus 915 ~ 915 (953)
+
T Consensus 1204 R 1204 (1435)
T KOG0370|consen 1204 R 1204 (1435)
T ss_pred e
Confidence 3
No 28
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=100.00 E-value=1e-31 Score=298.41 Aligned_cols=284 Identities=17% Similarity=0.207 Sum_probs=206.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
|||+||. ||+|+.|++.++++|++.||+|..++++.. ++..... ...+.+ .
T Consensus 1 m~~~i~~------~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~--~~~~~~~------~~~~~~--~------------- 51 (300)
T PRK10446 1 MKIAILS------RDGTLYSCKRLREAAIQRGHLVEILDPLSC--YMNINPA------ASSIHY--K------------- 51 (300)
T ss_pred CeEEEEe------cCCcchhHHHHHHHHHHcCCeEEEEehHHc--eEecCCC------cccEEE--C-------------
Confidence 5899998 999999999999999999999998765421 1110000 000000 0
Q ss_pred HhhccCcCEEEEcCCCCC---CCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 158 EHLAANVDIVFPTIHGRF---GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~---GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
.....++|+||+.+|+.. |+++ +.+||.+| +|+++++.++++|+||..++++|+++|||+|++..+.+.+
T Consensus 52 ~~~~~~~d~v~~~~~~~~~~~~~~~--~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~---- 124 (300)
T PRK10446 52 GRKLPHFDAVIPRIGTAITFYGTAA--LRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPD---- 124 (300)
T ss_pred CcccCCCCEEEEcCCCchhhHHHHH--HHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCHH----
Confidence 000126999999999844 4454 77999999 7899999999999999999999999999999998875432
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccC---CCCeEEEEEEEEeCC
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL---EGGSEFTAIVLDVGS 311 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI---~Gg~E~tv~Vl~~~~ 311 (953)
.+.+++... .+||+||||.++++|.||+++++.+++........ .++..+|||+|| .| +|++|.|++
T Consensus 125 ~~~~~~~~~----~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~--~~~~~~lvQe~I~~~~g-~d~rv~vig--- 194 (300)
T PRK10446 125 DTSDLIDMV----GGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFR--GLNAHILVQEYIKEAQG-CDIRCLVVG--- 194 (300)
T ss_pred HHHHHHHHh----CCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHH--hcCCCEEEEeeeccCCC-ceEEEEEEC---
Confidence 222332211 26799999999999999999999887654443322 356789999999 56 999999994
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+ ++ +...++. + ... +|.++|..++ +. .|..++++ ++++|.+++++|||. ++||||
T Consensus 195 -~--~~--~~~~~r~--~--------~~~--~~~~n~~~g~-~~--~~~~l~~~----~~~~a~~a~~alg~~-~~gvD~ 249 (300)
T PRK10446 195 -D--EV--VAAIERR--A--------KEG--DFRSNLHRGG-AA--SVASITPQ----EREIAIKAARTMALD-VAGVDI 249 (300)
T ss_pred -C--EE--EEEEEEe--c--------CCC--chhheeccCC-ee--ccCCCCHH----HHHHHHHHHHHhCCC-EEEEEE
Confidence 2 22 2232222 1 111 6788887654 32 34456555 589999999999997 999998
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 456 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~ 456 (953)
++ +++| +||+|||++|||+. +++++|+++.+++...|....
T Consensus 250 ~~-----------------~~~g-~~vlEvN~~pg~~~------~~~~~g~~~~~~~~~~i~~~~ 290 (300)
T PRK10446 250 LR-----------------ANRG-PLVMEVNASPGLEG------IEKTTGIDIAGKMIRWIERHA 290 (300)
T ss_pred EE-----------------cCCC-cEEEEEECCCChhh------hHHHHCcCHHHHHHHHHHHhc
Confidence 75 5567 89999999999873 457889999888776665544
No 29
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.97 E-value=5.2e-30 Score=301.46 Aligned_cols=352 Identities=16% Similarity=0.186 Sum_probs=249.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.+|.. |..+++++++.|++++.++-+.+........ +|..+.+.+.. ........
T Consensus 3 ~kvLIan~Gei---------a~~iiraar~lGi~~V~v~s~~d~~a~~~~~--------AD~~~~i~~~~~~~syld~~~ 65 (499)
T PRK08654 3 KKILIANRGEI---------AIRVMRACRELGIKTVAVYSEADKNALFVKY--------ADEAYPIGPAPPSKSYLNIER 65 (499)
T ss_pred ceEEEECCcHH---------HHHHHHHHHHcCCeEEEEeccccccccchhh--------CCEEEEcCCCCcccCccCHHH
Confidence 48999987754 7788999999999998887655432221110 11001110000 00001111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe--cCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL--QGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~--~~~~~~ 232 (953)
+.+. ...++|.|+|. +|...|+..++..|+.+|++|+|+++.++.++.||..+|++|+++|||+||+... .+.
T Consensus 66 i~~~a~~~~~daI~pg-~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~--- 141 (499)
T PRK08654 66 IIDVAKKAGADAIHPG-YGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDI--- 141 (499)
T ss_pred HHHHHHHhCCCEEEEC-CCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCH---
Confidence 1111 13479999997 5788899999999999999999999999999999999999999999999998753 322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
+++.++.+ +++||+||||+.+|+|+||.+|++.+|+.+....... .-.++.++||+||+|++|+++.+++
T Consensus 142 -~e~~~~a~-----~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~ 215 (499)
T PRK08654 142 -EEAKEIAE-----EIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILA 215 (499)
T ss_pred -HHHHHHHH-----HhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEE
Confidence 22333332 3789999999999999999999999987665544321 1125689999999988999999998
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
++.|+ .+.+...+. ....++. ......|+. +++++.++|++.|.+++++||+.|.+
T Consensus 216 d~~G~---vv~l~~rec-----------------siqrr~q---k~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~g 272 (499)
T PRK08654 216 DKHGN---VIHLGDREC-----------------SIQRRHQ---KLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAG 272 (499)
T ss_pred cCCCC---EEEEeeecc-----------------ccccCcc---ceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCce
Confidence 65443 332221110 1111111 133446764 89999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
+|||++ .+|++||+||||+++.+. |.....+|++ |+..+|+.|+.....+.. .
T Consensus 273 tVEfl~------------------~~g~~yflEiNpRlqveh----~vte~~tGvD---lv~~~i~~A~G~~l~~~~~~~ 327 (499)
T PRK08654 273 TVEFLY------------------SNGNFYFLEMNTRLQVEH----PITEMVTGID---IVKEQIKIAAGEELSFKQEDI 327 (499)
T ss_pred EEEEEE------------------ECCcEEEEEEECCCCCCC----ceeehhhCCC---HHHHHHHHhcCCCCCCccccc
Confidence 999876 357899999999998653 2222457995 677778888775322221 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
...+++|++|+++++|...|.|++|+++-....||....
T Consensus 328 ~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr 366 (499)
T PRK08654 328 TIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVR 366 (499)
T ss_pred ccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCCEE
Confidence 224799999999999998999999998877777877654
No 30
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.97 E-value=1e-29 Score=298.73 Aligned_cols=352 Identities=16% Similarity=0.157 Sum_probs=247.5
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc-ccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL-AQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (953)
+||+|+.+|.. |..+++++++.|++++.++.+.+........+ |..+.+.+. ...+.....+
T Consensus 3 ~kvLi~~~gei---------a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~a--------D~~~~i~~~~~~~y~d~~~i 65 (472)
T PRK07178 3 KKILIANRGEI---------AVRIVRACAEMGIRSVAIYSEADRHALHVKRA--------DEAYSIGADPLAGYLNPRRL 65 (472)
T ss_pred cEEEEECCcHH---------HHHHHHHHHHcCCeEEEEeCCCccCCccHhhC--------CEEEEcCCCchhhhcCHHHH
Confidence 48999987754 88999999999999999887766432211111 100000000 0001011111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--ecCCccch
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSEVNE 233 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~~~~~~~~ 233 (953)
.+. ...++|+|+|.. |...|+..++.+++.+|+||+|+++.++.++.||..+|++|+++|||+||+.. +.+.+
T Consensus 66 ~~~a~~~~~D~I~pg~-g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~--- 141 (472)
T PRK07178 66 VNLAVETGCDALHPGY-GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLD--- 141 (472)
T ss_pred HHHHHHHCCCEEEeCC-CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHH---
Confidence 111 134799999974 78889999999999999999999999999999999999999999999999864 22221
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++.++.+ .++||+||||+.+|+|+||.+|++.+|+.+....... ...+..++||+||.|++|+++.++++
T Consensus 142 -e~~~~~~-----~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d 215 (472)
T PRK07178 142 -EALAEAE-----RIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILAD 215 (472)
T ss_pred -HHHHHHH-----HcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEE
Confidence 2222222 3789999999999999999999999997765443221 11356799999998789999999986
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
++|+ .+.+...+ ..+..++. ......|+ .+++++.++|++.|.+++++||+.|.++
T Consensus 216 ~~G~---~v~~~er~-----------------~s~~~~~~---~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~ 272 (472)
T PRK07178 216 SHGN---VVHLFERD-----------------CSIQRRNQ---KLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGT 272 (472)
T ss_pred CCCC---EEEEEccc-----------------cceEecCc---ceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeE
Confidence 5442 22221110 11111111 12334566 6999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCC--CCC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA--SYN 466 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~--~~~ 466 (953)
|||++ +++|++||+||||+++.+. +.....+|+++ ++.+++.|+....... ...
T Consensus 273 vEf~~-----------------d~~g~~y~iEiNpRl~~~~----~~te~~tGvdl---~~~~ir~a~G~~l~~~~~~~~ 328 (472)
T PRK07178 273 VEFLL-----------------DADGEVYFMEMNTRVQVEH----TITEEITGIDI---VREQIRIASGLPLSYKQEDIQ 328 (472)
T ss_pred EEEEE-----------------eCCCCEEEEEEeCCcCCCc----cceeeeeCcCH---HHHHHHHHCCCCCCCccccCC
Confidence 99987 5678899999999997653 22234679975 4566777777532221 112
Q ss_pred CcceecccccccCCCccccccCCCceEEEEecCCCcc
Q 002207 467 SVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTS 503 (953)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~ 503 (953)
..+++|+.|+.++++...|.++.++++-+...+|...
T Consensus 329 ~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~v 365 (472)
T PRK07178 329 HRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGPGV 365 (472)
T ss_pred cceEEEEEEEeeecCCcCEecCceEEEEEEcCCCCCe
Confidence 2479999999999998889999998876666676654
No 31
>PRK05586 biotin carboxylase; Validated
Probab=99.97 E-value=2.5e-29 Score=294.21 Aligned_cols=351 Identities=17% Similarity=0.204 Sum_probs=243.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.||.. |..+++++++.||+++.++.+.+..+..... +|..+.+.+.. ..+.....
T Consensus 3 kkvli~g~G~~---------~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~--------aD~~~~~~~~~~~~~y~~~~~ 65 (447)
T PRK05586 3 KKILIANRGEI---------AVRIIRACREMGIETVAVYSEADKDALHVQL--------ADEAVCIGPASSKDSYLNIQN 65 (447)
T ss_pred ceEEEECCcHH---------HHHHHHHHHHcCCcEEEEcChHhccCcchhh--------CCEEEEeCCCChhhcccCHHH
Confidence 58999999976 8899999999999988776543332211100 11101100000 00000011
Q ss_pred HHH-hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~-~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+ ....++|+|+|.. |..+|++.++.+++.+|+||+|+++.++.+++||..+|++|+++|||+|+++ .+.+.+
T Consensus 66 i~~~~~~~~~d~i~p~~-~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~-- 142 (447)
T PRK05586 66 IISATVLTGAQAIHPGF-GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEE-- 142 (447)
T ss_pred HHHHHHHcCCCEEEcCc-cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHH--
Confidence 111 1245899999996 7889999999999999999999999999999999999999999999999984 333322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---CC-CCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GI-DDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~~-~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++.++. +.++||+||||..+|+|+|+.+|++.+|+.+...+.... .+ ++.++||+||+|++|+++.+++
T Consensus 143 --e~~~~~-----~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~ 215 (447)
T PRK05586 143 --EALEIA-----KEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILG 215 (447)
T ss_pred --HHHHHH-----HHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEE
Confidence 222222 237899999999999999999999999976555432211 12 4689999999987999999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+..| ..+.+ ++.. +.+...+ .......|+ .+++++.+++++.|.+++++||+.|.+
T Consensus 216 d~~G---~~~~~--~~~~---------------~~~~~~~---~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~ 272 (447)
T PRK05586 216 DNYG---NVVHL--GERD---------------CSLQRRN---QKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAG 272 (447)
T ss_pred CCCC---CEEEE--ecee---------------cceEecc---cceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCccee
Confidence 5433 22221 1111 0011111 112233565 489999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCC--
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY-- 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~-- 465 (953)
+|||++ +++|++||+||||++|.+. +....++|+| +.+.+++.++.....+...
T Consensus 273 ~vEf~~-----------------~~~g~~~~iEvNpR~~~~~----~~t~~~tGid---~~~~~i~~a~G~~l~~~~~~~ 328 (447)
T PRK05586 273 TIEFLL-----------------DKDGNFYFMEMNTRIQVEH----PITEMITGVD---LVKEQIKIAYGEKLSIKQEDI 328 (447)
T ss_pred EEEEEE-----------------cCCCCEEEEEEECCCCCCc----cceehhhCCC---HHHHHHHHHcCCCCCCccccc
Confidence 999987 6788999999999998653 2233568996 4556677777653222111
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 502 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s 502 (953)
...+++++.|+.++++...|++..+..+-.-+.++..
T Consensus 329 ~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~ 365 (447)
T PRK05586 329 KINGHSIECRINAEDPKNGFMPCPGKIEELYIPGGLG 365 (447)
T ss_pred CcCceEEEEEeeccCcccCccCCCCEEEEEEcCCCCC
Confidence 1236899999999998888888888876555455433
No 32
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.97 E-value=4.6e-29 Score=292.22 Aligned_cols=353 Identities=17% Similarity=0.168 Sum_probs=242.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.+|.. |..+++++++.||+|+.++.+.+..+..... +|..+.+.+.. ........
T Consensus 3 kkili~g~g~~---------~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~--------aD~~~~~~~~~~~~~y~d~~~ 65 (449)
T TIGR00514 3 DKILIANRGEI---------ALRILRACKELGIKTVAVHSTADRDALHVLL--------ADEAVCIGPAPSAKSYLNIPN 65 (449)
T ss_pred ceEEEeCCCHH---------HHHHHHHHHHcCCeEEEEEChhhhccccccc--------CCEEEEcCCCCchhchhCHHH
Confidence 48999987765 8889999999999999887654422211110 11000010000 00000011
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|+|.. |...|++.++..++.+|+||+|+++.++.+|+||..+|++|+++|||+|+++ .+.+.+
T Consensus 66 l~~~a~~~~id~I~pg~-g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~-- 142 (449)
T TIGR00514 66 IISAAEITGADAIHPGY-GFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEE-- 142 (449)
T ss_pred HHHHHHHhCCCEEEeCC-CccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHH--
Confidence 1111 245899999985 6778999999999999999999999999999999999999999999999875 333322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++..+.+ .++||+||||..+++|.||.++++.+|+.+....... ....+.+|||+||+|++|+++.++.
T Consensus 143 --e~~~~~~-----~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~ 215 (449)
T TIGR00514 143 --ENVRIAK-----RIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLA 215 (449)
T ss_pred --HHHHHHH-----HhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEE
Confidence 2222222 3688999999999999999999999998766554321 1134679999999987999999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+++|+ .+.+ ++.. ..+..++. ......|+ .+++++.++|++.|.+++++||++|++
T Consensus 216 d~~g~---~~~~--~~~~---------------~~~~~~~~---~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~ 272 (449)
T TIGR00514 216 DKYGN---AIYL--GERD---------------CSIQRRHQ---KLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAG 272 (449)
T ss_pred cCCCC---EEEE--eccc---------------cCceeccc---ceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceE
Confidence 54332 2221 1110 01111111 12223454 599999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
+|||++ +++|.+||+||||+++.+. +....++|+++ ++.+++.++..-..+.. .
T Consensus 273 ~vef~~-----------------~~~g~~~viEiNpR~~~~~----~~~~~~tGvdl---~~~~i~~a~G~~l~~~~~~~ 328 (449)
T TIGR00514 273 TVEFLL-----------------DKNGEFYFMEMNTRIQVEH----PVTEMITGVDL---IKEQIRIAAGEPLSLKQEDV 328 (449)
T ss_pred EEEEEE-----------------eCCCCEEEEEEECCCCCCc----ceeehhcCCcH---HHHHHHHHCCCCCCCccccC
Confidence 999987 5678899999999998652 22334679975 66667777765322211 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
...++++..|+.++++...|.+..++..-....++...+
T Consensus 329 ~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~ 367 (449)
T TIGR00514 329 VVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVR 367 (449)
T ss_pred CCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEe
Confidence 123689999999988877777777776554555555543
No 33
>PLN02735 carbamoyl-phosphate synthase
Probab=99.97 E-value=5.7e-29 Score=314.90 Aligned_cols=309 Identities=15% Similarity=0.106 Sum_probs=227.0
Q ss_pred CCcCeEEEEecC-----CCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccc
Q 002207 75 GRVLRVGLICGG-----PSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQG 149 (953)
Q Consensus 75 ~~~~kV~vl~GG-----~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (953)
..++||+||.+| ++.|+|++ +-+++++|++.||+++.++.+++-.....+ .+| ..+.+++.
T Consensus 572 ~~~kkvlilG~G~~~igq~iefd~~---~v~~~~alr~~G~~tI~v~~npetvstd~~--------~aD-~~y~~pl~-- 637 (1102)
T PLN02735 572 TNKKKVLILGGGPNRIGQGIEFDYC---CCHASFALQDAGYETIMMNSNPETVSTDYD--------TSD-RLYFEPLT-- 637 (1102)
T ss_pred CCCceEEEeCccccccCccccccee---HHHHHHHHHHcCCeEEEEeCCCccccCCcc--------cCC-eEEEEeCC--
Confidence 345799999875 47899996 888999999999999988876653211000 011 01111111
Q ss_pred cCcchhHHHh-hccCcCEEEEcCCCCCCCc--hHHHHHHHc---------CCccEECCCHHHHHHhccHHHHHHHHHHCC
Q 002207 150 FGSLSEFAEH-LAANVDIVFPTIHGRFGED--GGIQEVLEK---------YNVPFVGTGSRACRQAFDKYDASLEMSKQG 217 (953)
Q Consensus 150 ~~~~~~~~~~-~~~~~D~vf~~lhG~~GEd--g~iq~lle~---------~gIpyvGs~~~a~~i~~DK~~~k~~l~~~G 217 (953)
...+.+. ..+++|.|+|.+.|+.+-+ ..+.+.|+. .|++++|+++.++.+|+||..+|++|+++|
T Consensus 638 ---~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~G 714 (1102)
T PLN02735 638 ---VEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELK 714 (1102)
T ss_pred ---HHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcC
Confidence 1111111 2458999999998866533 123333332 389999999999999999999999999999
Q ss_pred CCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC
Q 002207 218 FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297 (953)
Q Consensus 218 iptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~ 297 (953)
||+|++..+.+.+. +.++. +.++||+||||..+++|.|+.+|++.+|+.+....++....+..+|||+||+
T Consensus 715 Ip~p~~~~v~s~ee----a~~~a-----~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~ 785 (1102)
T PLN02735 715 IEQPKGGIARSEAD----ALAIA-----KRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS 785 (1102)
T ss_pred CCCCCeeEeCCHHH----HHHHH-----HhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 99999988765332 22222 2378999999999999999999999999887776655433456799999998
Q ss_pred CCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHH
Q 002207 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASL 376 (953)
Q Consensus 298 Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~ 376 (953)
|++|++|.++.+++| ..++..+.|.. ...+++.+. +...+|+ .+++++.++|++.+.+
T Consensus 786 ~g~Ei~V~vl~D~~G---~vv~~~i~e~~-----------------~~~gvhsGd-s~~~~P~~~L~~e~~~~i~~~a~k 844 (1102)
T PLN02735 786 DATEIDVDALADSEG---NVVIGGIMEHI-----------------EQAGVHSGD-SACSLPTQTIPSSCLATIRDWTTK 844 (1102)
T ss_pred CcEEEEEEEEECCCC---CEEEecceEee-----------------eccCccCCC-ccEEecCCCCCHHHHHHHHHHHHH
Confidence 669999999975433 33333333321 123444443 4455776 6999999999999999
Q ss_pred HHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 377 ~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
++++||++|+++|||++ +++|++||+||||+|+ +.+|.+++++|+++.++..++
T Consensus 845 i~~~L~~~G~~~vqf~v-----------------~~dg~~yviEiNpR~s----~t~p~~~katGidl~~~~~~~ 898 (1102)
T PLN02735 845 LAKRLNVCGLMNCQYAI-----------------TPSGEVYIIEANPRAS----RTVPFVSKAIGHPLAKYASLV 898 (1102)
T ss_pred HHHHcCCcceeeEEEEE-----------------cCCCcEEEEEEeCCCC----ccHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999986 5678999999999998 568999999999876655443
No 34
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.97 E-value=2.2e-28 Score=287.67 Aligned_cols=356 Identities=16% Similarity=0.170 Sum_probs=246.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc-ccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL-AQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (953)
+||+|+.+|.. |..+++++++.|++++.++.+.+........+ |..+.+... ...+.....+
T Consensus 3 kkiLi~~~ge~---------a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~A--------D~~~~i~~~~~~~y~d~~~i 65 (478)
T PRK08463 3 HKILIANRGEI---------AVRVIRACRDLHIKSVAIYTEPDRECLHVKIA--------DEAYRIGTDPIKGYLDVKRI 65 (478)
T ss_pred cEEEEECCCHH---------HHHHHHHHHHcCCeEEEEECCCccCCcchhhc--------CEEEEcCCCchhcccCHHHH
Confidence 58999987765 78899999999999998886554321111101 100000000 0001111111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
.+. ...++|.|+|. .|...|+..++..|+.+|++|+|+++.++.+++||..+|++|+++|||+||+....... ..++
T Consensus 66 ~~~a~~~~iDaI~pg-~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~-~~~~ 143 (478)
T PRK08463 66 VEIAKACGADAIHPG-YGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSE-SMEE 143 (478)
T ss_pred HHHHHHhCCCEEEEC-CCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCC-CHHH
Confidence 111 23479999996 47778999999999999999999999999999999999999999999998865432111 1122
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh----HhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI----ILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~----~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.++.+ .++||+||||..+|+|+||.+|++.+|+....... .....++.++||+||+|++|+++.+++++.
T Consensus 144 ~~~~~~-----~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~ 218 (478)
T PRK08463 144 IKIFAR-----KIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNY 218 (478)
T ss_pred HHHHHH-----HhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCC
Confidence 333332 36899999999999999999999999876554422 111245789999999977999999997543
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
|+ .+.+... + .....++. ......|+. +++++.++|++.|.+++++||+.|++++|
T Consensus 219 g~---v~~~~er---------------~--~s~~~~~~---~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vE 275 (478)
T PRK08463 219 GN---IIHLCER---------------D--CSIQRRHQ---KVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIE 275 (478)
T ss_pred CC---EEEEecc---------------C--CccccccC---ceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEE
Confidence 32 2221110 0 01111111 133456774 99999999999999999999999999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--CCCc
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--YNSV 468 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~~~~ 468 (953)
|++ +++|++||+||||+++.+. +.....+|+| +++..|+.|+..-..+.. ....
T Consensus 276 f~~-----------------~~~~~~y~iEiN~R~~~~~----~~te~~tGid---lv~~~ir~a~G~~l~~~~~~~~~~ 331 (478)
T PRK08463 276 FLL-----------------DDYNRFYFMEMNTRIQVEH----GVTEEITGID---LIVRQIRIAAGEILDLEQSDIKPR 331 (478)
T ss_pred EEE-----------------cCCCCEEEEEEECCcCCCc----ceeeHhhCCC---HHHHHHHHHcCCCCCCccccCCCc
Confidence 987 5678899999999998763 2233468996 566677777775322211 1224
Q ss_pred ceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 469 SSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
++++++|+.++++...|.++.++++-....+|...+
T Consensus 332 g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr 367 (478)
T PRK08463 332 GFAIEARITAENVWKNFIPSPGKITEYYPALGPSVR 367 (478)
T ss_pred eEEEEEEEeccCcccCeecCCcEEEEEEcCCCCCee
Confidence 799999999999988899999987766555554443
No 35
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.97 E-value=2.9e-28 Score=286.15 Aligned_cols=353 Identities=16% Similarity=0.173 Sum_probs=240.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc--ccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL--AQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (953)
+||+|+.+|.. |..+++++++.||+++.++-+.+........+ |..+.+.+. ...+.....
T Consensus 6 ~~vLi~~~gei---------a~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~a--------D~~~~i~p~~~~~~y~d~~~ 68 (467)
T PRK12833 6 RKVLVANRGEI---------AVRIIRAARELGMRTVAACSDADRDSLAARMA--------DEAVHIGPSHAAKSYLNPAA 68 (467)
T ss_pred cEEEEECCcHH---------HHHHHHHHHHcCCeEEEEECCCCCCChhHHhC--------CEEEecCCCCccccccCHHH
Confidence 37778877654 78899999999999987764433221110000 000000000 000001111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|+|. .|...|+..++..|+..|++|+|+++.++.++.||..+|++|+++|||+||+. .+.+.+
T Consensus 69 i~~~a~~~~~daI~pg-~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~-- 145 (467)
T PRK12833 69 ILAAARQCGADAIHPG-YGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLD-- 145 (467)
T ss_pred HHHHHHHhCCCEEEEC-CCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHH--
Confidence 1111 13479999996 46778999889999999999999999999999999999999999999999986 444322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++.++.+ .++||+||||..+|+|.||.+|++.+|+.+....... ...++.++||+||+|++|+++.+++
T Consensus 146 --e~~~~~~-----~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~ 218 (467)
T PRK12833 146 --AALEVAA-----RIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILG 218 (467)
T ss_pred --HHHHHHH-----HhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEe
Confidence 2333332 3689999999999999999999999997765433211 1125679999999866999999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
++. ..+.+...+ ..+..++. ......|+ .+++++.++|++.|.+++++||++|.+
T Consensus 219 dg~----~~~~~~~~~-----------------~~~~r~~~---ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~ 274 (467)
T PRK12833 219 DGE----RVVHLFERE-----------------CSLQRRRQ---KILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAG 274 (467)
T ss_pred CCC----cEEEEEEee-----------------cccccCCc---cEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcc
Confidence 432 122222111 01111111 12333554 589999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
+|||+++ +++|++||+||||+++.+. +.....+|+|+ +..+++.|+.....+.. .
T Consensus 275 ~vEf~~~----------------~~~g~~~~iEvNpR~~~~~----~~te~~tGvdl---~~~~i~~a~G~~l~~~~~~~ 331 (467)
T PRK12833 275 TLEYLFD----------------DARGEFYFIEMNTRIQVEH----PVTEAITGIDL---VQEMLRIADGEPLRFAQGDI 331 (467)
T ss_pred eEEEEEe----------------cCCCCEEEEEEECCCCcch----hhhHHHhCCCH---HHHHHHHHCCCCCCCCcccc
Confidence 9999872 2468899999999998552 33344689975 44567777765332221 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
...++++++|+.++++...|.++.++++-....+|...+
T Consensus 332 ~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr 370 (467)
T PRK12833 332 ALRGAALECRINAEDPLRDFFPNPGRIDALVWPQGPGVR 370 (467)
T ss_pred CcceEEEEEEEecccCCCCcccCCCEEEEEEcCCCCCeE
Confidence 234699999999999888888888887665555655443
No 36
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=274.15 Aligned_cols=232 Identities=14% Similarity=0.171 Sum_probs=174.7
Q ss_pred CCcEEEEecCC---CCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 634 NQATVFIAVHG---GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 634 ~~dvvf~~~hG---~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
.+|+||+.+|+ .+|+++ +.+||.+| +|+++++.++++|+||..++++ |+++|||||++..+.+.+
T Consensus 57 ~~d~v~~~~~~~~~~~~~~~--~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~---l~~~gip~P~t~~~~~~~------ 124 (300)
T PRK10446 57 HFDAVIPRIGTAITFYGTAA--LRQFEMLG-SYPLNESVAIARARDKLRSMQL---LARQGIDLPVTGIAHSPD------ 124 (300)
T ss_pred CCCEEEEcCCCchhhHHHHH--HHHHHHCC-CceecCHHHHHhhhcHHHHHHH---HHHcCCCCCCEEEeCCHH------
Confidence 47999999998 455654 77999999 7899999999999999999999 999999999998775322
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.++.+.+++||+||||.++++|.||+++++.+++..+ ++....+ +..+|||+||
T Consensus 125 --~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~---~~~~~~~-------------------~~~~lvQe~I 180 (300)
T PRK10446 125 --DTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESV---IDAFRGL-------------------NAHILVQEYI 180 (300)
T ss_pred --HHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHH---HHHHHhc-------------------CCCEEEEeee
Confidence 123334445359999999999999999999998887753 3332222 4679999999
Q ss_pred c---CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCC
Q 002207 791 E---TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 791 ~---G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
+ |. |++|.++++. ..+.++.....+ +|.++|..|.... |.+
T Consensus 181 ~~~~g~-------------------------d~rv~vig~~-----~~~~~~r~~~~~--~~~~n~~~g~~~~--~~~-- 224 (300)
T PRK10446 181 KEAQGC-------------------------DIRCLVVGDE-----VVAAIERRAKEG--DFRSNLHRGGAAS--VAS-- 224 (300)
T ss_pred ccCCCc-------------------------eEEEEEECCE-----EEEEEEEecCCC--chhheeccCCeec--cCC--
Confidence 5 44 9999999753 233444433332 6778887665432 333
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHH
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 947 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~ 947 (953)
++ ++++++|.+++++|||. ++||||+++. +| +||+|||++|||+.. ..+.|..++..+++.+.+.
T Consensus 225 -l~----~~~~~~a~~a~~alg~~-~~gvD~~~~~-~g-~~vlEvN~~pg~~~~-------~~~~g~~~~~~~~~~i~~~ 289 (300)
T PRK10446 225 -IT----PQEREIAIKAARTMALD-VAGVDILRAN-RG-PLVMEVNASPGLEGI-------EKTTGIDIAGKMIRWIERH 289 (300)
T ss_pred -CC----HHHHHHHHHHHHHhCCC-EEEEEEEEcC-CC-cEEEEEECCCChhhh-------HHHHCcCHHHHHHHHHHHh
Confidence 33 45789999999999997 9999999984 56 899999999999853 2233456666677777777
Q ss_pred Hhhcc
Q 002207 948 GSERF 952 (953)
Q Consensus 948 a~~r~ 952 (953)
+..||
T Consensus 290 ~~~~~ 294 (300)
T PRK10446 290 ATTEY 294 (300)
T ss_pred ccccc
Confidence 77775
No 37
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.97 E-value=5e-28 Score=284.04 Aligned_cols=345 Identities=17% Similarity=0.174 Sum_probs=236.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.||.. |..+++++++.||+|+.++.+.+........ +|..+.+.+.. ........
T Consensus 3 k~iLi~g~g~~---------a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~--------ad~~~~~~~~~~~~~y~d~~~ 65 (451)
T PRK08591 3 DKILIANRGEI---------ALRIIRACKELGIKTVAVHSTADRDALHVQL--------ADEAVCIGPAPSKKSYLNIPA 65 (451)
T ss_pred ceEEEECCCHH---------HHHHHHHHHHcCCeEEEEcChhhccCCCHhH--------CCEEEEeCCCCcccccCCHHH
Confidence 58999987765 7889999999999999887665432111000 01000000000 00000011
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|+|.. |...|++.++..|+.+|+||+|+++.++.+++||..+|++|+++|||+|++. .+.+.+
T Consensus 66 l~~~a~~~~id~I~p~~-~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~-- 142 (451)
T PRK08591 66 IISAAEITGADAIHPGY-GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEE-- 142 (451)
T ss_pred HHHHHHHhCCCEEEECC-CccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHH--
Confidence 1111 234799999976 5677888899999999999999999999999999999999999999999874 343322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++.++.+ .++||+||||..+++|.||.+|++.+|+.+........ ..++.++||+||+|++|+++.+++
T Consensus 143 --~~~~~~~-----~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~ 215 (451)
T PRK08591 143 --EALAIAK-----EIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLA 215 (451)
T ss_pred --HHHHHHH-----HcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEE
Confidence 2333332 36889999999999999999999999987666543221 124679999999987899999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
++.|+ .+.+ ++.. ..+...+. ......|+ .+++++.++|++.|.+++++||+.|.+
T Consensus 216 d~~g~---~~~~--~~~~---------------~~~~~~~~---~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~ 272 (451)
T PRK08591 216 DGHGN---AIHL--GERD---------------CSLQRRHQ---KVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAG 272 (451)
T ss_pred cCCCC---EEEE--eccc---------------ccceecce---eEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceE
Confidence 54332 2221 1100 01111111 11223455 589999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
++||++ +++|++||+|||++++.+. +.....+|+++ +..+++.|+........ .
T Consensus 273 ~vEf~~-----------------~~~g~~~viEINpR~~~~~----~~~~~~~Gvdl---~~~~i~~a~G~~l~~~~~~~ 328 (451)
T PRK08591 273 TIEFLY-----------------EKNGEFYFIEMNTRIQVEH----PVTEMITGVDL---VKEQIRIAAGEPLSIKQEDI 328 (451)
T ss_pred EEEEEE-----------------cCCCCEEEEEEECCCCccc----hhhhhhhCCCH---HHHHHHHHCCCCCCCccccc
Confidence 999986 5678899999999997542 33345689975 55667777765322211 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEE
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFV 496 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 496 (953)
...++++..|+.++++...|.+..+..+-.-
T Consensus 329 ~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~ 359 (451)
T PRK08591 329 VFRGHAIECRINAEDPAKNFMPSPGKITRYH 359 (451)
T ss_pred CcCceEEEEEEeeecCccCcccCCCEeeEEE
Confidence 1236889999998888777777777655443
No 38
>PRK08462 biotin carboxylase; Validated
Probab=99.96 E-value=1.2e-27 Score=280.17 Aligned_cols=342 Identities=16% Similarity=0.155 Sum_probs=231.3
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 155 (953)
+||+|+.+|.. +..+++++++.||+|+.++-+.|........+ |..+.+.+.. ..+.....
T Consensus 5 k~ili~~~g~~---------~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~a--------d~~~~~~~~~~~~~y~~~~~ 67 (445)
T PRK08462 5 KRILIANRGEI---------ALRAIRTIQEMGKEAIAIYSTADKDALYLKYA--------DAKICIGGAKSSESYLNIPA 67 (445)
T ss_pred CEEEEECCcHH---------HHHHHHHHHHcCCCEEEEechhhcCCchhhhC--------CEEEEeCCCchhcccCCHHH
Confidence 58999997755 77899999999999998876655432211111 1111110000 00100111
Q ss_pred HHH-hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~-~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+ ....++|+|+|.. |..+|+..++++++.+|+||+|+++.++.+|+||..+|++|+++|||+|++. .+.+.+
T Consensus 68 l~~~~~~~~~D~i~pg~-g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~-- 144 (445)
T PRK08462 68 IISAAEIFEADAIFPGY-GFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYE-- 144 (445)
T ss_pred HHHHHHHcCCCEEEECC-CccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHH--
Confidence 111 1245899999997 6779999999999999999999999999999999999999999999999975 233222
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh----HhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI----ILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~----~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++..+.+ .++||+||||..+++|.||.+|++.+|+.+..... .....++.++||+||+|++|+++.+++
T Consensus 145 --~~~~~~~-----~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~ 217 (445)
T PRK08462 145 --EAKKIAK-----EIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILG 217 (445)
T ss_pred --HHHHHHH-----HcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEE
Confidence 2222222 36899999999999999999999999977554322 111134579999999977999999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+.+| ..+.+ ++.. ..+.....++ ....|+ .++++..++|++.|.+++++||+.|.+
T Consensus 218 ~~~g---~~~~~--g~~~------------~~~~~~~~~~------~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~ 274 (445)
T PRK08462 218 DKHG---NVIHV--GERD------------CSLQRRHQKL------IEESPAVVLDEKTRERLHETAIKAAKAIGYEGAG 274 (445)
T ss_pred CCCC---CEEEE--Eecc------------ccceecccce------EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 5433 22221 1111 0011111122 223566 489999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC-CCCCCCC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF-PNLASYN 466 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~-~~~~~~~ 466 (953)
++||++ +++|++||+||||+++.+. +....++|+++.++ +++.++... +......
T Consensus 275 ~ve~~~-----------------~~~g~~~viEiNpR~~~~~----~~~~~~~Gidl~~~---~i~~a~G~~l~~~~~~~ 330 (445)
T PRK08462 275 TFEFLL-----------------DSNLDFYFMEMNTRLQVEH----TVSEMVSGLDLIEW---MIKIAEGEELPSQESIK 330 (445)
T ss_pred eEEEEE-----------------eCCCCEEEEEEECCcCcCc----ceehhhhCCCHHHH---HHHHHCCCCcccccccC
Confidence 999986 5667899999999997542 12234579976544 555666542 1111112
Q ss_pred CcceecccccccCCCccccccCCCceEE
Q 002207 467 SVSSHLPGRSSGSKPTEALNKREGIREV 494 (953)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v 494 (953)
..++++.+|+...++. .|.+..+++.-
T Consensus 331 ~~~~a~~~~~~~~~~~-~~~p~~G~l~~ 357 (445)
T PRK08462 331 LKGHAIECRITAEDPK-KFYPSPGKITK 357 (445)
T ss_pred CceeEEEEEeccCCCC-ceecccCEEeE
Confidence 2357888899887764 35566666543
No 39
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.96 E-value=4.7e-28 Score=276.91 Aligned_cols=226 Identities=15% Similarity=0.168 Sum_probs=166.8
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccc
Q 002207 626 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDL 705 (953)
Q Consensus 626 ~~~~~~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~ 705 (953)
++++.....+-++|+. |||++|++||.+||||+||++.++++||||..+|++ ++++|||||++..+...+.
T Consensus 98 ~~~~~~~~~~~~~fl~------~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l---~~~aGIPtpp~~~~~~~~~ 168 (493)
T PRK06524 98 EFIKRRGPGGKACFVM------FDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRL---ANEAGVPSVPHVLGRVDSY 168 (493)
T ss_pred HHHHhhCCCCceEEec------CCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHH---HHHcCCCCCCcccccCCCH
Confidence 3443333345577776 499999999999999999999999999999999999 8999999999987643221
Q ss_pred cCCchhhHHHHHHhh--cCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCe
Q 002207 706 LKTPIVDIWHELTSK--LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 783 (953)
Q Consensus 706 ~~~~~~~~~~~~~~~--lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 783 (953)
.+ +.+..+. + +||+||||+.+|||+|+++|++.+||+. +++.++. .+.
T Consensus 169 -----ee-l~~~~~~~~I-GyPvVVKP~~GGSS~GV~~Vkn~eELe~---a~~~~~~--------------------~~~ 218 (493)
T PRK06524 169 -----DE-LSALAHGAGL-GDDLVVQTPYGDSGSTTFFVRGQRDWDK---YAGGIVG--------------------QPE 218 (493)
T ss_pred -----HH-HHHHHHhccC-CCcEEEEECCCCCCcCEEEeCCHHHHHH---HHHHhcC--------------------CCC
Confidence 12 2223333 8 6999999999999999999999999886 4554432 256
Q ss_pred EEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCc-eeEc
Q 002207 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG-INLT 862 (953)
Q Consensus 784 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~-~~~~ 862 (953)
++||+||.|+ |++|.++.+....+..++..++.....+.. |.++.. ..++
T Consensus 219 viVEe~I~Gr-------------------------EitVev~vd~dG~Vv~~~~~e~vg~~Ei~~----yr~G~~~~~i~ 269 (493)
T PRK06524 219 IKVMKRIRNV-------------------------EVCIEACVTRHGTVIGPAMTSLVGYPELTP----YRGGWCGNDIW 269 (493)
T ss_pred EEEEeccCcE-------------------------EEEEEEEEeCCCCEEeccccccccceEEEE----ccCCeEEEEEc
Confidence 9999999997 888877754332221111111111112222 333322 3467
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHc---CCcceEEEEEEEEcCCCcEEEEeeCCCCCC-CCCc
Q 002207 863 PPPASIMSTEALDKCKQRIELIANAL---QLEGFSRIDAFVNVDNGEVLIIEVNTVPGM-TPST 922 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aL---g~~G~ariDf~v~~~~g~~~viEINt~PGl-t~~S 922 (953)
|+. +++++.++++++|++++++| ||.|++|||||++.++|++||+||||+|+- ++.+
T Consensus 270 PA~---L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~tpmt 330 (493)
T PRK06524 270 PGA---LPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNPRLSGASPMT 330 (493)
T ss_pred cCC---CCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeCCcccccccc
Confidence 876 68999999999999999998 899999999999854589999999999987 4544
No 40
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.96 E-value=4.8e-28 Score=276.79 Aligned_cols=239 Identities=15% Similarity=0.034 Sum_probs=173.8
Q ss_pred CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhh
Q 002207 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~ 242 (953)
.+-++|... ||++|++||.+||||+|+++.++++||||..+|++++++|||||++..+...+. .++....+.
T Consensus 106 ~~~~~fl~~------DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~--eel~~~~~~ 177 (493)
T PRK06524 106 GGKACFVMF------DEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSY--DELSALAHG 177 (493)
T ss_pred CCceEEecC------CHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCH--HHHHHHHHh
Confidence 355666654 999999999999999999999999999999999999999999999987532221 112222111
Q ss_pred cCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecc
Q 002207 243 NKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP 322 (953)
Q Consensus 243 ~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~ 322 (953)
..++|||||||+.+|||+|+++|++.+|+.+.+.+++. ++.++||+||.| +|++|.++.+.+|. .+...+
T Consensus 178 ---~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~---~~~viVEe~I~G-rEitVev~vd~dG~---Vv~~~~ 247 (493)
T PRK06524 178 ---AGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG---QPEIKVMKRIRN-VEVCIEACVTRHGT---VIGPAM 247 (493)
T ss_pred ---ccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC---CCCEEEEeccCc-EEEEEEEEEeCCCC---EEeccc
Confidence 12689999999999999999999999998877665432 367999999997 99999988654332 111111
Q ss_pred eEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh---CCCCeeEeeeeecCCCCc
Q 002207 323 TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL---GLCDFARIDGWFLPSSTH 399 (953)
Q Consensus 323 ~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL---g~~G~arVDf~~~~~~~~ 399 (953)
.++. + ..++.. |..+....+.+|+.+++++.++++++|.+++++| ||+|++||||++
T Consensus 248 ~e~v--g--------~~Ei~~----yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfv------ 307 (493)
T PRK06524 248 TSLV--G--------YPELTP----YRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLH------ 307 (493)
T ss_pred cccc--c--------ceEEEE----ccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEE------
Confidence 1110 0 001222 3322212457899999999999999999999998 899999999987
Q ss_pred cccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 400 VFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 400 ~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
++ +|++||+||||+|+-+ +.+-.++..+|.+++..+-.+.
T Consensus 308 -----------d~ddgevYfnEINPR~~G~--tpmt~~~s~Agad~p~fllh~~ 348 (493)
T PRK06524 308 -----------DLDADELYLGEVNPRLSGA--SPMTNLTTEAYADMPLFLFHLL 348 (493)
T ss_pred -----------ECCCCeEEEEEEeCCcccc--cccchhhhccCCChhHHHHHHH
Confidence 43 5889999999999852 1122233345676666654443
No 41
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.96 E-value=1.7e-27 Score=283.81 Aligned_cols=294 Identities=17% Similarity=0.113 Sum_probs=211.1
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+||.|| ++|+.++.++++.||+|+.++.+++...... .|..+ .. .+... +.
T Consensus 22 ~k~IgIIGgG---------qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~----------AD~~~-v~----~~~D~-~~ 76 (577)
T PLN02948 22 ETVVGVLGGG---------QLGRMLCQAASQMGIKVKVLDPLEDCPASSV----------AARHV-VG----SFDDR-AA 76 (577)
T ss_pred CCEEEEECCC---------HHHHHHHHHHHHCCCEEEEEeCCCCCchhhh----------Cceee-eC----CCCCH-HH
Confidence 3689999999 4589999999999999998876654211110 00000 00 00000 11
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
...+..++|++....+... ......|+..|+| +++++.+..+|+||+.+|++|+++|||||+|..+.+.+ ++
T Consensus 77 l~~~a~~~dvIt~e~e~v~---~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~----el 148 (577)
T PLN02948 77 VREFAKRCDVLTVEIEHVD---VDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLE----SA 148 (577)
T ss_pred HHHHHHHCCEEEEecCCCC---HHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHH----HH
Confidence 1222335899877665432 2233788999998 57899999999999999999999999999999886543 23
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
.+..+ .++||+||||+++| +|.|+.++++.+|+.+....++ .++..+|||+||+|.+|++|.++++.+|
T Consensus 149 ~~~~~-----~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~--~~~~~vlvEefI~~~~EisV~v~r~~~G--- 218 (577)
T PLN02948 149 EKAGD-----LFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALG--GFERGLYAEKWAPFVKELAVMVARSRDG--- 218 (577)
T ss_pred HHHHH-----hcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhh--CCCCcEEEEecCCCCeEEEEEEEECCCC---
Confidence 23222 37899999999988 5999999999999876665543 3677899999999779999999975332
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
.....+..|... .+.++ .....|+.+++++.++++++|.+++++||++|++|||||+
T Consensus 219 ~i~~~p~~E~~~----------~~~~~-----------~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv-- 275 (577)
T PLN02948 219 STRCYPVVETIH----------KDNIC-----------HVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFL-- 275 (577)
T ss_pred CEEEecCcccEE----------ECCee-----------EEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEE--
Confidence 233333333211 11111 1235799999999999999999999999999999999987
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++|++||+||||+||.+.+.. . .++|+| +++..|+.++..
T Consensus 276 ---------------~~dG~v~v~EInpRpg~sGh~t-~---ea~~~s---~fe~~vRa~lGl 316 (577)
T PLN02948 276 ---------------LKDGQILLNEVAPRPHNSGHYT-I---EACYTS---QFEQHLRAVLGL 316 (577)
T ss_pred ---------------cCCCcEEEEEEeCCCCCCCcee-e---ecccCC---HHHHHHHHHcCC
Confidence 6788999999999999876532 1 466775 466667776665
No 42
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.96 E-value=3.3e-27 Score=296.84 Aligned_cols=342 Identities=19% Similarity=0.181 Sum_probs=241.4
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc-----ccccCcchhHHHh-hccCcCEEEEcC
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL-----AQGFGSLSEFAEH-LAANVDIVFPTI 171 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~D~vf~~l 171 (953)
|..|++++++.|++++.++.+.+-....... +|..+.+... .........+... ...++|+|+|.
T Consensus 11 a~ri~ra~~elGi~tVav~s~~D~~s~~~~~--------ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PG- 81 (1143)
T TIGR01235 11 AIRVFRAANELGIRTVAIYSEEDKLSLHRQK--------ADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPG- 81 (1143)
T ss_pred HHHHHHHHHHcCCEEEEEECcccccCcchhh--------cCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEEC-
Confidence 7779999999999999998765532111100 1111111000 0000011111111 23479999997
Q ss_pred CCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--ecCCccchhhhhhhhhhcCCCCCC
Q 002207 172 HGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSEVNESELSNWFVTNKLDPNS 249 (953)
Q Consensus 172 hG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~~~~~~~~~~~~~~~~~~~l~~~~ 249 (953)
+|...|+..++..|+..|++|+|+++.++.++.||..++++++++|||+||+.. +.+. +++.++.+ .++
T Consensus 82 yGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~----eea~~~ae-----~iG 152 (1143)
T TIGR01235 82 YGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETM----EEVLDFAA-----AIG 152 (1143)
T ss_pred CCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCH----HHHHHHHH-----HcC
Confidence 577889999999999999999999999999999999999999999999999753 2222 22333332 368
Q ss_pred CcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEE
Q 002207 250 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEV 325 (953)
Q Consensus 250 ~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei 325 (953)
||+||||+.+|+|+|+.+|++.+|+.+.......+ -.++.++||+||+|++|++|.+++++.|+ .+.+.. .
T Consensus 153 yPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~---vv~l~e--R 227 (1143)
T TIGR01235 153 YPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGN---VVHLFE--R 227 (1143)
T ss_pred CCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCC---EEEEEe--c
Confidence 99999999999999999999999876655443211 12568999999998899999999865443 222111 0
Q ss_pred EEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcccccc
Q 002207 326 ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSS 404 (953)
Q Consensus 326 ~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~ 404 (953)
+ +.....+. ......|+ .+++++.++|++.|.+++++||++|.++|||++
T Consensus 228 -------------d--csvqrr~q---k~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlv----------- 278 (1143)
T TIGR01235 228 -------------D--CSVQRRHQ---KVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLV----------- 278 (1143)
T ss_pred -------------c--ccccccCc---eEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE-----------
Confidence 0 01111111 13345676 599999999999999999999999999999986
Q ss_pred ccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCC---CCCCC-----Ccceeccccc
Q 002207 405 ETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN---LASYN-----SVSSHLPGRS 476 (953)
Q Consensus 405 ~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~---~~~~~-----~~~~~~~~~~ 476 (953)
+++|++||+||||+++.+. +.....+|++ +++.+|+.|....-. +..+. -.+++|++|+
T Consensus 279 ------d~dg~~yfIEVNPRiqveh----~vTe~vtGiD---lv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri 345 (1143)
T TIGR01235 279 ------DNDGKFYFIEVNPRIQVEH----TVTEEITGID---IVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRV 345 (1143)
T ss_pred ------eCCCcEEEEEeecCCCcch----hHHHHHhCcH---HHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEE
Confidence 5678899999999998653 2233467985 566777777654211 11111 2479999999
Q ss_pred ccCCCccccccCCCceEEEEecCCCccc
Q 002207 477 SGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 477 ~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
.+++|...|+|.+|++..+...||.+..
T Consensus 346 ~~edp~~~f~p~~g~i~~~~~~~g~gvr 373 (1143)
T TIGR01235 346 TTEDPANNFQPDTGRIEAYRSAGGFGIR 373 (1143)
T ss_pred eeecCCCCcccCCcEeeEEecCCCCCeE
Confidence 9999999999999999998888887654
No 43
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.96 E-value=7e-27 Score=266.37 Aligned_cols=366 Identities=18% Similarity=0.183 Sum_probs=265.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (953)
+||+|.-.|- .|-.+.+++++.|++.+.++-+.+-..++..- +|-...+.+ .......+..
T Consensus 3 ~kiLIanrGe---------ia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~--------adeav~i~~~~~~~syl~i~~ 65 (449)
T COG0439 3 KKILIANRGE---------IAVRIIRACRELGIETVAVYSEADADALHVAL--------ADEAVCIGPAPSADSYLNIDA 65 (449)
T ss_pred ceEEEecCch---------hHHHHHHHHHHhCCeEEEEeccccccchhhhh--------CceEEEcCCccchhhhhhHHH
Confidence 5788887554 38889999999999998887555533322111 111111110 0000000111
Q ss_pred H-HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 156 F-AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 156 ~-~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
. ........|.|+|... ..-||..++++++..|+-|+|+++.+++.+.||..++++++++|+|++|+.-- .-...+
T Consensus 66 ii~~a~~~gadai~pGyg-flsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~--~~~~~e 142 (449)
T COG0439 66 IIAAAEETGADAIHPGYG-FLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDG--AVADNE 142 (449)
T ss_pred HHHHHHhcCCceEcccch-hhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCC--CcCCHH
Confidence 1 1112347899999885 77799999999999999999999999999999999999999999999998721 111122
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC----CCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----IDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~----~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
++.++.+ .++|||||||+.||+|+||++|++.+|+.+.......+. .++.+++|+||++.+.+.+.|++|+
T Consensus 143 e~~~~a~-----~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~ 217 (449)
T COG0439 143 EALAIAE-----EIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDG 217 (449)
T ss_pred HHHHHHH-----HcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcC
Confidence 3444443 367999999999999999999999999876665543321 2566999999999789999999876
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
.++. + ..+|. + . +-+...++..+..|+. ++++.++++-+.|.++.+.+|.+|.+.+
T Consensus 218 ~g~~---i--~l~eR-------------d--c---siqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtv 274 (449)
T COG0439 218 HGNV---I--HLGER-------------D--C---SIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTV 274 (449)
T ss_pred cccE---E--EEEec-------------c--C---CCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 6542 1 11111 1 0 1112233456677886 8899999999999999999999999999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCC--CC
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY--NS 467 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~--~~ 467 (953)
+|++ +.+|++||+|+||+-+.... ..-..+|+ +|++.+|+.|+...-+++.. ..
T Consensus 275 Efl~-----------------~~~~~~yfiEmN~Rlqveh~----vte~vtGi---Dlv~~qi~ia~ge~l~~~q~~~~~ 330 (449)
T COG0439 275 EFLY-----------------DSNGEFYFIEMNTRLQVEHP----VTEMVTGI---DLVKEQIRIAAGEPLSLKQEDIKF 330 (449)
T ss_pred EEEE-----------------eCCCCEEEEEEecccccCcc----ceehhhhh---hHHHHHHHHHcCCCCCCCCCcccc
Confidence 9986 44688999999998876543 23346788 67888899988854444431 11
Q ss_pred cceecccccccCCCccccccCCCceEEEEecCCCcccceeccccHHHH
Q 002207 468 VSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNV 515 (953)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~~s~~~v 515 (953)
.+|++++|+..+++..+|.+++++++-....||.....+..+.++..|
T Consensus 331 ~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i 378 (449)
T COG0439 331 RGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRV 378 (449)
T ss_pred cceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCccc
Confidence 369999999999998889999999999999999998877777766654
No 44
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.96 E-value=7.2e-27 Score=270.24 Aligned_cols=243 Identities=16% Similarity=0.155 Sum_probs=181.3
Q ss_pred cCcCEEEEcCCCCCCCchHHH---HHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQ---EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq---~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++ .+|++.++ ..|+.+|+|+.|++..++.+++||..+|++|+++|||||++..+.+.+. +.+
T Consensus 67 ~~iD~Vv~-----g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~e----a~~ 137 (426)
T PRK13789 67 NPFDLIVV-----GPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSS----SLS 137 (426)
T ss_pred cCCCEEEE-----CCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHH----HHH
Confidence 47999997 34787665 4566699999999999999999999999999999999999988865432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC----CCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----IDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~----~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++ .++||+||||..+++|+||.+|++.+|+.+.+.+++... .+..+||||||+| +|+++.++.++
T Consensus 138 ~~~-----~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg---- 207 (426)
T PRK13789 138 YLE-----SEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG-QEASIFAISDG---- 207 (426)
T ss_pred HHH-----hcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-eEEEEEEEECC----
Confidence 332 367899999999999999999999999887777665311 1348999999998 99999999632
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHH-HHHHHH---HHhC--CCCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIRE-GASLLF---QRLG--LCDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~-~a~~~~---~aLg--~~G~a 387 (953)
....++++.+- ...+||++.++..++ +...+|++ +++++.+++++ ++.++. +++| ++|+.
T Consensus 208 ~~~~~lp~~~d------------~k~~~d~d~g~~tgg-mg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl 274 (426)
T PRK13789 208 DSYFLLPAAQD------------HKRAFDGDQGPNTGG-MGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLL 274 (426)
T ss_pred CEEEEccceEe------------cccccCCCCCCCCCC-ceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 12333443321 356889998887665 56668886 68888888864 444444 5556 78999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
++||++ +++|++||+|+|++||.+.+..+.. ..+. +|++.++..+..+.
T Consensus 275 ~~e~~i-----------------t~~g~~~vlE~n~R~Gdpe~~~ll~---~l~~---dl~~~~~~~~~g~l 323 (426)
T PRK13789 275 YAGLMI-----------------SPEGEPKVVEFNCRFGDPETQCVLA---MLDG---DLLELLYAASTGKI 323 (426)
T ss_pred EEEEEE-----------------cCCCCEEEEEEecCCCCcHhhhhhc---cCCC---CHHHHHHHHHcCCC
Confidence 999986 6788899999999999877543321 1233 55665566555543
No 45
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.95 E-value=7.9e-27 Score=256.59 Aligned_cols=302 Identities=18% Similarity=0.160 Sum_probs=219.0
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
+.|+|+..++| +. ||.+++++|+++||.|+.+.- + |+.++.+..-....++++....+. ..
T Consensus 4 g~i~Igqa~ef-----dy---sG~qac~aLkeeg~~vvlvns--n-------pAti~td~e~AD~~y~eP~~~E~v--~~ 64 (400)
T COG0458 4 GPIVIGQAAEF-----DY---SGTQACKALKEEGYGVVLVNS--N-------PATIMTDPELADKVYIEPITKEPV--EK 64 (400)
T ss_pred CceeeEeeeee-----ch---hHHHHHHHHHhcCCeEEEEcC--C-------CccccCCchhcceeeeecCcHHHH--HH
Confidence 45778766654 44 399999999999999987653 2 223332221122334444332110 11
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCcc
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~ 231 (953)
++ .++++|.++|.+.|+.+++-.+ .+.|+.+||+.+|++..+..+|.||+++|++|+++|+|+| +......+.
T Consensus 65 Ii--~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e 141 (400)
T COG0458 65 II--EKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEE 141 (400)
T ss_pred HH--HhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccHHH
Confidence 11 2568999999999999988543 4689999999999999999999999999999999999999 443333222
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
. .+.. +..+|||||||+.+-+|.|..+++|.+|+.+.+...+...+..++|+|++|.||+|++..|+.+..
T Consensus 142 ~----~~~~-----~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~ 212 (400)
T COG0458 142 A----DEIA-----DEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESIIGWKEFEYEVVRDGK 212 (400)
T ss_pred H----hhhH-----hhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeecCceEEEEEEEEeCC
Confidence 1 1111 247899999999999999999999999998888877665666799999999999999999999865
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
+| +++.+. .+.+|-..-+. + .+....|++ +++..++.++..+.++.+.||..|-++||
T Consensus 213 ~n---~ivvc~----------------men~dp~gvht-g-dsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ 271 (400)
T COG0458 213 DN---CIVVCN----------------MENLDPMGVHT-G-DSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQ 271 (400)
T ss_pred CC---EEEEEe----------------CCccccccccc-c-ceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 54 333222 12233333332 2 256678887 78889999999999999999999999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHH
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 449 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~ 449 (953)
|.+++ ..|++||+||||+++ .+|-+ ..+++|+....+..
T Consensus 272 ~av~~----------------~~~~~~viEvNpRvS--rssaL--askAtgypia~vaa 310 (400)
T COG0458 272 FAVDP----------------GGGELYVIEINPRVS--RSSAL--ASKATGYPIAKVAA 310 (400)
T ss_pred EEEcC----------------CCceEEEEEecCCcC--cchhh--hhhccCChHHHHHH
Confidence 98732 346999999998665 55543 34567765544433
No 46
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.95 E-value=3.2e-26 Score=289.53 Aligned_cols=354 Identities=17% Similarity=0.163 Sum_probs=247.0
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc---cccCcc
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA---QGFGSL 153 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 153 (953)
.+||+|+-.|.. |..+++++++.|++++.++.+.+........ +|..+.+.... ..+...
T Consensus 5 ~kkvLianrGei---------avri~raa~elGi~~Vav~s~~D~~a~~~~~--------ADe~~~i~~~~~~~~~Yldi 67 (1146)
T PRK12999 5 IKKVLVANRGEI---------AIRIFRAATELGIRTVAIYSEEDKLSLHRFK--------ADEAYLIGEGKHPVRAYLDI 67 (1146)
T ss_pred ccEEEEECCcHH---------HHHHHHHHHHcCCEEEEEECCCCcCCchHHh--------CCEEEEcCCCCCcccCccCH
Confidence 357888887754 7789999999999999887765532111100 11011110000 000011
Q ss_pred hhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--ecCCc
Q 002207 154 SEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSE 230 (953)
Q Consensus 154 ~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~~~~~ 230 (953)
..+.+. ...++|.|+|.. |...|+..++..++.+|++|+|+++.++.++.||..++++++++|||+||+.. +.+.+
T Consensus 68 d~Ii~iAk~~~iDaI~Pgy-GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~e 146 (1146)
T PRK12999 68 DEIIRVAKQAGVDAIHPGY-GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIE 146 (1146)
T ss_pred HHHHHHHHHhCCCEEEeCC-CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHH
Confidence 111111 234799999964 66778888899999999999999999999999999999999999999988764 33322
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEE
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIV 306 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~V 306 (953)
++.++.+ .++||+||||+.+|+|.|+.+|++.+|+.+.......+ . .++.++||+||+|.+|+++.+
T Consensus 147 ----ea~~~a~-----~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqv 217 (1146)
T PRK12999 147 ----EALEFAE-----EIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQI 217 (1146)
T ss_pred ----HHHHHHH-----HhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEE
Confidence 2333332 37899999999999999999999999876655443221 1 256899999999878999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCC
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCD 385 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G 385 (953)
++++.|+ .+.+... .......+ .......|+ .+++++.++|++.|.++++++|++|
T Consensus 218 l~D~~G~---vv~l~er-----------------dcsvqrr~---qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G 274 (1146)
T PRK12999 218 LGDKHGN---VVHLYER-----------------DCSVQRRH---QKVVEIAPAPGLSEELRERICEAAVKLARAVGYVN 274 (1146)
T ss_pred EEECCCC---EEEEEcc-----------------ccceeecC---ccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9865443 2221110 00111111 112334666 5899999999999999999999999
Q ss_pred eeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCC---
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL--- 462 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~--- 462 (953)
.+++||++ +++|++||+||||+++.+. +.....+|++ ++..+|+.|+..-...
T Consensus 275 ~gtVEflv-----------------d~dg~~yfIEINpRlqveh----~vte~~tGvD---lv~~~iriA~G~~l~~~~~ 330 (1146)
T PRK12999 275 AGTVEFLV-----------------DADGNFYFIEVNPRIQVEH----TVTEEVTGID---IVQSQILIAEGATLHDLEI 330 (1146)
T ss_pred eEEEEEEE-----------------ECCCCEEEEEEECCCCCcc----hHHHHHhCcC---HHHHHHHHHCCCCCCcccc
Confidence 99999987 5677899999999998542 2233467996 5677777777653221
Q ss_pred --CCC---CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 463 --ASY---NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 463 --~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
+.. ...+++|+||+.+++|...|.+..+++.-.-..||...+
T Consensus 331 ~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr 377 (1146)
T PRK12999 331 GIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVR 377 (1146)
T ss_pred ccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEE
Confidence 111 123699999999999999999999998877667776544
No 47
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.95 E-value=2e-26 Score=294.11 Aligned_cols=306 Identities=16% Similarity=0.132 Sum_probs=221.7
Q ss_pred CcCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
.++||+||++|+ +.|+|+| +.+++++|++.||+|+.++.+++.. +..- ...| .++.++.. .
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~---~v~~i~alk~~G~~vi~v~~npetv----s~~~----~~aD-~~y~e~~~--~ 618 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYC---CVHAVLALREAGYETIMVNCNPETV----STDY----DTSD-RLYFEPLT--L 618 (1066)
T ss_pred CCceEEEECccccccccccccchh---HHHHHHHHHHCCCEEEEEeCCcccc----cccc----chhh-heeecCCC--H
Confidence 457999998765 7899997 7788999999999999876555421 0000 0000 01111111 0
Q ss_pred CcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCc
Q 002207 151 GSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE 230 (953)
Q Consensus 151 ~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~ 230 (953)
..+.++.+ .+++|.|++.+.|..+. .+...|+.+|+|++|+++.++.+|+||..++++|+++|||+|++..+.+.+
T Consensus 619 e~v~~i~~--~e~~dgVi~~~g~~~~~--~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~e 694 (1066)
T PRK05294 619 EDVLEIIE--KEKPKGVIVQFGGQTPL--KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVE 694 (1066)
T ss_pred HHHHHHHH--HcCCCEEEEEeCchhHH--HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHH
Confidence 00111221 35899999999877653 567889999999999999999999999999999999999999999887643
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
+ +.++.+ .++||+||||..+++|.|+.+|+|.+|+...+.+.+....+..+|||+||+|.+|++|.++.++
T Consensus 695 e----~~~~~~-----~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg 765 (1066)
T PRK05294 695 E----ALEVAE-----EIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDG 765 (1066)
T ss_pred H----HHHHHH-----hcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecC
Confidence 2 223332 3689999999999999999999999998877666544345678999999998339999999642
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC-CCCCHHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP-PRFPIVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P-a~l~~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
. ...+....+.. . ......+. +....| ..++++..+++++++.+++++||++|+++|
T Consensus 766 --~--~v~i~~i~e~i----------------~-~~gv~~Gd-s~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~v 823 (1066)
T PRK05294 766 --E--DVLIGGIMEHI----------------E-EAGVHSGD-SACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNV 823 (1066)
T ss_pred --C--eEEEeeeEEee----------------e-eccccCCC-CcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEE
Confidence 1 12221222110 0 01112222 334445 469999999999999999999999999999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
||++ + +|++||+||||+++ ..+|.+.+++|+++.+++.+++
T Consensus 824 qf~~-----------------~-~~~~yViEiNpR~s----~t~~~~s~atGi~~~~~~~~~~ 864 (1066)
T PRK05294 824 QFAV-----------------K-DDEVYVIEVNPRAS----RTVPFVSKATGVPLAKIAARVM 864 (1066)
T ss_pred EEEE-----------------E-CCeEEEEEEecCCC----ccHHHHHHHhCccHHHHHHHHH
Confidence 9986 3 56799999999986 3467788899999888775543
No 48
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.95 E-value=3.5e-26 Score=290.85 Aligned_cols=304 Identities=13% Similarity=0.116 Sum_probs=221.5
Q ss_pred CcCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
.++||+||.+|+ +.|+|++ +.+++++|++.||+|+.++.+++......+ ..| .++.++..
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~---~v~~i~al~~~G~~vI~v~~npetvs~d~~--------~~D-~ly~ep~~--- 617 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYC---CVHAVLALRELGYETIMINYNPETVSTDYD--------TSD-RLYFEPLT--- 617 (1050)
T ss_pred CCceEEEecCcccccccccccchH---HHHHHHHHHhCCCEEEEEecCCcccccccc--------ccc-eEEEecCC---
Confidence 456999998764 7899996 889999999999999988765542100000 000 01111111
Q ss_pred CcchhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCC
Q 002207 151 GSLSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229 (953)
Q Consensus 151 ~~~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~ 229 (953)
...+... ..+++|.|++.++|..+ -.+...|+.+|+|++|+++.++..|.||..++++|+++|||+|++..+.+.
T Consensus 618 --~e~vl~i~~~e~idgVI~~~gg~~~--~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ 693 (1050)
T TIGR01369 618 --FEDVMNIIELEKPEGVIVQFGGQTP--LNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV 693 (1050)
T ss_pred --HHHHHHHHhhcCCCEEEEccCcHhH--HHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH
Confidence 1111111 13579999999877543 246778899999999999999999999999999999999999999998764
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++ +.++.+ .++||+||||..+++|.|+.+|+|.+|+.+...+++....+..+|||+||+||+|+++.++.+
T Consensus 694 ee----~~~~~~-----~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d 764 (1050)
T TIGR01369 694 EE----AVEFAS-----EIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSD 764 (1050)
T ss_pred HH----HHHHHH-----hcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEe
Confidence 42 333332 368999999999999999999999999887777655434556799999999559999999964
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
+ +..++....|.. . ......+. +....|+ .+++++.++|++++.+++++||++|.++
T Consensus 765 ~----g~v~i~~i~e~~----------------~-~~gv~sGd-s~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~ 822 (1050)
T TIGR01369 765 G----EEVLIPGIMEHI----------------E-EAGVHSGD-STCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMN 822 (1050)
T ss_pred C----CEEEEEEEEEee----------------c-ccCCcCCC-ceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEE
Confidence 2 222222222210 0 11112222 4455676 6899999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
|||++ + +|++|++|||++++ ..+|.+.+++|+++.+++.++
T Consensus 823 vqf~~-----------------~-~~~~yvIEvNpR~s----~t~p~vs~atGi~l~~~~~~~ 863 (1050)
T TIGR01369 823 IQFAV-----------------K-DGEVYVIEVNPRAS----RTVPFVSKATGVPLIKLATRV 863 (1050)
T ss_pred EEEEE-----------------E-CCeEEEEEEeCCCC----chHHHHHHHHCCCHHHHHHHH
Confidence 99986 3 56799999999986 345777889999987776444
No 49
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.94 E-value=2.1e-25 Score=261.91 Aligned_cols=307 Identities=16% Similarity=0.171 Sum_probs=208.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc--ccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL--AQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (953)
+||+||.+|.. |..+++++++.||+++.++.+.+........ .|..+.+.+. ...+.....
T Consensus 3 ~~ililg~g~~---------~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~--------ad~~~~~~~~~~~~~~~d~~~ 65 (450)
T PRK06111 3 QKVLIANRGEI---------AVRIIRTCQKLGIRTVAIYSEADRDALHVKM--------ADEAYLIGGPRVQESYLNLEK 65 (450)
T ss_pred ceEEEECCcHH---------HHHHHHHHHHcCCeEEEEechhhccCcchhh--------CCEEEEcCCCCccccccCHHH
Confidence 58999998876 7888899999999999876544321111100 0000000000 000000011
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|+|. +|...|++.++..|+.+|+|++|+++.++.++.||..+|++|+++|||+|++. .+.+.
T Consensus 66 l~~~~~~~~id~I~p~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~--- 141 (450)
T PRK06111 66 IIEIAKKTGAEAIHPG-YGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDA--- 141 (450)
T ss_pred HHHHHHHhCCCEEEeC-CCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCH---
Confidence 1111 23478999997 46678888899999999999999999999999999999999999999999973 33221
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.++.++.+ .++||+||||+.+++|.||.++++.+|+.+....... ...++.++||+||+|++|+++.++.
T Consensus 142 -~e~~~~~~-----~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 215 (450)
T PRK06111 142 -EEAIAIAR-----QIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLA 215 (450)
T ss_pred -HHHHHHHH-----HhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEE
Confidence 22333332 3678999999999999999999999997766554221 1135689999999987899999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+.+|+ .+.+.+.+. .+.....+ .....|+. +++++.+++++.+.+++++||++|++
T Consensus 216 ~~~g~---~~~~~~~~~--------------~~~~~~~~------~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~ 272 (450)
T PRK06111 216 DTHGN---TVYLWEREC--------------SVQRRHQK------VIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAG 272 (450)
T ss_pred cCCCC---EEEEEeecc--------------cccccccc------eEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCce
Confidence 54332 222111110 01110001 11123443 78899999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++||++ +++|++||+|||++++.+ ++....++|+++. +.+++.++..
T Consensus 273 ~ve~~~-----------------~~~g~~~viEiN~R~~~~----~~~~~~~~Gvd~~---~~~i~~~~G~ 319 (450)
T PRK06111 273 TIEFLV-----------------DEQKNFYFLEMNTRLQVE----HPVTEEITGIDLV---EQQLRIAAGE 319 (450)
T ss_pred eEEEEE-----------------cCCCCEEEEEEECCcCCc----chhhHHHhCcCHH---HHHHHHhcCC
Confidence 999986 567789999999999743 3455567899764 4455565654
No 50
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.94 E-value=7e-25 Score=278.97 Aligned_cols=343 Identities=17% Similarity=0.187 Sum_probs=235.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (953)
+||+|+.+|.. |..+++++++.|++++.++.+.+........+ |..+.+.+ ..........
T Consensus 2 ~kvLI~g~Gei---------a~~iiraak~lGi~~v~v~sd~d~~a~~v~~A--------D~~v~l~~~~~~~sy~d~e~ 64 (1201)
T TIGR02712 2 DTVLIANRGEI---------AVRIIRTLRRMGIRSVAVYSDADAASQHVLDA--------DEAVCLGGAPAAESYLDIDK 64 (1201)
T ss_pred cEEEEECCCHH---------HHHHHHHHHHcCCeEEEEECCCCCCccchhhC--------CEEEEcCCCCcccCCCCHHH
Confidence 48999987765 88899999999999998887665322111101 10010100 0000101111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE-EecCCccch
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNE 233 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~-~~~~~~~~~ 233 (953)
+.+. ...++|+|+|.. |...|+..++..|+.+|++|+|+++.++.++.||..+|++|+++|||++++. .+.+.+
T Consensus 65 Il~~a~~~~idaIiPG~-gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~d--- 140 (1201)
T TIGR02712 65 ILAAAKKTGAQAIHPGY-GFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSLD--- 140 (1201)
T ss_pred HHHHHHHHCCCEEEeCC-cccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCHH---
Confidence 1111 234799999976 5678899999999999999999999999999999999999999999998854 444322
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++.++.+ .++||+||||..+++|+||.+|++.+|+.+....... ...+..++||+||+|++|+++.++++
T Consensus 141 -ea~~~a~-----~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~D 214 (1201)
T TIGR02712 141 -EALEAAK-----EIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGD 214 (1201)
T ss_pred -HHHHHHH-----hcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEEC
Confidence 2223222 3689999999999999999999999987655443321 11245799999999779999999975
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
+.+ ..+. .++... .+..+. ......+|+ .+++++.++|++.|.+++++||++|.++
T Consensus 215 g~g---~vv~--lg~rd~------------s~qr~~------~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~ 271 (1201)
T TIGR02712 215 GKG---KVVA--LGERDC------------SLQRRN------QKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGT 271 (1201)
T ss_pred CCC---eEEE--eeEEEe------------eeEecC------ccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEE
Confidence 433 2222 222110 011111 113344676 4899999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCC---
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASY--- 465 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~--- 465 (953)
|||+++ ..+|++||+||||+++.+ .|.....+|+++ ++.+++.|+.....+...
