Query 002207
Match_columns 953
No_of_seqs 600 out of 4795
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:57:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fu0_A D-alanine--D-alanine li 100.0 3.9E-61 1.3E-65 545.6 33.2 341 77-459 3-351 (357)
2 3tqt_A D-alanine--D-alanine li 100.0 2.7E-60 9.1E-65 540.1 38.2 345 74-460 1-356 (372)
3 3k3p_A D-alanine--D-alanine li 100.0 1.1E-58 3.7E-63 528.5 35.7 337 76-460 36-376 (383)
4 3lwb_A D-alanine--D-alanine li 100.0 1E-58 3.5E-63 528.0 32.2 347 76-462 9-372 (373)
5 3e5n_A D-alanine-D-alanine lig 100.0 7.9E-59 2.7E-63 531.0 29.8 348 72-460 18-374 (386)
6 4fu0_A D-alanine--D-alanine li 100.0 2.8E-58 9.7E-63 522.1 30.6 350 489-951 1-350 (357)
7 3i12_A D-alanine-D-alanine lig 100.0 1.9E-57 6.4E-62 516.6 36.3 345 76-460 2-355 (364)
8 3se7_A VANA; alpha-beta struct 100.0 5.6E-56 1.9E-60 501.3 33.7 337 76-459 2-344 (346)
9 3tqt_A D-alanine--D-alanine li 100.0 3.3E-56 1.1E-60 506.4 31.9 352 489-952 2-355 (372)
10 1a9x_A Carbamoyl phosphate syn 100.0 1.6E-53 5.6E-58 543.1 51.0 631 77-918 7-848 (1073)
11 3lwb_A D-alanine--D-alanine li 100.0 3.6E-55 1.2E-59 498.8 31.8 354 489-952 8-369 (373)
12 3k3p_A D-alanine--D-alanine li 100.0 1.6E-54 5.5E-59 494.1 32.4 340 489-952 35-375 (383)
13 3e5n_A D-alanine-D-alanine lig 100.0 1.5E-54 5.3E-59 495.6 29.0 358 484-952 15-373 (386)
14 3i12_A D-alanine-D-alanine lig 100.0 2.4E-53 8.3E-58 482.8 36.7 353 489-952 1-354 (364)
15 2fb9_A D-alanine:D-alanine lig 100.0 1.5E-52 5E-57 468.6 34.1 319 76-457 2-322 (322)
16 1ehi_A LMDDL2, D-alanine:D-lac 100.0 9.5E-53 3.3E-57 480.1 32.6 340 77-460 3-356 (377)
17 1e4e_A Vancomycin/teicoplanin 100.0 1.2E-51 4.1E-56 465.3 36.3 335 77-457 3-342 (343)
18 4eg0_A D-alanine--D-alanine li 100.0 2.7E-52 9.1E-57 465.5 29.9 304 76-457 12-316 (317)
19 3se7_A VANA; alpha-beta struct 100.0 5.9E-52 2E-56 468.4 30.8 339 490-952 2-344 (346)
20 2i87_A D-alanine-D-alanine lig 100.0 2.9E-51 1E-55 465.9 34.2 339 77-460 3-346 (364)
21 1ehi_A LMDDL2, D-alanine:D-lac 100.0 2.9E-49 1E-53 451.3 32.6 347 489-952 1-355 (377)
22 2pvp_A D-alanine-D-alanine lig 100.0 2.6E-49 9E-54 449.3 26.2 324 73-459 16-352 (367)
23 2fb9_A D-alanine:D-alanine lig 100.0 2.3E-48 8E-53 434.6 31.5 321 489-950 1-322 (322)
24 1e4e_A Vancomycin/teicoplanin 100.0 7.8E-48 2.7E-52 434.2 34.7 337 490-950 2-342 (343)
25 4eg0_A D-alanine--D-alanine li 100.0 4.4E-48 1.5E-52 431.4 31.7 304 490-950 12-316 (317)
26 3r5x_A D-alanine--D-alanine li 100.0 1.4E-47 4.9E-52 424.7 28.4 301 76-459 2-302 (307)
27 2i87_A D-alanine-D-alanine lig 100.0 4.2E-47 1.4E-51 431.6 31.8 345 489-952 1-345 (364)
28 2pvp_A D-alanine-D-alanine lig 100.0 5E-47 1.7E-51 430.7 25.2 328 489-952 18-352 (367)
29 3r5x_A D-alanine--D-alanine li 100.0 1.5E-43 5E-48 392.6 27.5 300 490-952 2-302 (307)
30 1iow_A DD-ligase, DDLB, D-ALA\ 100.0 1.1E-42 3.8E-47 384.6 30.2 300 77-455 2-305 (306)
31 1iow_A DD-ligase, DDLB, D-ALA\ 100.0 6.2E-38 2.1E-42 346.5 31.4 304 491-948 2-305 (306)
32 3jrx_A Acetyl-COA carboxylase 100.0 6.6E-31 2.2E-35 312.3 33.1 296 161-509 137-482 (587)
33 3glk_A Acetyl-COA carboxylase 100.0 2.5E-31 8.4E-36 315.0 27.4 296 161-509 121-466 (540)
34 3ouz_A Biotin carboxylase; str 100.0 1E-29 3.5E-34 296.3 30.0 353 77-504 6-369 (446)
35 3k5i_A Phosphoribosyl-aminoimi 100.0 2.8E-28 9.5E-33 280.4 28.3 295 74-457 21-317 (403)
36 3u9t_A MCC alpha, methylcroton 100.0 3.2E-29 1.1E-33 304.2 20.2 364 78-515 29-405 (675)
37 3vot_A L-amino acid ligase, BL 100.0 1.5E-27 5.3E-32 276.2 30.9 302 77-458 5-320 (425)
38 2vpq_A Acetyl-COA carboxylase; 100.0 1.2E-27 4.2E-32 279.2 30.1 341 78-492 2-355 (451)
39 3hbl_A Pyruvate carboxylase; T 100.0 9.5E-28 3.3E-32 304.8 29.3 352 76-502 3-373 (1150)
40 3q2o_A Phosphoribosylaminoimid 100.0 2E-27 6.9E-32 272.1 29.1 279 78-444 15-294 (389)
41 3n6r_A Propionyl-COA carboxyla 100.0 1E-28 3.4E-33 300.1 17.2 348 78-499 3-362 (681)
42 1a9x_A Carbamoyl phosphate syn 100.0 5.8E-28 2E-32 308.1 23.9 306 76-452 558-869 (1073)
43 1vkz_A Phosphoribosylamine--gl 100.0 3.9E-27 1.3E-31 271.8 27.9 237 162-452 69-314 (412)
44 2dzd_A Pyruvate carboxylase; b 100.0 6.4E-27 2.2E-31 273.8 29.9 342 78-494 7-367 (461)
45 1ulz_A Pyruvate carboxylase N- 100.0 1.8E-27 6.2E-32 277.7 24.5 307 78-458 3-318 (451)
46 2w70_A Biotin carboxylase; lig 100.0 1.6E-27 5.5E-32 278.0 24.0 306 78-458 3-319 (449)
47 4dim_A Phosphoribosylglycinami 100.0 3.9E-27 1.3E-31 270.7 25.8 303 73-458 3-308 (403)
48 3aw8_A PURK, phosphoribosylami 100.0 1.2E-26 4.2E-31 263.5 29.1 287 79-458 1-289 (369)
49 2r85_A PURP protein PF1517; AT 100.0 2.8E-27 9.7E-32 264.3 22.9 305 77-459 2-327 (334)
50 3ax6_A Phosphoribosylaminoimid 100.0 1E-26 3.5E-31 265.2 27.3 286 78-458 2-288 (380)
51 3orq_A N5-carboxyaminoimidazol 99.9 4.5E-27 1.6E-31 268.0 23.0 275 77-444 12-290 (377)
52 1w96_A ACC, acetyl-coenzyme A 99.9 1.8E-26 6.2E-31 275.8 29.2 279 162-493 129-464 (554)
53 3va7_A KLLA0E08119P; carboxyla 99.9 2.9E-27 9.9E-32 300.9 23.5 353 74-500 28-392 (1236)
54 3mjf_A Phosphoribosylamine--gl 99.9 1.4E-26 4.8E-31 268.4 27.0 242 162-458 66-321 (431)
55 2ip4_A PURD, phosphoribosylami 99.9 2.8E-26 9.7E-31 264.9 27.2 237 162-452 60-306 (417)
56 1kjq_A GART 2, phosphoribosylg 99.9 4.3E-26 1.5E-30 260.9 27.3 296 76-458 10-309 (391)
57 1uc8_A LYSX, lysine biosynthes 99.9 1.2E-26 4.2E-31 252.2 19.5 271 80-452 2-275 (280)
58 4e4t_A Phosphoribosylaminoimid 99.9 9.8E-26 3.3E-30 260.3 28.1 289 78-458 36-330 (419)
59 3lp8_A Phosphoribosylamine-gly 99.9 2.5E-25 8.6E-30 258.6 30.6 243 162-460 82-338 (442)
60 3eth_A Phosphoribosylaminoimid 99.9 8.4E-26 2.9E-30 254.5 24.3 263 79-457 3-268 (355)
61 2yw2_A Phosphoribosylamine--gl 99.9 1.1E-25 3.7E-30 260.5 25.5 237 162-451 61-311 (424)
62 2yrx_A Phosphoribosylglycinami 99.9 1.8E-25 6.2E-30 260.8 27.3 237 162-451 82-332 (451)
63 2dwc_A PH0318, 433AA long hypo 99.9 1E-25 3.5E-30 261.6 24.8 300 77-458 19-324 (433)
64 2qk4_A Trifunctional purine bi 99.9 1.9E-25 6.4E-30 260.8 25.5 238 162-452 87-339 (452)
65 2z04_A Phosphoribosylaminoimid 99.9 1.1E-25 3.7E-30 255.4 20.9 279 78-458 2-281 (365)
66 2xcl_A Phosphoribosylamine--gl 99.9 4.9E-25 1.7E-29 254.9 22.6 237 162-451 61-311 (422)
67 2qf7_A Pyruvate carboxylase pr 99.9 5.9E-25 2E-29 280.0 24.4 331 98-493 26-382 (1165)
68 3jrx_A Acetyl-COA carboxylase 99.9 2.2E-24 7.4E-29 256.4 27.5 231 626-919 130-384 (587)
69 4ffl_A PYLC; amino acid, biosy 99.9 8.7E-25 3E-29 247.7 23.0 269 78-458 2-271 (363)
70 3glk_A Acetyl-COA carboxylase 99.9 2.1E-24 7.1E-29 255.7 26.9 232 625-919 113-368 (540)
71 2pn1_A Carbamoylphosphate synt 99.9 8.3E-25 2.8E-29 244.4 21.4 222 162-451 71-293 (331)
72 3df7_A Putative ATP-grAsp supe 99.9 1E-24 3.4E-29 241.4 19.9 202 161-451 67-271 (305)
73 3k5i_A Phosphoribosyl-aminoimi 99.9 3E-23 1E-27 238.5 31.4 209 634-919 86-295 (403)
74 3vmm_A Alanine-anticapsin liga 99.9 5.9E-24 2E-28 248.8 25.7 233 161-456 100-357 (474)
75 3mjf_A Phosphoribosylamine--gl 99.9 9E-24 3.1E-28 244.9 25.6 245 633-949 66-319 (431)
76 1vkz_A Phosphoribosylamine--gl 99.9 6.4E-24 2.2E-28 244.9 24.0 222 633-921 69-295 (412)
77 3lp8_A Phosphoribosylamine-gly 99.9 1.2E-23 4.3E-28 244.4 25.2 245 633-950 82-335 (442)
78 1z2n_X Inositol 1,3,4-trisphos 99.9 1.1E-23 3.8E-28 234.7 23.2 264 76-434 10-308 (324)
79 3ax6_A Phosphoribosylaminoimid 99.9 1.1E-22 3.8E-27 231.8 30.6 202 633-921 61-267 (380)
80 2q7d_A Inositol-tetrakisphosph 99.9 9E-24 3.1E-28 237.0 20.9 289 72-458 13-333 (346)
81 3vot_A L-amino acid ligase, BL 99.9 2.6E-23 8.9E-28 240.7 24.1 241 633-949 74-318 (425)
82 1w96_A ACC, acetyl-coenzyme A 99.9 7E-23 2.4E-27 244.8 27.3 233 625-919 120-375 (554)
83 1kjq_A GART 2, phosphoribosylg 99.9 2.8E-22 9.4E-27 229.3 30.6 212 633-921 73-288 (391)
84 3ouz_A Biotin carboxylase; str 99.9 1.3E-22 4.4E-27 236.4 28.3 249 626-949 69-321 (446)
85 3aw8_A PURK, phosphoribosylami 99.9 7.7E-23 2.6E-27 232.3 25.5 209 633-922 58-269 (369)
86 2ip4_A PURD, phosphoribosylami 99.9 1.4E-22 4.7E-27 234.0 26.6 217 633-919 60-285 (417)
87 1ulz_A Pyruvate carboxylase N- 99.9 2.1E-22 7.1E-27 234.9 27.6 221 633-919 72-295 (451)
88 2vpq_A Acetyl-COA carboxylase; 99.9 1.8E-22 6.2E-27 235.4 26.4 223 632-919 71-296 (451)
89 2yw2_A Phosphoribosylamine--gl 99.9 1.3E-22 4.4E-27 234.7 24.9 223 633-920 61-292 (424)
90 3df7_A Putative ATP-grAsp supe 99.9 1.8E-23 6.3E-28 231.3 16.9 187 631-922 66-255 (305)
91 1uc8_A LYSX, lysine biosynthes 99.9 2E-23 7E-28 226.8 16.9 209 634-920 48-258 (280)
92 2dwc_A PH0318, 433AA long hypo 99.9 3.3E-22 1.1E-26 232.0 27.7 215 633-921 81-301 (433)
93 3q2o_A Phosphoribosylaminoimid 99.9 3.9E-22 1.4E-26 228.2 27.6 210 633-922 74-285 (389)
94 4dim_A Phosphoribosylglycinami 99.9 2.5E-22 8.4E-27 230.7 25.1 214 633-920 70-284 (403)
95 2r85_A PURP protein PF1517; AT 99.9 2.6E-22 8.9E-27 224.1 24.1 242 635-951 63-326 (334)
96 2w70_A Biotin carboxylase; lig 99.9 3.8E-22 1.3E-26 232.5 26.4 220 633-919 73-296 (449)
97 1gsa_A Glutathione synthetase; 99.9 4.9E-23 1.7E-27 227.6 17.6 294 78-456 2-313 (316)
98 3orq_A N5-carboxyaminoimidazol 99.9 3.5E-22 1.2E-26 227.6 23.2 218 634-936 73-303 (377)
99 2yrx_A Phosphoribosylglycinami 99.9 6.9E-22 2.4E-26 230.5 26.0 223 633-920 82-313 (451)
100 3eth_A Phosphoribosylaminoimid 99.9 4.7E-22 1.6E-26 224.0 23.7 202 635-920 43-247 (355)
101 3vmm_A Alanine-anticapsin liga 99.9 1E-21 3.5E-26 229.8 27.3 230 632-917 100-332 (474)
102 2xcl_A Phosphoribosylamine--gl 99.9 3.9E-22 1.3E-26 230.5 22.1 223 633-920 61-292 (422)
103 2dzd_A Pyruvate carboxylase; b 99.9 1.2E-21 4.1E-26 229.1 26.4 221 632-919 77-300 (461)