T Consensus 272 VEfild----------------~~~g~~y~lEVNpRlq~~----~~lte~~tGvDl---ve~~ir~a~G~~~~~~~~~~~ 328 (1201)
T TIGR02712 272 VEFIYD----------------EARDEFYFLEVNTRLQVE----HPVTEMVTGLDL---VEWMIRIAAGELPDFASLNIS 328 (1201)
T ss_pred EEEEEE----------------CCCCCEEEEEEECCcCcc----hhhHHHHhCCCH---HHHHHHHHcCCCCCccccccc
Confidence 999872 235789999999999754 244445789964 556677777654332211
Q ss_pred -CCcceecccccccCCCccccccCCCceE
Q 002207 466 -NSVSSHLPGRSSGSKPTEALNKREGIRE 493 (953)
Q Consensus 466 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (953)
...++++..|+.++++...|.++.+..+
T Consensus 329 ~~~~g~ai~~riyae~p~~~~~p~~G~l~ 357 (1201)
T TIGR02712 329 LTPRGAAIEARVYAENPAKNFQPSPGLLT 357 (1201)
T ss_pred cccceEEEEEEEeccCcccCcCCCCceee
Confidence 2346899999998888777777666654
No 51
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.94 E-value=3.3e-25 Score=253.39 Aligned_cols=279 Identities=18% Similarity=0.107 Sum_probs=193.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
++|+||.||+. |+.++.++++.||+|+.++.+++..... .. +..+ . ..+. ..+..
T Consensus 3 ~~igilG~Gql---------~~ml~~aa~~lG~~v~~~d~~~~~pa~~------~a----d~~~-~----~~~~-D~~~l 57 (372)
T PRK06019 3 KTIGIIGGGQL---------GRMLALAAAPLGYKVIVLDPDPDSPAAQ------VA----DEVI-V----ADYD-DVAAL 57 (372)
T ss_pred CEEEEECCCHH---------HHHHHHHHHHcCCEEEEEeCCCCCchhH------hC----ceEE-e----cCCC-CHHHH
Confidence 57999999974 7888899999999999886555422111 00 0000 0 0000 01122
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+...+|+|-.-+. --+...-..++.. ..+++++.+..+++||..+|++|+++|||+|++..+.+.+. +.
T Consensus 58 ~~~a~~~dvit~e~e---~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~----l~ 128 (372)
T PRK06019 58 RELAEQCDVITYEFE---NVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAED----LE 128 (372)
T ss_pred HHHHhcCCEEEeCcC---CCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHHH----HH
Confidence 223347898754332 1122222334444 34679999999999999999999999999999999876432 33
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
++.+ .++||+||||+++| +|.|+.++++.+|+.+....+ .+..+|||+||++++|+++.++++.+ +.
T Consensus 129 ~~~~-----~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~----~~~~~ivEe~I~~~~E~sv~~~~~~~---G~ 196 (372)
T PRK06019 129 AALA-----DLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL----GSVPCILEEFVPFEREVSVIVARGRD---GE 196 (372)
T ss_pred HHHH-----HcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc----CCCCEEEEecCCCCeEEEEEEEECCC---CC
Confidence 3322 36889999999976 699999999999977665543 34689999999966999999887433 33
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.++.++.|... .+++++ ....|+.+++++.+++++++.+++++||+.|+.+||||+
T Consensus 197 ~~~~p~~e~~~----------~~gi~~-----------~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~--- 252 (372)
T PRK06019 197 VVFYPLVENVH----------RNGILR-----------TSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFV--- 252 (372)
T ss_pred EEEeCCcccEE----------eCCEEE-----------EEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEE---
Confidence 44444443221 111211 234788999999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~ 444 (953)
+++|++||+||||+|+-+.+.. -.++|+|.
T Consensus 253 --------------~~dg~~~v~EinpR~~~sg~~t----~~~~~~sq 282 (372)
T PRK06019 253 --------------TGDGELLVNEIAPRPHNSGHWT----IEACSTSQ 282 (372)
T ss_pred --------------cCCCeEEEEEecCCccCcccEE----hhhcCccH
Confidence 5788999999999998654321 24567764
No 52
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.94 E-value=3.7e-25 Score=251.51 Aligned_cols=289 Identities=20% Similarity=0.170 Sum_probs=197.3
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
+|+||.||+. ++.++.++++.||+|+.++.+++..... . .|..+ ... + .-.+.+.
T Consensus 1 ~igiiG~gql---------~~~l~~aa~~lG~~v~~~d~~~~~p~~~------~----ad~~~-~~~----~-~d~~~i~ 55 (352)
T TIGR01161 1 TVGILGGGQL---------GRMLALAARPLGIKVHVLDPDANSPAVQ------V----ADHVV-LAP----F-FDPAAIR 55 (352)
T ss_pred CEEEECCCHH---------HHHHHHHHHHcCCEEEEECCCCCCChhH------h----CceeE-eCC----C-CCHHHHH
Confidence 4899999865 7888999999999999876554421110 0 01000 000 0 0011222
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.+...+|++-.-. . .-+......|+..|+| +++++.++.+++||..+|++|+++|||+|++..+.+.+ ++.+
T Consensus 56 ~~a~~~dvit~e~-e--~i~~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~----~~~~ 127 (352)
T TIGR01161 56 ELAESCDVITFEF-E--HVDVEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEE----ELDA 127 (352)
T ss_pred HHHhhCCEEEeCc-C--cCCHHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHH----HHHH
Confidence 2334678764322 1 1123344667888887 56899999999999999999999999999999987643 2333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
+.+ .++||+||||..+| +|.|+.++++.+|+.+..... .+..+||||||+|++|+++.++.+.+| ..
T Consensus 128 ~~~-----~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~I~~~~E~sv~~~~~~~G---~~ 195 (352)
T TIGR01161 128 ALQ-----ELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKEL----GDRECIVEEFVPFERELSVIVARSADG---ET 195 (352)
T ss_pred HHH-----HcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhc----CCCcEEEEecCCCCeEEEEEEEEcCCC---CE
Confidence 332 36789999999987 799999999999977655542 245899999999669999999864332 33
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCC
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~ 397 (953)
.+.++.+... ..+++ .....|+.+++++.+++++++.+++++||+.|+.+|||++
T Consensus 196 ~~~~~~~~~~----------~~g~~-----------~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~---- 250 (352)
T TIGR01161 196 AFYPVVENIH----------QDGIL-----------RYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFV---- 250 (352)
T ss_pred EEECCcccEE----------eCCEE-----------EEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEE----
Confidence 3334332110 00111 1234788999999999999999999999999999999986
Q ss_pred CccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 398 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 398 ~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+++|++||+||||+||-+.+.. ...++.|. ++..++.++.
T Consensus 251 -------------~~dg~~~v~EinpR~~~sg~~~----~~~~~~s~---f~~~~ra~~g 290 (352)
T TIGR01161 251 -------------LPDGRLLINELAPRVHNSGHYT----LDGCSTSQ---FEQHLRAILG 290 (352)
T ss_pred -------------eCCCcEEEEEecCCCCCcCcCc----hhhccccH---HHHHHHHHcC
Confidence 6788999999999998554321 13456653 3344444443
No 53
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.94 E-value=5.7e-25 Score=252.61 Aligned_cols=294 Identities=18% Similarity=0.131 Sum_probs=200.2
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+||.||+. |+.+++++++.||+|+.++.+++...... ++..+...... ...+..+++
T Consensus 1 kililG~g~~---------~~~l~~aa~~~G~~v~~~d~~~~~~~~~~----------ad~~~~~~~~d--~~~l~~~~~ 59 (380)
T TIGR01142 1 RVLLLGSGEL---------GKEVAIEAQRLGVEVIAVDRYANAPAMQV----------AHRSYVINMLD--GDALRAVIE 59 (380)
T ss_pred CEEEECCCHH---------HHHHHHHHHHcCCEEEEEeCCCCCchhhh----------CceEEEcCCCC--HHHHHHHHH
Confidence 6899998875 78888999999999998876554221110 01000000000 000111111
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHH-HHCCCCCCCeEEecCCccchhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEM-SKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l-~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..++|+|++....- ....-..|+.+|+|+ .+++.+..+|+||..+++++ +++|||+|++..+.+.+. +.
T Consensus 60 --~~~id~v~~~~e~v---~~~~~~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~----~~ 129 (380)
T TIGR01142 60 --REKPDYIVPEIEAI---ATDALFELEKEGYFV-VPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSLDE----LR 129 (380)
T ss_pred --HhCCCEEEeccCcc---CHHHHHHHHhcCCee-CCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCHHH----HH
Confidence 23799999976431 112224678899874 57899999999999999985 899999999998876432 33
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc--CCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE--GIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~--~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
.+.+ .++||+||||..+++|.||.+|++.+|+.+....+... ..++.+|||+||+|+.|+++.++.+.+|
T Consensus 130 ~~~~-----~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~~~E~sv~~~~~~~g--- 201 (380)
T TIGR01142 130 EAVE-----KIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVRHVDG--- 201 (380)
T ss_pred HHHH-----HcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCCCEEEEEEEEEcCCC---
Confidence 3322 36899999999999999999999999987666554321 2356899999999768999998864322
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
......+.+ .+....+|. ....|+.+++++.+++++.+.+++++||+.|++++||++
T Consensus 202 ~~~~~~~~~----------------~~~~~~~~~-----~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~-- 258 (380)
T TIGR01142 202 NTTFCAPIG----------------HRQIDGDYH-----ESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFV-- 258 (380)
T ss_pred CEEEecCcc----------------eEEeCCeeE-----EEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE--
Confidence 222222211 111222222 245789999999999999999999999999999999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+++ .+||+|||++||.+.+. .+. ..|+++.++ .++.++.
T Consensus 259 ---------------~~~-~~~viEinpR~~~~~~~---~~~-~~g~~~~~~---~~r~~~G 297 (380)
T TIGR01142 259 ---------------KGD-EVIFSEVSPRPHDTGMV---TLI-SQGLSEFAL---HVRAILG 297 (380)
T ss_pred ---------------ECC-cEEEEEeecCCCCCceE---Eee-ecCCCHHHH---HHHHHcC
Confidence 444 59999999999966432 121 238876544 4555554
No 54
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.94 E-value=5.6e-25 Score=246.17 Aligned_cols=355 Identities=17% Similarity=0.197 Sum_probs=254.3
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchhHHHh-hccCcCEEEEcCCCC
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSEFAEH-LAANVDIVFPTIHGR 174 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~D~vf~~lhG~ 174 (953)
|..|++++++.|+..+.+|-|.|.+..+..-+ |-.+.+.+ -.++......++.. .+-..|.|-|-. |.
T Consensus 14 AcRVIRtar~lGi~tVAVYSdaDa~A~hV~~A--------DEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHPGY-GF 84 (645)
T COG4770 14 ACRVIRTARDLGIRTVAVYSDADADALHVRMA--------DEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHPGY-GF 84 (645)
T ss_pred hHHHHHHHHHcCCceEEEEecCCCCchhhhhc--------chhhhcCCCchhhhhccHHHHHHHHHHhCcccccCCc-cc
Confidence 88999999999999999999888766543221 11111110 01111111122111 122455544433 34
Q ss_pred CCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEE
Q 002207 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254 (953)
Q Consensus 175 ~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvV 254 (953)
..||..+.+.++..|+-|+|+++.++....||..+|.++.++|+|+.|.+.=... +.+++..+. ++++|||+|
T Consensus 85 LSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~q--d~~~~~~~A-----~eiGyPVlI 157 (645)
T COG4770 85 LSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQ--DAAELVAIA-----EEIGYPVLI 157 (645)
T ss_pred cccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCccc--CHHHHHHHH-----HhcCCcEEE
Confidence 4499999999999999999999999999999999999999999999998643221 223343333 248899999
Q ss_pred eeCCCCCceeEEEeCCHHHHHHH---HHHhHhcC-CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEecc
Q 002207 255 KPTRAGSSIGVTVAYGVIDSLKK---AKGIILEG-IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ 330 (953)
Q Consensus 255 KP~~~gsS~GV~~v~~~~el~~~---a~~~~~~~-~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~ 330 (953)
|+..||+++|+.+|.+.+|+.+. +.+..... -|++++||+|+.-.|.+++.|++|.+|| .+.+ +|..
T Consensus 158 KAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGN---vv~L--gERd---- 228 (645)
T COG4770 158 KASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGN---VVHL--GERD---- 228 (645)
T ss_pred EeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCC---EEEe--eccc----
Confidence 99999999999999998765433 32221112 4689999999977799999999987776 2222 2221
Q ss_pred CccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccC
Q 002207 331 GSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409 (953)
Q Consensus 331 ~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~ 409 (953)
.+.+..++ ++....|++ ++++++++|-+.|.+++++.|+.|-+.|+|++
T Consensus 229 -----------CSlQRRhQ---KVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFiv---------------- 278 (645)
T COG4770 229 -----------CSLQRRHQ---KVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIV---------------- 278 (645)
T ss_pred -----------cchhhhcc---hhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEE----------------
Confidence 12222332 344557887 89999999999999999999999999999987
Q ss_pred cccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCCC--CcceecccccccCCCcccccc
Q 002207 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYN--SVSSHLPGRSSGSKPTEALNK 487 (953)
Q Consensus 410 ~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 487 (953)
+.++.+||+|+||+-..+. |..-.-+|+ ||+..+|+.|....-.+.+-. --+|+|+-||.+++|.+.|-|
T Consensus 279 -d~~~~f~FlEMNTRLQVEH----PVTE~iTGi---DLVewqiRVA~GekL~~~Q~di~l~GhAiE~RiyAEDp~r~FLP 350 (645)
T COG4770 279 -DADGNFYFLEMNTRLQVEH----PVTELITGI---DLVEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAEDPARGFLP 350 (645)
T ss_pred -cCCCcEEEEEeecceeccc----cchhhhhhh---HHHHHHHHHhcCCcCCcccccccccceeEEEEEeccCcccCccC
Confidence 6788899999999988764 333345677 789999999877632222111 126999999999999999999
Q ss_pred CCCceEEEEecCCCcccceeccccHHHH
Q 002207 488 REGIREVFVIFGGDTSERQVSLMSGTNV 515 (953)
Q Consensus 488 ~~~~~~v~vl~GG~s~E~~vS~~s~~~v 515 (953)
+++++..+....|....-|-.+..|..|
T Consensus 351 s~G~l~~~~~P~~~~vRvDsGV~~G~~I 378 (645)
T COG4770 351 STGRLTRYRPPAGPGVRVDSGVREGDEI 378 (645)
T ss_pred CCceeEeecCCCCCceecccCcccCCcc
Confidence 9999999988888655555555555443
No 55
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.94 E-value=6.7e-25 Score=279.19 Aligned_cols=301 Identities=14% Similarity=0.126 Sum_probs=217.6
Q ss_pred CcCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
.++||+||.+|+ +.|+|++ +-+++++|++.||+++.++.+++....... ..| .++.++..
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~---~v~~~~aLk~~G~~vI~vn~npetvs~~~~--------~aD-~~y~ep~~--- 618 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYS---SVHAAFALKKEGYETIMINNNPETVSTDYD--------TAD-RLYFEPLT--- 618 (1068)
T ss_pred CCceEEEecccccccccccccchh---HHHHHHHHHHcCCEEEEEeCCccccccccc--------cCc-eEEEccCC---
Confidence 457999998864 7899996 788899999999999987765542110000 001 01111111
Q ss_pred CcchhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCC
Q 002207 151 GSLSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229 (953)
Q Consensus 151 ~~~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~ 229 (953)
...+... ..+++|.|++.++|... ..+...|+.+|+|+.|+++.++..|.||..++++|+++|||+|++..+.+.
T Consensus 619 --~e~vl~I~~~e~~dgVI~~~g~~~~--~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~ 694 (1068)
T PRK12815 619 --LEDVLNVAEAENIKGVIVQFGGQTA--INLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDE 694 (1068)
T ss_pred --HHHHHHHHhhcCCCEEEEecCcHHH--HHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCH
Confidence 1111111 14589999998877642 346778899999999999999999999999999999999999999988764
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++ +.++.+ .++||+||||..+++|.|+.+|++.+|+.+...+.. ..+..+|||+||+| +|+++.++.+
T Consensus 695 ee----~~~~~~-----~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~--s~~~~vlIeefI~G-~E~~Vd~i~d 762 (1068)
T PRK12815 695 EE----AFAFAK-----RIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA--SQLYPILIDQFIDG-KEYEVDAISD 762 (1068)
T ss_pred HH----HHHHHH-----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh--cCCCCEEEEEeecC-ceEEEEEEEc
Confidence 42 222222 378999999999999999999999999877666542 35678999999997 9999999964
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEc-CCCCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~-Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
+. ...+....|.. .... ...+. +.... |..++++..++|++.+.+++++||++|+.+
T Consensus 763 g~----~v~i~~i~e~~----------------e~~g-v~sGd-s~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~n 820 (1068)
T PRK12815 763 GE----DVTIPGIIEHI----------------EQAG-VHSGD-SIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMN 820 (1068)
T ss_pred CC----ceEEeeEEEEe----------------eccC-CcCCC-eeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEE
Confidence 31 11111111110 0111 12222 23334 556999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
+||++ + +|++|++||||+++ ..+|.+.+++|+++.++..++
T Consensus 821 iqf~v-----------------~-~~~~yviEiNpR~s----~t~~~~skatGv~l~~~~~~~ 861 (1068)
T PRK12815 821 IQFVL-----------------A-NDEIYVLEVNPRAS----RTVPFVSKATGVPLAKLATKV 861 (1068)
T ss_pred EEEEE-----------------E-CCcEEEEEEeCCCC----ccHHHHHHHHCCCHHHHHHHH
Confidence 99986 3 46799999999998 345777889999987766443
No 56
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.93 E-value=1.3e-24 Score=251.59 Aligned_cols=245 Identities=14% Similarity=0.158 Sum_probs=183.7
Q ss_pred cCCcEEEEecCCCCCCccHHHHHH---HHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLL---EAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~ll---E~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++ ..|++.++++. +.+|||+.|++..++++++||..+|++ |+++|||||+|..+++.+
T Consensus 67 ~~iD~Vv~-----g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~---l~~~gIpt~~~~~~~~~~----- 133 (426)
T PRK13789 67 NPFDLIVV-----GPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSL---MKEAKIPTASYKTFTEYS----- 133 (426)
T ss_pred cCCCEEEE-----CCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHH---HHHcCCCCCCeEeeCCHH-----
Confidence 46899997 34888777554 559999999999999999999999999 999999999998876432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++.++... .+. ..+..+|||||
T Consensus 134 ---ea~~~~~~~-~~PvVVKp~~~~~gkGV~vv~~~eel~~---a~~~~~~~~---~~g----------~~~~~vlIEEf 193 (426)
T PRK13789 134 ---SSLSYLESE-MLPIVIKADGLAAGKGVTVATEKKMAKR---ALKEIFKDK---KFG----------QSGNQVVIEEF 193 (426)
T ss_pred ---HHHHHHHhc-CCCEEEEeCCCCCCCcEEEECCHHHHHH---HHHHHHhhc---ccc----------CCCCeEEEEEC
Confidence 233445678 6999999999999999999999988875 566554320 000 01357999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+++ .+...|..+ ....+|+++.+++.|.+..++|++. +
T Consensus 194 l~G~-------------------------E~Sv~~~~dg~-~~~~lp~~~--d~k~~~d~d~g~~tggmg~~~P~p~--~ 243 (426)
T PRK13789 194 MEGQ-------------------------EASIFAISDGD-SYFLLPAAQ--DHKRAFDGDQGPNTGGMGAYCPAPV--I 243 (426)
T ss_pred cCCe-------------------------EEEEEEEECCC-EEEEccceE--ecccccCCCCCCCCCCceEEeeCCC--C
Confidence 9997 99999998654 333344433 2346889999998777778888874 6
Q ss_pred CHHHHHHHHH-HHHHHH---HHcC--CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 870 STEALDKCKQ-RIELIA---NALQ--LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 870 ~~~~~~~i~~-~a~~~~---~aLg--~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++++.+++++ ++++++ +++| +.|+.++|||++. +|++||||+|++||.+....+.++. -.+|++.
T Consensus 244 ~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g~~~vlE~n~R~Gdpe~~~ll~~l--------~~dl~~~ 314 (426)
T PRK13789 244 TEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EGEPKVVEFNCRFGDPETQCVLAML--------DGDLLEL 314 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CCCEEEEEEecCCCCcHhhhhhccC--------CCCHHHH
Confidence 8888888865 445555 4445 6899999999985 6889999999999987665433322 1366665
Q ss_pred HHHHHh
Q 002207 944 VLDLGS 949 (953)
Q Consensus 944 li~~a~ 949 (953)
++..+.
T Consensus 315 ~~~~~~ 320 (426)
T PRK13789 315 LYAAST 320 (426)
T ss_pred HHHHHc
Confidence 555544
No 57
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.93 E-value=2.2e-24 Score=251.17 Aligned_cols=303 Identities=18% Similarity=0.197 Sum_probs=196.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC--CceeeecccccccCCCCCccccccccccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN--LNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
|||+||.||.. +..+++++++.|+.+.++ ++++ +.... ...........|.+ .+.+
T Consensus 1 ~kiliiG~G~~---------~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~d~~-----------~l~~ 58 (423)
T TIGR00877 1 MKVLVIGNGGR---------EHALAWKLAQSPLVKYVY-VAPGNAGTARL-AKNKNVAISITDIE-----------ALVE 58 (423)
T ss_pred CEEEEECCChH---------HHHHHHHHHhCCCccEEE-EECCCHHHhhh-cccccccCCCCCHH-----------HHHH
Confidence 69999999987 566778888888766544 3332 11000 00000000001100 0112
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
+.+ +.++|+||+..+... -..+...|+.+|+|++|+++.++.+++||+.+|++|+++|||+|++..+.+.+.
T Consensus 59 ~~~--~~~id~vi~~~e~~l--~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~---- 130 (423)
T TIGR00877 59 FAK--KKKIDLAVIGPEAPL--VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEE---- 130 (423)
T ss_pred HHH--HhCCCEEEECCchHH--HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHH----
Confidence 222 347999998654211 134678999999999999999999999999999999999999999998876432
Q ss_pred hhhhhhhcCCCCCCCc-EEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC---CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 236 LSNWFVTNKLDPNSGK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG---IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~P-vvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~---~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.++++ .++|| +||||..+++|.||.++++.+|+.+.+.+++... .+..+|||+||+| +|+++.++.++
T Consensus 131 ~~~~~~-----~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~dg- 203 (423)
T TIGR00877 131 ALSYIQ-----EKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDG-EEVSLLAFVDG- 203 (423)
T ss_pred HHHHHH-----hcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccC-ceEEEEEEEcC-
Confidence 333332 36789 9999999999999999999999877766654321 2357999999998 99999999642
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHH-HHH---HHHHHHHhC--CC
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSI-REG---ASLLFQRLG--LC 384 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i-~~~---a~~~~~aLg--~~ 384 (953)
. ....++..+. ...++++..+...++ .....|++ ++++..+++ .++ +.+++.++| ++
T Consensus 204 -~--~~~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~ 267 (423)
T TIGR00877 204 -K--TVIPMPPAQD------------HKRALEGDKGPNTGG-MGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYK 267 (423)
T ss_pred -C--eEEeceeeee------------eeecccCCCCCCCCC-CceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 1 2222233221 123455544443332 33456663 777655443 334 445555555 67
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcc-hHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS-FLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S-~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
|..++||++ +++| +||+|||+++|-+.+. ++| ..+.+ +.+.++..+...
T Consensus 268 G~~~ie~~~-----------------t~~g-~~viEin~R~g~~~~~~~~~----~~~~d---l~~~~~~~~~g~ 317 (423)
T TIGR00877 268 GVLYAGLML-----------------TKEG-PKVLEFNCRFGDPETQAVLP----LLKSD---LLEVCLAAVEGK 317 (423)
T ss_pred eEEEEEEEE-----------------ECCC-cEEEEEEccCCCccceeEec----ccCCC---HHHHHHHHHcCC
Confidence 999999986 5677 9999999999966543 233 23454 444455555543
No 58
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.93 E-value=9.6e-24 Score=251.79 Aligned_cols=211 Identities=18% Similarity=0.126 Sum_probs=163.8
Q ss_pred CcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHH
Q 002207 635 QATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 714 (953)
Q Consensus 635 ~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~ 714 (953)
.|++....+...- ..+ ..|+..|+| +++++.+..+|+||..+|++ |+++|||||+|..+.+.+ .+
T Consensus 84 ~dvIt~e~e~v~~--~~l-~~le~~gi~-v~ps~~al~i~~DK~~~K~~---l~~~GIptp~~~~v~~~~--------el 148 (577)
T PLN02948 84 CDVLTVEIEHVDV--DTL-EALEKQGVD-VQPKSSTIRIIQDKYAQKVH---FSKHGIPLPEFMEIDDLE--------SA 148 (577)
T ss_pred CCEEEEecCCCCH--HHH-HHHHhcCCc-cCCCHHHHHHhcCHHHHHHH---HHHCCcCCCCeEEeCCHH--------HH
Confidence 6887766554432 234 788999998 58999999999999999999 899999999999886532 24
Q ss_pred HHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 715 HELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 715 ~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
.++.+++ +||+||||.++| +|.|+++|++.+||.. +++.++.+ +..+|||+||++.
T Consensus 149 ~~~~~~i-g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~---a~~~~~~~-------------------~~~vlvEefI~~~ 205 (577)
T PLN02948 149 EKAGDLF-GYPLMLKSRRLAYDGRGNAVAKTEEDLSS---AVAALGGF-------------------ERGLYAEKWAPFV 205 (577)
T ss_pred HHHHHhc-CCcEEEEeCCCCCCCCCeEEECCHHHHHH---HHHHhhCC-------------------CCcEEEEecCCCC
Confidence 4556778 699999999988 5999999999999875 55555433 5679999999985
Q ss_pred ccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHH
Q 002207 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873 (953)
Q Consensus 794 ~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~ 873 (953)
+|++|.++++.+..+...|..+......+++ ..+.|+. +++++
T Consensus 206 ------------------------~EisV~v~r~~~G~i~~~p~~E~~~~~~~~~----------~~~~Pa~---l~~~~ 248 (577)
T PLN02948 206 ------------------------KELAVMVARSRDGSTRCYPVVETIHKDNICH----------VVEAPAN---VPWKV 248 (577)
T ss_pred ------------------------eEEEEEEEECCCCCEEEecCcccEEECCeeE----------EEEECCC---CCHHH
Confidence 4999999976433222334433222222221 2246776 68999
Q ss_pred HHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 874 ~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
.++++++|++++++|++.|++|||||++. +|++||+||||+||.+.+
T Consensus 249 ~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG~v~v~EInpRpg~sGh 295 (577)
T PLN02948 249 AKLATDVAEKAVGSLEGAGVFGVELFLLK-DGQILLNEVAPRPHNSGH 295 (577)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CCcEEEEEEeCCCCCCCc
Confidence 99999999999999999999999999985 689999999999997664
No 59
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=99.93 E-value=2.4e-24 Score=236.86 Aligned_cols=355 Identities=17% Similarity=0.192 Sum_probs=247.7
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchhHHHh-hccCcCEEEEcCCCC
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSEFAEH-LAANVDIVFPTIHGR 174 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~D~vf~~lhG~ 174 (953)
|..|++.+++.|+..+.+|-|.|-+..+...+ |-...+.+ -.+....+..+.+. .....-.|-|.. |.
T Consensus 10 AcRVirTakkmGI~tVAV~Sd~D~~SlHVk~A--------Deav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGY-GF 80 (670)
T KOG0238|consen 10 ACRVIRTAKKMGIRTVAVYSDADRNSLHVKMA--------DEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGY-GF 80 (670)
T ss_pred eehhhhHHHHhCCeEEEEEccCccccceeecc--------cceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCc-cc
Confidence 67889999999999999997777554443222 11111110 11112222222221 112344444433 44
Q ss_pred CCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEE
Q 002207 175 FGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVV 254 (953)
Q Consensus 175 ~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvV 254 (953)
..|+..+.++|+..||-|+|+++.+++-..||...|++++++|+|+.|.+--.... .+++.+.. .+++||++|
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs--~e~~~~~a-----~eIgyPvMi 153 (670)
T KOG0238|consen 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQS--DEEAKKVA-----REIGYPVMI 153 (670)
T ss_pred cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCccccccc--HHHHHHHH-----HhcCCcEEE
Confidence 45899999999999999999999999999999999999999999999876432211 12233332 248899999
Q ss_pred eeCCCCCceeEEEeCCHHHHHHHHHHh---HhcC-CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEecc
Q 002207 255 KPTRAGSSIGVTVAYGVIDSLKKAKGI---ILEG-IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ 330 (953)
Q Consensus 255 KP~~~gsS~GV~~v~~~~el~~~a~~~---~~~~-~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~ 330 (953)
|+..||+++|+.++.+.+|+.+..... .... .|+.+|+|+||+..|.+++.|++|..||. + ...|..
T Consensus 154 Ka~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGna---v--~l~ERd---- 224 (670)
T KOG0238|consen 154 KATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNA---V--HLGERD---- 224 (670)
T ss_pred EeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcE---E--Eecccc----
Confidence 999999999999999988755433221 1111 46789999999888999999999877762 2 222221
Q ss_pred CccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccC
Q 002207 331 GSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 409 (953)
Q Consensus 331 ~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~ 409 (953)
..+.....| .....|++ ++++.+..+.+.|.++++++|+.|.+.|+|++
T Consensus 225 --------CSvQRRnQK------iiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~---------------- 274 (670)
T KOG0238|consen 225 --------CSVQRRNQK------IIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIV---------------- 274 (670)
T ss_pred --------cchhhhhhh------hhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEE----------------
Confidence 011112222 33446776 99999999999999999999999999999987
Q ss_pred cccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCCCC--CcceecccccccCCCcccccc
Q 002207 410 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYN--SVSSHLPGRSSGSKPTEALNK 487 (953)
Q Consensus 410 ~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 487 (953)
|+.+++||+|+||+-..+. |..-.-+|. ||++.+|+.|......+.+-. --++++++|+.+++|...|.|
T Consensus 275 -D~~~~FyFmEmNTRLQVEH----PvTEmItg~---DLVewqiRvA~ge~lp~~q~ei~l~GhafE~RiyAEdp~~~f~P 346 (670)
T KOG0238|consen 275 -DSKDNFYFMEMNTRLQVEH----PVTEMITGT---DLVEWQIRVAAGEPLPLKQEEIPLNGHAFEARIYAEDPYKGFLP 346 (670)
T ss_pred -cCCCcEEEEEeeceeeecc----cchhhccch---HHHHHHHHHhcCCCCCCCcceeeecceEEEEEEeecCCcccCCC
Confidence 5678899999999888764 333233465 799999999877633232111 136999999999999999999
Q ss_pred CCCceEEEEecC-CCcccceeccccHHHH
Q 002207 488 REGIREVFVIFG-GDTSERQVSLMSGTNV 515 (953)
Q Consensus 488 ~~~~~~v~vl~G-G~s~E~~vS~~s~~~v 515 (953)
+.+++.-....+ +.+..-|--+.+|.+|
T Consensus 347 ~~G~L~~~~~p~~~~~vRvdtgV~~g~~v 375 (670)
T KOG0238|consen 347 SAGRLVYYSFPGHSPGVRVDTGVRSGDEV 375 (670)
T ss_pred CCccceeeccCCCCCCeeeecCcccCCcc
Confidence 999988766555 4555555555566554
No 60
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.93 E-value=3.4e-24 Score=249.31 Aligned_cols=244 Identities=16% Similarity=0.137 Sum_probs=171.2
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++|+|++... ...-..+...|+.+|+|++|+++.++.+|+||..+|++|+++|||+|++..+.+.+. +.++.+
T Consensus 61 ~~id~vi~~~e--~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~~~~ 134 (420)
T PRK00885 61 EGIDLTVVGPE--APLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAEE----ALAYLD 134 (420)
T ss_pred hCCCEEEECCc--hHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHH----HHHHHH
Confidence 47999997432 111124567888899999999999999999999999999999999999998866432 223322
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
.++||+||||..+++|.||.+|++.+|+.+....++.. .....+||||||+| +|+++.++.++ . ..
T Consensus 135 -----~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g--~--~~ 204 (420)
T PRK00885 135 -----EKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAFVDG--E--NV 204 (420)
T ss_pred -----HcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEEECC--C--ce
Confidence 36789999999999999999999999987776665431 12468999999998 99999999632 1 22
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHH-HHHHHHHH---hC--CCCeeEee
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIRE-GASLLFQR---LG--LCDFARID 390 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~-~a~~~~~a---Lg--~~G~arVD 390 (953)
..++..+- ...+++...+...++ +....|++ ++++..+++++ ++.++.++ +| ++|+.++|
T Consensus 205 ~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve 271 (420)
T PRK00885 205 LPLPTAQD------------HKRAGDGDTGPNTGG-MGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAG 271 (420)
T ss_pred EeceeeEe------------eeecccCCCCCCCCC-CceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEE
Confidence 22222211 123444444433333 44567876 88887777764 65555554 44 46999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCc-chHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT-SFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~-S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
|++ +++| +||+|||+++|.+.+ .++|. .+. ++++.++..+....
T Consensus 272 ~~~-----------------t~~g-~~viEin~R~g~~~~~~~~~~----~~~---d~~~~~~~~~~g~~ 316 (420)
T PRK00885 272 LMI-----------------TKDG-PKVIEFNARFGDPETQVVLPR----LKS---DLVELLLAAADGKL 316 (420)
T ss_pred EEE-----------------ECCC-cEEEEEecccCCccHHhhhhh----ccC---CHHHHHHHHHcCCC
Confidence 986 5566 899999999997643 33332 344 45556666666543
No 61
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.93 E-value=3.8e-24 Score=247.81 Aligned_cols=242 Identities=14% Similarity=0.122 Sum_probs=179.2
Q ss_pred cCcCEEEEcCCCCCCCc---hHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGED---GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEd---g~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++.. |+ ..+...|+.+|+||+|++..++++++||..+|++|+++|||||++..+.+.+ ++.+
T Consensus 61 ~~id~vvvg~-----E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~----e~~~ 131 (434)
T PLN02257 61 WGVGLVVVGP-----EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPA----AAKK 131 (434)
T ss_pred cCCCEEEECC-----chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHH----HHHH
Confidence 4799999664 33 2456777889999999999999999999999999999999999998886543 2333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++ .++||+||||..+++|+||.++++.+|+.+++.+++.. ..+..+|||+||+| +|+++.++.++ .
T Consensus 132 ~~~-----~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G-~E~Sv~~~~dG--~- 202 (434)
T PLN02257 132 YIK-----EQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG-EEASFFALVDG--E- 202 (434)
T ss_pred HHH-----HcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CEEEEEEEECC--C-
Confidence 332 36789999999999999999999999987766654321 13468999999998 99999888532 1
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HH---HHHHHHHhCCC--Cee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EG---ASLLFQRLGLC--DFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~---a~~~~~aLg~~--G~a 387 (953)
.+++..++. +...+|||+.+|..++ +...+|++ +++++.+++. ++ +.+++++.||. |+.
T Consensus 203 ---~~~pl~~~~----------dhkr~~d~d~g~ntgg-mg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl 268 (434)
T PLN02257 203 ---NAIPLESAQ----------DHKRVGDGDTGPNTGG-MGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVL 268 (434)
T ss_pred ---cEEEEEeee----------ecccccCCCCCCCCCC-CeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 122332222 1457999999997765 44445664 8888888754 43 44566787875 778
Q ss_pred EeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCc-chHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQT-SFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~-S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
++||++ + ++|.+||||+|++||++.+ ..+|. .+.+ |++.++..+..+.
T Consensus 269 ~ve~ml-----------------~~~~g~p~vLE~N~R~Gdpe~~~~l~~----l~~D---l~~~~~~~~~g~l 318 (434)
T PLN02257 269 YAGLMI-----------------EKKSGLPKLLEYNVRFGDPECQVLMMR----LESD---LAQVLLAACKGEL 318 (434)
T ss_pred EEEEEE-----------------EcCCCCEEEEEEECCCCCCchheEehh----hcCC---HHHHHHHHHcCCC
Confidence 999886 5 5778999999999999764 34443 4664 5555565555543
No 62
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.93 E-value=4.7e-24 Score=246.98 Aligned_cols=246 Identities=15% Similarity=0.132 Sum_probs=177.9
Q ss_pred cCCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|.|++.. |+. .+...|+..|+||+||+..++++++||..+|++ |+++|||||+|..+.+.+
T Consensus 61 ~~id~vvvg~-----E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~---l~~~GIptp~~~~~~~~~----- 127 (434)
T PLN02257 61 WGVGLVVVGP-----EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDL---CDKYKIPTAKYETFTDPA----- 127 (434)
T ss_pred cCCCEEEECC-----chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHH---HHHcCCCCCCeEEeCCHH-----
Confidence 4678877542 442 344556778999999999999999999999999 999999999998876432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|+||.++++.+|+.+ +++.++.. +.+. .....+|||+|
T Consensus 128 ---e~~~~~~~~-g~PvVVKp~~~~~GkGV~iv~~~~el~~---a~~~~~~~---~~fg----------~~~~~vlIEef 187 (434)
T PLN02257 128 ---AAKKYIKEQ-GAPIVVKADGLAAGKGVVVAMTLEEAYE---AVDSMLVK---GAFG----------SAGSEVVVEEF 187 (434)
T ss_pred ---HHHHHHHHc-CCCEEEEcCCCCCCCCEEEECCHHHHHH---HHHHHHhh---hhcc----------CCCCeEEEEEC
Confidence 234455678 6999999999999999999999998875 45444311 0000 01468999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.++.. +.|...+.....+||++.+|+.+....+.|++. +
T Consensus 188 i~G~-------------------------E~Sv~~~~dG~~---~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~--l 237 (434)
T PLN02257 188 LDGE-------------------------EASFFALVDGEN---AIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPV--L 237 (434)
T ss_pred CCCC-------------------------EEEEEEEECCCc---EEEEEeeeecccccCCCCCCCCCCCeeEecCCC--C
Confidence 9997 999988876432 233344444567999999998776677778764 6
Q ss_pred CHHHHHHHHH-H---HHHHHHHcCCc--ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 870 STEALDKCKQ-R---IELIANALQLE--GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 870 ~~~~~~~i~~-~---a~~~~~aLg~~--G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++++.+++.+ . +.+++++.+|. |+.++||+++.++|++||||+|++||++....+-.. +-.||++.
T Consensus 238 ~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~--------l~~Dl~~~ 309 (434)
T PLN02257 238 TPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMR--------LESDLAQV 309 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehh--------hcCCHHHH
Confidence 7888777543 3 34556677776 788999999833578999999999999744321111 11366666
Q ss_pred HHHHHh
Q 002207 944 VLDLGS 949 (953)
Q Consensus 944 li~~a~ 949 (953)
++..+.
T Consensus 310 ~~~~~~ 315 (434)
T PLN02257 310 LLAACK 315 (434)
T ss_pred HHHHHc
Confidence 666554
No 63
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.92 E-value=4e-23 Score=238.52 Aligned_cols=299 Identities=18% Similarity=0.104 Sum_probs=198.0
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
++++|||+||.||. .++.++.++++.||+|+.++.+++...... .+..+...... ...+
T Consensus 9 ~~~~~~ilIiG~g~---------~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~----------ad~~~~~~~~d--~~~l 67 (395)
T PRK09288 9 SPSATRVMLLGSGE---------LGKEVAIEAQRLGVEVIAVDRYANAPAMQV----------AHRSHVIDMLD--GDAL 67 (395)
T ss_pred CCCCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEeCCCCCchHHh----------hhheEECCCCC--HHHH
Confidence 34567999998884 377788899999999998876554211110 00000000000 0001
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHH-HCCCCCCCeEEecCCccc
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMS-KQGFITVPSFLLQGSEVN 232 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~-~~Giptp~~~~~~~~~~~ 232 (953)
.++.+ ..++|+|++..+... -..+. .++..|+|. .++..+..+++||..+|++|. ++|||+|++..+.+.+.
T Consensus 68 ~~~~~--~~~id~vi~~~e~~~--~~~~~-~l~~~g~~~-~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~- 140 (395)
T PRK09288 68 RAVIE--REKPDYIVPEIEAIA--TDALV-ELEKEGFNV-VPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEE- 140 (395)
T ss_pred HHHHH--HhCCCEEEEeeCcCC--HHHHH-HHHhcCCee-CCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCHHH-
Confidence 11111 247999999765311 11233 456679885 477899999999999999994 79999999999876442
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC--CCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~--~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
+.++.. .++||+||||..+++|.||.+|++.+|+.+....++... .+..+||||||+++.|+++.++.++
T Consensus 141 ---l~~~~~-----~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~~~E~sv~~~~~~ 212 (395)
T PRK09288 141 ---LRAAVE-----EIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDFDYEITLLTVRAV 212 (395)
T ss_pred ---HHHHHH-----hcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCCCEEEEEEEEEcC
Confidence 333322 368999999999999999999999999876665543211 1367999999995599999998643
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
++ ......+.+.. ... +.......|+.+++++.+++++++.+++++||+.|+.++|
T Consensus 213 ~~---~~~~~~~~~~~----------------~~~-----~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve 268 (395)
T PRK09288 213 DG---GTHFCAPIGHR----------------QED-----GDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVE 268 (395)
T ss_pred CC---CEEEecCcccE----------------EEC-----CEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEE
Confidence 21 22222221100 000 1101234688899999999999999999999999999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
|++ +++ .+||+|||++||-+.... +. ..|+++. ...++.++.
T Consensus 269 ~~~-----------------~~~-~~~viEinpR~~~~~~~~---~~-~~g~~~~---~~~~~~~lG 310 (395)
T PRK09288 269 LFV-----------------KGD-EVYFSEVSPRPHDTGMVT---LI-SQNLSEF---ELHARAILG 310 (395)
T ss_pred EEE-----------------eCC-eEEEEEecCCCCCCccee---ee-ecccCHH---HHHHHHHcC
Confidence 986 455 599999999998654221 11 2277653 344455454
No 64
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.92 E-value=3.6e-23 Score=227.64 Aligned_cols=261 Identities=13% Similarity=0.132 Sum_probs=180.7
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHHhhccCcCEEEEcCCCCCCC
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGE 177 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GE 177 (953)
.+.+.++|++.|+++..++++.....+ . +... . ...+|++|+...+ .+.
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~~~~~--~----------~~~~-----------------~-~~~~d~v~~r~~~-~~~ 60 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPALPLPF--G----------ERPK-----------------E-LEDVDVAIIRCVS-QSR 60 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhheEEEc--C----------CCcc-----------------c-cCCCCEEEEcCcc-hhh
Confidence 577899999999999988765321000 0 0000 0 1268999997421 233
Q ss_pred chHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeC
Q 002207 178 DGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT 257 (953)
Q Consensus 178 dg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~ 257 (953)
...++.+|+.+|+|+++ ++.++..+.||..++++|+++|||+|++..+.+.+ ++..+.. ..+||+||||.
T Consensus 61 ~~~~~~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~----~~~~~~~-----~~~~P~vvKP~ 130 (280)
T TIGR02144 61 ALYSARLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDRE----AALKLAE-----ALGYPVVLKPV 130 (280)
T ss_pred HHHHHHHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeCCHH----HHHHHHH-----HcCCCEEEEEC
Confidence 45678999999999987 47999999999999999999999999998875432 2222222 36789999999
Q ss_pred CCCCceeEEEeCCHHHHHHHHHH--hHhcCCCCcEEEeccCCC-CeEEEEEEEEeCCCCccccEEecceEEEEeccCccc
Q 002207 258 RAGSSIGVTVAYGVIDSLKKAKG--IILEGIDDRVVVELFLEG-GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD 334 (953)
Q Consensus 258 ~~gsS~GV~~v~~~~el~~~a~~--~~~~~~~~~vlVEefI~G-g~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~ 334 (953)
.+++|.||.++++.+++.+.... .+....+..+|||+||+| ++|+++.+++ + .... .+. ..
T Consensus 131 ~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig----~--~~~~----~~~-r~----- 194 (280)
T TIGR02144 131 IGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIG----D--EAIA----AIY-RY----- 194 (280)
T ss_pred cCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEEC----C--EEEE----EEE-Ec-----
Confidence 99999999999999987654322 121123467999999974 4899999984 2 1111 010 00
Q ss_pred cccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCC
Q 002207 335 VREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 414 (953)
Q Consensus 335 ~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG 414 (953)
. -+|......++ ...|..++++ +++.|.++++++|+ ++++|||++ +++|
T Consensus 195 ---~---~~~~~~~~~g~---~~~~~~~~~~----~~~~a~~~~~~lg~-~~~~vD~~~-----------------~~~g 243 (280)
T TIGR02144 195 ---S---NHWRTNTARGG---KAEPCPLDEE----VEELAVKAAEAVGG-GVVAIDIFE-----------------SKER 243 (280)
T ss_pred ---C---CchhhhhhcCC---ceeccCCCHH----HHHHHHHHHHHhCC-CeEEEEEEE-----------------cCCC
Confidence 0 11222222222 2356666665 57899999999997 699999876 5677
Q ss_pred cEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 415 ~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
++||+|||++||++.. ..++|+++.+++-..+
T Consensus 244 ~~~v~EvN~~p~~~~~------~~~~g~~~~~~~~~~~ 275 (280)
T TIGR02144 244 GLLVNEVNHVPEFKNS------VRVTGVNVAGEILEYA 275 (280)
T ss_pred CEEEEEEeCCcchhhh------hHhhCCCHHHHHHHHH
Confidence 8999999999998752 3578999877765544
No 65
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=99.92 E-value=2e-25 Score=212.20 Aligned_cols=117 Identities=33% Similarity=0.526 Sum_probs=83.7
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
|||+|||||.|+|||||+.||++|+++|++.+|+|++++|+++|.|+..+........................ .....
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISA-SLIEK 79 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEE-EETTE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhccccccccccc-ccccc
Confidence 69999999999999999999999999999999999999999999998754322111111111110000000000 00000
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECC
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs 195 (953)
......+|+|||++||.+||||+||++||.+||||+||
T Consensus 80 ~~~~~~~DvvFp~lHG~~GEDG~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 80 NEQKLEVDVVFPVLHGPNGEDGTIQGLLELLGIPYVGC 117 (117)
T ss_dssp STTCTTCSEEEEECCSTTTSSSHHHHHHHHTT-EBSSS
T ss_pred ccccccCCEEEEeccCCCCcccHHHHHHHHcCCCCcCC
Confidence 00134799999999999999999999999999999997
No 66
>PRK05586 biotin carboxylase; Validated
Probab=99.92 E-value=3.2e-23 Score=242.75 Aligned_cols=222 Identities=18% Similarity=0.248 Sum_probs=168.7
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--EeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--RRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v~~~~~~~~~ 709 (953)
++.+|+|+|.. |..+|++.++.+++.+|+||+|+++.++.+|+||..+|++ |+++|||||++.. +.+.
T Consensus 72 ~~~~d~i~p~~-~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~---l~~~GIpvp~~~~~~~~~~------ 141 (447)
T PRK05586 72 LTGAQAIHPGF-GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREI---MIKAGVPVVPGSEGEIENE------ 141 (447)
T ss_pred HcCCCEEEcCc-cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHH---HHHCCCCCCCCcccccCCH------
Confidence 36789999985 8999999999999999999999999999999999999999 9999999999842 3321
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++.+++ +||+||||..+|+|.||.+|++.+||.. +++.+..... .. ..++.++||+|
T Consensus 142 --~e~~~~~~~i-gyPvvvKP~~gggg~Gv~~v~~~~el~~---a~~~~~~~~~-----~~--------~~~~~vivEe~ 202 (447)
T PRK05586 142 --EEALEIAKEI-GYPVMVKASAGGGGRGIRIVRSEEELIK---AFNTAKSEAK-----AA--------FGDDSMYIEKF 202 (447)
T ss_pred --HHHHHHHHHc-CCCEEEEECCCCCCCeeEEECCHHHHHH---HHHHHHHHHH-----Hh--------cCCCeEEEEec
Confidence 1233455678 6999999999999999999999999886 4443332100 00 01367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|+++.++++. |....+ +.. + ..+...+ .......|++.
T Consensus 203 i~g~------------------------~ei~v~v~~d~~G~~~~~-~~~------~-~~~~~~~--~~~~~~~p~~~-- 246 (447)
T PRK05586 203 IENP------------------------KHIEFQILGDNYGNVVHL-GER------D-CSLQRRN--QKVLEEAPSPV-- 246 (447)
T ss_pred CCCC------------------------eEEEEEEEECCCCCEEEE-ece------e-cceEecc--cceEEEcCCCC--
Confidence 9985 49999999864 333222 110 0 0011001 11233446542
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|.++|||+++. +|++||+||||+||.+
T Consensus 247 l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g~~~~iEvNpR~~~~ 296 (447)
T PRK05586 247 MTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGNFYFMEMNTRIQVE 296 (447)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CCCEEEEEEECCCCCC
Confidence 7899999999999999999999999999999985 6899999999999766
No 67
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.91 E-value=4.5e-23 Score=241.75 Aligned_cols=228 Identities=16% Similarity=0.234 Sum_probs=170.1
Q ss_pred HHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeC
Q 002207 626 EWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRK 702 (953)
Q Consensus 626 ~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~ 702 (953)
.+++. .++.+|+|+|.. |..+|++.++..+|.+|+|++|+++.++.+|+||..++++ |+++|||+|++. .+.+
T Consensus 65 ~l~~~a~~~~id~I~pg~-g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~---l~~~gip~pp~~~~~~~~ 140 (449)
T TIGR00514 65 NIISAAEITGADAIHPGY-GFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIET---MKKAGVPCVPGSDGLVED 140 (449)
T ss_pred HHHHHHHHhCCCEEEeCC-CccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcccCcCC
Confidence 44544 346799999974 7889999999999999999999999999999999999999 999999999975 2322
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
. +.+.++.+++ +||+||||..+++|.||.+|++.+||..+ ++.+..... . ....+
T Consensus 141 ~--------~e~~~~~~~i-g~PvvvKP~~g~gs~Gv~~v~~~~el~~~---~~~~~~~~~-----~--------~~~~~ 195 (449)
T TIGR00514 141 E--------EENVRIAKRI-GYPVIIKATAGGGGRGMRVVREPDELVKS---ISMTRAEAK-----A--------AFGND 195 (449)
T ss_pred H--------HHHHHHHHHh-CCCEEEEeCCCCCCCccEEECCHHHHHHH---HHHHHHHHH-----H--------hCCCC
Confidence 1 1234455678 69999999999999999999999999864 443322100 0 00146
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeE
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~ 861 (953)
.+|||+||+|. +|+++.++++. |....+ .. .+ ..+..++ ......
T Consensus 196 ~vlvEe~i~g~------------------------~e~~v~v~~d~~g~~~~~-~~------~~-~~~~~~~--~~~~~~ 241 (449)
T TIGR00514 196 GVYIEKYIENP------------------------RHVEIQVLADKYGNAIYL-GE------RD-CSIQRRH--QKLLEE 241 (449)
T ss_pred CEEEEECCCCC------------------------eEEEEEEEEcCCCCEEEE-ec------cc-cCceecc--cceEEE
Confidence 79999999985 49999999864 333221 10 00 0111111 111223
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 862 ~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.|++ .+++++.+++++.+.+++++||+.|++++||+++. +|++||+||||+++.+
T Consensus 242 ~p~~--~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g~~~viEiNpR~~~~ 296 (449)
T TIGR00514 242 APSP--ALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NGEFYFMEMNTRIQVE 296 (449)
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CCCEEEEEEECCCCCC
Confidence 4554 37899999999999999999999999999999985 6889999999999765
No 68
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.91 E-value=2.3e-23 Score=238.36 Aligned_cols=245 Identities=18% Similarity=0.127 Sum_probs=178.3
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++|+|++...... -..+...|+..|+|++|+++.++++++||..+|++|+++|||||++..+.+.+. +.++.+
T Consensus 26 ~~id~vi~g~E~~l--~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~e----a~~~~~ 99 (379)
T PRK13790 26 QNVDWVVIGPEQPL--IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKD----ALTYIE 99 (379)
T ss_pred hCCCEEEECCcHHH--HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCHHH----HHHHHH
Confidence 47999997664211 124567889999999999999999999999999999999999999988765432 223322
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEec
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~ 321 (953)
.++||+||||..+++|.||.+|+|.+|+.+....++....+..+|||+||+| +|+++.++.++ . ..+.+.
T Consensus 100 -----~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g--~--~~~~~~ 169 (379)
T PRK13790 100 -----NCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEG-EEFSLMTFVNG--D--LAVPFD 169 (379)
T ss_pred -----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccC-ceEEEEEEeeC--C--EEEecc
Confidence 3678999999999999999999999998877776653334568999999998 99999999642 1 111111
Q ss_pred ceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHH-HHHHHHHHHHhCC-----CCeeEeeeeec
Q 002207 322 PTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSI-REGASLLFQRLGL-----CDFARIDGWFL 394 (953)
Q Consensus 322 ~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i-~~~a~~~~~aLg~-----~G~arVDf~~~ 394 (953)
+ +. ++...+|+++.++..++ +...+|+ .+++++.+++ ++++.+++++|++ .|+.++||++
T Consensus 170 ~--~~---------~~~kr~~~~d~g~~tgg-~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~l- 236 (379)
T PRK13790 170 C--IA---------QDHKRAFDHDEGPNTGG-MGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAIL- 236 (379)
T ss_pred c--cc---------ccccccccCCCCCcCCC-CceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE-
Confidence 1 11 01345888888887655 5556776 4788876666 7888888888844 4677889876
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++| +||+|+|++||-..+.. +....|.+ +++.++..+...
T Consensus 237 ----------------t~~g-~~viEiN~R~G~pe~~~---~~~~~~~D---l~~~~~~~~~g~ 277 (379)
T PRK13790 237 ----------------TKDG-PKVIEFNARFGDPEAQV---LLSRMESD---LMQHIIDLDEGK 277 (379)
T ss_pred ----------------eCCC-eEEEEEEcccCCCccee---eecccCCC---HHHHHHHHHcCC
Confidence 5666 99999999998643322 11235664 555666666654
No 69
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.91 E-value=5.9e-23 Score=225.20 Aligned_cols=271 Identities=17% Similarity=0.129 Sum_probs=186.0
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+|++.- .+. |.+.+.++|++.|+++..+.++... +... + ..
T Consensus 1 ~~~~~~~~------~~~-~~~~l~~a~~~~g~~~~~~~~~~~~--~~~~----------~-------~~----------- 43 (277)
T TIGR00768 1 KLAILYDR------IRL-DEKMLKEAAEELGIDYKVVTPPAIP--LTFN----------E-------GP----------- 43 (277)
T ss_pred CEEEEEcC------CCH-HHHHHHHHHHHcCCceEEEEhHHcE--Eecc----------C-------CC-----------
Confidence 58888854 223 6889999999999999877643210 0000 0 00
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.....+|+||+.. ........+...|+..|+|++++ +.++.+++||..++++|+++|+|+|++..+.+.+ ++.+
T Consensus 44 ~~~~~~d~v~~r~-~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~----~~~~ 117 (277)
T TIGR00768 44 RELAELDVVIVRI-VSMFRGLAVARYLESLGVPVINS-SDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPE----EALK 117 (277)
T ss_pred ccCCCCCEEEEec-hhHhhHHHHHHHHHHCCCeeeCC-HHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHH----HHHH
Confidence 0012689999998 22223446888999999999875 7999999999999999999999999998886543 2333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc-CCCCcEEEeccCCCC--eEEEEEEEEeCCCCcc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGG--SEFTAIVLDVGSGFDC 315 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~-~~~~~vlVEefI~Gg--~E~tv~Vl~~~~g~~~ 315 (953)
++. ..+||+||||..+++|.||.++++.+++.......... .....+|||+||+|. +++++.+++ +
T Consensus 118 ~~~-----~~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~----~-- 186 (277)
T TIGR00768 118 LIE-----EIGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVG----D-- 186 (277)
T ss_pred HHH-----hcCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEEC----C--
Confidence 332 36789999999999999999999998876544332111 112479999999852 577777773 2
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
+.+. ..... . .. +|..++..++ . ..|..+++ ++++.|.+++++||+ ++++|||++
T Consensus 187 ~~~~--~~~r~--~--------~~---~~~~n~~~g~-~--~~~~~l~~----~~~~~a~~~~~~l~~-~~~~vD~~~-- 241 (277)
T TIGR00768 187 EVIA--AIYRI--T--------SG---HWRTNLARGG-K--AEPCPLTE----EIEELAIKAAKALGL-DVVGIDLLE-- 241 (277)
T ss_pred EEEE--EEEEc--C--------CC---chhhhhhcCC-e--eeecCCCH----HHHHHHHHHHHHhCC-CeEEEEEEE--
Confidence 2221 11000 0 11 1223333232 1 23455654 468899999999999 799999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHH
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 449 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~ 449 (953)
+++|++||+|||++||++.. ...+|+++.+++-
T Consensus 242 ---------------~~~g~~~viEiN~~p~~~~~------~~~~g~~l~~~~~ 274 (277)
T TIGR00768 242 ---------------SEDRGLLVNEVNPNPEFKNS------VKTTGVNIAGKLL 274 (277)
T ss_pred ---------------cCCCCeEEEEEcCCcchhhh------HHHHCCCHHHHHH
Confidence 67889999999999997642 3567998876654
No 70
>PRK07206 hypothetical protein; Provisional
Probab=99.91 E-value=1.3e-22 Score=235.99 Aligned_cols=299 Identities=15% Similarity=0.144 Sum_probs=193.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCce-eeecccccccCCCCCccccccccccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNA-YAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++|++|.|+.+ +..+++++++.||+++.++.+.+... +.. .. ..+++...+.. .....+
T Consensus 3 k~~liv~~~~~---------~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~---~~---~~~~~~~~i~~-----~~~~~l 62 (416)
T PRK07206 3 KKVVIVDPFSS---------GKFLAPAFKKRGIEPIAVTSSCLLDPYYYA---SF---DTSDFIEVIIN-----GDIDDL 62 (416)
T ss_pred CeEEEEcCCch---------HHHHHHHHHHcCCeEEEEEcCCCCchhhhc---cc---CcccchhhhcC-----CCHHHH
Confidence 46777776533 77889999999999987765443110 000 00 00000000000 001111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCch--HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDG--GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg--~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.+. ...++|.|++.. |.. ..+.+.+.+|+|+ |+++.++..+.||+.|++.|+++|||+|+++.+.+.+
T Consensus 63 ~~~~~~~~~d~vi~~~-----e~~~~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~--- 133 (416)
T PRK07206 63 VEFLRKLGPEAIIAGA-----ESGVELADRLAEILTPQY-SNDPALSSARRNKAEMINALAEAGLPAARQINTADWE--- 133 (416)
T ss_pred HHHHHHcCCCEEEECC-----CccHHHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHH---
Confidence 111 235799999954 332 3456777889885 7888899999999999999999999999999886543
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc-----CCCCcEEEeccCCCCeEEEEEEEE
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-----GIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~-----~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++..+.+.+++ .++|+||||..+++|.||.+|++.+|+.+...+++.. ..+..+||||||+| .|+++.++.
T Consensus 134 -e~~~~~~~~g~--~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~~~~ 209 (416)
T PRK07206 134 -EAEAWLRENGL--IDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVNFVS 209 (416)
T ss_pred -HHHHHHHhcCC--CCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEEEEE
Confidence 24444433221 2349999999999999999999999987766654321 12368999999998 999999984
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceE----EEcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA----YHTPPRFPIVVINSIREGASLLFQRLGLC 384 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~----~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~ 384 (953)
. +++.++..... |..+...++... ...| .+.+..++|.+.+.+++++||++
T Consensus 210 ~----~G~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~p--~~~~~~~~i~~~~~~~~~alg~~ 264 (416)
T PRK07206 210 L----DGNHLVTEIVR-------------------YHKTSLNSGSTVYDYDEFLD--YSEPEYQELVDYTKQALDALGIK 264 (416)
T ss_pred E----CCEEEEEEeEE-------------------eeecccCCCCceecccccCC--ccHHHHHHHHHHHHHHHHHcCCc
Confidence 2 22222211110 100111111011 1123 35678899999999999999995
Q ss_pred -CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHH-HHHhCCCHHHHHHHHHHHHhhh
Q 002207 385 -DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ-ASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 385 -G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~-a~~~G~s~~~ll~~li~~a~~r 458 (953)
|..++||++ +++| ++++|||++||-+. .|.+ ..+.|+++.++ +++.++..
T Consensus 265 ~G~~h~E~~~-----------------~~~g-~~liEin~R~~G~~---~~~~~~~~~G~d~~~~---~~~~~lg~ 316 (416)
T PRK07206 265 NGPAHAEVML-----------------TADG-PRLIEIGARLDGGL---HPDVARLATGDSQLDA---TVESLADP 316 (416)
T ss_pred cCCceEEEEE-----------------cCCC-CEEEEECCccCCCC---ccchhhhhcCcCHHHH---HHHHHhCc
Confidence 999999986 5566 89999999998543 3333 34789986554 45555554
No 71
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.91 E-value=1.1e-22 Score=228.67 Aligned_cols=288 Identities=15% Similarity=0.121 Sum_probs=189.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcC--CCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGD--DLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~--g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
|||+|+.+|... +++++|++. ||+|+.++.++..... ... +..+..+.... ......
T Consensus 2 ~~vLv~g~~~~~----------~~~~~l~~~~~g~~vi~~d~~~~~~~~------~~~----d~~~~~p~~~~-~~~~~~ 60 (326)
T PRK12767 2 MNILVTSAGRRV----------QLVKALKKSLLKGRVIGADISELAPAL------YFA----DKFYVVPKVTD-PNYIDR 60 (326)
T ss_pred ceEEEecCCccH----------HHHHHHHHhccCCEEEEECCCCcchhh------Hhc----cCcEecCCCCC-hhHHHH
Confidence 699999886431 667889888 5988877654432111 000 00000110000 000111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
+.+. ...++|+++|...+.....+.....|+..|+++++++..+..++.||..++++|+++|+|+|+++.+.+.+.
T Consensus 61 l~~~~~~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~--- 137 (326)
T PRK12767 61 LLDICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLED--- 137 (326)
T ss_pred HHHHHHHhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHHH---
Confidence 1111 234799999987543322334557788889999999999999999999999999999999999988765332
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+.... .....+||+|+||..+++|.|+.++++.+|+.+...+ ...+|||+||.| +|+++.++.+. +
T Consensus 138 -~~~~~---~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~------~~~~lvqeyi~G-~e~~v~~~~~~---~ 203 (326)
T PRK12767 138 -FKAAL---AKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEY------VPNLIIQEFIEG-QEYTVDVLCDL---N 203 (326)
T ss_pred -HHhhh---hcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHh------CCCeEEEeccCC-ceEEEEEEEcC---C
Confidence 22210 0124689999999999999999999999998765543 248999999997 99999999642 2
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeec
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFL 394 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~ 394 (953)
+.++.....+.. . ...+........ + .+++++.+.+++++||+.|++++||++
T Consensus 204 G~~~~~~~~~~~----------------~----~~~g~~~~~~~~---~---~~~i~~~~~~i~~~lg~~G~~~vd~~~- 256 (326)
T PRK12767 204 GEVISIVPRKRI----------------E----VRAGETSKGVTV---K---DPELFKLAERLAEALGARGPLNIQCFV- 256 (326)
T ss_pred CCEEEEEEeeee----------------e----ecCCceeEEEEc---C---CHHHHHHHHHHHHhcCCeeeEEEEEEE-
Confidence 334332222110 0 001110111111 1 256789999999999999999999986
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
++ |++|++||||+++-+ ++ +..++|+++.+++..++
T Consensus 257 ----------------~~-g~~~viEiNpR~~g~----~~-~~~~~G~n~~~~~~~~~ 292 (326)
T PRK12767 257 ----------------TD-GEPYLFEINPRFGGG----YP-LSYMAGANEPDWIIRNL 292 (326)
T ss_pred ----------------EC-CeEEEEEEeCCCCCc----ch-hhHhhCCCHHHHHHHHH
Confidence 44 779999999988733 12 33578999887765443
No 72
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.91 E-value=7.1e-23 Score=234.41 Aligned_cols=245 Identities=18% Similarity=0.180 Sum_probs=176.2
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
++.+|.|++...... -..+...|+..|+|++|++..++++|+||..+|++ |+++|||||++..+.+.+
T Consensus 25 ~~~id~vi~g~E~~l--~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~---l~~~gIptp~~~~~~~~~------- 92 (379)
T PRK13790 25 QQNVDWVVIGPEQPL--IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKI---MEKYNIPTADYKEVERKK------- 92 (379)
T ss_pred HhCCCEEEECCcHHH--HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHH---HHHCCCCCCCEEEECCHH-------
Confidence 356788886442210 11345677888999999999999999999999999 999999999998876532
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+++.. +++.++.. .....+|||+||+
T Consensus 93 -ea~~~~~~~-g~PvVvKp~~~~~gkGV~iv~~~~el~~---a~~~~~~~-----------------~~~~~vlvEe~i~ 150 (379)
T PRK13790 93 -DALTYIENC-ELPVVVKKDGLAAGKGVIIADTIEAARS---AIEIMYGD-----------------EEEGTVVFETFLE 150 (379)
T ss_pred -HHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHhc-----------------CCCCeEEEEEccc
Confidence 133445678 6999999999999999999999888875 56655422 0135799999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
|+ |+++.++.+++....+.+.. .....+|+++.+++.|.+..++|++. +++
T Consensus 151 G~-------------------------E~sv~~~~~g~~~~~~~~~~--~~~kr~~~~d~g~~tgg~~~~~p~~~--l~~ 201 (379)
T PRK13790 151 GE-------------------------EFSLMTFVNGDLAVPFDCIA--QDHKRAFDHDEGPNTGGMGAYCPVPH--ISD 201 (379)
T ss_pred Cc-------------------------eEEEEEEeeCCEEEeccccc--ccccccccCCCCCcCCCCceEeeCCC--CCH
Confidence 97 99999998643222121111 11235788888888777777788753 577
Q ss_pred HHHHHH-HHHHHHHHHHcCC-----cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHH
Q 002207 872 EALDKC-KQRIELIANALQL-----EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVL 945 (953)
Q Consensus 872 ~~~~~i-~~~a~~~~~aLg~-----~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li 945 (953)
++.+++ ++++++++++|++ .|+.++||+++. +| +||+|+|++||-.....+. ..+-.||++.++
T Consensus 202 ~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g-~~viEiN~R~G~pe~~~~~--------~~~~~Dl~~~~~ 271 (379)
T PRK13790 202 DVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG-PKVIEFNARFGDPEAQVLL--------SRMESDLMQHII 271 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-eEEEEEEcccCCCcceeee--------cccCCCHHHHHH
Confidence 776666 7888888888844 577889999984 44 9999999999874332111 122246777777
Q ss_pred HHHh
Q 002207 946 DLGS 949 (953)
Q Consensus 946 ~~a~ 949 (953)
+.+.
T Consensus 272 ~~~~ 275 (379)
T PRK13790 272 DLDE 275 (379)
T ss_pred HHHc
Confidence 6654
No 73
>PRK08462 biotin carboxylase; Validated
Probab=99.91 E-value=1.1e-22 Score=238.37 Aligned_cols=226 Identities=17% Similarity=0.241 Sum_probs=168.1
Q ss_pred HHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--EeCc
Q 002207 627 WIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--RRKE 703 (953)
Q Consensus 627 ~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v~~~ 703 (953)
.++. .++.+|+|+|.. |..+|+..++.++|.+|+|++|+++.++.+|+||..||++ |+++|||+|++.. +.+.
T Consensus 68 l~~~~~~~~~D~i~pg~-g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~---l~~~gIp~pp~~~~~~~~~ 143 (445)
T PRK08462 68 IISAAEIFEADAIFPGY-GFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEV---MKRAGVPVIPGSDGALKSY 143 (445)
T ss_pred HHHHHHHcCCCEEEECC-CccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcccccCCH
Confidence 3444 345789999986 7889999999999999999999999999999999999999 9999999999742 2221
Q ss_pred cccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHH-HHHhhCCCCCcccccccccCCCCCCC
Q 002207 704 DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE-ECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 704 ~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~-~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
+.+.++.+++ +||+||||..+++|.||.+|++.+||..+.+... .+.... .++
T Consensus 144 --------~~~~~~~~~~-g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~-----------------~~~ 197 (445)
T PRK08462 144 --------EEAKKIAKEI-GYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAF-----------------GDG 197 (445)
T ss_pred --------HHHHHHHHHc-CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhcc-----------------CCC
Confidence 1234455678 6999999999999999999999999986432221 111110 145
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeE
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~ 861 (953)
.++||+||+|. +|+++.++++. |....+ +... ..+.....|+ ...
T Consensus 198 ~vlvEe~i~g~------------------------~e~~v~v~~~~~g~~~~~-g~~~----~~~~~~~~~~-----~~~ 243 (445)
T PRK08462 198 TMYMEKFINNP------------------------RHIEVQILGDKHGNVIHV-GERD----CSLQRRHQKL-----IEE 243 (445)
T ss_pred cEEEeccCCCC------------------------eEEEEEEEECCCCCEEEE-Eecc----ccceecccce-----EEE
Confidence 79999999874 49999999764 332211 1100 0011101111 113
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 862 ~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.|+. .++++..+++++.+.+++++||+.|++++||++++ +|++||+|||++++-+
T Consensus 244 ~p~~--~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~-~g~~~viEiNpR~~~~ 298 (445)
T PRK08462 244 SPAV--VLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDS-NLDFYFMEMNTRLQVE 298 (445)
T ss_pred cCCC--CCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeC-CCCEEEEEEECCcCcC
Confidence 4553 26888999999999999999999999999999985 5789999999999764
No 74
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.91 E-value=1.8e-22 Score=237.66 Aligned_cols=222 Identities=17% Similarity=0.263 Sum_probs=168.4
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
..+|.|+|. +|...|+..++..|+..|++++|+++.++.+|.||..+|++ ++++|||+||+....-.+ .+
T Consensus 73 ~~~daI~pg-~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~---l~~~GVpv~p~~~~~v~~------~~ 142 (499)
T PRK08654 73 AGADAIHPG-YGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKL---MKKAGVPVLPGTEEGIED------IE 142 (499)
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHH---HHHcCcCCCCCcCcCCCC------HH
Confidence 457999996 68899999999999999999999999999999999999999 999999999986531111 12
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.+.++.+++ +||+||||+.+|+|+||.+|++.+||..+ ++.+.... +. . ..++.++||+||+|
T Consensus 143 e~~~~a~~i-gyPvvIKp~~GgGG~Gv~iv~~~~eL~~a---~~~~~~~a------~~----~---f~~~~v~vE~~I~~ 205 (499)
T PRK08654 143 EAKEIAEEI-GYPVIIKASAGGGGIGMRVVYSEEELEDA---IESTQSIA------QS----A---FGDSTVFIEKYLEK 205 (499)
T ss_pred HHHHHHHHh-CCCEEEEeCCCCCCCeEEEeCCHHHHHHH---HHHHHHHH------HH----h---CCCCeEEEEeCCCC
Confidence 244556788 69999999999999999999999999864 44332110 00 0 01467999999997
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
. +|+++.++++. |....+. ..+. .+ ..+++ ......|++. +++
T Consensus 206 ~------------------------r~ieVqvl~d~~G~vv~l~-~rec----si---qrr~q--k~ie~~Pa~~--l~~ 249 (499)
T PRK08654 206 P------------------------RHIEIQILADKHGNVIHLG-DREC----SI---QRRHQ--KLIEEAPSPI--MTP 249 (499)
T ss_pred C------------------------cEEEEEEEEcCCCCEEEEe-eecc----cc---ccCcc--ceEEECCCCC--CCH
Confidence 5 49999999875 3332221 1110 01 11111 1223456653 789
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
++.+++++.|.+++++||+.|.++|||+++ +|++||+||||+++.+
T Consensus 250 ~~~~~l~~~A~~l~~algy~g~gtVEfl~~--~g~~yflEiNpRlqve 295 (499)
T PRK08654 250 ELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFLEMNTRLQVE 295 (499)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEEEE--CCcEEEEEEECCCCCC
Confidence 999999999999999999999999999996 5899999999999765
No 75
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.90 E-value=2.8e-22 Score=235.65 Aligned_cols=222 Identities=19% Similarity=0.247 Sum_probs=167.5
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~ 709 (953)
+..+|+|+|. +|...|+..++..|+..|++++|+++.++.+|.||..+|++ |+++|||+|++. .+.+.
T Consensus 75 ~~~~daI~pg-~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~---l~~~GIp~~p~~~~~v~~~------ 144 (467)
T PRK12833 75 QCGADAIHPG-YGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRT---ARRAGVPTVPGSDGVVASL------ 144 (467)
T ss_pred HhCCCEEEEC-CCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcCcCcCCH------
Confidence 3567999996 57888999889999999999999999999999999999999 999999999985 44321
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHH-HHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE-CLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~-a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
+.+.++.+++ +||+||||+.+|+|.||.+|++.+||.++.+.... +.... .++.++||+
T Consensus 145 --~e~~~~~~~i-gyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~-----------------~~~~vlvEe 204 (467)
T PRK12833 145 --DAALEVAARI-GYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAF-----------------GDGGVYLER 204 (467)
T ss_pred --HHHHHHHHHh-CCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhc-----------------CCCcEEEEe
Confidence 2234456778 69999999999999999999999999864332211 11110 146799999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
||++. +|+++.+++++.....+.+.. ..+..+++ ......|++ .