104 2q7d_A Inositol-tetrakisphosph 99.9 2.2E-22 7.6E-27 225.7 17.9 224 633-922 62-317 (346)
105 2qk4_A Trifunctional purine bi 99.9 7.4E-22 2.5E-26 230.4 23.0 223 633-920 87-319 (452)
106 4e4t_A Phosphoribosylaminoimid 99.9 2.8E-21 9.5E-26 223.0 26.5 209 633-920 95-308 (419)
107 1z2n_X Inositol 1,3,4-trisphos 99.9 4.8E-21 1.6E-25 213.3 22.6 208 635-922 56-305 (324)
108 2z04_A Phosphoribosylaminoimid 99.9 1E-21 3.6E-26 222.5 16.0 203 633-922 56-261 (365)
109 3n6r_A Propionyl-COA carboxyla 99.9 1.3E-21 4.3E-26 237.9 16.0 250 625-949 64-317 (681)
110 4ffl_A PYLC; amino acid, biosy 99.9 9.3E-21 3.2E-25 214.6 21.2 189 632-921 61-250 (363)
111 3va7_A KLLA0E08119P; carboxyla 99.9 4.9E-21 1.7E-25 243.9 20.0 252 625-949 93-346 (1236)
112 3hbl_A Pyruvate carboxylase; T 99.9 1.1E-20 3.9E-25 240.1 22.6 249 625-949 67-319 (1150)
113 2r7k_A 5-formaminoimidazole-4- 99.8 2.3E-20 7.9E-25 210.2 22.1 312 76-458 17-353 (361)
114 3u9t_A MCC alpha, methylcroton 99.8 3.9E-21 1.3E-25 233.4 15.7 251 626-949 91-343 (675)
115 2pn1_A Carbamoylphosphate synt 99.8 4.3E-21 1.5E-25 214.2 13.7 199 633-917 71-273 (331)
116 2qf7_A Pyruvate carboxylase pr 99.8 2.3E-20 8E-25 237.9 18.7 222 633-919 92-316 (1165)
117 1gsa_A Glutathione synthetase; 99.8 1.4E-18 4.8E-23 191.8 24.6 204 634-920 79-292 (316)
118 3ln6_A Glutathione biosynthesi 99.8 4.6E-18 1.6E-22 207.7 19.0 202 193-429 471-726 (750)
119 2pbz_A Hypothetical protein; N 99.8 5.3E-19 1.8E-23 195.5 9.4 292 78-459 3-305 (320)
120 3ln6_A Glutathione biosynthesi 99.7 5.3E-17 1.8E-21 198.3 17.7 189 664-920 471-726 (750)
121 3ln7_A Glutathione biosynthesi 99.7 2.8E-17 9.6E-22 200.2 14.8 228 161-428 444-731 (757)
122 1i7n_A Synapsin II; synapse, p 99.7 4.3E-16 1.5E-20 171.0 19.9 207 163-430 68-287 (309)
123 2r7k_A 5-formaminoimidazole-4- 99.7 6.9E-16 2.3E-20 173.8 21.2 231 653-951 102-353 (361)
124 3ln7_A Glutathione biosynthesi 99.7 1.2E-16 4.1E-21 194.7 14.6 221 622-920 433-732 (757)
125 1pk8_A RAT synapsin I; ATP bin 99.7 2.3E-15 8E-20 169.7 20.7 207 163-430 180-399 (422)
126 1i7n_A Synapsin II; synapse, p 99.7 4.9E-15 1.7E-19 162.6 22.2 207 634-921 68-287 (309)
127 2p0a_A Synapsin-3, synapsin II 99.7 2.3E-15 8E-20 167.1 19.4 206 163-429 85-303 (344)
128 1wr2_A Hypothetical protein PH 99.6 5.7E-16 1.9E-20 165.1 10.1 187 202-425 18-217 (238)
129 2p0a_A Synapsin-3, synapsin II 99.6 1.6E-14 5.6E-19 160.3 21.1 206 634-920 85-303 (344)
130 1pk8_A RAT synapsin I; ATP bin 99.6 3.5E-14 1.2E-18 160.2 22.3 207 634-921 180-399 (422)
131 2pbz_A Hypothetical protein; N 99.6 4.8E-15 1.6E-19 163.9 13.1 210 656-951 79-304 (320)
132 1wr2_A Hypothetical protein PH 99.6 1.2E-15 3.9E-20 162.7 7.4 181 672-916 17-217 (238)
133 3t7a_A Inositol pyrophosphate 99.4 6.4E-12 2.2E-16 134.4 18.4 220 635-926 58-300 (330)
134 2cqy_A Propionyl-COA carboxyla 99.4 1.2E-14 3.9E-19 134.7 -4.5 100 199-307 2-107 (108)
135 3t7a_A Inositol pyrophosphate 99.4 6.7E-12 2.3E-16 134.3 15.3 238 163-458 57-316 (330)
136 2cqy_A Propionyl-COA carboxyla 99.3 7E-14 2.4E-18 129.4 -0.8 95 670-793 2-99 (108)
137 2nu8_B SCS-beta, succinyl-COA 98.9 2.1E-09 7.2E-14 121.9 10.0 98 204-310 3-116 (388)
138 2fp4_B Succinyl-COA ligase [GD 98.9 4E-09 1.4E-13 119.7 10.3 98 204-310 3-123 (395)
139 2nu8_B SCS-beta, succinyl-COA 98.7 3.5E-08 1.2E-12 111.9 9.1 108 675-828 3-116 (388)
140 2fp4_B Succinyl-COA ligase [GD 98.6 5.9E-08 2E-12 110.1 8.5 107 676-828 4-123 (395)
141 3ufx_B Succinyl-COA synthetase 98.5 3.6E-07 1.2E-11 103.8 10.3 98 205-311 4-109 (397)
142 3ufx_B Succinyl-COA synthetase 98.2 5.8E-06 2E-10 93.9 11.2 101 676-828 4-108 (397)
143 3tig_A TTL protein; ATP-grAsp, 98.0 3.6E-05 1.2E-09 86.2 12.5 175 248-459 146-361 (380)
144 3tig_A TTL protein; ATP-grAsp, 97.9 0.00013 4.6E-09 81.5 15.1 67 871-952 284-361 (380)
145 3mwd_A ATP-citrate synthase; A 93.8 0.13 4.3E-06 58.6 8.8 100 206-311 8-128 (425)
146 3pff_A ATP-citrate synthase; p 92.1 0.2 6.8E-06 61.4 7.6 100 206-311 8-128 (829)
147 3mwd_A ATP-citrate synthase; A 85.6 1.8 6.1E-05 49.2 8.7 64 678-749 9-82 (425)
148 3pff_A ATP-citrate synthase; p 78.3 2.4 8.2E-05 52.0 6.5 64 678-749 9-82 (829)
149 2l2q_A PTS system, cellobiose- 71.3 23 0.00079 31.8 9.8 94 76-211 3-97 (109)
150 3sbx_A Putative uncharacterize 58.5 25 0.00087 35.1 8.0 37 77-114 13-49 (189)
151 3ic5_A Putative saccharopine d 57.3 29 0.00098 30.4 7.7 31 78-117 6-37 (118)
152 3nbm_A PTS system, lactose-spe 56.5 54 0.0018 29.5 9.2 93 76-209 5-99 (108)
153 3ff4_A Uncharacterized protein 56.3 36 0.0012 31.3 8.2 34 78-116 5-38 (122)
154 1iuk_A Hypothetical protein TT 53.6 50 0.0017 30.9 8.9 34 78-116 14-47 (140)
155 2duw_A Putative COA-binding pr 52.0 34 0.0012 32.3 7.5 35 78-117 14-48 (145)
156 3k1t_A Glutamate--cysteine lig 51.8 22 0.00077 39.2 6.7 64 252-323 280-350 (432)
157 1tvm_A PTS system, galactitol- 47.9 1.5E+02 0.005 26.6 10.8 34 76-113 20-54 (113)
158 3abi_A Putative uncharacterize 47.7 5.8 0.0002 43.8 1.4 92 76-194 15-106 (365)
159 4fgs_A Probable dehydrogenase 47.6 13 0.00043 39.5 4.0 39 72-117 21-61 (273)
160 2zki_A 199AA long hypothetical 47.2 16 0.00054 36.1 4.5 41 75-119 2-42 (199)
161 4g65_A TRK system potassium up 43.2 8.3 0.00028 44.2 1.8 32 77-117 3-34 (461)
162 2d59_A Hypothetical protein PH 43.2 63 0.0022 30.3 7.9 37 78-121 23-59 (144)
163 1y81_A Conserved hypothetical 42.3 65 0.0022 30.1 7.7 40 75-121 12-51 (138)
164 2vob_A Trypanothione synthetas 41.0 49 0.0017 39.5 8.0 98 181-297 488-587 (652)
165 2io8_A Bifunctional glutathion 38.6 14 0.00047 44.0 2.7 96 180-298 474-573 (619)
166 3n6x_A Putative glutathionylsp 38.0 25 0.00086 40.2 4.7 56 714-793 355-412 (474)
167 3rpe_A MDAB, modulator of drug 36.7 34 0.0012 34.9 5.1 43 77-119 25-70 (218)
168 1rtt_A Conserved hypothetical 35.8 22 0.00075 35.0 3.4 42 74-117 3-44 (193)
169 3p0r_A Azoreductase; structura 35.7 31 0.001 34.8 4.6 42 77-118 4-48 (211)
170 4gi5_A Quinone reductase; prot 35.3 36 0.0012 36.2 5.1 42 76-118 21-62 (280)
171 3r6w_A FMN-dependent NADH-azor 34.4 29 0.001 34.7 4.1 41 78-118 2-44 (212)
172 1t5b_A Acyl carrier protein ph 34.3 34 0.0012 33.5 4.6 41 78-118 2-44 (201)
173 1ydg_A Trp repressor binding p 34.2 43 0.0015 33.3 5.4 40 77-119 6-45 (211)
174 3qha_A Putative oxidoreductase 33.8 26 0.0009 37.2 3.9 37 74-119 12-48 (296)
175 3kkj_A Amine oxidase, flavin-c 33.7 20 0.00067 35.7 2.7 30 78-116 3-32 (336)
176 1lss_A TRK system potassium up 33.7 24 0.00081 32.1 3.1 31 78-117 5-35 (140)
177 3n6x_A Putative glutathionylsp 33.3 34 0.0012 39.2 4.8 46 251-298 364-411 (474)
178 3qvo_A NMRA family protein; st 31.5 33 0.0011 34.7 4.0 35 76-117 21-56 (236)
179 3cky_A 2-hydroxymethyl glutara 30.2 32 0.0011 36.3 3.8 33 74-115 1-33 (301)
180 4hb9_A Similarities with proba 30.2 28 0.00094 38.1 3.4 30 78-116 2-31 (412)
181 3dhn_A NAD-dependent epimerase 29.5 29 0.001 34.6 3.2 34 75-116 2-35 (227)
182 3llv_A Exopolyphosphatase-rela 29.2 26 0.00089 32.3 2.5 32 78-118 7-38 (141)
183 2hpv_A FMN-dependent NADH-azor 28.9 45 0.0015 33.1 4.4 41 78-118 2-45 (208)
184 3i6i_A Putative leucoanthocyan 28.8 1.7E+02 0.0057 31.2 9.4 32 78-117 11-42 (346)
185 4fs3_A Enoyl-[acyl-carrier-pro 28.5 47 0.0016 34.3 4.7 36 78-118 6-41 (256)
186 4e5v_A Putative THUA-like prot 27.9 1.6E+02 0.0055 31.1 8.7 37 76-115 3-40 (281)
187 1y5e_A Molybdenum cofactor bio 27.9 1.2E+02 0.0042 29.2 7.3 43 76-119 12-54 (169)
188 3zqu_A Probable aromatic acid 27.7 75 0.0026 32.1 5.8 38 74-116 1-38 (209)
189 2gek_A Phosphatidylinositol ma 26.9 56 0.0019 35.4 5.2 44 74-117 17-60 (406)
190 2ewd_A Lactate dehydrogenase,; 26.3 32 0.0011 37.0 2.9 37 74-119 1-38 (317)
191 3tem_A Ribosyldihydronicotinam 26.3 52 0.0018 33.6 4.4 41 78-119 2-42 (228)
192 4b79_A PA4098, probable short- 25.6 59 0.002 33.7 4.6 35 79-120 12-46 (242)
193 4h15_A Short chain alcohol deh 25.1 71 0.0024 33.3 5.2 32 79-117 12-43 (261)
194 3gpi_A NAD-dependent epimerase 24.6 80 0.0027 32.6 5.6 31 78-117 4-34 (286)
195 3f2v_A General stress protein 24.4 45 0.0015 33.2 3.4 37 78-117 2-38 (192)
196 4e12_A Diketoreductase; oxidor 24.2 40 0.0014 35.5 3.1 35 75-118 2-36 (283)
197 1d4a_A DT-diaphorase, quinone 23.7 76 0.0026 33.3 5.2 41 78-119 3-43 (273)
198 1id1_A Putative potassium chan 23.6 50 0.0017 30.9 3.4 32 77-117 3-34 (153)
199 2g1u_A Hypothetical protein TM 23.5 53 0.0018 30.9 3.6 32 77-117 19-50 (155)
200 1bg6_A N-(1-D-carboxylethyl)-L 23.4 37 0.0013 36.7 2.7 33 75-116 2-34 (359)
201 4b4o_A Epimerase family protei 23.2 44 0.0015 35.0 3.2 30 78-115 1-30 (298)
202 4gbj_A 6-phosphogluconate dehy 22.9 91 0.0031 33.1 5.7 34 78-120 6-39 (297)
203 4g6h_A Rotenone-insensitive NA 22.8 55 0.0019 37.6 4.2 34 74-116 39-72 (502)
204 3fwz_A Inner membrane protein 22.8 42 0.0014 31.1 2.6 33 78-119 8-40 (140)
205 3g79_A NDP-N-acetyl-D-galactos 22.7 63 0.0022 37.0 4.6 40 72-120 13-54 (478)
206 1f0k_A MURG, UDP-N-acetylgluco 22.2 86 0.0029 33.4 5.4 35 78-116 7-41 (364)
207 2q62_A ARSH; alpha/beta, flavo 22.1 77 0.0026 32.8 4.8 41 76-117 33-73 (247)
208 3enk_A UDP-glucose 4-epimerase 22.1 57 0.002 34.7 3.9 36 74-117 2-37 (341)
209 3l4b_C TRKA K+ channel protien 22.1 33 0.0011 34.4 1.8 32 78-118 1-32 (218)
210 1t2d_A LDH-P, L-lactate dehydr 22.0 51 0.0017 35.6 3.5 37 74-119 1-38 (322)
211 1e2b_A Enzyme IIB-cellobiose; 22.0 1.1E+02 0.0037 27.3 5.1 31 78-113 4-35 (106)
212 2a5l_A Trp repressor binding p 21.9 86 0.0029 30.5 4.9 39 78-119 6-44 (200)
213 2zbw_A Thioredoxin reductase; 21.9 46 0.0016 35.3 3.1 32 76-116 4-35 (335)
214 3lcm_A SMU.1420, putative oxid 21.9 90 0.0031 30.8 5.0 40 78-119 1-40 (196)
215 2ehd_A Oxidoreductase, oxidore 21.7 71 0.0024 31.9 4.4 32 78-116 5-36 (234)