T Consensus 205 fi~~~------------------------~ei~v~v~~dg~~~~~~~~~~--------~~~~r~~~--ki~e~~p~~--~ 248 (467)
T PRK12833 205 FIARA------------------------RHIEVQILGDGERVVHLFERE--------CSLQRRRQ--KILEEAPSP--S 248 (467)
T ss_pred cCCCC------------------------EEEEEEEEeCCCcEEEEEEee--------cccccCCc--cEEEECCCC--C
Confidence 99853 499999998764322221110 01111111 112234543 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|.++|||+++.++|++||+||||+++.+
T Consensus 249 l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~ 299 (467)
T PRK12833 249 LTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVE 299 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcc
Confidence 688999999999999999999999999999998546889999999999765
No 76
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.90 E-value=2.5e-22 Score=235.88 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=166.3
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~ 709 (953)
++.+|+|+|.. |...|++.++.+|+.+|+||+|+++.++.+|+||..+|++ |+++|||+|++. .+.+.
T Consensus 72 ~~~id~I~p~~-~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~---l~~~gIp~pp~~~~~v~~~------ 141 (451)
T PRK08591 72 ITGADAIHPGY-GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKAT---MKKAGVPVVPGSDGPVDDE------ 141 (451)
T ss_pred HhCCCEEEECC-CccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcccccCCH------
Confidence 45689999975 7788999999999999999999999999999999999999 999999999974 34332
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++...+ +||+||||+.+++|.||.+|++.+||.. +++.+..... .. ...+.++||+|
T Consensus 142 --~~~~~~~~~~-g~PvvvKP~~g~gs~Gv~iv~~~~el~~---~~~~~~~~~~-----~~--------~~~~~vlvEe~ 202 (451)
T PRK08591 142 --EEALAIAKEI-GYPVIIKATAGGGGRGMRVVRTEAELEK---AFSMARAEAK-----AA--------FGNPGVYMEKY 202 (451)
T ss_pred --HHHHHHHHHc-CCCEEEEECCCCCCceEEEECCHHHHHH---HHHHHHHHHH-----Hh--------cCCCCEEEEeC
Confidence 2234456678 6999999999999999999999999886 4444332100 00 01467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-CceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~-~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|+++.+++++. ....+. .. ...+.....+ .....|++ .
T Consensus 203 i~g~------------------------~e~~v~v~~d~~g~~~~~~-~~----~~~~~~~~~~-----~~~~~p~~--~ 246 (451)
T PRK08591 203 LENP------------------------RHIEIQVLADGHGNAIHLG-ER----DCSLQRRHQK-----VLEEAPSP--A 246 (451)
T ss_pred CCCC------------------------cEEEEEEEEcCCCCEEEEe-cc----cccceeccee-----EEEECCCC--C
Confidence 9974 489999988653 322111 00 0001010111 11233543 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|++++||+++. +|++||+|||++++.+
T Consensus 247 l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g~~~viEINpR~~~~ 296 (451)
T PRK08591 247 ITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGEFYFIEMNTRIQVE 296 (451)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CCCEEEEEEECCCCcc
Confidence 6889999999999999999999999999999985 6899999999999765
No 77
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.90 E-value=2.3e-22 Score=233.46 Aligned_cols=303 Identities=16% Similarity=0.139 Sum_probs=191.8
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
.|||+||.+|.. || .++.+|++.|++|+++....+.-.+.....-.. ....+++ .+..+
T Consensus 2 ~~kVLvlG~G~r-e~--------al~~~l~~~g~~v~~~~~~~Npg~~~~a~~~~~-~~~~d~e-----------~l~~~ 60 (435)
T PRK06395 2 TMKVMLVGSGGR-ED--------AIARAIKRSGAILFSVIGHENPSIKKLSKKYLF-YDEKDYD-----------LIEDF 60 (435)
T ss_pred ceEEEEECCcHH-HH--------HHHHHHHhCCCeEEEEECCCChhhhhcccceee-cCCCCHH-----------HHHHH
Confidence 379999987754 23 446778888988876633212111111100000 0000100 11112
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE-EecCCccchhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGSEVNESE 235 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~-~~~~~~~~~~~ 235 (953)
.+ ..++|+|++...+... ..+...|+..|+|..|++..++.++.||..||++|+++|||||+++ .+.+.+ +
T Consensus 61 ~~--~~~id~Vi~~~d~~l~--~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~----e 132 (435)
T PRK06395 61 AL--KNNVDIVFVGPDPVLA--TPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEK----D 132 (435)
T ss_pred HH--HhCCCEEEECCChHHH--HHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChH----H
Confidence 22 3479999998754332 1344566788999999999999999999999999999999998655 443322 1
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeC----CHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY----GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~----~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+..++. ..+||+||||..+.+|.||.+|+ +.+++...+.+.+ ..+..+||||||+| .|+++.++-++
T Consensus 133 ~~~~~~-----~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~~~~~viIEEfl~G-~E~Svd~~~dg- 203 (435)
T PRK06395 133 AARDYI-----TSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--DRDGVVLIEKKMTG-EEFSLQAFSDG- 203 (435)
T ss_pred HHHHHH-----hhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh--CCCCcEEEEeecCC-ceEEEEEEEcC-
Confidence 222221 25789999999999999999994 3456565555543 23568999999998 99999999532
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEc-----CCCCCHHHHHHHHHHHHHHHHHhC----
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-----PPRFPIVVINSIREGASLLFQRLG---- 382 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~-----Pa~l~~~~~~~i~~~a~~~~~aLg---- 382 (953)
. ....+++.+. .+..|+.+.-...++ +..+. |+.+++++.+++++++.+++++|+
T Consensus 204 -~--~~~~l~~~~d------------~~r~~~~d~gp~tGg-mG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~ 267 (435)
T PRK06395 204 -K--HLSFMPIVQD------------YKRAYEGDHGPNTGG-MGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENN 267 (435)
T ss_pred -C--eEEEecccce------------eeecccCCCCCccCC-CccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 2233333221 112333221111121 22222 334899999999999999999999
Q ss_pred -CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCc-chHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 383 -LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT-SFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 383 -~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~-S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++|+..+++++ +++| +||+|+|+++|=..+ .++|.+ +. ++++.++..+..+
T Consensus 268 ~~~G~l~~~~~l-----------------t~~g-p~ViE~n~R~gdpe~~~il~~l----~~---d~~~~~~~~~~g~ 320 (435)
T PRK06395 268 PFKGIMYGQFMD-----------------TPNG-VKVIEINARFADPEGINVLYLL----KS---DFVETLHQIYSGN 320 (435)
T ss_pred ceEEEEEEEEEE-----------------eCCC-cEEEEEeCCCCCccHHhhhhhc----cc---CHHHHHHHHhcCC
Confidence 57777899876 5566 999999999995543 344433 44 5555555555553
No 78
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.90 E-value=2.4e-22 Score=236.46 Aligned_cols=229 Identities=18% Similarity=0.254 Sum_probs=170.3
Q ss_pred HHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCcc
Q 002207 626 EWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 704 (953)
Q Consensus 626 ~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~ 704 (953)
..++.++ +.+|+|+|. +|..+|+..++.+++.+|+|++|+++.++.+|+||..+|++ |+++|||+|++....-.+
T Consensus 64 ~i~~~a~~~~~D~I~pg-~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~---l~~~GIp~pp~~~~~~~~ 139 (472)
T PRK07178 64 RLVNLAVETGCDALHPG-YGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRA---MIKAGVPVTPGSEGNLAD 139 (472)
T ss_pred HHHHHHHHHCCCEEEeC-CCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHH---HHHCCCCCCCCcCcCCCC
Confidence 3344433 578999997 58899999999999999999999999999999999999999 999999999975421111
Q ss_pred ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH-HHHHhhCCCCCcccccccccCCCCCCCe
Q 002207 705 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL-EECLLRIPPNSFSRAHGMIEMPNPPPEI 783 (953)
Q Consensus 705 ~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al-~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 783 (953)
.+.+.++.+++ +||+||||+.+|+|.||.+|++.+||..+.+.. ..+.... .+..
T Consensus 140 ------~~e~~~~~~~i-gyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~-----------------~~~~ 195 (472)
T PRK07178 140 ------LDEALAEAERI-GYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAF-----------------GSAE 195 (472)
T ss_pred ------HHHHHHHHHHc-CCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhc-----------------CCCC
Confidence 12233455788 699999999999999999999999998643322 2222111 1457
Q ss_pred EEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 784 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
+++|+||++. +|+++.++++. |....+.+.. .....++ .......
T Consensus 196 v~iE~~i~~~------------------------~eiev~v~~d~~G~~v~~~er~--------~s~~~~~--~~~~e~~ 241 (472)
T PRK07178 196 VFLEKCIVNP------------------------KHIEVQILADSHGNVVHLFERD--------CSIQRRN--QKLIEIA 241 (472)
T ss_pred EEEEEcCCCC------------------------eEEEEEEEEECCCCEEEEEccc--------cceEecC--cceEEEC
Confidence 9999999875 59999999864 3322221110 0111001 1122345
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
|++ .+++++.+++++.+.+++++||+.|.++|||+++. +|++||+||||+++.+
T Consensus 242 P~~--~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~-~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 242 PSP--QLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DGEVYFMEMNTRVQVE 295 (472)
T ss_pred CCC--CCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeC-CCCEEEEEEeCCcCCC
Confidence 654 37899999999999999999999999999999985 6889999999998765
No 79
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.90 E-value=4e-22 Score=234.77 Aligned_cols=222 Identities=17% Similarity=0.239 Sum_probs=168.4
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEE-eCccccCCchh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR-RKEDLLKTPIV 711 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v-~~~~~~~~~~~ 711 (953)
..+|.|+|. .|..+|+..++..|+.+|++++|+++.++.+|+||..+|++ ++++|||+|++... ...+ .
T Consensus 72 ~~iDaI~pg-~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~---l~~~gIpvpp~~~~~~~~~------~ 141 (478)
T PRK08463 72 CGADAIHPG-YGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYL---MKKNGIPIVPGTEKLNSES------M 141 (478)
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHH---HHHcCCCCCCCccccCCCC------H
Confidence 467999996 58889999999999999999999999999999999999999 89999999886543 2111 1
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHH-HHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE-ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~-~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
+.+.++.+++ +||+||||+.+|+|+||.+|++.+||..+.+... .+..+. .++.++||+||
T Consensus 142 ~~~~~~~~~i-gyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~-----------------~~~~vlvEefI 203 (478)
T PRK08463 142 EEIKIFARKI-GYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYF-----------------NNDEVFMEKYV 203 (478)
T ss_pred HHHHHHHHHh-CCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhc-----------------CCCcEEEEecC
Confidence 2234456778 6999999999999999999999999986433221 122211 15679999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
+|. +|+++.++++. +....+. .. + .+...++ .......|++ .+
T Consensus 204 ~~~------------------------~~iev~v~~d~~g~v~~~~------er-~-~s~~~~~--~~~ie~~P~~--~l 247 (478)
T PRK08463 204 VNP------------------------RHIEFQILGDNYGNIIHLC------ER-D-CSIQRRH--QKVIEIAPCP--SI 247 (478)
T ss_pred CCC------------------------eEEEEEEEEcCCCCEEEEe------cc-C-Ccccccc--CceEEECCCC--CC
Confidence 874 48999999875 3322211 10 0 0111111 1123456765 37
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
++++.+++++.+.+++++||+.|++++||+++. +|++||+||||+++.+
T Consensus 248 ~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~~~y~iEiN~R~~~~ 296 (478)
T PRK08463 248 SDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YNRFYFMEMNTRIQVE 296 (478)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEEEEECCcCCC
Confidence 899999999999999999999999999999985 6899999999999866
No 80
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.90 E-value=1.6e-21 Score=228.08 Aligned_cols=239 Identities=18% Similarity=0.152 Sum_probs=162.4
Q ss_pred cCcCEEEEcCCCCCCCchH---HHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCC-CeEEecCCccchhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGG---IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITV-PSFLLQGSEVNESELS 237 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~---iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp-~~~~~~~~~~~~~~~~ 237 (953)
.++|+|++. +|++. +...|+.+|+|+.|++..++.+++||..+|++|+++||||| .+..+.+.+ ++.
T Consensus 68 ~~id~Vi~g-----~E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~----ea~ 138 (486)
T PRK05784 68 VNPDLVVIG-----PEEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDVE----EAA 138 (486)
T ss_pred hCCCEEEEC-----CchHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCHH----HHH
Confidence 479999983 46664 55778999999999999999999999999999999999997 566665432 233
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHH--------HH-HHHHHhHhc-----CCCCcEEEeccCCCCeEEE
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID--------SL-KKAKGIILE-----GIDDRVVVELFLEGGSEFT 303 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~e--------l~-~~a~~~~~~-----~~~~~vlVEefI~Gg~E~t 303 (953)
++++ ..+|+||||..+++|.||.+|++.++ +. +++.+++.. ..+..+||||||+| +|++
T Consensus 139 ~~~~------~~~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E~S 211 (486)
T PRK05784 139 KFIE------YGGSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VEYT 211 (486)
T ss_pred HHHh------hcCCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eEEE
Confidence 3332 23699999999999999999999763 22 222232211 12468999999998 9999
Q ss_pred EEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC-----CCCCHHHHHHHHHHHHHHH
Q 002207 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP-----PRFPIVVINSIREGASLLF 378 (953)
Q Consensus 304 v~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P-----a~l~~~~~~~i~~~a~~~~ 378 (953)
|.++.++ . ..+.++..+ +...+++++.....++ +....| +.++++..+++.+++..++
T Consensus 212 V~al~dG--~--~~~~l~~~q------------d~k~~~~~d~gpntGg-mg~~~p~~~~~P~~~~~~~~~~~~~v~~~l 274 (486)
T PRK05784 212 LQVLTDG--E--TVIPLPLAQ------------DYPHAYEDGIGPETGG-MGSISGPGELLPFINEEEYEEAVEIVKRTI 274 (486)
T ss_pred EEEEECC--C--eEEEeeeeE------------eecceecCCCCCCCCC-CcccCCccccCCCCCHHHHHHHHHHHHHHH
Confidence 9999532 1 222232221 0234555544333333 222344 2367777777778888877
Q ss_pred HHhC----C--CCeeEeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCc-chHHHHHHHhCCCHHHHHHH
Q 002207 379 QRLG----L--CDFARIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQT-SFLFQQASKVGFSHSNILRT 450 (953)
Q Consensus 379 ~aLg----~--~G~arVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~-S~~p~~a~~~G~s~~~ll~~ 450 (953)
++|+ + +|+.++++++ + ++| +++||+|.+.|=..+ .++| ..+- +|++.
T Consensus 275 ~al~~~~g~~~~G~l~~elml-----------------t~~~G-P~vIE~n~R~Gdpe~~~llp----~l~~---dl~~~ 329 (486)
T PRK05784 275 DAIYKETGERYVGVISGQMML-----------------TELWG-PTVIEYYSRFGDPEASNIIP----RIES---DFGEL 329 (486)
T ss_pred HHHHHhcCCCcEEEEEEEEEE-----------------ecCCC-cEEEEEecccCCchHHHHHH----hccC---CHHHH
Confidence 7765 3 4899999876 6 566 999999999994433 2333 2333 45555
Q ss_pred HHHHHhhh
Q 002207 451 IIGHACSR 458 (953)
Q Consensus 451 li~~a~~r 458 (953)
++..+..+
T Consensus 330 ~~~~~~g~ 337 (486)
T PRK05784 330 FELAATGK 337 (486)
T ss_pred HHHHHcCC
Confidence 56665555
No 81
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.89 E-value=2.5e-21 Score=222.04 Aligned_cols=355 Identities=18% Similarity=0.174 Sum_probs=251.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc---cccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA---QGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 154 (953)
.||+|--=| || |-.|.+|..+.|...+.||-..|--.++. ..+|-...+-... .....+.
T Consensus 8 ~KvLVANRg-----EI----AIRvFRAa~ELgi~TVAIys~ED~~S~HR--------~KADEsY~iG~~~~Pi~aYL~Id 70 (1149)
T COG1038 8 KKVLVANRG-----EI----AIRVFRAANELGIKTVAIYSEEDRLSLHR--------FKADESYLIGEGKGPVEAYLSID 70 (1149)
T ss_pred heeeeeccc-----hh----hHHHHHHHHhcCceEEEEeeccccchhhh--------ccccceeeecCCCCchHHhccHH
Confidence 467776422 44 77899999999999998875443211110 1111111110000 0111223
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
+++.. .....|+|-|.. |...|+..+..-|...||-|+|+.+....+..||..++....++|+|+.|..-- .-...
T Consensus 71 eII~iAk~~gaDaIhPGY-GfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~--~~~~~ 147 (1149)
T COG1038 71 EIIRIAKRSGADAIHPGY-GFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDG--PIETI 147 (1149)
T ss_pred HHHHHHHHcCCCeecCCc-ccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCC--CcccH
Confidence 33322 234789887765 566699999999999999999999999999999999999999999999886321 11123
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
+++.++.+ ..+||++||.+.||++.|+.+|.+.+++.+...++-+ .-.++.|.||+||++.+.++|.+++|
T Consensus 148 ee~~~fa~-----~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD 222 (1149)
T COG1038 148 EEALEFAE-----EYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGD 222 (1149)
T ss_pred HHHHHHHH-----hcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeec
Confidence 34444443 4789999999999999999999999876655443211 11367899999999889999999998
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
..||- +-+. +. =.+.+.. .+++....|+. |+++++++|.+.|.++++..|+.+.+.
T Consensus 223 ~~Gnv---vHLf----ER-------------DCSvQRR---hQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGT 279 (1149)
T COG1038 223 THGNV---VHLF----ER-------------DCSVQRR---HQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGT 279 (1149)
T ss_pred CCCCE---EEEe----ec-------------ccchhhc---cceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccce
Confidence 77652 1110 10 0112222 33466778987 999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC---CCCCCC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF---PNLASY 465 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~---~~~~~~ 465 (953)
|+|.+ +.+|++|||||||+-..+.|-- -.-+|+ |++...|..|-.-- +.+-.+
T Consensus 280 vEFLv-----------------d~~~~fyFIEvNPRiQVEHTiT----E~vTgi---DIV~aQi~ia~G~~l~~~e~glp 335 (1149)
T COG1038 280 VEFLV-----------------DEDGKFYFIEVNPRIQVEHTIT----EEITGI---DIVKAQIHIAAGATLHTPELGLP 335 (1149)
T ss_pred EEEEE-----------------cCCCcEEEEEecCceeeEEeee----eeeech---hHHHHHHHHhccCccCCcccCCC
Confidence 99976 6789999999999888765421 123577 67888887764431 122222
Q ss_pred CC-----cceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NS-----VSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
.+ .+++|+||+..+||...|+|.++++..+--.||....
T Consensus 336 ~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVR 379 (1149)
T COG1038 336 QQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVR 379 (1149)
T ss_pred ccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCceEE
Confidence 22 2699999999999999999999999999888887764
No 82
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.89 E-value=9.3e-22 Score=216.72 Aligned_cols=244 Identities=20% Similarity=0.249 Sum_probs=185.2
Q ss_pred hhcCCcEEEEecCCCCCCccHH----HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCcccc
Q 002207 631 AKENQATVFIAVHGGIGEDGTL----QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLL 706 (953)
Q Consensus 631 ~~~~~dvvf~~~hG~~GEdg~i----q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~ 706 (953)
.+|.+|.++|.+.|+.+.+-.+ .+.|+.+||+.+|++..+..+|.||..||++ |++.|+|+| .......
T Consensus 67 ~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~---m~eigi~~P-~~~~~~~--- 139 (400)
T COG0458 67 EKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEA---MREIGIPVP-SRIAHSV--- 139 (400)
T ss_pred HhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHH---HHHcCCCCC-ccccccH---
Confidence 4678999999999998886533 4788999999999999999999999999999 999999999 3333221
Q ss_pred CCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEE
Q 002207 707 KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786 (953)
Q Consensus 707 ~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlV 786 (953)
+..++....+ +||+||||+.+-+|.|..+++|.+||.++ ++..+... +-..+|+
T Consensus 140 -----~e~~~~~~~i-g~PvIVrP~~~lGG~G~~i~~n~eel~~~---~~~~l~~s-----------------~~~~vl~ 193 (400)
T COG0458 140 -----EEADEIADEI-GYPVIVKPSFGLGGSGGGIAYNEEELEEI---IEEGLRAS-----------------PVEEVLI 193 (400)
T ss_pred -----HHHhhhHhhc-CCCEEEecCcCCCCCceeEEeCHHHHHHH---HHhccccC-----------------cccccee
Confidence 2234556778 69999999999999999999999999863 44444331 2468999
Q ss_pred eccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCC
Q 002207 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866 (953)
Q Consensus 787 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~ 866 (953)
|++|.|. .|++..++.+......+...++.... ...+.+.+....|++
T Consensus 194 eesi~G~------------------------ke~e~ev~rd~~~n~ivvc~men~dp-------~gvhtgdsi~vapaq- 241 (400)
T COG0458 194 EESIIGW------------------------KEFEYEVVRDGKDNCIVVCNMENLDP-------MGVHTGDSITVAPAQ- 241 (400)
T ss_pred eeeecCc------------------------eEEEEEEEEeCCCCEEEEEeCCcccc-------ccccccceeeecccc-
Confidence 9999984 79999999876543322222221111 123445566667776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHH
Q 002207 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLD 946 (953)
Q Consensus 867 ~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~ 946 (953)
++++...+.++..+.++.++||..|-++|||.+++++|++|++|+| |.++.+|-| |..+. .||..-+...+.
T Consensus 242 -tl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvN--pRvSrssaL---askAt--gypia~vaakla 313 (400)
T COG0458 242 -TLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEIN--PRVSRSSAL---ASKAT--GYPIAKVAAKLA 313 (400)
T ss_pred -ccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEec--CCcCcchhh---hhhcc--CChHHHHHHHhh
Confidence 4788889999999999999999999999999999766799999999 566677633 33333 499876665554
Q ss_pred H
Q 002207 947 L 947 (953)
Q Consensus 947 ~ 947 (953)
.
T Consensus 314 ~ 314 (400)
T COG0458 314 V 314 (400)
T ss_pred c
Confidence 3
No 83
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.89 E-value=1.4e-21 Score=229.49 Aligned_cols=224 Identities=17% Similarity=0.209 Sum_probs=163.4
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
++.+|+|++. +|...|++.++..|+.+|+|+.|++..++.+|.||..+|++ |+++|||+|++......+ .
T Consensus 72 ~~~id~I~p~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~---l~~~gIp~p~~~~~~~~~------~ 141 (450)
T PRK06111 72 KTGAEAIHPG-YGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRA---MQAAGVPVVPGITTNLED------A 141 (450)
T ss_pred HhCCCEEEeC-CCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcCcCcCC------H
Confidence 4567999986 57788988899999999999999999999999999999999 999999999973221111 1
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
+.+.++.+.+ +||+||||..+++|.||.+|++.+||..+ ++....... .. ..+..++||+||+
T Consensus 142 ~e~~~~~~~~-~~P~VvKP~~g~gs~Gv~iv~~~~el~~a---~~~~~~~~~-----~~--------~~~~~~lvEe~i~ 204 (450)
T PRK06111 142 EEAIAIARQI-GYPVMLKASAGGGGIGMQLVETEQELTKA---FESNKKRAA-----NF--------FGNGEMYIEKYIE 204 (450)
T ss_pred HHHHHHHHHh-CCCEEEEeCCCCCCceEEEECCHHHHHHH---HHHHHHHHH-----Hh--------cCCCcEEEEcccC
Confidence 1233445678 69999999999999999999999998864 443321100 00 0145799999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
|. +|+++.++.+. +....+.+.. ..+.... ++ .....|++. ++
T Consensus 205 g~------------------------~e~~v~v~~~~~g~~~~~~~~~-----~~~~~~~-~~----~~~~~p~~~--~~ 248 (450)
T PRK06111 205 DP------------------------RHIEIQLLADTHGNTVYLWERE-----CSVQRRH-QK----VIEEAPSPF--LD 248 (450)
T ss_pred CC------------------------cEEEEEEEEcCCCCEEEEEeec-----ccccccc-cc----eEEecCCCC--CC
Confidence 85 38899888764 3322221110 0011100 00 111234432 57
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++.+++++++.+++++||+.|++++||+++. +|++||+|||++++.+
T Consensus 249 ~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g~~~viEiN~R~~~~ 296 (450)
T PRK06111 249 EETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKNFYFLEMNTRLQVE 296 (450)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEEEEECCcCCc
Confidence 88999999999999999999999999999985 5779999999999754
No 84
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=99.89 E-value=8.2e-24 Score=201.15 Aligned_cols=117 Identities=35% Similarity=0.401 Sum_probs=78.4
Q ss_pred eEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhh
Q 002207 492 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 571 (953)
Q Consensus 492 ~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 571 (953)
|||+|||||+|+||||||+||++|+++|+. ++|+|+||+|+++|.|+..... ..
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~-~~y~v~~i~i~k~g~~~~~~~~-------------------------~~ 54 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDK-EKYEVIPIYIDKDGRWYLGEGP-------------------------EE 54 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHT-TTEEEEEEEETTTSCEEEEHHH-------------------------CS
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhh-hcceEEEEeecCCCCEEEcccc-------------------------hh
Confidence 689999999999999999999999999975 9999999999998766642111 00
Q ss_pred HHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCccH
Q 002207 572 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 651 (953)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg~ 651 (953)
...... ..... .. ......... .... ......|+|||++||++||||+
T Consensus 55 ~~~~~~-~~~~~-----~~-------------~~~~~~~~~---~~~~----------~~~~~~DvvFp~lHG~~GEDG~ 102 (117)
T PF01820_consen 55 YLDNDD-DEEFS-----FK-------------PLPEISASL---IEKN----------EQKLEVDVVFPVLHGPNGEDGT 102 (117)
T ss_dssp HHHTTT-CCCHE-----ES-------------SSCCEEEEE---TTES----------TTCTTCSEEEEECCSTTTSSSH
T ss_pred hcccCc-hhhcc-----cc-------------ccccccccc---cccc----------cccccCCEEEEeccCCCCcccH
Confidence 000000 00000 00 000000000 0000 0134579999999999999999
Q ss_pred HHHHHHHcCCCEeCC
Q 002207 652 LQSLLEAEGVPYTGP 666 (953)
Q Consensus 652 iq~llE~~gIPy~G~ 666 (953)
||++||.+|||||||
T Consensus 103 iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 103 IQGLLELLGIPYVGC 117 (117)
T ss_dssp HHHHHHHTT-EBSSS
T ss_pred HHHHHHHcCCCCcCC
Confidence 999999999999997
No 85
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.89 E-value=1.4e-21 Score=227.39 Aligned_cols=224 Identities=16% Similarity=0.162 Sum_probs=162.0
Q ss_pred cCCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+. .+...|+.+|+|++|++..++.+|+||..+|++ |+++|||||++..+.+.+
T Consensus 61 ~~id~vi~~-----~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 127 (420)
T PRK00885 61 EGIDLTVVG-----PEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDF---MARYGIPTAAYETFTDAE----- 127 (420)
T ss_pred hCCCEEEEC-----CchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHH---HHHcCCCCCCeEEeCCHH-----
Confidence 468999863 2333 345678889999999999999999999999999 999999999998886532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.++... .+. .....+|||||
T Consensus 128 ---~~~~~~~~~-~~P~VvKP~~~~gs~Gv~~v~~~~el~~---~~~~~~~~~---~~~----------~~~~~vlvEe~ 187 (420)
T PRK00885 128 ---EALAYLDEK-GAPIVVKADGLAAGKGVVVAMTLEEAKA---AVDDMLAGN---KFG----------DAGARVVIEEF 187 (420)
T ss_pred ---HHHHHHHHc-CCCEEEEeCCCCCCCcEEEeCCHHHHHH---HHHHHhhcc---ccc----------CCCCeEEEEEc
Confidence 233455678 6999999999999999999999998875 455554310 000 01467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |+++.++.+++. +...+..+. ...+++.+.+.+.+....+.|++. +
T Consensus 188 i~G~-------------------------E~sv~~~~~g~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~p~~~--l 237 (420)
T PRK00885 188 LDGE-------------------------EASFFAFVDGEN-VLPLPTAQD--HKRAGDGDTGPNTGGMGAYSPAPV--V 237 (420)
T ss_pred cCCc-------------------------EEEEEEEECCCc-eEeceeeEe--eeecccCCCCCCCCCCceeccCCC--C
Confidence 9997 999999986543 333333321 123444444444455555677753 5
Q ss_pred CHHHHHHHHH-HHHHHHH---HcCC--cceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 870 STEALDKCKQ-RIELIAN---ALQL--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 870 ~~~~~~~i~~-~a~~~~~---aLg~--~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
+++..+++++ +++++.+ ++|+ .|+.++|||++. + .+||+|+|+++|.+..
T Consensus 238 ~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~-~-g~~viEin~R~g~~~~ 293 (420)
T PRK00885 238 TEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITK-D-GPKVIEFNARFGDPET 293 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEEC-C-CcEEEEEecccCCccH
Confidence 7777777664 5555555 4444 699999999984 4 4899999999997644
No 86
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.89 E-value=2.5e-21 Score=220.10 Aligned_cols=192 Identities=22% Similarity=0.222 Sum_probs=148.1
Q ss_pred HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 002207 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731 (953)
Q Consensus 652 iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~ 731 (953)
.-..|+..|+| ++++..+..+|+||..+|++ |+++|||+|++..+.+.+ .+.++.+.+ +||+||||.
T Consensus 75 ~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~--------~~~~~~~~~-g~P~vvKp~ 141 (352)
T TIGR01161 75 ALEKLEARGVK-LFPSPDALAIIQDRLTQKQF---LQKLGLPVPPFLVIKDEE--------ELDAALQEL-GFPVVLKAR 141 (352)
T ss_pred HHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHH---HHHcCCCCCCccEeCCHH--------HHHHHHHHc-CCCEEEEeC
Confidence 34567888987 56999999999999999999 999999999999887532 244556678 699999999
Q ss_pred CCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 732 RDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 732 ~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
.+| +|.|+.+|++.+|+.. +++... ...+|||+||++.
T Consensus 142 ~~g~~g~Gv~~v~~~~el~~---a~~~~~---------------------~~~~lvEe~I~~~----------------- 180 (352)
T TIGR01161 142 TGGYDGRGQYRIRNEADLPQ---AAKELG---------------------DRECIVEEFVPFE----------------- 180 (352)
T ss_pred CCCCCCCCEEEECCHHHHHH---HHHhcC---------------------CCcEEEEecCCCC-----------------
Confidence 987 7999999999998875 343321 3479999999953
Q ss_pred hcCCCceeEEEEEEEcC-CCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 002207 811 WKGNSRWVEITVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~-~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg 889 (953)
+|+++.++.+ +|... +.|..+.....+++ ...+.|+. +++++.+++++++++++++||
T Consensus 181 -------~E~sv~~~~~~~G~~~-~~~~~~~~~~~g~~----------~~~~~p~~---~~~~~~~~~~~~a~~i~~~l~ 239 (352)
T TIGR01161 181 -------RELSVIVARSADGETA-FYPVVENIHQDGIL----------RYVVAPAA---VPDAIQARAEEIARRLMEELG 239 (352)
T ss_pred -------eEEEEEEEEcCCCCEE-EECCcccEEeCCEE----------EEEECCCC---CCHHHHHHHHHHHHHHHHHcC
Confidence 3999988765 34433 33433221111111 12356775 678889999999999999999
Q ss_pred CcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 890 ~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+.|+.+||||++. +|++|||||||+||-+
T Consensus 240 ~~G~~~ve~~~~~-dg~~~v~EinpR~~~s 268 (352)
T TIGR01161 240 YVGVLAVEMFVLP-DGRLLINELAPRVHNS 268 (352)
T ss_pred ceeEEEEEEEEeC-CCcEEEEEecCCCCCc
Confidence 9999999999985 6889999999999843
No 87
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.88 E-value=4.7e-21 Score=220.16 Aligned_cols=216 Identities=24% Similarity=0.258 Sum_probs=157.7
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++....- .. ..+ ..|+.+|+|+ .++..+..+|+||..+++++ ++++|||+|+|..+.+.+
T Consensus 61 ~~id~v~~~~e~v-~~-~~~-~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~~--~~~~gip~p~~~~~~~~~-------- 126 (380)
T TIGR01142 61 EKPDYIVPEIEAI-AT-DAL-FELEKEGYFV-VPNARATKLTMNREGIRRLA--AEELGLPTSRYMFADSLD-------- 126 (380)
T ss_pred hCCCEEEeccCcc-CH-HHH-HHHHhcCCee-CCCHHHHHHhhCHHHHHHHH--HHHCCCCCCCceEeCCHH--------
Confidence 4689998865332 11 234 3568899874 67899999999999999972 379999999999887532
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+||.. +++.+.... + ...+.+|||+||+|
T Consensus 127 ~~~~~~~~~-g~P~VvKP~~g~~s~gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~ivEe~i~~ 187 (380)
T TIGR01142 127 ELREAVEKI-GYPCVVKPVMSSSGKGQSVVRGPEDIEK---AWEYAQEGA------R---------GGAGRVIVEEFIDF 187 (380)
T ss_pred HHHHHHHHc-CCCEEEEECCCcCCCCeEEECCHHHHHH---HHHHHHhhc------c---------CCCCCEEEEEecCC
Confidence 234455678 6999999999999999999999999886 444443210 0 01467999999997
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
. .|+++.++... |......+. . .+..+.+|. ..+.|++ +++
T Consensus 188 ~------------------------~E~sv~~~~~~~g~~~~~~~~-~------~~~~~~~~~----~~~~p~~---l~~ 229 (380)
T TIGR01142 188 D------------------------YEITLLTVRHVDGNTTFCAPI-G------HRQIDGDYH----ESWQPQE---MSE 229 (380)
T ss_pred C------------------------EEEEEEEEEcCCCCEEEecCc-c------eEEeCCeeE----EEECCCC---CCH
Confidence 4 49998887543 332222221 1 111122221 2356765 689
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++.+++++++++++++||+.|++++|||++ ++++||+|||++||.+..
T Consensus 230 ~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~--~~~~~viEinpR~~~~~~ 277 (380)
T TIGR01142 230 KALEEAQRIAKRITDALGGYGLFGVELFVK--GDEVIFSEVSPRPHDTGM 277 (380)
T ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEE--CCcEEEEEeecCCCCCce
Confidence 999999999999999999999999999998 357999999999997644
No 88
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.88 E-value=4.1e-21 Score=241.72 Aligned_cols=300 Identities=15% Similarity=0.128 Sum_probs=200.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeee-cccccccCCCCCccccccccccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI-SSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
|.|++|-.+.+. +++.+++++++.||+|+.+.-++....+.. ........+..|.+ .+..+
T Consensus 3 ~~~~~ie~~~~~-------~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~-----------~l~~~ 64 (887)
T PRK02186 3 GIFVFIESNTTG-------TGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPD-----------RIHRF 64 (887)
T ss_pred cEEEEEcCCCCc-------cHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHH-----------HHHHH
Confidence 467777666554 477889999999999987643322100000 00000000000100 01112
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
+..+ ..+|.|++... ++ --....+.+.+|+| |+++.++.+++||..+|++|+++|||+|++..+.+.+. +
T Consensus 65 ~~~~-~~i~~V~~~se--~~-v~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e----~ 134 (887)
T PRK02186 65 VSSL-DGVAGIMSSSE--YF-IEVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAV----A 134 (887)
T ss_pred HHhc-CCCCEEEeCch--hh-HHHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHHH----H
Confidence 2221 25788887642 11 12456788999999 78899999999999999999999999999998876432 3
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
.++.+ ..+||+||||.++++|.||.+|+|.+|+.+....+.. .....+|||+||+| +||+|.++.++ +.
T Consensus 135 ~~~~~-----~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~-~~~~~~lvEEfI~G-~E~sVe~i~~~----g~ 203 (887)
T PRK02186 135 LDALD-----GLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRR-AGTRAALVQAYVEG-DEYSVETLTVA----RG 203 (887)
T ss_pred HHHHH-----hCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHh-cCCCcEEEeecccC-CcEEEEEEEEC----Cc
Confidence 33332 3688999999999999999999999998766655433 23568999999998 99999998642 12
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCC-CeeEeeeeecC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLC-DFARIDGWFLP 395 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~-G~arVDf~~~~ 395 (953)
..++...+.. ......|.. ..+..|+.++++..+++.+.+.+++++||++ |+.++||++
T Consensus 204 ~~i~~i~~k~---------------~~~~~~~ve---~g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~-- 263 (887)
T PRK02186 204 HQVLGITRKH---------------LGPPPHFVE---IGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRV-- 263 (887)
T ss_pred EEEEEEEeee---------------cCCCCCeEE---eccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEE--
Confidence 2222222111 000011111 2235788999999999999999999999996 999999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHH-HhCCCHHHHHHHHHHHHhhh
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS-KVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~-~~G~s~~~ll~~li~~a~~r 458 (953)
+++ .+||+|||+++|- +++|.+.. +.|+|+. +.+++.++..
T Consensus 264 ---------------t~~-g~~liEIn~R~~G---~~i~~li~~a~Gvd~~---~~~i~~~lG~ 305 (887)
T PRK02186 264 ---------------RGD-TVVIIEINPRLAG---GMIPVLLEEAFGVDLL---DHVIDLHLGV 305 (887)
T ss_pred ---------------ECC-CEEEEEECCCCCC---ccHHHHHHHHHCcCHH---HHHHHHhCCC
Confidence 444 4999999999872 45565444 6799864 4455656654
No 89
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.88 E-value=5.9e-21 Score=222.50 Aligned_cols=227 Identities=19% Similarity=0.187 Sum_probs=161.1
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
+..+|+||+..+... -..+...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|+|..+.+.+
T Consensus 62 ~~~id~vi~~~e~~l--~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gIp~p~~~~~~~~~------- 129 (423)
T TIGR00877 62 KKKIDLAVIGPEAPL--VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDF---MKRYGIPTAEYEVFTDPE------- 129 (423)
T ss_pred HhCCCEEEECCchHH--HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHH---HHHCCCCCCCeEEECCHH-------
Confidence 356889987543211 12467888999999999999999999999999999 999999999999886532
Q ss_pred hHHHHHHhhcCCCc-EEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 712 DIWHELTSKLQCKT-LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 712 ~~~~~~~~~lg~~P-lvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.++.+.+ +|| +||||..+++|.||.++++.+|+.. +++..+... + + .....+|||+||
T Consensus 130 -~~~~~~~~~-g~P~~VvKp~~~~gg~Gv~~v~~~~el~~---~~~~~~~~~----~----g------~~~~~~lvEe~i 190 (423)
T TIGR00877 130 -EALSYIQEK-GAPAIVVKADGLAAGKGVIVAKTNEEAIK---AVEEILEQK----F----G------DAGERVVIEEFL 190 (423)
T ss_pred -HHHHHHHhc-CCCeEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHHHh----c----C------CCCCeEEEEECc
Confidence 234455678 699 9999999999999999999988875 455544320 0 0 013579999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+|. |+++.++.+++.. ...+..+. ...+++++.+...+....+.|++. ++
T Consensus 191 ~G~-------------------------E~sv~~~~dg~~~-~~~~~~~~--~~~~~~~~~~~~~g~~~~~~p~~~--~~ 240 (423)
T TIGR00877 191 DGE-------------------------EVSLLAFVDGKTV-IPMPPAQD--HKRALEGDKGPNTGGMGAYSPAPV--FT 240 (423)
T ss_pred cCc-------------------------eEEEEEEEcCCeE-Eeceeeee--eeecccCCCCCCCCCCceecCCCC--CC
Confidence 997 9999999765433 33333221 123445554444444455677652 56
Q ss_pred HHHHHHH-HHHHH---HHHHHcC--CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 871 TEALDKC-KQRIE---LIANALQ--LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 871 ~~~~~~i-~~~a~---~~~~aLg--~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++..+++ ++.+. ++++++| +.|+.++|||++. +| +||+|||+++|-+..
T Consensus 241 ~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g-~~viEin~R~g~~~~ 295 (423)
T TIGR00877 241 EEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG-PKVLEFNCRFGDPET 295 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC-cEEEEEEccCCCccc
Confidence 6655443 33444 4444444 5799999999984 45 999999999996544
No 90
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.87 E-value=1.1e-20 Score=216.06 Aligned_cols=183 Identities=24% Similarity=0.265 Sum_probs=143.3
Q ss_pred CEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC-CCcceE
Q 002207 662 PYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG-CSTGVA 740 (953)
Q Consensus 662 Py~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~g-sS~GV~ 740 (953)
..++++..+..+|+||..+|++ |+++|||+|+|..+.+.+ .+.++.+++ +||+||||+++| +|.|+.
T Consensus 86 ~~~~p~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~v~s~~--------~l~~~~~~~-g~P~vlKp~~~g~~g~Gv~ 153 (372)
T PRK06019 86 VPVPPGPDALAIAQDRLTEKQF---LDKLGIPVAPFAVVDSAE--------DLEAALADL-GLPAVLKTRRGGYDGKGQW 153 (372)
T ss_pred CeeCcCHHHHHHhcCHHHHHHH---HHHCCCCCCCceEeCCHH--------HHHHHHHHc-CCcEEEEeCCCCcCCCCeE
Confidence 3468999999999999999999 899999999999887532 244556678 699999999976 799999
Q ss_pred EeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEE
Q 002207 741 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEI 820 (953)
Q Consensus 741 ~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Ei 820 (953)
++++.+|++. +++... ...+|||+||++. +|+
T Consensus 154 ~v~~~~el~~---a~~~~~---------------------~~~~ivEe~I~~~------------------------~E~ 185 (372)
T PRK06019 154 VIRSAEDLEA---AWALLG---------------------SVPCILEEFVPFE------------------------REV 185 (372)
T ss_pred EECCHHHHHH---HHHhcC---------------------CCCEEEEecCCCC------------------------eEE
Confidence 9999999875 343320 4679999999963 499
Q ss_pred EEEEEcC-CCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q 002207 821 TVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAF 899 (953)
Q Consensus 821 tv~vl~~-~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~ 899 (953)
++.++.+ +|... +.|..+.....++++ ..+.|+. +++++.+++++++.+++++||+.|+.+||||
T Consensus 186 sv~~~~~~~G~~~-~~p~~e~~~~~gi~~----------~~~~pa~---~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff 251 (372)
T PRK06019 186 SVIVARGRDGEVV-FYPLVENVHRNGILR----------TSIAPAR---ISAELQAQAEEIASRIAEELDYVGVLAVEFF 251 (372)
T ss_pred EEEEEECCCCCEE-EeCCcccEEeCCEEE----------EEECCCC---CCHHHHHHHHHHHHHHHHHcCccceeEEEEE
Confidence 9988875 44443 334333222222322 2356775 6889999999999999999999999999999
Q ss_pred EEcCCCcEEEEeeCCCCCCC
Q 002207 900 VNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 900 v~~~~g~~~viEINt~PGlt 919 (953)
++. +|++|||||||+|+-+
T Consensus 252 ~~~-dg~~~v~EinpR~~~s 270 (372)
T PRK06019 252 VTG-DGELLVNEIAPRPHNS 270 (372)
T ss_pred EcC-CCeEEEEEecCCccCc
Confidence 985 6889999999999854
No 91
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.87 E-value=1.9e-20 Score=236.24 Aligned_cols=231 Identities=18% Similarity=0.261 Sum_probs=171.5
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCc
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKE 703 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~ 703 (953)
+..+..++ ..+|+|+|. +|..+|+..++..|+..|++++|+++.++.+|.||..++++ ++++|||+|++......
T Consensus 64 d~Ii~iak~~~iDaI~PG-yGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~l---a~~~GVPvpp~t~~~v~ 139 (1143)
T TIGR01235 64 DEIIRVAKLNGVDAIHPG-YGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNL---AIKAGVPVVPGTDGPPE 139 (1143)
T ss_pred HHHHHHHHHhCCCEEEEC-CCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcccCcC
Confidence 44454433 468999996 68889999999999999999999999999999999999999 99999999997532111
Q ss_pred cccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCe
Q 002207 704 DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 783 (953)
Q Consensus 704 ~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 783 (953)
+ .+.+.++.+++ +||+||||+.+|+|+|+.+|++.+||.++ ++.+..... .+. .++.
T Consensus 140 ~------~eea~~~ae~i-GyPvIVKP~~GGGGrG~riV~~~eEL~~a---~~~a~~ea~-----~~f--------g~~~ 196 (1143)
T TIGR01235 140 T------MEEVLDFAAAI-GYPVIIKASWGGGGRGMRVVRSEADVADA---FQRAKSEAK-----AAF--------GNDE 196 (1143)
T ss_pred C------HHHHHHHHHHc-CCCEEEEECCCCCCCccEEeCCHHHHHHH---HHHHHHHHH-----Hhc--------CCCc
Confidence 1 12244556788 69999999999999999999999999864 443322100 000 1467
Q ss_pred EEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-CceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 784 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~-~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
++||+||+|. +|++|.++++.. ....+.+. + ......+ .......
T Consensus 197 vlIEefI~g~------------------------reIeVqVlgD~~G~vv~l~eR-------d-csvqrr~--qk~ie~a 242 (1143)
T TIGR01235 197 VYVEKLIERP------------------------RHIEVQLLGDKHGNVVHLFER-------D-CSVQRRH--QKVVEVA 242 (1143)
T ss_pred EEEEEcCCCC------------------------eEEEEEEEEeCCCCEEEEEec-------c-ccccccC--ceEEEEe
Confidence 9999999975 599999998753 32222110 0 0111001 1122345
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
|++ .+++++.++|++.|.+++++||+.|+++|||+++. +|++|||||||+++.+
T Consensus 243 Pa~--~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 243 PAP--YLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN-DGKFYFIEVNPRIQVE 296 (1143)
T ss_pred CCC--CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC-CCcEEEEEeecCCCcc
Confidence 654 36899999999999999999999999999999985 6899999999999765
No 92
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.87 E-value=1e-20 Score=207.42 Aligned_cols=214 Identities=20% Similarity=0.236 Sum_probs=152.7
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
.+|+||+.. ........+...|+..|+|++++ ..++.+|+||..++++ |+++|||+|++..+.+.+ .
T Consensus 48 ~~d~v~~r~-~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~dK~~~~~~---l~~~gi~~P~t~~~~~~~--------~ 114 (277)
T TIGR00768 48 ELDVVIVRI-VSMFRGLAVARYLESLGVPVINS-SDAILNAGDKFLTSQL---LAKAGLPQPRTGLAGSPE--------E 114 (277)
T ss_pred CCCEEEEec-hhHhhHHHHHHHHHHCCCeeeCC-HHHHHHHhhHHHHHHH---HHHCCCCCCCEEEeCCHH--------H
Confidence 369999988 22223447889999999999876 7899999999999999 899999999998876432 2
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
+.++.+++ +||+||||..+++|.||.++++.+++..+.+.+.... .....+|||+||+|.
T Consensus 115 ~~~~~~~~-~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~-------------------~~~~~~lvQe~I~~~ 174 (277)
T TIGR00768 115 ALKLIEEI-GFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLN-------------------GPQNLFYVQEYIKKP 174 (277)
T ss_pred HHHHHHhc-CCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhc-------------------ccCCcEEEEeeecCC
Confidence 34456678 6999999999999999999999998876433322110 012579999999975
Q ss_pred ccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHH
Q 002207 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873 (953)
Q Consensus 794 ~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~ 873 (953)
+ | .++++.++++. . ...+......++ ...+..|.. ..|.+ ++
T Consensus 175 ~------------------~----~~~rv~v~~~~--~---~~~~~r~~~~~~---~~n~~~g~~--~~~~~---l~--- 216 (277)
T TIGR00768 175 G------------------G----RDIRVFVVGDE--V---IAAIYRITSGHW---RTNLARGGK--AEPCP---LT--- 216 (277)
T ss_pred C------------------C----ceEEEEEECCE--E---EEEEEEcCCCch---hhhhhcCCe--eeecC---CC---
Confidence 1 1 27777776542 2 111211112222 222222222 23433 33
Q ss_pred HHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 874 ~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
+++++.+++++++||+ ++++|||+++. +|++||+|||++||++..
T Consensus 217 -~~~~~~a~~~~~~l~~-~~~~vD~~~~~-~g~~~viEiN~~p~~~~~ 261 (277)
T TIGR00768 217 -EEIEELAIKAAKALGL-DVVGIDLLESE-DRGLLVNEVNPNPEFKNS 261 (277)
T ss_pred -HHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCeEEEEEcCCcchhhh
Confidence 3678899999999999 79999999985 689999999999998764
No 93
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.86 E-value=2.6e-20 Score=204.97 Aligned_cols=213 Identities=23% Similarity=0.269 Sum_probs=149.4
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
.+|+||+...+ .+....++.+||.+|+|++++ +.++.+|+||..++++ |+++|||+|++..+.+.+ .
T Consensus 47 ~~d~v~~r~~~-~~~~~~~~~~le~~g~~~~n~-~~~~~~~~dK~~~~~~---l~~~gip~P~t~~~~~~~--------~ 113 (280)
T TIGR02144 47 DVDVAIIRCVS-QSRALYSARLLEALGVPVINS-SHVIEACGDKIFTYLK---LAKAGVPTPRTYLAFDRE--------A 113 (280)
T ss_pred CCCEEEEcCcc-hhhHHHHHHHHHHCCCcEECc-HHHHHHHhhHHHHHHH---HHHCCcCCCCeEeeCCHH--------H
Confidence 46999986311 233457889999999999885 6899999999999998 899999999998875422 1
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
+.++.+.+ +||+||||..+++|.||.++++.+++..+.+... .+.. ..+..+|+|+||+|.
T Consensus 114 ~~~~~~~~-~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~-~~~~-----------------~~~~~~ivQefI~~~ 174 (280)
T TIGR02144 114 ALKLAEAL-GYPVVLKPVIGSWGRLVALIRDKDELESLLEHKE-VLGG-----------------SQHKLFYIQEYINKP 174 (280)
T ss_pred HHHHHHHc-CCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHH-hhcC-----------------CcCCeEEEEcccCCC
Confidence 23345678 6999999999999999999999988875332211 1100 014579999999853
Q ss_pred ccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHH
Q 002207 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 873 (953)
Q Consensus 794 ~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~ 873 (953)
| +|+++.++++. .. ..+ ..... +|......|. ...|.+ +++
T Consensus 175 -------------------~----~d~~v~vig~~--~~---~~~-~r~~~---~~~~~~~~g~--~~~~~~---~~~-- 215 (280)
T TIGR02144 175 -------------------G----RDIRVFVIGDE--AI---AAI-YRYSN---HWRTNTARGG--KAEPCP---LDE-- 215 (280)
T ss_pred -------------------C----CceEEEEECCE--EE---EEE-EEcCC---chhhhhhcCC--ceeccC---CCH--
Confidence 1 38888888653 11 111 11111 1111111121 234443 343
Q ss_pred HHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 874 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 874 ~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++++.|++++++||+ ++++|||+++. +|++||+|||+.||++..
T Consensus 216 --~~~~~a~~~~~~lg~-~~~~vD~~~~~-~g~~~v~EvN~~p~~~~~ 259 (280)
T TIGR02144 216 --EVEELAVKAAEAVGG-GVVAIDIFESK-ERGLLVNEVNHVPEFKNS 259 (280)
T ss_pred --HHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCEEEEEEeCCcchhhh
Confidence 567899999999997 59999999984 678999999999999864
No 94
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.86 E-value=6e-20 Score=234.13 Aligned_cols=224 Identities=16% Similarity=0.175 Sum_probs=168.8
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE-EEeCccccCCch
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD-VRRKEDLLKTPI 710 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~-~v~~~~~~~~~~ 710 (953)
+..+|.|+|.. |...|+..++..|+.+|++++|+++.++.+|.||..+|++ |+++|||+|++. .+.+.+
T Consensus 71 ~~~idaIiPG~-gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~l---l~~~GVPt~p~~~lv~s~d------ 140 (1201)
T TIGR02712 71 KTGAQAIHPGY-GFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTAREL---AEAAGVPLLPGTGLLSSLD------ 140 (1201)
T ss_pred HHCCCEEEeCC-cccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHH---HHHCCCCCCCceeecCCHH------
Confidence 34678888865 6788999999999999999999999999999999999999 899999998854 344321
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.+..+++ +||+||||..+++|+||.+|++.+||.++.+.+....... ..+..++||+||
T Consensus 141 --ea~~~a~~i-gyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~----------------f~~~~vlVEefI 201 (1201)
T TIGR02712 141 --EALEAAKEI-GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESF----------------FGDAGVFLERFV 201 (1201)
T ss_pred --HHHHHHHhc-CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHh----------------cCCCcEEEEecC
Confidence 233445678 6999999999999999999999999987544443322110 013569999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+|. +|+++.+++++...+..++..... +.... ......+|++. ++
T Consensus 202 ~g~------------------------~eveV~v~~Dg~g~vv~lg~rd~s----~qr~~-----~k~vee~Pap~--l~ 246 (1201)
T TIGR02712 202 ENA------------------------RHVEVQIFGDGKGKVVALGERDCS----LQRRN-----QKVVEETPAPN--LP 246 (1201)
T ss_pred CCC------------------------EEEEEEEEECCCCeEEEeeEEEee----eEecC-----ccEEEEcCCCC--CC
Confidence 964 499999998754332222221100 11111 11223466653 78
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++.+++++.+.+++++|++.|+++|||+++.++|++|||||||+++.+
T Consensus 247 ~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 247 PETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVE 295 (1201)
T ss_pred HHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcc
Confidence 9999999999999999999999999999998645889999999999765
No 95
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.86 E-value=1.9e-19 Score=207.91 Aligned_cols=214 Identities=23% Similarity=0.255 Sum_probs=154.4
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHH-HHCCCCccCeEEEeCccccCCchh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l-~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
+.+|+|++...... . ..+. .++..|+|. .++..+..+|+||..+|++ + +++|||+|+|..+++.+
T Consensus 74 ~~id~vi~~~e~~~-~-~~~~-~l~~~g~~~-~~~~~a~~~~~dK~~~k~~---l~~~~gip~p~~~~~~s~~------- 139 (395)
T PRK09288 74 EKPDYIVPEIEAIA-T-DALV-ELEKEGFNV-VPTARATRLTMNREGIRRL---AAEELGLPTSPYRFADSLE------- 139 (395)
T ss_pred hCCCEEEEeeCcCC-H-HHHH-HHHhcCCee-CCCHHHHHHHhCHHHHHHH---HHHhCCCCCCCceEECCHH-------
Confidence 45788888653211 1 1233 456679885 4788999999999999998 6 57999999999887533
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++..++ +||+||||..+++|.||++|++.+|+.. +++.+.... + .....+||||||+
T Consensus 140 -~l~~~~~~~-g~P~VvKP~~g~~s~Gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~lvEefi~ 199 (395)
T PRK09288 140 -ELRAAVEEI-GYPCVVKPVMSSSGKGQSVVRSPEDIEK---AWEYAQEGG------R---------GGAGRVIVEEFID 199 (395)
T ss_pred -HHHHHHHhc-CCCEEEEeCCCcCCCCeEEECCHHHHHH---HHHHHHhhc------c---------ccCCCEEEEEecC
Confidence 234455678 6999999999999999999999999886 455443220 0 0135799999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-CceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~-~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+. .|+++.++.+++ ......+.......+ + ....+.|++ ++
T Consensus 200 ~~------------------------~E~sv~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~p~~---l~ 241 (395)
T PRK09288 200 FD------------------------YEITLLTVRAVDGGTHFCAPIGHRQEDG---D--------YRESWQPQP---MS 241 (395)
T ss_pred CC------------------------EEEEEEEEEcCCCCEEEecCcccEEECC---E--------EEEEECCCC---CC
Confidence 43 399999887655 333332221111000 1 112245665 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+++.+++++++++++++||..|+.++|||++. +++||+|||++||-+.
T Consensus 242 ~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~--~~~~viEinpR~~~~~ 289 (395)
T PRK09288 242 PAALEEAQEIAKKVTDALGGRGLFGVELFVKG--DEVYFSEVSPRPHDTG 289 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC--CeEEEEEecCCCCCCc
Confidence 89999999999999999999999999999983 4799999999998653
No 96
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.85 E-value=1.6e-20 Score=196.83 Aligned_cols=199 Identities=20% Similarity=0.195 Sum_probs=140.3
Q ss_pred cHHHHHHHHHHCCCCCCCeEEe--cCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhH
Q 002207 205 DKYDASLEMSKQGFITVPSFLL--QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~ 282 (953)
||..++++++++|+|++|+... .+. +++.++.+ +++||++|||..+|++.|+.+|+|.+++.+......
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~----eea~~~a~-----~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~ 71 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSV----EEALEFAE-----EIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQ 71 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSH----HHHHHHHH-----HH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCH----HHHHHHHH-----hcCCceEEeecccccccccccccchhhhhhhhhhcc
Confidence 8999999999999999998765 332 23334433 268899999999999999999999999876665543
Q ss_pred hcC----CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEc
Q 002207 283 LEG----IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 358 (953)
Q Consensus 283 ~~~----~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~ 358 (953)
... .+..++||+|+.|++|+++.+++|+.|+ .+. .++.+.. ... + .+++....
T Consensus 72 ~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn---~~~--~~~~e~~----------------~~~-h-s~dsi~~~ 128 (211)
T PF02786_consen 72 RESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGN---VVH--LGERECS----------------EQR-H-SQDSIEEA 128 (211)
T ss_dssp HHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSE---EEE--EEEEEEE----------------EEE-T-TEEEEEEE
T ss_pred ccCccccccceEEEeeehhhhhhhhhhhhhccccc---eee--eeeeccc----------------ccc-c-cccceeEe
Confidence 322 3678999999999899999999987654 222 2333211 011 1 22355667
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHH
Q 002207 359 PPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQA 437 (953)
Q Consensus 359 Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a 437 (953)
|+. |++++.++|++.|.+++++||+.|.++|+|.+. ..+|++||+|+||+..-+ .|...
T Consensus 129 P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~----------------~~~~~~y~lEvNpR~~~~----~p~~e 188 (211)
T PF02786_consen 129 PAQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVD----------------PDDGEFYFLEVNPRLQRE----HPVTE 188 (211)
T ss_dssp S-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE----------------TTTTEEEEEEEESS--TT----HHHHH
T ss_pred eccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEc----------------cCccceeeecccCCCCCc----chHHH
Confidence 875 999999999999999999999999999999873 137899999999876633 37777
Q ss_pred HHhCCCHHHHHHHHHHHHhhh
Q 002207 438 SKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 438 ~~~G~s~~~ll~~li~~a~~r 458 (953)
+.+|++ |+...++.|+..
T Consensus 189 ~~tg~d---lv~~~~~ia~G~ 206 (211)
T PF02786_consen 189 KVTGYD---LVRVQIRIALGE 206 (211)
T ss_dssp HHHT-----HHHHHHHHHTT-
T ss_pred HHHCCC---HHHHHHHHHCCC
Confidence 889996 566666666554
No 97
>PRK06849 hypothetical protein; Provisional
Probab=99.85 E-value=2.9e-20 Score=214.29 Aligned_cols=271 Identities=15% Similarity=0.095 Sum_probs=173.0
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeee-cc--cccccC-CCC-Ccccccccccc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAI-SS--AQVYSN-TPA-DFDFKLESLAQ 148 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~-~~--~~~~~~-~~~-~~~~~~~~~~~ 148 (953)
|+.+|||+|+.|+... |.+++++|.+.|++|+.++.++. ++.. +. ...+.. .+. +.+.+++
T Consensus 1 ~~~~~~VLI~G~~~~~--------~l~iar~l~~~G~~Vi~~d~~~~--~~~~~s~~~d~~~~~p~p~~d~~~~~~---- 66 (389)
T PRK06849 1 MNTKKTVLITGARAPA--------ALELARLFHNAGHTVILADSLKY--PLSRFSRAVDGFYTIPSPRWDPDAYIQ---- 66 (389)
T ss_pred CCCCCEEEEeCCCcHH--------HHHHHHHHHHCCCEEEEEeCCch--HHHHHHHhhhheEEeCCCCCCHHHHHH----
Confidence 4567899999776653 88999999999999987765432 1100 00 000000 000 0000000
Q ss_pred ccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecC
Q 002207 149 GFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG 228 (953)
Q Consensus 149 ~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~ 228 (953)
.+.++. ..+++|+|+|+.... .......+.|+. ++.+.+++..+...+.||..++++++++|||+|+++.+.+
T Consensus 67 ---~L~~i~--~~~~id~vIP~~e~~-~~~a~~~~~l~~-~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~ 139 (389)
T PRK06849 67 ---ALLSIV--QRENIDLLIPTCEEV-FYLSHAKEELSA-YCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITD 139 (389)
T ss_pred ---HHHHHH--HHcCCCEEEECChHH-HhHHhhhhhhcC-CcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCC
Confidence 011111 134799999998643 223333344443 4667789999999999999999999999999999999876
Q ss_pred CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.+. +..+.. +..+||+|+||..+++|.|+.++.+.+++. .. ....+..+||||||+| .|+.+..+.
T Consensus 140 ~~~----l~~~~~----~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~-~~----~~~~~~~~ivQe~I~G-~e~~~~~~~ 205 (389)
T PRK06849 140 PEA----IRNFMF----KTPHTPYVLKPIYSRFVRRVDLLPKEAALK-EL----PISKDNPWVMQEFIQG-KEYCSYSIV 205 (389)
T ss_pred HHH----HHHHhh----cCCCCcEEEEeCcccCCCeEEEecCHHHhc-cc----ccCCCCCeEEEEEecC-CeEEEEEEE
Confidence 432 222211 113789999999999999999998854422 11 1122346999999998 898777764
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCc-eEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ-VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
. +++.++... |...|..++. .....|. . ..+|++.+.+++++||++|.+
T Consensus 206 ~----~G~v~~~~~---------------------~~~~~~~~~~~~~~~~~~--~---~~~l~~~~~~~~~~l~~~G~~ 255 (389)
T PRK06849 206 R----SGELRAHSC---------------------YKPEYCAGSGAQIAFQPI--N---HPRIEEFVTHFVKELNYTGQI 255 (389)
T ss_pred E----CCEEEEEEE---------------------eeccccCCCCceeEeEEC--C---cHHHHHHHHHHHHhcCceeEE
Confidence 2 222222111 1112221111 1122222 1 246789999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
.+||++ +++|++|++||||+++
T Consensus 256 ~~df~~-----------------~~~g~~~~iEiNpR~~ 277 (389)
T PRK06849 256 SFDFIE-----------------TENGDAYPIECNPRTT 277 (389)
T ss_pred EEEEEE-----------------CCCCCEEEEEecCCCC
Confidence 999975 5689999999999887
No 98
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.84 E-value=1.9e-19 Score=210.66 Aligned_cols=249 Identities=14% Similarity=0.106 Sum_probs=167.3
Q ss_pred hcCCcEEEEecCCCCCCccHH---HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCcc-CeEEEeCccccC
Q 002207 632 KENQATVFIAVHGGIGEDGTL---QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTI-NKDVRRKEDLLK 707 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~i---q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp-~~~~v~~~~~~~ 707 (953)
++.+|.|++ .+|++.+ ...|+.+|+|+.|++..++++|+||..+|++ |+++||||| .+..+++.+
T Consensus 67 ~~~id~Vi~-----g~E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~---l~~~gIpt~~~~~~~~~~~--- 135 (486)
T PRK05784 67 EVNPDLVVI-----GPEEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWAREL---MWKYSIPGRLRYKVFYDVE--- 135 (486)
T ss_pred HhCCCEEEE-----CCchHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHH---HHHcCcCCCccceEeCCHH---
Confidence 356898887 2577754 4668899999999999999999999999999 899999997 566665422
Q ss_pred CchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccc-----HHHHH-HHHHHHHhhCCCCCcccccccccCCCCCC
Q 002207 708 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED-----LTVYV-KALEECLLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 708 ~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~e-----L~~~~-~al~~a~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
+ +.++.+.+ +|+||||..+++|.||.+|++.++ +.+.. +++++++... +.+. ...
T Consensus 136 ----e-a~~~~~~~--~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~--~~~g----------~~~ 196 (486)
T PRK05784 136 ----E-AAKFIEYG--GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGS--AYYK----------DVE 196 (486)
T ss_pred ----H-HHHHHhhc--CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhH--hhcc----------CCC
Confidence 1 22333444 599999999999999999999874 33322 4444443110 0000 124
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeE
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~ 861 (953)
..+||||||+|. |++|.++.+++..+ ..|..+ ....+++.+...+.|....+
T Consensus 197 ~~VlIEEfL~G~-------------------------E~SV~al~dG~~~~-~l~~~q--d~k~~~~~d~gpntGgmg~~ 248 (486)
T PRK05784 197 PKILVEEKVDGV-------------------------EYTLQVLTDGETVI-PLPLAQ--DYPHAYEDGIGPETGGMGSI 248 (486)
T ss_pred CeEEEEEccCCe-------------------------EEEEEEEECCCeEE-EeeeeE--eecceecCCCCCCCCCCccc
Confidence 689999999997 99999998654332 233322 12345555444444444445
Q ss_pred cC----CCCCCCCHHHHHHHHHHHHHHHHHcC----C--cceEEEEEEEE-cCCCcEEEEeeCCCCCCCCCchHHHHHHh
Q 002207 862 TP----PPASIMSTEALDKCKQRIELIANALQ----L--EGFSRIDAFVN-VDNGEVLIIEVNTVPGMTPSTVLIHQALS 930 (953)
Q Consensus 862 ~P----~~~~~l~~~~~~~i~~~a~~~~~aLg----~--~G~ariDf~v~-~~~g~~~viEINt~PGlt~~S~l~~~a~~ 930 (953)
.| .|. ++++..+++.++++.++++|+ + +|+.+++|+++ . +.++|||+|.+.|=.....+.+...
T Consensus 249 ~p~~~~~P~--~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~--~GP~vIE~n~R~Gdpe~~~llp~l~- 323 (486)
T PRK05784 249 SGPGELLPF--INEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTEL--WGPTVIEYYSRFGDPEASNIIPRIE- 323 (486)
T ss_pred CCccccCCC--CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecC--CCcEEEEEecccCCchHHHHHHhcc-
Confidence 66 442 467777777777777776664 3 49999999997 4 3499999999999443433333321
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 002207 931 EQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 931 ~~~~~yp~~l~~~li~~a~~ 950 (953)
.+|++.++..+..
T Consensus 324 -------~dl~~~~~~~~~g 336 (486)
T PRK05784 324 -------SDFGELFELAATG 336 (486)
T ss_pred -------CCHHHHHHHHHcC
Confidence 2666666666553
No 99
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.84 E-value=2.7e-19 Score=207.91 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=164.3
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE-EEeCccccCCch
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD-VRRKEDLLKTPI 710 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~-~v~~~~~~~~~~ 710 (953)
++.+|.|++...+.... .+...|+..|+|..|++..++.+|.||.+||++ |+++|||||+++ .+.+.+
T Consensus 63 ~~~id~Vi~~~d~~l~~--~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~---l~~~gIptp~~~~~~~~~~------ 131 (435)
T PRK06395 63 KNNVDIVFVGPDPVLAT--PLVNNLLKRGIKVASPTMEAAMIETSKMFMRYL---MERHNIPGNINFNACFSEK------ 131 (435)
T ss_pred HhCCCEEEECCChHHHH--HHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHH---HHHCCcCCCcccceeCChH------
Confidence 35689999875443322 334456678999999999999999999999999 899999998554 443321
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc-ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA-EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~-~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+ ......++ +||+||||..+.+|.||.++++. ++++++..+....+. ....+|||||
T Consensus 132 -e-~~~~~~~~-~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~-------------------~~~~viIEEf 189 (435)
T PRK06395 132 -D-AARDYITS-MKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILD-------------------RDGVVLIEKK 189 (435)
T ss_pred -H-HHHHHHhh-CCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhC-------------------CCCcEEEEee
Confidence 1 12223456 69999999999999999999643 344443233322211 1467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc----CCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT----PPP 865 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~----P~~ 865 (953)
|+|. |+++.++.+++. +..+|..+. ....++-+.-.+.|....+. |.+
T Consensus 190 l~G~-------------------------E~Svd~~~dg~~-~~~l~~~~d--~~r~~~~d~gp~tGgmG~~s~~~~~~p 241 (435)
T PRK06395 190 MTGE-------------------------EFSLQAFSDGKH-LSFMPIVQD--YKRAYEGDHGPNTGGMGSISDRDFSLP 241 (435)
T ss_pred cCCc-------------------------eEEEEEEEcCCe-EEEecccce--eeecccCCCCCccCCCccccCCCCCCC
Confidence 9997 999999986544 333343321 11122222122223223333 333
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-----CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHH
Q 002207 866 ASIMSTEALDKCKQRIELIANALQ-----LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 940 (953)
Q Consensus 866 ~~~l~~~~~~~i~~~a~~~~~aLg-----~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l 940 (953)
.++++..+++++.+++++++|+ .+|+..++|+++. +.+||||+|+++|=...-.+-+ +.+.||
T Consensus 242 --~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~--~gp~ViE~n~R~gdpe~~~il~--------~l~~d~ 309 (435)
T PRK06395 242 --FLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP--NGVKVIEINARFADPEGINVLY--------LLKSDF 309 (435)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC--CCcEEEEEeCCCCCccHHhhhh--------hcccCH
Confidence 2789999999999999999999 5788889999983 4599999999999553322222 123466
Q ss_pred HHHHHHHHh
Q 002207 941 FRKVLDLGS 949 (953)
Q Consensus 941 ~~~li~~a~ 949 (953)
++.++..+.
T Consensus 310 ~~~~~~~~~ 318 (435)
T PRK06395 310 VETLHQIYS 318 (435)
T ss_pred HHHHHHHhc
Confidence 666665554
No 100
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.84 E-value=4.5e-19 Score=224.94 Aligned_cols=250 Identities=18% Similarity=0.252 Sum_probs=177.6
Q ss_pred HHHHHHh-hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--Ee
Q 002207 625 NEWIKLA-KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--RR 701 (953)
Q Consensus 625 ~~~~~~~-~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v~ 701 (953)
+..++.+ +..+|.|+|. .|...|+..+...++.+|++++|+++.+..+|.||..++++ ++++|||+|++.. +.
T Consensus 68 d~Ii~iAk~~~iDaI~Pg-yGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~---l~~~GVPv~P~~~~~v~ 143 (1146)
T PRK12999 68 DEIIRVAKQAGVDAIHPG-YGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNA---AIKAGVPVIPGSEGPID 143 (1146)
T ss_pred HHHHHHHHHhCCCEEEeC-CCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcccCCC
Confidence 3444443 3467889885 47788988889999999999999999999999999999999 9999999988764 33
Q ss_pred CccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCC
Q 002207 702 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
+. +.+.++.+++ +||+||||+.+|+|.||.+|++.+||.++ ++.+..... .+. .+
T Consensus 144 s~--------eea~~~a~~i-GyPvVVKP~~GgGGrGv~vV~~~eEL~~a---~~~a~~ea~-----~~f--------g~ 198 (1146)
T PRK12999 144 DI--------EEALEFAEEI-GYPIMLKASAGGGGRGMRIVRSEEELEEA---FERAKREAK-----AAF--------GN 198 (1146)
T ss_pred CH--------HHHHHHHHHh-CCCEEEEECCCCCCCCeEEeCCHHHHHHH---HHHHHHHHH-----hhc--------CC
Confidence 21 2244556788 69999999999999999999999998863 444332100 000 14
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCcee
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~ 860 (953)
+.++||+||+|. +|+++.++++. |....+... . .+....+ .....
T Consensus 199 ~~vlVEefI~g~------------------------~~ieVqvl~D~~G~vv~l~er-----d---csvqrr~--qk~ie 244 (1146)
T PRK12999 199 DEVYLEKYVENP------------------------RHIEVQILGDKHGNVVHLYER-----D---CSVQRRH--QKVVE 244 (1146)
T ss_pred CcEEEecCCCCC------------------------eEEEEEEEEECCCCEEEEEcc-----c---cceeecC--ccEEE
Confidence 679999999985 48999988864 332222110 0 0000001 11122
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHH
Q 002207 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 940 (953)
Q Consensus 861 ~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l 940 (953)
..|+. .+++++.+++++.+.++++++|+.|.+++||+++. +|++||+||||+++.+.. +..++. . .++
T Consensus 245 ~aP~~--~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~-dg~~yfIEINpRlqveh~--vte~~t-----G--vDl 312 (1146)
T PRK12999 245 IAPAP--GLSEELRERICEAAVKLARAVGYVNAGTVEFLVDA-DGNFYFIEVNPRIQVEHT--VTEEVT-----G--IDI 312 (1146)
T ss_pred EcCCC--CCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCCEEEEEEECCCCCcch--HHHHHh-----C--cCH
Confidence 45553 37899999999999999999999999999999985 578999999998875421 222221 1 256
Q ss_pred HHHHHHHHh
Q 002207 941 FRKVLDLGS 949 (953)
Q Consensus 941 ~~~li~~a~ 949 (953)
+...|++|+
T Consensus 313 v~~~iriA~ 321 (1146)
T PRK12999 313 VQSQILIAE 321 (1146)
T ss_pred HHHHHHHHC
Confidence 666666654
No 101
>PRK07206 hypothetical protein; Provisional
Probab=99.84 E-value=3.8e-19 Score=206.89 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=154.8
Q ss_pred hcCCcEEEEecCCCCCCcc--HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDG--TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg--~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+..+|.|++.. |.. ..+.+.+.+|+|+ |+++.++..|.||..|+++ |+++|||+|++..+.+.+
T Consensus 68 ~~~~d~vi~~~-----e~~~~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~---l~~~gi~~p~~~~~~~~~----- 133 (416)
T PRK07206 68 KLGPEAIIAGA-----ESGVELADRLAEILTPQY-SNDPALSSARRNKAEMINA---LAEAGLPAARQINTADWE----- 133 (416)
T ss_pred HcCCCEEEECC-----CccHHHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHH---HHHcCCCcccEEecCCHH-----
Confidence 45689988842 332 4466778899985 7778888999999999999 999999999998876432
Q ss_pred hhhHHHHHHhhcCCC---cEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEE
Q 002207 710 IVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~---PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlV 786 (953)
.+.++.+.+ +| |+||||..+++|.||.+|++.+||.. +++++.... +.+. .....+||
T Consensus 134 ---e~~~~~~~~-g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~---~~~~~~~~~--~~~~----------~~~~~~lv 194 (416)
T PRK07206 134 ---EAEAWLREN-GLIDRPVVIKPLESAGSDGVFICPAKGDWKH---AFNAILGKA--NKLG----------LVNETVLV 194 (416)
T ss_pred ---HHHHHHHhc-CCCCCCEEEeCCCCCCCCCEEEeCCHHHHHH---HHHHHHhcc--ccCC----------CCCCeEEE
Confidence 234455666 57 99999999999999999999999875 455543220 0000 11468999
Q ss_pred eccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCc----eeEc
Q 002207 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG----INLT 862 (953)
Q Consensus 787 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~----~~~~ 862 (953)
||||+|. |+++.++..+|..... ........ . ...+.. ....
T Consensus 195 Ee~i~G~-------------------------E~sv~~~~~~G~~~~~-~~~~~~~~-~-------~~~~~~~~~~~~~~ 240 (416)
T PRK07206 195 QEYLIGT-------------------------EYVVNFVSLDGNHLVT-EIVRYHKT-S-------LNSGSTVYDYDEFL 240 (416)
T ss_pred EEccccE-------------------------EEEEEEEEECCEEEEE-EeEEeeec-c-------cCCCCceecccccC
Confidence 9999997 8888888755553221 11111000 0 001111 1122
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHH
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLE-GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~-G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~ 926 (953)
|. +.+..+++.+.+.+++++||+. |++++||+++. + .++++|||++||-+....+.+
T Consensus 241 p~-----~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~-~-g~~liEin~R~~G~~~~~~~~ 298 (416)
T PRK07206 241 DY-----SEPEYQELVDYTKQALDALGIKNGPAHAEVMLTA-D-GPRLIEIGARLDGGLHPDVAR 298 (416)
T ss_pred Cc-----cHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC-C-CCEEEEECCccCCCCccchhh
Confidence 32 4667889999999999999995 99999999984 3 489999999998665443333
No 102
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.83 E-value=6.5e-19 Score=198.25 Aligned_cols=354 Identities=19% Similarity=0.203 Sum_probs=247.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc-c--ccccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES-L--AQGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~ 154 (953)
.||.|---| || +-.|.+++-+.+...+.||-..+--..+ .-.+|-...+-. + ......+.
T Consensus 34 ~kvlVANRg-----EI----aIRvFRa~tEL~~~tvAiYseqD~~sMH--------RqKADEaY~iGk~l~PV~AYL~id 96 (1176)
T KOG0369|consen 34 NKVLVANRG-----EI----AIRVFRAATELSMRTVAIYSEQDRLSMH--------RQKADEAYLIGKGLPPVGAYLAID 96 (1176)
T ss_pred ceeEEecCC-----cc----hhHHHHHHhhhcceEEEEEeccchhhhh--------hhccccceecccCCCchhhhhhHH
Confidence 477776533 34 6678999999999888887544311100 001111111100 0 01111223
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
++++. .+.++|+|-|.. |...|+..+...+..+||.|+|++++......||..++.+.-++|+|+.|..--. -...
T Consensus 97 eii~iak~~~vdavHPGY-GFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgP--itt~ 173 (1176)
T KOG0369|consen 97 EIISIAKKHNVDAVHPGY-GFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGP--ITTV 173 (1176)
T ss_pred HHHHHHHHcCCCeecCCc-cccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCC--cccH
Confidence 33332 345789887765 5566888999999999999999999999999999999999999999998863211 1112
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh----cCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~----~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
.+..++.+ +.++|+|+|.+.||++.|+.+|++.+++.+...+..+ .-.+..++||+||+-.+.++|.++++
T Consensus 174 ~EA~eF~k-----~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD 248 (1176)
T KOG0369|consen 174 EEALEFVK-----EYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGD 248 (1176)
T ss_pred HHHHHHHH-----hcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecc
Confidence 33444443 3677999999999999999999988776544443322 12367899999998779999999987
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
..||- +-+. + .-.+.+..+ +++..+.|+. +|++++++|-.-|.++++..|++..+.
T Consensus 249 ~~GNv---vHLy----E-------------RDCSvQRRH---QKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGT 305 (1176)
T KOG0369|consen 249 KHGNV---VHLY----E-------------RDCSVQRRH---QKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGT 305 (1176)
T ss_pred cCCCE---EEEe----e-------------cccchhhhh---cceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCc
Confidence 76652 1110 0 011122222 3466778886 999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh-CCCCCCCCC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR-FPNLASYNS 467 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r-~~~~~~~~~ 467 (953)
++|.+ |..|+.||||||++-..+.+- .-+-+|+ +|+...|+.|-.+ .+.+-.-.+
T Consensus 306 vEFLv-----------------D~~g~hYFIEvN~RlQVEHTv----TEEITgv---DlV~aQi~vAeG~tLp~lgl~Qd 361 (1176)
T KOG0369|consen 306 VEFLV-----------------DQKGRHYFIEVNPRLQVEHTV----TEEITGV---DLVQAQIHVAEGASLPDLGLTQD 361 (1176)
T ss_pred eEEEE-----------------ccCCCEEEEEecCceeeeeee----eeeeccc---hhhhhhhhhhcCCCccccccccc
Confidence 99976 678999999999988776542 1123466 6888888888765 233321111
Q ss_pred ----cceecccccccCCCccccccCCCceEEEEecCCCcc
Q 002207 468 ----VSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTS 503 (953)
Q Consensus 468 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~ 503 (953)
.+.+|+||...+||...|++.++++.|+--.||...
T Consensus 362 kI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGi 401 (1176)
T KOG0369|consen 362 KITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGI 401 (1176)
T ss_pred ceeecceEEEEEEeccCccccCCCCCceEEEEEeCCCceE
Confidence 368999999999999999999999999887777764
No 103
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.83 E-value=5.4e-19 Score=198.86 Aligned_cols=202 Identities=25% Similarity=0.266 Sum_probs=148.4
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
+..+|++++...+...-.......|+..|+++++++..+..++.||..|+++ |+++|||+|++..+.+.+
T Consensus 67 ~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~------- 136 (326)
T PRK12767 67 KEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEF---LKENGIPTPKSYLPESLE------- 136 (326)
T ss_pred HhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHH---HHHcCCCCCCEEcccCHH-------
Confidence 3568999986533222223345667788999999999999999999999999 999999999998775432
Q ss_pred hHHHH--HHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 712 DIWHE--LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 712 ~~~~~--~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.+ ....+ +||+|+||..+++|.||.++++.+++.. +++. ...+|||+|
T Consensus 137 -~~~~~~~~~~~-~~P~viKP~~g~~s~gv~~v~~~~el~~---~~~~-----------------------~~~~lvqey 188 (326)
T PRK12767 137 -DFKAALAKGEL-QFPLFVKPRDGSASIGVFKVNDKEELEF---LLEY-----------------------VPNLIIQEF 188 (326)
T ss_pred -HHHhhhhcccC-CCCEEEEeCCCCCccCeEEeCCHHHHHH---HHHh-----------------------CCCeEEEec
Confidence 1222 33567 6999999999999999999999888775 3322 247999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcC-CCCceeeCceEEEecCCccccccccccCCCce-eEcCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGI-NLTPPPAS 867 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~-~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~-~~~P~~~~ 867 (953)
|+|+ |+++.++.+ +|..+.......+. ..+|... ..+.
T Consensus 189 i~G~-------------------------e~~v~~~~~~~G~~~~~~~~~~~~-----------~~~g~~~~~~~~---- 228 (326)
T PRK12767 189 IEGQ-------------------------EYTVDVLCDLNGEVISIVPRKRIE-----------VRAGETSKGVTV---- 228 (326)
T ss_pred cCCc-------------------------eEEEEEEEcCCCCEEEEEEeeeee-----------ecCCceeEEEEc----
Confidence 9997 999998887 56544332221110 1112111 1111
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCC
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 918 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGl 918 (953)
. .+++++.+.+++++||+.|++++||+++ +|++|++|||++++-
T Consensus 229 --~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~--~g~~~viEiNpR~~g 272 (326)
T PRK12767 229 --K---DPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLFEINPRFGG 272 (326)
T ss_pred --C---CHHHHHHHHHHHHhcCCeeeEEEEEEEE--CCeEEEEEEeCCCCC
Confidence 1 1468899999999999999999999998 388999999987764
No 104
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.82 E-value=6.4e-19 Score=201.39 Aligned_cols=242 Identities=19% Similarity=0.255 Sum_probs=177.7
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
..|.+++.. |...||..++.+++..|+-+.||++.+++.+.||..++++ ++++|||++|+.-- +.. + .+.
T Consensus 74 gadai~pGy-gflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~---~~~aGVP~vpgs~~----~~~-~-~ee 143 (449)
T COG0439 74 GADAIHPGY-GFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRL---MAKAGVPVVPGSDG----AVA-D-NEE 143 (449)
T ss_pred CCceEcccc-hhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHH---HHHcCCCcCCCCCC----CcC-C-HHH
Confidence 457777776 4777999999999999999999999999999999999999 99999999998611 100 1 123
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
..++.+++ +|||+|||+.+|+|+||.+|++.+||.+....+...... +.+ ++.+++|+||++.
T Consensus 144 ~~~~a~~i-GyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~--------~fg--------~~~v~iEk~i~~~ 206 (449)
T COG0439 144 ALAIAEEI-GYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEA--------AFG--------NPRVYLEKFIEGP 206 (449)
T ss_pred HHHHHHHc-CCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHH--------hcC--------CCcEEeeeeccCC
Confidence 45567788 599999999999999999999999998743333322211 001 4569999999997
Q ss_pred ccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCC-ccccccccccCCCceeEcCCCCCCCCHH
Q 002207 794 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 794 ~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~-~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
+.+.+.|+++...... .....+ .+.. .+ +......|.+ .++++
T Consensus 207 ------------------------rhievqv~gD~~g~~i-----~l~eRdcsiqr---r~--qkvieeapsp--~~~~e 250 (449)
T COG0439 207 ------------------------RHIEVQVLGDGHGNVI-----HLGERDCSIQR---RH--QKVIEEAPSP--LLTEE 250 (449)
T ss_pred ------------------------ceEEEEEEEcCcccEE-----EEEeccCCCcC---Cc--cceeeecCCC--CCCHH
Confidence 5888999998643221 111111 1111 11 1223345655 47899
Q ss_pred HHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCC-CCCCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG-MTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PG-lt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
..+++-+.+.++++.+|.+|.+.++|.++. +|++||+|+||+=+ -.+.+ . ..+..|+++..|..|.
T Consensus 251 ~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~~yfiEmN~Rlqveh~vt---e-------~vtGiDlv~~qi~ia~ 317 (449)
T COG0439 251 LREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGEFYFIEMNTRLQVEHPVT---E-------MVTGIDLVKEQIRIAA 317 (449)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CCCEEEEEEecccccCccce---e-------hhhhhhHHHHHHHHHc
Confidence 999999999999999999999999999985 68999999998433 22221 1 1344688888888775
No 105
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.81 E-value=3e-19 Score=183.30 Aligned_cols=177 Identities=21% Similarity=0.209 Sum_probs=115.9
Q ss_pred HhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh
Q 002207 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI 281 (953)
Q Consensus 202 i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~ 281 (953)
+|+||..++++++++|||+|++..+.+.+ ++.++... .++|+||||..+++|.||.++++.+++.+...++
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~----~~~~~~~~-----~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~ 71 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE----ELRAFAED-----LGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEI 71 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH----HHHHHHHH-----SSSSEEEEESS-STTTT-EEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH----HHHHHHHH-----cCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHH
Confidence 47899999999999999999999987654 23333332 5589999999999999999999999988776655
Q ss_pred HhcCC--CCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC
Q 002207 282 ILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359 (953)
Q Consensus 282 ~~~~~--~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P 359 (953)
..... ...+|||+||+| .|+++.++-. ++..+.+...+..... ..++... .......+
T Consensus 72 ~~~~~~~~~~~ivqe~i~g-~e~~~~~~~~----~G~~~~~~~~~~~~~~-----------~~~~~~~----~~~~~~~~ 131 (184)
T PF13535_consen 72 REDSPLGNGPVIVQEYIPG-DEYSVDGVVD----DGEVVFAGISRYVRQS-----------PGHFSGG----VPTGYSVP 131 (184)
T ss_dssp HHHHS-HSSSEEEEE---S-EEEEEEEEEE----TTEEEEEEEEEEEEEE-----------TCCCSSS----EEEEEEES
T ss_pred HHhcccCCccEEEEEeeee-eeEEEEEEEE----cceEEEEEEEEEeccc-----------ccccccc----eeeeeecc
Confidence 43222 468999999997 9999998853 2334443433332210 0001100 11222223
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCC-CCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 360 PRFPIVVINSIREGASLLFQRLGL-CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 360 a~l~~~~~~~i~~~a~~~~~aLg~-~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
. +....+++++.+.++++++|+ .|++++||++ +++|+++|+|||+++|
T Consensus 132 ~--~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~-----------------~~~g~~~~iEiN~R~~ 180 (184)
T PF13535_consen 132 S--EPPLPEELRDLARKLLRALGYRNGFFHIDFIV-----------------DPDGELYFIEINPRFG 180 (184)
T ss_dssp ----CEHHHHHHHHHHHHHHHHT--SEEEEEEEEE-----------------ETCCEEEEEEEESS--
T ss_pred c--ccccHHHHHHHHHHHHHHcCCceEEEEEEEEE-----------------eCCCCEEEEEECccCC
Confidence 2 223348899999999999999 8999999987 5679999999999987
No 106
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.81 E-value=1.2e-18 Score=182.66 Aligned_cols=204 Identities=21% Similarity=0.260 Sum_probs=142.8
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 755 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al 755 (953)
||..++++ ++++|||++++....-.+ .+.+.++.+++ +||++|||+.+|++.|+.+|++.++|.++.
T Consensus 1 Dk~~~~~~---~~~~gvp~~pg~~~~~~~------~eea~~~a~~i-GyPVliKas~ggGG~gm~iv~~~~eL~~~~--- 67 (211)
T PF02786_consen 1 DKIRFRKL---AKKLGVPVPPGSTVPISS------VEEALEFAEEI-GYPVLIKASAGGGGRGMRIVHNEEELEEAF--- 67 (211)
T ss_dssp SHHHHHHH---HHHTT-BBSSBESSSBSS------HHHHHHHHHHH--SSEEEEETTSSTTTSEEEESSHHHHHHHH---
T ss_pred CHHHHHHH---HHHCCCCcCCCCCCCCCC------HHHHHHHHHhc-CCceEEeecccccccccccccchhhhhhhh---
Confidence 89999999 999999999987542111 23345667888 699999999999999999999999999754
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC
Q 002207 756 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 835 (953)
Q Consensus 756 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~ 835 (953)
+.+....+ .+. .+..++||+|++|. +|++|.+++|+......+
T Consensus 68 ~~~~~~s~-----~~f--------g~~~v~iek~i~~~------------------------reiEvqvi~D~~gn~~~~ 110 (211)
T PF02786_consen 68 ERAQRESP-----AAF--------GDGPVLIEKFIEGA------------------------REIEVQVIRDGKGNVVHL 110 (211)
T ss_dssp HHHHHHHH-----HHH--------STS-EEEEE--SSE------------------------EEEEEEEEEETTSEEEEE
T ss_pred hhccccCc-----ccc--------ccceEEEeeehhhh------------------------hhhhhhhhhccccceeee
Confidence 33332200 000 15789999999984 799999999865443333
Q ss_pred ceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC
Q 002207 836 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915 (953)
Q Consensus 836 p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~ 915 (953)
...+.. +.. +.+.+....|++. +++++.++|++.+.+++++||+.|.++|+|.+++++|++||+|+||
T Consensus 111 ~~~e~~--------~~~-hs~dsi~~~P~~~--L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNp- 178 (211)
T PF02786_consen 111 GERECS--------EQR-HSQDSIEEAPAQT--LSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNP- 178 (211)
T ss_dssp EEEEEE--------EEE-TTEEEEEEES-SS--S-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEES-
T ss_pred eeeccc--------ccc-ccccceeEeeccc--cchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccC-
Confidence 333321 111 3455677788874 8999999999999999999999999999999996579999999994
Q ss_pred CCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 916 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 916 PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
.++....+..++. .| +|+..-+.+|+
T Consensus 179 -R~~~~~p~~e~~t-----g~--dlv~~~~~ia~ 204 (211)
T PF02786_consen 179 -RLQREHPVTEKVT-----GY--DLVRVQIRIAL 204 (211)
T ss_dssp -S--TTHHHHHHHH-----T----HHHHHHHHHT
T ss_pred -CCCCcchHHHHHH-----CC--CHHHHHHHHHC
Confidence 5556655666665 45 56666666665
No 107
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.81 E-value=1.4e-18 Score=218.76 Aligned_cols=219 Identities=18% Similarity=0.163 Sum_probs=158.1
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
.+..+.+.+|+| |+++.++.+|+||..||++ |+++|||+|++..+.+.+ .+.++...+ +||+||||
T Consensus 84 ~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~---L~~~GIp~P~~~~v~~~~--------e~~~~~~~~-~~PvVVKP 149 (887)
T PRK02186 84 VASEVARRLGLP--AANTEAIRTCRDKKRLART---LRDHGIDVPRTHALALRA--------VALDALDGL-TYPVVVKP 149 (887)
T ss_pred HHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHH---HHHcCCCCCCEEEeCCHH--------HHHHHHHhC-CCCEEEEe
Confidence 466888999999 7889999999999999999 999999999999886532 233445678 69999999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
.++++|.||.+|++.+|+.++ ++..... ....+|||+||+|+
T Consensus 150 ~~g~gS~GV~~v~~~~el~~a---~~~~~~~------------------~~~~~lvEEfI~G~----------------- 191 (887)
T PRK02186 150 RMGSGSVGVRLCASVAEAAAH---CAALRRA------------------GTRAALVQAYVEGD----------------- 191 (887)
T ss_pred CCCCCCCCeEEECCHHHHHHH---HHHHHhc------------------CCCcEEEeecccCC-----------------
Confidence 999999999999999998764 4433221 14679999999997
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL 890 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~ 890 (953)
||+|.++..++....+ +..+.. ......|.. ....+|.+ ++++..+++.+.+.+++++||+
T Consensus 192 --------E~sVe~i~~~g~~~i~-~i~~k~-----~~~~~~~ve--~g~~~P~~---l~~~~~~~l~~~~~~~l~aLG~ 252 (887)
T PRK02186 192 --------EYSVETLTVARGHQVL-GITRKH-----LGPPPHFVE--IGHDFPAP---LSAPQRERIVRTVLRALDAVGY 252 (887)
T ss_pred --------cEEEEEEEECCcEEEE-EEEeee-----cCCCCCeEE--eccccCCC---CCHHHHHHHHHHHHHHHHHcCC
Confidence 8888888766543322 111110 000011111 12246766 5788999999999999999999
Q ss_pred c-ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 891 E-GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 891 ~-G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
. |+.++||+++. +++||+|||+++|=+. +++....+.| .++++.+++.++
T Consensus 253 ~~G~~hvE~~~t~--~g~~liEIn~R~~G~~---i~~li~~a~G----vd~~~~~i~~~l 303 (887)
T PRK02186 253 AFGPAHTELRVRG--DTVVIIEINPRLAGGM---IPVLLEEAFG----VDLLDHVIDLHL 303 (887)
T ss_pred CcCceEEEEEEEC--CCEEEEEECCCCCCcc---HHHHHHHHHC----cCHHHHHHHHhC
Confidence 6 99999999983 5699999999876433 2332222222 245555565554
No 108
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.80 E-value=1.1e-17 Score=187.58 Aligned_cols=318 Identities=14% Similarity=0.107 Sum_probs=200.7
Q ss_pred hcCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 72 ARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 72 ~~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+..++++|+.|++ .|+-++++.++++||+++.+........|. ...+. ..+ ..+.... ...
T Consensus 13 ~y~~~~~~i~~~~s----------hsaL~I~~gAkeeGf~ti~v~~~~~~~~y~---~~~~~---De~-i~v~~~~-di~ 74 (358)
T PRK13278 13 KYDLDNITIATIGS----------HSSLQILKGAKKEGFRTIAICKKKREVFYK---RFPVA---DEF-IIVDDFS-DIL 74 (358)
T ss_pred hcCcccceEEEEec----------ccHHHHHHHHHHCCCeEEEEEeCCCccccc---ccccc---ceE-EEEcchh-hhc
Confidence 44445679999972 358899999999999998776543321111 00000 000 0000000 000
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCcc
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~ 231 (953)
.......+. +-+. +.+.||.+..--....+ +.+++|+.| +..+...+.||..+|++|+++|||+|+++ .+.+
T Consensus 75 -~~~~~~~l~-~~~~-iiIp~gs~v~y~~~d~l-~~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~~--~~~~- 146 (358)
T PRK13278 75 -NEAVQEKLR-EMNA-ILIPHGSFVAYLGLENV-EKFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRKY--ESPE- 146 (358)
T ss_pred -CHHHHHHHh-hcCc-EEEeCCCcceeecHHHH-HHCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCEe--CCHH-
Confidence 011111222 1233 33445666533334455 489999877 67799999999999999999999999963 2211
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---CCCCcEEEeccCCCCeEEEEEEEE
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.+.||+||||..+.+|.|+.+|++.+|+.+++..++.. +..+.++|||||.| .||++.++-
T Consensus 147 ---------------~i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G-~e~sv~~f~ 210 (358)
T PRK13278 147 ---------------DIDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVG-VPYYFHYFY 210 (358)
T ss_pred ---------------HcCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCC-cEEEEEEEE
Confidence 14589999999999999999999999987777664321 12578999999998 999999984
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCc------cCCCceEEEcCCCCCHHHHHHHHHHHHHHHHH--
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY------LPTQQVAYHTPPRFPIVVINSIREGASLLFQR-- 380 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky------~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~a-- 380 (953)
..- +++...+...+..... .+..+..-++- .+..-..-..|+.+.+.+..++.+.+.++.++
T Consensus 211 s~~--~~~~e~l~id~r~~~~--------~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~ 280 (358)
T PRK13278 211 SPI--KNRLELLGIDRRYESN--------IDGLVRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSK 280 (358)
T ss_pred ecc--CCeEEEEeeceeeeec--------ccceeeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHH
Confidence 210 1222233332221110 11222211110 11111223478888888889999999998888
Q ss_pred --h--CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCC-CCCC----cchHHHHHHHhCCCHHHHHHHH
Q 002207 381 --L--GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS-GMEQ----TSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 381 --L--g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~P-G~t~----~S~~p~~a~~~G~s~~~ll~~l 451 (953)
+ |+.|..++|+++ ++++.+|++|||+++ |-|. +|-|..+.....+|...=+.+=
T Consensus 281 ~~~~~~~~Gp~~ie~~~-----------------~~d~~~~V~Eis~R~~ggtn~~~~~s~y~~~~~~~~~~~grria~e 343 (358)
T PRK13278 281 ELVPPGMIGPFCLESVV-----------------TDNLEIVVFEISARIVAGTNLYMNGSPYSYLYWDEPMSMGRRIARE 343 (358)
T ss_pred HhcCccccCCceEEEEE-----------------cCCCCEEEEEEeCcccCCccceeCCCcchheecCCcccHHHHHHHH
Confidence 4 788999999886 688999999999999 6443 4555555445567776666666
Q ss_pred HHHHhhh
Q 002207 452 IGHACSR 458 (953)
Q Consensus 452 i~~a~~r 458 (953)
|..|++.
T Consensus 344 i~~a~~~ 350 (358)
T PRK13278 344 IKLALEK 350 (358)
T ss_pred HHHHHhh
Confidence 6777665
No 109
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.80 E-value=6.7e-19 Score=180.71 Aligned_cols=180 Identities=22% Similarity=0.230 Sum_probs=117.5
Q ss_pred HhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHH
Q 002207 673 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 752 (953)
Q Consensus 673 l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~ 752 (953)
.|+||..|+++ ++++|||+|++..+...+ .+.++...+ +||+||||..+++|.||.++++.++|..+.
T Consensus 1 ~~~dK~~~~~~---~~~~gv~~P~~~~~~~~~--------~~~~~~~~~-~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~ 68 (184)
T PF13535_consen 1 RCNDKYRMREL---LKKAGVPVPKTRIVDSEE--------ELRAFAEDL-GFPFVVKPVDGSGSRGVFIVHSPEELEAAL 68 (184)
T ss_dssp -TCCHHHHHHH---HHHHTS----EEEECSHH--------HHHHHHHHS-SSSEEEEESS-STTTT-EEESSHHHHHHHH
T ss_pred CCCCHHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHc-CCCEEEEcCccccCCCEEEeCCHHHHHHHH
Confidence 47899999999 899999999999887643 345566778 599999999999999999999999999765
Q ss_pred HHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCce
Q 002207 753 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH 832 (953)
Q Consensus 753 ~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~ 832 (953)
+.+..... .....+|||+||+|. |+++.++..+|..+
T Consensus 69 ~~~~~~~~------------------~~~~~~ivqe~i~g~-------------------------e~~~~~~~~~G~~~ 105 (184)
T PF13535_consen 69 AEIREDSP------------------LGNGPVIVQEYIPGD-------------------------EYSVDGVVDDGEVV 105 (184)
T ss_dssp HHHHHHHS-------------------HSSSEEEEE---SE-------------------------EEEEEEEEETTEEE
T ss_pred HHHHHhcc------------------cCCccEEEEEeeeee-------------------------eEEEEEEEEcceEE
Confidence 44443321 014689999999997 88888776666653
Q ss_pred eeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCC-cceEEEEEEEEcCCCcEEEEe
Q 002207 833 SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL-EGFSRIDAFVNVDNGEVLIIE 911 (953)
Q Consensus 833 ~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~-~G~ariDf~v~~~~g~~~viE 911 (953)
............. ++... .......+. +.+..+++++.+.++++++|+ .|+++|||+++. +|++|++|
T Consensus 106 ~~~~~~~~~~~~~--~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~-~g~~~~iE 174 (184)
T PF13535_consen 106 FAGISRYVRQSPG--HFSGG---VPTGYSVPS-----EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDP-DGELYFIE 174 (184)
T ss_dssp EEEEEEEEEEETC--CCSSS---EEEEEEES-------CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEET-CCEEEEEE
T ss_pred EEEEEEEeccccc--ccccc---eeeeeeccc-----ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeC-CCCEEEEE
Confidence 3322211111010 00000 011112222 223448999999999999999 899999999996 59999999
Q ss_pred eCCCCCC
Q 002207 912 VNTVPGM 918 (953)
Q Consensus 912 INt~PGl 918 (953)
||+++|=
T Consensus 175 iN~R~~G 181 (184)
T PF13535_consen 175 INPRFGG 181 (184)
T ss_dssp EESS--S
T ss_pred ECccCCC
Confidence 9998763
No 110
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.79 E-value=1.2e-17 Score=184.59 Aligned_cols=222 Identities=16% Similarity=0.122 Sum_probs=160.3
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEEC-CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhh
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG-TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvG-s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~ 239 (953)
++++|+++|..+... -..-++.|+..|+..+- ++..+..++.||+.+.+.++++|+|+|+++.+++.+. +...
T Consensus 64 ~~~Idv~~P~~~~~~--l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~e----l~~a 137 (329)
T PF15632_consen 64 EHGIDVFVPGRNREL--LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADE----LKAA 137 (329)
T ss_pred HhCCeEEEcCccHHH--HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHH----HHHH
Confidence 468999999998644 33457889999999988 7899999999999999999999999999999987653 3333
Q ss_pred hhhcCCCCCCCcEEEeeCCCCCceeEEEeCC-HHHHH------------HHHHHhHh-cCCCCcEEEeccCCCCeEEEEE
Q 002207 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG-VIDSL------------KKAKGIIL-EGIDDRVVVELFLEGGSEFTAI 305 (953)
Q Consensus 240 ~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~-~~el~------------~~a~~~~~-~~~~~~vlVEefI~Gg~E~tv~ 305 (953)
.+++ ...+.|+.|||+.|-+|.|..++++ .+++. +.+..++. ...-..+||.+|++| .||+|.
T Consensus 138 ~~~l--~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD 214 (329)
T PF15632_consen 138 YEEL--RFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVD 214 (329)
T ss_pred HHhc--CCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEE
Confidence 3332 2234579999999999999999983 33211 11122222 123468999999998 999999
Q ss_pred EEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q 002207 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCD 385 (953)
Q Consensus 306 Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G 385 (953)
++.+ .++.++..|. .|. |. ..... - ...+.++|.++.+++|+.|
T Consensus 215 ~l~~----~G~viaaV~R----------------------~K~--G~-~q~l~---~----~~~l~e~a~~l~~~~~l~g 258 (329)
T PF15632_consen 215 CLAD----EGRVIAAVPR----------------------RKL--GR-RQVLE---N----DEELIELARRLAEAFGLDG 258 (329)
T ss_pred EEec----CCEEEEEEEE----------------------Eec--Cc-eeEEE---E----CHHHHHHHHHHHHHhCCCc
Confidence 9953 3444432221 111 11 11111 1 2456899999999999999
Q ss_pred eeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHH
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 449 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~ 449 (953)
..+|||+. |.+|.+++|||||+|. ..++ +..++|++++.+.-
T Consensus 259 ~~NiQ~r~-----------------d~~g~p~LLEINpR~s----GGi~-~s~~aGvNlp~la~ 300 (329)
T PF15632_consen 259 LFNIQFRY-----------------DEDGNPKLLEINPRPS----GGIG-YSCAAGVNLPYLAV 300 (329)
T ss_pred eEEEEEEE-----------------cCCCCEEEEEeCCCCc----cchh-hHhhcCCChHHHHH
Confidence 99999875 6789999999999886 2223 33478999887754
No 111
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.77 E-value=7.5e-17 Score=176.10 Aligned_cols=269 Identities=19% Similarity=0.141 Sum_probs=189.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
++|+||.||+= |+-...+.++.||+|++++.+.+.....+....... +++ ..+..
T Consensus 2 ~tvgIlGGGQL---------grMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~----~~d------------D~~al 56 (375)
T COG0026 2 KTVGILGGGQL---------GRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVA----AYD------------DPEAL 56 (375)
T ss_pred CeEEEEcCcHH---------HHHHHHHHHhcCCEEEEecCCCCCchhhcccceeec----CCC------------CHHHH
Confidence 57999999985 888999999999999988766664332221111100 000 01122
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+..+.|+|--=+.=-. .-.+..+.....+ -+++.+.+++.||+..|++|+++|+|||+|..+.+.++ +.
T Consensus 57 ~ela~~~DViT~EfE~V~--~~aL~~l~~~~~v---~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~e----l~ 127 (375)
T COG0026 57 RELAAKCDVITYEFENVP--AEALEKLAASVKV---FPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEE----LD 127 (375)
T ss_pred HHHHhhCCEEEEeeccCC--HHHHHHHHhhcCc---CCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHH----HH
Confidence 334457888866552100 1124444444344 47899999999999999999999999999999987653 33
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCC-ceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGS-SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gs-S~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
..++. +++|.|+|-+++|. ++|..++++.+++...+.... .....++|+|++=.+|+++.+.+. .++.
T Consensus 128 ~~~~~-----~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~---~~~~~vlE~fV~F~~EiSvi~aR~---~~G~ 196 (375)
T COG0026 128 AAAAD-----LGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLA---EGGVPVLEEFVPFEREISVIVARS---NDGE 196 (375)
T ss_pred HHHHH-----cCCceEEEeccccccCCCeEEeeCcccchhhHhhhh---ccCceeEEeecccceEEEEEEEEc---CCCC
Confidence 44333 66899999999877 999999998877655443221 223349999998668898888874 3334
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCC-ceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ-QVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~-~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
..+.++.| .++.++ -...+.|+.++++++++.+++|.++.++|++.|+..|+||+
T Consensus 197 ~~~yP~~e----------------------N~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv-- 252 (375)
T COG0026 197 VAFYPVAE----------------------NVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFV-- 252 (375)
T ss_pred EEEecccc----------------------eeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEE--
Confidence 44444433 222222 12345799999999999999999999999999999999997
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCc
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~ 430 (953)
+.||+++++|+-|+|.=+.+
T Consensus 253 ---------------~~dg~llvNEiAPRvHNSGH 272 (375)
T COG0026 253 ---------------TPDGELLVNEIAPRVHNSGH 272 (375)
T ss_pred ---------------ECCCcEEEeeccCCCCCccc
Confidence 57889999999999974443
No 112
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=99.76 E-value=5.4e-17 Score=179.39 Aligned_cols=234 Identities=17% Similarity=0.249 Sum_probs=174.8
Q ss_pred CCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC
Q 002207 644 GGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723 (953)
Q Consensus 644 G~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~ 723 (953)
|+..|+.....+|+..||-|+||+..+.+-.-||...|++ ++++|+|+.|.+--...+ .+.+.+...++ +
T Consensus 79 GFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~i---m~~AgVp~vpG~~g~~qs------~e~~~~~a~eI-g 148 (670)
T KOG0238|consen 79 GFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQI---MKAAGVPLVPGYHGEDQS------DEEAKKVAREI-G 148 (670)
T ss_pred cccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHH---HHhcCCccccCccccccc------HHHHHHHHHhc-C
Confidence 5555899999999999999999999999999999999999 899999988764322211 24456777889 6
Q ss_pred CcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccccccccccc
Q 002207 724 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803 (953)
Q Consensus 724 ~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~ 803 (953)
||+++|+..+|+++|+.++.+.+|+.+ .++.+.+.. +.+| .++.+++|+||+..
T Consensus 149 yPvMiKa~~GGGGkGMria~~~~ef~~---~~~~ak~Ea-~~sF------------Gdd~~llEkfi~np---------- 202 (670)
T KOG0238|consen 149 YPVMIKATAGGGGKGMRIAWSEEEFEE---GLESAKQEA-AKSF------------GDDGMLLEKFIDNP---------- 202 (670)
T ss_pred CcEEEEeccCCCCcceEeecChHHHHH---HHHHHHHHH-Hhhc------------CcchhhHHHhccCC----------
Confidence 999999999999999999999999886 333332210 0011 17889999999987
Q ss_pred ccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHH
Q 002207 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIEL 883 (953)
Q Consensus 804 ~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~ 883 (953)
|.+++.|++++-.....+..... .+-.-..|. ..-.|+| .++++...++.+.|.+
T Consensus 203 --------------RHiEvQv~gD~hGnav~l~ERdC----SvQRRnQKi-----iEEaPap--~l~~e~R~~lgeaAv~ 257 (670)
T KOG0238|consen 203 --------------RHIEVQVFGDKHGNAVHLGERDC----SVQRRNQKI-----IEEAPAP--NLPEETRRALGEAAVR 257 (670)
T ss_pred --------------ceEEEEEEecCCCcEEEeccccc----chhhhhhhh-----hhcCCCC--CCCHHHHHHHHHHHHH
Confidence 69999999987433222211110 111111221 2234665 4899999999999999
Q ss_pred HHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC-CCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 884 IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-PSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 884 ~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt-~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
+++++|..|...|+|++|. .+++||+|+||+--.. |.+ . ..+..||+++.|+.|.
T Consensus 258 aa~avgY~~aGTVEFi~D~-~~~FyFmEmNTRLQVEHPvT---E-------mItg~DLVewqiRvA~ 313 (670)
T KOG0238|consen 258 AAKAVGYVGAGTVEFIVDS-KDNFYFMEMNTRLQVEHPVT---E-------MITGTDLVEWQIRVAA 313 (670)
T ss_pred HHHhhCCcccceEEEEEcC-CCcEEEEEeeceeeecccch---h-------hccchHHHHHHHHHhc
Confidence 9999999999999999997 6899999999965543 332 1 1355799999998875
No 113
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.76 E-value=6e-17 Score=179.07 Aligned_cols=224 Identities=18% Similarity=0.169 Sum_probs=163.1
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeC-CChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTG-PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G-~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
+..+|+++|..|... -..=+..|+..|+..+- ++..+..++.||..+.+. +++.|||+|+++.+++.+
T Consensus 64 ~~~Idv~~P~~~~~~--l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~---~~~~~ipvp~~~~v~t~~------ 132 (329)
T PF15632_consen 64 EHGIDVFVPGRNREL--LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEF---MEANGIPVPPYWRVRTAD------ 132 (329)
T ss_pred HhCCeEEEcCccHHH--HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHH---HHhCCCCCCCEEEeCCHH------
Confidence 457899999887765 22346889999999998 889999999999999998 899999999999998754
Q ss_pred hhHHHHHHhhcCCCc---EEEecCCCCCCcceEEeC-CcccHHHHHH---------HHHHHHhhCCCCCcccccccccCC
Q 002207 711 VDIWHELTSKLQCKT---LCVKPARDGCSTGVARLC-CAEDLTVYVK---------ALEECLLRIPPNSFSRAHGMIEMP 777 (953)
Q Consensus 711 ~~~~~~~~~~lg~~P---lvVKP~~~gsS~GV~~v~-~~~eL~~~~~---------al~~a~~~~~~~~~~~~~~~~~~p 777 (953)
.++...+++ .+| +||||+.+-+|.|.++++ +.++++.+.. .+..+++. +
T Consensus 133 --el~~a~~~l-~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~--------~------- 194 (329)
T PF15632_consen 133 --ELKAAYEEL-RFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQR--------S------- 194 (329)
T ss_pred --HHHHHHHhc-CCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhc--------c-------
Confidence 234444555 354 999999999999999998 5555543211 11111111 0
Q ss_pred CCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCC
Q 002207 778 NPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 857 (953)
Q Consensus 778 ~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~ 857 (953)
....++||.||++|. |++|+++.+.|..++..|..+. |.
T Consensus 195 -~~~~~llvMeyL~G~-------------------------EySVD~l~~~G~viaaV~R~K~---------------G~ 233 (329)
T PF15632_consen 195 -EEFPPLLVMEYLPGP-------------------------EYSVDCLADEGRVIAAVPRRKL---------------GR 233 (329)
T ss_pred -CCCCCcEEecCCCCC-------------------------eEEEEEEecCCEEEEEEEEEec---------------Cc
Confidence 125789999999998 9999999999887665554322 11
Q ss_pred ceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCH
Q 002207 858 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 937 (953)
Q Consensus 858 ~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp 937 (953)
...+. ..+++.+.|+++++++|+.|+.+|+|+.|. +|+++++||||+|.=+ .+++.++ |..+|
T Consensus 234 ~q~l~----------~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~-~g~p~LLEINpR~sGG-----i~~s~~a-GvNlp 296 (329)
T PF15632_consen 234 RQVLE----------NDEELIELARRLAEAFGLDGLFNIQFRYDE-DGNPKLLEINPRPSGG-----IGYSCAA-GVNLP 296 (329)
T ss_pred eeEEE----------ECHHHHHHHHHHHHHhCCCceEEEEEEEcC-CCCEEEEEeCCCCccc-----hhhHhhc-CCChH
Confidence 12221 123667889999999999999999999985 7999999999866422 2333333 45777
Q ss_pred HHHHH
Q 002207 938 HQFFR 942 (953)
Q Consensus 938 ~~l~~ 942 (953)
...+.
T Consensus 297 ~la~~ 301 (329)
T PF15632_consen 297 YLAVK 301 (329)
T ss_pred HHHHH
Confidence 55554
No 114
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.6e-16 Score=176.42 Aligned_cols=237 Identities=14% Similarity=0.168 Sum_probs=167.9
Q ss_pred CcCEEEEcCCCCCCCch-HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 163 NVDIVFPTIHGRFGEDG-GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg-~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
..|++|+.....+-- + .+-..+|..|++.+ +++.+...|.||..+-++|..+|+|+|++.++.+.+... .+.+
T Consensus 78 ~~D~i~~R~~~~~~~-~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~----~~~~ 151 (318)
T COG0189 78 ELDVIIMRKDPPFDF-ATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAA----EFVA 151 (318)
T ss_pred cCCEEEEecCCchhh-HHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHH----HHHH
Confidence 689999988554433 3 25679999999887 679999999999999999999999999999988753221 2221
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHH-HHHHHHHHhHhcCCCCcEEEeccCCC-CeEEEEEEEEeCCCCccccEE
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI-DSLKKAKGIILEGIDDRVVVELFLEG-GSEFTAIVLDVGSGFDCHPVV 319 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~-el~~~a~~~~~~~~~~~vlVEefI~G-g~E~tv~Vl~~~~g~~~~~v~ 319 (953)
..++||+|+||.+|..|.||.++++.+ ++.+.+.... ......+|||+||+- .++....++++ +.+++
T Consensus 152 ----~~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~-~~~~~~~ivQeyi~~~~~~~rrivv~~-----~~~~~ 221 (318)
T COG0189 152 ----EHLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLT-QEGRKLIIVQEYIPKAKRDDRRVLVGG-----GEVVA 221 (318)
T ss_pred ----HhcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHh-ccccceEehhhhcCcccCCcEEEEEeC-----CEEeE
Confidence 136789999999999999999999998 7776655432 223346999999942 24556666642 22333
Q ss_pred ecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCc
Q 002207 320 LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTH 399 (953)
Q Consensus 320 l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~ 399 (953)
....+.. + .--+|+..+..|+. ..|..+++++ +++|.++.++||+ +++.||++.
T Consensus 222 ~y~~~R~--~----------~~~~~R~N~a~Gg~---~e~~~l~~e~----~elA~kaa~~lGl-~~~GVDiie------ 275 (318)
T COG0189 222 IYALARI--P----------ASGDFRSNLARGGR---AEPCELTEEE----EELAVKAAPALGL-GLVGVDIIE------ 275 (318)
T ss_pred Eeeeccc--c----------CCCCceeecccccc---ccccCCCHHH----HHHHHHHHHHhCC-eEEEEEEEe------
Confidence 1111111 1 11256667766652 2455676665 8999999999987 599999875
Q ss_pred cccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 400 VFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 400 ~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++| +||+|||..|+.-.. +.+..|++..+++...++...++
T Consensus 276 -----------~~~g-~~V~EVN~sP~~~~~-----i~~~~g~~~~~~~~~~ie~~~~~ 317 (318)
T COG0189 276 -----------DKDG-LYVTEVNVSPTGKGE-----IERVTGVNIAGLIIDAIEKFVRA 317 (318)
T ss_pred -----------cCCC-cEEEEEeCCCccccc-----hhhhcCCchHHHHHHHHHHHHhc
Confidence 4455 899999999964432 22356888888888888776543
No 115
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.75 E-value=3.9e-17 Score=183.72 Aligned_cols=234 Identities=18% Similarity=0.267 Sum_probs=172.2
Q ss_pred CCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC
Q 002207 644 GGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723 (953)
Q Consensus 644 G~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~ 723 (953)
|+..||......|+..|+-++||++.+....-||...|++ +.++|+|+.|.+.=...+ .+.+..+.+++ +
T Consensus 83 GFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l---~~~AgVp~VPG~~g~~qd------~~~~~~~A~ei-G 152 (645)
T COG4770 83 GFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKL---AAEAGVPTVPGYHGPIQD------AAELVAIAEEI-G 152 (645)
T ss_pred cccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHH---HHHcCCCccCCCCCcccC------HHHHHHHHHhc-C
Confidence 4455899999999999999999999999999999999999 899999998875322211 23355667889 6
Q ss_pred CcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccccccccccc
Q 002207 724 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803 (953)
Q Consensus 724 ~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~ 803 (953)
||+.+|++.+|+++|+.++.+.+|+.+ +++.+.+.- .. +.| ++.++||+|++-.
T Consensus 153 yPVlIKAsaGGGGKGMRvv~~~~e~~e---~l~sarrEA-~a----sFG--------ddrv~iEkyl~~P---------- 206 (645)
T COG4770 153 YPVLIKASAGGGGKGMRVVETPEEFAE---ALESARREA-KA----SFG--------DDRVFIEKYLDKP---------- 206 (645)
T ss_pred CcEEEEeccCCCCCceEeecCHHHHHH---HHHHHHHHH-Hh----hcC--------CceEehhhhcCCC----------
Confidence 999999999999999999999999886 444443220 00 111 7899999999976
Q ss_pred ccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHH
Q 002207 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIEL 883 (953)
Q Consensus 804 ~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~ 883 (953)
|.|++.|++++......+..... .+..-..|. ..--|+|. |+++..++|-+.|.+
T Consensus 207 --------------RHIEiQV~aD~HGNvv~LgERdC----SlQRRhQKV-----IEEAPaP~--l~~~~R~amg~aAv~ 261 (645)
T COG4770 207 --------------RHIEIQVFADQHGNVVHLGERDC----SLQRRHQKV-----IEEAPAPF--LTEETREAMGEAAVA 261 (645)
T ss_pred --------------ceEEEEEEecCCCCEEEeecccc----chhhhcchh-----hhcCCCCC--CCHHHHHHHHHHHHH
Confidence 69999999987544333222111 011111121 22346664 899999999999999
Q ss_pred HHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC-CCchHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002207 884 IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-PSTVLIHQALSEQPPMYPHQFFRKVLDLGS 949 (953)
Q Consensus 884 ~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt-~~S~l~~~a~~~~~~~yp~~l~~~li~~a~ 949 (953)
++++.|..|-..|+|+++. ++.+||+|+||+--.- |.+ + ..-..||+++.|+.|-
T Consensus 262 ~a~avgY~gAGTVEFivd~-~~~f~FlEMNTRLQVEHPVT--------E--~iTGiDLVewqiRVA~ 317 (645)
T COG4770 262 AAKAVGYVGAGTVEFIVDA-DGNFYFLEMNTRLQVEHPVT--------E--LITGIDLVEWQIRVAS 317 (645)
T ss_pred HHHhcCCCcCceEEEEEcC-CCcEEEEEeecceeccccch--------h--hhhhhHHHHHHHHHhc
Confidence 9999999999999999996 6889999999965443 211 0 0123478888777664
No 116
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.74 E-value=2.9e-16 Score=173.79 Aligned_cols=223 Identities=20% Similarity=0.203 Sum_probs=164.3
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhh
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWF 240 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~ 240 (953)
..++|++|.--.-.. -..|...|+..|||..|++..++.+-.+|..+|.+|+++||||+.|..+.+.+. +.+++
T Consensus 61 ~~~idl~vVGPE~pL--~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~----a~ayi 134 (428)
T COG0151 61 EKNVDLVVVGPEAPL--VAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEE----AKAYI 134 (428)
T ss_pred HcCCCEEEECCcHHH--hhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHH----HHHHH
Confidence 347999998643211 124778999999999999999999999999999999999999999998885443 33444
Q ss_pred hhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc-C---CCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 241 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-G---IDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 241 ~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~-~---~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
+ +.+.|+||||....+++||.++.+.+|+.+++.+++.. . -..+|+||||++| .|+++.++-++.
T Consensus 135 ~-----~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~----- 203 (428)
T COG0151 135 D-----EKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDG-EEFSLQAFVDGK----- 203 (428)
T ss_pred H-----HcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccc-eEEEEEEEEcCC-----
Confidence 3 36779999999999999999999999999888877653 1 1257999999998 999999996432
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HHHHHHHHHhC-----CCCeeEe
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EGASLLFQRLG-----LCDFARI 389 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aLg-----~~G~arV 389 (953)
-+...|. .++....||-+.--..++ +.-..|++ +++++.+++. ++.....+.+- ++|+.-.
T Consensus 204 ~v~p~p~-----------aQDhKra~dgD~GPNTGG-MGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~ 271 (428)
T COG0151 204 TVIPMPT-----------AQDHKRAYDGDTGPNTGG-MGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYA 271 (428)
T ss_pred eEEECcc-----------ccccccccCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 2322221 112445666655544444 44455655 7888777766 77777666663 3455555
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCc
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~ 430 (953)
.++ ++++| |++||.|.+-|=-.+
T Consensus 272 glM-----------------lt~~G-PkViEfN~RFGDPEt 294 (428)
T COG0151 272 GLM-----------------LTADG-PKVIEFNARFGDPET 294 (428)
T ss_pred EEE-----------------EcCCC-cEEEEEecccCChhH
Confidence 554 48888 999999999885443
No 117
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.70 E-value=9.2e-16 Score=161.59 Aligned_cols=218 Identities=23% Similarity=0.261 Sum_probs=161.7
Q ss_pred hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 631 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 631 ~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
.++++|.+.|-+.--.-+ .+. -||..|.. +-|...|..++||+...+++. .+++|+||.+|....+.+
T Consensus 72 ~rekPd~IVpEiEAI~td--~L~-elE~~G~~-VVP~ArAt~ltMnRegiRrlA--AeeLglpTs~Y~fa~s~~------ 139 (394)
T COG0027 72 EREKPDYIVPEIEAIATD--ALV-ELEEEGYT-VVPNARATKLTMNREGIRRLA--AEELGLPTSKYRFADSLE------ 139 (394)
T ss_pred HhhCCCeeeehhhhhhHH--HHH-HHHhCCce-EccchHHHHhhhcHHHHHHHH--HHHhCCCCccccccccHH------
Confidence 467899998876321111 222 24678886 458889999999999999984 578999999998876533
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.+..+++ +|||+|||.-+.|+.|-+.|++.++++. |.+.+...- + ....++|||+||
T Consensus 140 --e~~~a~~~i-GfPcvvKPvMSSSGkGqsvv~~~e~ve~---AW~~A~~g~------R---------~~~~RVIVE~fv 198 (394)
T COG0027 140 --ELRAAVEKI-GFPCVVKPVMSSSGKGQSVVRSPEDVEK---AWEYAQQGG------R---------GGSGRVIVEEFV 198 (394)
T ss_pred --HHHHHHHHc-CCCeecccccccCCCCceeecCHHHHHH---HHHHHHhcC------C---------CCCCcEEEEEEe
Confidence 356677889 6999999999999999999999999985 677775431 1 125889999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+-+ .|+|.-.+..-+...+++..+-.... -.||.+.|+ |.. ++
T Consensus 199 ~fd------------------------~EiTlLtvr~~~~~~~Fc~PIGHrq~--dgdY~ESWQ--------P~~---mS 241 (394)
T COG0027 199 KFD------------------------FEITLLTVRAVDGTGSFCAPIGHRQE--DGDYRESWQ--------PQE---MS 241 (394)
T ss_pred cce------------------------EEEEEEEEEEecCCCCcCCCcccccC--CCChhcccC--------ccc---cC
Confidence 975 36666655543332223322222221 234555444 555 78
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+...++.+.+|+++.++||..|+..|++|+. .+++||.|+.++|-=|.
T Consensus 242 ~~al~~A~~IA~~vt~aLGG~GiFGVElfv~--gDeV~FsEVSPRPHDTG 289 (394)
T COG0027 242 EAALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEVIFSEVSPRPHDTG 289 (394)
T ss_pred HHHHHHHHHHHHHHHHhhcCccceeEEEEEe--CCEEEEeecCCCCCCCc
Confidence 9999999999999999999999999999998 46899999999997764
No 118
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.70 E-value=2.3e-15 Score=158.64 Aligned_cols=272 Identities=18% Similarity=0.141 Sum_probs=177.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
..||.+|..|-= |+.+.=++++.|.+|+.++--.+. |+..- ++....+.-+ ..+.
T Consensus 12 a~kvmLLGSGEL---------GKEvaIe~QRLG~eViAVDrY~~A------PAmqV----Ahrs~Vi~Ml------D~~a 66 (394)
T COG0027 12 ATKVMLLGSGEL---------GKEVAIEAQRLGVEVIAVDRYANA------PAMQV----AHRSYVIDML------DGDA 66 (394)
T ss_pred CeEEEEecCCcc---------chHHHHHHHhcCCEEEEecCcCCC------hhhhh----hhheeeeecc------CHHH
Confidence 458888875532 556667789999999866422221 11100 0000000000 0111
Q ss_pred HHh--hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHH-HHCCCCCCCeEEecCCccch
Q 002207 157 AEH--LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEM-SKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 157 ~~~--~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l-~~~Giptp~~~~~~~~~~~~ 233 (953)
... .+++||+++|-+.--. -| .+. -||..|...+ +...+..++||+...++++ ++.|+||.+|....+.++
T Consensus 67 l~avv~rekPd~IVpEiEAI~-td-~L~-elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e-- 140 (394)
T COG0027 67 LRAVVEREKPDYIVPEIEAIA-TD-ALV-ELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEE-- 140 (394)
T ss_pred HHHHHHhhCCCeeeehhhhhh-HH-HHH-HHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHH--
Confidence 111 2458999999985311 11 122 3577888754 6789999999999998875 569999999998876543
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHh--cCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL--EGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~--~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.+..+ .++|||+|||..++|+.|-+++++.+++.++...... .....+|+||+||+--.|+|.-.++.-+
T Consensus 141 --~~~a~~-----~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~ 213 (394)
T COG0027 141 --LRAAVE-----KIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVD 213 (394)
T ss_pred --HHHHHH-----HcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEec
Confidence 333332 3789999999999999999999999987655544332 2346799999999843455555554332
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
++. +.+-|.+- .+.-.||..-| .|..+++...++.+.+|.++..+||-+|+..|++
T Consensus 214 ~~~--~Fc~PIGH-------------rq~dgdY~ESW---------QP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVEl 269 (394)
T COG0027 214 GTG--SFCAPIGH-------------RQEDGDYRESW---------QPQEMSEAALEEAQSIAKRVTDALGGRGLFGVEL 269 (394)
T ss_pred CCC--CcCCCccc-------------ccCCCChhccc---------CccccCHHHHHHHHHHHHHHHHhhcCccceeEEE
Confidence 221 11111110 11223444444 4677999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCC
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 428 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t 428 (953)
|+ ...++||.|+-|+|.-|
T Consensus 270 fv------------------~gDeV~FsEVSPRPHDT 288 (394)
T COG0027 270 FV------------------KGDEVIFSEVSPRPHDT 288 (394)
T ss_pred EE------------------eCCEEEEeecCCCCCCC
Confidence 87 23469999999999754
No 119
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.70 E-value=6.2e-16 Score=186.10 Aligned_cols=301 Identities=17% Similarity=0.196 Sum_probs=213.1
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe----cCCc-------
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL----QGSE------- 230 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~----~~~~------- 230 (953)
..+|+|+..- |.-.||-.++++|...||-|+|++..++.-..||...-.+++.+|+||.||--- ...+
T Consensus 136 ~~VdAVWaGW-GHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~ 214 (2196)
T KOG0368|consen 136 TDVDAVWAGW-GHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVS 214 (2196)
T ss_pred cccceEeecc-cccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEe
Confidence 3799999875 456689999999999999999999999999999999999999999999987421 0000
Q ss_pred ---c--chh---hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 231 ---V--NES---ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 231 ---~--~~~---~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
+ .+. ..++-++. .+.++||+++|...|||++||.+|++.+|+.....+...+-.+..++|-+...+.|.+
T Consensus 215 Vpedly~Kacv~~~eegLea--ae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~~ARHl 292 (2196)
T KOG0368|consen 215 VPEDLYEKACVRNVEEGLEA--AEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLADQARHL 292 (2196)
T ss_pred cCHHHhhhhhcCCHHHHHHH--HHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhhCCCCceeeeecccCccee
Confidence 0 000 01111111 1348999999999999999999999999987666665555567899999999999999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHh
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRL 381 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aL 381 (953)
+|.++.|..||. +.+.-. ...+.....|. ....|+. -+.++.+++++.|.++.+-.
T Consensus 293 EVQlLaDqYGn~---IsLfgR--------------DCSiQRRhQKI------IEEAPatIap~etf~~Me~~AvrLak~V 349 (2196)
T KOG0368|consen 293 EVQLLADQYGNV---ISLFGR--------------DCSIQRRHQKI------IEEAPATIAPPETFKKMEQAAVRLAKLV 349 (2196)
T ss_pred eeehhhhhcCCE---eEeecc--------------cchHHHHHHHH------HhhCCcccCCHHHHHHHHHHHHHHHHhh
Confidence 999998777652 221111 11122222232 2335776 47889999999999999999
Q ss_pred CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCC--cch-----HH--HHHHHhCCCHHHHHHHHH
Q 002207 382 GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ--TSF-----LF--QQASKVGFSHSNILRTII 452 (953)
Q Consensus 382 g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~--~S~-----~p--~~a~~~G~s~~~ll~~li 452 (953)
|+.+.+.|++.+.| ++|++||||.||+-..+. |-+ +| |+.-++|+..-.+=+-=-
T Consensus 350 GYvSAGTVEYLYsp----------------~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~ 413 (2196)
T KOG0368|consen 350 GYVSAGTVEYLYSP----------------DDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRR 413 (2196)
T ss_pred cceecceEEEEEec----------------CCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHH
Confidence 99999999998853 479999999999877653 222 22 233466776544321111
Q ss_pred HHHhhhC-------CCCCCCCCcceecccccccCCCccccccCCCceEEEEecCCCcccceeccccHHHHH
Q 002207 453 GHACSRF-------PNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVW 516 (953)
Q Consensus 453 ~~a~~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~~s~~~v~ 516 (953)
-..+... .+.+.+.-.+|++-+|+.+++|++.|.|+.|+. ||+...|..+||
T Consensus 414 lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsEdPddgFkPSsG~v------------~eLnFrSssnvW 472 (2196)
T KOG0368|consen 414 LYGLEPTGDSPIDFENAKLPCPKGHCIAARITSEDPDDGFKPSSGTV------------QELNFRSSSNVW 472 (2196)
T ss_pred HcCCCCCCCCCCChhhccCCCCCceEEEEEeeccCCCCCcCCCCCee------------EEeccCCCCCee
Confidence 1111111 122333446899999999999999999988763 455666666665
No 120
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.69 E-value=4.6e-16 Score=187.33 Aligned_cols=199 Identities=20% Similarity=0.159 Sum_probs=130.8
Q ss_pred ChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcc
Q 002207 667 GVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 746 (953)
Q Consensus 667 ~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~ 746 (953)
+..+..+|+||..||++ |+++|||||++..+.+.+ +... ....+++||+||||.++++|.||+++.+..
T Consensus 466 S~ia~~i~~DK~~TK~i---L~~aGIPVP~g~~~~~~~-------~a~~-~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~ 534 (737)
T TIGR01435 466 NYVSPLIMENKVVTKKV---LAEAGFRVPFGDEFSSQA-------LALE-AFSLFENKAIVVKPKSTNYGLGITIFKNGF 534 (737)
T ss_pred cHHHHHHhcCHHHHHHH---HHHcCcCCCCEEEECCHH-------HHHH-HHHHhcCCCEEEeeCCCCCcCCeEEecCcC
Confidence 34456899999999999 999999999999886532 1112 223443599999999999999999998866
Q ss_pred cHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEc
Q 002207 747 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIG 826 (953)
Q Consensus 747 eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~ 826 (953)
+.+++.+|++.++++ +..+|||+||+|+ |++|.|++
T Consensus 535 ~~eel~~Al~~A~~~-------------------~~~VLVEefI~G~-------------------------EyRv~VIg 570 (737)
T TIGR01435 535 TLEDFQEALNIAFSE-------------------DSSVIIEEFLPGT-------------------------EYRFFVLN 570 (737)
T ss_pred CHHHHHHHHHHHHhc-------------------CCeEEEEecccCC-------------------------EEEEEEEC
Confidence 666677788888765 5789999999998 77777776
Q ss_pred CCCC--ceeeCceEEEec-----------CC-------------cc-------------ccccccccCCCceeEc-----
Q 002207 827 KCGS--MHSLMPSVTVKE-----------SG-------------DI-------------LSLEEKFQGGTGINLT----- 862 (953)
Q Consensus 827 ~~~~--~~~~~p~~~i~~-----------~~-------------~~-------------~d~~~Ky~~g~~~~~~----- 862 (953)
++-- ....++.+.=.. +. .+ |++++=-..|....+.
T Consensus 571 ~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNl 650 (737)
T TIGR01435 571 DKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNV 650 (737)
T ss_pred CeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcc
Confidence 5310 000111110000 00 00 0000000001111000
Q ss_pred --CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCC-------CcEEEEeeCCCCCCCCC
Q 002207 863 --PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-------GEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 863 --P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~-------g~~~viEINt~PGlt~~ 921 (953)
-....++++++....+++|.++++++|+. ++.||+++..-+ ....|||+|..|||.-+
T Consensus 651 stGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~mH 717 (737)
T TIGR01435 651 STGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMHMH 717 (737)
T ss_pred cCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCCccccccceEEEEEcCCcchhhh
Confidence 00011456788899999999999999997 999999985311 12468999999999765
No 121
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.69 E-value=1.5e-15 Score=175.26 Aligned_cols=232 Identities=21% Similarity=0.266 Sum_probs=174.0
Q ss_pred ccChHHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE
Q 002207 621 RHSINEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV 699 (953)
Q Consensus 621 ~~~~~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~ 699 (953)
.++.++.+..++ ...|.+.|.. |...|+-....-|...||-|+||.+......-||...+.. ..++|+|+.|..-
T Consensus 66 YL~IdeII~iAk~~gaDaIhPGY-GfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~---A~~agvPvipgt~ 141 (1149)
T COG1038 66 YLSIDEIIRIAKRSGADAIHPGY-GFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNA---AIKAGVPVIPGTD 141 (1149)
T ss_pred hccHHHHHHHHHHcCCCeecCCc-ccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHH---HHHcCCCccCCCC
Confidence 345667776655 3567766654 6677999999999999999999999999999999999998 8999999987532
Q ss_pred EeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCC
Q 002207 700 RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNP 779 (953)
Q Consensus 700 v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~ 779 (953)
-... . .+...++.++. +||++||.+.+|+++|+.+|.+.++|.+ +++.+.+.. ..+.|
T Consensus 142 ~~~~-----~-~ee~~~fa~~~-gyPvmiKA~~GGGGRGMR~vr~~~~l~~---~~~~AksEA-----kaAFG------- 199 (1149)
T COG1038 142 GPIE-----T-IEEALEFAEEY-GYPVMIKAAAGGGGRGMRVVRSEADLAE---AFERAKSEA-----KAAFG------- 199 (1149)
T ss_pred CCcc-----c-HHHHHHHHHhc-CCcEEEEEccCCCccceeeecCHHHHHH---HHHHHHHHH-----HHhcC-------
Confidence 1111 1 24456777888 6999999999999999999999999986 344433220 01122
Q ss_pred CCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCc-eeeCceEEEecCCccccccccccCCCc
Q 002207 780 PPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM-HSLMPSVTVKESGDILSLEEKFQGGTG 858 (953)
Q Consensus 780 ~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~-~~~~p~~~i~~~~~~~d~~~Ky~~g~~ 858 (953)
++.+.||+||+.. +.++|.++++.... +.+. +- .-.+-.-.. ..
T Consensus 200 -~~eVyvEk~ve~p------------------------kHIEVQiLgD~~GnvvHLf---ER--DCSvQRRhQ-----KV 244 (1149)
T COG1038 200 -NDEVYVEKLVENP------------------------KHIEVQILGDTHGNVVHLF---ER--DCSVQRRHQ-----KV 244 (1149)
T ss_pred -CCcEEhhhhhcCc------------------------ceeEEEEeecCCCCEEEEe---ec--ccchhhccc-----ee
Confidence 6889999999987 59999999986432 2221 10 000111111 23
Q ss_pred eeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCC
Q 002207 859 INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 916 (953)
Q Consensus 859 ~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~P 916 (953)
..+.|++ .+++++.++|.+.|.++++..|..+...++|.++. +|++|||||||+=
T Consensus 245 VE~APa~--~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~-~~~fyFIEvNPRi 299 (1149)
T COG1038 245 VEVAPAP--YLSPELRDEICDDAVKLARNIGYINAGTVEFLVDE-DGKFYFIEVNPRI 299 (1149)
T ss_pred EEecCCC--CCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcC-CCcEEEEEecCce
Confidence 4566776 48999999999999999999999999999999995 6899999999743
No 122
>PRK06849 hypothetical protein; Provisional
Probab=99.69 E-value=6.9e-16 Score=177.99 Aligned_cols=203 Identities=14% Similarity=0.089 Sum_probs=138.7
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
++.+|+|+|..... .........|+. ++...+++..+...|.||..++++ ++++|||+|+++.+.+.+
T Consensus 74 ~~~id~vIP~~e~~-~~~a~~~~~l~~-~~~v~~~~~~~~~~~~DK~~~~~~---~~~~GipvP~t~~v~~~~------- 141 (389)
T PRK06849 74 RENIDLLIPTCEEV-FYLSHAKEELSA-YCEVLHFDFELLLLLHNKWEFAEQ---ARSLGLSVPKTYLITDPE------- 141 (389)
T ss_pred HcCCCEEEECChHH-HhHHhhhhhhcC-CcEEEcCCHHHHHHhhCHHHHHHH---HHHcCCCCCCEEEeCCHH-------
Confidence 35689999987432 222222233332 456678999999999999999999 999999999999887533
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++..+..+||+|+||..+++|.|+.++.+.+.+. ... . ....++||||||+
T Consensus 142 -~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~-------~~~-~-----------------~~~~~~ivQe~I~ 195 (389)
T PRK06849 142 -AIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALK-------ELP-I-----------------SKDNPWVMQEFIQ 195 (389)
T ss_pred -HHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhc-------ccc-c-----------------CCCCCeEEEEEec
Confidence 1233333332599999999999999999987733222 110 0 1135699999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCcccccccccc--CCCceeEcCCCCCCC
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ--GGTGINLTPPPASIM 869 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~--~g~~~~~~P~~~~~l 869 (953)
|. |+++..+..+|...... . |...|. ++......|..
T Consensus 196 G~-------------------------e~~~~~~~~~G~v~~~~-~-----------~~~~~~~~~~~~~~~~~~~---- 234 (389)
T PRK06849 196 GK-------------------------EYCSYSIVRSGELRAHS-C-----------YKPEYCAGSGAQIAFQPIN---- 234 (389)
T ss_pred CC-------------------------eEEEEEEEECCEEEEEE-E-----------eeccccCCCCceeEeEECC----
Confidence 97 77776666555533211 0 011111 12222233322
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 918 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGl 918 (953)
.+++++.+++++++||+.|++.+||+++. +|++|+||||++++-
T Consensus 235 ----~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g~~~~iEiNpR~~~ 278 (389)
T PRK06849 235 ----HPRIEEFVTHFVKELNYTGQISFDFIETE-NGDAYPIECNPRTTS 278 (389)
T ss_pred ----cHHHHHHHHHHHHhcCceeEEEEEEEECC-CCCEEEEEecCCCCc
Confidence 24788999999999999999999999984 799999999987763
No 123
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.69 E-value=2.3e-16 Score=163.67 Aligned_cols=184 Identities=18% Similarity=0.164 Sum_probs=93.4
Q ss_pred hccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhH
Q 002207 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282 (953)
Q Consensus 203 ~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~ 282 (953)
|.||..+.++|+++|||+|++.++.+.+. +.+++++++ ++|+|+||..++.|.||.++++.+++...+....
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~~~~~----~~~~~~~~~----~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~ 72 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTNSPEE----AKEFIEELG----GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFK 72 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEESSHHH----HHHHHHHH------SSEEEE-SB-------EEEESHCHHHHHHH---
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEECCHHH----HHHHHHHhc----CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHH
Confidence 56999999999999999999999876542 344444321 6899999999999999999999988765544321
Q ss_pred hcCCCCcEEEeccCCCC--eEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC
Q 002207 283 LEGIDDRVVVELFLEGG--SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 360 (953)
Q Consensus 283 ~~~~~~~vlVEefI~Gg--~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa 360 (953)
.....+++|+||+.. ++++|.|++ +. .+. . +.... .--||+..+..++. ..|.
T Consensus 73 --~~~~~~~~Q~fI~~~~g~d~Rv~Vig----~~--vv~--a--~~r~~----------~~~d~r~n~~~g~~---~~~~ 127 (190)
T PF08443_consen 73 --RLENPILVQEFIPKDGGRDLRVYVIG----GK--VVG--A--YRRSS----------PEGDFRTNLSRGGK---VEPY 127 (190)
T ss_dssp ----TTT-EEEE----SS---EEEEEET----TE--EEE--E--EE-------------------------------EE-
T ss_pred --hccCcceEeccccCCCCcEEEEEEEC----CE--EEE--E--EEEec----------CcccchhhhccCce---EEEe
Confidence 245688999999642 699999994 21 221 1 11111 11255655554442 2344
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHh
Q 002207 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV 440 (953)
Q Consensus 361 ~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~ 440 (953)
.+++ ++.+.|.++.++||+. ++.||++ +.++.+||+|||+.||+... .+.+
T Consensus 128 ~l~~----e~~~~a~~~~~~lgl~-~~giDi~------------------~~~~~~~v~EvN~~~~~~~~------~~~~ 178 (190)
T PF08443_consen 128 DLPE----EIKELALKAARALGLD-FAGIDIL------------------DTNDGPYVLEVNPNPGFRGI------EEAT 178 (190)
T ss_dssp ---H----HHHHHHHHHHHHTT-S-EEEEEEE------------------EETTEEEEEEEETT---TTH------HHHH
T ss_pred cCCH----HHHHHHHHHHHHhCCC-EEEEEEE------------------ecCCCeEEEEecCCchHhHH------HHHH
Confidence 5665 4578899999999985 9999953 34556999999999998752 2467
Q ss_pred CCCHHHHH
Q 002207 441 GFSHSNIL 448 (953)
Q Consensus 441 G~s~~~ll 448 (953)
|++..+.+
T Consensus 179 g~~i~~~i 186 (190)
T PF08443_consen 179 GIDIAEEI 186 (190)
T ss_dssp ---HHHHH
T ss_pred CcCHHHHH
Confidence 88754433
No 124
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.68 E-value=3.6e-16 Score=162.24 Aligned_cols=174 Identities=22% Similarity=0.325 Sum_probs=92.3
Q ss_pred hcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHH
Q 002207 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753 (953)
Q Consensus 674 ~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~ 753 (953)
+.||..+.++ |+++|||+|++.++.+.+ .+.++.++++++|+|+||..++++.||.++++.+++..+.+
T Consensus 1 a~dK~~~~~~---l~~~gipvP~t~~~~~~~--------~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 1 AEDKLLTLQL---LAKAGIPVPETRVTNSPE--------EAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLD 69 (190)
T ss_dssp -HBHHHHHHH---HHHTT-----EEEESSHH--------HHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH
T ss_pred CCCHHHHHHH---HHHCCcCCCCEEEECCHH--------HHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHH
Confidence 3599999998 999999999999887643 23445556634999999999999999999999999886433
Q ss_pred HHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCcee
Q 002207 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 833 (953)
Q Consensus 754 al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~ 833 (953)
++... ...+++|+||+.. .| +|+.|.|+++.
T Consensus 70 ~~~~~----------------------~~~~~~Q~fI~~~------------------~g----~d~Rv~Vig~~----- 100 (190)
T PF08443_consen 70 AFKRL----------------------ENPILVQEFIPKD------------------GG----RDLRVYVIGGK----- 100 (190)
T ss_dssp ---------------------------TTT-EEEE----S------------------S-------EEEEEETTE-----
T ss_pred HHHhc----------------------cCcceEeccccCC------------------CC----cEEEEEEECCE-----
Confidence 32211 4678999999864 01 38999999875
Q ss_pred eCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeC
Q 002207 834 LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 913 (953)
Q Consensus 834 ~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEIN 913 (953)
+...++..... -+|....+.|.. ..|.. ++ +++++.|.+++++||+. ++.||++-+ ++++||+|||
T Consensus 101 vv~a~~r~~~~--~d~r~n~~~g~~--~~~~~---l~----~e~~~~a~~~~~~lgl~-~~giDi~~~--~~~~~v~EvN 166 (190)
T PF08443_consen 101 VVGAYRRSSPE--GDFRTNLSRGGK--VEPYD---LP----EEIKELALKAARALGLD-FAGIDILDT--NDGPYVLEVN 166 (190)
T ss_dssp EEEEEE----------------------EE-----------HHHHHHHHHHHHHTT-S-EEEEEEEEE--TTEEEEEEEE
T ss_pred EEEEEEEecCc--ccchhhhccCce--EEEec---CC----HHHHHHHHHHHHHhCCC-EEEEEEEec--CCCeEEEEec
Confidence 33333322222 134444443432 22322 23 46788999999999986 999996554 4679999999
Q ss_pred CCCCCCCC
Q 002207 914 TVPGMTPS 921 (953)
Q Consensus 914 t~PGlt~~ 921 (953)
+.||+...
T Consensus 167 ~~~~~~~~ 174 (190)
T PF08443_consen 167 PNPGFRGI 174 (190)
T ss_dssp TT---TTH
T ss_pred CCchHhHH
Confidence 99999864
No 125
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.68 E-value=1.1e-16 Score=161.50 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=83.5
Q ss_pred hccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhH
Q 002207 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII 282 (953)
Q Consensus 203 ~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~ 282 (953)
|.||+++.+.|+++|||+|..+..... ....+|+|+||..|.||.||.++++.+++.....
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~----------------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~--- 61 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEP----------------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLN--- 61 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EES----------------S--SSSEEEEESS-------B--SS--TTE-------
T ss_pred CCCHHHHHHHHHccCCCCCCccccccc----------------cccCCcEEEEeCCCCCCCCeEEECCchhhccccc---
Confidence 679999999999999999933222111 1246799999999999999999999887543322
Q ss_pred hcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCC
Q 002207 283 LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF 362 (953)
Q Consensus 283 ~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l 362 (953)
...++|+||+| .++++.++.++ +....+...+-.+.. ...-| .|. ....|+..