216 1kut_A Phosphoribosylaminoimid 21.6 1E+02 0.0034 31.7 5.3 47 362-421 136-187 (230)
217 2r60_A Glycosyl transferase, g 21.5 93 0.0032 35.0 5.8 47 72-118 2-59 (499)
218 3m1a_A Putative dehydrogenase; 21.4 68 0.0023 33.2 4.2 34 77-117 4-37 (281)
219 3rp8_A Flavoprotein monooxygen 21.3 55 0.0019 36.0 3.7 32 76-116 22-53 (407)
220 3okp_A GDP-mannose-dependent a 21.1 57 0.002 35.0 3.7 45 74-120 1-45 (394)
221 1fjh_A 3alpha-hydroxysteroid d 21.0 74 0.0025 32.3 4.3 33 78-117 1-33 (257)
222 3fro_A GLGA glycogen synthase; 20.9 1E+02 0.0036 33.4 5.9 43 76-118 1-44 (439)
223 1ydh_A AT5G11950; structural g 20.9 1.2E+02 0.0041 30.7 5.8 37 78-114 10-46 (216)
224 2r9z_A Glutathione amide reduc 20.6 52 0.0018 37.2 3.3 34 74-116 1-34 (463)
225 3i4f_A 3-oxoacyl-[acyl-carrier 20.3 75 0.0026 32.5 4.2 34 76-116 5-38 (264)
226 3fvw_A Putative NAD(P)H-depend 20.1 84 0.0029 30.9 4.4 39 78-118 3-41 (192)
227 3iwt_A 178AA long hypothetical 20.1 2.6E+02 0.009 26.8 8.0 91 74-192 12-111 (178)
No 1
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=100.00 E-value=3.9e-61 Score=545.57 Aligned_cols=341 Identities=26% Similarity=0.357 Sum_probs=276.3
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccc--ccccCCCCCcccccccccc--c--c
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA--QVYSNTPADFDFKLESLAQ--G--F 150 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~--~ 150 (953)
++||+|||||.|+||||||.||++|+++|++.||+|++|+||++|+|+..... .+..+.......+..+... . .
T Consensus 3 kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (357)
T 4fu0_A 3 NKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWFEDSKNLCPVVVSQNRSV 82 (357)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECSCTHHHHTTCGGGCGGGEEEEEECCCTTT
T ss_pred CCEEEEEECCCccchHHHHHHHHHHHHHHhHhCCEEEEEEEeCCCceeecCCCHHHhhcCcchhhhhccccccccccccc
Confidence 46999999999999999999999999999999999999999999999875432 2222111110111111100 0 0
Q ss_pred C-cchhHHH-hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecC
Q 002207 151 G-SLSEFAE-HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG 228 (953)
Q Consensus 151 ~-~~~~~~~-~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~ 228 (953)
. ....... ....++|+|||++||.+||||.+|++||.+||||+||++.++++|+||..+|++|+++|||||++..+..
T Consensus 83 ~~~~~~~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~ 162 (357)
T 4fu0_A 83 KGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKR 162 (357)
T ss_dssp CEEEEC----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEEEEG
T ss_pred cchhhhhhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEeecC
Confidence 0 0000000 1123699999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEE
Q 002207 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
.+.. ..+.++.+ .++||+||||+++|||+||++|++.+|+.+....++ .+++.+|||+||+| +|++|.|++
T Consensus 163 ~~~~-~~~~~~~~-----~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~--~~~~~vlvE~~i~G-~e~~v~vl~ 233 (357)
T 4fu0_A 163 FNEE-AAMKEIEA-----NLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAF--EHDTEVIVEETING-FEVGCAVLG 233 (357)
T ss_dssp GGHH-HHHHHHHH-----HCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHT--TTCSEEEEEECCCS-EEEEEEEEE
T ss_pred CChH-HHHHHHHH-----hcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHh--ccCCeEEEEEecCC-EEEEEEEEe
Confidence 4421 12223222 378999999999999999999999999887766554 47889999999997 999999996
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
++ ...+.++.++.. ...+|+|..||..+. +.+.+|+++++++.++++++|.+++++|||+|++|
T Consensus 234 ~~-----~~~~~~v~~~~~----------~~~~~d~~~k~~~~~-~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~ 297 (357)
T 4fu0_A 234 ID-----ELIVGRVDEIEL----------SSGFFDYTEKYTLKS-SKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSR 297 (357)
T ss_dssp SS-----SEEECCCEEEEE----------CHHHHTSCSBCSSCC-EEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cC-----CceEEEEEEEEc----------ccccccccccccCCC-ceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEE
Confidence 32 244555665543 446999999998765 77889999999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
|||++ +++|++|||||||+||||++|+||++|+++|++|++|+++||+.|++|-
T Consensus 298 VDf~~-----------------~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~aler~ 351 (357)
T 4fu0_A 298 VDMFY-----------------TPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVELE 351 (357)
T ss_dssp EEEEE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHTTC---
T ss_pred EEEEE-----------------eCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHHHHHHhccc
Confidence 99987 6789999999999999999999999999999999999999999999984
No 2
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=100.00 E-value=2.7e-60 Score=540.08 Aligned_cols=345 Identities=25% Similarity=0.376 Sum_probs=266.5
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccccc-ccCCCC-------Cccccccc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQV-YSNTPA-------DFDFKLES 145 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~-~~~~~~-------~~~~~~~~ 145 (953)
|.+||||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+..+.... ...... ...+.+.+
T Consensus 1 ~~~~~~v~vl~GG~S~E~evSl~Sa~~v~~~l~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (372)
T 3tqt_A 1 MAEKLHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDHLVKEGSARPITIAF 80 (372)
T ss_dssp -CCSEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECCHHHHHHSCHHHHHHHTCSEEEEECT
T ss_pred CCCCCEEEEEeccCCCccHhHHHHHHHHHHHHhhcCceEEEEEECCCCCEEeccchhhhhccccccccccccccceeecc
Confidence 5677899999999999999999999999999999999999999999999986443211 000000 00000100
Q ss_pred c--ccccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCe
Q 002207 146 L--AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223 (953)
Q Consensus 146 ~--~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~ 223 (953)
. ...+..... .....++|+|||++||.+||||++|++||.+||||+|+++.++++||||..+|++|+++|||+|++
T Consensus 81 ~~~~~~~~~~~~--~~~~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~ 158 (372)
T 3tqt_A 81 GDAAKPWQSLNG--DGRRYSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDW 158 (372)
T ss_dssp TCSSCCEEEC------CEECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCC
T ss_pred cccccceeeccc--cccccCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCE
Confidence 0 000000000 001137999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccchhhhhhhhhhcCCCCCCCc-EEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 224 FLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~P-vvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
..+...+.....+..+.+ .++|| +||||+++|||+||++|++.+|+.+++..++ .++..+|||+||+| +|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~-----~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~--~~~~~vlVEe~I~G-~E~ 230 (372)
T 3tqt_A 159 HTLSPRDATEGVYQRLLD-----RWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRG-REI 230 (372)
T ss_dssp EEECTTSCCTTHHHHHHH-----HC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHT--TTCSCEEEEECCCS-EEE
T ss_pred EEEechhhhhhHHHHHHH-----hcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHH--hcCCCEEEECCCCC-EEE
Confidence 999876532111222222 36889 9999999999999999999999887766554 47889999999997 999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+|.|++++ .+.+++++|+.. ..+||||++||..+..+.+.+|+++++++.++++++|.+++++||
T Consensus 231 ~v~vl~~~-----~~~~~~~~ei~~----------~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 295 (372)
T 3tqt_A 231 ECAVLGNG-----APKASLPGEIIP----------HHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVH 295 (372)
T ss_dssp EEEEEESS-----SCEECCCEEEEC----------C---------------CEEESCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCC-----CceEeeeEEEec----------CCCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999632 356777887753 456999999998654367889999999999999999999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
|+|++||||++ +++|++||+||||+||||++|+||++++++|++|.+|+.+||+.|++|+.
T Consensus 296 ~~G~~rvDf~~-----------------~~dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~r~~ 356 (372)
T 3tqt_A 296 CSGMARVDFFV-----------------TPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAIDRHQ 356 (372)
T ss_dssp CCEEEEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEE-----------------eCCCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 99999999987 56799999999999999999999999999999999999999999999864
No 3
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=100.00 E-value=1.1e-58 Score=528.52 Aligned_cols=337 Identities=27% Similarity=0.380 Sum_probs=256.6
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccc--ccc-ccccccCc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDF--KLE-SLAQGFGS 152 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~ 152 (953)
++|||+|||||.|+||||||.||++|+++|++.||+|++++++++|.|+..............+.. ... ... ..
T Consensus 36 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 112 (383)
T 3k3p_A 36 SKETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQK--IK- 112 (383)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGE--EC-
T ss_pred cCCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEeccccccccccccccccccccccccc--cc-
Confidence 356999999999999999999999999999999999999999999999864322110000000000 000 000 00
Q ss_pred chhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCC-CCCCCeEEecCCcc
Q 002207 153 LSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQG-FITVPSFLLQGSEV 231 (953)
Q Consensus 153 ~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~G-iptp~~~~~~~~~~ 231 (953)
...+ ..++|+|||++||.+||||++|++||.+||||+|+++.++++|+||..+|++|+++| ||+|+++.+...+.