T Consensus 62 -----~~~i~Qe~i~G-~~~Sv~~l~~~----~~~~~l~~~rq~i~~--------~~~~~----~~~-----G~~~~~~~ 114 (161)
T PF02655_consen 62 -----KLRIVQEFIEG-EPYSVSFLASG----GGARLLGVNRQLIGN--------DDGRF----RYC-----GGIVPADT 114 (161)
T ss_dssp --------EEEE---S-EEEEEEEEE-S----SSEEEEEEEEEEEET------------T----EEE-----EEEES---
T ss_pred -----cceEEeeeeCC-EEeEEEEEEeC----CceEEEEechHhhcc--------cccee----eec-----ccccccCC
Confidence 12299999998 99999999643 223333333222211 00001 121 12345543
Q ss_pred CHHHHHHHHHHHHHHHHHh-CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 363 PIVVINSIREGASLLFQRL-GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 363 ~~~~~~~i~~~a~~~~~aL-g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
+ ...++++++.+++++| |+.|+..|||++ + ++.+||+||||+++
T Consensus 115 ~--~~~~~~~~~~~i~~~l~gl~G~~giD~I~-----------------~-~~~~~viEINPR~t 159 (161)
T PF02655_consen 115 P--LKEEIIELARRIAEALPGLRGYVGIDFIL-----------------D-DGGPYVIEINPRFT 159 (161)
T ss_dssp ---HHHHHHHHHHHHHTTSTT--EEEEEEEEE-----------------S-S-SEEEEEEESS--
T ss_pred c--hHHHHHHHHHHHHHHcCCCeeeEeEEEEE-----------------e-CCcEEEEEEcCCCC
Confidence 3 3788999999999999 999999999986 3 47799999999886
No 126
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.68 E-value=3.8e-15 Score=167.32 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=155.0
Q ss_pred EEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHH
Q 002207 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 718 (953)
Q Consensus 639 f~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~ 718 (953)
+.+.||....--....+ +.+++|+.| +..+..++.||..+|++ |+++|||+|+++ ...
T Consensus 88 iiIp~gs~v~y~~~d~l-~~~~~p~~g-n~~~l~~e~dK~~~k~~---L~~aGIp~p~~~--~~~--------------- 145 (358)
T PRK13278 88 ILIPHGSFVAYLGLENV-EKFKVPMFG-NREILRWEADRDKERKL---LEEAGIRIPRKY--ESP--------------- 145 (358)
T ss_pred EEEeCCCcceeecHHHH-HHCCCCcCC-CHHHHHHhcCHHHHHHH---HHHcCCCCCCEe--CCH---------------
Confidence 45566765542234555 489999777 67789999999999998 899999999962 221
Q ss_pred hhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccc
Q 002207 719 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 798 (953)
Q Consensus 719 ~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~ 798 (953)
+.+ .||+||||..+.+|.|++++++.+|+.+ +++..... +.++ ..+.++|||||.|.
T Consensus 146 ~~i-~~PvIVKp~~g~ggkGv~i~~s~~El~~---~~~~l~~~---~~~~-----------~~~~~iIEEfI~G~----- 202 (358)
T PRK13278 146 EDI-DRPVIVKLPGAKGGRGYFIAKSPEEFKE---KIDKLIER---GLIT-----------EVEEAIIQEYVVGV----- 202 (358)
T ss_pred HHc-CCCEEEEeCCCCCCCCeEEeCCHHHHHH---HHHHHHhc---cccC-----------CCCeEEEEecCCCc-----
Confidence 134 5899999999999999999999999875 45554321 0000 14789999999998
Q ss_pred cccccccchhhhhcCCCceeEEEEEEEcC--CCCceeeCceEEEecC-Ccccccccccc----CCC---ceeEcCCCCCC
Q 002207 799 SQSTNKNADRLMWKGNSRWVEITVGVIGK--CGSMHSLMPSVTVKES-GDILSLEEKFQ----GGT---GINLTPPPASI 868 (953)
Q Consensus 799 ~~~~~~~~~~~~~~g~~~~~Eitv~vl~~--~~~~~~~~p~~~i~~~-~~~~d~~~Ky~----~g~---~~~~~P~~~~~ 868 (953)
|+++.++-. ++....+....++..+ ..++..-++-+ ... .....|+.
T Consensus 203 --------------------e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~--- 259 (358)
T PRK13278 203 --------------------PYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVV--- 259 (358)
T ss_pred --------------------EEEEEEEEeccCCeEEEEeeceeeeecccceeeccchhhhhcccCCceeEecceecc---
Confidence 777776653 2332222222222221 12222211110 000 01124554
Q ss_pred CCHHHHHHHHHHHHHHHHH----c--CCcceEEEEEEEEcCCCcEEEEeeCCCC-CCCC----CchHHHHHHhcCCCCCH
Q 002207 869 MSTEALDKCKQRIELIANA----L--QLEGFSRIDAFVNVDNGEVLIIEVNTVP-GMTP----STVLIHQALSEQPPMYP 937 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~a----L--g~~G~ariDf~v~~~~g~~~viEINt~P-Glt~----~S~l~~~a~~~~~~~yp 937 (953)
+.+.++.++.+.++++.++ + ++.|...+|+++++ ++++||+|||+++ |=|. .|++..... +-+|+.
T Consensus 260 ~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~-d~~~~V~Eis~R~~ggtn~~~~~s~y~~~~~--~~~~~~ 336 (358)
T PRK13278 260 LRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTD-NLEIVVFEISARIVAGTNLYMNGSPYSYLYW--DEPMSM 336 (358)
T ss_pred chHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcC-CCCEEEEEEeCcccCCccceeCCCcchheec--CCcccH
Confidence 5788888999999988888 4 77899999999985 7899999999988 6333 343222111 112333
Q ss_pred HHHHHHHHHHHhh
Q 002207 938 HQFFRKVLDLGSE 950 (953)
Q Consensus 938 ~~l~~~li~~a~~ 950 (953)
-.-+.+=|++|++
T Consensus 337 grria~ei~~a~~ 349 (358)
T PRK13278 337 GRRIAREIKLALE 349 (358)
T ss_pred HHHHHHHHHHHHh
Confidence 3445555677765
No 127
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.68 E-value=1.6e-15 Score=153.60 Aligned_cols=163 Identities=26% Similarity=0.277 Sum_probs=120.2
Q ss_pred HHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCC-CCCCcceEEeCCcccHHHHHHHHHHHHhhCCCC
Q 002207 687 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR-DGCSTGVARLCCAEDLTVYVKALEECLLRIPPN 765 (953)
Q Consensus 687 l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~-~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~ 765 (953)
|+++|||||+|..+.+.+ .+..+.+++ +||+|+|+.. +..++|..++++.+|+.. +.+.. .
T Consensus 1 l~~~gip~~~~~~i~~~~--------~l~~a~~~i-G~P~vlK~~~~GYDGkGq~~i~~~~dl~~---a~~~~-~----- 62 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLE--------DLEEAAESI-GFPAVLKTRRGGYDGKGQFVIRSEEDLEK---AWQEL-G----- 62 (172)
T ss_dssp HHHTT--B-EEEEESSHH--------HHHHHHHHH-TSSEEEEESSSSCTTTTEEEESSGGGHHH---HHHHT-T-----
T ss_pred CcccCCCCCCeEEECCHH--------HHHHHHHHc-CCCEEEEccCcCcCCCccEEECCHHHHHH---HHHhc-C-----
Confidence 578999999999998743 355666788 6999999654 557899999999999985 33332 1
Q ss_pred CcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCc
Q 002207 766 SFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 845 (953)
Q Consensus 766 ~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~ 845 (953)
...+|+|+||+-. +|+++-+..+..+.....|..+....++
T Consensus 63 ---------------~~~~ilE~~v~f~------------------------~EiSvivaR~~~G~~~~yp~~en~~~~~ 103 (172)
T PF02222_consen 63 ---------------GGPCILEEFVPFD------------------------REISVIVARDQDGEIRFYPPVENVHRDG 103 (172)
T ss_dssp ---------------TSCEEEEE---ES------------------------EEEEEEEEEETTSEEEEEEEEEEEEETT
T ss_pred ---------------CCcEEEEeccCCc------------------------EEEEEEEEEcCCCCEEEEcCceEEEECC
Confidence 5789999999986 6999999987655444556655443333
Q ss_pred cccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCc-EEEEeeCCCCCCCC
Q 002207 846 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE-VLIIEVNTVPGMTP 920 (953)
Q Consensus 846 ~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~-~~viEINt~PGlt~ 920 (953)
+++ ..+.|++ +++++.++++++|.+++++|+..|+.-|+||++. +|+ +||+||.|+|--+.
T Consensus 104 il~----------~s~~Pa~---i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~-~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 104 ILH----------ESIAPAR---ISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTK-DGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp EEE----------EEEESCS---S-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEET-TSTEEEEEEEESS--GGG
T ss_pred EEE----------EEECCCC---CCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEec-CCCEEEEEeccCCccCcc
Confidence 332 3367887 6899999999999999999999999999999996 687 99999999886543
No 128
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.67 E-value=2.6e-15 Score=183.87 Aligned_cols=211 Identities=16% Similarity=0.078 Sum_probs=129.1
Q ss_pred EECCCHHHHHH-hccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeC-
Q 002207 192 FVGTGSRACRQ-AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY- 269 (953)
Q Consensus 192 yvGs~~~a~~i-~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~- 269 (953)
+++.++..+.. |.||..||++|+++|||||++..+.+.+. +...+.. ..+||+||||..+++|+||+++.
T Consensus 474 ~t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~e~----a~~~~~~----~~g~PvVVKP~~g~~G~GV~~~~~ 545 (752)
T PRK02471 474 MTSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSLEE----ALADYSL----FADKAIVVKPKSTNFGLGISIFKE 545 (752)
T ss_pred ccCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCHHH----HHHHHHH----hcCCCEEEEECCCCCcCCeEEecC
Confidence 34555554444 55999999999999999999998865432 2122211 14789999999999999999864
Q ss_pred --CHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEE---eccCccccc------cC
Q 002207 270 --GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL---QFQGSVDVR------EK 338 (953)
Q Consensus 270 --~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~---~~~~~~~~~------~~ 338 (953)
+.+++.++...++ .+++.+||||||+| +||+|.|++ +. .+ ...+++. ..+|...|. ..
T Consensus 546 ~~~~eel~~A~~~a~--~~~~~vlVEEfI~G-~E~Rv~Vig----gk--vv--aa~~R~pa~V~GDG~~tI~eLi~~~n~ 614 (752)
T PRK02471 546 PASLEDYEKALEIAF--REDSSVLVEEFIVG-TEYRFFVLD----GK--VE--AVLLRVPANVVGDGIHTVRELVAQKNQ 614 (752)
T ss_pred cCCHHHHHHHHHHHH--hcCCcEEEEecccC-CEEEEEEEC----CE--EE--EEEEEeCCccccCcHhhHHHHHHHhcC
Confidence 5677766665544 36778999999998 999999994 21 11 1111111 111111110 00
Q ss_pred Cc----c----------------------cccccCccCCCceEEE----------cCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 339 DA----I----------------------FNYRRKYLPTQQVAYH----------TPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 339 ~~----~----------------------~dy~~Ky~~~~~~~~~----------~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+. . ++++.--..|. ..+. .+.++++.+.....++|.++++++|
T Consensus 615 ~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge-~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~ig 693 (752)
T PRK02471 615 DPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGE-IVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALG 693 (752)
T ss_pred CccccCcccccccccccCHHHHHHHHHcCCCccccCCCCC-EEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcC
Confidence 00 0 00000000011 1111 1124566777888999999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccC-CcEEEEeecCCCCCCCcchHH
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEW-GTILFTDINLISGMEQTSFLF 434 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~d-G~~~~lEIN~~PG~t~~S~~p 434 (953)
+. ++.||+++-+-+ .. .+++ .+..|+|||..||+.-+ .||
T Consensus 694 l~-~~GvDii~~di~--------~p--~~~~~~~~~IiEvN~~P~l~mH-~~P 734 (752)
T PRK02471 694 AK-ICGVDLIIPDLT--------QP--ASPEHPNYGIIELNFNPAMYMH-CFP 734 (752)
T ss_pred CC-EEEEEEEeCCCc--------cc--ccccCCCeEEEEecCCCchhhc-cCc
Confidence 87 889999862110 00 0112 14678999999998653 445
No 129
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.67 E-value=1.3e-15 Score=186.32 Aligned_cols=198 Identities=22% Similarity=0.184 Sum_probs=132.1
Q ss_pred EeCCChHHHHHhc-ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEE
Q 002207 663 YTGPGVMASKTCM-DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 741 (953)
Q Consensus 663 y~G~~~~as~l~~-DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~ 741 (953)
+++.+...+..++ ||..||++ |+++|||||++..+.+.+ +....+ ..+.+||+||||.++++|.||++
T Consensus 474 ~t~~~s~~s~~~~~DK~~tk~l---L~~~GIpvP~~~~~~~~e-------~a~~~~-~~~~g~PvVVKP~~g~~G~GV~~ 542 (752)
T PRK02471 474 MTSKDNYISPLIMENKVVTKKI---LAEAGFPVPAGDEFTSLE-------EALADY-SLFADKAIVVKPKSTNFGLGISI 542 (752)
T ss_pred ccCCCHHHHHHHhhCHHHHHHH---HHHCCcCCCCEEEEcCHH-------HHHHHH-HHhcCCCEEEEECCCCCcCCeEE
Confidence 5677777555555 99999999 999999999998886432 222222 33326999999999999999999
Q ss_pred eCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEE
Q 002207 742 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEIT 821 (953)
Q Consensus 742 v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eit 821 (953)
+.+.++.+++.+|++.++++ +..+||||||+|+ |++
T Consensus 543 ~~~~~~~eel~~A~~~a~~~-------------------~~~vlVEEfI~G~-------------------------E~R 578 (752)
T PRK02471 543 FKEPASLEDYEKALEIAFRE-------------------DSSVLVEEFIVGT-------------------------EYR 578 (752)
T ss_pred ecCcCCHHHHHHHHHHHHhc-------------------CCcEEEEecccCC-------------------------EEE
Confidence 88777777777888887755 5779999999998 666
Q ss_pred EEEEcCCCCceeeCceEEEec----CCcc-----------------------------------------ccccccccCC
Q 002207 822 VGVIGKCGSMHSLMPSVTVKE----SGDI-----------------------------------------LSLEEKFQGG 856 (953)
Q Consensus 822 v~vl~~~~~~~~~~p~~~i~~----~~~~-----------------------------------------~d~~~Ky~~g 856 (953)
|.|+++. +.+.++..+ .++. |++++=-..|
T Consensus 579 v~Viggk-----vvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~G 653 (752)
T PRK02471 579 FFVLDGK-----VEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKG 653 (752)
T ss_pred EEEECCE-----EEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCC
Confidence 6666432 111111100 0000 0000000011
Q ss_pred CceeEcC-------CCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcC-----CC--cEEEEeeCCCCCCCCC
Q 002207 857 TGINLTP-------PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD-----NG--EVLIIEVNTVPGMTPS 921 (953)
Q Consensus 857 ~~~~~~P-------~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~-----~g--~~~viEINt~PGlt~~ 921 (953)
....+.. ....++++.+...++++|.++++++|+. ++.||+++..- .. ...|||||..|||.-+
T Consensus 654 e~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH 731 (752)
T PRK02471 654 EIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMYMH 731 (752)
T ss_pred CEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeCCCcccccccCCCeEEEEecCCCchhhc
Confidence 1111111 0011356788899999999999999988 88899998631 11 5678999999999654
No 130
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.67 E-value=1.5e-15 Score=183.06 Aligned_cols=210 Identities=18% Similarity=0.167 Sum_probs=130.1
Q ss_pred CHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCC---HH
Q 002207 196 GSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VI 272 (953)
Q Consensus 196 ~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~---~~ 272 (953)
+..+..+|+||..||++|+++|||||++..+.+.+.. ...+..+ .++|+||||.++++|+||+++.+ .+
T Consensus 466 S~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~~~a----~~~~~~~----~g~PVVVKP~~g~~G~GVsi~~~~~~~e 537 (737)
T TIGR01435 466 NYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQALA----LEAFSLF----ENKAIVVKPKSTNYGLGITIFKNGFTLE 537 (737)
T ss_pred cHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHHHH----HHHHHHh----cCCCEEEeeCCCCCcCCeEEecCcCCHH
Confidence 4456689999999999999999999999988664321 1112111 26799999999999999999876 56
Q ss_pred HHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEE-ecceEEEEeccCccccc------cCC------
Q 002207 273 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV-LLPTEVELQFQGSVDVR------EKD------ 339 (953)
Q Consensus 273 el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~-l~~~ei~~~~~~~~~~~------~~~------ 339 (953)
++.++...++ .++..+|||+||+| +||+|.|++ +...+++ ..|..|+ .+|...|. ..+
T Consensus 538 el~~Al~~A~--~~~~~VLVEefI~G-~EyRv~VIg----~kvvaa~~R~Pa~Vi--GDG~~TI~eLI~~kN~~p~Rg~~ 608 (737)
T TIGR01435 538 DFQEALNIAF--SEDSSVIIEEFLPG-TEYRFFVLN----DKVEAVLLRVPANVT--GDGIHTVRELVAEKNTDPLRGTD 608 (737)
T ss_pred HHHHHHHHHH--hcCCeEEEEecccC-CEEEEEEEC----CeEEEEEEECCCCEE--ECCHHHHHHHHHHhccCcccCCc
Confidence 6665555444 36778999999998 999999995 2211111 1111121 22221110 000
Q ss_pred ------cc-------------cccccCccCCCceEEE----------cCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 340 ------AI-------------FNYRRKYLPTQQVAYH----------TPPRFPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 340 ------~~-------------~dy~~Ky~~~~~~~~~----------~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
.+ |+.+.--..|. ..+. .+.++++++-...+++|.++++++|+. ++.||
T Consensus 609 ~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge-~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVD 686 (737)
T TIGR01435 609 HRKPLEKITGPEETLMLKEQGLTIDSIPKKEQ-IVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVD 686 (737)
T ss_pred ccCCcccccchHHHHHHHHcCCCccccCCCCC-EEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEE
Confidence 00 00000000010 0000 112456677778899999999999996 99999
Q ss_pred eeecCCCCccccccccccCcccC-CcEEEEeecCCCCCCCcchHHH
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEW-GTILFTDINLISGMEQTSFLFQ 435 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~d-G~~~~lEIN~~PG~t~~S~~p~ 435 (953)
+++-+.+ .. .+++ ....|||+|..|||..+ .||.
T Consensus 687 ii~~di~--------~p--~~~~~~~~~iiEvN~~P~l~mH-~~P~ 721 (737)
T TIGR01435 687 LIIPDET--------IP--DTDKHAIWGVIEANFNPAMHMH-CFPY 721 (737)
T ss_pred EEecCCC--------CC--ccccccceEEEEEcCCcchhhh-cCCC
Confidence 9862110 00 0111 23678999999998754 3453
No 131
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.65 E-value=1.1e-14 Score=161.36 Aligned_cols=225 Identities=16% Similarity=0.225 Sum_probs=166.2
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
..+|++|+-=.-.. .. -|-..|+..|||..||+..++++-.+|.++|++ |+++||||+.|..+++.+
T Consensus 62 ~~idl~vVGPE~pL-~~-GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~f---m~k~~IPta~y~~f~~~e-------- 128 (428)
T COG0151 62 KNVDLVVVGPEAPL-VA-GVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDF---MKKYGIPTAEYEVFTDPE-------- 128 (428)
T ss_pred cCCCEEEECCcHHH-hh-hhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHH---HHHcCCCcccccccCCHH--------
Confidence 46788886421111 12 355788999999999999999999999999999 999999999999887432
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.......+. +.|++|||.....+.||.++.+.++.. +++.+.+.. +.+. ....+++||||++|
T Consensus 129 ~a~ayi~~~-g~piVVKadGLaaGKGV~V~~~~eeA~---~a~~~~l~~---~~fg----------~~g~~VVIEEfL~G 191 (428)
T COG0151 129 EAKAYIDEK-GAPIVVKADGLAAGKGVIVAMTLEEAE---AAVDEMLEG---NAFG----------SAGARVVIEEFLDG 191 (428)
T ss_pred HHHHHHHHc-CCCEEEecccccCCCCeEEcCCHHHHH---HHHHHHHhh---cccc----------CCCCcEEEEecccc
Confidence 245566778 699999999999999999998755544 466665532 0111 11367999999999
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
. |+|+-++.++.....+++. ......|+-+.--+.|.+..+.|+|. ++++
T Consensus 192 e-------------------------E~S~~a~~DG~~v~p~p~a---QDhKra~dgD~GPNTGGMGaysp~P~--~t~e 241 (428)
T COG0151 192 E-------------------------EFSLQAFVDGKTVIPMPTA---QDHKRAYDGDTGPNTGGMGAYSPAPF--ITDE 241 (428)
T ss_pred e-------------------------EEEEEEEEcCCeEEECccc---cccccccCCCCCCCCCCCCCCCCCCC--CCHH
Confidence 8 9999999986554444322 22344666665556666677888875 7898
Q ss_pred HHHHHH-HHHHHHHHHcC-----CcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 873 ALDKCK-QRIELIANALQ-----LEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 873 ~~~~i~-~~a~~~~~aLg-----~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+.+++. ++.+...+.|. ..|+....|++++ +| ++|||.|.+=|=-
T Consensus 242 ~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~-~G-PkViEfN~RFGDP 292 (428)
T COG0151 242 VVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTA-DG-PKVIEFNARFGDP 292 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcC-CC-cEEEEEecccCCh
Confidence 888877 66666666552 4688999999995 56 9999999876643
No 132
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.65 E-value=1.7e-14 Score=159.36 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=185.6
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCC--CCCccccccccccccCcc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNT--PADFDFKLESLAQGFGSL 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (953)
+.++|+.|+ -.||.+|++-.+.+|++.+++- ..|+.- .|... ..|--+.++ .|..+
T Consensus 16 ~~~~i~t~~----------SHsal~i~~gAk~egf~t~~v~--~~~r~~------~Y~~f~~~~d~~i~~~----~f~~~ 73 (366)
T PRK13277 16 DKVKIGVLA----------SHSALDVFDGAKDEGFRTIAVC--QKGRER------TYREFKGIVDEVIVLD----KFKDI 73 (366)
T ss_pred cccEEEEEe----------cchHHHHhccHHhcCCcEEEEE--cCCCcc------hhhhhccccceEEEec----chhhh
Confidence 457999997 2479999999999999987653 333210 11000 001000011 01100
Q ss_pred --hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHH-HHhccHHHHHHHHHHCCCCCCCeEEecCCc
Q 002207 154 --SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC-RQAFDKYDASLEMSKQGFITVPSFLLQGSE 230 (953)
Q Consensus 154 --~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~-~i~~DK~~~k~~l~~~Giptp~~~~~~~~~ 230 (953)
.+..+.+... + ++.+-||.+-+--.+..+...+.+|+.|+...-- .--.||..+.++|+++||++|+.+.- .
T Consensus 74 ~~~~~~~~l~~~-n-~i~iPh~sf~~y~g~~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~~--p- 148 (366)
T PRK13277 74 LSEKVQDELREE-N-AIFVPNRSFAVYVGYDAIENEFKVPIFGNRYLLRWEERTGEKNYYWLLEKAGIPYPKLFKD--P- 148 (366)
T ss_pred hhHHHHHHHHHC-C-eEEecCCCeEEEecHHHHhhcCCCCcccCHHHhhhhhccCHHHHHHHHHHcCCCCceeecC--c-
Confidence 1222223222 2 3445578888777777776689999999864432 22368888877999999999987751 1
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCC--ceeEEEeCCHHHHHHHHHHhHhc-----CCCCcEEEeccCCCCeEEE
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGS--SIGVTVAYGVIDSLKKAKGIILE-----GIDDRVVVELFLEGGSEFT 303 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gs--S~GV~~v~~~~el~~~a~~~~~~-----~~~~~vlVEefI~Gg~E~t 303 (953)
+++.+||||||..+.+ |+|+++|+|.+|+..++.+.... ....+++|||||.| .||+
T Consensus 149 ---------------~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~ 212 (366)
T PRK13277 149 ---------------EEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFN 212 (366)
T ss_pred ---------------cccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEE
Confidence 1267899999999999 99999999999988777654321 11245679999998 9999
Q ss_pred EEEEEeCCCCccccEEecce-EEEEeccCccccccCCcccccccCcc------CCCceEEEcCCCCCHHHHHHHHHHHHH
Q 002207 304 AIVLDVGSGFDCHPVVLLPT-EVELQFQGSVDVREKDAIFNYRRKYL------PTQQVAYHTPPRFPIVVINSIREGASL 376 (953)
Q Consensus 304 v~Vl~~~~g~~~~~v~l~~~-ei~~~~~~~~~~~~~~~~~dy~~Ky~------~~~~~~~~~Pa~l~~~~~~~i~~~a~~ 376 (953)
+.++-+.- ++....+.+- +++.. -+++...-++-. +.....-+.|..+.+...+.+.+++.+
T Consensus 213 ~d~F~s~l--~g~ve~l~id~R~esn---------~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t~rEslle~v~e~ger 281 (366)
T PRK13277 213 FNYFYSPI--RDRLELLGIDRRIQSN---------LDGFVRLPAPQQLKLNEEPRYIEVGHEPATIRESLLEKVFEIGEK 281 (366)
T ss_pred EEEEEecc--CCcEEEEEEeeccccc---------cccccccChhhhhhcccCCceEEEcCccccchHHHHHHHHHHHHH
Confidence 99995311 1112221111 11100 122222211110 000011137888888899999999999
Q ss_pred HHHHhC------CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCC-CCcchHHHHHHHhCCCHHHHH
Q 002207 377 LFQRLG------LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM-EQTSFLFQQASKVGFSHSNIL 448 (953)
Q Consensus 377 ~~~aLg------~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~-t~~S~~p~~a~~~G~s~~~ll 448 (953)
+.++++ +.|...+|+++ ++|+++|++|||++-|- |+.+ ..+|-+|+.++
T Consensus 282 ~v~a~~~~~~pg~iGpf~lQ~iv-----------------~~d~~~~V~EInpR~gGGtnl~------~~aGs~y~~l~ 337 (366)
T PRK13277 282 FVEATKELYPPGIIGPFTLQTIV-----------------TPDLDFVVYDVAPRIGGGTNVY------MGVGSPYSKLY 337 (366)
T ss_pred HHHHhhhhcCcccccceEEEEEE-----------------cCCCcEEEEEEcCCcCCCccce------eecCCCcHHHH
Confidence 999976 68999999886 67899999999997653 3332 24566666554
No 133
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.65 E-value=2.7e-15 Score=178.88 Aligned_cols=194 Identities=20% Similarity=0.206 Sum_probs=131.0
Q ss_pred CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEE-eCCHHH
Q 002207 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV-AYGVID 273 (953)
Q Consensus 195 s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~-v~~~~e 273 (953)
+++.+..+|.||..+|++|+++|||+|++..+.+.+ ++.+++++ .+ |+||||..|++|.||++ +++.++
T Consensus 287 ~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~~----~~~~~~~~-----~G-~vVVKP~~G~~G~Gv~v~v~~~~e 356 (547)
T TIGR03103 287 TSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNGE----AVEAFLAE-----HG-AVVVKPVRGEQGKGISVDVRTPDD 356 (547)
T ss_pred CCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCHH----HHHHHHHH-----hC-CEEEEECCCCCCcCeEEecCCHHH
Confidence 478899999999999999999999999999876533 23333322 33 79999999999999997 899998
Q ss_pred HHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEec---ceEEEEeccCccccc--------------
Q 002207 274 SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL---PTEVELQFQGSVDVR-------------- 336 (953)
Q Consensus 274 l~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~---~~ei~~~~~~~~~~~-------------- 336 (953)
+.+...... .++..+|||+||+| +|+++.|++ + ++++.. +..| ..++...+.
T Consensus 357 L~~a~~~a~--~~~~~vlvEe~i~G-~d~Rv~Vig----g--~vvaa~~R~~~~V--~GDG~~ti~~Lie~~n~~~~~~~ 425 (547)
T TIGR03103 357 LEAAIAKAR--QFCDRVLLERYVPG-EDLRLVVID----F--EVVAAAVRRPPEV--IGDGRSSIRDLIEKQSRRRAAAT 425 (547)
T ss_pred HHHHHHHHH--hcCCcEEEEEeccC-CeEEEEEEC----C--EEEEEEEecCcEE--EeCCccCHHHHHHHHhcCccCCC
Confidence 776655443 25678999999998 999999994 2 233211 1111 111110000
Q ss_pred ---------------------------cCCc--ccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 337 ---------------------------EKDA--IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 337 ---------------------------~~~~--~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+.++ +..+.+....|+ +. .++++++...++++|.++++++|+. ++
T Consensus 426 ~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg-~~----~dvtd~~~~~~~~~A~~aa~~~gl~-~~ 499 (547)
T TIGR03103 426 GGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGG-TI----HDVTEQLHPDLREAAERAARALDIP-VV 499 (547)
T ss_pred CCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCC-ee----EecccccCHHHHHHHHHHHHHhCCC-eE
Confidence 0000 001122222232 11 1345566677799999999999997 99
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCc
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 430 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~ 430 (953)
.||+++.+ .......|||+|.+|||..+
T Consensus 500 GvD~i~~~---------------~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 500 GIDFLVPD---------------VTGPDYVIIEANERPGLANH 527 (547)
T ss_pred EEEEEecc---------------CCCCCeEEEEecCCcccccc
Confidence 99987621 01234799999999999876
No 134
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.63 E-value=4.7e-15 Score=172.87 Aligned_cols=303 Identities=15% Similarity=0.130 Sum_probs=222.6
Q ss_pred eEEEEe-c----CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 79 RVGLIC-G----GPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 79 kV~vl~-G----G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
-+.||. | |.|.|+|.. |-+.++.||+.|+..+.+..+++- ..++....-.+|.+.+. +.+.
T Consensus 920 g~mVlGsGvYrIGSSVEFDwc---aV~~~rtLr~~g~kTimvNyNPET---------VSTDyDecdrLYFeeis--~E~v 985 (1435)
T KOG0370|consen 920 GVMVLGSGVYRIGSSVEFDWC---AVGCARTLRKLGKKTIMVNYNPET---------VSTDYDECDRLYFEEIS--YERV 985 (1435)
T ss_pred ceEEEcccceecccceeechh---hhhHHHHHHHcCCceEEEecCccc---------ccCchHHHhhHhHhhhh--hhhh
Confidence 366663 4 889999986 788899999999999877655541 11111000011111110 1011
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
-++.+ .++..-++..++|+...| |+--|...|+...|+++..+-.|.|++.+.++|.+.||..|+|..+.+-++
T Consensus 986 mDiYe--~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~e-- 1059 (1435)
T KOG0370|consen 986 MDIYE--LENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEE-- 1059 (1435)
T ss_pred hhhhh--hccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhhhccHHH--
Confidence 11111 246888999999998876 455678889999999999999999999999999999999999988776543
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
..++.+ .++|||+|+|..--|+-.+.++++.+|+......+..-+.+..|++-+||+|++|+.+..+. .
T Consensus 1060 --A~~F~~-----~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie~AkEidvDAVa----~ 1128 (1435)
T KOG0370|consen 1060 --AKKFAE-----KVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSPDHPVVISKFIEGAKEIDVDAVA----S 1128 (1435)
T ss_pred --HHHHHH-----hcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhcccceechhhhc----c
Confidence 334443 48899999999999999999999999877665554433567899999999999999999984 4
Q ss_pred ccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeee
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGW 392 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~ 392 (953)
++..++....|.+ -.+..++|+ .....|++ ++++..++|++++.++.++|.+.|..+++|+
T Consensus 1129 ~G~~~~haiSEHv-----------------EnAGVHSGD-Atlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i 1190 (1435)
T KOG0370|consen 1129 DGKVLVHAISEHV-----------------ENAGVHSGD-ATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQII 1190 (1435)
T ss_pred CCeEEEEehhhhh-----------------hcccccCCc-eeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEE
Confidence 4555543333321 113344455 44556654 9999999999999999999999999999997
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
. +++++.+||.|.+-. -.||...+-.|.+|-++..+.|
T Consensus 1191 ~------------------k~n~lkVIECN~RaS----RSFPFvSKtlgvdfi~~At~~i 1228 (1435)
T KOG0370|consen 1191 A------------------KDNELKVIECNVRAS----RSFPFVSKTLGVDFIALATRAI 1228 (1435)
T ss_pred e------------------cCCeEEEEEeeeeee----ccccceehhcCchHHHHHHHHH
Confidence 4 677899999998654 4468787888999887776655
No 135
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.63 E-value=8.3e-16 Score=155.18 Aligned_cols=157 Identities=22% Similarity=0.347 Sum_probs=85.6
Q ss_pred hcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHH
Q 002207 674 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 753 (953)
Q Consensus 674 ~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~ 753 (953)
|.||..|.+. |+++|||+|......... .. .+|+|+||.++.||.||.++++.+++...
T Consensus 1 ~~dK~~~~~~---L~~~gi~~P~~~~~~~~~---------------~~-~~~~viKp~~G~Gg~~i~~~~~~~~~~~~-- 59 (161)
T PF02655_consen 1 CSDKLKTYKF---LKELGIPVPTTLRDSEPE---------------PI-DGPWVIKPRDGAGGEGIRIVDSEDELEEF-- 59 (161)
T ss_dssp -TSHHHHHHH---HTTT-S--------EESS------------------SSSEEEEESS-------B--SS--TTE----
T ss_pred CCCHHHHHHH---HHccCCCCCCcccccccc---------------cc-CCcEEEEeCCCCCCCCeEEECCchhhccc--
Confidence 7899999998 999999999333222111 12 58999999999999999999998887631
Q ss_pred HHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCcee
Q 002207 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 833 (953)
Q Consensus 754 al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~ 833 (953)
+ ....++||||+|. ++++.++.+.+....
T Consensus 60 -~-------------------------~~~~i~Qe~i~G~-------------------------~~Sv~~l~~~~~~~~ 88 (161)
T PF02655_consen 60 -L-------------------------NKLRIVQEFIEGE-------------------------PYSVSFLASGGGARL 88 (161)
T ss_dssp -------------------------------EEEE---SE-------------------------EEEEEEEE-SSSEEE
T ss_pred -c-------------------------ccceEEeeeeCCE-------------------------EeEEEEEEeCCceEE
Confidence 1 1223999999997 999999998766543
Q ss_pred eCceEEEecC-CccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEEcCCCcEEEEe
Q 002207 834 LMPSVTVKES-GDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL-QLEGFSRIDAFVNVDNGEVLIIE 911 (953)
Q Consensus 834 ~~p~~~i~~~-~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL-g~~G~ariDf~v~~~~g~~~viE 911 (953)
+......... ..- -.|.++ ..|.. ....+++.+++++++++| |+.|+..|||+++ ++++|++|
T Consensus 89 l~~~rq~i~~~~~~----~~~~G~----~~~~~-----~~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~--~~~~~viE 153 (161)
T PF02655_consen 89 LGVNRQLIGNDDGR----FRYCGG----IVPAD-----TPLKEEIIELARRIAEALPGLRGYVGIDFILD--DGGPYVIE 153 (161)
T ss_dssp EEEEEEEEET--------TEEEEE----EES---------HHHHHHHHHHHHHTTSTT--EEEEEEEEES--S-SEEEEE
T ss_pred EEechHhhccccce----eeeccc----ccccC-----CchHHHHHHHHHHHHHHcCCCeeeEeEEEEEe--CCcEEEEE
Confidence 3222222211 111 123322 34553 234789999999999999 9999999999997 47899999
Q ss_pred eCCCCC
Q 002207 912 VNTVPG 917 (953)
Q Consensus 912 INt~PG 917 (953)
|||+++
T Consensus 154 INPR~t 159 (161)
T PF02655_consen 154 INPRFT 159 (161)
T ss_dssp EESS--
T ss_pred EcCCCC
Confidence 998875
No 136
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.63 E-value=2.7e-14 Score=157.12 Aligned_cols=217 Identities=16% Similarity=0.190 Sum_probs=136.1
Q ss_pred CCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCC-c
Q 002207 173 GRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-K 251 (953)
Q Consensus 173 G~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-P 251 (953)
|-.|.|...-.+...+ ++....-++.||..|..+|+++|||||+++.+.+.+.....+.+++ ..+ |
T Consensus 11 ~~~~~~~~~~~~~~~~------N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~-------~~~~~ 77 (317)
T TIGR02291 11 GIMGMNKRNADYILRY------NKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIV-------KDHPD 77 (317)
T ss_pred CccccCcchHHHHHhc------CCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHH-------ccCCC
Confidence 4445554444444443 4456678899999999999999999999888876654444444433 123 7
Q ss_pred EEEeeCCCCCceeEEEeCCHHH---------------HHHHHH----HhHhc-CCCCcEEEeccCCCC-----------e
Q 002207 252 VVVKPTRAGSSIGVTVAYGVID---------------SLKKAK----GIILE-GIDDRVVVELFLEGG-----------S 300 (953)
Q Consensus 252 vvVKP~~~gsS~GV~~v~~~~e---------------l~~~a~----~~~~~-~~~~~vlVEefI~Gg-----------~ 300 (953)
+||||..|+.|.||.++.+.++ +...+. .++.. ...+.+++|+++... +
T Consensus 78 VVVKPl~Gs~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~ 157 (317)
T TIGR02291 78 FVIKPAQGSGGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVP 157 (317)
T ss_pred EEEEECCCCCccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCC
Confidence 9999999999999999965432 222111 12111 112357777665432 5
Q ss_pred EEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceE-------------------EEcC--
Q 002207 301 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVA-------------------YHTP-- 359 (953)
Q Consensus 301 E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~-------------------~~~P-- 359 (953)
.+.|.++++ .+++ -+.-... .--+++.++..|+... ...|
T Consensus 158 diRV~vv~~------~~va----a~~R~~~---------~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t 218 (317)
T TIGR02291 158 DIRIIVFKG------YPVM----AMMRLPT---------RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDT 218 (317)
T ss_pred CEEEEEECC------EEEE----EEEEccC---------ccCCcccccccCCceeeeecCCCccccccccCCccccCCCc
Confidence 778888741 1221 0111000 0001122222221100 0011
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHH
Q 002207 360 ----PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ 435 (953)
Q Consensus 360 ----a~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~ 435 (953)
..+..+..+++.++|.++++++|| |++++|+++ +.+|.++|+|||+.|||| |+
T Consensus 219 ~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~-----------------~~~~g~~VlEVN~~Pg~t-----~~ 275 (317)
T TIGR02291 219 GKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVL-----------------DKEEGPLVLELNARPGLA-----IQ 275 (317)
T ss_pred ccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEE-----------------eCCCCEEEEEeCCCCCCC-----HH
Confidence 123445678899999999999999 899999976 456679999999999998 78
Q ss_pred HHHHhCCCH
Q 002207 436 QASKVGFSH 444 (953)
Q Consensus 436 ~a~~~G~s~ 444 (953)
.+.++|++.
T Consensus 276 ~a~~~Gl~~ 284 (317)
T TIGR02291 276 IANGAGLLP 284 (317)
T ss_pred HHHHCCCcH
Confidence 889999974
No 137
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.62 E-value=7.1e-15 Score=148.91 Aligned_cols=163 Identities=20% Similarity=0.148 Sum_probs=117.7
Q ss_pred HHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCC-CCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEE
Q 002207 213 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR-AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 291 (953)
Q Consensus 213 l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~-~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vl 291 (953)
|+++|||||||..+.+.++ +..... .++||+|+|++. |..+.|..++++.+|+......+ ....+|
T Consensus 1 l~~~gip~~~~~~i~~~~~----l~~a~~-----~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~----~~~~~i 67 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLED----LEEAAE-----SIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL----GGGPCI 67 (172)
T ss_dssp HHHTT--B-EEEEESSHHH----HHHHHH-----HHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT----TTSCEE
T ss_pred CcccCCCCCCeEEECCHHH----HHHHHH-----HcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc----CCCcEE
Confidence 6889999999999987653 333332 267899999655 55589999999999977555443 357899
Q ss_pred EeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHH
Q 002207 292 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 371 (953)
Q Consensus 292 VEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~ 371 (953)
+|+||+-.+|+++.+.++.+| +....++.|-.. .++++ .....|+++++++.++++
T Consensus 68 lE~~v~f~~EiSvivaR~~~G---~~~~yp~~en~~----------~~~il-----------~~s~~Pa~i~~~~~~~a~ 123 (172)
T PF02222_consen 68 LEEFVPFDREISVIVARDQDG---EIRFYPPVENVH----------RDGIL-----------HESIAPARISDEVEEEAK 123 (172)
T ss_dssp EEE---ESEEEEEEEEEETTS---EEEEEEEEEEEE----------ETTEE-----------EEEEESCSS-HHHHHHHH
T ss_pred EEeccCCcEEEEEEEEEcCCC---CEEEEcCceEEE----------ECCEE-----------EEEECCCCCCHHHHHHHH
Confidence 999998779999999986543 345555554321 11111 234589999999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCc-EEEEeecCCCCCCC
Q 002207 372 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGT-ILFTDINLISGMEQ 429 (953)
Q Consensus 372 ~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~-~~~lEIN~~PG~t~ 429 (953)
++|.++.++|++.|...|+||+ +++|+ +||+||.|+|.-+.
T Consensus 124 ~ia~~i~~~l~~vGv~~VE~Fv-----------------~~~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 124 EIARKIAEALDYVGVLAVEFFV-----------------TKDGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp HHHHHHHHHHTSSEEEEEEEEE-----------------ETTSTEEEEEEEESS--GGG
T ss_pred HHHHHHHHHcCcEEEEEEEEEE-----------------ecCCCEEEEEeccCCccCcc
Confidence 9999999999999999999987 67887 99999999997443
No 138
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.62 E-value=1.4e-14 Score=172.82 Aligned_cols=201 Identities=19% Similarity=0.244 Sum_probs=126.7
Q ss_pred ChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEE-eCCc
Q 002207 667 GVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR-LCCA 745 (953)
Q Consensus 667 ~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~-v~~~ 745 (953)
++.+..+|.||..||++ |+++|||||++..+.+.+ .+.++.+++ + |+||||+.+++|.||++ +.+.
T Consensus 288 s~~ai~~~~DK~~tk~l---L~~aGIpVP~~~~~~~~~--------~~~~~~~~~-G-~vVVKP~~G~~G~Gv~v~v~~~ 354 (547)
T TIGR03103 288 SAVAMSLCDDKRLTRRL---VSEAGLQVPEQQLAGNGE--------AVEAFLAEH-G-AVVVKPVRGEQGKGISVDVRTP 354 (547)
T ss_pred CHHHHHHhcCHHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHh-C-CEEEEECCCCCCcCeEEecCCH
Confidence 67889999999999999 999999999998876432 234455677 4 69999999999999997 8888
Q ss_pred ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCce--eEEEEE
Q 002207 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW--VEITVG 823 (953)
Q Consensus 746 ~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~--~Eitv~ 823 (953)
++|.. +++.+..+ ...+|||+||+|.++++ ++++|..-. .-....
T Consensus 355 ~eL~~---a~~~a~~~-------------------~~~vlvEe~i~G~d~Rv-----------~Vigg~vvaa~~R~~~~ 401 (547)
T TIGR03103 355 DDLEA---AIAKARQF-------------------CDRVLLERYVPGEDLRL-----------VVIDFEVVAAAVRRPPE 401 (547)
T ss_pred HHHHH---HHHHHHhc-------------------CCcEEEEEeccCCeEEE-----------EEECCEEEEEEEecCcE
Confidence 88875 66666544 46899999999984333 112220000 000111
Q ss_pred EEcCCCCce-eeC------------ceEEEecC--------Cccccc--------------cccccCCCceeEcCCCCCC
Q 002207 824 VIGKCGSMH-SLM------------PSVTVKES--------GDILSL--------------EEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 824 vl~~~~~~~-~~~------------p~~~i~~~--------~~~~d~--------------~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|++...+ .+. ....+.-. ..-|++ .+..+.|.+ ..+
T Consensus 402 V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~-------~~d 474 (547)
T TIGR03103 402 VIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGT-------IHD 474 (547)
T ss_pred EEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCe-------eEe
Confidence 222211000 000 00000000 000111 111111111 112
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcC-CCcEEEEeeCCCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD-NGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~-~g~~~viEINt~PGlt~~ 921 (953)
+++++...++++|.++++++|+. ++.||+++... .....|||+|..|||..+
T Consensus 475 vtd~~~~~~~~~A~~aa~~~gl~-~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 475 VTEQLHPDLREAAERAARALDIP-VVGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred cccccCHHHHHHHHHHHHHhCCC-eEEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 45677889999999999999997 89999998632 234689999999999876
No 139
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.62 E-value=9.2e-14 Score=154.04 Aligned_cols=251 Identities=15% Similarity=0.101 Sum_probs=159.6
Q ss_pred HHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHHhhccCcCEEEEcCCCCCCCch
Q 002207 100 SVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDG 179 (953)
Q Consensus 100 ~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg 179 (953)
.+++++++.|++++.|+.+... . . ...+|+|+--+.+......
T Consensus 40 ~l~~~~~~~Gi~~v~Id~~~pl----------------------~--~-------------qgpfDvilhK~~~~~~~~~ 82 (328)
T PLN02941 40 SLEALARSKGIDLVAIDPSRPL----------------------S--E-------------QGPFDVILHKLYGKEWRQQ 82 (328)
T ss_pred HHHHHHHHCCCeEEEecCCCCc----------------------c--c-------------cCCcCEEEEecCCHHHHHH
Confidence 4888999999999987654310 0 0 1146888877765332222
Q ss_pred HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCC-------CCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcE
Q 002207 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQG-------FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV 252 (953)
Q Consensus 180 ~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~G-------iptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pv 252 (953)
...-.+|..|++.+ .++.+...|.||..|.+.|+++| ||+|+++++.+.+.+...... ...++||+
T Consensus 83 ~~~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~------~~~l~~P~ 155 (328)
T PLN02941 83 LEEYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVA------LAGLKFPL 155 (328)
T ss_pred HHHHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHH------HhcCCCCE
Confidence 23456778899987 67899999999999999999999 999999999875432211111 13478999
Q ss_pred EEeeCCC---CCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccC-CCCeEEEEEEEEeCCCCccccEEecceEEEEe
Q 002207 253 VVKPTRA---GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFL-EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQ 328 (953)
Q Consensus 253 vVKP~~~---gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI-~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~ 328 (953)
|+||..+ ..|.++.++++.+.+.. ....+++|||| .||+.|.|-|+| +. ..+ +...
T Consensus 156 V~KPl~g~Gss~gh~m~lv~~~~~L~~---------l~~p~~lQEfVnh~g~d~RVfVvG----d~--v~~-----~~R~ 215 (328)
T PLN02941 156 VAKPLVADGSAKSHKMSLAYDQEGLSK---------LEPPLVLQEFVNHGGVLFKVYVVG----DY--VKC-----VRRF 215 (328)
T ss_pred EEeecccCCCccccceEEecCHHHHHh---------cCCcEEEEEecCCCCEEEEEEEEC----CE--EEE-----EEec
Confidence 9999999 77899999999987553 23469999999 456999999995 22 111 1100
Q ss_pred cc-Ccc--ccccCCccc--ccccCccCCCceEE---EcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcc
Q 002207 329 FQ-GSV--DVREKDAIF--NYRRKYLPTQQVAY---HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHV 400 (953)
Q Consensus 329 ~~-~~~--~~~~~~~~~--dy~~Ky~~~~~~~~---~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~ 400 (953)
+. +.. +.+...+.+ +...+...+..-.. .-|...+......+.++|.++.++||+. +++||++...
T Consensus 216 S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~-l~GvDvI~~~----- 289 (328)
T PLN02941 216 SLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLR-LFNFDMIREH----- 289 (328)
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCc-eEEEEEEeec-----
Confidence 00 000 000011122 22222221110000 0011111122345799999999999986 9999987521
Q ss_pred ccccccccCcccCCcEEEEeecCCCCCCCc
Q 002207 401 FSSSETKYGSTEWGTILFTDINLISGMEQT 430 (953)
Q Consensus 401 ~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~ 430 (953)
+.+++++|+|||-.||+..-
T Consensus 290 ----------~~~~~~~VidVN~fP~~k~~ 309 (328)
T PLN02941 290 ----------GTGDRYYVIDINYFPGYAKM 309 (328)
T ss_pred ----------CCCCceEEEEecCCCccccC
Confidence 11246999999999997653
No 140
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.61 E-value=7.5e-15 Score=150.16 Aligned_cols=177 Identities=20% Similarity=0.199 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcE-EEeeCCCCCceeEEEeCCHHHHHHHHHHhHh
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV-VVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 283 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pv-vVKP~~~gsS~GV~~v~~~~el~~~a~~~~~ 283 (953)
+|..+|++|+++||||+++..+.+.+.. .+++++ ..+|+ ||||....+++||.++.+.+|+.+.+.+++.
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A----~~~l~~-----~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEA----LEYLEE-----QGYPYVVIKADGLAAGKGVVIADDREEALEALREIFV 72 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHH----HHHHHH-----HSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHH----HHHHHh-----cCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhcc
Confidence 7999999999999999999999875433 333332 45577 9999999999999999999999999988875
Q ss_pred c-C---CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcC
Q 002207 284 E-G---IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 359 (953)
Q Consensus 284 ~-~---~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~P 359 (953)
. . ....++||||+.| .|+++.++-++. ..+.+++.. +....|+-+.--..++ +...+|
T Consensus 73 ~~~fg~~~~~vvIEE~l~G-~E~S~~a~~dG~----~~~~lp~aq------------D~Kr~~dgd~GpnTGG-MGa~sp 134 (194)
T PF01071_consen 73 DRKFGDAGSKVVIEEFLEG-EEVSLFALTDGK----NFVPLPPAQ------------DHKRLFDGDTGPNTGG-MGAYSP 134 (194)
T ss_dssp SSTTCCCGSSEEEEE---S-EEEEEEEEEESS----EEEEEEEBE------------EEEEEETTTEEEEESE-SEEEES
T ss_pred ccccCCCCCcEEEEeccCC-eEEEEEEEEcCC----eEEECcchh------------ccccccCCCCCCCCCC-ccceee
Confidence 2 2 2468999999998 999999997542 223333321 1233444443333333 455567
Q ss_pred CC-CCHHHHHHHHH-HHHHHHHHh-----CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 360 PR-FPIVVINSIRE-GASLLFQRL-----GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 360 a~-l~~~~~~~i~~-~a~~~~~aL-----g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
.+ ++++..+++++ +...+.++| .++|+--+.+++ +++| |++||.|.+.|
T Consensus 135 ~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMl-----------------t~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 135 VPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLML-----------------TEDG-PKVLEFNVRFG 190 (194)
T ss_dssp TTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEE-----------------ETTE-EEEEEEESSGS
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEE-----------------eCCC-cEEEEEeCCCC
Confidence 66 68887777765 666666666 567888888775 6677 99999999988
No 141
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.61 E-value=2.5e-14 Score=175.94 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=87.4
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
..|..++..+.. +.+..++.+|+||..+|++ |+++|||||++..+.+.+ .+.++.+++ +||+||||
T Consensus 191 ~~~~~i~~~~~~--~~s~~a~~i~~DK~~tk~l---L~~~GIPvP~~~~v~s~~--------~a~~~a~~i-G~PvVVKP 256 (727)
T PRK14016 191 KYQRRIQAAETD--QTSAIAVDIACDKELTKRL---LAAAGVPVPEGRVVTSAE--------DAWEAAEEI-GYPVVVKP 256 (727)
T ss_pred HHHHHHHHhcCC--CCcHHHHHHhCCHHHHHHH---HHHCCcCCCCeeEeCCHH--------HHHHHHHHc-CCCEEEEE
Confidence 456666766665 7788999999999999999 999999999998776532 233455778 69999999
Q ss_pred CCCCCCcceEE-eCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccc
Q 002207 731 ARDGCSTGVAR-LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795 (953)
Q Consensus 731 ~~~gsS~GV~~-v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~ 795 (953)
..+++|.||++ +++.+++.+ +++.+... ...+|||+||+|+++
T Consensus 257 ~~G~~G~GV~~~v~~~~el~~---a~~~a~~~-------------------~~~viVEe~I~G~d~ 300 (727)
T PRK14016 257 LDGNHGRGVTVNITTREEIEA---AYAVASKE-------------------SSDVIVERYIPGKDH 300 (727)
T ss_pred CCCCCCCceEEecCCHHHHHH---HHHHHHHh-------------------CCeEEEEEecCCceE
Confidence 99999999997 899888875 45555433 468999999999833
No 142
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.61 E-value=5e-14 Score=159.39 Aligned_cols=250 Identities=21% Similarity=0.274 Sum_probs=181.5
Q ss_pred cChHHHHHHhhc-CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEE
Q 002207 622 HSINEWIKLAKE-NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR 700 (953)
Q Consensus 622 ~~~~~~~~~~~~-~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v 700 (953)
+...+.++.+++ .+|.|-|.. |...|.......+...||.|+||++....-.-||...+.+ .-++|+|+.|..
T Consensus 93 L~ideii~iak~~~vdavHPGY-GFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~---Ai~agVpvVPGT-- 166 (1176)
T KOG0369|consen 93 LAIDEIISIAKKHNVDAVHPGY-GFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAI---AIEAGVPVVPGT-- 166 (1176)
T ss_pred hhHHHHHHHHHHcCCCeecCCc-cccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHH---HHHcCCCccCCC--
Confidence 344566766554 567766554 5666888888889999999999999999999999999998 889999987753
Q ss_pred eCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHH-HHHHHHHHHhhCCCCCcccccccccCCCC
Q 002207 701 RKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV-YVKALEECLLRIPPNSFSRAHGMIEMPNP 779 (953)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~-~~~al~~a~~~~~~~~~~~~~~~~~~p~~ 779 (953)
+.... . .+...++.++. ++|+|+|.+.+|+++|+.+|++.+++++ |.+|-.++...+ |
T Consensus 167 -pgPit--t-~~EA~eF~k~y-G~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaF---------G------- 225 (1176)
T KOG0369|consen 167 -PGPIT--T-VEEALEFVKEY-GLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAF---------G------- 225 (1176)
T ss_pred -CCCcc--c-HHHHHHHHHhc-CCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhc---------C-------
Confidence 11111 1 23345667788 6999999999999999999999999886 333433443321 1
Q ss_pred CCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccC--CC
Q 002207 780 PPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG--GT 857 (953)
Q Consensus 780 ~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~--g~ 857 (953)
+..+.||+||+-. +.++|.+++++...+.- . |.-+...+. ..
T Consensus 226 -nG~~FvEkF~ekP------------------------rHIEvQllgD~~GNvvH-----L------yERDCSvQRRHQK 269 (1176)
T KOG0369|consen 226 -NGTLFVEKFLEKP------------------------RHIEVQLLGDKHGNVVH-----L------YERDCSVQRRHQK 269 (1176)
T ss_pred -CceeeHHhhhcCc------------------------ceeEEEEecccCCCEEE-----E------eecccchhhhhcc
Confidence 6789999999976 59999999987433211 1 111111111 12
Q ss_pred ceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCC--------CCCCCchHHHHHH
Q 002207 858 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP--------GMTPSTVLIHQAL 929 (953)
Q Consensus 858 ~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~P--------Glt~~S~l~~~a~ 929 (953)
...+.|++ .+++++.++|..-|.++++..|.+....++|.+|. .|+.||||||++- -+|...+.-.|..
T Consensus 270 VVEiAPA~--~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~-~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~ 346 (1176)
T KOG0369|consen 270 VVEIAPAK--TLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQ-KGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIH 346 (1176)
T ss_pred eeEecccc--cCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEcc-CCCEEEEEecCceeeeeeeeeeeccchhhhhhhh
Confidence 34566766 48999999999999999999999999999999995 7999999999743 3344444555555
Q ss_pred hcCCCCCH
Q 002207 930 SEQPPMYP 937 (953)
Q Consensus 930 ~~~~~~yp 937 (953)
.++|...|
T Consensus 347 vAeG~tLp 354 (1176)
T KOG0369|consen 347 VAEGASLP 354 (1176)
T ss_pred hhcCCCcc
Confidence 55555554
No 143
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.61 E-value=2.9e-14 Score=175.39 Aligned_cols=131 Identities=18% Similarity=0.119 Sum_probs=100.5
Q ss_pred ccCcCEEEEc----CCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhh
Q 002207 161 AANVDIVFPT----IHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESEL 236 (953)
Q Consensus 161 ~~~~D~vf~~----lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~ 236 (953)
...+++.... +|-++| ..|..++..+.. +++..++.+|.||..+|++|+++|||+|++..+.+.+. +
T Consensus 171 ~~gi~~~~l~~~~~v~lgyG---~~~~~i~~~~~~--~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~----a 241 (727)
T PRK14016 171 ARGIPYIRLGDGSLVQLGYG---KYQRRIQAAETD--QTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAED----A 241 (727)
T ss_pred HcCCCEEEeCCCCeEecCCc---HHHHHHHHhcCC--CCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHHH----H
Confidence 4567776633 233333 455666666655 77889999999999999999999999999998765432 2
Q ss_pred hhhhhhcCCCCCCCcEEEeeCCCCCceeEEE-eCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 237 SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV-AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 237 ~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~-v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.++.+ .++||+||||..+++|.||++ +++.+|+.+....+.. .+..+|||+||+| +|+++.|++
T Consensus 242 ~~~a~-----~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~--~~~~viVEe~I~G-~d~Rv~Vvg 306 (727)
T PRK14016 242 WEAAE-----EIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASK--ESSDVIVERYIPG-KDHRLLVVG 306 (727)
T ss_pred HHHHH-----HcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHH--hCCeEEEEEecCC-ceEEEEEEC
Confidence 23322 378999999999999999997 9999997766654432 4578999999997 999999984
No 144
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.8e-14 Score=156.01 Aligned_cols=214 Identities=17% Similarity=0.248 Sum_probs=144.7
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
..|++|+-.-...----.+-..+|..|++.+ .++.+...|.||.++-++ |..+|||+|++.++.+.+ +.
T Consensus 78 ~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~---l~~~~ipvP~T~i~~~~~-------~~ 146 (318)
T COG0189 78 ELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQL---LAKAGIPVPPTLITRDPD-------EA 146 (318)
T ss_pred cCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHH---HHhcCCCCCCEEEEcCHH-------HH
Confidence 4688887763322221134568899999987 567899999999999998 999999999999887642 22
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcc-cHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAE-DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~-eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
...+.+.+ +||+|+||.+|.+|.||.++.+.+ ++..+ ++..... ....+|+|+||+-
T Consensus 147 ~~~~~~~~-g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~---~e~~~~~------------------~~~~~ivQeyi~~ 204 (318)
T COG0189 147 AEFVAEHL-GFPVVLKPLDGSGGRGVFLVEDADPELLSL---LETLTQE------------------GRKLIIVQEYIPK 204 (318)
T ss_pred HHHHHHhc-CCCEEEeeCCCCCccceEEecCCChhHHHH---HHHHhcc------------------ccceEehhhhcCc
Confidence 34455667 699999999999999999999999 76653 3333221 1246999999985
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEE-EecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVT-VKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~-i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
.. ++...-+++++ ...+.. .+. +..++ +|...+..|.... |.+ ++
T Consensus 205 ~~-----------------------~~~rrivv~~~-~~~~~y-~~~R~~~~~---~~R~N~a~Gg~~e--~~~---l~- 250 (318)
T COG0189 205 AK-----------------------RDDRRVLVGGG-EVVAIY-ALARIPASG---DFRSNLARGGRAE--PCE---LT- 250 (318)
T ss_pred cc-----------------------CCcEEEEEeCC-EEeEEe-eeccccCCC---Cceeecccccccc--ccC---CC-
Confidence 40 13334444432 111110 222 22233 3444555454332 222 23
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++++|.+++++||+. ++.||++.+ ++..||+|||..|+.-.
T Consensus 251 ---~e~~elA~kaa~~lGl~-~~GVDiie~--~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 251 ---EEEEELAVKAAPALGLG-LVGVDIIED--KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred ---HHHHHHHHHHHHHhCCe-EEEEEEEec--CCCcEEEEEeCCCcccc
Confidence 47789999999999874 899999987 45699999999886554
No 145
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.60 E-value=2.4e-14 Score=179.33 Aligned_cols=102 Identities=22% Similarity=0.169 Sum_probs=84.5
Q ss_pred CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEE-eCCHHH
Q 002207 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV-AYGVID 273 (953)
Q Consensus 195 s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~-v~~~~e 273 (953)
++..++.+|+||..+|++|+++|||+|++..+.+.+. +.++++ .++||+||||..+++|.||++ +++.++
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~e----a~~~~~-----~ig~PvVVKP~~g~~G~GV~l~v~s~~e 273 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAED----AWEAAQ-----DLGYPVVIKPYDGNHGRGVTINILTRDE 273 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHHH----HHHHHH-----HcCCCEEEEECCCCCccCEEEEeCCHHH
Confidence 5688999999999999999999999999988865432 233332 367899999999999999998 999999
Q ss_pred HHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 274 SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 274 l~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
+.++...+.. .+..+|||+||+| +||++.|++
T Consensus 274 l~~a~~~a~~--~~~~vlVEefI~G-~e~rvlVv~ 305 (864)
T TIGR02068 274 IESAYEAAVE--ESSGVIVERFITG-RDHRLLVVG 305 (864)
T ss_pred HHHHHHHHHh--hCCcEEEEEeccC-CEEEEEEEC
Confidence 8766655432 4578999999998 999999984
No 146
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.59 E-value=1.6e-13 Score=150.18 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=148.3
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
.+..+.....+ -+++.+.++..||...|++ |+++|||||+|..+.+.+ .+..+...+ ++|.|+|-
T Consensus 77 aL~~l~~~~~v---~p~~~~l~~~qdR~~eK~~---l~~~Gi~va~~~~v~~~~--------el~~~~~~~-g~p~VlKt 141 (375)
T COG0026 77 ALEKLAASVKV---FPSPDALRIAQDRLVEKQF---LDKAGLPVAPFQVVDSAE--------ELDAAAADL-GFPAVLKT 141 (375)
T ss_pred HHHHHHhhcCc---CCCHHHHHHHhhHHHHHHH---HHHcCCCCCCeEEeCCHH--------HHHHHHHHc-CCceEEEe
Confidence 34444444333 4889999999999999999 999999999999998743 355666788 59999999
Q ss_pred CCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 731 ARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 731 ~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
+.+| -++|..++++.+++... ...... ....++|+||+-+
T Consensus 142 r~gGYDGkGQ~~i~~~~~~~~~---~~~~~~--------------------~~~~vlE~fV~F~---------------- 182 (375)
T COG0026 142 RRGGYDGKGQWRIRSDADLELR---AAGLAE--------------------GGVPVLEEFVPFE---------------- 182 (375)
T ss_pred ccccccCCCeEEeeCcccchhh---Hhhhhc--------------------cCceeEEeecccc----------------
Confidence 9877 69999999998888741 111111 1233999999986
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg 889 (953)
+|++|-+..+.+....+.|..+....++++. ..+.|+. +++++.++.+++|.++++.|+
T Consensus 183 --------~EiSvi~aR~~~G~~~~yP~~eN~h~~gIl~----------~siaPa~---i~~~~~~~A~~~a~~i~~~L~ 241 (375)
T COG0026 183 --------REISVIVARSNDGEVAFYPVAENVHRNGILR----------TSIAPAR---IPDDLQAQAEEMAKKIAEELD 241 (375)
T ss_pred --------eEEEEEEEEcCCCCEEEecccceeeecCEEE----------EEEecCc---CCHHHHHHHHHHHHHHHHHcC
Confidence 5999998866444444455555443444443 3366876 588899999999999999999
Q ss_pred CcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 890 ~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
..|+.-|+||+.. +|++++||+-|+|-=+.
T Consensus 242 yvGVl~vE~Fv~~-dg~llvNEiAPRvHNSG 271 (375)
T COG0026 242 YVGVLAVEFFVTP-DGELLVNEIAPRVHNSG 271 (375)
T ss_pred ceEEEEEEEEEEC-CCcEEEeeccCCCCCcc
Confidence 9999999999995 68999999999886553
No 147
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.58 E-value=5.8e-14 Score=175.96 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=78.5
Q ss_pred CChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEE-eCC
Q 002207 666 PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR-LCC 744 (953)
Q Consensus 666 ~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~-v~~ 744 (953)
.+..++.+|+||..||++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||.++++|.||++ +.+
T Consensus 203 ~s~ia~~ia~DK~~tk~l---L~~~GIpvP~~~~~~s~~--------ea~~~~~~i-g~PvVVKP~~g~~G~GV~l~v~s 270 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEI---LSDAGVPVPEGTVVQSAE--------DAWEAAQDL-GYPVVIKPYDGNHGRGVTINILT 270 (864)
T ss_pred CcHHHHHHHcCHHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHc-CCCEEEEECCCCCccCEEEEeCC
Confidence 457899999999999999 999999999998886532 233455678 6999999999999999998 888
Q ss_pred cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccc
Q 002207 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795 (953)
Q Consensus 745 ~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~ 795 (953)
.+++.+ +++.++.. +..+|||+||+|+++
T Consensus 271 ~~el~~---a~~~a~~~-------------------~~~vlVEefI~G~e~ 299 (864)
T TIGR02068 271 RDEIES---AYEAAVEE-------------------SSGVIVERFITGRDH 299 (864)
T ss_pred HHHHHH---HHHHHHhh-------------------CCcEEEEEeccCCEE
Confidence 888875 56655543 467999999999833
No 148
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.58 E-value=5.4e-13 Score=149.07 Aligned_cols=297 Identities=15% Similarity=0.150 Sum_probs=174.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC----Cceeeeccccccc-CCCCCccccccccccccCc
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN----LNAYAISSAQVYS-NTPADFDFKLESLAQGFGS 152 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~----g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 152 (953)
|||++++ =+=...+....|...++.+.++.||+|..+..+.= +..+... ..... .... .++.
T Consensus 1 m~~~~~~-~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~-~~~~~~~~~~--~~~~--------- 67 (312)
T TIGR01380 1 LKVAFQM-DPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARA-RPVRVGPNKQ--DWYT--------- 67 (312)
T ss_pred CeEEEEe-CCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEE-EEEEeccCCc--ceee---------
Confidence 5788888 22234555666889999999999999987654221 1100000 00000 0000 0000
Q ss_pred chhHHHhhccCcCEEEEcCCCCCCCc----hHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecC
Q 002207 153 LSEFAEHLAANVDIVFPTIHGRFGED----GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG 228 (953)
Q Consensus 153 ~~~~~~~~~~~~D~vf~~lhG~~GEd----g~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~ 228 (953)
..+........+|+||+.....+.+. ..+-..+|..|++++ +++.+.+.|.||..+.+++. ++|++....+
T Consensus 68 ~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~ 142 (312)
T TIGR01380 68 LGEKVRLSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLVTRD 142 (312)
T ss_pred cCcccccccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEEeCC
Confidence 00000000126899999986665532 246788888999876 77899999999999887753 7999887654
Q ss_pred CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCC--CeEEEEEE
Q 002207 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG--GSEFTAIV 306 (953)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~G--g~E~tv~V 306 (953)
.+ .+.++++. . +|+|+||..|++|.||.++...+.......+.+.......+++|+||+. +.|+++.|
T Consensus 143 ~~----~~~~~~~~-----~-g~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~v 212 (312)
T TIGR01380 143 KA----EIRAFLAE-----H-GDIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILL 212 (312)
T ss_pred HH----HHHHHHHH-----c-CCEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEE
Confidence 32 23444332 2 3899999999999999998753211112222222112457999999962 27999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
++ + +++.-. +.-.+ .. -+|+.....|+ ...|..++++.. +|.+.+..+++++|+. |
T Consensus 213 v~----g--~vv~~a---i~R~~--------~~--gd~r~N~~~Gg---~~~~~~l~~e~~-~ia~~~~~~~~~~gl~-~ 268 (312)
T TIGR01380 213 ID----G--EPIGAA---VARIP--------AG--GEFRGNLAVGG---RGEATELSERDR-EICADVAPELKRRGLL-F 268 (312)
T ss_pred EC----C--eEEEEE---EEecC--------CC--CCccccccCCc---eeeccCCCHHHH-HHHHHHHHHHHhcCCc-E
Confidence 94 2 222101 11111 11 14666666554 234556777652 3333333334667775 9
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCC-CCCCCcchHHHHHHHhCCCHHHHHHHHHH
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI-SGMEQTSFLFQQASKVGFSHSNILRTIIG 453 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~-PG~t~~S~~p~~a~~~G~s~~~ll~~li~ 453 (953)
++||++ | .+|+|||.. |. .+..+..++|++..+.+-..++
T Consensus 269 agVDii---------------------g-~~v~EvN~~~p~-----~~~~~~~~~g~~ia~~i~d~l~ 309 (312)
T TIGR01380 269 VGIDVI---------------------G-GYLTEVNVTSPT-----GIREIDRQKGVNIAGMLWDAIE 309 (312)
T ss_pred EEEEEe---------------------C-CEEEEEecCCcc-----hHHHHHhhhCCCHHHHHHHHHH
Confidence 999974 2 379999975 32 3334556789998766655554
No 149
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.57 E-value=7.9e-14 Score=142.72 Aligned_cols=182 Identities=17% Similarity=0.189 Sum_probs=126.1
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcE-EEecCCCCCCcceEEeCCcccHHHHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL-CVKPARDGCSTGVARLCCAEDLTVYVKA 754 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Pl-vVKP~~~gsS~GV~~v~~~~eL~~~~~a 754 (953)
+|.++|++ |+++||||+++..+++.+ ...++.++. .+|+ ||||....++.||.++.+.++.. ++
T Consensus 2 SK~faK~f---m~~~~IPTa~~~~f~~~~--------~A~~~l~~~-~~p~~ViKadGla~GKGV~i~~~~~eA~---~~ 66 (194)
T PF01071_consen 2 SKSFAKEF---MKRYGIPTAKYKVFTDYE--------EALEYLEEQ-GYPYVVIKADGLAAGKGVVIADDREEAL---EA 66 (194)
T ss_dssp BHHHHHHH---HHHTT-SB--EEEESSHH--------HHHHHHHHH-SSSEEEEEESSSCTTTSEEEESSHHHHH---HH
T ss_pred CHHHHHHH---HHHcCCCCCCeeEECCHH--------HHHHHHHhc-CCCceEEccCCCCCCCEEEEeCCHHHHH---HH
Confidence 68999999 999999999999987633 234455666 6888 99999999999999998766655 46
Q ss_pred HHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceee
Q 002207 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 834 (953)
Q Consensus 755 l~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~ 834 (953)
+++.+.. ..+. .....+|||||++|. |+++.++.++.....+
T Consensus 67 l~~~~~~---~~fg----------~~~~~vvIEE~l~G~-------------------------E~S~~a~~dG~~~~~l 108 (194)
T PF01071_consen 67 LREIFVD---RKFG----------DAGSKVVIEEFLEGE-------------------------EVSLFALTDGKNFVPL 108 (194)
T ss_dssp HHHHHTS---STTC----------CCGSSEEEEE---SE-------------------------EEEEEEEEESSEEEEE
T ss_pred HHHhccc---cccC----------CCCCcEEEEeccCCe-------------------------EEEEEEEEcCCeEEEC
Confidence 7777642 0111 125789999999997 9999999987665444
Q ss_pred CceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHH-HHHHHHHHc-----CCcceEEEEEEEEcCCCcEE
Q 002207 835 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQ-RIELIANAL-----QLEGFSRIDAFVNVDNGEVL 908 (953)
Q Consensus 835 ~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~-~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~ 908 (953)
++.... ...|+-+.--+.|....+.|.+. ++++..+++.+ +.+.+.++| .++|+..+.++++. +| ++
T Consensus 109 p~aqD~---Kr~~dgd~GpnTGGMGa~sp~p~--~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~-~G-p~ 181 (194)
T PF01071_consen 109 PPAQDH---KRLFDGDTGPNTGGMGAYSPVPF--ITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTE-DG-PK 181 (194)
T ss_dssp EEBEEE---EEEETTTEEEEESESEEEESTTT--S-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEET-TE-EE
T ss_pred cchhcc---ccccCCCCCCCCCCccceeeccc--CCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeC-CC-cE
Confidence 433322 23455554555556677888774 68888777776 666666555 56799999999994 44 99
Q ss_pred EEeeCCCCC
Q 002207 909 IIEVNTVPG 917 (953)
Q Consensus 909 viEINt~PG 917 (953)
|||.|.+.|
T Consensus 182 vlEfN~RfG 190 (194)
T PF01071_consen 182 VLEFNVRFG 190 (194)
T ss_dssp EEEEESSGS
T ss_pred EEEEeCCCC
Confidence 999999876
No 150
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.57 E-value=2.2e-13 Score=151.02 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=150.9
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCC-------CCccCeEEEeCcccc
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG-------VLTINKDVRRKEDLL 706 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~G-------Iptp~~~~v~~~~~~ 706 (953)
.+|+|+.=+.+.....-....++|..|+|.+- ++.+...|.||..|.++ |+++| ||+|+++++.+.+..