T Consensus 113 ~~~~----~~~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~ 188 (383)
T 3k3p_A 113 PSDI----YEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEGEP 188 (383)
T ss_dssp GGGG----CCTTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEEETTSC
T ss_pred cccc----ccCCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEEeCccc
Confidence 0001 137999999999999999999999999999999999999999999999999999999 99999999987542
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
....+.++.+ .++||+||||++++||+||++|++.+|+.+++..++. ++..+|||+||+| +|++|.|+++
T Consensus 189 ~~~~~~~~~~-----~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~--~~~~vlVEe~I~G-~E~~v~vl~d-- 258 (383)
T 3k3p_A 189 LESKLAEVEE-----KLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALK--YDSRVLIEQGVDA-REIEVGILGN-- 258 (383)
T ss_dssp HHHHHHHHHH-----HCCSSEEEEECC------CEEESSHHHHHHHHHHHHH--HCSEEEEEECCCS-EEEEEEEEES--
T ss_pred hhHHHHHHHH-----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh--CCCeEEEEcCCCC-eEEEEEEEeC--
Confidence 2122333332 3678999999999999999999999998877666553 6789999999997 9999999963
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+.+.+++++|+.. ...||||++||..+. +.+.+|+.+++++.+++++.|.+++++|||+|++||||
T Consensus 259 ---~~~~~~~~~ei~~----------~~~~~d~~~ky~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf 324 (383)
T 3k3p_A 259 ---TDVKTTLPGEIVK----------DVAFYDYEAKYIDNK-ITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDF 324 (383)
T ss_dssp ---SSCEECCCEEEC----------------------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ---CCeeEEeeEEEec----------CCCccchhhcccCCC-eeEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEE
Confidence 2356677777642 457999999998654 67889999999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
++ +++|++||+||||+||||++|+||++++++|++|.+|+.++|+.|++|++
T Consensus 325 ~~-----------------~~~g~~~vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r~~ 376 (383)
T 3k3p_A 325 FL-----------------TEDGKVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLAKEMFD 376 (383)
T ss_dssp EE-----------------CTTCCEEEEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EE-----------------ECCCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 87 57899999999999999999999999999999999999999999999864
No 4
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1e-58 Score=528.00 Aligned_cols=347 Identities=25% Similarity=0.305 Sum_probs=269.9
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccc--cccCC---CCC-----cccccc-
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQ--VYSNT---PAD-----FDFKLE- 144 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~--~~~~~---~~~-----~~~~~~- 144 (953)
+|+||+|||||.|+|||||+.||++|+++|++.+|+|++++|+++|.|+..+... +.... +.. ..+.+.
T Consensus 9 ~~~~v~vl~GG~S~E~~vS~~sa~~v~~~l~~~~~~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
T 3lwb_A 9 RRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQVKSGSGTELALPA 88 (373)
T ss_dssp TCEEEEEEEEC-----CHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECCC--------------------------
T ss_pred CCcEEEEEecCCCCChhhHHHHHHHHHHHhhhcCceEEEEEecCCCCeEecCchhhhhhcccccccccccccccceEeec
Confidence 5679999999999999999999999999999999999999999999999754311 10000 000 000010
Q ss_pred -ccccccCcchhHH-HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCC
Q 002207 145 -SLAQGFGSLSEFA-EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222 (953)
Q Consensus 145 -~~~~~~~~~~~~~-~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~ 222 (953)
+....+....... .....++|+|||++||.+||||++|++||.+||||+|+++.++++|+||..+|++|+++|||+|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~ 168 (373)
T 3lwb_A 89 DPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGA 168 (373)
T ss_dssp --------CCCCTTHHHHHHTCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCC
T ss_pred cccccceeeccccccccccCCccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCC
Confidence 0000000000000 00012699999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 223 SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
+..+...+.... . ... ..++||+||||++++||+||++|++.+|+.+++..++ .++..+|||+||+| +|+
T Consensus 169 ~~~~~~~~~~~~-~-~~~-----~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~--~~~~~vlVEe~I~G-~E~ 238 (373)
T 3lwb_A 169 YAVLRPPRSTLH-R-QEC-----ERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISG-REL 238 (373)
T ss_dssp EEEECTTCCCCC-H-HHH-----HHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHH--TTCSSEEEEECCEE-EEE
T ss_pred EEEEECcccchh-H-HHH-----HhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCCEEEeCCCCC-eEE
Confidence 999987653110 0 011 1267899999999999999999999999877766654 37889999999997 999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCc----ccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHH
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDA----IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLF 378 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~----~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~ 378 (953)
+|.|++++ ...+.+++++|+.... ... ||+|+.||..+. +.+.+|+++++++.++++++|.+++
T Consensus 239 ~v~vl~~~---~~~~~~~~~~ei~~~~--------~~~~~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~ 306 (373)
T 3lwb_A 239 ECGVLEMP---DGTLEASTLGEIRVAG--------VRGREDSFYDFATKYLDDA-AELDVPAKVDDQVAEAIRQLAIRAF 306 (373)
T ss_dssp EEEEEECT---TSCEEECCCEEEECCS--------TTCSEESSSCHHHHHTCTT-CEEESSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECC---CCceEEeeeeEEEccC--------CCCccccccchhhcccCCC-ceEEeCCCCCHHHHHHHHHHHHHHH
Confidence 99999742 1223677888775320 134 999999998765 5788999999999999999999999
Q ss_pred HHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 379 QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 379 ~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++|||+|++||||++ +++|. ||+||||+||||++|+||++++++|++|.+|+.+||+.|++|
T Consensus 307 ~aLg~~G~~~vDf~~-----------------~~dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r 368 (373)
T 3lwb_A 307 AAIDCRGLARVDFFL-----------------TDDGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLAR 368 (373)
T ss_dssp HHTTCCSEEEEEEEE-----------------ETTEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHhCCccEEEEEEEE-----------------ECCCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 999999999999987 56788 999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 002207 459 FPNL 462 (953)
Q Consensus 459 ~~~~ 462 (953)
+..+
T Consensus 369 ~~~~ 372 (373)
T 3lwb_A 369 GVGL 372 (373)
T ss_dssp ----
T ss_pred hhcc
Confidence 7543
No 5
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=100.00 E-value=7.9e-59 Score=531.03 Aligned_cols=348 Identities=26% Similarity=0.361 Sum_probs=265.5
Q ss_pred hcCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccccccc--CCCC-------Ccccc
Q 002207 72 ARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTPA-------DFDFK 142 (953)
Q Consensus 72 ~~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~--~~~~-------~~~~~ 142 (953)
.+| ++|||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+......... .... ...+.
T Consensus 18 ~~m-~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
T 3e5n_A 18 GHM-RKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVA 96 (386)
T ss_dssp ----CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEE
T ss_pred hhc-CCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhcccccccccccccccccee
Confidence 456 4689999999999999999999999999999999999999999999998754321100 0000 00010
Q ss_pred ccccccccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCC
Q 002207 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222 (953)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~ 222 (953)
+.+.................++|+|||++||.+||||++|++||.+||||+|+++.++++|+||..+|++|+++|||+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~ 176 (386)
T 3e5n_A 97 LLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAP 176 (386)
T ss_dssp ECTTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCC
T ss_pred eccCccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCC
Confidence 11100000000000011234799999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 223 SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
+..+...+....++.++.+ .++||+||||++++||+||++|++.+|+.+++..++ .++..+|||+||+| +|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~-----~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~--~~~~~vlVEe~I~G-~E~ 248 (386)
T 3e5n_A 177 FVCFDRHTAAHADVDTLIA-----QLGLPLFVKPANQGSSVGVSQVRTADAFAAALALAL--AYDHKVLVEAAVAG-REI 248 (386)
T ss_dssp EEEEEHHHHTTCCHHHHHH-----HHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHT--TTCSEEEEEECCCS-EEE
T ss_pred EEEEeCcccchhhHHHHHH-----hcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHH--hCCCcEEEEcCCCC-eEE
Confidence 9998764311111222222 257899999999999999999999999887776654 47889999999998 999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+|.|+++ . .+.+++++|+.. ..+||+|+.||..++.+.+.+|+.+++++.++++++|.+++++||
T Consensus 249 ~v~vl~~----~-~~~~~~~gei~~----------~~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 313 (386)
T 3e5n_A 249 ECAVLGN----A-VPHASVCGEVVV----------HDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALG 313 (386)
T ss_dssp EEEEECS----S-SCEEEEEEEECC---------------------------CEESSCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeC----C-CceEEEeEEEEe----------CCcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999953 2 255667777642 345999999998755467889999999999999999999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
|+|++||||++ +++|++||+||||+||||++|+||++++++|++|.+|+.+||+.|++|+.
T Consensus 314 ~~G~~~vDf~~-----------------~~dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~li~~a~~r~~ 374 (386)
T 3e5n_A 314 CAGMARVDVFL-----------------CADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELALERHT 374 (386)
T ss_dssp CCSEEEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEE-----------------ECCCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence 99999999987 67889999999999999999999999999999999999999999999853
No 6
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=100.00 E-value=2.8e-58 Score=522.06 Aligned_cols=350 Identities=25% Similarity=0.353 Sum_probs=272.7
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|+|+||+|||||.|+||||||+||++|+++|++ .+|+|++|+|+++|.|+....... ....+.|.
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~-~gy~v~~i~i~~~g~~~~~~~~~~----~~~~~~~~---------- 65 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINT-NKFDIIPIGITRSGEWYHYTGEKE----KILNNTWF---------- 65 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTCCEEEECSCTH----HHHTTCGG----------
T ss_pred CCCCEEEEEECCCccchHHHHHHHHHHHHHHhH-hCCEEEEEEEeCCCceeecCCCHH----HhhcCcch----------
Confidence 568899999999999999999999999999975 899999999999987764321100 00000000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
.+.. ...+. .+.......++. +. ..+ ......+|+|||++||+.||
T Consensus 66 -~~~~-----~~~~~------------------~~~~~~~~~~~~--~~------~~~--~~~~~~~D~vf~~l~G~~gE 111 (357)
T 4fu0_A 66 -EDSK-----NLCPV------------------VVSQNRSVKGFL--EI------ASD--KYRIIKVDLVFPVLHGKNGE 111 (357)
T ss_dssp -GCGG-----GEEEE------------------EECCCTTTCEEE--EC------------CEEEECSEEEECCCSHHHH
T ss_pred -hhhh-----ccccc------------------cccccccccchh--hh------hhh--hHhhcCCCEEEECCcCcccc
Confidence 0000 00000 000000000000 00 000 01234689999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+||||+||++.++++||||..||++ |+++|||||++..+...+. ...++++.+++ +||+||
T Consensus 112 dg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~-----~~~~~~~~~~l-g~PvvV 182 (357)
T 4fu0_A 112 DGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKL---VSLAGISVPKSVTFKRFNE-----EAAMKEIEANL-TYPLFI 182 (357)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCBCCCEEEEEGGGH-----HHHHHHHHHHC-CSSEEE
T ss_pred CHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHH---HHHCCCCCCCEEeecCCCh-----HHHHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 9999999999999876542 23355667789 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++|||.||++|++.++|.. +++.++.+ ++.+|+|+||+|+
T Consensus 183 KP~~gg~s~Gv~~v~~~~el~~---~~~~a~~~-------------------~~~vlvE~~i~G~--------------- 225 (357)
T 4fu0_A 183 KPVRAGSSFGITKVIEKQELDA---AIELAFEH-------------------DTEVIVEETINGF--------------- 225 (357)
T ss_dssp EETTCSSSTTCEEESSHHHHHH---HHHHHTTT-------------------CSEEEEEECCCSE---------------
T ss_pred EECCCCCCCceEEeccHHhHHH---HHHHHhcc-------------------CCeEEEEEecCCE---------------
Confidence 9999999999999999999885 67777654 6889999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.|+++.... ..+..+......+|+|+.||..+.+...+|++ +++++.++++++|.+++++|
T Consensus 226 ----------e~~v~vl~~~~~~--~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~---l~~~~~~~i~~~A~~~~~aL 290 (357)
T 4fu0_A 226 ----------EVGCAVLGIDELI--VGRVDEIELSSGFFDYTEKYTLKSSKIYMPAR---IDAEAEKRIQEAAVTIYKAL 290 (357)
T ss_dssp ----------EEEEEEEESSSEE--ECCCEEEEECHHHHTSCSBCSSCCEEEESSCS---CCHHHHHHHHHHHHHHHHHT
T ss_pred ----------EEEEEEEecCCce--EEEEEEEEcccccccccccccCCCceEecCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999876433 33344455566799999999988888888887 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
||+|++|||||+++ +|++|||||||+||||++|.+|++|.++ |..| .+|+++||++|++|
T Consensus 291 g~~G~~~VDf~~~~-dg~~~vlEvNt~PG~t~~S~~p~~~~~~-G~~~-~~li~~li~~aler 350 (357)
T 4fu0_A 291 GCSGFSRVDMFYTP-SGEIVFNEVNTIPGFTSHSRYPNMMKGI-GLSF-SQMLDKLIGLYVEL 350 (357)
T ss_dssp TCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHTT-TCCH-HHHHHHHHHTTC--
T ss_pred CCcceEEEEEEEeC-CCCEEEEEEeCCCCCCcccHHHHHHHHh-CcCH-HHHHHHHHHHHhcc
Confidence 99999999999985 7999999999999999999888887765 4566 59999999999988
No 7
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=100.00 E-value=1.9e-57 Score=516.58 Aligned_cols=345 Identities=25% Similarity=0.362 Sum_probs=277.5
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccccccc--CCCCCccc-------ccccc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYS--NTPADFDF-------KLESL 146 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~--~~~~~~~~-------~~~~~ 146 (953)
++|||+|||||.|+||||||.||++|+++|++.||+|++++|+++|.|+..+...... ..+..... .+.+.