T Consensus 66 pfDvilhK~~~~~~~~~~~~~~~e~pgv~vid-p~~ai~~~~dR~~~~~~---L~~~~~~~~~~~i~~P~t~v~~~~~~a 141 (328)
T PLN02941 66 PFDVILHKLYGKEWRQQLEEYREKHPDVTVLD-PPDAIQRLHNRQSMLQV---VADLKLSDGYGSVGVPKQLVVYDDESS 141 (328)
T ss_pred CcCEEEEecCCHHHHHHHHHHHHHCCCcEEEC-CHHHHHHHHHHHHHHHH---HHHcCCcccCCCCCCCCEEEEcCHHHH
Confidence 46888887766433332344566788999875 56889999999999998 89999 999999998775420
Q ss_pred CCchhhHHHHHHhhcCCCcEEEecCCC---CCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCe
Q 002207 707 KTPIVDIWHELTSKLQCKTLCVKPARD---GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 783 (953)
Q Consensus 707 ~~~~~~~~~~~~~~lg~~PlvVKP~~~---gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~ 783 (953)
... ....+++ +||+|+||..+ ..|.++.++.+.+.|.. + ..+
T Consensus 142 ----l~~-~~~~~~l-~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~--------l---------------------~~p 186 (328)
T PLN02941 142 ----IPD-AVALAGL-KFPLVAKPLVADGSAKSHKMSLAYDQEGLSK--------L---------------------EPP 186 (328)
T ss_pred ----HHH-HHHHhcC-CCCEEEeecccCCCccccceEEecCHHHHHh--------c---------------------CCc
Confidence 111 1224678 69999999998 67899999998877653 1 246
Q ss_pred EEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCce--eeCceEE---EecCCcccccc--ccccCC
Q 002207 784 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH--SLMPSVT---VKESGDILSLE--EKFQGG 856 (953)
Q Consensus 784 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~--~~~p~~~---i~~~~~~~d~~--~Ky~~g 856 (953)
+++||||.-. ++.|.|-|+|+.-... .-.|.+. .....+.+.|. .+...+
T Consensus 187 ~~lQEfVnh~-----------------------g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~ 243 (328)
T PLN02941 187 LVLQEFVNHG-----------------------GVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAAS 243 (328)
T ss_pred EEEEEecCCC-----------------------CEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccc
Confidence 9999999531 2477777777641000 0001110 00011222221 111111
Q ss_pred Cc-ee---EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCC-CcEEEEeeCCCCCCCCCchHHHHHHhc
Q 002207 857 TG-IN---LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-GEVLIIEVNTVPGMTPSTVLIHQALSE 931 (953)
Q Consensus 857 ~~-~~---~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~-g~~~viEINt~PGlt~~S~l~~~a~~~ 931 (953)
.. .. ..|.. .+-...+.++++|.++.++||+. ++.||++.+.++ ++++|+|||..||+-..-
T Consensus 244 ~~~~~~~~~~~~~---~~~p~~~~l~~La~~~r~alGl~-l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p--------- 310 (328)
T PLN02941 244 ADDADNGGLDPEV---AELPPRPFLEDLARELRRRLGLR-LFNFDMIREHGTGDRYYVIDINYFPGYAKMP--------- 310 (328)
T ss_pred ccccccccccccc---ccCCChHHHHHHHHHHHHHhCCc-eEEEEEEeecCCCCceEEEEecCCCccccCC---------
Confidence 10 00 00111 01112346899999999999997 889999988533 478999999999998764
Q ss_pred CCCCCHHHHHHHHHHHH
Q 002207 932 QPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 932 ~~~~yp~~l~~~li~~a 948 (953)
.|...|.+-++++.
T Consensus 311 ---~~~~~l~~~~~~~~ 324 (328)
T PLN02941 311 ---GYETVLTDFLLSLV 324 (328)
T ss_pred ---chHHHHHHHHHHHH
Confidence 56555555555543
No 151
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.55 E-value=4.4e-13 Score=147.65 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=130.0
Q ss_pred CCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC
Q 002207 644 GGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723 (953)
Q Consensus 644 G~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~ 723 (953)
|-+|.+...-.+...+|-+ ...-+|.||..|..+ |+++|||||+++.+...+. ..+.+.++.. +
T Consensus 11 ~~~~~~~~~~~~~~~~N~r------~~~~~~~DK~~t~~l---L~~aglpvP~T~~~~s~~~----~~~~l~~~~~---~ 74 (317)
T TIGR02291 11 GIMGMNKRNADYILRYNKR------SLYPLVDDKLKTKII---AQAAGITVPELYGVIHNQA----EVKTIHNIVK---D 74 (317)
T ss_pred CccccCcchHHHHHhcCCc------hhccccccHHHHHHH---HHHcCCCCCCEEEecCchh----hHHHHHHHHc---c
Confidence 3455555555555555443 445779999999998 9999999999887765431 1122333332 3
Q ss_pred C-cEEEecCCCCCCcceEEeCCcccH---------------HHHHH-HHHHHHhhCCCCCcccccccccCCCCCCCeEEE
Q 002207 724 K-TLCVKPARDGCSTGVARLCCAEDL---------------TVYVK-ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786 (953)
Q Consensus 724 ~-PlvVKP~~~gsS~GV~~v~~~~eL---------------~~~~~-al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlV 786 (953)
+ |+||||..+..+.||.++++.++. +.... ++...+... ...+.+++
T Consensus 75 ~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~----------------~~~~~~lv 138 (317)
T TIGR02291 75 HPDFVIKPAQGSGGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLG----------------GKNDVALI 138 (317)
T ss_pred CCCEEEEECCCCCccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhcc----------------CCCcEEEE
Confidence 4 699999999999999999776543 22111 111111110 01235777
Q ss_pred eccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecC-CccccccccccCCCce------
Q 002207 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES-GDILSLEEKFQGGTGI------ 859 (953)
Q Consensus 787 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~-~~~~d~~~Ky~~g~~~------ 859 (953)
|+++...+.. ..+ +...|+.+.|-++++.. .....+.... ++ +...++.|...
T Consensus 139 E~~i~~~~~~----------~~~---~~~~v~diRV~vv~~~~----vaa~~R~~~~~~~---~~tN~~~Gg~~~~vdl~ 198 (317)
T TIGR02291 139 EYRVKFDPCF----------DGF---SYEGVPDIRIIVFKGYP----VMAMMRLPTRASD---GKANLHQGAVGVGIDLA 198 (317)
T ss_pred EeeccCCcch----------hcc---ccCCCCCEEEEEECCEE----EEEEEEccCccCC---cccccccCCceeeeecC
Confidence 7665432100 000 00112355555554321 0001111100 01 11111111100
Q ss_pred --------------eEcCC---CCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 860 --------------NLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 860 --------------~~~P~---~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
...|. +...+.-+..+++.++|.++++++|| |++++|++++. ++.++|+|||+.||||
T Consensus 199 tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~-~~g~~VlEVN~~Pg~t--- 273 (317)
T TIGR02291 199 TGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDK-EEGPLVLELNARPGLA--- 273 (317)
T ss_pred CCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeC-CCCEEEEEeCCCCCCC---
Confidence 00111 00012235567899999999999999 89999999985 5789999999999999
Q ss_pred hHHHHHHhcCCCCCHH
Q 002207 923 VLIHQALSEQPPMYPH 938 (953)
Q Consensus 923 ~l~~~a~~~~~~~yp~ 938 (953)
++.|.++ +++|.
T Consensus 274 --~~~a~~~--Gl~~~ 285 (317)
T TIGR02291 274 --IQIANGA--GLLPR 285 (317)
T ss_pred --HHHHHHC--CCcHH
Confidence 3344444 36764
No 152
>PRK05246 glutathione synthetase; Provisional
Probab=99.53 E-value=2.7e-12 Score=143.88 Aligned_cols=294 Identities=16% Similarity=0.151 Sum_probs=172.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec---C-CceeeecccccccCCCCCccccccccccccCcc
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR---N-LNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~---~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
|||++++ =+=...+....|...++++.++.||+|+.+.... . +................. ++.......+
T Consensus 2 ~~~~~~~-~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~--w~~~~~~~~~--- 75 (316)
T PRK05246 2 MKVAFQM-DPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGD--WYELGEEQRL--- 75 (316)
T ss_pred ceEEEEe-CCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCcc--ceeccccccC---
Confidence 6888888 3333455666678889999999999998765321 0 100000000000000000 0000000000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCc----hHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCC
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGED----GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGS 229 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEd----g~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~ 229 (953)
. ...+|+||+.....+.+. ..+-..++..|++++ +++.+...+.||..+.+++. ++|++....+.
T Consensus 76 -----~-l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~ 144 (316)
T PRK05246 76 -----P-LADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK 144 (316)
T ss_pred -----c-cccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH
Confidence 0 125899998876555532 235677888899887 56889999999999988755 78888776543
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCC-HHHHHHHHHHhHhcCCCCcEEEeccCCC--CeEEEEEE
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG-VIDSLKKAKGIILEGIDDRVVVELFLEG--GSEFTAIV 306 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~-~~el~~~a~~~~~~~~~~~vlVEefI~G--g~E~tv~V 306 (953)
+ .+.+++++ . +|+|+||..|++|.||.++.. ..++. ...+.+.......+|+|+||+. +.+++|.|
T Consensus 145 ~----~~~~~~~~-----~-~~vVlKP~~G~~G~gV~~i~~~~~~~~-~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~v 213 (316)
T PRK05246 145 A----EIRAFRAE-----H-GDIILKPLDGMGGAGIFRVKADDPNLG-SILETLTEHGREPVMAQRYLPEIKEGDKRILL 213 (316)
T ss_pred H----HHHHHHHH-----C-CCEEEEECCCCCccceEEEeCCCccHH-HHHHHHHHccCCeEEEEeccccCCCCCEEEEE
Confidence 2 23344332 2 389999999999999999954 22221 1122222223468999999964 36899999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHH---HHhCC
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF---QRLGL 383 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~---~aLg~ 383 (953)
++ | +++.. . +.-.+ .. -+|+.....|+ . ..|..++++. +++|.++. +.+|+
T Consensus 214 v~---g---~vv~~-a--~~R~~--------~~--~~~rtN~~~Gg-~--~~~~~l~~~~----~~ia~~~~~~l~~~gl 267 (316)
T PRK05246 214 VD---G---EPVGY-A--LARIP--------AG--GETRGNLAAGG-R--GEATPLTERD----REICAAIGPELKERGL 267 (316)
T ss_pred EC---C---EEhhh-e--eEecC--------CC--CCcccCccCCc-e--EeccCCCHHH----HHHHHHHHHHHHHhCC
Confidence 83 1 21110 1 11111 11 25666665554 2 3455677654 45555555 56666
Q ss_pred CCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCC-CCCCCcchHHHHHHHhCCCHHHHHHHHHH
Q 002207 384 CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI-SGMEQTSFLFQQASKVGFSHSNILRTIIG 453 (953)
Q Consensus 384 ~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~-PG~t~~S~~p~~a~~~G~s~~~ll~~li~ 453 (953)
. +++||++ |. ||+|||.. |+ .+-.+.+++|++..+.+-.-++
T Consensus 268 ~-~~GVDli---------------------~~-~l~EvN~~~p~-----~~~~~~~~tg~~ia~~i~~~~~ 310 (316)
T PRK05246 268 I-FVGIDVI---------------------GD-YLTEINVTSPT-----GIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred C-EEEEEEe---------------------CC-EEEEEeCCCch-----HHHHHHHHhCCCHHHHHHHHHH
Confidence 4 9999974 22 69999964 64 2445567889998665544443
No 153
>PRK12458 glutathione synthetase; Provisional
Probab=99.52 E-value=1.6e-12 Score=146.50 Aligned_cols=228 Identities=14% Similarity=0.147 Sum_probs=145.0
Q ss_pred CcCEEEEcCCCCCCCch--HHH-------HHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 163 NVDIVFPTIHGRFGEDG--GIQ-------EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg--~iq-------~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.+|+||+.....+..+. .+. .+++..|++++ +++.+...|.||..+..+++ +++|++++..+.+
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~--- 151 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHISRNKE--- 151 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCHH---
Confidence 68999998865554322 122 44467899776 78999999999999976655 6788887765432
Q ss_pred hhhhhhhhhcCCCCCCC-cEEEeeCCCCCceeEEEeCCHHH-HHHHHHHhHhcCCCCcEEEeccCCC--CeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVELFLEG--GSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~-PvvVKP~~~gsS~GV~~v~~~~e-l~~~a~~~~~~~~~~~vlVEefI~G--g~E~tv~Vl~~ 309 (953)
.+.++++. .++ |+||||..|.+|.||.++++.++ ....+.+.+. ....+|+|+||++ ..++.+.+++
T Consensus 152 -~~~~~~~~-----~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~--~~~~~ivQeyI~~~~~gDiRv~vv~- 222 (338)
T PRK12458 152 -YIREFLEE-----SPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYS--GDGYVIAQEYLPGAEEGDVRILLLN- 222 (338)
T ss_pred -HHHHHHHH-----cCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHh--hCCCEEEEEcccCCCCCCEEEEEEC-
Confidence 23344332 444 59999999999999999986553 2223333222 1357999999974 2578888884
Q ss_pred CCCCccccE----EecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh---C
Q 002207 310 GSGFDCHPV----VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL---G 382 (953)
Q Consensus 310 ~~g~~~~~v----~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL---g 382 (953)
++++ .... +.-.+ . --+++.....++. ..+..+++++ +++|.++..+| |
T Consensus 223 -----g~~v~~~g~~~a--~~R~~--------~--~~d~RsN~~~Gg~---~~~~~l~~~~----~~ia~~~~~~l~~~G 278 (338)
T PRK12458 223 -----GEPLERDGHYAA--MRRVP--------A--GGDVRSNVHAGGS---VVKHTLTKEE----LELCEAIRPKLVRDG 278 (338)
T ss_pred -----CEEEeeccceeE--EEEec--------C--CCCeeecccCCCc---ccCcCCCHHH----HHHHHHHHHHHhhcC
Confidence 1232 0011 11011 0 1245555554442 2455576665 56666666666 6
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecC-CCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL-ISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~-~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+. +++||++ | .+++|||+ .|| .++.+...+|+++.+.+-.-|+..+.+
T Consensus 279 L~-~~gVDli---------------------~-~~l~EIN~~sp~-----g~~~~~~~~g~d~a~~i~~~i~~~~~~ 327 (338)
T PRK12458 279 LF-FVGLDIV---------------------G-DKLVEVNVFSPG-----GLTRINKLNKIDFVEDIIEALERKVQR 327 (338)
T ss_pred Ce-EEeEEEE---------------------C-CEEEEEeCCCcc-----hHHHHHHHhCCCHHHHHHHHHHHHHhH
Confidence 64 9999974 1 25899997 574 345566778999977776666665544
No 154
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.51 E-value=4.9e-13 Score=142.24 Aligned_cols=279 Identities=17% Similarity=0.163 Sum_probs=166.4
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE--EecCCceeeecccccccCCCCCccccccccccccCcch
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY--IDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLS 154 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~--id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (953)
..||+|+. .-.+.|.+.+.+.||+|+.+. .+.|...+.+. -++........- .++..+ .-+.
T Consensus 11 ~~kiLviG-----------vntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~--~l~~r~~~~~~r-fe~~de--~~li 74 (389)
T COG2232 11 SCKILVIG-----------VNTRPVVESASKLGFEVYSVQYYDPADLPGDAIS--YLRERPGELLGR-FENLDE--QKLI 74 (389)
T ss_pred cceEEEEe-----------ecchHhHHHHHhcCeEEEEeEeecccccccccce--EEEecChhhcCc-ccCCCH--HHHH
Confidence 46888886 126889999999999998653 33332211100 000000000000 000000 0011
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHH-HHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR-ACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~-a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
+.+..+...+|+.|..+.|.-.++... .++.++.|+++. ....+.+|..+.+.+...|+|.|+.......
T Consensus 75 ~~~~~~~~dvD~~ii~~sg~e~l~~~g-----~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e~~---- 145 (389)
T COG2232 75 EAAEDLAEDVDAPIIPFSGFEALRTSG-----ELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIEPL---- 145 (389)
T ss_pred HHHHhhhhhcceeeeeccccccccccC-----ccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhhhh----
Confidence 233445668999777776644433211 345678888888 7888899999999999999999876443211
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
..--.++|.||.+|++++ +.++.-.++. ....+|.|+||+| +-++|.++.++ .
T Consensus 146 ------------~~gekt~IlKPv~GaGG~-~el~~~~Ee~-----------~~~~~i~Qefi~G-~p~Svs~is~g--~ 198 (389)
T COG2232 146 ------------EEGEKTLILKPVSGAGGL-VELVKFDEED-----------PPPGFIFQEFIEG-RPVSVSFISNG--S 198 (389)
T ss_pred ------------hhcceeeEEeeccCCCce-eeeccccccc-----------CCcceehhhhcCC-ceeEEEEEecC--c
Confidence 112348999999999985 2222211221 1257999999998 99999999643 2
Q ss_pred ccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeee
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 393 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~ 393 (953)
+ ...+...+..+.. ......-|-|..+. +|. +.+..++++++|..+...||+.|...|||++
T Consensus 199 ~--a~~la~N~QiI~~-----~~~~~~~f~Y~GNl---------TP~--~~~~~ee~e~la~elV~~lgL~GsnGVDfvl 260 (389)
T COG2232 199 D--ALTLAVNDQIIDG-----LRGEYSQFVYKGNL---------TPF--PYEEVEEAERLAEELVEELGLVGSNGVDFVL 260 (389)
T ss_pred c--eEEEEEeeeeecc-----cccccccceeccCc---------CCC--cchhhHHHHHHHHHHHHHhccccccccceEe
Confidence 2 3333333333211 00000111232222 443 2233378899999999999999999999976
Q ss_pred cCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHH
Q 002207 394 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 447 (953)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~l 447 (953)
++.| +|++||||++.-| +=-+...+|++.-++
T Consensus 261 -----------------~d~g-pyViEVNPR~qGt----~e~iE~s~giNl~~l 292 (389)
T COG2232 261 -----------------NDKG-PYVIEVNPRIQGT----LECIERSSGINLFRL 292 (389)
T ss_pred -----------------ecCC-cEEEEecCcccch----HHHHHHhcCCCHHHH
Confidence 4555 9999999988633 233556789975433
No 155
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.50 E-value=2.3e-13 Score=139.99 Aligned_cols=185 Identities=17% Similarity=0.146 Sum_probs=137.4
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
+++|..+....-..|+-=.+....|.. +--+||++.|++.|.||+.+.+.|+.+ +++|++.-...
T Consensus 72 e~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~~------------- 136 (307)
T COG1821 72 EKADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREWAE------------- 136 (307)
T ss_pred hcCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCcccccc-------------
Confidence 489988887754444333556777777 777899999999999999999999999 99998753211
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEec
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~ 321 (953)
..-.+||||+.+.+|.|+....+..+. .|+|+||+| ..++|.+.. |....|. .
T Consensus 137 ------~~~k~ViKp~dgCgge~i~~~~~~pd~---------------~i~qEfIeG-~~lSVSL~~---GEkv~pL--s 189 (307)
T COG1821 137 ------EPKKYVIKPADGCGGEGILFGRDFPDI---------------EIAQEFIEG-EHLSVSLSV---GEKVLPL--S 189 (307)
T ss_pred ------CCceEEecccccCCcceeeccCCCcch---------------hhHHHhcCC-cceEEEEec---CCccccc--e
Confidence 223589999999999999887776552 478999998 999999653 3332222 1
Q ss_pred ceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhC-CCCeeEeeeeecCCCCcc
Q 002207 322 PTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG-LCDFARIDGWFLPSSTHV 400 (953)
Q Consensus 322 ~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg-~~G~arVDf~~~~~~~~~ 400 (953)
..+. + -.|+..+-+|..+ +++++.++.+.+.+.|.++.+.++ |+||..||+++
T Consensus 190 vNrQ---f---------i~~~~~~~~y~gg-------~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVl------- 243 (307)
T COG1821 190 VNRQ---F---------IIFAGSELVYNGG-------RTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVL------- 243 (307)
T ss_pred echh---h---------hhhccceeeeccC-------cCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEe-------
Confidence 1110 0 0233444555532 456788999999999999999995 99999999876
Q ss_pred ccccccccCcccCCcEEEEeecCCCC
Q 002207 401 FSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 401 ~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
. +.+|++||||+|-
T Consensus 244 -----------s-D~pYvIEINpR~T 257 (307)
T COG1821 244 -----------S-DEPYVIEINPRPT 257 (307)
T ss_pred -----------c-CCcEEEEecCCCC
Confidence 2 4699999999886
No 156
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.50 E-value=7.9e-13 Score=146.34 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=151.0
Q ss_pred EEecCCCCCCccHHHHHHHHcCCCEeCCChHHHH-HhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHH
Q 002207 639 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK-TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHEL 717 (953)
Q Consensus 639 f~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~-l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~ 717 (953)
+.+=||.+-+--.+..+...+.+|+.|+-.+--. --.||..+.++ |+++||++|+.+. +.
T Consensus 88 i~iPh~sf~~y~g~~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~---L~~aGI~~Pk~~~-~p--------------- 148 (366)
T PRK13277 88 IFVPNRSFAVYVGYDAIENEFKVPIFGNRYLLRWEERTGEKNYYWL---LEKAGIPYPKLFK-DP--------------- 148 (366)
T ss_pred EEecCCCeEEEecHHHHhhcCCCCcccCHHHhhhhhccCHHHHHHH---HHHcCCCCceeec-Cc---------------
Confidence 3344787776555666655799999998754222 22688888777 8999999999764 11
Q ss_pred HhhcCCCcEEEecCCCCC--CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccc
Q 002207 718 TSKLQCKTLCVKPARDGC--STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 795 (953)
Q Consensus 718 ~~~lg~~PlvVKP~~~gs--S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~ 795 (953)
+++ .+|+||||..+.+ |+|++++++.+|+... .+..... +.|. ......++|||||.|.
T Consensus 149 -~eI-d~PVIVKp~~asG~~srG~f~a~s~eEl~~~---a~~l~~~----------g~I~--~~~~~~~iIQEyI~G~-- 209 (366)
T PRK13277 149 -EEI-DRPVIVKLPEAKRRLERGFFTASSYEDFYEK---SEELIKA----------GVID--REDLKNARIEEYVIGA-- 209 (366)
T ss_pred -ccc-CccEEEEECCCCCccccCeEeeCCHHHHHHH---HHhhhhc----------Cccc--ccccccceeEeccCCC--
Confidence 234 6899999999999 9999999999998763 2222110 1110 0012567899999997
Q ss_pred ccccccccccchhhhhcCCCceeEEEEEEEcC--CCCceeeCceEEEec-CCccccccccccC----CC--cee-EcCCC
Q 002207 796 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGK--CGSMHSLMPSVTVKE-SGDILSLEEKFQG----GT--GIN-LTPPP 865 (953)
Q Consensus 796 ~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~--~~~~~~~~p~~~i~~-~~~~~d~~~Ky~~----g~--~~~-~~P~~ 865 (953)
|+++.++-+ .+....+.+..++.. -.++...-++-+- .. ... ..|..
T Consensus 210 -----------------------ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t 266 (366)
T PRK13277 210 -----------------------HFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT 266 (366)
T ss_pred -----------------------EEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEcCcccc
Confidence 888888866 343332222222221 1223333222110 00 000 13443
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC------CcceEEEEEEEEcCCCcEEEEeeCC-CCCCCCCchHHHHHHhcCCCCCHH
Q 002207 866 ASIMSTEALDKCKQRIELIANALQ------LEGFSRIDAFVNVDNGEVLIIEVNT-VPGMTPSTVLIHQALSEQPPMYPH 938 (953)
Q Consensus 866 ~~~l~~~~~~~i~~~a~~~~~aLg------~~G~ariDf~v~~~~g~~~viEINt-~PGlt~~S~l~~~a~~~~~~~yp~ 938 (953)
+.+.+++++.+.++++.++++ +.|...+|++++. ++++|++|||+ .+|=|+.+ .+.|..||.
T Consensus 267 ---~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~-d~~~~V~EInpR~gGGtnl~-------~~aGs~y~~ 335 (366)
T PRK13277 267 ---IRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP-DLDFVVYDVAPRIGGGTNVY-------MGVGSPYSK 335 (366)
T ss_pred ---chHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC-CCcEEEEEEcCCcCCCccce-------eecCCCcHH
Confidence 567799999999999999976 6899999999984 69999999998 46666654 222445765
Q ss_pred HHHH
Q 002207 939 QFFR 942 (953)
Q Consensus 939 ~l~~ 942 (953)
.++.
T Consensus 336 l~~~ 339 (366)
T PRK13277 336 LYFG 339 (366)
T ss_pred HHhc
Confidence 5543
No 157
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.47 E-value=8.9e-13 Score=135.70 Aligned_cols=216 Identities=20% Similarity=0.182 Sum_probs=147.7
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCcc
Q 002207 625 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 704 (953)
Q Consensus 625 ~~~~~~~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~ 704 (953)
.++++...++.|..+.+-.-..|.--++-...|.+ +--.||++.|.++|.||+.|.+. |+.+ +++|+..-+..
T Consensus 64 ~~~~ek~le~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~a---Lr~a-V~~p~t~e~~~-- 136 (307)
T COG1821 64 LRDEEKALEKADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKA---LRDA-VKQPPTREWAE-- 136 (307)
T ss_pred HHHHHHHHhcCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHH---Hhhh-ccCCCcccccc--
Confidence 35565556678877777654444434677888888 77789999999999999999998 8888 99998753211
Q ss_pred ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeE
Q 002207 705 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784 (953)
Q Consensus 705 ~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~v 784 (953)
. +--+||||+++.++.|+....+..++ .
T Consensus 137 ----------------~-~~k~ViKp~dgCgge~i~~~~~~pd~-----------------------------------~ 164 (307)
T COG1821 137 ----------------E-PKKYVIKPADGCGGEGILFGRDFPDI-----------------------------------E 164 (307)
T ss_pred ----------------C-CceEEecccccCCcceeeccCCCcch-----------------------------------h
Confidence 1 34579999999999999887654442 4
Q ss_pred EEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCC
Q 002207 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 864 (953)
Q Consensus 785 lVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~ 864 (953)
|+|+||+|. .++|++... .....+ ++ ..+--.|+..+-+|.+|. +|
T Consensus 165 i~qEfIeG~-------------------------~lSVSL~~G-Ekv~pL--sv-NrQfi~~~~~~~~y~gg~----~p- 210 (307)
T COG1821 165 IAQEFIEGE-------------------------HLSVSLSVG-EKVLPL--SV-NRQFIIFAGSELVYNGGR----TP- 210 (307)
T ss_pred hHHHhcCCc-------------------------ceEEEEecC-Cccccc--ee-chhhhhhccceeeeccCc----CC-
Confidence 678899997 777774432 222111 11 011112444556677663 23
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcC-CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 865 PASIMSTEALDKCKQRIELIANALQ-LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 865 ~~~~l~~~~~~~i~~~a~~~~~aLg-~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++.++.+++.+.|.++.+.++ |.||..||+.+. +++|++|||++|--+-.. .+ --+|..+-+-
T Consensus 211 ----i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls---D~pYvIEINpR~TTp~vg----~s-----r~~~~sv~~L 274 (307)
T COG1821 211 ----IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS---DEPYVIEINPRPTTPTVG----LS-----RVTPESVAEL 274 (307)
T ss_pred ----CCcHHHHHHHHHHHHHHHhhccccceeeEEEEec---CCcEEEEecCCCCcceee----ee-----ccccHHHHHH
Confidence 356889999999999999995 999999999885 579999999887533221 00 0255566665
Q ss_pred HHHHHh
Q 002207 944 VLDLGS 949 (953)
Q Consensus 944 li~~a~ 949 (953)
|++...
T Consensus 275 Ll~~~~ 280 (307)
T COG1821 275 LLEGPT 280 (307)
T ss_pred HhcCcc
Confidence 655443
No 158
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.42 E-value=4e-12 Score=154.04 Aligned_cols=223 Identities=19% Similarity=0.306 Sum_probs=166.0
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE----Ee-------
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV----RR------- 701 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~----v~------- 701 (953)
-.+|.||.. .|--.|+-.++.+|...||-|.||+..|+.-.-||.....+ .+.+||||.+|-- +.
T Consensus 136 ~~VdAVWaG-WGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIv---AQsa~vPtlpWSGS~v~~~~~~~~~~ 211 (2196)
T KOG0368|consen 136 TDVDAVWAG-WGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTII---AQSAGVPTLPWSGSGVKVEHIEDKTN 211 (2196)
T ss_pred cccceEeec-ccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHH---HHhcCCCcccccCCcceeeeecccCC
Confidence 457888865 46677999999999999999999999999999999999988 8999999999831 10
Q ss_pred ----CccccCC----chhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCccccccc
Q 002207 702 ----KEDLLKT----PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM 773 (953)
Q Consensus 702 ----~~~~~~~----~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~ 773 (953)
++|...+ +.++-++ ..+++ |||+++|.+.|||+.||.+|++.+|+..+.+.++. ..
T Consensus 212 ~v~Vpedly~Kacv~~~eegLe-aae~I-GfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~---Ev----------- 275 (2196)
T KOG0368|consen 212 LVSVPEDLYEKACVRNVEEGLE-AAEKI-GFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQN---EV----------- 275 (2196)
T ss_pred eEecCHHHhhhhhcCCHHHHHH-HHHhc-CCceEEEeccCCCCcceeeccchHHHHHHHHHHHh---hC-----------
Confidence 0111000 2233333 34568 69999999999999999999999999865444433 22
Q ss_pred ccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCcccccccc
Q 002207 774 IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEK 852 (953)
Q Consensus 774 ~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~K 852 (953)
|..++.+.+...+. |.++|.+++++ |..+++.+. +..
T Consensus 276 ------PGSPIFlMK~a~~A------------------------RHlEVQlLaDqYGn~IsLfgR------------DCS 313 (2196)
T KOG0368|consen 276 ------PGSPIFLMKLADQA------------------------RHLEVQLLADQYGNVISLFGR------------DCS 313 (2196)
T ss_pred ------CCCceeeeecccCc------------------------ceeeeehhhhhcCCEeEeecc------------cch
Confidence 26788888888875 69999999986 333344322 111
Q ss_pred ccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCC
Q 002207 853 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917 (953)
Q Consensus 853 y~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PG 917 (953)
.|......+.-+|+++.+.+..+++++.|.++++..|..+.+.|++...+++|++||+|.||+--
T Consensus 314 iQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQ 378 (2196)
T KOG0368|consen 314 IQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRLQ 378 (2196)
T ss_pred HHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCcccc
Confidence 11111122333445557899999999999999999999999999999998889999999997543
No 159
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.39 E-value=7.7e-11 Score=133.09 Aligned_cols=226 Identities=15% Similarity=0.170 Sum_probs=157.5
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++.+|.+--. ...-..+.+.|...|||..|++..++.+-.+|..+|.+|.++||||+.|..+.+.+..+ .+++
T Consensus 67 ~~I~lVvvGPE--~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~----sfi~ 140 (788)
T KOG0237|consen 67 HNINLVVVGPE--LPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAK----SFIQ 140 (788)
T ss_pred cceeEEEECCc--hhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHH----HHHH
Confidence 45666665432 11123477899999999999999999999999999999999999999999998765433 3333
Q ss_pred hcCCCCCC-CcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 242 TNKLDPNS-GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 242 ~~~l~~~~-~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
. .. .++|||..-...++||.+..+.+|+.+++..++.. .-...++|||+++| .|+++-.+-|+..
T Consensus 141 ~-----~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laftDG~s---- 210 (788)
T KOG0237|consen 141 S-----ATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAFTDGYS---- 210 (788)
T ss_pred h-----CCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCc-ceEEEEEEecCcc----
Confidence 2 34 47999999999999999999999999998887642 13468999999998 9999999965432
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHH-HHHHHHHHhCCCC--eeEeeee
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIRE-GASLLFQRLGLCD--FARIDGW 392 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~-~a~~~~~aLg~~G--~arVDf~ 392 (953)
...++|.. +..+.+|-+.--..++ +.-.+|++ .++++.+.+++ +.++..+-+--+| |..|=|-
T Consensus 211 ~~~mp~aQ------------DHKRl~dgD~GpNTGg-mGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfa 277 (788)
T KOG0237|consen 211 VRPLPPAQ------------DHKRLGDGDTGPNTGG-MGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFA 277 (788)
T ss_pred cccCCccc------------chhhhcCCCCCCCCCC-ccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEee
Confidence 22344431 2345666554444444 44457776 56665555443 3333333332222 3333221
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcc
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 431 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S 431 (953)
.++++++| +.+||-|.+-|=-.+-
T Consensus 278 --------------GlMl~k~~-P~vLEfN~RFGDPEtQ 301 (788)
T KOG0237|consen 278 --------------GLMLTKDG-PKVLEFNVRFGDPETQ 301 (788)
T ss_pred --------------eeEEecCC-ccEEEEecccCCchhh
Confidence 24567888 9999999999865553
No 160
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.24 E-value=1.1e-10 Score=122.32 Aligned_cols=211 Identities=16% Similarity=0.149 Sum_probs=137.0
Q ss_pred EEecCCCCCCcc----HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHH
Q 002207 639 FIAVHGGIGEDG----TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 714 (953)
Q Consensus 639 f~~~hG~~GEdg----~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~ 714 (953)
|+++.++.||-- ....|-+.+.||| ++..-.+...+|-..... +.+.|+|.|.++.+++..
T Consensus 75 ~LLva~GDgev~lvSq~reeLSa~f~v~l--p~w~~l~wlceKPllY~r---a~elgl~~P~Ty~v~S~~---------- 139 (415)
T COG3919 75 YLLVACGDGEVLLVSQYREELSAFFEVPL--PDWALLRWLCEKPLLYNR---AEELGLPYPKTYLVNSEI---------- 139 (415)
T ss_pred eEEEecCCceeeehHhhHHHHHHHhcCCC--CcHHHHHHHhhCcHHHHH---HHHhCCCCcceEEecchh----------
Confidence 455566667632 3456777788997 567777777788888887 899999999999998642
Q ss_pred HHHHhhcCCCcEEEecCCCCC--CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 715 HELTSKLQCKTLCVKPARDGC--STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 715 ~~~~~~lg~~PlvVKP~~~gs--S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
+....++ .||+|.||..+|| +.+-.++-..+|-+++..|+-.+...+ .++.++||+||+|
T Consensus 140 d~~~~el-~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eei-----------------gpDnvvvQe~IPG 201 (415)
T COG3919 140 DTLVDEL-TFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEI-----------------GPDNVVVQEFIPG 201 (415)
T ss_pred hhhhhhe-eeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhc-----------------CCCceEEEEecCC
Confidence 2234567 7999999999885 344445544555555445666665543 2688999999998
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
- +++ -++...+-+++..+..+-. .....|...+-.+.+....| +
T Consensus 202 G-----------gE~-----------qfsyaAlw~~g~pvaefta------rr~rqyPvdfgytst~vevv------D-- 245 (415)
T COG3919 202 G-----------GEN-----------QFSYAALWDKGHPVAEFTA------RRLRQYPVDFGYTSTVVEVV------D-- 245 (415)
T ss_pred C-----------Ccc-----------cchHHHHHhCCCchhhhhc------chhhcCCcccccccEEEEec------C--
Confidence 4 111 2333333333332211111 11111221121222332332 1
Q ss_pred HHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.+++.+.|+++.+.++-.|++.+||..|++||...++|||++|+-.
T Consensus 246 -n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~w 291 (415)
T COG3919 246 -NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRW 291 (415)
T ss_pred -cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcce
Confidence 3466778888899999999999999999999999999999999743
No 161
>PRK12458 glutathione synthetase; Provisional
Probab=99.24 E-value=1.1e-09 Score=123.69 Aligned_cols=226 Identities=14% Similarity=0.159 Sum_probs=132.3
Q ss_pred CCcEEEEecCCCCCCcc--HHH-------HHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCcc
Q 002207 634 NQATVFIAVHGGIGEDG--TLQ-------SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 704 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg--~iq-------~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~ 704 (953)
.+|+||+---..+..++ .+. .++|..|++.+ +++.+...|.||..+..+ ++ +++|++.+....
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l---~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSF---PE---EVRPTTHISRNK- 150 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhh---cc---CCCCCEEEeCCH-
Confidence 36899987644443322 122 34467899876 778999999999999765 33 678888765432
Q ss_pred ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccc--HHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 705 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED--LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 705 ~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~e--L~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
+.+.++.+++++.|+||||..+.+|.||.++.+.++ +.. .++. +.. ..
T Consensus 151 -------~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~---ile~-~~~-------------------~~ 200 (338)
T PRK12458 151 -------EYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQ---ILEF-YSG-------------------DG 200 (338)
T ss_pred -------HHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHH---HHHH-Hhh-------------------CC
Confidence 224445566732359999999999999999986664 332 2222 111 35
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeC---ceE-EEecCCccccccccccCCCc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM---PSV-TVKESGDILSLEEKFQGGTG 858 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~---p~~-~i~~~~~~~d~~~Ky~~g~~ 858 (953)
.+|+|+||++.+ + .|+.+-++++. ..... +.+ ++...+ ++......|..
T Consensus 201 ~~ivQeyI~~~~-----------------~-----gDiRv~vv~g~--~v~~~g~~~a~~R~~~~~---d~RsN~~~Gg~ 253 (338)
T PRK12458 201 YVIAQEYLPGAE-----------------E-----GDVRILLLNGE--PLERDGHYAAMRRVPAGG---DVRSNVHAGGS 253 (338)
T ss_pred CEEEEEcccCCC-----------------C-----CCEEEEEECCE--EEeeccceeEEEEecCCC---CeeecccCCCc
Confidence 799999998630 1 17777777653 11000 222 222222 33333333332
Q ss_pred eeEcCCCCCCCCHHHHHHHHHHHHHHHHHc---CCcceEEEEEEEEcCCCcEEEEeeCC-CCC-CCCCchHHHHHHhcCC
Q 002207 859 INLTPPPASIMSTEALDKCKQRIELIANAL---QLEGFSRIDAFVNVDNGEVLIIEVNT-VPG-MTPSTVLIHQALSEQP 933 (953)
Q Consensus 859 ~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL---g~~G~ariDf~v~~~~g~~~viEINt-~PG-lt~~S~l~~~a~~~~~ 933 (953)
..+.. +++ +++++|.++..+| |+. +++||++ . + +|+|||. .|| +.. ..+..|
T Consensus 254 --~~~~~---l~~----~~~~ia~~~~~~l~~~GL~-~~gVDli-~---~--~l~EIN~~sp~g~~~-------~~~~~g 310 (338)
T PRK12458 254 --VVKHT---LTK----EELELCEAIRPKLVRDGLF-FVGLDIV-G---D--KLVEVNVFSPGGLTR-------INKLNK 310 (338)
T ss_pred --ccCcC---CCH----HHHHHHHHHHHHHhhcCCe-EEeEEEE-C---C--EEEEEeCCCcchHHH-------HHHHhC
Confidence 22332 343 4566667776666 554 8999985 2 2 6899997 573 322 122234
Q ss_pred CCCHHHHHHHHHHH
Q 002207 934 PMYPHQFFRKVLDL 947 (953)
Q Consensus 934 ~~yp~~l~~~li~~ 947 (953)
..++..+++.+.+.
T Consensus 311 ~d~a~~i~~~i~~~ 324 (338)
T PRK12458 311 IDFVEDIIEALERK 324 (338)
T ss_pred CCHHHHHHHHHHHH
Confidence 45666666655443
No 162
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.23 E-value=5.8e-10 Score=126.15 Aligned_cols=212 Identities=17% Similarity=0.217 Sum_probs=151.9
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
-|.+.|...|||+.||+..+.++..+|.++|.+ +.++||||+.|..++..+ ....+.......++|||.
T Consensus 83 Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~f---m~r~~IPTA~y~~ft~~e--------~a~sfi~~~~~~~~ViKA 151 (788)
T KOG0237|consen 83 GLADVLRSAGIPCFGPSKQAAQLEASKNFSKDF---MHRHNIPTAKYKTFTDPE--------EAKSFIQSATDKALVIKA 151 (788)
T ss_pred hhhhhhhccCcceeCchHHHHHhhhhHHHHHHH---HHhcCCCcceeeeeCCHH--------HHHHHHHhCCCcceEEee
Confidence 366778899999999999999999999999999 899999999999988754 234455566335799999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
.-...+.||.+..+.+| +.+|++..+.. ..+. .....++||||++|+
T Consensus 152 dGLAAGKGViv~~~~~E---A~eAv~sIl~~---~~fg----------~AG~tvViEE~LEGe----------------- 198 (788)
T KOG0237|consen 152 DGLAAGKGVIVAKSKEE---AFEAVDSILVK---KVFG----------SAGKTVVIEELLEGE----------------- 198 (788)
T ss_pred cccccCCceEeeccHHH---HHHHHHHHHhh---hhhc----------cccceEehhhhcCcc-----------------
Confidence 99999999999876555 34566666532 0111 125789999999998
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHH-HHHHHHc-
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRI-ELIANAL- 888 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a-~~~~~aL- 888 (953)
|+++-.+.++.....++|.-. ....++-+---+.|.+..++|+|. .++++++.+++.+ ++..+-|
T Consensus 199 --------EvS~laftDG~s~~~mp~aQD---HKRl~dgD~GpNTGgmGaY~paPv--~s~~ll~~v~~~I~~~Tv~Gm~ 265 (788)
T KOG0237|consen 199 --------EVSFLAFTDGYSVRPLPPAQD---HKRLGDGDTGPNTGGMGAYAPAPV--ASPKLLDTVQSTIIEPTVDGMA 265 (788)
T ss_pred --------eEEEEEEecCcccccCCcccc---hhhhcCCCCCCCCCCccccccCCc--cCHHHHHHHHHHHhhHhhhHHH
Confidence 999998888655555555432 234555454455566677899886 6788777776543 3444433
Q ss_pred --C--CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 889 --Q--LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 889 --g--~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
| +.|+.---+++.. +| +.++|-|-+=|=-..
T Consensus 266 ~eg~~y~GVLfaGlMl~k-~~-P~vLEfN~RFGDPEt 300 (788)
T KOG0237|consen 266 EEGIPYVGVLFAGLMLTK-DG-PKVLEFNVRFGDPET 300 (788)
T ss_pred hcCCceeeEEeeeeEEec-CC-ccEEEEecccCCchh
Confidence 2 3355556677774 44 999999987665443
No 163
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.21 E-value=7.9e-11 Score=123.50 Aligned_cols=207 Identities=17% Similarity=0.133 Sum_probs=133.3
Q ss_pred HHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCC
Q 002207 181 IQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260 (953)
Q Consensus 181 iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~g 260 (953)
..++-+.+.||+. +-.-..--.+|-.....+.+.|+|.|.++.+++..+. . .+++.||+|.||..+|
T Consensus 92 reeLSa~f~v~lp--~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~S~~d~------~-----~~el~FPvILKP~mgg 158 (415)
T COG3919 92 REELSAFFEVPLP--DWALLRWLCEKPLLYNRAEELGLPYPKTYLVNSEIDT------L-----VDELTFPVILKPGMGG 158 (415)
T ss_pred HHHHHHHhcCCCC--cHHHHHHHhhCcHHHHHHHHhCCCCcceEEecchhhh------h-----hhheeeeEEecCCCCC
Confidence 3467777788874 5666777778999999999999999999999854321 1 1247899999999999
Q ss_pred C--ceeEE---EeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeE--EEEEEEEeCCCCccccEEecceEEEEeccCcc
Q 002207 261 S--SIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE--FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSV 333 (953)
Q Consensus 261 s--S~GV~---~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E--~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~ 333 (953)
| +.+-. .+.+.+|+..+..+...+.+.+.++||+||+||-| ++...+= ++++|++-..+..
T Consensus 159 ~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw----~~g~pvaeftarr-------- 226 (415)
T COG3919 159 SVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALW----DKGHPVAEFTARR-------- 226 (415)
T ss_pred cceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHH----hCCCchhhhhcch--------
Confidence 7 22222 23455665444434334456789999999999776 2322221 2345553222111
Q ss_pred ccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccC
Q 002207 334 DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 413 (953)
Q Consensus 334 ~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~d 413 (953)
...|-..+--+. +....| + .+++.+.|+++...++..|++.|||.+++ .|
T Consensus 227 -------~rqyPvdfgyts-t~vevv----D--n~Q~i~aar~~L~si~htGlvevefK~D~----------------RD 276 (415)
T COG3919 227 -------LRQYPVDFGYTS-TVVEVV----D--NQQVIQAARDFLESIEHTGLVEVEFKYDP----------------RD 276 (415)
T ss_pred -------hhcCCccccccc-EEEEec----C--cHHHHHHHHHHHHhhcccceEEEEEEecC----------------CC
Confidence 111221111111 222222 2 34567788899999999999999999853 58
Q ss_pred CcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHH
Q 002207 414 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 447 (953)
Q Consensus 414 G~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~l 447 (953)
|.+.++|||++|+ ..+. .+.++|++...+
T Consensus 277 Gs~KlldvNpRpw--~wfg---l~taaG~nLg~~ 305 (415)
T COG3919 277 GSYKLLDVNPRPW--RWFG---LVTAAGYNLGRY 305 (415)
T ss_pred CceeEEeecCCCc--ceee---EEecccccccce
Confidence 9999999999999 2222 345778875433
No 164
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.19 E-value=1.2e-09 Score=122.16 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=123.5
Q ss_pred CCcEEEEecCCCCCCcc----HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 634 NQATVFIAVHGGIGEDG----TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg----~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
.+|+||+--...+.+.- .+-..+|..|++++ +++.+.+.|.||.++.++ + .++|++....+.
T Consensus 78 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~---~----~~vP~T~v~~~~------ 143 (312)
T TIGR01380 78 ELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQF---P----KVIPPTLVTRDK------ 143 (312)
T ss_pred cCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhC---c----CCCCCEEEeCCH------
Confidence 36999988755544322 46677888999876 567889999999998765 3 279998765432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc-ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA-EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~-~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
+.+.++.++.+ |+|+||..++++.||.++... .++..+ .+..... ....+++|+
T Consensus 144 --~~~~~~~~~~g--~vVvKPl~G~~G~gv~~v~~~~~~~~~~----~~~~~~~-----------------~~~~~~vQ~ 198 (312)
T TIGR01380 144 --AEIRAFLAEHG--DIVLKPLDGMGGEGIFRLDPGDPNFNSI----LETMTQR-----------------GREPVMAQR 198 (312)
T ss_pred --HHHHHHHHHcC--CEEEEECCCCCCceEEEEcCCCccHHHH----HHHHHhc-----------------cCCcEEEEe
Confidence 22445566773 999999999999999999753 234322 1222110 035799999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCc-eEEEecCCccccccccccCCCceeEcCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP-SVTVKESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p-~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
||+.. ++ .|+.|-|+++. +.+ .+.-.+..+ +|......|.. ..|.+
T Consensus 199 yI~~~------------------~~----~D~Rv~vv~g~-----vv~~ai~R~~~~g--d~r~N~~~Gg~--~~~~~-- 245 (312)
T TIGR01380 199 YLPEI------------------KE----GDKRILLIDGE-----PIGAAVARIPAGG--EFRGNLAVGGR--GEATE-- 245 (312)
T ss_pred ccccc------------------cC----CCEEEEEECCe-----EEEEEEEecCCCC--CccccccCCce--eeccC--
Confidence 99742 00 28888888753 222 232222221 34444444432 33433
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 915 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~ 915 (953)
++++. .++.+.+...++++|+. |++||++ | .||+|||..
T Consensus 246 -l~~e~-~~ia~~~~~~~~~~gl~-~agVDii-----g-~~v~EvN~~ 284 (312)
T TIGR01380 246 -LSERD-REICADVAPELKRRGLL-FVGIDVI-----G-GYLTEVNVT 284 (312)
T ss_pred -CCHHH-HHHHHHHHHHHHhcCCc-EEEEEEe-----C-CEEEEEecC
Confidence 34432 23333333334666775 9999986 2 379999964
No 165
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.19 E-value=1.7e-10 Score=123.19 Aligned_cols=196 Identities=22% Similarity=0.222 Sum_probs=130.2
Q ss_pred hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChH-HHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 631 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM-ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 631 ~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~-as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+.+|+.++-+.|..-.+-+.. ++.++.|+++. ...-..+|..+.+. +..+|.|-|+......
T Consensus 80 ~~~dvD~~ii~~sg~e~l~~~g~-----~~~~v~~n~P~~~v~~~snk~~~~r~---l~~lgmp~p~~~~~e~------- 144 (389)
T COG2232 80 LAEDVDAPIIPFSGFEALRTSGE-----LGCEVAGNEPEVKVVEASNKLKFYRK---LEVLGMPEPSEKKIEP------- 144 (389)
T ss_pred hhhhcceeeeeccccccccccCc-----cccccccCCcHHHHHHHHHHHhhhhh---hhhcCCCCChhhhhhh-------
Confidence 45667887777777655543322 45778888888 67777899999887 8999999998654321
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+ ..+.+++|.||..|+|+. +.++.-.++. +...+|+|+|
T Consensus 145 -------~--~~gekt~IlKPv~GaGG~-~el~~~~Ee~-------------------------------~~~~~i~Qef 183 (389)
T COG2232 145 -------L--EEGEKTLILKPVSGAGGL-VELVKFDEED-------------------------------PPPGFIFQEF 183 (389)
T ss_pred -------h--hhcceeeEEeeccCCCce-eeeccccccc-------------------------------CCcceehhhh
Confidence 1 112479999999998874 2222110110 0367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEec-CCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-SGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~-~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. -+++++++++.....+.-...+.. ..+.|. .-.|. .+++|.+.
T Consensus 184 i~G~-------------------------p~Svs~is~g~~a~~la~N~QiI~~~~~~~~-~f~Y~----GNlTP~~~-- 231 (389)
T COG2232 184 IEGR-------------------------PVSVSFISNGSDALTLAVNDQIIDGLRGEYS-QFVYK----GNLTPFPY-- 231 (389)
T ss_pred cCCc-------------------------eeEEEEEecCcceEEEEEeeeeecccccccc-cceec----cCcCCCcc--
Confidence 9997 889999988655332222222221 111111 00122 34678762
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.+ .+++.++|..+...||+.|...|||.+++ ..+||+||||++--|
T Consensus 232 --~~-~ee~e~la~elV~~lgL~GsnGVDfvl~d--~gpyViEVNPR~qGt 277 (389)
T COG2232 232 --EE-VEEAERLAEELVEELGLVGSNGVDFVLND--KGPYVIEVNPRIQGT 277 (389)
T ss_pred --hh-hHHHHHHHHHHHHHhccccccccceEeec--CCcEEEEecCcccch
Confidence 33 37889999999999999999999999983 459999999766433
No 166
>PRK05246 glutathione synthetase; Provisional
Probab=99.17 E-value=5.5e-09 Score=117.26 Aligned_cols=197 Identities=14% Similarity=0.173 Sum_probs=121.7
Q ss_pred CcEEEEecCCCCCCc----cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 635 QATVFIAVHGGIGED----GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 635 ~dvvf~~~hG~~GEd----g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
+|+||+-.+-.+.+. ..+-..++..|+++.. ++.+...|.||..+.++ +. ++|++....+.
T Consensus 80 ~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N-~p~~l~~~~dK~~~~~l---~~----~vP~T~~~~~~------- 144 (316)
T PRK05246 80 FDVILMRKDPPFDMEYIYATYLLERAERPGTLVVN-KPQSLRDANEKLFTLWF---PE----LMPPTLVTRDK------- 144 (316)
T ss_pred CCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEEC-CHHHHHhCccHHHHHhh---hc----cCCCEEEeCCH-------
Confidence 799997654444431 2355677878998875 46788999999999776 33 78998765532
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCC-cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC-AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~-~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++.++.+ |+|+||..+.++.||.++.. ..++..+.+. +... ....+|+|+|
T Consensus 145 -~~~~~~~~~~~--~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~----l~~~-----------------~~~~~lvQ~~ 200 (316)
T PRK05246 145 -AEIRAFRAEHG--DIILKPLDGMGGAGIFRVKADDPNLGSILET----LTEH-----------------GREPVMAQRY 200 (316)
T ss_pred -HHHHHHHHHCC--CEEEEECCCCCccceEEEeCCCccHHHHHHH----HHHc-----------------cCCeEEEEec
Confidence 22445566673 99999999999999999954 3444432222 2210 0367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCc-eE-EEecCCccccccccccCCCceeEcCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP-SV-TVKESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p-~~-~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
|+... . .++.|-++++. +.+ .+ ++...+ +|......|.. ..|.+
T Consensus 201 I~~~~-----------------~-----~D~Rv~vv~g~-----vv~~a~~R~~~~~---~~rtN~~~Gg~--~~~~~-- 246 (316)
T PRK05246 201 LPEIK-----------------E-----GDKRILLVDGE-----PVGYALARIPAGG---ETRGNLAAGGR--GEATP-- 246 (316)
T ss_pred cccCC-----------------C-----CCEEEEEECCE-----EhhheeEecCCCC---CcccCccCCce--EeccC--
Confidence 97520 1 27788887532 233 22 332222 34444444432 33444
Q ss_pred CCCHHHHHHHHHHHHHHH---HHcCCcceEEEEEEEEcCCCcEEEEeeCCC-C
Q 002207 868 IMSTEALDKCKQRIELIA---NALQLEGFSRIDAFVNVDNGEVLIIEVNTV-P 916 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~---~aLg~~G~ariDf~v~~~~g~~~viEINt~-P 916 (953)
++++ .+++|.+++ +.+|+. +++||+. |. ||+|||.. |
T Consensus 247 -l~~~----~~~ia~~~~~~l~~~gl~-~~GVDli-----~~-~l~EvN~~~p 287 (316)
T PRK05246 247 -LTER----DREICAAIGPELKERGLI-FVGIDVI-----GD-YLTEINVTSP 287 (316)
T ss_pred -CCHH----HHHHHHHHHHHHHHhCCC-EEEEEEe-----CC-EEEEEeCCCc
Confidence 3443 344444444 566664 8999985 22 79999964 5
No 167
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=99.10 E-value=1.1e-09 Score=126.23 Aligned_cols=186 Identities=17% Similarity=0.200 Sum_probs=123.4
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCC-CcEEEeeC----CCCCceeEEEeCCHHHHHHHHH
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS-GKVVVKPT----RAGSSIGVTVAYGVIDSLKKAK 279 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~----~~gsS~GV~~v~~~~el~~~a~ 279 (953)
+.+.+|++|+++|||||++..+.+.++ +.+.++ .++ ||+||||. ..|++-||.++++.+++.+++.
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~~~~~~e----a~~~~~-----~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~ 74 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYVATSVEE----AEEIAA-----KLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAE 74 (386)
T ss_pred cHHHHHHHHHHcCCCCCCceeeCCHHH----HHHHHH-----HhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHH
Confidence 567899999999999999998865432 223332 256 89999998 3444569999999999888777
Q ss_pred HhHhcC-----CC------CcEEEeccCCCCeEEEEEEEEeCCCCccccEEecc--e--EEEEeccC------ccccccC
Q 002207 280 GIILEG-----ID------DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP--T--EVELQFQG------SVDVREK 338 (953)
Q Consensus 280 ~~~~~~-----~~------~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~--~--ei~~~~~~------~~~~~~~ 338 (953)
+++... ++ ..+|||+|+.+++|++++++.+... ..|+++.- | .++...+. ...+.+.
T Consensus 75 ~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~--~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~ 152 (386)
T TIGR01016 75 KLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSA--RCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPL 152 (386)
T ss_pred HHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCC--CceEEEEECCCCccHHHHhhhCccceEEEEcCCC
Confidence 765311 11 3699999999559999999986421 23433211 0 00000000 0012224
Q ss_pred CcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEE
Q 002207 339 DAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 418 (953)
Q Consensus 339 ~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~ 418 (953)
..+++|+++|... +..++....+.+.+++.++++.+.-.++.-+|+ +| +.++++|+++.
T Consensus 153 ~~~~~~~a~~~~~-------~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEI--NP------------l~v~~~g~~~a 211 (386)
T TIGR01016 153 TGLLPYQAREIAK-------KLGLEGELVKQVADIIKKLYQIFLEYDASLVEI--NP------------LVITKDGNLIA 211 (386)
T ss_pred cCCCHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEe--ee------------eEEcCCCCEEE
Confidence 5688888887532 445788889999999999999988666777773 32 44566766666
Q ss_pred Eeec
Q 002207 419 TDIN 422 (953)
Q Consensus 419 lEIN 422 (953)
++..
T Consensus 212 ~Dak 215 (386)
T TIGR01016 212 LDAK 215 (386)
T ss_pred Eeee
Confidence 6654
No 168
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.84 E-value=5.4e-08 Score=112.28 Aligned_cols=182 Identities=13% Similarity=0.160 Sum_probs=114.9
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC-CcEEEecC----CCCCCcceEEeCCcccHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC-KTLCVKPA----RDGCSTGVARLCCAEDLTV 750 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~-~PlvVKP~----~~gsS~GV~~v~~~~eL~~ 750 (953)
+.+.+|++ |+++|||||++..+.+.+ .+.++.+++ + ||+||||. ..|++-||.++.+.+++.+
T Consensus 4 ~E~~aK~l---l~~~GIpvp~~~~~~~~~--------ea~~~~~~i-g~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~ 71 (386)
T TIGR01016 4 HEYQAKQI---FAKYGIPVPRGYVATSVE--------EAEEIAAKL-GAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARA 71 (386)
T ss_pred cHHHHHHH---HHHcCCCCCCceeeCCHH--------HHHHHHHHh-CCCcEEEEecccCCCCccCceEEEeCCHHHHHH
Confidence 46778888 999999999998886532 234455678 6 99999998 3445569999988888765
Q ss_pred HHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-
Q 002207 751 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG- 829 (953)
Q Consensus 751 ~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~- 829 (953)
++++.+.. .+.... ...+......+|||+|+++. +|+.++++.+..
T Consensus 72 ---a~~~l~~~----~~~~~~--~~~~g~~~~~vlVEe~v~~g------------------------~E~~v~i~~d~~~ 118 (386)
T TIGR01016 72 ---AAEKLLGK----ELVTNQ--TDPLGQPVNKILIEEATDID------------------------KEYYLSIVIDRSA 118 (386)
T ss_pred ---HHHHHhcc----ceeecc--cCCCCCEeeEEEEEECccCC------------------------ceEEEEEEEcCCC
Confidence 44444321 000000 00000112579999999932 399999998742
Q ss_pred -CceeeCc-------------------eEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 002207 830 -SMHSLMP-------------------SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 889 (953)
Q Consensus 830 -~~~~~~p-------------------~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg 889 (953)
.+..+.+ .+.+.+..++++|+.++..+ +.. ++....+.+.+.+.++++.+.
T Consensus 119 ~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~~~~~------~l~---~~~~~~~~l~~~l~~l~~~~~ 189 (386)
T TIGR01016 119 RCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREIAK------KLG---LEGELVKQVADIIKKLYQIFL 189 (386)
T ss_pred CceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHHHHHH------HcC---CCHHHHHHHHHHHHHHHHHHH
Confidence 1221212 33344456688888877533 222 356778899999999998887
Q ss_pred CcceEEEEE---EEEcCCCcEEEEee
Q 002207 890 LEGFSRIDA---FVNVDNGEVLIIEV 912 (953)
Q Consensus 890 ~~G~ariDf---~v~~~~g~~~viEI 912 (953)
-.++.-+|+ +++. +|+++.+..
T Consensus 190 ~~~~~~lEINPl~v~~-~g~~~a~Da 214 (386)
T TIGR01016 190 EYDASLVEINPLVITK-DGNLIALDA 214 (386)
T ss_pred hCCceEEEeeeeEEcC-CCCEEEEee
Confidence 655666663 3443 566665553
No 169
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.68 E-value=9.6e-07 Score=97.44 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=116.3
Q ss_pred CChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCC---chhhHHHHHHhhcCCCcEEEecCCCCCCcceEEe
Q 002207 666 PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKT---PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742 (953)
Q Consensus 666 ~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~---~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v 742 (953)
.+.....+..||..++++ +.++|||||+.......++... ...+.+.++.......++|+||+.+.++.||.++
T Consensus 16 N~~~~~~l~~DK~~~~~l---~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i 92 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQL---FRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVI 92 (285)
T ss_pred CchhhccccCCHHHHHHH---HHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEE
Confidence 344566788999999999 8999999999433222222111 1223344454443247999999999999999998
Q ss_pred CCccc--HHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEE
Q 002207 743 CCAED--LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEI 820 (953)
Q Consensus 743 ~~~~e--L~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Ei 820 (953)
...+. +..-...+....... ....+|||++|.-.+..- .+.-.+- ..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~liqe~i~qh~~~~----------~~~~~sv---nTi 142 (285)
T PF14397_consen 93 DRRDGSEINRDISALYAGLESL-----------------GGKDYLIQERIEQHPELA----------ALSPSSV---NTI 142 (285)
T ss_pred EeecCcccccchhHHHHHHHhc-----------------CCccEEEEecccCCHHHH----------hhCCCCC---CcE
Confidence 76652 111001222221110 012799999997543211 0000010 133
Q ss_pred EEEEEcCCCCceeeCceEEEe-------------------cCCcccccccccc-CCCceeEcCCCC---CCCCHHHHHHH
Q 002207 821 TVGVIGKCGSMHSLMPSVTVK-------------------ESGDILSLEEKFQ-GGTGINLTPPPA---SIMSTEALDKC 877 (953)
Q Consensus 821 tv~vl~~~~~~~~~~p~~~i~-------------------~~~~~~d~~~Ky~-~g~~~~~~P~~~---~~l~~~~~~~i 877 (953)
.|..+-+.+....+...+++. ...++-.+. -|. .+......|-.. ....-.--+++
T Consensus 143 RvvT~~~~~~~~~~~a~lRlg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~-~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~ 221 (285)
T PF14397_consen 143 RVVTFLDDGEVEVLMAMLRLGRGGSGVDNFHQGGIGVGIDLATGLGRFA-GYDQDGERYEHHPDTGAPFSGFQIPNWDEI 221 (285)
T ss_pred EEEEEEeCCeeEEEEEEEEeCCCCCcccccCCCCEEEEEecCCCccccc-cccCCCCEeeeCCCCCCccCCccCCCHHHH
Confidence 333332222222222222221 111111110 010 011111122110 00011235788
Q ss_pred HHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC--CCCC
Q 002207 878 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV--PGMT 919 (953)
Q Consensus 878 ~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~--PGlt 919 (953)
.+.+.++++.+---++...|+.+++ +| +++||.|+. ||+.
T Consensus 222 ~~l~~~~~~~~p~~~~iGWDvait~-~G-p~llE~N~~~~pgl~ 263 (285)
T PF14397_consen 222 LELAKEAHRKFPGLGYIGWDVAITE-DG-PVLLEGNARWDPGLM 263 (285)
T ss_pred HHHHHHHHHHCCCCCeEEEEEEEcC-CC-cEEEEeeCCCCCCcH
Confidence 9999999988876679999999995 67 999999999 8875
No 170
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.66 E-value=2.4e-06 Score=94.26 Aligned_cols=225 Identities=14% Similarity=0.075 Sum_probs=121.6
Q ss_pred CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCc-------cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEE
Q 002207 195 TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE-------VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV 267 (953)
Q Consensus 195 s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~ 267 (953)
++.....+..||..+++++.+.|||+|+.+...... ...+.+.+++... ...++|+||+.|.+|.||.+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~viKP~~G~~G~Gi~~ 91 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKH----APDRFVIKPANGSGGKGILV 91 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhc----cCCcEEEEeCCCCCccCEEE
Confidence 566788899999999999999999999944322211 1223444444321 23689999999999999998
Q ss_pred eCCHHH-----HHHHHHHhHhcCCCCcEEEeccCCC-----------CeEEEEEEEEeCCCCccccEEecceEEEEecc-
Q 002207 268 AYGVID-----SLKKAKGIILEGIDDRVVVELFLEG-----------GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ- 330 (953)
Q Consensus 268 v~~~~e-----l~~~a~~~~~~~~~~~vlVEefI~G-----------g~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~- 330 (953)
+...+. -.......+.......+|||++|.- -.-+++.++.++ +.+.++.. -..+...
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~----~~~~~~~a-~lRlg~~~ 166 (285)
T PF14397_consen 92 IDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD----GEVEVLMA-MLRLGRGG 166 (285)
T ss_pred EEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC----CeeEEEEE-EEEeCCCC
Confidence 764431 0111111111111128999999953 122444444321 11111111 0111100
Q ss_pred ----Ccc------ccccCCcccccccCccCCCceEEEcCC------CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeec
Q 002207 331 ----GSV------DVREKDAIFNYRRKYLPTQQVAYHTPP------RFPIVVINSIREGASLLFQRLGLCDFARIDGWFL 394 (953)
Q Consensus 331 ----~~~------~~~~~~~~~dy~~Ky~~~~~~~~~~Pa------~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~ 394 (953)
+.. .+....++..+. .|..........|. .+.-.-.+++.+.+.++++.+---++...|+.+
T Consensus 167 ~~~DN~~~Ggi~~~ID~~tGl~~~~-~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvai- 244 (285)
T PF14397_consen 167 SGVDNFHQGGIGVGIDLATGLGRFA-GYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAI- 244 (285)
T ss_pred CcccccCCCCEEEEEecCCCccccc-cccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEE-
Confidence 000 000011111111 11111101111221 111223688899999999998767899999876
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCC--CCCCCcchHHHHHHHhCCCHHHHHHHHHHH
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLI--SGMEQTSFLFQQASKVGFSHSNILRTIIGH 454 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~--PG~t~~S~~p~~a~~~G~s~~~ll~~li~~ 454 (953)
|++| +.+||.|.. ||+.. + .+.|..+...+++++..
T Consensus 245 ----------------t~~G-p~llE~N~~~~pgl~~------~-~~~g~gl~~~~~~v~~~ 282 (285)
T PF14397_consen 245 ----------------TEDG-PVLLEGNARWDPGLMI------Q-IANGPGLFPRLQEVEGY 282 (285)
T ss_pred ----------------cCCC-cEEEEeeCCCCCCcHh------h-hccCcchHHHHHHHHHH
Confidence 7889 999999999 88642 1 23444444455555543
No 171
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.66 E-value=2.2e-06 Score=91.93 Aligned_cols=309 Identities=17% Similarity=0.170 Sum_probs=186.5
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCC-CCccccccccccccCcc--
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP-ADFDFKLESLAQGFGSL-- 153 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 153 (953)
.++||.++ -.||.+|++..++.|+..+++- ..|+.-. +...+ .+ ++.+ ...|..+
T Consensus 18 ~i~Iat~g----------SHSaL~Il~GAK~EGF~Ti~v~--~~gr~~~------Y~~f~~a~-e~i~---v~~f~dil~ 75 (361)
T COG1759 18 DITIATIG----------SHSALQILDGAKEEGFRTIAVC--QRGREKP------YEKFPVAD-EVII---VDKFSDILN 75 (361)
T ss_pred ceEEEEee----------cchHHHHhhhHHhcCCcEEEEE--ecCccch------HHhhchhh-eEEE---echhHHHhh
Confidence 36888887 2479999999999999987653 3333211 10000 00 0000 0001000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.+..+.+. .-+ ++.+-||.+-.--.+.+..+.+-+|+.|+...--. -.|...-..+|+++|++.|.-+ .+.+
T Consensus 76 ~~iqe~L~-~~n-~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrw-E~~~~~~~~lLekAgi~~P~~~--~~Pe--- 147 (361)
T COG1759 76 EEIQEELR-ELN-AIFIPHGSFVAYVGYDGIENEFEVPMFGNRELLRW-EEDRKLEYKLLEKAGLRIPKKY--KSPE--- 147 (361)
T ss_pred HHHHHHHH-HcC-eEEecCCceEEEecchhhhhcccCcccccHhHhhh-hcchhhHHHHHHHcCCCCCccc--CChH---
Confidence 01122222 222 33445888877666778889999999998655433 3388888889999999999753 2221
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCC-----CCcEEEeccCCCCeEEEEEEEE
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI-----DDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~-----~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++..|||||+...-++.|-+++.+.+|+.+++.+++..+. -..+.|||||-| .-+....+-
T Consensus 148 -------------eIdr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFy 213 (361)
T COG1759 148 -------------EIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFY 213 (361)
T ss_pred -------------HcCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeee
Confidence 2456999999999889999999999999999988765321 136889999998 665555442
Q ss_pred eCCCCccccEEecceEEEEec-cCccccccCCcccccccCcc------CCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh
Q 002207 309 VGSGFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYL------PTQQVAYHTPPRFPIVVINSIREGASLLFQRL 381 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~-~~~~~~~~~~~~~dy~~Ky~------~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL 381 (953)
. |+. .++++-. +.=.+.+ -++++..-++++ +..-..-+.|+.+-+.+...+-+++.+..++-
T Consensus 214 S-------~i~---~~lEl~g~D~R~Esn-~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~vlRESLL~~vfe~ger~V~a~ 282 (361)
T COG1759 214 S-------PIK---DRLELLGIDRRYESN-LDGLVRLPAKDQLELNLEPTYVVVGNIPVVLRESLLPKVFEMGERFVEAT 282 (361)
T ss_pred c-------ccc---CceeEeeeeheeecc-chhhccCCHHHHhhcCCCceEEEECCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 1 000 1111110 0000000 112222222221 11112223577777777777778877777653
Q ss_pred ------CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCC------CCCCcchHHHHHHHhCCCHHHHHH
Q 002207 382 ------GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS------GMEQTSFLFQQASKVGFSHSNILR 449 (953)
Q Consensus 382 ------g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~P------G~t~~S~~p~~a~~~G~s~~~ll~ 449 (953)
|+.|....+.++ |+|=++++.||-++- +|. .|-|..+....++|..+=|.
T Consensus 283 kel~~PG~iGpFcLq~~~-----------------t~dl~~vVfevS~Ri~gGTNv~~~-GspYs~l~~~~pms~GrRIA 344 (361)
T COG1759 283 KELVPPGIIGPFCLQTIV-----------------TDDLEFVVFEVSARIVGGTNVYMG-GSPYSNLYWGEPMSTGRRIA 344 (361)
T ss_pred HHhcCCCcccceeeeeee-----------------cCCccEEEEEEeccccCCcccccC-CCcchhhhcCCCcchhhHHH
Confidence 677888889876 667789999998633 333 45555555556777777777
Q ss_pred HHHHHHhhh
Q 002207 450 TIIGHACSR 458 (953)
Q Consensus 450 ~li~~a~~r 458 (953)
+=|..|.++
T Consensus 345 ~EIk~A~e~ 353 (361)
T COG1759 345 REIKEAIEL 353 (361)
T ss_pred HHHHHHHHh
Confidence 777777665
No 172
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.57 E-value=1.3e-06 Score=96.28 Aligned_cols=223 Identities=17% Similarity=0.176 Sum_probs=125.6
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHc-CCCEeCCChHHHHHhcChHHHHHHHHHHH----HCCCCccCeEEEeCccccCC
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAE-GVPYTGPGVMASKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKT 708 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~-gIPy~G~~~~as~l~~DK~~tk~~~~~l~----~~GIptp~~~~v~~~~~~~~ 708 (953)
.+|+++-=+.+... -..+|.+.+.. +++.+- ++.+....+|+..|.+++..+. ...|.+|++..+.+..
T Consensus 52 pfDvIlHKltd~~~-~~~l~~y~~~hP~v~viD-p~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~---- 125 (307)
T PF05770_consen 52 PFDVILHKLTDEDW-VQQLEEYIKKHPEVVVID-PPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA---- 125 (307)
T ss_dssp -SCEEEE--CHCHH-HHHHHHHHHH-TTSEEET--HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH----
T ss_pred CcEEEEEeCCCHHH-HHHHHHHHHHCCCeEEEc-CHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH----
Confidence 35887766655111 12566666653 677664 4578899999999988855443 2377899999988532
Q ss_pred chhhHHHHH-HhhcCCCcEEEecCCCC---CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeE
Q 002207 709 PIVDIWHEL-TSKLQCKTLCVKPARDG---CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784 (953)
Q Consensus 709 ~~~~~~~~~-~~~lg~~PlvVKP~~~g---sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~v 784 (953)
.+..+.+ .+.| .||+|+||.... .|..+.++.+.+.|..+ ..++
T Consensus 126 --~~~~~~l~~agL-~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-----------------------------~~P~ 173 (307)
T PF05770_consen 126 --ESLPELLKEAGL-KFPLICKPLVACGSADSHKMAIVFNEEGLKDL-----------------------------KPPC 173 (307)
T ss_dssp --CCHHHHHHCTTS--SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-------------------------------SSE
T ss_pred --HHHHHHHHHCCC-cccEEeeehhhcCCccceEEEEEECHHHHhhc-----------------------------CCCE
Confidence 1122222 3578 799999997643 46788899999998641 3568
Q ss_pred EEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEec------CCccccccc--cccCC
Q 002207 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE------SGDILSLEE--KFQGG 856 (953)
Q Consensus 785 lVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~------~~~~~d~~~--Ky~~g 856 (953)
++||||.-. | +=+-|-|+|+.-.. ..-+++.-.. ...+|++.. +....
T Consensus 174 VlQeFVNHg-------------------g----vLfKVyVvGd~v~~-v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~ 229 (307)
T PF05770_consen 174 VLQEFVNHG-------------------G----VLFKVYVVGDKVFV-VKRPSLPNVSSGKLDREEIFFDFHQVSKLESS 229 (307)
T ss_dssp EEEE----T-------------------T----EEEEEEEETTEEEE-EEEE------SSS-TCGGCCCEGGGTCSTTTS
T ss_pred EEEEeecCC-------------------C----EEEEEEEecCEEEE-EECCCCCCCCcccccccccceeccccCCcccc
Confidence 999999743 1 46777788764111 1111211111 123455432 11111
Q ss_pred Cce-eEc--CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCC-CcEEEEeeCCCCCCCCCc
Q 002207 857 TGI-NLT--PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-GEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 857 ~~~-~~~--P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~-g~~~viEINt~PGlt~~S 922 (953)
... ..- +.... +++ .+.++++|..+-++||+. +.++|++++..+ |+.||++||-.||....-
T Consensus 230 ~~~~~~d~~~~~~~-~p~--~~~v~~la~~LR~~lgL~-LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp 295 (307)
T PF05770_consen 230 SDLSDLDKDPSQVE-MPP--DELVEKLAKELRRALGLT-LFGFDVIRENGTGGRYYVIDINYFPGYKKVP 295 (307)
T ss_dssp SGGGSBSS-TTTTT-S----HHHHHHHHHHHHHHHT-S-EEEEEEEEGCCT-SSEEEEEEEES--TTTSC
T ss_pred CchhhcccCccccc-CCC--HHHHHHHHHHHHHHhCcc-eeeeEEEEEcCCCCcEEEEEeccCCCccCCC
Confidence 100 011 11111 111 346788999999999998 888999998767 789999999999998763
No 173
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.57 E-value=2e-06 Score=99.43 Aligned_cols=99 Identities=20% Similarity=0.152 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCC-CCcEEEeeCC--CCCce--eEEEeCCHHHHHHHH
Q 002207 204 FDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPN-SGKVVVKPTR--AGSSI--GVTVAYGVIDSLKKA 278 (953)
Q Consensus 204 ~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~PvvVKP~~--~gsS~--GV~~v~~~~el~~~a 278 (953)
.+++.+|++|+++|||+|++.++.+.++ +.+... .+ +||+||||.. +|.|. ||.++.+.+++.+.+
T Consensus 3 l~e~~ak~lL~~~gIpvp~~~~~~~~~e----a~~~a~-----~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~ 73 (388)
T PRK00696 3 LHEYQAKELFAKYGVPVPRGIVATTPEE----AVEAAE-----ELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFA 73 (388)
T ss_pred CCHHHHHHHHHHcCCCCCCCeeeCCHHH----HHHHHH-----HcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHH
Confidence 4688999999999999999998876543 222222 25 7899999974 33333 999999999998888
Q ss_pred HHhHhcCC--------C---CcEEEeccCCCCeEEEEEEEEeCC
Q 002207 279 KGIILEGI--------D---DRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 279 ~~~~~~~~--------~---~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
.+++.... + ..++||+++++++|+.+++..|..
T Consensus 74 ~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~ 117 (388)
T PRK00696 74 KQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRA 117 (388)
T ss_pred HHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCC
Confidence 77764311 1 259999999966999999998653
No 174
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.54 E-value=2.9e-06 Score=93.44 Aligned_cols=222 Identities=17% Similarity=0.232 Sum_probs=124.9
Q ss_pred CcCEEEEcCCCCCCCc--hHHHHHHHcC-CccEECCCHHHHHHhccHHHHHHHHHHC-------CCCCCCeEEecCCccc
Q 002207 163 NVDIVFPTIHGRFGED--GGIQEVLEKY-NVPFVGTGSRACRQAFDKYDASLEMSKQ-------GFITVPSFLLQGSEVN 232 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEd--g~iq~lle~~-gIpyvGs~~~a~~i~~DK~~~k~~l~~~-------Giptp~~~~~~~~~~~ 232 (953)
.+|+|+-=+.+ ++ ..+|++.+.+ +++++ -++.+....+|+..+.+++++. .|.+|++..+.+...
T Consensus 52 pfDvIlHKltd---~~~~~~l~~y~~~hP~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~- 126 (307)
T PF05770_consen 52 PFDVILHKLTD---EDWVQQLEEYIKKHPEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAE- 126 (307)
T ss_dssp -SCEEEE--CH---CHHHHHHHHHHHH-TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHC-
T ss_pred CcEEEEEeCCC---HHHHHHHHHHHHHCCCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHH-
Confidence 46887776654 22 3466666664 67776 4678999999999999888764 688999999885422
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCC---ceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC-CCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGS---SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE-GGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gs---S~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~-Gg~E~tv~Vl~ 308 (953)
++.+..+. ..+.||+|+||....| |-.+.++.+.+.+.+ ....+++||||. ||.=|-|-|+|
T Consensus 127 --~~~~~l~~---agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~---------L~~P~VlQeFVNHggvLfKVyVvG 192 (307)
T PF05770_consen 127 --SLPELLKE---AGLKFPLICKPLVACGSADSHKMAIVFNEEGLKD---------LKPPCVLQEFVNHGGVLFKVYVVG 192 (307)
T ss_dssp --CHHHHHHC---TTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-----------SSEEEEE----TTEEEEEEEET
T ss_pred --HHHHHHHH---CCCcccEEeeehhhcCCccceEEEEEECHHHHhh---------cCCCEEEEEeecCCCEEEEEEEec
Confidence 22222222 3478999999976543 678889999988542 245799999993 56999999994
Q ss_pred eCCCCccccEE--ecceEEEEeccCccccccCCcccccccC--ccCCCce-EEE-cCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 309 VGSGFDCHPVV--LLPTEVELQFQGSVDVREKDAIFNYRRK--YLPTQQV-AYH-TPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 309 ~~~g~~~~~v~--l~~~ei~~~~~~~~~~~~~~~~~dy~~K--y~~~~~~-~~~-~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+.-..+. +.|. +. . .+......+|++..- ....... ... .+......-.+.++++|..+-++||
T Consensus 193 ----d~v~~v~R~SLpn-~~--~---~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lg 262 (307)
T PF05770_consen 193 ----DKVFVVKRPSLPN-VS--S---GKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALG 262 (307)
T ss_dssp ----TEEEEEEEE---------S---SS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT
T ss_pred ----CEEEEEECCCCCC-CC--c---ccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhC
Confidence 3211111 1110 00 0 000001235555422 1111100 000 0221111123568899999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccC-CcEEEEeecCCCCCCCc
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEW-GTILFTDINLISGMEQT 430 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~d-G~~~~lEIN~~PG~t~~ 430 (953)
+. +.++|+++. ..+ |++++++||-.||...-
T Consensus 263 L~-LFgfDvI~~----------------~~t~~~~~VIDINyFPgY~~v 294 (307)
T PF05770_consen 263 LT-LFGFDVIRE----------------NGTGGRYYVIDINYFPGYKKV 294 (307)
T ss_dssp -S-EEEEEEEEG----------------CCT-SSEEEEEEEES--TTTS
T ss_pred cc-eeeeEEEEE----------------cCCCCcEEEEEeccCCCccCC
Confidence 98 999999863 345 78999999999997653
No 175
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.54 E-value=6.2e-06 Score=90.05 Aligned_cols=205 Identities=21% Similarity=0.261 Sum_probs=121.5
Q ss_pred HHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHC-CCC--ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 002207 655 LLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVL--TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731 (953)
Q Consensus 655 llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~-GIp--tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~ 731 (953)
+-+..|||+.+++ ..||+.+.+. |.+. .+. .|++..+.+.+ .+.++.++. --+++||.
T Consensus 3 ~k~~~~i~~~n~~------~~~Kw~v~~~---L~~~~~l~~~LP~T~~~~~~~--------~l~~~L~~y--~~vylKP~ 63 (262)
T PF14398_consen 3 LKKQKGIPFFNPG------FFDKWEVYKA---LSRDPELRPYLPETELLTSFE--------DLREMLNKY--KSVYLKPD 63 (262)
T ss_pred hHhcCCCEEeCCC------CCCHHHHHHH---HHcCCcchhhCCCceEcCCHH--------HHHHHHHHC--CEEEEEeC
Confidence 3467899999885 4699999998 6664 343 68887776532 234444444 26899999
Q ss_pred CCCCCcceEEeCCcc-------------------cHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 732 RDGCSTGVARLCCAE-------------------DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 732 ~~gsS~GV~~v~~~~-------------------eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.|..+.||.++.-.. +++++...+.... ....+|||+.|+-
T Consensus 64 ~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------------------~~~~yIiQq~I~l 123 (262)
T PF14398_consen 64 NGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL--------------------GKRRYIIQQGIPL 123 (262)
T ss_pred CCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc--------------------CCCcEEEeCCccc
Confidence 999999998764332 2222222222211 1568999999974
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCce-EEEecCCccccccccccCCCceeEcCCC-C-C--
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPS-VTVKESGDILSLEEKFQGGTGINLTPPP-A-S-- 867 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~-~~i~~~~~~~d~~~Ky~~g~~~~~~P~~-~-~-- 867 (953)
. ..+|.. .++.|-+--+..+.+.+.+. .++-..+.+-+ ....|.. ..|.. . .
T Consensus 124 ~----------------~~~gr~--fD~RvlvqK~~~G~W~vtg~~~Rva~~~~ivT---N~~~GG~--~~~~~~~l~~~ 180 (262)
T PF14398_consen 124 A----------------TYDGRP--FDFRVLVQKNGSGKWQVTGIVARVAKPGSIVT---NLSQGGT--ALPFEEVLRQS 180 (262)
T ss_pred c----------------ccCCCe--EEEEEEEEECCCCCEEEEEEEEEEcCCCCcee---ccCCCce--ecCHHHHHHhh
Confidence 3 112210 25666665544333333322 23333333322 2222221 11110 0 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC----C-cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 868 IMSTEALDKCKQRIELIANALQ----L-EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg----~-~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
.-...+.++|.+.|..++++|. . -|=..+|+-+|. +|++|+||||+.|+-....
T Consensus 181 ~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~-~g~iWliEvN~kP~~~~~~ 239 (262)
T PF14398_consen 181 EEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDK-NGKIWLIEVNSKPGKFDFR 239 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcC-CCCEEEEEEeCCCCcchhh
Confidence 0124567778888888886664 3 345689999995 7999999999999966543
No 176
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.48 E-value=2.8e-06 Score=92.68 Aligned_cols=194 Identities=17% Similarity=0.143 Sum_probs=115.1
Q ss_pred HHHcCCccEECCCHHHHHHhccHHHHHHHHHHCC-CC--CCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCC
Q 002207 184 VLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQG-FI--TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG 260 (953)
Q Consensus 184 lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~G-ip--tp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~g 260 (953)
+-+..|+||.++. ..||+.+.+.|.... +. .|++..+.+.+ .+..++.+ ..-|++||..|+
T Consensus 3 ~k~~~~i~~~n~~------~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~----~l~~~L~~------y~~vylKP~~Gs 66 (262)
T PF14398_consen 3 LKKQKGIPFFNPG------FFDKWEVYKALSRDPELRPYLPETELLTSFE----DLREMLNK------YKSVYLKPDNGS 66 (262)
T ss_pred hHhcCCCEEeCCC------CCCHHHHHHHHHcCCcchhhCCCceEcCCHH----HHHHHHHH------CCEEEEEeCCCC
Confidence 4467899999863 479999999999864 22 46666665533 24444432 125999999999
Q ss_pred CceeEEEeC----------------------CHHHHHHHHHHhHhcCCCCcEEEeccCC----CCeEEEEEEEEeCCCCc
Q 002207 261 SSIGVTVAY----------------------GVIDSLKKAKGIILEGIDDRVVVELFLE----GGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 261 sS~GV~~v~----------------------~~~el~~~a~~~~~~~~~~~vlVEefI~----Gg~E~tv~Vl~~~~g~~ 314 (953)
.|.||.++. +.+++.......+ ....+|||+.|+ +|+-|.+-|+-..++ .
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~-~ 142 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL---GKRRYIIQQGIPLATYDGRPFDFRVLVQKNG-S 142 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc---CCCcEEEeCCccccccCCCeEEEEEEEEECC-C
Confidence 999997753 2345554444432 345899999994 126544444432222 1
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-----CCCHHHHHHHHHHHHHHHHHhC----C-C
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-----RFPIVVINSIREGASLLFQRLG----L-C 384 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-----~l~~~~~~~i~~~a~~~~~aLg----~-~ 384 (953)
+.-.+.... +.+.. .+ .+...+..|+. ...... .-...+.++|.+.|..++++|. . -
T Consensus 143 G~W~vtg~~-~Rva~--------~~---~ivTN~~~GG~-~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~ 209 (262)
T PF14398_consen 143 GKWQVTGIV-ARVAK--------PG---SIVTNLSQGGT-ALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHL 209 (262)
T ss_pred CCEEEEEEE-EEEcC--------CC---CceeccCCCce-ecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 222221111 11111 11 12233333331 111100 1134467778888888887764 3 3
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCC
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 427 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~ 427 (953)
|-..+|+-+ |.+|++|++|||+.|+-
T Consensus 210 gElGiDl~i-----------------D~~g~iWliEvN~kP~~ 235 (262)
T PF14398_consen 210 GELGIDLGI-----------------DKNGKIWLIEVNSKPGK 235 (262)
T ss_pred eEEEEEEEE-----------------cCCCCEEEEEEeCCCCc
Confidence 567899876 78999999999999993
No 177
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.36 E-value=3.8e-06 Score=85.33 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=71.5
Q ss_pred ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc-ccHHHHHHHHHHHHhhCCCCCcccccc
Q 002207 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA-EDLTVYVKALEECLLRIPPNSFSRAHG 772 (953)
Q Consensus 694 tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~-~eL~~~~~al~~a~~~~~~~~~~~~~~ 772 (953)
+|++.+.++. +.+.++.++.+ . +|+||..+.++.||.++... .++.. .++.....
T Consensus 12 ~P~T~vs~~~--------~~i~~f~~~~~-~-~VlKPl~g~gG~gV~~i~~~~~n~~~---i~e~~~~~----------- 67 (173)
T PF02955_consen 12 IPPTLVSRDK--------EEIRAFIEEHG-D-IVLKPLDGMGGRGVFRISRDDPNLNS---ILETLTKN----------- 67 (173)
T ss_dssp S--EEEES-H--------HHHHHHHHHHS-S-EEEEESS--TTTT-EEE-TT-TTHHH---HHHHHTTT-----------
T ss_pred CcCEEEECCH--------HHHHHHHHHCC-C-EEEEECCCCCCcCEEEEcCCCCCHHH---HHHHHHhc-----------
Confidence 4666555432 23455666664 4 99999999999999999874 33442 22222211
Q ss_pred cccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceE-EEecCCccccccc
Q 002207 773 MIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEE 851 (953)
Q Consensus 773 ~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~-~i~~~~~~~d~~~ 851 (953)
....+|+|+|++.- -+| |.++-++... ..+.+ ++...+ ||..
T Consensus 68 -------~~~~~mvQ~flp~i-----------------~~G-----DkRii~~nG~-----~~~av~R~P~~g---d~R~ 110 (173)
T PF02955_consen 68 -------GERPVMVQPFLPEI-----------------KEG-----DKRIILFNGE-----PSHAVRRIPAKG---DFRS 110 (173)
T ss_dssp -------TTS-EEEEE--GGG-----------------GG------EEEEEEETTE-----E-SEEEEE--SS----S--
T ss_pred -------CCccEEEEeccccc-----------------cCC-----CEEEEEECCE-----EhHHeecCCCCC---Ccee
Confidence 14679999999852 245 8888887643 22233 444334 3344
Q ss_pred cccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcc--eEEEEEEEEcCCCcEEEEeeCC
Q 002207 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEG--FSRIDAFVNVDNGEVLIIEVNT 914 (953)
Q Consensus 852 Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G--~ariDf~v~~~~g~~~viEINt 914 (953)
....|...... . ++++ -++.|+++...|.-+| |++||++ . + |+.|||.
T Consensus 111 N~~~Gg~~~~~--~---lt~~----e~~i~~~i~~~L~~~Gl~f~GiDvi-g---~--~l~EiNv 160 (173)
T PF02955_consen 111 NLAAGGSAEPA--E---LTER----EREICEQIGPKLREDGLLFVGIDVI-G---D--KLTEINV 160 (173)
T ss_dssp -GGGTSCEEEE--E-----HH----HHHHHHHHHHHHHHTT--EEEEEEE-T---T--EEEEEE-
T ss_pred eeccCCceeec--C---CCHH----HHHHHHHHHHHHhhcCcEEEEEecc-c---c--ceEEEec
Confidence 33334333322 2 2333 3445555555554443 7999963 2 2 8999995
No 178
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.30 E-value=4.2e-06 Score=85.03 Aligned_cols=136 Identities=19% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCC
Q 002207 220 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGG 299 (953)
Q Consensus 220 tp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg 299 (953)
+|++++..+.+ .+.++++.. +. +||||..+.+|.||.++...+.-.+...+.+.......+|+|+|++.-
T Consensus 12 ~P~T~vs~~~~----~i~~f~~~~-----~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i 81 (173)
T PF02955_consen 12 IPPTLVSRDKE----EIRAFIEEH-----GD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEI 81 (173)
T ss_dssp S--EEEES-HH----HHHHHHHHH-----SS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGG
T ss_pred CcCEEEECCHH----HHHHHHHHC-----CC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccc
Confidence 46666655432 355555432 22 999999999999999987643222333333333345679999999521
Q ss_pred --eEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHH
Q 002207 300 --SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 377 (953)
Q Consensus 300 --~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~ 377 (953)
-|.++.+++ | .++- . +.-.+ .--||++....|+... +..++++. +++|.++
T Consensus 82 ~~GDkRii~~n---G---~~~~--a--v~R~P----------~~gd~R~N~~~Gg~~~---~~~lt~~e----~~i~~~i 134 (173)
T PF02955_consen 82 KEGDKRIILFN---G---EPSH--A--VRRIP----------AKGDFRSNLAAGGSAE---PAELTERE----REICEQI 134 (173)
T ss_dssp GG-EEEEEEET---T---EE-S--E--EEEE------------SS-S---GGGTSCEE---EEE--HHH----HHHHHHH
T ss_pred cCCCEEEEEEC---C---EEhH--H--eecCC----------CCCCceeeeccCCcee---ecCCCHHH----HHHHHHH
Confidence 278888883 2 2221 1 11111 1235666666665332 23455555 4555555
Q ss_pred HHHhCCCC--eeEeeee
Q 002207 378 FQRLGLCD--FARIDGW 392 (953)
Q Consensus 378 ~~aLg~~G--~arVDf~ 392 (953)
...|.-+| |++||++
T Consensus 135 ~~~L~~~Gl~f~GiDvi 151 (173)
T PF02955_consen 135 GPKLREDGLLFVGIDVI 151 (173)
T ss_dssp HHHHHHTT--EEEEEEE
T ss_pred HHHHhhcCcEEEEEecc
Confidence 55553333 9999975
No 179
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.96 E-value=0.00031 Score=81.35 Aligned_cols=108 Identities=16% Similarity=0.111 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC--CCCc--ceEEeCCcccHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD--GCST--GVARLCCAEDLTVY 751 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~--gsS~--GV~~v~~~~eL~~~ 751 (953)
+++.+|++ |+++|||+|++.++.+.+ .+.++.+++++||++|||... |.|. ||.++.+.+++.+
T Consensus 4 ~e~~ak~l---L~~~gIpvp~~~~~~~~~--------ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~- 71 (388)
T PRK00696 4 HEYQAKEL---FAKYGVPVPRGIVATTPE--------EAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEARE- 71 (388)
T ss_pred CHHHHHHH---HHHcCCCCCCCeeeCCHH--------HHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHH-
Confidence 67889998 999999999999887643 233455667349999999743 2333 9999887777765
Q ss_pred HHHHHHHHhhCCCCCc-ccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 752 VKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 752 ~~al~~a~~~~~~~~~-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
+.++.+.. .+ .+..+ .+......++||+++++. +|+.+++..+.
T Consensus 72 --a~~~i~~~----~~~~~~~~---~~g~~~~gvlVe~~~~~~------------------------~E~~vg~~~D~ 116 (388)
T PRK00696 72 --FAKQILGM----TLVTHQTG---PKGQPVNKVLVEEGADIA------------------------KEYYLSIVLDR 116 (388)
T ss_pred --HHHHhhcc----ceeeeccC---CCCCEEeEEEEEeccCCC------------------------ceEEEEEEEcC
Confidence 44443321 00 00000 000113469999999843 49999999875
No 180
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.89 E-value=0.00035 Score=75.16 Aligned_cols=202 Identities=15% Similarity=0.112 Sum_probs=110.4
Q ss_pred HHHhcChHHHHHHHHHHHHCC--CCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccH
Q 002207 671 SKTCMDKVATSLALNHLADLG--VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 748 (953)
Q Consensus 671 s~l~~DK~~tk~~~~~l~~~G--Iptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL 748 (953)
...|.||+..++. +++.+ ...||...+.+.. .+ ++ ...| ..++|+||+.++++.+|....+.-+.
T Consensus 15 ~~~~~DK~~VR~y---v~~~~g~~~l~pll~v~~~~------~~-i~--~~~L-p~~fViK~nhgsg~~~i~~dk~~~d~ 81 (239)
T PF14305_consen 15 FTKLADKYAVREY---VEEKIGEEYLPPLLGVYDNP------DD-ID--FDSL-PDKFVIKPNHGSGSNIIVRDKSKLDI 81 (239)
T ss_pred ceecchHHHHHHH---HHHhCCCceECceeecCCCh------hh-hh--hhcC-CCCEEEEEecCCCcEEEEeCCcccCH
Confidence 3568899999998 66664 2345544433221 01 10 2356 57899999999999888887776666
Q ss_pred HHHHHHHHHHHhhCCCCCcccccccccCC-CCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcC
Q 002207 749 TVYVKALEECLLRIPPNSFSRAHGMIEMP-NPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK 827 (953)
Q Consensus 749 ~~~~~al~~a~~~~~~~~~~~~~~~~~~p-~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~ 827 (953)
....+-+...++. +.... -.|.. ..-.+.+|||++++... | ..-.++-+-++..
T Consensus 82 ~~~~~~~~~wl~~---~~~~~---~~E~~Y~~i~prIivE~~l~~~~------------------~-~~~~DYKf~cF~G 136 (239)
T PF14305_consen 82 EEAKKKLNRWLKK---DYYYQ---SREWHYKNIKPRIIVEELLEDED------------------G-KIPRDYKFFCFNG 136 (239)
T ss_pred HHHHHHHHHHhhh---ccccc---cccccCcCCCceEEEEeccccCC------------------C-CCcceEEEEEECC
Confidence 6544444443332 11000 01110 11257899999997641 0 0013666666653
Q ss_pred CCCceeeCceEEEe----cCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcC
Q 002207 828 CGSMHSLMPSVTVK----ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD 903 (953)
Q Consensus 828 ~~~~~~~~p~~~i~----~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~ 903 (953)
. ...+. +... ....+||.+=+...-. .-.|.....--++..+++.++|+++.+-+. +.||||...
T Consensus 137 ~--~~~i~--v~~~r~~~~~~~~yd~dw~~l~~~--~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~-- 205 (239)
T PF14305_consen 137 K--PKFIQ--VDSDRFGNHKRNFYDRDWNRLPFR--SDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYNV-- 205 (239)
T ss_pred E--EEEEE--EEeCCCCCeEEEEECcccCCCccc--cCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEEe--
Confidence 2 11110 0100 0122444331111110 001111111235667888888888776643 899999887
Q ss_pred CCcEEEEeeCCCCCCCCC
Q 002207 904 NGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 904 ~g~~~viEINt~PGlt~~ 921 (953)
+|++||-|+-..||-.-.
T Consensus 206 ~~~iyFGElTf~p~~G~~ 223 (239)
T PF14305_consen 206 DGKIYFGELTFTPGAGFE 223 (239)
T ss_pred CCcEEEEeeecCCCCcCC
Confidence 589999999988876543
No 181
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=97.86 E-value=0.0001 Score=76.97 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=63.4
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCC----ceeEEEeCCHHHHHHHHHHh
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS----SIGVTVAYGVIDSLKKAKGI 281 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gs----S~GV~~v~~~~el~~~a~~~ 281 (953)
-+..|++|+++|||+|++.++.+.++.. .....++ ..++||||---.+ +=||.++++.+|+.+.+.++
T Consensus 4 EyqaK~ll~~~gi~vp~g~~a~s~eea~----~~~~~l~----~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~m 75 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVVATSPEEAR----EAAKELG----GKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEM 75 (202)
T ss_dssp HHHHHHHHHCTT----SEEEESSHHHHH----HHHHHHT----TSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCCeeecCCHHHHH----HHHHHhC----CCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHH
Confidence 4778999999999999999998765432 2222221 2368999954333 34789999999999999887
Q ss_pred HhcCC-----------CCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 282 ILEGI-----------DDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 282 ~~~~~-----------~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.... -..+|||++++=.+|+-++++-|..
T Consensus 76 lg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~ 116 (202)
T PF08442_consen 76 LGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRE 116 (202)
T ss_dssp TTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETT
T ss_pred hCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccC
Confidence 65211 2478999999766999999986643
No 182
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=97.80 E-value=0.00071 Score=78.12 Aligned_cols=97 Identities=18% Similarity=0.053 Sum_probs=71.5
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCC-cEEEeeCCC----CCceeEEEeCCHHHHHHHHHH
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRA----GSSIGVTVAYGVIDSLKKAKG 280 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-PvvVKP~~~----gsS~GV~~v~~~~el~~~a~~ 280 (953)
-+..|++|+++|||+|++.++.+.++. .+..+ ++++ |++||.... |-+-||.++.+.+|+.+.+.+
T Consensus 5 E~eak~lL~~yGIpvp~~~~~~~~~ea----~~~a~-----~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ 75 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGALAYSPEQA----VYRAR-----ELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAED 75 (392)
T ss_pred HHHHHHHHHHcCCCCCCceEECCHHHH----HHHHH-----HcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHH
Confidence 467899999999999999988765532 22222 2567 579997321 234588888899999888887
Q ss_pred hHhcC-----------CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 281 IILEG-----------IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 281 ~~~~~-----------~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
++... .-..++||+++.+++|+-+++..|..
T Consensus 76 ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~ 117 (392)
T PRK14046 76 LLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRK 117 (392)
T ss_pred HhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCC
Confidence 76531 12469999999977999999998643
No 183
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.73 E-value=0.00022 Score=79.34 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred CcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 890 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 890 ~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
+.-+.++||++|. +++||+||||..|.+...+
T Consensus 235 ~Fel~G~DfmlD~-~~kpwLLEvN~~Psl~~~~ 266 (292)
T PF03133_consen 235 CFELFGFDFMLDE-DLKPWLLEVNSNPSLSTST 266 (292)
T ss_dssp E-EEEEEEEEEBT-TS-EEEEEEESS------T
T ss_pred ccceeeeEEEecC-CCeEEEeeCCCCCCcccCC
Confidence 3457899999985 7999999999999998765
No 184
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.71 E-value=0.001 Score=71.58 Aligned_cols=191 Identities=18% Similarity=0.231 Sum_probs=106.1
Q ss_pred HHHhccHHHHHHHHHHCC--CCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCC---HHHH
Q 002207 200 CRQAFDKYDASLEMSKQG--FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDS 274 (953)
Q Consensus 200 ~~i~~DK~~~k~~l~~~G--iptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~---~~el 274 (953)
...+.||+..+.++++.+ ...||.+.+.+... + +..+.+..++|+||++++++.+|....+ ..++
T Consensus 15 ~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~---~-------i~~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~ 84 (239)
T PF14305_consen 15 FTKLADKYAVREYVEEKIGEEYLPPLLGVYDNPD---D-------IDFDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEA 84 (239)
T ss_pred ceecchHHHHHHHHHHhCCCceECceeecCCChh---h-------hhhhcCCCCEEEEEecCCCcEEEEeCCcccCHHHH
Confidence 456789999999999986 33344444433211 1 1123456689999999999998877653 3333
Q ss_pred HHHHHHhHhc------------CCCCcEEEeccCC--CC---eEEEEEEEEeCCCCccccEEecceEEEEeccCcccccc
Q 002207 275 LKKAKGIILE------------GIDDRVVVELFLE--GG---SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE 337 (953)
Q Consensus 275 ~~~a~~~~~~------------~~~~~vlVEefI~--Gg---~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~ 337 (953)
...+.+.+.. ...+++|||++|. ++ .+|-+-+++ +.+..+. +..... ...
T Consensus 85 ~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~------G~~~~i~-----v~~~r~--~~~ 151 (239)
T PF14305_consen 85 KKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFN------GKPKFIQ-----VDSDRF--GNH 151 (239)
T ss_pred HHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEEC------CEEEEEE-----EEeCCC--CCe
Confidence 3333332221 1347999999994 22 478888773 2333211 111100 000
Q ss_pred CCcccccccCccCCCceEE-EcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcE
Q 002207 338 KDAIFNYRRKYLPTQQVAY-HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 416 (953)
Q Consensus 338 ~~~~~dy~~Ky~~~~~~~~-~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~ 416 (953)
...+||.+-+..+-. ..+ ..+..--++..+++.++|+++.+-+ .+.||||.. .+|++
T Consensus 152 ~~~~yd~dw~~l~~~-~~~~~~~~~~kP~~l~emi~iA~~Ls~~f---~fvRVDlY~------------------~~~~i 209 (239)
T PF14305_consen 152 KRNFYDRDWNRLPFR-SDYPPDEDIPKPKNLEEMIEIAEKLSKGF---PFVRVDLYN------------------VDGKI 209 (239)
T ss_pred EEEEECcccCCCccc-cCCCCCCCCCCChhHHHHHHHHHHHccCC---CEEEEEEEE------------------eCCcE
Confidence 223555443322210 011 0111122344466667776665553 599999853 46789
Q ss_pred EEEeecCCCCCCCcchHHH
Q 002207 417 LFTDINLISGMEQTSFLFQ 435 (953)
Q Consensus 417 ~~lEIN~~PG~t~~S~~p~ 435 (953)
||=|+=..||-....++|.
T Consensus 210 yFGElTf~p~~G~~~~~p~ 228 (239)
T PF14305_consen 210 YFGELTFTPGAGFEPFFPP 228 (239)
T ss_pred EEEeeecCCCCcCCCCCCH
Confidence 9999998887443344444
No 185
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=97.60 E-value=0.0017 Score=72.53 Aligned_cols=97 Identities=23% Similarity=0.222 Sum_probs=72.2
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCC-CcEEEeeCCC--CC--ceeEEEeCCHHHHHHHHHH
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNS-GKVVVKPTRA--GS--SIGVTVAYGVIDSLKKAKG 280 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~~~--gs--S~GV~~v~~~~el~~~a~~ 280 (953)
-|..|++|+++|||+|+.++..+.++ +.++.++ ++ .|+|||+--- |- +=||.++.|.+|+.+.+.+
T Consensus 5 EYqaKelf~~~GiPvp~g~v~~s~ee----a~~~a~~-----lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~ 75 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYVATSPEE----AEEAAKE-----LGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEE 75 (387)
T ss_pred HHHHHHHHHHcCCCCCCceeeeCHHH----HHHHHHH-----hCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHH
Confidence 47889999999999999999887653 3333333 33 5999999542 22 3389999999999999998
Q ss_pred hHh----cC----CCCcEEEeccCC-CCeEEEEEEEEeCC
Q 002207 281 IIL----EG----IDDRVVVELFLE-GGSEFTAIVLDVGS 311 (953)
Q Consensus 281 ~~~----~~----~~~~vlVEefI~-Gg~E~tv~Vl~~~~ 311 (953)
++. .. .-..+|||++++ -.+||-++++-|..
T Consensus 76 ~lg~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~ 115 (387)
T COG0045 76 ILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRS 115 (387)
T ss_pred HhCcccccCcCCceeeEEEEEecCCCccceEEEEEEEEcC
Confidence 875 11 235899999997 42499999886643
No 186
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.56 E-value=0.00056 Score=76.05 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=23.2
Q ss_pred cEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC
Q 002207 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297 (953)
Q Consensus 251 PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~ 297 (953)
-+|+||..+..|.||.++++.+++.+.. ......++||+||+
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~~-----~~~~~~~vvQkYI~ 108 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRFS-----KNKNQPYVVQKYIE 108 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCCH-----CCTTS-EEEEE--S
T ss_pred EEEEeccccCCCCCceecCCHHHHHHHh-----hhhhhhhhhhhccC
Confidence 4999999999999999999988866431 12457899999995
No 187
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=97.55 E-value=0.0021 Score=74.54 Aligned_cols=100 Identities=18% Similarity=0.088 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCC--CCCc---------eeEEEeCCHH
Q 002207 204 FDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR--AGSS---------IGVTVAYGVI 272 (953)
Q Consensus 204 ~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~--~gsS---------~GV~~v~~~~ 272 (953)
..-+..|++|+++|||+|++.++.+.++. .+..+.++ ..++|+|||+.- ||-+ -||.++++ +
T Consensus 30 l~EyqaK~LL~~~GIpvp~~~va~t~eea----~~aa~~l~--~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-e 102 (422)
T PLN00124 30 IHEYQGAELMSKYGVNVPKGAAASSLDEV----KKALEKMF--PDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-D 102 (422)
T ss_pred CCHHHHHHHHHHcCCCCCCceeeCCHHHH----HHHHHHhc--ccCCcEEEEEEeccCCccccccccccCCeEEECCH-H
Confidence 35778899999999999999988775432 22222221 126799999983 4333 34667766 8
Q ss_pred HHHHHHHHhHhcC-----------CCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 273 DSLKKAKGIILEG-----------IDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 273 el~~~a~~~~~~~-----------~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
|+.+.+.+++... .-+.++|||.+..++|+-+++..|.
T Consensus 103 ea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 103 KAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred HHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEecc
Confidence 8888887776431 1135786666654599999999764
No 188
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0016 Score=70.79 Aligned_cols=211 Identities=17% Similarity=0.204 Sum_probs=129.2
Q ss_pred CCcEEEEecCCC-CCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCC---CCccCeEEEeCcccc
Q 002207 634 NQATVFIAVHGG-IGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG---VLTINKDVRRKEDLL 706 (953)
Q Consensus 634 ~~dvvf~~~hG~-~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~G---Iptp~~~~v~~~~~~ 706 (953)
++|+||+--|-. ..+++ +|---|...|||.+.+=.-+...|--.+.++++.++....| +|..+.......
T Consensus 155 kPdfVlirqhA~~mA~~~d~rslvig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnH--- 231 (488)
T KOG3895|consen 155 KPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNH--- 231 (488)
T ss_pred cCCEEEEcccchhhccccchHHHHHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCc---
Confidence 479999998884 44333 55566788999998776555555644455666655566777 454443332221
Q ss_pred CCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEE
Q 002207 707 KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 786 (953)
Q Consensus 707 ~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlV 786 (953)
+.....- .||+|||=..+.++.|=-+|+|.+|+.+....++-. ...+-+
T Consensus 232 --------K~m~s~~-tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~----------------------~Tyat~ 280 (488)
T KOG3895|consen 232 --------KEMLSQP-TYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALT----------------------KTYATA 280 (488)
T ss_pred --------hhhccCC-CCcEEEEecccccccceeeecchhhhHhHHHHHHHH----------------------hhhhhc
Confidence 1112222 699999999999999999999999998754444333 244678
Q ss_pred eccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCC
Q 002207 787 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866 (953)
Q Consensus 787 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~ 866 (953)
|+||+.. .++.+.-+|.+-..+ ++..-.+.| |-+.|+. .. .+
T Consensus 281 epFiDaK------------------------YDiriQKIG~nYKay-----mRtsIsgnW-----KtNtGSa--mL-EQ- 322 (488)
T KOG3895|consen 281 EPFIDAK------------------------YDIRIQKIGHNYKAY-----MRTSISGNW-----KTNTGSA--ML-EQ- 322 (488)
T ss_pred ccccccc------------------------ceeehhhhhhhHHHH-----hhhhhccCc-----ccCchHH--HH-HH-
Confidence 9999975 355555566542211 000001111 1111211 00 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC--CCCCCCC
Q 002207 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT--VPGMTPS 921 (953)
Q Consensus 867 ~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt--~PGlt~~ 921 (953)
-...++-+.....+-+.+|.-.++-||.... ++|+=|++|||- +|-+..+
T Consensus 323 ----IamseRyklwvdtcse~fGgldICav~alhs-KdGrd~i~eV~d~smpliGeh 374 (488)
T KOG3895|consen 323 ----IAMSERYKLWVDTCSEMFGGLDICAVKALHS-KDGRDYIIEVMDSSMPLIGEH 374 (488)
T ss_pred ----HHHHHHHHHHHHHHHHhcCCcceEEeeeeec-ccchhheeeeccccccccccc
Confidence 0123445556666677888888999998877 479999999995 6655554
No 189
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.27 E-value=0.0049 Score=62.76 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=95.9
Q ss_pred hHHHHHhcChHHHH-HHHHHHHHC---CCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeC
Q 002207 668 VMASKTCMDKVATS-LALNHLADL---GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 743 (953)
Q Consensus 668 ~~as~l~~DK~~tk-~~~~~l~~~---GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~ 743 (953)
..+...+.||-+.. ++++..++. .+|-.+.....+... .... ..||+|||--...++.|=.+|+
T Consensus 3 L~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~e-----------m~s~-~~fPvVvKvG~~h~G~GKvkv~ 70 (203)
T PF02750_consen 3 LHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHRE-----------MLSA-PRFPVVVKVGHAHAGMGKVKVD 70 (203)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGG-----------GCS--SSSSEEEEESS-STTTTEEEE-
T ss_pred ccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhh-----------hccC-CCCCEEEEEccccCceeEEEEc
Confidence 45666778887653 333333444 455544444433211 1112 2689999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEE
Q 002207 744 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVG 823 (953)
Q Consensus 744 ~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~ 823 (953)
|..++.++...+... ...+-+|+||+.. .++.|.
T Consensus 71 n~~~~qDi~sll~~~----------------------~~Y~T~EPfId~k------------------------yDirvq 104 (203)
T PF02750_consen 71 NQQDFQDIASLLAIT----------------------KDYATTEPFIDAK------------------------YDIRVQ 104 (203)
T ss_dssp SHHHHHHHHHHHHHH----------------------TS-EEEEE---EE------------------------EEEEEE
T ss_pred cHHHHHHHHHHHHhc----------------------CceEEeeccccce------------------------eEEEEE
Confidence 999998754444422 4668999999865 478887
Q ss_pred EEcCCCCceeeCceEEEecCCccccccccccCCCcee-EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEc
Q 002207 824 VIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN-LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV 902 (953)
Q Consensus 824 vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~-~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~ 902 (953)
-+|++- .+. ++-.-++.+ |-+.|+... -+| ..++.+..+..+.+.+|.-.++.||++...
T Consensus 105 kIG~~y--kA~---~R~sis~nW-----K~N~gsa~lEqi~---------~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k 165 (203)
T PF02750_consen 105 KIGNNY--KAY---MRTSISGNW-----KANTGSAMLEQIA---------MTERYKLWVDECSELFGGLDICAVDAIHGK 165 (203)
T ss_dssp EETTEE--EEE---EEEESSSTS-----STTSSSEEEEEE------------HHHHHHHHHHGGGGG--SEEEEEEEEET
T ss_pred EEcCeE--EEE---EEccccccc-----cccccchheeecC---------CChHHHHHHHHHHHHcCCccEEEEEEEEcC
Confidence 787652 111 121112221 223333221 122 235677788888888977779999998885
Q ss_pred CCCcEEEEeeCC
Q 002207 903 DNGEVLIIEVNT 914 (953)
Q Consensus 903 ~~g~~~viEINt 914 (953)
+|+-|++|+|-
T Consensus 166 -dGke~Iievnd 176 (203)
T PF02750_consen 166 -DGKEYIIEVND 176 (203)
T ss_dssp -TS-EEEEEEE-
T ss_pred -CCCEEEEEecC
Confidence 89999999994
No 190
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.028 Score=61.16 Aligned_cols=210 Identities=17% Similarity=0.110 Sum_probs=124.2
Q ss_pred ecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhh
Q 002207 641 AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSK 720 (953)
Q Consensus 641 ~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~ 720 (953)
+=||.+-.--.+.++.+.+-+|+.|+-.+ ...-.|...-..+ |+++||+.|..+ .+. +.
T Consensus 90 IP~gSfv~Y~G~d~ie~~~~vP~fGnR~l-LrwE~~~~~~~~l---LekAgi~~P~~~--~~P---------------ee 148 (361)
T COG1759 90 IPHGSFVAYVGYDGIENEFEVPMFGNREL-LRWEEDRKLEYKL---LEKAGLRIPKKY--KSP---------------EE 148 (361)
T ss_pred ecCCceEEEecchhhhhcccCcccccHhH-hhhhcchhhHHHH---HHHcCCCCCccc--CCh---------------HH
Confidence 44777666555667778899999998755 4444476666666 899999999854 211 12
Q ss_pred cCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccc
Q 002207 721 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 800 (953)
Q Consensus 721 lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~ 800 (953)
+ .-|++||+...-+++|-+.+.+.+|+.+ .++...+. ++|.. ..-..+.|||||-|..+..
T Consensus 149 I-dr~VIVK~pgAkggRGyFiA~s~eef~e---k~e~l~~~----------gvi~~--edlkna~IeEYv~G~~f~~--- 209 (361)
T COG1759 149 I-DRPVIVKLPGAKGGRGYFIASSPEEFYE---KAERLLKR----------GVITE--EDLKNARIEEYVVGAPFYF--- 209 (361)
T ss_pred c-CCceEEecCCccCCceEEEEcCHHHHHH---HHHHHHHc----------CCcch--hhhhhceeeEEeeccceee---
Confidence 3 4699999999888999999999999886 33333321 11100 0125689999999974433
Q ss_pred cccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEec-CCccccccccccCC----Cce---eEcCCCCCCCCHH
Q 002207 801 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-SGDILSLEEKFQGG----TGI---NLTPPPASIMSTE 872 (953)
Q Consensus 801 ~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~-~~~~~d~~~Ky~~g----~~~---~~~P~~~~~l~~~ 872 (953)
.+--+.+.+. ...+.-..++.. -.+++...++.+-. .+- -..|.. +-+.
T Consensus 210 ------------------~yFyS~i~~~--lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~v---lRES 266 (361)
T COG1759 210 ------------------HYFYSPIKDR--LELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVV---LRES 266 (361)
T ss_pred ------------------eeeeccccCc--eeEeeeeheeeccchhhccCCHHHHhhcCCCceEEEECCcchh---hHHH
Confidence 1111111111 000000011111 12233333333210 000 012332 4566
Q ss_pred HHHHHHHHHHHHHHHc------CCcceEEEEEEEEcCCCcEEEEeeCC
Q 002207 873 ALDKCKQRIELIANAL------QLEGFSRIDAFVNVDNGEVLIIEVNT 914 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aL------g~~G~ariDf~v~~~~g~~~viEINt 914 (953)
++.++-+++.+..++- |+-|..-.+..+++ +=++|+.|+-+
T Consensus 267 LL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~-dl~~vVfevS~ 313 (361)
T COG1759 267 LLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTD-DLEFVVFEVSA 313 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecC-CccEEEEEEec
Confidence 7777777777666543 56788889999985 67899999975
No 191
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=96.98 E-value=0.016 Score=67.14 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCc-EEEecCC----CCCCcceEEeCCcccHHHH
Q 002207 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-LCVKPAR----DGCSTGVARLCCAEDLTVY 751 (953)
Q Consensus 677 K~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~P-lvVKP~~----~gsS~GV~~v~~~~eL~~~ 751 (953)
-+..|++ |+++|||+|++.++.+.+ .+.+..+++ ++| ++||.-. -+-+-||....+.+++.+
T Consensus 5 E~eak~l---L~~yGIpvp~~~~~~~~~--------ea~~~a~~l-g~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~- 71 (392)
T PRK14046 5 EYQAKEL---LASFGVAVPRGALAYSPE--------QAVYRAREL-GGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRD- 71 (392)
T ss_pred HHHHHHH---HHHcCCCCCCceEECCHH--------HHHHHHHHc-CCCcEEEEeeeccCCCCcCCeEEEECCHHHHHH-
Confidence 3566777 999999999999887643 234556778 584 6999732 233457888877777665
Q ss_pred HHHHHHHHhhCCCCCc-ccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 752 VKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 752 ~~al~~a~~~~~~~~~-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
+.++.+.. .+ .+.++ .+...-..++||+++++. +|+-+++..+.
T Consensus 72 --a~~~ll~~----~~~~~~~~---~~g~~v~~vlVe~~~~~~------------------------~E~ylgi~~D~ 116 (392)
T PRK14046 72 --AAEDLLGK----KLVTHQTG---PEGKPVQRVYVETADPIE------------------------RELYLGFVLDR 116 (392)
T ss_pred --HHHHHhcc----hhhhhccC---CCCCeeeeEEEEEecCCC------------------------cEEEEEEEECC
Confidence 34433321 00 00000 000124679999999864 49999998775
No 192
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0078 Score=65.60 Aligned_cols=200 Identities=15% Similarity=0.086 Sum_probs=117.7
Q ss_pred cCcCEEEEcCCCC-C--CCc-hHHHHHHHcCCccEECCCHHHHHHhccHHH-HHH---HHHHCC---CCCCCeEEecCCc
Q 002207 162 ANVDIVFPTIHGR-F--GED-GGIQEVLEKYNVPFVGTGSRACRQAFDKYD-ASL---EMSKQG---FITVPSFLLQGSE 230 (953)
Q Consensus 162 ~~~D~vf~~lhG~-~--GEd-g~iq~lle~~gIpyvGs~~~a~~i~~DK~~-~k~---~l~~~G---iptp~~~~~~~~~ 230 (953)
.++|+||..-|.. . +|| ..+---|...|||++.+-..+.. ..||.. +++ +....| ||..+.....+..
T Consensus 154 fkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~vNSl~Svyn-Fcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK 232 (488)
T KOG3895|consen 154 FKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSVNSLTSVYN-FCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHK 232 (488)
T ss_pred ccCCEEEEcccchhhccccchHHHHHHHHhcCCcccchhHHHHH-hccchHHHHHHHHHHHhcCccccccceeeecCCch
Confidence 3799999998753 2 233 24556678899999965444344 445544 433 344555 5554443333321
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
. . +....||+|||=..+-+++|=.+|+|-+|+.+.+.-. + -.+..+-+|.||+...++.+.-++
T Consensus 233 ~---m---------~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svv-a-l~~Tyat~epFiDaKYDiriQKIG-- 296 (488)
T KOG3895|consen 233 E---M---------LSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVV-A-LTKTYATAEPFIDAKYDIRIQKIG-- 296 (488)
T ss_pred h---h---------ccCCCCcEEEEecccccccceeeecchhhhHhHHHHH-H-HHhhhhhccccccccceeehhhhh--
Confidence 1 0 1235699999999999999999999988865443321 1 024567799999864556665553
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCC-HHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFP-IVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~-~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
.+ ..+..-+- ....|..+.++ +-|. -...++-+-....+-..+|--++|-|
T Consensus 297 --~n--YKaymRts-------------------IsgnWKtNtGS-----amLEQIamseRyklwvdtcse~fGgldICav 348 (488)
T KOG3895|consen 297 --HN--YKAYMRTS-------------------ISGNWKTNTGS-----AMLEQIAMSERYKLWVDTCSEMFGGLDICAV 348 (488)
T ss_pred --hh--HHHHhhhh-------------------hccCcccCchH-----HHHHHHHHHHHHHHHHHHHHHhcCCcceEEe
Confidence 11 11111110 11223222111 0011 11234445556666677888889999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecC
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~ 423 (953)
|... .+||+=|++|||-
T Consensus 349 ~alh-----------------sKdGrd~i~eV~d 365 (488)
T KOG3895|consen 349 KALH-----------------SKDGRDYIIEVMD 365 (488)
T ss_pred eeee-----------------cccchhheeeecc
Confidence 9764 6899999999994
No 193
>PLN02235 ATP citrate (pro-S)-lyase
Probab=96.93 E-value=0.03 Score=64.40 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHC-----CCCCCCeEEe-cCCccchhhhhhhhhhcCCCCCCC-cEEEeeCCCCCc----eeEEEeCCHHH
Q 002207 205 DKYDASLEMSKQ-----GFITVPSFLL-QGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSS----IGVTVAYGVID 273 (953)
Q Consensus 205 DK~~~k~~l~~~-----Giptp~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-PvvVKP~~~gsS----~GV~~v~~~~e 273 (953)
.-+..|++|+++ |||+|...+. .+.++ +.+..++.. .+++ ++||||--..++ =||.++++.+|
T Consensus 7 ~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee----~~~~~~~~~--~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~E 80 (423)
T PLN02235 7 REYDSKRLLKEHLKRLAGIDLPIRSAQVTESTD----FNELANKEP--WLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQ 80 (423)
T ss_pred cHHHHHHHHHHhhcccCCCCCCCCeeccCCHHH----HHHHHHhhh--hhCCCcEEEEcccccCCCcccCceEEeCCHHH
Confidence 346788999998 9999999877 55432 222222210 1333 579999764443 46889999999
Q ss_pred HHHHHHHhHhcCC--------CCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 274 SLKKAKGIILEGI--------DDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 274 l~~~a~~~~~~~~--------~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.+.+.+++.... -..+|||++++=.+|+-++++-+..
T Consensus 81 a~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~ 126 (423)
T PLN02235 81 VATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRL 126 (423)
T ss_pred HHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecC
Confidence 9999988775321 2378999999655999999987643
No 194
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=96.92 E-value=0.006 Score=64.84 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC-----CCcceEE-eCCcccHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG-----CSTGVAR-LCCAEDLT 749 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~g-----sS~GV~~-v~~~~eL~ 749 (953)
+-..++++ |+.+|||+|++..+.+.+ ...+..+++ +||+++|-.... ---||.. +.+.+++.
T Consensus 11 ~e~e~~~l---L~~yGI~~~~~~~~~~~~--------ea~~~a~~i-g~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~ 78 (222)
T PF13549_consen 11 TEAEAKEL---LAAYGIPVPPTRLVTSAE--------EAVAAAEEI-GFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVR 78 (222)
T ss_dssp -HHHHHHH---HHTTT------EEESSHH--------HHHHHHHHH--SSEEEEEE-TT---HHHHT-EEEEE-SHHHHH
T ss_pred CHHHHHHH---HHHcCcCCCCeeEeCCHH--------HHHHHHHHh-CCCEEEEEecCCCCcCCCCCcEEECCCCHHHHH
Confidence 55677787 999999999999987643 234556788 699999997643 1236665 77888888
Q ss_pred HHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc-CcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 750 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE-TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 750 ~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~-G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
+..+.+....... .|......++||+.+. +. .|+.+++..+.
T Consensus 79 ~a~~~l~~~~~~~-------------~p~~~~~gvlVq~m~~~~g------------------------~El~vG~~~Dp 121 (222)
T PF13549_consen 79 EAFERLRERVAAH-------------HPGARIDGVLVQEMAPSGG------------------------RELIVGVRRDP 121 (222)
T ss_dssp HHHHHHHHHHHHH--------------TT----EEEEEE------------------------------EEEEEEEEEET
T ss_pred HHHHHHHHHHHHh-------------CCCCccceEEEEEcccCCc------------------------EEEEEEEEECC
Confidence 7666666655321 1222246899999998 32 49999998875
No 195
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=96.89 E-value=0.022 Score=63.89 Aligned_cols=91 Identities=20% Similarity=0.155 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC----CCcceEEeCCcccHHHHHH
Q 002207 678 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG----CSTGVARLCCAEDLTVYVK 753 (953)
Q Consensus 678 ~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~g----sS~GV~~v~~~~eL~~~~~ 753 (953)
+..|++ |+++|||+|+.++..+.+ .+.++..++|+.|++||+---. -+-||..+.+.+|..+
T Consensus 6 YqaKel---f~~~GiPvp~g~v~~s~e--------ea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~--- 71 (387)
T COG0045 6 YQAKEL---FAKYGIPVPPGYVATSPE--------EAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKE--- 71 (387)
T ss_pred HHHHHH---HHHcCCCCCCceeeeCHH--------HHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHH---
Confidence 566777 999999999999887643 3566777886689999995322 2348999998888765
Q ss_pred HHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 754 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 754 al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
+.++.+.. + +..++-. -+...++||++++
T Consensus 72 ~a~~~lg~---~---~q~~~~G---~~v~~vlvee~~~ 100 (387)
T COG0045 72 AAEEILGK---N---YQTDIKG---EPVNKVLVEEAVD 100 (387)
T ss_pred HHHHHhCc---c---cccCcCC---ceeeEEEEEecCC
Confidence 33443321 0 0001000 1257899999998
No 196
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=96.88 E-value=0.053 Score=55.41 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=88.5
Q ss_pred CHHHHHHhccHHHHH-HH---HHH---CCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEe
Q 002207 196 GSRACRQAFDKYDAS-LE---MSK---QGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA 268 (953)
Q Consensus 196 ~~~a~~i~~DK~~~k-~~---l~~---~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v 268 (953)
+..+.-...||-... ++ .++ ..+|..+.....+... . +....||+|||--..-+|.|=.+|
T Consensus 2 SL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~e-------m-----~s~~~fPvVvKvG~~h~G~GKvkv 69 (203)
T PF02750_consen 2 SLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHRE-------M-----LSAPRFPVVVKVGHAHAGMGKVKV 69 (203)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGG-------G-----CS-SSSSEEEEESS-STTTTEEEE
T ss_pred cccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhh-------h-----ccCCCCCEEEEEccccCceeEEEE
Confidence 345566677776533 22 223 3466655444443221 1 112578999999999999999999
Q ss_pred CCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCc
Q 002207 269 YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY 348 (953)
Q Consensus 269 ~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky 348 (953)
+|..++.+.+.-+.. ...-+.+|+||+-..++.+.-++ ++ ..+..-+ + ....|
T Consensus 70 ~n~~~~qDi~sll~~--~~~Y~T~EPfId~kyDirvqkIG----~~--ykA~~R~-----s--------------is~nW 122 (203)
T PF02750_consen 70 DNQQDFQDIASLLAI--TKDYATTEPFIDAKYDIRVQKIG----NN--YKAYMRT-----S--------------ISGNW 122 (203)
T ss_dssp -SHHHHHHHHHHHHH--HTS-EEEEE---EEEEEEEEEET----TE--EEEEEEE-----E--------------SSSTS
T ss_pred ccHHHHHHHHHHHHh--cCceEEeeccccceeEEEEEEEc----Ce--EEEEEEc-----c--------------ccccc
Confidence 999876654433222 35678999999854667776663 32 2221110 0 01223
Q ss_pred cC--CCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecC
Q 002207 349 LP--TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423 (953)
Q Consensus 349 ~~--~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~ 423 (953)
.. +...-..+| + .++.+.....+.+.+|--+++.||.+. .+||+-|++|+|-
T Consensus 123 K~N~gsa~lEqi~--~----~~ryk~Wvd~~s~lfGGlDI~~v~ai~-----------------~kdGke~Iievnd 176 (203)
T PF02750_consen 123 KANTGSAMLEQIA--M----TERYKLWVDECSELFGGLDICAVDAIH-----------------GKDGKEYIIEVND 176 (203)
T ss_dssp STTSSSEEEEEE---------HHHHHHHHHHGGGGG--SEEEEEEEE-----------------ETTS-EEEEEEE-
T ss_pred cccccchheeecC--C----ChHHHHHHHHHHHHcCCccEEEEEEEE-----------------cCCCCEEEEEecC
Confidence 22 222222232 3 344566677777888777899999875 6899999999994
No 197
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=96.41 E-value=0.12 Score=60.19 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcC--CCcEEEecCCC--CCC---------cceEEe
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ--CKTLCVKPARD--GCS---------TGVARL 742 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg--~~PlvVKP~~~--gsS---------~GV~~v 742 (953)
.-+..|++ |+++|||+|++.++.+.+ .+.+..++++ ++|+|+|+.-. |-+ -||..+
T Consensus 31 ~EyqaK~L---L~~~GIpvp~~~va~t~e--------ea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~ 99 (422)
T PLN00124 31 HEYQGAEL---MSKYGVNVPKGAAASSLD--------EVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIV 99 (422)
T ss_pred CHHHHHHH---HHHcCCCCCCceeeCCHH--------HHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEEC
Confidence 46677887 999999999998887643 2334455664 48999999843 222 346566
Q ss_pred CCcccHHH
Q 002207 743 CCAEDLTV 750 (953)
Q Consensus 743 ~~~~eL~~ 750 (953)
++ +++.+
T Consensus 100 ~~-eea~~ 106 (422)
T PLN00124 100 KK-DKAEE 106 (422)
T ss_pred CH-HHHHH
Confidence 55 55554
No 198
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=96.38 E-value=0.011 Score=62.88 Aligned_cols=99 Identities=17% Similarity=0.058 Sum_probs=54.7
Q ss_pred hccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCC-----ceeEEE-eCCHHHHHH
Q 002207 203 AFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS-----SIGVTV-AYGVIDSLK 276 (953)
Q Consensus 203 ~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gs-----S~GV~~-v~~~~el~~ 276 (953)
..+-..++.+|..+|||+|++..+.+.++.. ..++ .++||+++|-....- --||.. +++.+++.+
T Consensus 9 ~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~----~~a~-----~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~ 79 (222)
T PF13549_consen 9 WLTEAEAKELLAAYGIPVPPTRLVTSAEEAV----AAAE-----EIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVRE 79 (222)
T ss_dssp EE-HHHHHHHHHTTT------EEESSHHHHH----HHHH-----HH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHH
T ss_pred ccCHHHHHHHHHHcCcCCCCeeEeCCHHHHH----HHHH-----HhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHH
Confidence 3466788999999999999999988765322 2222 268899999976431 125555 677777665
Q ss_pred HHHHhHhc-------CCCCcEEEeccCC-CCeEEEEEEEEeC
Q 002207 277 KAKGIILE-------GIDDRVVVELFLE-GGSEFTAIVLDVG 310 (953)
Q Consensus 277 ~a~~~~~~-------~~~~~vlVEefI~-Gg~E~tv~Vl~~~ 310 (953)
+..++... .....++||+.+. +|.|+.+++..|.
T Consensus 80 a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp 121 (222)
T PF13549_consen 80 AFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDP 121 (222)
T ss_dssp HHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEET
T ss_pred HHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECC
Confidence 55444321 1235799999998 5699999999864
No 199
>PLN02235 ATP citrate (pro-S)-lyase
Probab=96.07 E-value=0.17 Score=58.39 Aligned_cols=93 Identities=24% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHC-----CCCccCeEEE-eCccccCCchhhHHHHHHhh---cCCCcEEEecCCCCCC----cceEEeCC
Q 002207 678 VATSLALNHLADL-----GVLTINKDVR-RKEDLLKTPIVDIWHELTSK---LQCKTLCVKPARDGCS----TGVARLCC 744 (953)
Q Consensus 678 ~~tk~~~~~l~~~-----GIptp~~~~v-~~~~~~~~~~~~~~~~~~~~---lg~~PlvVKP~~~gsS----~GV~~v~~ 744 (953)
+..|++ |+++ |||+|...+. .+.+ .+.++.++ |+.-++||||--..++ -||.++++
T Consensus 9 yqaK~l---l~~~~~~~~gipvP~~~v~~~~~e--------e~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s 77 (423)
T PLN02235 9 YDSKRL---LKEHLKRLAGIDLPIRSAQVTEST--------DFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLD 77 (423)
T ss_pred HHHHHH---HHHhhcccCCCCCCCCeeccCCHH--------HHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCC
Confidence 455676 7887 9999999877 5432 23344444 6433579999754333 46888988
Q ss_pred cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 745 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 745 ~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
.+|..+ +.++.+... +-. ++ +...-..+|||++++-+
T Consensus 78 ~~Ea~~---~a~~~Lg~~----l~t-~g----~~G~v~~vLVEe~v~i~ 114 (423)
T PLN02235 78 LAQVAT---FVKERLGKE----VEM-GG----CKGPITTFIVEPFVPHD 114 (423)
T ss_pred HHHHHH---HHHHHhCCc----eEe-cC----CCccEeEEEEEecCCCc
Confidence 888775 334433210 000 00 00023679999999764
No 200
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=96.04 E-value=0.011 Score=55.84 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=64.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc---cccccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES---LAQGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 154 (953)
+||+|+..|.- |.++++++++.|++++.++-+++-....... +|- .+..+ ....+....
T Consensus 3 kkvLIanrGei---------a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~--------ad~-~~~~~~~~~~~~yl~~e 64 (110)
T PF00289_consen 3 KKVLIANRGEI---------AVRIIRALRELGIETVAVNSNPDTVSTHVDM--------ADE-AYFEPPGPSPESYLNIE 64 (110)
T ss_dssp SEEEESS-HHH---------HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHH--------SSE-EEEEESSSGGGTTTSHH
T ss_pred CEEEEECCCHH---------HHHHHHHHHHhCCcceeccCchhcccccccc--------ccc-ceecCcchhhhhhccHH
Confidence 58999886654 8899999999999999998766532111100 010 01111 011111222
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHH
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRAC 200 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~ 200 (953)
.+.+. ....+|.+||.. |...|+..+...++..||.|+|+++.++
T Consensus 65 ~I~~ia~~~g~~~i~pGy-g~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 65 AIIDIARKEGADAIHPGY-GFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp HHHHHHHHTTESEEESTS-STTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred HHhhHhhhhcCccccccc-chhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 22221 234799999884 6677999999999999999999998763
No 201
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=95.84 E-value=0.033 Score=58.38 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCC----CcceEEeCCcccHHHHH
Q 002207 677 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC----STGVARLCCAEDLTVYV 752 (953)
Q Consensus 677 K~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gs----S~GV~~v~~~~eL~~~~ 752 (953)
-+..|++ |+++|||+|++.++++.+ .+.++...++..++||||--..+ .-||.++++.++..++
T Consensus 4 EyqaK~l---l~~~gi~vp~g~~a~s~e--------ea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~- 71 (202)
T PF08442_consen 4 EYQAKEL---LRKYGIPVPRGVVATSPE--------EAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEA- 71 (202)
T ss_dssp HHHHHHH---HHCTT----SEEEESSHH--------HHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHH-
T ss_pred HHHHHHH---HHHcCCCCCCeeecCCHH--------HHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHH-
Confidence 3567777 999999999999987643 23445567755578999953322 3478899888876642
Q ss_pred HHHHHHHhhCCCCCcc-cccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 753 KALEECLLRIPPNSFS-RAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 753 ~al~~a~~~~~~~~~~-~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
.++.+.. .+. +..+.-.. .-..++|||+++-+ +|+=++++-++
T Consensus 72 --a~~mlg~----~l~T~Qtg~~G~---~v~~vlvee~v~~~------------------------~E~Ylsi~~DR 115 (202)
T PF08442_consen 72 --AKEMLGK----TLKTKQTGPKGE---KVNKVLVEEFVDIK------------------------REYYLSITLDR 115 (202)
T ss_dssp --HHTTTTS----EEE-TTSTTTEE---EE--EEEEE---CC------------------------EEEEEEEEEET
T ss_pred --HHHHhCC----ceEeeecCCCCC---EeeEEEEEecCccC------------------------ceEEEEEEecc
Confidence 2222211 000 00110000 13678999999865 58888877654
No 202
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.076 Score=61.10 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHHHHH----------------cCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCC
Q 002207 870 STEALDKCKQRIELIANA----------------LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 933 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~a----------------Lg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~ 933 (953)
++.+-.+|+.++.+.+.+ .-|.-+.|+|+++|+ +=+++++|||--|.+...+ +..+.
T Consensus 439 t~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDe-dLkpwLlEVNISPSLhS~t--pld~~---- 511 (662)
T KOG2156|consen 439 TDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDE-DLKPWLLEVNISPSLHSET--PLDCS---- 511 (662)
T ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEecC-ccceeeEEEecccccccCC--Cccch----
Confidence 345667777777766622 124557899999995 6789999999988886542 22221
Q ss_pred CCCHHHHHHHHHHHHh
Q 002207 934 PMYPHQFFRKVLDLGS 949 (953)
Q Consensus 934 ~~yp~~l~~~li~~a~ 949 (953)
.+ ..|+...+.+|.
T Consensus 512 -vk-~~li~~vlNlag 525 (662)
T KOG2156|consen 512 -VK-APLIQDVLNLAG 525 (662)
T ss_pred -hh-hHHHHHHHHhcc
Confidence 12 355665665554
No 203
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=93.85 E-value=0.49 Score=46.06 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=38.2
Q ss_pred cEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 251 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 251 PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
|+||||....-..--.+....+++.... ....+..+++.+.+.=..|+++-|++
T Consensus 3 ~~FiKP~~~~K~F~g~V~~~~~dl~~~~----~~~~~~~V~vSe~v~~~~E~R~fi~~ 56 (130)
T PF14243_consen 3 PVFIKPPDDDKSFTGRVFRSGEDLIGFG----SLDPDTPVLVSEVVEIESEWRCFIVD 56 (130)
T ss_pred CeEeCCCCCCCcceeEEEcchhhccccC----CCCCCceEEEeceEeeeeeEEEEEEC
Confidence 8999999966655555566566544211 11356789999999755999999994
No 204
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.22 Score=57.54 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHHHH----------------hCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCC
Q 002207 363 PIVVINSIREGASLLFQR----------------LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 426 (953)
Q Consensus 363 ~~~~~~~i~~~a~~~~~a----------------Lg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG 426 (953)
++.+..+|+++..+.+.+ .-|-.+.|+|+++ |+|=.+|++|||-.|.
T Consensus 439 t~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiil-----------------DedLkpwLlEVNISPS 501 (662)
T KOG2156|consen 439 TDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIIL-----------------DEDLKPWLLEVNISPS 501 (662)
T ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEe-----------------cCccceeeEEEecccc
Confidence 455677788888877654 2355678999886 6777899999999998
Q ss_pred CCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 427 MEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 427 ~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
+.. -+|..+.. ...|+..++..|.=+.+
T Consensus 502 LhS--~tpld~~v----k~~li~~vlNlagi~~p 529 (662)
T KOG2156|consen 502 LHS--ETPLDCSV----KAPLIQDVLNLAGIKVP 529 (662)
T ss_pred ccc--CCCccchh----hhHHHHHHHHhcceecC
Confidence 754 35544332 23567777777666654
No 205
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=91.88 E-value=1.9 Score=52.23 Aligned_cols=214 Identities=13% Similarity=0.060 Sum_probs=120.0
Q ss_pred CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhh
Q 002207 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVT 242 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~ 242 (953)
-+|+.+-...-+|..|-.+ ++ -.+.-||+-++..---+-.|+.....+|+..||++|++.+++++..+ ..+...++.
T Consensus 90 ~CdcLIsFhSsGFPLdKAi-aY-~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn-~~~~~lie~ 166 (1018)
T KOG1057|consen 90 LCDCLISFHSKGFPLDKAV-AY-AKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPN-PKLCNLIEG 166 (1018)
T ss_pred ccceEEEeccCCCChHHHH-HH-HHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCC-hHHhhhhcC
Confidence 3676665554455544333 34 34567999999999999999999999999999999998888765322 112222211
Q ss_pred cCC-----CCCCCcEEEeeCCCCC-ceeEEEeCC----HHHHHHHHHHhHh-------cCCCCcEEEeccCC-CCeEEEE
Q 002207 243 NKL-----DPNSGKVVVKPTRAGS-SIGVTVAYG----VIDSLKKAKGIIL-------EGIDDRVVVELFLE-GGSEFTA 304 (953)
Q Consensus 243 ~~l-----~~~~~PvvVKP~~~gs-S~GV~~v~~----~~el~~~a~~~~~-------~~~~~~vlVEefI~-Gg~E~tv 304 (953)
... +-+.-|+|=||.++-- ++=|..-.+ -..+..++...-+ -+....++-|+|++ +|.++-|
T Consensus 167 eD~vEVnGevf~KPFVEKPVs~EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKv 246 (1018)
T KOG1057|consen 167 EDHVEVNGEVFQKPFVEKPVSAEDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKV 246 (1018)
T ss_pred CCeEEEcceeccCCcccCCCCcccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceE
Confidence 100 1123389999986532 222222111 1233333321100 01235789999993 2377766
Q ss_pred EEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 002207 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLC 384 (953)
Q Consensus 305 ~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~ 384 (953)
-.++-... ..+..-.+. .|-...-.+.+ .....|.-++++. +++|.+++-|++=.
T Consensus 247 YTVGp~Ya-HAEaRKSPv-------------------vDGkV~Rns~G-KEvRYpv~Ls~~E----K~iA~KVciAF~Q~ 301 (1018)
T KOG1057|consen 247 YTVGPDYA-HAEARKSPV-------------------VDGKVERNSDG-KEVRYPVILNSSE----KQIARKVCIAFKQT 301 (1018)
T ss_pred EeeCcchh-hhhhccCcc-------------------ccceeeecCCC-ceeeceeecChhh----HHHHhHHHhhcccc
Confidence 66642110 000000111 11000001111 2344566677776 67888888888843
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecC
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~ 423 (953)
++.+|.. ..+|.=||++||.
T Consensus 302 -VCGFDLL------------------Ra~G~SYVcDVNG 321 (1018)
T KOG1057|consen 302 -VCGFDLL------------------RANGKSYVCDVNG 321 (1018)
T ss_pred -ccchHHh------------------hcCCceEEEeccc
Confidence 7778863 4679999999993
No 206
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=91.75 E-value=1.1 Score=52.36 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=59.1
Q ss_pred cCCccEECCCHHHHHHhccHHHHHHHHHHCCCC-------------CCCeEEecCCc--c--chhhhhhhhhhcCCCCCC
Q 002207 187 KYNVPFVGTGSRACRQAFDKYDASLEMSKQGFI-------------TVPSFLLQGSE--V--NESELSNWFVTNKLDPNS 249 (953)
Q Consensus 187 ~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Gip-------------tp~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~ 249 (953)
.-.++.+|| ..+.+..||..++-+....--. +|.+..+.... . ...++...+.. ..
T Consensus 266 ~~av~~vgs--frs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a-----~r 338 (445)
T PF14403_consen 266 DGAVCMVGS--FRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIA-----NR 338 (445)
T ss_pred cCCeEEecc--hhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHh-----ch
Confidence 345777764 6889999999887654332211 34455555410 0 00112111111 12
Q ss_pred CcEEEeeCCCCCceeEEEe--CCHHHHHHHHHHhHhcCCCCcEEEeccCCC
Q 002207 250 GKVVVKPTRAGSSIGVTVA--YGVIDSLKKAKGIILEGIDDRVVVELFLEG 298 (953)
Q Consensus 250 ~PvvVKP~~~gsS~GV~~v--~~~~el~~~a~~~~~~~~~~~vlVEefI~G 298 (953)
--+|+||+.+.+|.||..= .+.++..+.+.+. .+...|+|||+.-
T Consensus 339 ~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a----~~~~yilQe~v~~ 385 (445)
T PF14403_consen 339 DRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEA----AREPYILQEYVRP 385 (445)
T ss_pred hcEEeccccccCCCCeEECCcCCHHHHHHHHHHH----hcCCcEEEEEecC
Confidence 2599999999999999874 3445544444433 2458999999974
No 207
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=89.51 E-value=4.1 Score=39.70 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.0
Q ss_pred eEEEEEEEEcCCCcEEEEeeCCC
Q 002207 893 FSRIDAFVNVDNGEVLIIEVNTV 915 (953)
Q Consensus 893 ~ariDf~v~~~~g~~~viEINt~ 915 (953)
..-+|+-+.. +|+.+|+|+|..
T Consensus 94 ~~vlDvg~~~-~G~~~lVE~N~~ 115 (130)
T PF14243_consen 94 AYVLDVGVTD-DGGWALVEANDG 115 (130)
T ss_pred eEEEEEEEeC-CCCEEEEEecCc
Confidence 4459998885 789999999963
No 208
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=2.7 Score=49.84 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=37.4
Q ss_pred CCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 723 CKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 723 ~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
....||||+...-+.||..+++.+++.. +...+.- +.....++.++|..||+-.
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~----~~~~~~~-------------~~s~~~~~~~vv~~yi~~p 252 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQA----IVDSFDS-------------FISENNDEGYVVSAYIDRP 252 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhh----hhhcccc-------------cccccccccceeeeeccCc
Confidence 4679999999999999999998888763 3222110 1112235778888888754
No 209
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.22 E-value=3.1 Score=49.29 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=36.4
Q ss_pred CCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh---HhcCCCCcEEEeccCC
Q 002207 249 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI---ILEGIDDRVVVELFLE 297 (953)
Q Consensus 249 ~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~---~~~~~~~~vlVEefI~ 297 (953)
...+||||+...-+.||..+++.+++....... .....+...+|..||+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~ 250 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYID 250 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeecc
Confidence 458999999999999999999999876554310 1122356778888885
No 210
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=86.81 E-value=17 Score=41.22 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=45.0
Q ss_pred EEEeeCCCCCceeEEEeCCHHHHHHHHHH---hHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceE
Q 002207 252 VVVKPTRAGSSIGVTVAYGVIDSLKKAKG---IILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTE 324 (953)
Q Consensus 252 vvVKP~~~gsS~GV~~v~~~~el~~~a~~---~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~e 324 (953)
||||...|..+.||..|++.+|....-++ -++. ..-.+|||||-|. |...++ +...+|++...+.
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~-----T~E~~~---~avAEPVVYmid~ 331 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY-----TFEMFN---EAVAEPVVYMIGR 331 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc-----eeeeeC---CcccCceEEEECC
Confidence 99999999999999999999987653332 1211 1235899999886 333443 2345677766654
Q ss_pred EE
Q 002207 325 VE 326 (953)
Q Consensus 325 i~ 326 (953)
..