T Consensus 2 ~~~~v~vl~GG~S~E~evSl~S~~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (364)
T 3i12_A 2 AKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPG 81 (364)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECSSSSBSSTTCTTTCCBCCCSCBEEECTT
T ss_pred CccEEEEEeccCCCCccchHHHHHHHHHHHhhcCCeEEEEEECCCCCEEecccchhhhccccccccccccccccceeccc
Confidence 3579999999999999999999999999999999999999999999998643321110 01111000 00000
Q ss_pred ccccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe
Q 002207 147 AQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL 226 (953)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~ 226 (953)
................++|+|||++||.+||||++|++||.+||||+|+++.++++|+||..+|++|+++|||+|++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~ 161 (364)
T 3i12_A 82 KHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITL 161 (364)
T ss_dssp CSSSCEEETTTCCBCCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEE
T ss_pred ccccceeccccccccCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEE
Confidence 00000000000001347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEE
Q 002207 227 QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 306 (953)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~V 306 (953)
.+.+....++.++.+ .++||+||||++++||+||++|++.+|+.+++..++. ++..+|||+||+| +|++|.|
T Consensus 162 ~~~~~~~~~~~~~~~-----~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~--~~~~vlVEe~I~G-~E~~v~v 233 (364)
T 3i12_A 162 TRTNRHAFSFAEVES-----RLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFE--FDHKVVVEQGIKG-REIECAV 233 (364)
T ss_dssp ETTTGGGCCHHHHHH-----HHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHH--HCSEEEEEECCCS-EEEEEEE
T ss_pred EccccchhhHHHHHH-----hcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHh--cCCcEEEEcCcCC-eEEEEEE
Confidence 875411111222222 2578999999999999999999999998877666553 5789999999998 9999999
Q ss_pred EEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 307 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 307 l~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
++++ .+.+++++|+.. ...||+|..||..+..+.+.+|+.+++++.+++++.|.+++++|||+|+
T Consensus 234 l~~~-----~~~~~~~~ei~~----------~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~ 298 (364)
T 3i12_A 234 LGND-----NPQASTCGEIVL----------NSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGM 298 (364)
T ss_dssp EESS-----SCEEEEEEEEEC----------CTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EeCC-----CceEeeeEEEec----------CCCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceE
Confidence 9632 256677777752 4569999999986554678899999999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
+||||++ +++|++||+||||+||||++|+||++++++|++|.+|+.+||+.|++|+.
T Consensus 299 ~~vD~~~-----------------~~~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~li~~a~~~~~ 355 (364)
T 3i12_A 299 ARVDVFL-----------------TADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERHT 355 (364)
T ss_dssp EEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE-----------------ecCCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHHHHHHHHHHh
Confidence 9999986 67899999999999999999999999999999999999999999998853
No 8
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=100.00 E-value=5.6e-56 Score=501.26 Aligned_cols=337 Identities=23% Similarity=0.305 Sum_probs=265.8
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc--cccCcc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA--QGFGSL 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 153 (953)
.+|||+|||||.|+||||||.||++|+++|++.||+|+++++++++.|+..................+.... ..+...
T Consensus 2 ~~~~v~vl~GG~s~e~~vSl~sa~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T 3se7_A 2 SHMKIGIIFGGVSEEHDISVKSAREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVL 81 (346)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEE
T ss_pred CCCEEEEEeeecCCCccHHHHHHHHHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceec
Confidence 468999999999999999999999999999999999999999999999865432111000000000000000 000000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.. ......++|+|||++||.+||||.+|++||.+||||+|+++.++++|+||..+|++|+++|||+|++..+.+.+.
T Consensus 82 ~~-~~~~~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~-- 158 (346)
T 3se7_A 82 EQ-GKYETIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTVTADEK-- 158 (346)
T ss_dssp ET-TEEEEEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEEETTSC--
T ss_pred cc-ccccccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEcCcHH--
Confidence 00 000124799999999999999999999999999999999999999999999999999999999999999877541
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
.. ...++||+||||++++||+||++|++.+|+.++...++ .++..+|||+||+| +|++|.+++++
T Consensus 159 ----~~-----~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~--~~~~~vlvEe~I~G-~E~~v~vl~~~--- 223 (346)
T 3se7_A 159 ----IP-----TDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAR--EYDSKVLIEEAVIG-TEIGCAVMGNG--- 223 (346)
T ss_dssp ----CC-----TTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHT--TTCSEEEEEECCCS-EEEEEEEEEET---
T ss_pred ----HH-----HHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHH--hCCCcEEEEeCcCC-EEEEEEEEecC---
Confidence 11 12478999999999999999999999999887766654 36789999999997 99999999742
Q ss_pred ccccEEecceEEEEeccCccccccCCccccc----ccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNY----RRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy----~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
+.+.++++.++.. .+.|||| +.||..+. +.+.+|+++++++.+++++.|.+++++|||+|++||
T Consensus 224 -~~~~~~~~~e~~~----------~~~~~d~~q~~~~ky~~~~-~~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~v 291 (346)
T 3se7_A 224 -PELITGEVDQITL----------SHGFFKIHQESTPESGSDN-SAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRV 291 (346)
T ss_dssp -TEEEECCCEEECC----------C--------------CGGG-SCEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred -CCeEEEeeEEEec----------CCCCcCcccchhccccCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 2345667776542 4579999 99998654 567899999999999999999999999999999999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
||++ +++|++||+||||+||||++|+||++++++|++|.+++.+||+.|++|+
T Consensus 292 D~~~-----------------~~~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~li~~a~~~~ 344 (346)
T 3se7_A 292 DLFL-----------------TEDGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRLVSLALAGK 344 (346)
T ss_dssp EEEE-----------------CTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred EEEE-----------------eCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 9986 5778999999999999999999999999999999999999999999885
No 9
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=100.00 E-value=3.3e-56 Score=506.44 Aligned_cols=352 Identities=22% Similarity=0.287 Sum_probs=258.3
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
+.|+||+|||||.|+||||||.||++|+.+|+. ++|+|+||+|+++|.|...... ...|. .
T Consensus 2 ~~~~~v~vl~GG~S~E~evSl~Sa~~v~~~l~~-~~~~v~~i~i~~~~~~~~~~~~---------~~~~~---------~ 62 (372)
T 3tqt_A 2 AEKLHISVLCGGQSTEHEISIQSAKNIVNTLDA-AKYLISVIFIDHVGRWYLIDQP---------EMFLA---------H 62 (372)
T ss_dssp CCSEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEECCH---------HHHHH---------S
T ss_pred CCCCEEEEEeccCCCccHhHHHHHHHHHHHHhh-cCceEEEEEECCCCCEEeccch---------hhhhc---------c
Confidence 467899999999999999999999999999975 8999999999998766532110 00000 0
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
... ...+.... ..+ .+.+..-...+. .+.+ ......+|+|||++||.+||
T Consensus 63 ~~~-----~~~~~~~~--------~~~------~l~~~~~~~~~~---------~~~~--~~~~~~~D~vf~~lhG~~gE 112 (372)
T 3tqt_A 63 SPD-----HLVKEGSA--------RPI------TIAFGDAAKPWQ---------SLNG--DGRRYSADCVFPMVHGTQGE 112 (372)
T ss_dssp CHH-----HHHHHTCS--------EEE------EECTTCSSCCEE---------EC------CEECCSEEEECCCSTTTT
T ss_pred ccc-----cccccccc--------cce------eeccccccccee---------eccc--cccccCCCEEEEcCCCCCCc
Confidence 000 00000000 000 000000000000 0000 00124689999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCc-EE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-LC 727 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~P-lv 727 (953)
||++|++||.+||||+||++.++++||||..||++ |+++|||||++..+.+.+.. ...+.++.+.+ +|| +|
T Consensus 113 dg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~----~~~~~~~~~~l-g~P~vv 184 (372)
T 3tqt_A 113 DGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTV---LRAGGIPVVDWHTLSPRDAT----EGVYQRLLDRW-GTSELF 184 (372)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHH---HHHTTCCBCCCEEECTTSCC----TTHHHHHHHHC----CEE
T ss_pred CHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHH---HHHCCcCCCCEEEEechhhh----hhHHHHHHHhc-CCCeEE
Confidence 99999999999999999999999999999999999 99999999999999875531 12244556788 699 99
Q ss_pred EecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccch
Q 002207 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807 (953)
Q Consensus 728 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~ 807 (953)
|||+++|||.||++|++.+||.. +++.++.+ +..+|||+||+|+
T Consensus 185 VKP~~ggss~Gv~~v~~~~eL~~---a~~~a~~~-------------------~~~vlVEe~I~G~-------------- 228 (372)
T 3tqt_A 185 VKAVSLGSSVATLPVKTETEFTK---AVKEVFRY-------------------DDRLMVEPRIRGR-------------- 228 (372)
T ss_dssp EEESSCCSGGGEEEECSHHHHHH---HHHHHTTT-------------------CSCEEEEECCCSE--------------
T ss_pred EEECCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCCEEEECCCCCE--------------
Confidence 99999999999999999999885 67776654 6789999999997
Q ss_pred hhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCC-ceeEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 002207 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIELIAN 886 (953)
Q Consensus 808 ~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~-~~~~~P~~~~~l~~~~~~~i~~~a~~~~~ 886 (953)
|++|+|++++. .. ..+..++....+||||++||..+. +...+|++ +++++.++++++|.++++
T Consensus 229 -----------E~~v~vl~~~~-~~-~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~ 292 (372)
T 3tqt_A 229 -----------EIECAVLGNGA-PK-ASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD---LSESVTKQIQQIAIDAFK 292 (372)
T ss_dssp -----------EEEEEEEESSS-CE-ECCCEEEECC---------------CEEESCCC---CCHHHHHHHHHHHHHHHH
T ss_pred -----------EEEEEEEeCCC-ce-EeeeEEEecCCCccchhhcccCCCceEEEeCCC---CCHHHHHHHHHHHHHHHH
Confidence 99999998753 22 345556666678999999999887 78889987 689999999999999999
Q ss_pred HcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 887 ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 887 aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
+|||+|++||||+++. +|++|||||||+||||++|.+++++.++ |..| .+|+.+||++|++|+
T Consensus 293 aLg~~G~~rvDf~~~~-dg~~~vlEINt~PG~t~~S~~p~~~~~~-G~~~-~~li~~li~~a~~r~ 355 (372)
T 3tqt_A 293 MVHCSGMARVDFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEAS-GLPC-PNLLDQLIELAIDRH 355 (372)
T ss_dssp HTTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHHT-TCCH-HHHHHHHHHHHHHHH
T ss_pred HhCCccEEEEEEEEeC-CCcEEEEEEECCCCcCccCHHHHHHHHh-CCCH-HHHHHHHHHHHHHHh
Confidence 9999999999999985 6899999999999999999888888776 4556 599999999999885
No 10
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=1.6e-53 Score=543.07 Aligned_cols=631 Identities=17% Similarity=0.186 Sum_probs=419.9
Q ss_pred cCeEEEEecCC-----CCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 77 VLRVGLICGGP-----SAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 77 ~~kV~vl~GG~-----S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
.+||+|++||. ++|||+ ||++++++|++.||+|+.++.+++ +...... ..|. .++.+... .
T Consensus 7 ~~kIlIig~G~i~ig~a~E~d~---sg~~~~~al~~~G~~vv~v~~~~~--~~~~~~~------~ad~-~~i~p~~~--e 72 (1073)
T 1a9x_A 7 IKSILILGAGPIVIGQACEFDY---SGAQACKALREEGYRVINVNSNPA--TIMTDPE------MADA-TYIEPIHW--E 72 (1073)
T ss_dssp CCEEEEECCCSCBTTBCTHHHH---HHHHHHHHHHHHTCEEEEECSCTT--CGGGCGG------GSSE-EECSCCCH--H
T ss_pred CCEEEEECCCcccccccccccc---hHHHHHHHHHHcCCEEEEEeCCcc--cccCChh------hCcE-EEECCCCH--H
Confidence 36899999986 899998 599999999999999987754332 2111000 0110 11111100 0
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCCchHH----HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGEDGGI----QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GEdg~i----q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
.+..+++ ..++|+|+|.+||..++++.+ +++|+.+|++++|+++.++.+++||..+|++|+++|+|+|++..+.
T Consensus 73 ~i~~i~~--~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~ 150 (1073)
T 1a9x_A 73 VVRKIIE--KERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAH 150 (1073)
T ss_dssp HHHHHHH--HHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEES
T ss_pred HHHHHHH--HhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEC
Confidence 0111111 248999999999988888764 4589999999999999999999999999999999999999999887
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
+.+. +.++.+ .++||+||||..+++|.|+.+|++.+|+.+.+.+.+.......+|||+||+|++|+++.++
T Consensus 151 ~~~e----a~~~~~-----~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~~E~~v~v~ 221 (1073)
T 1a9x_A 151 TMEE----ALAVAA-----DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVV 221 (1073)
T ss_dssp SHHH----HHHHHH-----HHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTSEEEEEEEE
T ss_pred CHHH----HHHHHH-----HcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCCeEEEEEEE
Confidence 6442 333332 2678999999999999999999999998877766655445578999999998789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCC-C
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLC-D 385 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~-G 385 (953)
++.+|+ .+.++. ++ .+++...+ .+ .+....|+. ++++..+++++.+.+++++||++ |
T Consensus 222 ~d~~g~---~v~~~~--~e--------------~~dp~~v~-~g-~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G 280 (1073)
T 1a9x_A 222 RDKNDN---CIIVCS--IE--------------NFDAMGIH-TG-DSITVAPAQTLTDKEYQIMRNASMAVLREIGVETG 280 (1073)
T ss_dssp ECTTCC---EEEEEE--EE--------------ESSCTTSC-GG-GSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSE
T ss_pred EeCCCC---EEEEEE--Ee--------------cccCCccc-cC-cEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccC
Confidence 864432 333222 11 12332222 12 245667985 99999999999999999999999 9
Q ss_pred eeEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH------------
Q 002207 386 FARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII------------ 452 (953)
Q Consensus 386 ~arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li------------ 452 (953)
+++|||++ ++ +|++||+||||+++ .+|. ...+++|+++.++..++.
T Consensus 281 ~~~vdf~~-----------------~~~~g~~~viEiNpR~~--~ss~--l~~~atG~~l~~~~~~~a~G~~l~~~~~~i 339 (1073)
T 1a9x_A 281 GSNVQFAV-----------------NPKNGRLIVIEMNPRVS--RSSA--LASKATGFPIAKVAAKLAVGYTLDELMNDI 339 (1073)
T ss_dssp EEEEEEEE-----------------CTTTCCEEEEEEESSCC--HHHH--HHHHHHSCCHHHHHHHHHTTCCGGGSBCTT
T ss_pred ceEEEEEE-----------------ECCCCCEEEEEecCCCC--ccHH--HHHHHhCCCHHHHHHHHHcCCChHHhhccc
Confidence 99999987 44 68999999998776 3332 233456776544433221
Q ss_pred -HH-HhhhC-CCC--------CCCCC--------c-------c--eec--------------------------------
Q 002207 453 -GH-ACSRF-PNL--------ASYNS--------V-------S--SHL-------------------------------- 472 (953)
Q Consensus 453 -~~-a~~r~-~~~--------~~~~~--------~-------~--~~~-------------------------------- 472 (953)
.. ....| ++. ++.+. . + +.+
T Consensus 340 ~~~~~~a~f~p~~~~v~~~ip~~~~~~~~~~~~~~~~~~~~~G~v~~~g~~~~ea~~ka~~~l~~~~~g~~~~~~~~~~~ 419 (1073)
T 1a9x_A 340 TGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPE 419 (1073)
T ss_dssp TTTCSBSCSCCBCSSEEEEEEECCGGGCTTSCCBCCSSCCCCEEEEEEESSHHHHHHHHHHHSSSSCSSSCCSSCTTCTT
T ss_pred cCccCHHHcccCCCcEEEEcccccccccCCCCcccCCCccCcEEEEEEcCCHHHHHHHHHHhhcccccCcCccccccccc
Confidence 00 00001 000 00000 0 0 000
Q ss_pred -----------------------------------------------------ccccc-----cCCCc------------
Q 002207 473 -----------------------------------------------------PGRSS-----GSKPT------------ 482 (953)
Q Consensus 473 -----------------------------------------------------~~~~~-----~~~~~------------ 482 (953)
++++. .+..+
T Consensus 420 ~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~gf~d 499 (1073)
T 1a9x_A 420 ALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFAD 499 (1073)
T ss_dssp HHHHHHHHHHTCBTTHHHHHHHHHHTTBCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHTTCCH
T ss_pred cHHHHHHHHhCCCccHHHHHHHHHHcCCCHHHHHHhhccCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHcCCCH
Confidence 00000 00000
Q ss_pred --------------------------------------------------cccccC-CCceEEEEecCCCc-----ccce
Q 002207 483 --------------------------------------------------EALNKR-EGIREVFVIFGGDT-----SERQ 506 (953)
Q Consensus 483 --------------------------------------------------~~~~~~-~~~~~v~vl~GG~s-----~E~~ 506 (953)
++.... ..++||+|+.||.+ .|+|
T Consensus 500 ~~ia~~~~~~~~~~~~~r~~~~~~~~~k~vd~~a~e~~~~t~y~y~~y~~~~~~~~~~~~~kVlVlG~G~~riG~~~Efd 579 (1073)
T 1a9x_A 500 ARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFD 579 (1073)
T ss_dssp HHHHHHTTSCHHHHHHHHHHTTCCCEEEECCSBTTSSCCCCEEEEEESCSCCCCCCCSSSCEEEEECCCSCBTTBCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCCceEEEeCCccccCcCCCceEEEEECCCccccccccCcEEEEecCCccccccccccc
Confidence 000000 24678999998874 7888
Q ss_pred eccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchhhHHHHhhhhcCccccc
Q 002207 507 VSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAA 586 (953)
Q Consensus 507 vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (953)
.|+..+ ..+|++ .+|+++.+..+++ +.+.+ ....+..+..
T Consensus 580 ~~~~~~---~~al~~-~G~~vi~v~~np~--~~s~~-------~~~ad~~~~~--------------------------- 619 (1073)
T 1a9x_A 580 YCCVHA---SLALRE-DGYETIMVNCNPE--TVSTD-------YDTSDRLYFE--------------------------- 619 (1073)
T ss_dssp HHHHHH---HHHHHH-TTCEEEEECCCTT--SSTTS-------TTSSSEEECC---------------------------
T ss_pred hhHHHH---HHHHHh-cCCEEEEEecCCc--ccccc-------cccccEEEec---------------------------
Confidence 887766 467764 6888876533221 11100 0000111100
Q ss_pred cccccccceeccccccccccccccccccccCCCCccChHHHHHH-hhcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeC
Q 002207 587 FTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTG 665 (953)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G 665 (953)
+.+.+++.+. .++.+|.|++.++|.... .++..|+.+|+|++|
T Consensus 620 ----------------------------------p~~~e~v~~i~~~e~~d~Vi~~~g~~~~~--~la~~Le~~Gi~i~G 663 (1073)
T 1a9x_A 620 ----------------------------------PVTLEDVLEIVRIEKPKGVIVQYGGQTPL--KLARALEAAGVPVIG 663 (1073)
T ss_dssp ----------------------------------CCSHHHHHHHHHHHCCSEEECSSSTHHHH--TTHHHHHHTTCCBCS
T ss_pred ----------------------------------cchhhhhhhhhhhcCcceEEeecCCchHH--HHHHHHHHCCCCeeC
Confidence 0111222222 235679999887664333 578899999999999
Q ss_pred CChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc
Q 002207 666 PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 745 (953)
Q Consensus 666 ~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~ 745 (953)
+++.++.+|+||..++++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||+.+++|.||.+|++.
T Consensus 664 ~~~~ai~~~~DK~~~~~l---l~~~GIp~P~~~~~~s~e--------ea~~~~~~i-g~PvvVKP~~~~gG~Gv~iv~~~ 731 (1073)
T 1a9x_A 664 TSPDAIDRAEDRERFQHA---VERLKLKQPANATVTAIE--------MAVEKAKEI-GYPLVVRASYVLGGRAMEIVYDE 731 (1073)
T ss_dssp SCHHHHHHHHSHHHHHHH---HHHHTCCCCCEEECCSHH--------HHHHHHHHH-CSSEEEEC-------CEEEECSH
T ss_pred CCHHHHHHhhCHHHHHHH---HHHcCcCCCCceEECCHH--------HHHHHHHHc-CCCEEEEECCCCCCCCeEEECCH
Confidence 999999999999999999 899999999998876532 234556678 69999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEE
Q 002207 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI 825 (953)
Q Consensus 746 ~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl 825 (953)
++|.. +++.++.. ..+..+|||+||+|. +|++|.++
T Consensus 732 ~el~~---~~~~a~~~-----------------~~~~~vlvEefI~g~------------------------~E~~V~~l 767 (1073)
T 1a9x_A 732 ADLRR---YFQTAVSV-----------------SNDAPVLLDHFLDDA------------------------VEVDVDAI 767 (1073)
T ss_dssp HHHHH---HHHHCC-------------------------EEEBCCTTC------------------------EEEEEEEE
T ss_pred HHHHH---HHHHHHhh-----------------CCCCcEEEEEccCCC------------------------cEEEEEEE
Confidence 99886 45544322 114689999999996 59999999
Q ss_pred cCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCC
Q 002207 826 GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 905 (953)
Q Consensus 826 ~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g 905 (953)
.+++.. .+.+..+.... .+++.|.+...+|+.. ++++..+++++.+++++++||+.|+++|||+++ +|
T Consensus 768 ~d~~~v-~~~~i~e~~~~-------~g~~~gd~~~~~P~~~--l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~--~~ 835 (1073)
T 1a9x_A 768 CDGEMV-LIGGIMEHIEQ-------AGVHSGDSACSLPAYT--LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK--NN 835 (1073)
T ss_dssp ECSSCE-EEEEEEEESSC-------TTSCGGGCCEEESCSS--CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC--SS
T ss_pred EECCeE-EEEeeEEEEec-------cCCccCCceEEecCCC--CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE--CC
Confidence 876543 23333333221 2344455566777642 789999999999999999999999999999996 58
Q ss_pred cEEEEeeCCCCCC
Q 002207 906 EVLIIEVNTVPGM 918 (953)
Q Consensus 906 ~~~viEINt~PGl 918 (953)
++||||||++|+-
T Consensus 836 ~~~viEvNpR~~~ 848 (1073)
T 1a9x_A 836 EVYLIEVNPRAAR 848 (1073)
T ss_dssp CEEEEEEECSCCT
T ss_pred eEEEEEEECCCcc
Confidence 8999999999984
No 11
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.6e-55 Score=498.80 Aligned_cols=354 Identities=23% Similarity=0.294 Sum_probs=265.5
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
+.|+||+|||||+|+||||||+||.+|+.+|+ .++|+|+||+|+++|.|+....+. ..|..... .
T Consensus 8 ~~~~~v~vl~GG~S~E~~vS~~sa~~v~~~l~-~~~~~v~~i~i~~~g~w~~~~~~~---------~~~~~~~~-----~ 72 (373)
T 3lwb_A 8 DRRVRVAVVFGGRSNEHAISCVSAGSILRNLD-SRRFDVIAVGITPAGSWVLTDANP---------DALTITNR-----E 72 (373)
T ss_dssp TTCEEEEEEEEC-----CHHHHHHHHHHHHSC-TTTEEEEEEEECTTCCEEEECCC------------------------
T ss_pred cCCcEEEEEecCCCCChhhHHHHHHHHHHHhh-hcCceEEEEEecCCCCeEecCchh---------hhhhcccc-----c
Confidence 57889999999999999999999999999997 489999999999998888543220 01100000 0
Q ss_pred hhhHHHH-hhh-hcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCC
Q 002207 569 TEEVLAA-CIE-AIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGI 646 (953)
Q Consensus 569 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~ 646 (953)
...+... ... .+.+. . ...+.. +... .... .....+|+|||++||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~-----------------~--~~~~~~----~~~~-------~~~~-~~~~~~D~vfp~lhG~~ 121 (373)
T 3lwb_A 73 LPQVKSGSGTELALPAD-----------------P--RRGGQL----VSLP-------PGAG-EVLESVDVVFPVLHGPY 121 (373)
T ss_dssp -----------------------------------------------CCCC-------TTHH-HHHHTCSEEEECCEETT
T ss_pred ccccccccccceEeecc-----------------c--ccccee----eccc-------cccc-cccCCccEEEECCCCCC
Confidence 0000000 000 00000 0 000000 0000 0000 01125899999999999
Q ss_pred CCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcE
Q 002207 647 GEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 726 (953)
Q Consensus 647 GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Pl 726 (953)
||||+||++||.+||||+||++.++++||||..||++ |+++|||+|++..+.+.+.... ....+.+ +||+
T Consensus 122 gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~~~------~~~~~~l-g~Pv 191 (373)
T 3lwb_A 122 GEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKL---LAADGLPVGAYAVLRPPRSTLH------RQECERL-GLPV 191 (373)
T ss_dssp EECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHH---HHHTTCCBCCEEEECTTCCCCC------HHHHHHH-CSCE
T ss_pred CccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHH---HHHcCcCCCCEEEEECcccchh------HHHHHhc-CCCE
Confidence 9999999999999999999999999999999999999 9999999999999987653110 1124567 6999
Q ss_pred EEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccc
Q 002207 727 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 806 (953)
Q Consensus 727 vVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~ 806 (953)
||||++++||.||++|++.+||.. +++.++++ +..+|||+||+|+
T Consensus 192 vVKP~~ggss~GV~~v~~~~eL~~---a~~~a~~~-------------------~~~vlVEe~I~G~------------- 236 (373)
T 3lwb_A 192 FVKPARGGSSIGVSRVSSWDQLPA---AVARARRH-------------------DPKVIVEAAISGR------------- 236 (373)
T ss_dssp EEEESBCSTTTTCEEECSGGGHHH---HHHHHHTT-------------------CSSEEEEECCEEE-------------
T ss_pred EEEeCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCCEEEeCCCCCe-------------
Confidence 999999999999999999999985 67777655 6789999999997
Q ss_pred hhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecC--Cc----cccccccccCCCceeEcCCCCCCCCHHHHHHHHHH
Q 002207 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES--GD----ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQR 880 (953)
Q Consensus 807 ~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~--~~----~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~ 880 (953)
|++|.++++++....+.+..++... .+ ||+|+.||..+.+..++|++ +++++.++++++
T Consensus 237 ------------E~~v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~---l~~~~~~~i~~~ 301 (373)
T 3lwb_A 237 ------------ELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK---VDDQVAEAIRQL 301 (373)
T ss_dssp ------------EEEEEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC---CCHHHHHHHHHH
T ss_pred ------------EEEEEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCC---CCHHHHHHHHHH
Confidence 9999999886542223444555544 55 99999999988777888987 689999999999
Q ss_pred HHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 881 IELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 881 a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|.+++++|||+|++|||||++. +|+ |||||||+||||+.|.+++++.+. |..| .+|+.+||++|++|+
T Consensus 302 a~~~~~aLg~~G~~~vDf~~~~-dg~-~vlEIN~~PG~t~~S~~p~~~~a~-Gi~~-~~li~~li~~a~~r~ 369 (373)
T 3lwb_A 302 AIRAFAAIDCRGLARVDFFLTD-DGP-VINEINTMPGFTTISMYPRMWAAS-GVDY-PTLLATMIETTLARG 369 (373)
T ss_dssp HHHHHHHTTCCSEEEEEEEEET-TEE-EEEEEESSCCCSTTSHHHHHHHHT-TCCH-HHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCccEEEEEEEEEC-CCC-EEEEecCCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHHhhh
Confidence 9999999999999999999995 688 999999999999999888877755 4556 599999999999986
No 12
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=100.00 E-value=1.6e-54 Score=494.14 Aligned_cols=340 Identities=23% Similarity=0.348 Sum_probs=248.9
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.++||+|||||.|+||||||.||++|+++|+. .+|+|++|+|++++.|+........ + ...+.|.