T Consensus 332 ~v 333 (403)
T TIGR02049 332 TV 333 (403)
T ss_pred EE
Confidence 44
No 211
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=85.15 E-value=6.6 Score=36.42 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=26.2
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHH
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i 202 (953)
..++|+|++.-.-.. -..+...|+..|||..|++..++.+
T Consensus 60 ~~~idlvvvGPE~pL--~~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 60 ENKIDLVVVGPEAPL--VAGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp HTTESEEEESSHHHH--HTTHHHHHHHTT-CEES--HHHHHH
T ss_pred HcCCCEEEECChHHH--HHHHHHHHHHCCCcEECcCHHHHhc
Confidence 458999998642100 0137789999999999999887765
No 212
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=82.67 E-value=8.5 Score=46.98 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHH---------hhc
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT---------SKL 721 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~---------~~l 721 (953)
..+++.+ +.-||+-.+..-..+..|.-...++ |+..||++|++..+++... + .+....+. +-+
T Consensus 106 KAiaY~k-LRnPFviNdL~mQyll~DRR~Vy~i---Le~~gI~~PRya~~nr~~p-n---~~~~~lie~eD~vEVnGevf 177 (1018)
T KOG1057|consen 106 KAVAYAK-LRNPFVINDLDMQYLLQDRREVYSI---LEAEGIPLPRYAILNRDPP-N---PKLCNLIEGEDHVEVNGEVF 177 (1018)
T ss_pred HHHHHHH-hcCCeeeccccHHHHHHHHHHHHHH---HHHcCCCCceeEeecCCCC-C---hHHhhhhcCCCeEEEcceec
Confidence 5666655 4468998888888888898888777 9999999999888876432 1 11111111 124
Q ss_pred CCCcEEEecCCC
Q 002207 722 QCKTLCVKPARD 733 (953)
Q Consensus 722 g~~PlvVKP~~~ 733 (953)
..|+|=||.++
T Consensus 178 -~KPFVEKPVs~ 188 (1018)
T KOG1057|consen 178 -QKPFVEKPVSA 188 (1018)
T ss_pred -cCCcccCCCCc
Confidence 47999999864
No 213
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=81.24 E-value=5 Score=47.08 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=60.1
Q ss_pred CCCEeCCChHHHHHhcChHHHHHHHHHHHHCCC-----------CccCeEEEeCccccCC-chhhHHHHHHhhcCCCcEE
Q 002207 660 GVPYTGPGVMASKTCMDKVATSLALNHLADLGV-----------LTINKDVRRKEDLLKT-PIVDIWHELTSKLQCKTLC 727 (953)
Q Consensus 660 gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GI-----------ptp~~~~v~~~~~~~~-~~~~~~~~~~~~lg~~Plv 727 (953)
.++.+|| ..+.+.-||..++-+-.. +...+ .+|-+..+..+...-. ...+..+.+.+. .--+|
T Consensus 268 av~~vgs--frs~l~hnK~iFaiL~d~-~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~--r~~lV 342 (445)
T PF14403_consen 268 AVCMVGS--FRSQLLHNKIIFAILHDE-RTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIAN--RDRLV 342 (445)
T ss_pred CeEEecc--hhhhhhhhhHHHHHhcCh-hhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhc--hhcEE
Confidence 4666654 567777788777654111 11111 2555666655211100 012223333222 24689
Q ss_pred EecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 728 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
+||.++.+|.||..=...+. ++..++|+++. .+++|+|||+.-.
T Consensus 343 LKP~D~Ygg~GV~~G~e~~~-eeW~~~l~~a~---------------------~~~yilQe~v~~~ 386 (445)
T PF14403_consen 343 LKPNDEYGGKGVYIGWETSP-EEWEAALEEAA---------------------REPYILQEYVRPP 386 (445)
T ss_pred eccccccCCCCeEECCcCCH-HHHHHHHHHHh---------------------cCCcEEEEEecCC
Confidence 99999999999996333222 22335777764 4689999999865
No 214
>PRK05849 hypothetical protein; Provisional
Probab=80.54 E-value=1.7e+02 Score=37.22 Aligned_cols=192 Identities=16% Similarity=0.234 Sum_probs=101.7
Q ss_pred cChHHHHHHHHHHHH--CCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC------CCCcceE--EeCC
Q 002207 675 MDKVATSLALNHLAD--LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD------GCSTGVA--RLCC 744 (953)
Q Consensus 675 ~DK~~tk~~~~~l~~--~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~------gsS~GV~--~v~~ 744 (953)
.-|..+-.. |+. .|.++|+.+++...+|.. +....++.+...++..|++|+.+.- .|..|.+ .++-
T Consensus 9 ~~KA~tL~~---L~~~~~~~~i~~~~v~~~~e~~~-~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV 84 (783)
T PRK05849 9 QTKAETLAN---LQPILKKAKILPLLLFSVREWLS-NKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNV 84 (783)
T ss_pred chHHHHHHH---HHhhhcCCCCCCeEEeCHHhhcc-CHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecC
Confidence 356666444 777 899999999998877654 3344556666665457999998742 2334543 2221
Q ss_pred -cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEE
Q 002207 745 -AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVG 823 (953)
Q Consensus 745 -~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~ 823 (953)
.++.+++.+|++..++-... .++..|+||+.|.+... . | +=||..
T Consensus 85 ~~~~~~~L~~AI~~V~aS~~~--------------~~~~aVlVQ~MV~~~~~-----------S-----G----V~FTrd 130 (783)
T PRK05849 85 NADSKDQLLKAIEKVIASYGT--------------SKDDEILVQPMLEDIVL-----------S-----G----VAMSRD 130 (783)
T ss_pred CCCcHHHHHHHHHHHHHhhCC--------------CCCCeEEEEeCccCCCc-----------e-----E----EEEECC
Confidence 12223455677777653100 12467999999974210 0 0 111111
Q ss_pred EEcCCCCceeeCceEEEecCCccccccccccCCCc---eeEcC-CCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q 002207 824 VIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG---INLTP-PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAF 899 (953)
Q Consensus 824 vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~---~~~~P-~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~ 899 (953)
-....... + ++....+ .-+...+|.. ..+.. .....++++..+++.+.++++-+.+|.. ..-|+|-
T Consensus 131 P~tg~~~~--~---iey~~~G----~ge~VVsG~~t~~~~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg~d-pqDIEfa 200 (783)
T PRK05849 131 PESGAPYY--V---INYDESG----STDSVTSGSGGSATTVYHYRDALVFKPPRLKKLIELIRELEALFGCD-FLDIEFA 200 (783)
T ss_pred CCCCCCce--E---EEEcCCC----CCcceecccCCCCceeeeccccccCCHHHHHHHHHHHHHHHHHcCCC-CeeeEEE
Confidence 00000000 0 0000000 0000000100 00000 0001256788899999999988888764 6679999
Q ss_pred EEcCCCcEEEEeeCCC
Q 002207 900 VNVDNGEVLIIEVNTV 915 (953)
Q Consensus 900 v~~~~g~~~viEINt~ 915 (953)
++. +|++|++-+-++
T Consensus 201 id~-~g~L~lLQ~RPi 215 (783)
T PRK05849 201 IDE-KEELYILQVRPI 215 (783)
T ss_pred Ecc-CCEEEEEEccCC
Confidence 964 699999887654
No 215
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=71.07 E-value=69 Score=32.95 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=51.8
Q ss_pred EcCCCCCHHHHHHHHHHHHHHHHHh------CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCC-CCCC
Q 002207 357 HTPPRFPIVVINSIREGASLLFQRL------GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS-GMEQ 429 (953)
Q Consensus 357 ~~Pa~l~~~~~~~i~~~a~~~~~aL------g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~P-G~t~ 429 (953)
+.|+.+-+.+..++-+++.+..++. |+-|....+.++ |+|.++++.|+.++- |-|.
T Consensus 85 n~p~vlRESLL~~vfe~ge~fV~a~k~l~~PG~iGPFcLq~iv-----------------t~dle~vvfevS~RI~gGTN 147 (188)
T PF06973_consen 85 NIPAVLRESLLPKVFEMGERFVEASKELVPPGMIGPFCLQSIV-----------------TDDLEFVVFEVSARIVGGTN 147 (188)
T ss_dssp EEEEEE-GGGHHHHHHHHHHHHHHHHHHSTT---EEEEEEEEE------------------TTSSEEEEEEESSB-GGGG
T ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHhcCCCccccceEEEEE-----------------cCCceEEEEEEeccccCCCC
Confidence 4677777777777777777666653 678899999886 678899999998743 3222
Q ss_pred ----cchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 430 ----TSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 430 ----~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
.|-|..+.....+|...=+.+=|+.|++.
T Consensus 148 ~~~~GspYS~l~~~~pms~GrRIA~EIk~A~e~ 180 (188)
T PF06973_consen 148 VYMGGSPYSKLYWGEPMSMGRRIAREIKEAIEE 180 (188)
T ss_dssp GGTT--CCHHHTTSS---HHHHHHHHHHHHHHT
T ss_pred CccCCCCchHHHcCCCcchhHHHHHHHHHHHHc
Confidence 35555544445566666666667777665
No 216
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=68.59 E-value=15 Score=33.75 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=47.7
Q ss_pred cCeEEEEecC-CCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 77 VLRVGLICGG-PSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 77 ~~kV~vl~GG-~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
.+||+|+||+ -|+ |+. +..+-+.+++.|+++...-.+. .+
T Consensus 3 ~~~ILl~C~~G~sS----S~l-~~k~~~~~~~~gi~~~v~a~~~----------------------------------~~ 43 (95)
T TIGR00853 3 ETNILLLCAAGMST----SLL-VNKMNKAAEEYGVPVKIAAGSY----------------------------------GA 43 (95)
T ss_pred ccEEEEECCCchhH----HHH-HHHHHHHHHHCCCcEEEEEecH----------------------------------HH
Confidence 3689999985 443 333 4677788888888764321100 00
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHH
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~ 198 (953)
+.. ....+|+|+..-+=.+ +-..+++.++..|+|+.-=++.
T Consensus 44 ~~~-~~~~~Dvill~pqi~~-~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 44 AGE-KLDDADVVLLAPQVAY-MLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHh-hcCCCCEEEECchHHH-HHHHHHHHhhhcCCCEEEeChh
Confidence 101 1236788888765333 3445777788888887654433
No 217
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=65.15 E-value=26 Score=36.14 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=26.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
|||+||+.-- +-|..+++.+.+.||+|+.|.-++
T Consensus 1 mKIaiIgAsG--------~~Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASG--------KAGSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCc--------hhHHHHHHHHHhCCCeeEEEEeCh
Confidence 6999997422 238888999999999999876433
No 218
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=64.12 E-value=31 Score=32.74 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=49.2
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecc--cccccCCCCCccccccccccccCcchhH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISS--AQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
+|+|+.-....++ -|..+++.|.+.||+|++++. .+....-.+ ..+.. .+...+...--.. .....+.
T Consensus 2 siAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~~Vnp--~~~~i~G~~~y~sl~e-~p~~iDlavv~~~--~~~~~~~ 71 (116)
T PF13380_consen 2 SIAVVGASDNPGK-----FGYRVLRNLKAAGYEVYPVNP--KGGEILGIKCYPSLAE-IPEPIDLAVVCVP--PDKVPEI 71 (116)
T ss_dssp EEEEET--SSTTS-----HHHHHHHHHHHTT-EEEEEST--TCSEETTEE-BSSGGG-CSST-SEEEE-S---HHHHHHH
T ss_pred EEEEEcccCCCCC-----hHHHHHHHHHhCCCEEEEECC--CceEECcEEeeccccC-CCCCCCEEEEEcC--HHHHHHH
Confidence 6788754433322 288999999999999998753 322211000 00110 1222221000000 0001111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHH
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSR 198 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~ 198 (953)
.+. ....+..|+...+ .++-.++++++..|++++|++-.
T Consensus 72 v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 72 VDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp HHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS-H
T ss_pred HHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCCcc
Confidence 111 2235666666655 55677889999999999987644
No 219
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=60.80 E-value=17 Score=34.87 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCC-CCccccccccccccCcchhHHHhhccCcCEEEEcCCCCC
Q 002207 97 SARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTP-ADFDFKLESLAQGFGSLSEFAEHLAANVDIVFPTIHGRF 175 (953)
Q Consensus 97 Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~ 175 (953)
||.+|++-.+.+|+....+- ..|+. ..|...+ .|--..++.... +. .....+.+.. -+ ++.+-||.+
T Consensus 8 SALqIl~GAk~EGFrT~~ic--~~~r~------~~Y~~f~~iDe~i~~d~f~d-i~-~~~~q~~L~~-~N-~I~VPhgSf 75 (124)
T PF06849_consen 8 SALQILDGAKDEGFRTIAIC--QKGRE------KFYRRFPFIDEVIVLDSFSD-IL-SEEVQEKLRE-MN-AIFVPHGSF 75 (124)
T ss_dssp THHHHHHHHHHTT--EEEEE--ETTCH------HHHHTTTT-SEEEEESSCGH-CC-SHHHHHHHHH-TT-EEE--BTTH
T ss_pred HHHHHhhhHHHcCCcEEEEE--CCCCc------chhhhcCcCcEEEEeCCHHH-HH-hHHHHHHHHH-CC-eEEecCCCe
Confidence 69999999999999987653 22221 1111111 010000010000 00 0112222221 22 445568887
Q ss_pred CCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE
Q 002207 176 GEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF 224 (953)
Q Consensus 176 GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~ 224 (953)
-+--++..+-..+.+|+.|+... .+--.|...-+.+|.++|||+|..+
T Consensus 76 v~Y~G~d~ie~~~~vP~FGNR~l-LrwEseR~~~~~lL~~AgI~~P~~~ 123 (124)
T PF06849_consen 76 VAYVGYDRIENEFKVPIFGNRNL-LRWESERDKERNLLEKAGIPMPRKF 123 (124)
T ss_dssp HHHH-HHHHHHT-SS-EES-CCG-GHCCCSHHHHHHHHHHTT-BB--BE
T ss_pred eEeecHHHHhhcCCCCeecChHH-HHhhhhhhhHHHHHHHcCCCCCccC
Confidence 76666666666699999998633 3333478888889999999999753
No 220
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=59.79 E-value=21 Score=38.74 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
++|+ |+||.+. |+.+++.|.+.|+.++....+.
T Consensus 3 ~~Il-vlgGT~e--------gr~la~~L~~~g~~v~~Svat~ 35 (248)
T PRK08057 3 PRIL-LLGGTSE--------ARALARALAAAGVDIVLSLAGR 35 (248)
T ss_pred ceEE-EEechHH--------HHHHHHHHHhCCCeEEEEEccC
Confidence 3554 5568876 9999999999999887554444
No 221
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=59.30 E-value=20 Score=39.08 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=24.3
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN 120 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~ 120 (953)
|||.|+ ||.+. |+.+++.|.+.||+|+....+..
T Consensus 1 m~ILvl-GGT~e--------gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 1 MTVLLM-GGTVD--------SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred CeEEEE-echHH--------HHHHHHHHHhCCCeEEEEEccCC
Confidence 466555 56553 88899999999999986554443
No 222
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=54.31 E-value=43 Score=37.69 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=40.4
Q ss_pred CCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 723 CKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 723 ~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
.-|+=+||..+.++.|-.++.+.++|+...+++....-. ...+++|+-++..
T Consensus 136 ~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~-------------------~~GlVLE~~L~~~ 187 (355)
T PF11379_consen 136 DGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA-------------------RHGLVLEEDLEEV 187 (355)
T ss_pred cCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH-------------------hCCEEEecccCCC
Confidence 459999999999999999999999998755555443221 3568999998764
No 223
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=52.44 E-value=31 Score=37.50 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=68.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
|||+| +||.+. |+.+++.|.+.|+ |..-.++.-|.-. .
T Consensus 1 m~ILv-lgGTtE--------~r~la~~L~~~g~-v~~sv~t~~g~~~-------~------------------------- 38 (249)
T PF02571_consen 1 MKILV-LGGTTE--------GRKLAERLAEAGY-VIVSVATSYGGEL-------L------------------------- 38 (249)
T ss_pred CEEEE-EechHH--------HHHHHHHHHhcCC-EEEEEEhhhhHhh-------h-------------------------
Confidence 46655 567876 9999999999999 5533332221100 0
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEEC--CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG--TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvG--s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
...+.-..+..|.+|--..+..+|...+|..+- +-+.|..+. +. ..+..++.||| ++.+.+..+.
T Consensus 39 ----~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is--~n-a~~a~~~~~ip---ylR~eRp~~~--- 105 (249)
T PF02571_consen 39 ----KPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEIS--QN-AIEACRELGIP---YLRFERPSWQ--- 105 (249)
T ss_pred ----ccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHH--HH-HHHHHhhcCcc---eEEEEcCCcc---
Confidence 001112234455554333456666666665443 344455553 22 34567888885 4445443210
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHH
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKG 280 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~ 280 (953)
..| +-.+..|.+.+|+.+.+.+
T Consensus 106 -------------~~~----------~~~~~~v~~~~eA~~~l~~ 127 (249)
T PF02571_consen 106 -------------PEP----------DDNWHYVDSYEEAAELLKE 127 (249)
T ss_pred -------------cCC----------CCeEEEeCCHHHHHHHHhh
Confidence 001 2337788999998877743
No 224
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=50.52 E-value=19 Score=33.95 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=33.4
Q ss_pred cChHHHHHHh-hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHH
Q 002207 622 HSINEWIKLA-KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 670 (953)
Q Consensus 622 ~~~~~~~~~~-~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~a 670 (953)
++.+..++.+ ++..|.+||- .|...|+-.+...++..||.++|+++.+
T Consensus 61 l~~e~I~~ia~~~g~~~i~pG-yg~lse~~~fa~~~~~~gi~fiGp~~~~ 109 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADAIHPG-YGFLSENAEFAEACEDAGIIFIGPSPEA 109 (110)
T ss_dssp TSHHHHHHHHHHTTESEEEST-SSTTTTHHHHHHHHHHTT-EESSS-HHH
T ss_pred ccHHHHhhHhhhhcCcccccc-cchhHHHHHHHHHHHHCCCEEECcChHh
Confidence 3445555553 3566776665 3666689999999999999999999875
No 225
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=49.92 E-value=60 Score=36.31 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH-HHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 871 TEALDKCKQRI-ELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 871 ~~~~~~i~~~a-~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+++.+.|.+.. ..+...+....|. +|+.++.+.++++++|+|+.-+-|.
T Consensus 194 ~~I~~~I~~F~~~~I~~~~~~~~~v-~DVyi~~~~~~v~LID~NPf~~~Td 243 (299)
T PF07065_consen 194 EEIRSKIQEFFEEHIKPKFPLDNYV-FDVYITRDKDKVWLIDFNPFGPRTD 243 (299)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEE-EEEEEcCCCCeEEEEEecCCcccCc
Confidence 44555555555 3445667777776 9999986447999999999777553
No 226
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=49.78 E-value=50 Score=37.72 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=28.3
Q ss_pred EEEeeCCCCCceeEEEeCCHHHHH---HHHHHhHhcC----CCCcEEEeccCC
Q 002207 252 VVVKPTRAGSSIGVTVAYGVIDSL---KKAKGIILEG----IDDRVVVELFLE 297 (953)
Q Consensus 252 vvVKP~~~gsS~GV~~v~~~~el~---~~a~~~~~~~----~~~~vlVEefI~ 297 (953)
||||...|..|.||..|++.+|+. .+.+.-++.. .-++|||||-|.
T Consensus 263 V~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~ 315 (404)
T PF08886_consen 263 VFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVY 315 (404)
T ss_dssp EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE---
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcc
Confidence 899999999999999999988753 3333333211 135899999886
No 227
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=48.78 E-value=52 Score=30.13 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=49.5
Q ss_pred eEEEEec-CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 79 RVGLICG-GPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 79 kV~vl~G-G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
||+++|| |-|+ |+. ++.+-+.+++.|+++...-.+- .++
T Consensus 1 kIl~~Cg~G~sT----S~~-~~ki~~~~~~~~~~~~v~~~~~----------------------------------~~~- 40 (96)
T cd05564 1 KILLVCSAGMST----SIL-VKKMKKAAEKRGIDAEIEAVPE----------------------------------SEL- 40 (96)
T ss_pred CEEEEcCCCchH----HHH-HHHHHHHHHHCCCceEEEEecH----------------------------------HHH-
Confidence 5899998 4554 444 6688888888888754221100 000
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHH
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i 202 (953)
.....++|+|+.+-|=.+ +--.+++.+...++|+.-=++.....
T Consensus 41 ~~~~~~~Diil~~Pqv~~-~~~~i~~~~~~~~~pv~~I~~~~Y~~ 84 (96)
T cd05564 41 EEYIDDADVVLLGPQVRY-MLDEVKKKAAEYGIPVAVIDMMDYGM 84 (96)
T ss_pred HHhcCCCCEEEEChhHHH-HHHHHHHHhccCCCcEEEcChHhccc
Confidence 011236888888766333 23346666677888887666665554
No 228
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=48.25 E-value=81 Score=34.15 Aligned_cols=98 Identities=20% Similarity=0.137 Sum_probs=61.2
Q ss_pred HHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCC--CCCcee---------EEEeCCHHHH
Q 002207 206 KYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR--AGSSIG---------VTVAYGVIDS 274 (953)
Q Consensus 206 K~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~--~gsS~G---------V~~v~~~~el 274 (953)
.+..|.+|+++|+.+-.|++.+....+ ++.| ..++. .-+|||.-- ||-+.| |++-.+.+..
T Consensus 24 EfQSK~~l~k~Gv~vQ~F~Va~n~kea---~E~~-k~f~~----~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~v 95 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRFFVADNAKEA---LEAA-KRFNA----KEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVV 95 (412)
T ss_pred HhhhHHHHHhcCeeEEEEEEecCcHHH---HHHH-HhcCC----cceEEeeeeeecCcccceecCCccceeEEecCHhHH
Confidence 466789999999999888888765432 3332 12111 138999853 444444 4556677777
Q ss_pred HHHHHHhHhcC-----------CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 275 LKKAKGIILEG-----------IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 275 ~~~a~~~~~~~-----------~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
++.+.+++..+ .-+++||-+-++=.||--..++-+..
T Consensus 96 l~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe 143 (412)
T KOG1447|consen 96 LQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRE 143 (412)
T ss_pred HHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccc
Confidence 77776654321 12478888888655786666665443
No 229
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=46.86 E-value=46 Score=38.57 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=67.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCC-CEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDD-LLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g-~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
|||+||.+|.- |+.|+..|.+.+ ++|++.+-+.+. .......... .++...-.......+
T Consensus 2 ~~ilviGaG~V---------g~~va~~la~~~d~~V~iAdRs~~~------~~~i~~~~~~----~v~~~~vD~~d~~al 62 (389)
T COG1748 2 MKILVIGAGGV---------GSVVAHKLAQNGDGEVTIADRSKEK------CARIAELIGG----KVEALQVDAADVDAL 62 (389)
T ss_pred CcEEEECCchh---------HHHHHHHHHhCCCceEEEEeCCHHH------HHHHHhhccc----cceeEEecccChHHH
Confidence 68999987754 788888887776 888866543221 0001000000 001000000001111
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF 224 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~ 224 (953)
.+ +..+.|+|++++.+.... .+-..+-..|++|+-.+...- +.+..+..++++|+-..+..
T Consensus 63 ~~-li~~~d~VIn~~p~~~~~--~i~ka~i~~gv~yvDts~~~~----~~~~~~~~a~~Agit~v~~~ 123 (389)
T COG1748 63 VA-LIKDFDLVINAAPPFVDL--TILKACIKTGVDYVDTSYYEE----PPWKLDEEAKKAGITAVLGC 123 (389)
T ss_pred HH-HHhcCCEEEEeCCchhhH--HHHHHHHHhCCCEEEcccCCc----hhhhhhHHHHHcCeEEEccc
Confidence 22 223669999999876654 566777789999986433222 23667788888887554443
No 230
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.96 E-value=1.3e+02 Score=27.83 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=51.7
Q ss_pred CeEEEEecCC-CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 78 LRVGLICGGP-SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~-S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
+||.|+|||- |+ |+ =+..+-+.+++.|+++...-..- .++
T Consensus 1 ~~Ill~C~~GaSS----s~-la~km~~~a~~~gi~~~i~a~~~----------------------------------~e~ 41 (99)
T cd05565 1 LNVLVLCAGGGTS----GL-LANALNKGAKERGVPLEAAAGAY----------------------------------GSH 41 (99)
T ss_pred CEEEEECCCCCCH----HH-HHHHHHHHHHHCCCcEEEEEeeH----------------------------------HHH
Confidence 4799999754 43 22 27788888889998765321100 001
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHH
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~ 201 (953)
......+|+++..-+-.+-. ..+++.++..|+|+.--+.....
T Consensus 42 -~~~~~~~Dvill~PQv~~~~-~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 42 -YDMIPDYDLVILAPQMASYY-DELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred -HHhccCCCEEEEcChHHHHH-HHHHHHhhhcCCCEEEeCHHHHh
Confidence 11123688888877644432 24788888889998877666555
No 231
>PRK05849 hypothetical protein; Provisional
Probab=44.20 E-value=8e+02 Score=31.41 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=97.1
Q ss_pred hccHHHHHHHHHH--CCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCC------CCceeE--EEe--CC
Q 002207 203 AFDKYDASLEMSK--QGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA------GSSIGV--TVA--YG 270 (953)
Q Consensus 203 ~~DK~~~k~~l~~--~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~------gsS~GV--~~v--~~ 270 (953)
..-|..+-..|+. .|.++|+.+++...++.. ....+++.+.-.-...|++|+.... .|.-|. ++. ..
T Consensus 8 ~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~-~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~ 86 (783)
T PRK05849 8 FQTKAETLANLQPILKKAKILPLLLFSVREWLS-NKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNA 86 (783)
T ss_pred cchHHHHHHHHHhhhcCCCCCCeEEeCHHhhcc-CHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCC
Confidence 3467788888888 999999999887643211 1111221111000234899997642 222343 232 22
Q ss_pred --HHHHHHHHHHhHhc---CCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccc
Q 002207 271 --VIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYR 345 (953)
Q Consensus 271 --~~el~~~a~~~~~~---~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~ 345 (953)
.+++..++...++. ..+..|+||+.|.+ ...+- |+-..+-..+.+..+ ++.... +. ....-+-.
T Consensus 87 ~~~~~L~~AI~~V~aS~~~~~~~aVlVQ~MV~~-~~~SG-V~FTrdP~tg~~~~~--iey~~~--G~-----ge~VVsG~ 155 (783)
T PRK05849 87 DSKDQLLKAIEKVIASYGTSKDDEILVQPMLED-IVLSG-VAMSRDPESGAPYYV--INYDES--GS-----TDSVTSGS 155 (783)
T ss_pred CcHHHHHHHHHHHHHhhCCCCCCeEEEEeCccC-CCceE-EEEECCCCCCCCceE--EEEcCC--CC-----Ccceeccc
Confidence 23666555554432 12357999999973 33222 221111111111100 110000 00 00000000
Q ss_pred cCccCCCceEEE--cCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecC
Q 002207 346 RKYLPTQQVAYH--TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 423 (953)
Q Consensus 346 ~Ky~~~~~~~~~--~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~ 423 (953)
-.+.. .... .+..++++..+++.+.+.++=+.+|.. ..-|+|-+ |++|++|++-+-|
T Consensus 156 --~t~~~-~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg~d-pqDIEfai-----------------d~~g~L~lLQ~RP 214 (783)
T PRK05849 156 --GGSAT-TVYHYRDALVFKPPRLKKLIELIRELEALFGCD-FLDIEFAI-----------------DEKEELYILQVRP 214 (783)
T ss_pred --CCCCc-eeeeccccccCCHHHHHHHHHHHHHHHHHcCCC-CeeeEEEE-----------------ccCCEEEEEEccC
Confidence 00000 0000 134578888999999999998888853 77788876 6789999999775
Q ss_pred C
Q 002207 424 I 424 (953)
Q Consensus 424 ~ 424 (953)
+
T Consensus 215 i 215 (783)
T PRK05849 215 I 215 (783)
T ss_pred C
Confidence 4
No 232
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=43.36 E-value=26 Score=40.28 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=28.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE--EecCCce
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY--IDRNLNA 123 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~--id~~g~~ 123 (953)
|||+||. +|. =|..|+++|+++||+|+.++ .|++|+.
T Consensus 1 mkiaiig--qs~-------fg~~vy~~lrk~gheiv~vftipdk~g~~ 39 (881)
T KOG2452|consen 1 MKIAVIG--QSL-------FGQEVYCHLRKEGHEVVGVFTVPDKDGKA 39 (881)
T ss_pred CeeEEec--hhh-------hhHHHHHHHHhcCceEEEEEEecCCCCCc
Confidence 6899984 332 27889999999999999876 4556653
No 233
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=41.85 E-value=40 Score=35.15 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=36.8
Q ss_pred CcCeEEEEec------CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 76 RVLRVGLICG------GPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 76 ~~~kV~vl~G------G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
...+|+|+.| |.+.|-|-+|..|.-|..+++..|++|..+.|
T Consensus 136 ~ep~VaVlSgGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H~~I 183 (256)
T COG4002 136 IEPKVAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHYGI 183 (256)
T ss_pred CCcceEEecCCcchhccCcchhhhhhhchHHHHHHHhccCceeEEeee
Confidence 3468999998 56899999999999999999999999987654
No 234
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=40.33 E-value=31 Score=35.76 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=34.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCC-CEEEEEEEec
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDD-LLVRCYYIDR 119 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g-~~V~~i~id~ 119 (953)
|||+||.|.+-.+...|-.=++.+++.|++.+ ++|..+++..
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~ 43 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYE 43 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 69999999998877777777899999999999 9998877644
No 235
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=39.61 E-value=21 Score=43.28 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=26.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec--CCcee
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--NLNAY 124 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~--~g~~~ 124 (953)
+||+||.+|.| |-..+++|.++|++|+++.-.. .|.|.
T Consensus 2 krVaVIGaG~s---------GL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPS---------GLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHH---------HHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHH---------HHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 69999999987 6777788888999999886433 25564
No 236
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=39.05 E-value=22 Score=40.89 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=25.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN 120 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~ 120 (953)
|||.|+..|.- |....-.|.+.||+|++++||.+
T Consensus 1 MkI~viGtGYV---------GLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYV---------GLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchH---------HHHHHHHHHHcCCeEEEEeCCHH
Confidence 68999988765 33334456778999999999875
No 237
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=38.95 E-value=43 Score=32.86 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=32.3
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCC
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNL 121 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g 121 (953)
++|||+.-..-++|. +..|.+.|.+.||+|++++....|
T Consensus 17 K~IAvVG~S~~P~r~-----sy~V~kyL~~~GY~ViPVNP~~~~ 55 (140)
T COG1832 17 KTIAVVGASDKPDRP-----SYRVAKYLQQKGYRVIPVNPKLAG 55 (140)
T ss_pred ceEEEEecCCCCCcc-----HHHHHHHHHHCCCEEEeeCcccch
Confidence 589999877778777 889999999999999998753343
No 238
>CHL00194 ycf39 Ycf39; Provisional
Probab=37.37 E-value=1.2e+02 Score=33.81 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=23.3
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
|||+|+.| ... -|++++++|.+.||+|.++.
T Consensus 1 MkIlVtGa-tG~-------iG~~lv~~Ll~~g~~V~~l~ 31 (317)
T CHL00194 1 MSLLVIGA-TGT-------LGRQIVRQALDEGYQVRCLV 31 (317)
T ss_pred CEEEEECC-CcH-------HHHHHHHHHHHCCCeEEEEE
Confidence 47776653 332 39999999999999998764
No 239
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=37.02 E-value=90 Score=29.19 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=48.1
Q ss_pred CeEEEEecC-CCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 78 LRVGLICGG-PSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG-~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
+||+++||+ -|+ |+. +..+-+.+++.|+++...-..- .++
T Consensus 2 kkILlvCg~G~ST----Sll-a~k~k~~~~e~gi~~~i~a~~~----------------------------------~e~ 42 (104)
T PRK09590 2 KKALIICAAGMSS----SMM-AKKTTEYLKEQGKDIEVDAITA----------------------------------TEG 42 (104)
T ss_pred cEEEEECCCchHH----HHH-HHHHHHHHHHCCCceEEEEecH----------------------------------HHH
Confidence 479999985 443 322 6667777888888764321100 001
Q ss_pred HHhh-ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHH
Q 002207 157 AEHL-AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR 201 (953)
Q Consensus 157 ~~~~-~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~ 201 (953)
.... ...+|+|+..-|=.+- -..++..++..|+|+.-=++....
T Consensus 43 ~~~~~~~~~DvIll~PQi~~~-~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 43 EKAIAAAEYDLYLVSPQTKMY-FKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred HHhhccCCCCEEEEChHHHHH-HHHHHHHhhhcCCCEEEeCHHHcC
Confidence 0111 1257888887653332 234677888888888765555443
No 240
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=36.54 E-value=70 Score=36.04 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=45.3
Q ss_pred CCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-CCCcEEEeccCCCCeEEEEEEEEe
Q 002207 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-IDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 248 ~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
..+||=+||..+.++.|-.++.+.+++......+-... ....+++|+-++.-.-++|+-+..
T Consensus 135 ~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~GlVLE~~L~~~~T~SVGqv~v 197 (355)
T PF11379_consen 135 RDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELARHGLVLEEDLEEVVTYSVGQVRV 197 (355)
T ss_pred ccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHHhCCEEEecccCCCceeeEEEEEE
Confidence 35799999999999999999999998765544321100 134689999998656677777753
No 241
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=36.03 E-value=6.4e+02 Score=32.36 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCC
Q 002207 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGME 428 (953)
Q Consensus 361 ~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t 428 (953)
.|+++...+|.+++.++-+.+|+ ..-|+|.+ ++ +|++|++-.-|++-.+
T Consensus 288 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWai-----------------~~~~g~l~ILQaRPit~~~ 337 (795)
T PRK06464 288 SLTDEEVLELAKQAVIIEKHYGR--PMDIEWAK-----------------DGDDGKLYIVQARPETVKS 337 (795)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEE-----------------ECCCCcEEEEEeecccccc
Confidence 38889999999999999999987 56678765 33 5899999988765443
No 242
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=35.77 E-value=20 Score=33.69 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=33.8
Q ss_pred ccccccCCCccccccCCCceEEEEecCCCcccceeccccHHHH
Q 002207 473 PGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNV 515 (953)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~~s~~~v 515 (953)
++|+.+++|...|.|+.|+++.+.+.+|....-|..+.+|..|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v 43 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEV 43 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCc
Confidence 5799999999999999999999888888776555555555433
No 243
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=35.48 E-value=4.1e+02 Score=29.00 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=49.1
Q ss_pred cCCCCCCCchHHHHHHHcCCccEEC--CCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCC
Q 002207 170 TIHGRFGEDGGIQEVLEKYNVPFVG--TGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDP 247 (953)
Q Consensus 170 ~lhG~~GEdg~iq~lle~~gIpyvG--s~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (953)
..+|++|.-..+.++++..+|-.+- +-+.|..++.| +-+.+++.||| ++.+....+.
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~N---a~~aake~gip---y~r~eRP~~~--------------- 105 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQN---AARAAKETGIP---YLRLERPPWA--------------- 105 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHH---HHHHHHHhCCc---EEEEECCccc---------------
Confidence 4566666666677888888875543 56677777544 23477888985 5555554321
Q ss_pred CCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHH
Q 002207 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKG 280 (953)
Q Consensus 248 ~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~ 280 (953)
.+ +-.+..|.+.+|+.+.+.+
T Consensus 106 ------~~------gd~~~~V~d~~ea~~~~~~ 126 (257)
T COG2099 106 ------PN------GDNWIEVADIEEAAEAAKQ 126 (257)
T ss_pred ------cC------CCceEEecCHHHHHHHHhc
Confidence 00 2345578888888776653
No 244
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=34.53 E-value=37 Score=32.65 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=31.9
Q ss_pred EecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE
Q 002207 640 IAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 698 (953)
Q Consensus 640 ~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~ 698 (953)
.+=||.+-+--.+..+-..+.+|+.|+-.+ .+.-.|...-+.+ |.++|||.|..+
T Consensus 69 ~VPhgSfv~Y~G~d~ie~~~~vP~FGNR~l-LrwEseR~~~~~l---L~~AgI~~P~~~ 123 (124)
T PF06849_consen 69 FVPHGSFVAYVGYDRIENEFKVPIFGNRNL-LRWESERDKERNL---LEKAGIPMPRKF 123 (124)
T ss_dssp E--BTTHHHHH-HHHHHHT-SS-EES-CCG-GHCCCSHHHHHHH---HHHTT-BB--BE
T ss_pred EecCCCeeEeecHHHHhhcCCCCeecChHH-HHhhhhhhhHHHH---HHHcCCCCCccC
Confidence 344776655444445545599999998754 5555577777777 999999999753
No 245
>PRK00170 azoreductase; Reviewed
Probab=33.98 E-value=60 Score=33.56 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=34.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcC--CCEEEEEEEe
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGD--DLLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~--g~~V~~i~id 118 (953)
|||++|.|.+..++..|..=++.+++.|++. |++|..+++.
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 6899999999877677777788999999887 8999877764
No 246
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=33.94 E-value=60 Score=31.81 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=31.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
|||++|.|.... ...+..=++.+.+.|.+.|+++..+++.
T Consensus 1 Mkilii~gS~r~-~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPRK-NSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSST-TSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCCC-CCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 699999988763 4556666889999998889999887653
No 247
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=32.92 E-value=41 Score=40.08 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=31.3
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec--CCcee
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR--NLNAY 124 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~--~g~~~ 124 (953)
|...++|+||.||+| |-..+++|.+.|++|+++.-.. .|.|.
T Consensus 7 ~~~~~~VaIIGAG~a---------GL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 7 PINSQHVAVIGAGAA---------GLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCCEEEECCcHH---------HHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 555679999999976 6777788888999998876432 34553
No 248
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=31.72 E-value=81 Score=35.73 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCC-----------CcceEEeCC
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC-----------STGVARLCC 744 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gs-----------S~GV~~v~~ 744 (953)
.-+...++ |++.||.+|+.++..+.+ ...++.++|+..-+|||.-...+ -.||.+|.+
T Consensus 26 hey~~~~l---l~~~Gv~vp~g~vA~spe--------EA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~ 94 (434)
T KOG2799|consen 26 HEYRSAAL---LRKYGINVPLGYVAKSPE--------EAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFS 94 (434)
T ss_pred HHHHHHHH---HHHcCCCCCCCcccCCHH--------HHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeC
Confidence 33444555 899999999998877654 24556778877789999864322 347899998
Q ss_pred cccHHH
Q 002207 745 AEDLTV 750 (953)
Q Consensus 745 ~~eL~~ 750 (953)
++|.+.
T Consensus 95 p~Eak~ 100 (434)
T KOG2799|consen 95 PQEAKA 100 (434)
T ss_pred hHHHHH
Confidence 777653
No 249
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=31.66 E-value=2.2e+02 Score=32.71 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=36.4
Q ss_pred EEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 726 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 726 lvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
+|||...|.-+.||.-|++.+|+.. |....+.-. +...+ ...-..+||||-|.+.
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~----LNrK~RnKM----~~~Ke-----g~~V~~VIiQEGV~T~ 314 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLG----LNRKERNKM----AKVKE-----GLEVSEVIIQEGVYTF 314 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHH----hhhhhhhhc----ccccC-----CCccceEEEecCccee
Confidence 5788888888999999999999874 444332210 00011 1124789999998875
No 250
>PRK06847 hypothetical protein; Provisional
Probab=31.53 E-value=45 Score=38.00 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=27.3
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
|.+.++|+|+.||++ |.....+|.+.|++|.++.
T Consensus 1 m~~~~~V~IVGaG~a---------Gl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 1 MAAVKKVLIVGGGIG---------GLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred CCCcceEEEECCCHH---------HHHHHHHHHhCCCCEEEEe
Confidence 555679999999987 6667777888999987663
No 251
>PRK08163 salicylate hydroxylase; Provisional
Probab=31.41 E-value=47 Score=38.22 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=28.1
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
|.+.++|+|+.||.+ |....-+|.+.|++|.++.
T Consensus 1 ~~~~~~V~IvGaGia---------Gl~~A~~L~~~g~~v~v~E 34 (396)
T PRK08163 1 MTKVTPVLIVGGGIG---------GLAAALALARQGIKVKLLE 34 (396)
T ss_pred CCCCCeEEEECCcHH---------HHHHHHHHHhCCCcEEEEe
Confidence 455679999999986 7777888999999998764
No 252
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=29.82 E-value=93 Score=41.16 Aligned_cols=92 Identities=16% Similarity=0.238 Sum_probs=55.9
Q ss_pred CcCeEEEEecCCCC-chHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcch
Q 002207 76 RVLRVGLICGGPSA-ERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLS 154 (953)
Q Consensus 76 ~~~kV~vl~GG~S~-E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (953)
.+.+|+|||....- ..+ ..--..++++|.+.|++|+++++..+... . . .....
T Consensus 70 ~~P~VgIlfyrs~~~~g~--~~~vdaLI~~LE~~G~nvipvf~~~~~~~-----~----------~----~i~~~----- 123 (1098)
T PF02514_consen 70 NRPTVGILFYRSYWLSGN--TAVVDALIRALEERGLNVIPVFCSSGPDS-----Q----------E----AIEDY----- 123 (1098)
T ss_pred CCCEEEEEeehhhhhcCC--cHHHHHHHHHHHHCCCeEEEEEecCccch-----H----------H----HHHHH-----
Confidence 45799999954321 111 11256889999999999999987541000 0 0 00000
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCc--hHHHHHHHcCCccEEC
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGED--GGIQEVLEKYNVPFVG 194 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEd--g~iq~lle~~gIpyvG 194 (953)
+...-...+|+|++..+...+.. +.-..+|+.+|||++.
T Consensus 124 -f~~~g~~~vDaIIn~~~f~l~~~~~~~~~~~L~~LnVPVlq 164 (1098)
T PF02514_consen 124 -FMDDGKPRVDAIINLTGFSLGGGPAGGAIELLKELNVPVLQ 164 (1098)
T ss_pred -HhhcCCCCceEEEEcCccccCCCCcchhHHHHHHCCCCEEE
Confidence 00001237999999987655432 2367899999999985
No 253
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=28.54 E-value=47 Score=35.46 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=28.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
|+|.|+.+|+- |.++++.|.+.||+|+.++.|.
T Consensus 1 m~iiIiG~G~v---------G~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRV---------GRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHH---------HHHHHHHHHhCCCceEEEEcCH
Confidence 58888888875 8999999999999999886554
No 254
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=28.09 E-value=1.1e+02 Score=34.26 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=54.9
Q ss_pred cEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHH----------------HHHHHHHhhhCCCCCCCCCcceecccc-cc
Q 002207 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNIL----------------RTIIGHACSRFPNLASYNSVSSHLPGR-SS 477 (953)
Q Consensus 415 ~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll----------------~~li~~a~~r~~~~~~~~~~~~~~~~~-~~ 477 (953)
.+.++|...+|. ....-+.|+++|++.+++. .+.++.|+.|..++- ++..+-+.-. ..
T Consensus 134 avl~lE~~~lP~---~~v~e~vA~~cgv~p~~v~~lvapT~SlaGsvqi~aRvvE~a~hKl~elg--fd~~~I~~~~G~a 208 (317)
T PRK02264 134 AVLVLESDKLPP---EEVAEKVAEECGVDPENVYLLVAPTASLAGSVQVSARVVEVALHKLHELG--FDLTKIVSAAGSA 208 (317)
T ss_pred EEEEEecCCCCC---HHHHHHHHHHcCCCHHHEEEEEecCCcceeEEEeehhHHHHHHHHHHHcC--CCHHHheeceecc
Confidence 488999999887 3455667889999988764 778888888854432 3321111000 01
Q ss_pred c-CCCccccccCCCceEEEEecCCCc
Q 002207 478 G-SKPTEALNKREGIREVFVIFGGDT 502 (953)
Q Consensus 478 ~-~~~~~~~~~~~~~~~v~vl~GG~s 502 (953)
. ..+..++.+.|++.+=+++|||+-
T Consensus 209 PiaP~~~d~~~aMGrTNDaiiYgG~v 234 (317)
T PRK02264 209 PIAPVAPDDLKAMGRTNDAILYGGRV 234 (317)
T ss_pred CCCCCCCchhhhhccccceEEECcEE
Confidence 1 122356778899999999999964
No 255
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=28.03 E-value=30 Score=32.53 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=35.3
Q ss_pred ccccccCCCccccccCCCceEEEEecCCCcccceeccccHHHH
Q 002207 473 PGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNV 515 (953)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~~s~~~v 515 (953)
++|+++++|...|.|++|++..+-..+|....-|-.+.+|..|
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v 43 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEV 43 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCcccccc
Confidence 5799999999999999999999999999888766666666544
No 256
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=27.02 E-value=86 Score=31.63 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=29.0
Q ss_pred CeEEEEecCCCC-chHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 78 LRVGLICGGPSA-ERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 78 ~kV~vl~GG~S~-E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
||++|++++.-. =++| |+.++.+|++.|++|...+.
T Consensus 1 Mk~LIlYstr~GqT~kI----A~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYSTRDGQTRKI----AEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEecCCCcHHHH----HHHHHHHhhhcCCeeeeeeh
Confidence 689999987543 2666 88999999999999986654
No 257
>cd00545 MCH Methenyltetrahydromethanopterin (methenyl-H4MPT) cyclohydrolase (MCH). MCH is a cytoplasmic enzyme that has been identified in methanogenic archaea, sulfate- reducing archaea, and methylotrophic bacteria. It catalyzes the reversible formation of N(5), N(10)-methenyltetrahydromethanopterin (methenyl-H4MPT+) from N(5)-formyltetrahydromethanopterin (formyl- H4MPT), in the third step of the reaction to reduce CO2 to CH4. The protein functions as a homodimer or homotrimer, depending on the organism.
Probab=26.60 E-value=94 Score=34.61 Aligned_cols=82 Identities=12% Similarity=0.221 Sum_probs=54.6
Q ss_pred cEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHH----------------HHHHHHHhhhCCCCCCCCCcceeccccc--
Q 002207 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNIL----------------RTIIGHACSRFPNLASYNSVSSHLPGRS-- 476 (953)
Q Consensus 415 ~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll----------------~~li~~a~~r~~~~~~~~~~~~~~~~~~-- 476 (953)
.+.++|...+|. ....-+.|+++|++.+++. .+.++.|+.|..++- ++.. .|..-.
T Consensus 133 avl~lE~~~lP~---~~v~~~vA~~cgv~p~~l~~lvapT~SlaGsvqi~aRvvE~a~hKl~elg--fd~~-~I~~~~G~ 206 (312)
T cd00545 133 AVLVLESDKLPP---EEVAEKVAAECGVDPENVTLIVAPTASLAGSVQIVARVVEVALHKAHELG--FDLN-KVKDGAGS 206 (312)
T ss_pred EEEEEecCCCCC---HHHHHHHHHHcCCCHHHEEEEEecCCcceeEEEeehhHHHHHHHHHHHcC--CCHH-Hheecccc
Confidence 488999999887 3455667889999988764 677888888854433 3321 111111
Q ss_pred cc-CCCccccccCCCceEEEEecCCCc
Q 002207 477 SG-SKPTEALNKREGIREVFVIFGGDT 502 (953)
Q Consensus 477 ~~-~~~~~~~~~~~~~~~v~vl~GG~s 502 (953)
.. ..+..++.+.|++.+=+++|||+-
T Consensus 207 aPiaPv~~d~~~aMGrTNDaiiYgG~v 233 (312)
T cd00545 207 APIAPPAPDDLQAMGRTNDAILYGGRV 233 (312)
T ss_pred cCCCCCCCcHhhhhccccceeeeCCEE
Confidence 11 122246778899999999999964
No 258
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=26.58 E-value=3.4e+02 Score=28.13 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHHHHc------CCcceEEEEEEEEcCCCcEEEEeeCC-CCCCC
Q 002207 869 MSTEALDKCKQRIELIANAL------QLEGFSRIDAFVNVDNGEVLIIEVNT-VPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aL------g~~G~ariDf~v~~~~g~~~viEINt-~PGlt 919 (953)
+-+.++.++-+++.+..++. |+-|..-++..+++ +.++++.|+.+ ++|=|
T Consensus 90 lRESLL~~vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~-dle~vvfevS~RI~gGT 146 (188)
T PF06973_consen 90 LRESLLPKVFEMGERFVEASKELVPPGMIGPFCLQSIVTD-DLEFVVFEVSARIVGGT 146 (188)
T ss_dssp E-GGGHHHHHHHHHHHHHHHHHHSTT---EEEEEEEEE-T-TSSEEEEEEESSB-GGG
T ss_pred hhHhhHHHHHHHHHHHHHHHHHhcCCCccccceEEEEEcC-CceEEEEEEeccccCCC
Confidence 34566777777666665443 67788999999985 78999999986 44433
No 259
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.95 E-value=86 Score=33.62 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=25.7
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
|++||.||.+. +.| |+.+.++|.+.|++|+..+
T Consensus 8 k~~lItGas~~-~gI----G~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 8 KKIVVMGVANK-RSI----AWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CEEEEeCCCCC-Cch----HHHHHHHHHHCCCEEEEec
Confidence 78888888631 134 9999999999999988664
No 260
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=25.78 E-value=1.5e+02 Score=33.72 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=51.9
Q ss_pred HHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCC-----------ceeEEEe
Q 002207 200 CRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS-----------SIGVTVA 268 (953)
Q Consensus 200 ~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gs-----------S~GV~~v 268 (953)
-.+...-+...++|++.|+.+|+.++..+.++ ..+..++++-. -+|||.-.-.+ --||.+|
T Consensus 21 r~L~~hey~~~~ll~~~Gv~vp~g~vA~speE----A~~~akklg~k----dlVikAQ~lAgGRgKGtF~SglkgGV~iV 92 (434)
T KOG2799|consen 21 RSLGIHEYRSAALLRKYGINVPLGYVAKSPEE----AFAIAKKLGSK----DLVIKAQVLAGGRGKGTFDSGLKGGVKIV 92 (434)
T ss_pred hhhhHHHHHHHHHHHHcCCCCCCCcccCCHHH----HHHHHHHhCCc----ceEEEeeecccCcccCCcCcCcCCceEEE
Confidence 34455667778899999999999998877654 33344444321 49999854222 3478899
Q ss_pred CCHHHHHHHHHHhH
Q 002207 269 YGVIDSLKKAKGII 282 (953)
Q Consensus 269 ~~~~el~~~a~~~~ 282 (953)
.+++|+.+.+.+++
T Consensus 93 f~p~Eak~va~qmi 106 (434)
T KOG2799|consen 93 FSPQEAKAVASQMI 106 (434)
T ss_pred eChHHHHHHHHHhh
Confidence 99988877776654
No 261
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=25.71 E-value=1.6e+02 Score=28.79 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=42.7
Q ss_pred EEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHHhh
Q 002207 81 GLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHL 160 (953)
Q Consensus 81 ~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (953)
++|||+... |+.+++-++..||+|++++-.++ ++. ...... .. ......+.+
T Consensus 1 L~I~GaG~v--------a~al~~la~~lg~~v~v~d~r~e--~~~-~~~~~~-------~~----------~~~~~~~~~ 52 (136)
T PF13478_consen 1 LVIFGAGHV--------ARALARLAALLGFRVTVVDPRPE--RFP-EADEVI-------CI----------PPDDILEDL 52 (136)
T ss_dssp EEEES-STC--------HHHHHHHHHHCTEEEEEEES-CC--C-T-TSSEEE-------CS----------HHHHHHHHC
T ss_pred CEEEeCcHH--------HHHHHHHHHhCCCEEEEEcCCcc--ccC-CCCccE-------ec----------ChHHHHhcc
Confidence 366766554 88889999999999998764332 211 000000 00 000111111
Q ss_pred -ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECC
Q 002207 161 -AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGT 195 (953)
Q Consensus 161 -~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs 195 (953)
...-+.| .+.|+..-..-.++.+|+. +..|+|-
T Consensus 53 ~~~~~t~V-v~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 53 EIDPNTAV-VMTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp -S-TT-EE-E--S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred CCCCCeEE-EEcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 1134555 5777766555667888887 8999973
No 262
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=25.66 E-value=97 Score=34.51 Aligned_cols=82 Identities=11% Similarity=0.224 Sum_probs=54.5
Q ss_pred cEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHH----------------HHHHHHHhhhCCCCCCCCCcceeccccc--
Q 002207 415 TILFTDINLISGMEQTSFLFQQASKVGFSHSNIL----------------RTIIGHACSRFPNLASYNSVSSHLPGRS-- 476 (953)
Q Consensus 415 ~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll----------------~~li~~a~~r~~~~~~~~~~~~~~~~~~-- 476 (953)
.+.++|...+|. ....-+.|+++|++.+++. .+.++.|+.|..+|- ++.. .|..-.
T Consensus 133 avl~lE~~~lP~---~~v~~~vA~~cgv~p~~l~~lvapT~SlaGsvqi~aRvvE~a~hKl~elg--fd~~-~I~~~~G~ 206 (312)
T TIGR03120 133 AVIVLESDKLPD---EEVAEYIADECGVDPENLTLLVAPTASLVGSIQISARVVETALHKLEELG--FDVT-KIVSAAGT 206 (312)
T ss_pred EEEEEecCCCCC---HHHHHHHHHHcCCCHHHEEEEEecCCcceeEEEeehhHHHHHHHHHHHcC--CCHH-Hheeceec
Confidence 488999999887 3455667889999988764 677888888854332 2321 111111
Q ss_pred cc-CCCccccccCCCceEEEEecCCCc
Q 002207 477 SG-SKPTEALNKREGIREVFVIFGGDT 502 (953)
Q Consensus 477 ~~-~~~~~~~~~~~~~~~v~vl~GG~s 502 (953)
.. ..+..++.+.|++.+=+++|||+-
T Consensus 207 aPiaP~~~d~~~aMGrTNDaiiYgG~v 233 (312)
T TIGR03120 207 APIPPVKPDFIQAMGRTNDAILYGGRV 233 (312)
T ss_pred cCCCCCCCcHhhhhccccceeeeCCEE
Confidence 11 122356778899999999999964
No 263
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=25.54 E-value=71 Score=34.11 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=24.0
Q ss_pred CeEEEE-ecCCCCchHhHHHHHHHHHHHhhcCCCEEEEE
Q 002207 78 LRVGLI-CGGPSAERGISLNSARSVLDHIQGDDLLVRCY 115 (953)
Q Consensus 78 ~kV~vl-~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i 115 (953)
|||+|| ++|...|+++ +++|+..|+++..+
T Consensus 1 ~~v~Vl~~~G~n~~~~~--------~~al~~~G~~~~~i 31 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDT--------VYALRLLGVDAEIV 31 (227)
T ss_pred CeEEEEeCCCcCcHHHH--------HHHHHHCCCeEEEE
Confidence 589999 6678888887 48888899988755
No 264
>PRK09739 hypothetical protein; Provisional
Probab=25.51 E-value=1.2e+02 Score=31.55 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=32.5
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
+|||++|.|.+.. ...|-.=++.+.+.|++.|++|..+++..
T Consensus 3 mmkiliI~~sp~~-~s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 3 SMRIYLVWAHPRH-DSLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred CceEEEEEcCCCC-CCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 3799999998865 44455558889999999999998777543
No 265
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.47 E-value=64 Score=35.78 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=28.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN 120 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~ 120 (953)
.||+||.+|.- |..+..++...||+|+.++++++
T Consensus 6 ~~V~ViGaG~m---------G~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQM---------GAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHH---------HHHHHHHHHhCCCEEEEEECCHH
Confidence 48999988865 88888888889999998876553
No 266
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=25.13 E-value=7.4e+02 Score=30.17 Aligned_cols=219 Identities=10% Similarity=-0.015 Sum_probs=0.0
Q ss_pred CCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccc-------------cCCchhhHHHHHHhhcCC----
Q 002207 661 VPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDL-------------LKTPIVDIWHELTSKLQC---- 723 (953)
Q Consensus 661 IPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~-------------~~~~~~~~~~~~~~~lg~---- 723 (953)
+|+.+.+.....+.-.|.+--.. |++.|+|||+.++++.... ..+...+.+..+.... +
T Consensus 10 ~~l~~~~~~~~~~lGgK~a~L~e---m~~~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~-g~~fg 85 (530)
T PRK05878 10 VLLDGGANQPRELLGGKGHGIDM---MRRLGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET-GRTFG 85 (530)
T ss_pred EECCCCChhhhhccCHHHHhHHH---HHHCCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh-hhccC
Q ss_pred ---CcEEEecCCCC----------------------------------------------CCcceEEeCCcccHHHHHHH
Q 002207 724 ---KTLCVKPARDG----------------------------------------------CSTGVARLCCAEDLTVYVKA 754 (953)
Q Consensus 724 ---~PlvVKP~~~g----------------------------------------------sS~GV~~v~~~~eL~~~~~a 754 (953)
.|+.+-=.++. +-.++.+....+-++++.+|
T Consensus 86 ~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp~~qL~~A 165 (530)
T PRK05878 86 RGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYEQLRAA 165 (530)
T ss_pred CCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCChHHHHHHH
Q ss_pred HHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC---cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCc
Q 002207 755 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET---DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 831 (953)
Q Consensus 755 l~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G---~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~ 831 (953)
++..+.-.-...--.++....++....-.++||+.+.| + .-..+|+-..+.
T Consensus 166 ik~V~aS~~s~rA~~YR~~~gi~~~~~mAV~VQ~MV~g~~~~-------------------------~s~sGV~FT~dP- 219 (530)
T PRK05878 166 IEAVFASWNSPRAVAYRRHHGLDDDGGTAVVVQAMVFGNLDA-------------------------NSGTGVLFSRNP- 219 (530)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccCcEEEEEeCccCCCCC-------------------------CcceEEEEeCCC-
Q ss_pred eeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEe
Q 002207 832 HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 911 (953)
Q Consensus 832 ~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viE 911 (953)
..+.-...........-+...+|......-.......++..+++.+++.++-+.+| ...-|+|-+. +|++|++-
T Consensus 220 --~tg~~~~~~~~~~~GlGe~vVsG~~~p~~~~~~~~~~p~~~~eL~~~a~~LE~~fg--~pqDIEfai~--~g~L~iLQ 293 (530)
T PRK05878 220 --ITGANEPFGEWLPGGQGEDVVSGLVDVAPITALRDEQPAVYDELMAAARTLERLGR--DVQDIEFTVE--SGKLWLLQ 293 (530)
T ss_pred --CCCCCcEEEEEcCCCCCHHHhcCCcCCcchhhhcccCHHHHHHHHHHHHHHHHHcC--CceeEEEEEE--CCEEEEEE
Q ss_pred eCCC
Q 002207 912 VNTV 915 (953)
Q Consensus 912 INt~ 915 (953)
.-+.
T Consensus 294 aRp~ 297 (530)
T PRK05878 294 TRSA 297 (530)
T ss_pred eecc
No 267
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=24.78 E-value=54 Score=31.83 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=25.2
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
.+.+|||+||..|.- |..+..+|.+.||+|..++
T Consensus 7 ~~~~l~I~iIGaGrV---------G~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 7 QAARLKIGIIGAGRV---------GTALARALARAGHEVVGVY 40 (127)
T ss_dssp -----EEEEECTSCC---------CCHHHHHHHHTTSEEEEES
T ss_pred CCCccEEEEECCCHH---------HHHHHHHHHHCCCeEEEEE
Confidence 345689999999987 6778899999999987654
No 268
>PRK01215 competence damage-inducible protein A; Provisional
Probab=23.90 E-value=4e+02 Score=29.26 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=52.6
Q ss_pred cCeEEEEecCCCC-chHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 77 VLRVGLICGGPSA-ERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 77 ~~kV~vl~GG~S~-E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
++||+||.-|.-- .-++-=..+..+.+.|.+.|++|..+.+-+| +.+. +..
T Consensus 3 ~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~D-----------------d~~~-----------I~~ 54 (264)
T PRK01215 3 KWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMD-----------------DIEE-----------IVS 54 (264)
T ss_pred CCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCC-----------------CHHH-----------HHH
Confidence 4689999766421 1111112366788889999999976544333 1010 111
Q ss_pred HHHhhccCcCEEEEcCCCCCC--C-chHHHHHHHcCCccEECCC
Q 002207 156 FAEHLAANVDIVFPTIHGRFG--E-DGGIQEVLEKYNVPFVGTG 196 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~G--E-dg~iq~lle~~gIpyvGs~ 196 (953)
.......+.|+|+.. |+.| . |-+.+.+.+.+|.+.++..
T Consensus 55 ~l~~a~~~~DlVItt--GG~g~t~dD~t~eaia~~~g~~l~~~~ 96 (264)
T PRK01215 55 AFREAIDRADVVVST--GGLGPTYDDKTNEGFAKALGVELELNE 96 (264)
T ss_pred HHHHHhcCCCEEEEe--CCCcCChhhhHHHHHHHHhCCCCCCCH
Confidence 122223367999988 4444 3 4567778888899888753
No 269
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=23.61 E-value=1.7e+02 Score=35.81 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=25.8
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|+++|.||.+. -|+.+++.|.+.||+|+.+..
T Consensus 81 KvVLVTGATGg-------IG~aLAr~LLk~G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGK-------VGSRTVRELLKLGFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCH-------HHHHHHHHHHHCCCeEEEEeC
Confidence 67788888763 399999999999999987653
No 270
>PRK00549 competence damage-inducible protein A; Provisional
Probab=23.59 E-value=4.1e+02 Score=31.22 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=52.5
Q ss_pred CeEEEEecCCC-CchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 78 LRVGLICGGPS-AERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S-~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
||++||.-|.- ..-.+-=..+..+.+.|++.|++|..+.+-+| +.+. +...
T Consensus 1 m~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~D-----------------d~~~-----------I~~~ 52 (414)
T PRK00549 1 MKAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGD-----------------NPER-----------LLSA 52 (414)
T ss_pred CEEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCC-----------------CHHH-----------HHHH
Confidence 57888876642 11111112366788889999999986554333 1010 0111
Q ss_pred HHhhccCcCEEEEcCCCCCC--C-chHHHHHHHcCCccEECCC
Q 002207 157 AEHLAANVDIVFPTIHGRFG--E-DGGIQEVLEKYNVPFVGTG 196 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~G--E-dg~iq~lle~~gIpyvGs~ 196 (953)
......+.|+|+.. |+.| . |-+.+.+.+.+|.+.....
T Consensus 53 l~~a~~~~DlVItT--GGlGpt~dD~t~ea~a~~~g~~l~~~~ 93 (414)
T PRK00549 53 LEIAEERSDLIITT--GGLGPTKDDLTKETVAKFLGRELVLDE 93 (414)
T ss_pred HHHhccCCCEEEEC--CCCCCCCCccHHHHHHHHhCCCCcCCH
Confidence 12223478999988 4444 3 5567777888999987653
No 271
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=23.54 E-value=1.3e+02 Score=34.94 Aligned_cols=36 Identities=8% Similarity=-0.026 Sum_probs=25.5
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|...+||+|+. |... -|+.+++.|.+.||+|+.+.-
T Consensus 57 ~~~~~kVLVtG-atG~-------IG~~l~~~Ll~~G~~V~~l~R 92 (390)
T PLN02657 57 EPKDVTVLVVG-ATGY-------IGKFVVRELVRRGYNVVAVAR 92 (390)
T ss_pred CCCCCEEEEEC-CCcH-------HHHHHHHHHHHCCCEEEEEEe
Confidence 44446776664 4332 399999999999999987653
No 272
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=23.47 E-value=1e+02 Score=35.21 Aligned_cols=38 Identities=5% Similarity=-0.087 Sum_probs=29.6
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRC 114 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~ 114 (953)
|.+.|||+|+.+|...=|.. +|+++.++|++.|++++.
T Consensus 1 ~~~~~rili~t~~~G~GH~~---~a~al~~~l~~~g~~~~~ 38 (380)
T PRK13609 1 MIKNPKVLILTAHYGNGHVQ---VAKTLEQTFRQKGIKDVI 38 (380)
T ss_pred CCCCCeEEEEEcCCCchHHH---HHHHHHHHHHhcCCCcEE
Confidence 56678999999887543554 599999999999998543
No 273
>PRK09362 phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed
Probab=23.21 E-value=1.4e+02 Score=32.22 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhC----CCCeeEeeeeecCCCCccccccccccCcccCCcEEEE-ee
Q 002207 362 FPIVVINSIREGASLLFQRLG----LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT-DI 421 (953)
Q Consensus 362 l~~~~~~~i~~~a~~~~~aLg----~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~l-EI 421 (953)
++++..+.|++.+.+++..|. -+|+--+||.+ +|+.+.+|++++. ||
T Consensus 143 ~t~~e~~~i~~~al~i~~~l~~~~~~~Gl~LvD~K~-------------EFG~~~~g~ivL~DEi 194 (238)
T PRK09362 143 ATPEELAEIKELALKINDVLKGLFAGAGIRLVDFKL-------------EFGRDKDGEIVLADEI 194 (238)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-------------EeeEcCCCCEEEEEee
Confidence 678888999999999999874 36899999998 5888888987665 46
No 274
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=22.85 E-value=2.3e+02 Score=28.77 Aligned_cols=104 Identities=14% Similarity=0.253 Sum_probs=58.9
Q ss_pred EEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHHhh
Q 002207 81 GLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEHL 160 (953)
Q Consensus 81 ~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (953)
.|++||..+ =|..++++.+..+|-|--|++..+-..-. .+. .+.+-.+. +... ....+..+.+
T Consensus 6 VivYGGkGA-------LGSacv~~FkannywV~siDl~eNe~Ad~----sI~--V~~~~swt-EQe~---~v~~~vg~sL 68 (236)
T KOG4022|consen 6 VIVYGGKGA-------LGSACVEFFKANNYWVLSIDLSENEQADS----SIL--VDGNKSWT-EQEQ---SVLEQVGSSL 68 (236)
T ss_pred EEEEcCcch-------HhHHHHHHHHhcCeEEEEEeecccccccc----eEE--ecCCcchh-HHHH---HHHHHHHHhh
Confidence 467888775 27789999999999999888766532110 000 00000000 0000 0011111222
Q ss_pred -ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHH
Q 002207 161 -AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQ 202 (953)
Q Consensus 161 -~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i 202 (953)
.+++|.||-+..|--|-+..-..++....+-+ -.++-++++
T Consensus 69 ~gekvDav~CVAGGWAGGnAksKdl~KNaDLMw-KQSvwtSaI 110 (236)
T KOG4022|consen 69 QGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMW-KQSVWTSAI 110 (236)
T ss_pred cccccceEEEeeccccCCCcchhhhhhchhhHH-HHHHHHHHH
Confidence 35899999999998887777667776666533 234555555
No 275
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.66 E-value=1.5e+02 Score=27.08 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=24.3
Q ss_pred cCeEEEEec-CCCCchHhHHHHHHHHHHHhhcCCCEEEE
Q 002207 77 VLRVGLICG-GPSAERGISLNSARSVLDHIQGDDLLVRC 114 (953)
Q Consensus 77 ~~kV~vl~G-G~S~E~evSl~Sa~~V~~aL~~~g~~V~~ 114 (953)
++||++.|| |.++ |..-+..+-+.|.+.|+++..
T Consensus 2 k~kILvvCgsG~~T----S~m~~~ki~~~l~~~gi~~~v 36 (94)
T PRK10310 2 KRKIIVACGGAVAT----STMAAEEIKELCQSHNIPVEL 36 (94)
T ss_pred CCeEEEECCCchhH----HHHHHHHHHHHHHHCCCeEEE
Confidence 358999998 4443 455567777888889987653
No 276
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=22.41 E-value=97 Score=35.59 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=26.9
Q ss_pred CCCcCeEEEEec-CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 74 GGRVLRVGLICG-GPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 74 ~~~~~kV~vl~G-G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|+.+|||+|+.| |.- |+.+++.|.+.||+|+.+..
T Consensus 18 ~~~~~~IlVtGgtGfI---------G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 18 PSEKLRICITGAGGFI---------ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCEEEEECCccHH---------HHHHHHHHHhCCCEEEEEEe
Confidence 446688887755 332 89999999999999987653
No 277
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=21.75 E-value=1.5e+02 Score=33.65 Aligned_cols=75 Identities=16% Similarity=0.048 Sum_probs=49.0
Q ss_pred HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 002207 652 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 731 (953)
Q Consensus 652 iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~ 731 (953)
++..|+..+.-+.-|-.. .+..||..++.+ ++.+ |--|..+-+.-+... . . +. +.--|+||.
T Consensus 243 ~~~~l~~~~~~~lEPaWk--~ilsNK~lLplL---W~~f--PnHp~LL~t~F~~~~--------~-~-~~-~~~yv~KPl 304 (387)
T COG0754 243 LAQNLENARTIFLEPAWK--SILSNKALLPLL---WERF--PNHPNLLPTYFEPDD--------E-E-KL-GESYVRKPL 304 (387)
T ss_pred HHHHhcCCCcEEechhHH--HHhccccHHHHH---HHhC--CCCcccccccCCCCc--------c-c-cc-hhhhhcccc
Confidence 677788888888877666 568899999988 6554 333333322211100 0 0 12 123699999
Q ss_pred CCCCCcceEEeCC
Q 002207 732 RDGCSTGVARLCC 744 (953)
Q Consensus 732 ~~gsS~GV~~v~~ 744 (953)
.+-.+.+|+++.+
T Consensus 305 ~gREGaNv~i~~~ 317 (387)
T COG0754 305 FGREGANVSIFED 317 (387)
T ss_pred ccccCCCeeEEec
Confidence 9999999999866
No 278
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=21.61 E-value=1.6e+02 Score=30.64 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=31.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
|||++|.|.++. ...+..=++.+.+.|.+.|+++..+++.
T Consensus 1 mkIl~I~GSpr~-~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGSPRF-PSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcCCCC-CChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 689999998876 3444445788888899899999987753
No 279
>PLN00016 RNA-binding protein; Provisional
Probab=21.27 E-value=1.4e+02 Score=34.16 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=24.8
Q ss_pred CeEEEE---ecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 78 LRVGLI---CGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl---~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
+||+|+ +||..- -|..+++.|.+.||+|+.+.-+
T Consensus 53 ~~VLVt~~~~GatG~-------iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNSGGHAF-------IGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ceEEEEeccCCCcee-------EhHHHHHHHHHCCCEEEEEecC
Confidence 579888 233322 2899999999999999876543
No 280
>PRK07208 hypothetical protein; Provisional
Probab=21.01 E-value=85 Score=37.27 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=27.4
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|+++++|+||.||.| |-+....|.+.|++|.++.-
T Consensus 1 ~~~~~~vvIiGaGis---------GL~aA~~L~~~g~~v~v~E~ 35 (479)
T PRK07208 1 MTNKKSVVIIGAGPA---------GLTAAYELLKRGYPVTVLEA 35 (479)
T ss_pred CCCCCcEEEECcCHH---------HHHHHHHHHHCCCcEEEEec
Confidence 556679999999975 66677778778999887753
No 281
>PRK06753 hypothetical protein; Provisional
Probab=20.99 E-value=84 Score=35.77 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=25.3
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
|||+|+.||++ |.....+|.+.|++|.++.
T Consensus 1 ~~V~IvGgG~a---------Gl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 1 MKIAIIGAGIG---------GLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred CEEEEECCCHH---------HHHHHHHHHhCCCcEEEEe
Confidence 58999999976 7778888999999988664
No 282
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.90 E-value=3.5e+02 Score=27.71 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=63.6
Q ss_pred ChHHHHHHhhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeC
Q 002207 623 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRK 702 (953)
Q Consensus 623 ~~~~~~~~~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~ 702 (953)
.+.+|+...+++.--++++-- .-...++...+.+||||+..-..-+.. .+++. +++.+++...-..+.+
T Consensus 50 e~~~W~~e~k~~gi~v~vvSN---n~e~RV~~~~~~l~v~fi~~A~KP~~~-----~fr~A---l~~m~l~~~~vvmVGD 118 (175)
T COG2179 50 ELRAWLAELKEAGIKVVVVSN---NKESRVARAAEKLGVPFIYRAKKPFGR-----AFRRA---LKEMNLPPEEVVMVGD 118 (175)
T ss_pred HHHHHHHHHHhcCCEEEEEeC---CCHHHHHhhhhhcCCceeecccCccHH-----HHHHH---HHHcCCChhHEEEEcc
Confidence 456898888877555555543 334479999999999999765544444 33344 7889999988877764
Q ss_pred ccccCCchhhHHHHHH--hhcCCCcEEEecCCCCCCcc
Q 002207 703 EDLLKTPIVDIWHELT--SKLQCKTLCVKPARDGCSTG 738 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~--~~lg~~PlvVKP~~~gsS~G 738 (953)
. + +.++. ...|.+.+.|+|.....+..
T Consensus 119 q-L--------~TDVlggnr~G~~tIlV~Pl~~~d~~~ 147 (175)
T COG2179 119 Q-L--------FTDVLGGNRAGMRTILVEPLVAPDGWI 147 (175)
T ss_pred h-h--------hhhhhcccccCcEEEEEEEeccccchh
Confidence 2 1 12221 23444789999987766633
No 283
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=20.76 E-value=1.2e+03 Score=26.54 Aligned_cols=94 Identities=14% Similarity=0.250 Sum_probs=55.0
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
.+..+||+|+| .++.+..+++ -+-+.+.+++.|++|+...++.. ++.
T Consensus 156 ~Pnak~Igv~Y-~p~E~ns~~l--~eelk~~A~~~Gl~vve~~v~~~----------------ndi-------------- 202 (322)
T COG2984 156 LPNAKSIGVLY-NPGEANSVSL--VEELKKEARKAGLEVVEAAVTSV----------------NDI-------------- 202 (322)
T ss_pred CCCCeeEEEEe-CCCCcccHHH--HHHHHHHHHHCCCEEEEEecCcc----------------ccc--------------
Confidence 34457999999 3444455553 45677788899999998876442 111
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCc-hHHHHHHHcCCccEECCCHHHH
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGED-GGIQEVLEKYNVPFVGTGSRAC 200 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEd-g~iq~lle~~gIpyvGs~~~a~ 200 (953)
....+.+..++|++|.-..-..--- -.+-......+||.++++....
T Consensus 203 ~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~~a~~~kiPli~sd~~~V 250 (322)
T COG2984 203 PRAVQALLGKVDVIYIPTDNLIVSAIESLLQVANKAKIPLIASDTSSV 250 (322)
T ss_pred HHHHHHhcCCCcEEEEecchHHHHHHHHHHHHHHHhCCCeecCCHHHH
Confidence 1122344568999887663110000 0122334567899998876543
No 284
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=20.61 E-value=60 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=24.8
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
||+|+.+|.- |+++...+...||+|..++.+.
T Consensus 1 ~V~ViGaG~m---------G~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTM---------GRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHH---------HHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHH---------HHHHHHHHHhCCCcEEEEECCh
Confidence 6999998865 8888888888899999887644
Done!