T Consensus 35 m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~~g~~~~~~~~~~~-~--~~~~~~~---------- 100 (383)
T 3k3p_A 35 MSKETLVLLYGGRSAERDVSVLSAESVMRAINY-DNFLVKTYFITQAGDFIKTQEFDSQ-P--SETDKLM---------- 100 (383)
T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEEEEESSC-C--C--CCCC----------
T ss_pred ccCCeEEEEeCCCCCcchHHHHHHHHHHHHhhh-cCCEEEEEEecCCCCEEeccccccc-c--ccccccc----------
Confidence 567899999999999999999999999999974 8999999999998777532111000 0 0000000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
... . . . ..+ .+.+ .++ .+.+|+|||++||.+||
T Consensus 101 -------------~~~-~----~--~--~~~--~~~~-------------------~~~----~~~~D~vf~~lhG~~GE 133 (383)
T 3k3p_A 101 -------------TND-T----I--I--ASQ--KIKP-------------------SDI----YEEEAVVFPVLHGPMGE 133 (383)
T ss_dssp -------------CTT-S----C--C--GGG--EECG-------------------GGG----CCTTCEEEEECCSTTTS
T ss_pred -------------ccc-c----c--c--ccc--cccc-------------------ccc----ccCCCEEEEcCCCCCcc
Confidence 000 0 0 0 000 0000 001 13579999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCC-CCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG-VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 727 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~G-Iptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Plv 727 (953)
||++|++||.+||||+|+++.++++||||..||++ |+++| ||||++..+.+.+. ..+.+.++.+.+ +||+|
T Consensus 134 dg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~---l~~~G~Ipvp~~~~~~~~~~----~~~~~~~~~~~l-g~Pvv 205 (383)
T 3k3p_A 134 DGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQV---LESATTIPQVAYVALIEGEP----LESKLAEVEEKL-IYPVF 205 (383)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHH---HHHHCCCCBCCEEEEETTSC----HHHHHHHHHHHC-CSSEE
T ss_pred hHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHhCCCcCCCCEEEEeCccc----hhHHHHHHHHhc-CCCEE
Confidence 99999999999999999999999999999999999 99999 99999999987542 112345566788 69999
Q ss_pred EecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccch
Q 002207 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 807 (953)
Q Consensus 728 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~ 807 (953)
|||+++++|.||++|++.+||.. +++.++.+ +..+|||+||+|+
T Consensus 206 VKP~~ggss~GV~~v~~~~el~~---al~~a~~~-------------------~~~vlVEe~I~G~-------------- 249 (383)
T 3k3p_A 206 VKPANMGSSVGISKAENRTDLKQ---AIALALKY-------------------DSRVLIEQGVDAR-------------- 249 (383)
T ss_dssp EEECC------CEEESSHHHHHH---HHHHHHHH-------------------CSEEEEEECCCSE--------------
T ss_pred EEeCCCCCCCCEEEECCHHHHHH---HHHHHHhC-------------------CCeEEEEcCCCCe--------------
Confidence 99999999999999999999875 67777766 6789999999997
Q ss_pred hhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 002207 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANA 887 (953)
Q Consensus 808 ~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~a 887 (953)
|++|+|++++ ... ..+..++....+||||++||..+.+...+|++ +++++.+++++++.+++++
T Consensus 250 -----------E~~v~vl~d~-~~~-~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~---l~~~~~~~i~~~a~~~~~a 313 (383)
T 3k3p_A 250 -----------EIEVGILGNT-DVK-TTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE---IDPVIVEKMRDYAATAFRT 313 (383)
T ss_dssp -----------EEEEEEEESS-SCE-ECCCEEEC-----------------CEESSCC---CCHHHHHHHHHHHHHHHHH
T ss_pred -----------EEEEEEEeCC-Cee-EEeeEEEecCCCccchhhcccCCCeeEEecCC---CCHHHHHHHHHHHHHHHHH
Confidence 9999999864 332 33445666667899999999988888889987 6899999999999999999
Q ss_pred cCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 888 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 888 Lg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|||+|++||||+++. +|++|||||||+||||+.|.+++++.++ |..| .+|+.+||++|++|+
T Consensus 314 Lg~~G~~~vDf~~~~-~g~~~vlEINtrPG~t~~S~~p~~~~a~-Gi~~-~~li~~li~~a~~r~ 375 (383)
T 3k3p_A 314 LGCCGLSRCDFFLTE-DGKVYLNELNTMPGFTQWSMYPLLWENM-GLSY-SVLIEELVSLAKEMF 375 (383)
T ss_dssp TTCCEEEEEEEEECT-TCCEEEEEEESSCCCC--CHHHHHHHHT-TCCH-HHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEEEEC-CCCEEEEEeeCCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHHHHH
Confidence 999999999999985 6899999999999999999888887776 4455 599999999999885
No 13
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=100.00 E-value=1.5e-54 Score=495.57 Aligned_cols=358 Identities=24% Similarity=0.291 Sum_probs=258.4
Q ss_pred ccccCCCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCcc
Q 002207 484 ALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSL 563 (953)
Q Consensus 484 ~~~~~~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 563 (953)
.|+..|.++||+|||||.|+||||||.||++|+++|+. .+|+|++|+|++++.|......+ ..+...+
T Consensus 15 ~~~~~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~~~~~~~~~~~~---------~~~~~~~-- 82 (386)
T 3e5n_A 15 YFQGHMRKIRVGLIFGGKSAEHEVSLQSARNILDALDP-QRFEPVLIGIDKQGQWHVNDPDS---------FLLHADD-- 82 (386)
T ss_dssp ------CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEECGGG---------SEESTTC--
T ss_pred hhhhhcCCceEEEEeccCCCCchhHHHHHHHHHHHhCc-cCCEEEEEEECCCCCEEecccch---------hhccccc--
Confidence 45566889999999999999999999999999999975 89999999999988776432110 0000000
Q ss_pred ccccchhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecC
Q 002207 564 VLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVH 643 (953)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~h 643 (953)
... ....... ..+. +.+......+.. . . .....+.+|+|||++|
T Consensus 83 ----~~~-------~~~~~~~--------~~~~------~~~~~~~~~~~~-~---------~-~~~~~~~~D~vf~~lh 126 (386)
T 3e5n_A 83 ----PAR-------IALHRSG--------RGVA------LLPGAQQQQLRP-I---------Q-PEQALAQIDVVFPIVH 126 (386)
T ss_dssp ----TTT-------CEECCCC--------CCEE------ECTTCSSSCEEE-C---------C---CCCCCCSEEEEEEC
T ss_pred ----ccc-------ccccccc--------ccee------eccCccccceec-c---------c-cccccCCCCEEEEcCC
Confidence 000 0000000 0000 000000000000 0 0 0012346899999999
Q ss_pred CCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCC
Q 002207 644 GGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 723 (953)
Q Consensus 644 G~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~ 723 (953)
|.+||||++|++||.+||||+|+++.++++||||..+|++ |+++|||||++..+.+.++.. ..+.++.+.+ +
T Consensus 127 G~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~~----~~~~~~~~~l-g 198 (386)
T 3e5n_A 127 GTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRV---LRDARLAVAPFVCFDRHTAAH----ADVDTLIAQL-G 198 (386)
T ss_dssp SHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHH---HHHTTCCBCCEEEEEHHHHTT----CCHHHHHHHH-C
T ss_pred CCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHCCCCCCCEEEEeCcccch----hhHHHHHHhc-C
Confidence 9999999999999999999999999999999999999999 999999999999998654211 1234455678 6
Q ss_pred CcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCccccccccccc
Q 002207 724 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 803 (953)
Q Consensus 724 ~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~ 803 (953)
||+||||++++||.||++|++.+||.. +++.++.+ +..+|||+||+|+
T Consensus 199 ~PvvVKP~~ggss~Gv~~v~~~~el~~---a~~~a~~~-------------------~~~vlVEe~I~G~---------- 246 (386)
T 3e5n_A 199 LPLFVKPANQGSSVGVSQVRTADAFAA---ALALALAY-------------------DHKVLVEAAVAGR---------- 246 (386)
T ss_dssp SSEEEEESBSCSSTTCEEECSGGGHHH---HHHHHTTT-------------------CSEEEEEECCCSE----------
T ss_pred CCEEEEECCCCcCCCEEEECCHHHHHH---HHHHHHhC-------------------CCcEEEEcCCCCe----------
Confidence 999999999999999999999999985 67776654 6789999999997
Q ss_pred ccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCC-ceeEcCCCCCCCCHHHHHHHHHHHH
Q 002207 804 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIE 882 (953)
Q Consensus 804 ~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~-~~~~~P~~~~~l~~~~~~~i~~~a~ 882 (953)
|++|+|+++++.. +.+..++....+||+|+.||..+. +..++|++ +++++.+++++++.
T Consensus 247 ---------------E~~v~vl~~~~~~--~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~---l~~~~~~~i~~~a~ 306 (386)
T 3e5n_A 247 ---------------EIECAVLGNAVPH--ASVCGEVVVHDAFYSYATKYISEHGAEIVIPAD---IDAQTQQRIQQIAV 306 (386)
T ss_dssp ---------------EEEEEEECSSSCE--EEEEEEECC-----------------CEESSCS---SCHHHHHHHHHHHH
T ss_pred ---------------EEEEEEEeCCCce--EEEeEEEEeCCcccchhcccCCCCCeEEEECCC---CCHHHHHHHHHHHH
Confidence 9999999976522 223335555667999999998643 67788987 68999999999999
Q ss_pred HHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 883 LIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 883 ~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
+++++|||+|++||||+++. +|++|||||||+||||+.|.+++++.++ |..| .+|+.+||++|++|+
T Consensus 307 ~~~~aLg~~G~~~vDf~~~~-dg~~~vlEiN~~PG~t~~S~~p~~~~~~-Gi~~-~~li~~li~~a~~r~ 373 (386)
T 3e5n_A 307 QAYQALGCAGMARVDVFLCA-DGRIVINEVNTLPGFTRISVYPKLWQAS-GLDY-RGLITRLIELALERH 373 (386)
T ss_dssp HHHHHHTCCSEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHTT-TCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccEEEEEEEEEC-CCcEEEEEeECCCCCCccCHHHHHHHHh-CCCH-HHHHHHHHHHHHHHh
Confidence 99999999999999999985 6899999999999999999888877765 4456 599999999999875
No 14
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=100.00 E-value=2.4e-53 Score=482.77 Aligned_cols=353 Identities=22% Similarity=0.320 Sum_probs=270.5
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.++||+|||||.|+||||||.||++|+.+|+. .+|+|++|+|++++.|......+ ..+... +
T Consensus 1 m~~~~v~vl~GG~S~E~evSl~S~~~v~~al~~-~~~~v~~i~i~~~~~~~~~~~~~---------~~~~~~-------~ 63 (364)
T 3i12_A 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-TRFDVVLLGIDKAGQWHVNDAEN---------YLQNAD-------D 63 (364)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEECSSS---------SBSSTT-------C
T ss_pred CCccEEEEEeccCCCCccchHHHHHHHHHHHhh-cCCeEEEEEECCCCCEEecccch---------hhhccc-------c
Confidence 457899999999999999999999999999975 89999999999988776432110 000000 0
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
... . ...... ..+ .+.+......+..... ....+.+|+|||++||.+||
T Consensus 64 ~~~-----~-~~~~~~--------~~~------~~~~~~~~~~~~~~~~-----------~~~~~~~D~vf~~lhG~~gE 112 (364)
T 3i12_A 64 PAH-----I-ALRPSA--------ISL------AQVPGKHQHQLINAQN-----------GQPLPTVDVIFPIVHGTLGE 112 (364)
T ss_dssp TTT-----C-CBCCCS--------CBE------EECTTCSSSCEEETTT-----------CCBCCCCSEEEECCCSTTTT
T ss_pred ccc-----c-cccccc--------ccc------eecccccccceecccc-----------ccccCCCCEEEEeCCCCCCc
Confidence 000 0 000000 000 0000000000000000 00134689999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+||||+|+++.++++||||..+|++ |+++|||||++..+.+.++.. ..+.++.+.+ +||+||
T Consensus 113 dg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~~~----~~~~~~~~~l-g~PvvV 184 (364)
T 3i12_A 113 DGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRL---LRDAGLNIAPFITLTRTNRHA----FSFAEVESRL-GLPLFV 184 (364)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCCBCCEEEEETTTGGG----CCHHHHHHHH-CSSEEE
T ss_pred CHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEEEccccch----hhHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 999999999999998765211 1234455678 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+++++|.||++|++.++|.. +++.++.+ +..+|||+||+|+
T Consensus 185 KP~~ggss~Gv~~v~~~~el~~---a~~~a~~~-------------------~~~vlVEe~I~G~--------------- 227 (364)
T 3i12_A 185 KPANQGSSVGVSKVANEAQYQQ---AVALAFEF-------------------DHKVVVEQGIKGR--------------- 227 (364)
T ss_dssp EETTCCTTTTCEEESSHHHHHH---HHHHHHHH-------------------CSEEEEEECCCSE---------------
T ss_pred EECCCCCCcCeEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEEcCcCCe---------------
Confidence 9999999999999999999875 67777665 6789999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCC-ceeEcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIELIANA 887 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~-~~~~~P~~~~~l~~~~~~~i~~~a~~~~~a 887 (953)
|++|+++++++. ...+..++....+||+|+.||..+. +..++|++ +++++.+++++.+.+++++
T Consensus 228 ----------E~~v~vl~~~~~--~~~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~a 292 (364)
T 3i12_A 228 ----------EIECAVLGNDNP--QASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQ---IPSEVNDKIRAIAIQAYQT 292 (364)
T ss_dssp ----------EEEEEEEESSSC--EEEEEEEEECCTTCC--TTTTSGGGGCEEESSCS---SCHHHHHHHHHHHHHHHHH
T ss_pred ----------EEEEEEEeCCCc--eEeeeEEEecCCCccCHHHcccCCCceEEEeCCC---CCHHHHHHHHHHHHHHHHH
Confidence 999999987642 2334455666678999999998766 77788987 6899999999999999999
Q ss_pred cCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 888 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 888 Lg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|||+|++||||+++. +|++||+||||+||||++|.+++++.++ |..| .+|+.+||++|++|+
T Consensus 293 lg~~G~~~vD~~~~~-~g~~~vlEiN~~Pg~t~~s~~p~~~~a~-G~~~-~~l~~~li~~a~~~~ 354 (364)
T 3i12_A 293 LGCAGMARVDVFLTA-DNEVVINEINTLPGFTNISMYPKLWQAS-GLGY-TDLISRLIELALERH 354 (364)
T ss_dssp TTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHTT-TCCH-HHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEEEec-CCCEEEEEeeCCCCCCCCCHHHHHHHHh-CcCH-HHHHHHHHHHHHHHH
Confidence 999999999999985 6899999999999999999888887776 4555 599999999999875
No 15
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=100.00 E-value=1.5e-52 Score=468.65 Aligned_cols=319 Identities=27% Similarity=0.344 Sum_probs=266.3
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeeccc--ccccCCCCCccccccccccccCcc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSA--QVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
+||||+|||||.|+||||||.||++|++||++ +|+++++++++.|+..+.. .+..... .+.+......+
T Consensus 2 ~~~~v~vl~gg~s~E~~vSl~s~~~v~~al~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--- 72 (322)
T 2fb9_A 2 EFMRVLLIAGGVSPEHEVSLLSAEGVLRHIPF---PTDLAVIAQDGRWLLGEKALTALEAKAA---PEGEHPFPPPL--- 72 (322)
T ss_dssp CCCCEEEEEECSSTTHHHHHHHHHHHHHHCSS---CEEEEEECTTSCEECHHHHHHHTTSSCC---CCCCBCSSCCC---
T ss_pred CCcEEEEEeCCCchhHHHHHHHHHHHHHHhcc---CeEEEEEcCCCCEEecccchhhhccccc---cceeccccccc---
Confidence 35899999999999999999999999999988 9999999999999743210 1110000 11111000000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
. ..++|+|||.+||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|++..+.+.+.
T Consensus 73 ----~--~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~-- 144 (322)
T 2fb9_A 73 ----S--WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEP-- 144 (322)
T ss_dssp ----C--CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSC--
T ss_pred ----c--ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEECchh--
Confidence 0 24799999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
. . + .++||+||||++++||+||++|++.+|+.+....++ .++..+|||+||+|++|++|.|++++
T Consensus 145 -~--~------~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~--~~~~~vlvEe~I~G~~E~~v~vl~~~--- 209 (322)
T 2fb9_A 145 -P--V------V-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAF--RYDEKAVVEKALSPVRELEVGVLGNV--- 209 (322)
T ss_dssp -C--C------C-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHT--TTCSEEEEEECCSSCEEEEEEEESSS---
T ss_pred -h--h------h-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH--hcCCeEEEEeCCCCCeeEEEEEEeCC---
Confidence 0 1 1 367899999999999999999999999887766554 36789999999996599999999532
Q ss_pred ccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeee
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 393 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~ 393 (953)
.+.+++++++.. ...||+|..||..+. +.+.+|+.+++++.++++++|.+++++|||+|++||||++
T Consensus 210 --~~~~~~~~ei~~----------~~~~~~~~~k~~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~ 276 (322)
T 2fb9_A 210 --FGEASPVGEVRY----------EAPFYDYETKYTPGR-AELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFL 276 (322)
T ss_dssp --SCEEEEEEEEEE----------ECCEEETTTEEECCE-EEEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEE
T ss_pred --CceEeeeEEEee----------CCCccCHHHcccCCC-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEE
Confidence 245667777653 246999999998654 6778999999999999999999999999999999999986
Q ss_pred cCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 394 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+ +|++||+||||+||||.+|+||++++++|++|.+++.++|+.|++
T Consensus 277 -----------------~-~g~~~vlEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li~~a~~ 322 (322)
T 2fb9_A 277 -----------------A-EGELYLNELNTIPGFTPTSMYPRLFEAGGVAYPELLRRLVELALT 322 (322)
T ss_dssp -----------------E-TTEEEEEEEESSCCCSSSCHHHHHHHHTTCCHHHHHHHHHHHHTC
T ss_pred -----------------E-CCcEEEEEEECCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 6 789999999999999999999999999999999999999999873
No 16
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=100.00 E-value=9.5e-53 Score=480.09 Aligned_cols=340 Identities=21% Similarity=0.300 Sum_probs=274.5
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHh-hcCCCEEEEEEEecCCceeeecc----------cccc-cCCCCCcc--cc
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHI-QGDDLLVRCYYIDRNLNAYAISS----------AQVY-SNTPADFD--FK 142 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL-~~~g~~V~~i~id~~g~~~~~~~----------~~~~-~~~~~~~~--~~ 142 (953)
||||+|||||.|+|||||+.||++|++|| ++.||+|+++++++++.|+.... ..+. .. ...+. .+
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAF-MKTVDASDP 81 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHH-HTSCCTTCT
T ss_pred CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhcccc-ccccccccc
Confidence 57999999999999999999999999999 99999999999999998874200 0000 00 00000 00
Q ss_pred ccccccccCcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCC
Q 002207 143 LESLAQGFGSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVP 222 (953)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~ 222 (953)
+.+. .+... ..++|+|||.+||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|+
T Consensus 82 ~~~~--------~~~~~-~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~ 152 (377)
T 1ehi_A 82 LARI--------HALKS-AGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTK 152 (377)
T ss_dssp TCTT--------GGGGT-TCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCC
T ss_pred cCcc--------hhhcc-ccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCC
Confidence 0000 00001 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEE
Q 002207 223 SFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEF 302 (953)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~ 302 (953)
+..+.+.+.....+.++.+ .++||+||||+.++||+||++|++.+|+.+++..++ .++..+|||+||+|.+|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~-----~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~--~~~~~vlvEe~I~G~~E~ 225 (377)
T 1ehi_A 153 YIVVDPESANNWSWDKIVA-----ELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSF--QYDYKVLIEEAVNGAREL 225 (377)
T ss_dssp EEEECTTGGGGCCHHHHHH-----HHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHT--TTCSCEEEEECCCCSCEE
T ss_pred EEEEeccccchHHHHHHHH-----hcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHH--hcCCcEEEEcCCCCCceE
Confidence 9998765321111222222 257899999999999999999999999887766544 367899999999965999
Q ss_pred EEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Q 002207 303 TAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG 382 (953)
Q Consensus 303 tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 382 (953)
+|.|++++ .+.+++++|+.... .....+||+|..||..+..+.+.+|+.+++++.++++++|.+++++||
T Consensus 226 ~v~vl~~~-----~~~~~~~~ei~~~~-----~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg 295 (377)
T 1ehi_A 226 EVGVIGND-----QPLVSEIGAHTVPN-----QGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLN 295 (377)
T ss_dssp EEEEEESS-----SCEEEEEEEEECTT-----SSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCC-----CcEEEeeEEEEecC-----CCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999632 24566777765310 000246999999998652367889999999999999999999999999
Q ss_pred CCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 383 LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 383 ~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
|+|++||||++ +++|++||+||||+||||.+|+||++++++|++|.+++.++|+.|+.|+.
T Consensus 296 ~~G~~~vD~~~-----------------~~~g~~~vlEiN~rpg~t~~s~~p~~~~a~G~~~~~l~~~li~~al~r~~ 356 (377)
T 1ehi_A 296 LRGEARMDFLL-----------------DENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFEDFA 356 (377)
T ss_dssp CCEEEEEEEEE-----------------CTTCCEEEEEEESSCCCSTTCGGGTGGGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEE-----------------eCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHhhhc
Confidence 99999999986 56789999999999999999999999999999999999999999999864
No 17
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=100.00 E-value=1.2e-51 Score=465.28 Aligned_cols=335 Identities=21% Similarity=0.290 Sum_probs=271.5
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc-hh
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL-SE 155 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 155 (953)
+|||+||+||.|.|||||+.||++|+++|++.||+|+++++++++.|+..+.............+++.+.......+ ..
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLLVKK 82 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEEEEE
T ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceecccccccccceeec
Confidence 57999999999999999999999999999999999999999999998764321000000000001111100000000 00
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
.......++|+|||.+||.+||||.+|++||.+|+||+|+++.++++++||..+|++|+++|||+|++..+.+.+...
T Consensus 83 ~~~~~~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~-- 160 (343)
T 1e4e_A 83 NHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPV-- 160 (343)
T ss_dssp TTEEEEEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTTCCCC--
T ss_pred ccccccccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEEEechhhhh--
Confidence 000012479999999999999999999999999999999999999999999999999999999999999987654311
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
. ..++||+||||++++||+||.+|++.+|+......++ .++..+|||+||+| +|++|.+++++.
T Consensus 161 --~-------~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~--~~~~~~lvEe~I~G-~E~~v~vl~~~~---- 224 (343)
T 1e4e_A 161 --A-------ATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESAR--QYDSKILIEQAVSG-CEVGCAVLGNSA---- 224 (343)
T ss_dssp --G-------GGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHT--TTCSSEEEEECCCS-EEEEEEEEEETT----
T ss_pred --h-------hccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCcEEEEeCcCC-eEEEEEEEeCCC----
Confidence 1 1367899999999999999999999999877666543 36789999999997 999999997532
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCcc----CCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL----PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~----~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
.+.+++++|+.. .+.||+|++||. .+. +.+.+|+.++++..++++++|.+++++||++|++||||
T Consensus 225 ~~~~~~~~ei~~----------~~~~~~~~~k~~~~~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 293 (343)
T 1e4e_A 225 ALVVGEVDQIRL----------QYGIFRIHQEVEPEKGSEN-AVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDM 293 (343)
T ss_dssp CCEECCCEEEEE----------SSSCCCGGGSSSGGGCCSS-EEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CeEEeeeEEEee----------CCCccCHhhcccccCCCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEE
Confidence 256677777653 346999999998 443 67789999999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
++ +++|++||+||||+||+|.+|+||++++++|+++.+++.++|+.|++
T Consensus 294 ~~-----------------~~~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li~~a~~ 342 (343)
T 1e4e_A 294 FL-----------------QDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLALK 342 (343)
T ss_dssp EE-----------------CTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred EE-----------------eCCCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 86 67899999999999999999999999999999999999999999874
No 18
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=100.00 E-value=2.7e-52 Score=465.46 Aligned_cols=304 Identities=24% Similarity=0.338 Sum_probs=240.3
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
+++||+||+||.|+|||||+.||++|+++|++.||+|+.++. .++. +. .
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~-~~~~--------------------~~----------~ 60 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDP-AERP--------------------LS----------A 60 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECT-TTSC--------------------TT----------H
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeC-CCch--------------------HH----------H
Confidence 357999999999999999999999999999999999998751 2110 00 0
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
+ ...++|+|||++||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|++..+.+.+.....
T Consensus 61 l---~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~ 137 (317)
T 4eg0_A 61 L---KDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAAR 137 (317)
T ss_dssp H---HHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHH
T ss_pred h---hhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEECchhHHHH
Confidence 0 0237999999999999999999999999999999999999999999999999999999999999998876532221
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC-CCeEEEEEEEEeCCCCc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE-GGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~-Gg~E~tv~Vl~~~~g~~ 314 (953)
+.++.. .++||+||||..+++|.||++|++.+|+.+.+...+ .++..+|||+||+ | +|++|.|+++ .
T Consensus 138 ~~~~~~-----~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~--~~~~~~lvEe~i~~G-~E~~v~vl~~----~ 205 (317)
T 4eg0_A 138 ATDIVA-----KLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA--THDKIVIVEKSIEGG-GEYTACIAGD----L 205 (317)
T ss_dssp HHHHHH-----HHCSCEEEEECC-----CCEEECSGGGHHHHHHHHT--TTCSEEEEEECCCSS-EEEEEEEETT----C
T ss_pred HHHHHH-----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH--hCCCeEEEEcCCCCC-cEEEEEEECC----c
Confidence 211112 257899999999999999999999999877766543 4678999999999 7 9999999942 1
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeec
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFL 394 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~ 394 (953)
.+++.++. . ...||+|..||..+. +.+.+|+.+++++.+++++.|.+++++|||+|++||||++
T Consensus 206 ----~~~~~~i~--~--------~~~~~~~~~k~~~g~-~~~~~P~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~- 269 (317)
T 4eg0_A 206 ----DLPLIKIV--P--------AGEFYDYHAKYVAND-TQYLIPCGLPAEQETELKRIARRAFDVLGCTDWGRADFML- 269 (317)
T ss_dssp ----CCCCEEEE--C------------------------CEEESSCSSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEE-
T ss_pred ----ccceEEEe--e--------CCceechhhcccCCC-eeEEcCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE-
Confidence 12333332 2 456999999998765 6788999999999999999999999999999999999986
Q ss_pred CCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 395 PSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
+++|++||+||||+||||++|+||++++++|++|.+|+.+||+.|++
T Consensus 270 ----------------~~~g~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li~~a~~ 316 (317)
T 4eg0_A 270 ----------------DAAGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVLSLTLN 316 (317)
T ss_dssp ----------------CTTCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHTTC-
T ss_pred ----------------eCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 56899999999999999999999999999999999999999998864
No 19
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=100.00 E-value=5.9e-52 Score=468.37 Aligned_cols=339 Identities=25% Similarity=0.302 Sum_probs=260.8
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
+++||+|||||.|+||||||.||.+|+++|+. .+|+|++|.+++++.|+....... ....+.|.
T Consensus 2 ~~~~v~vl~GG~s~e~~vSl~sa~~v~~al~~-~g~~v~~i~~~~~~~~~~~~~~~~----~~~~~~~~----------- 65 (346)
T 3se7_A 2 SHMKIGIIFGGVSEEHDISVKSAREVATHLGT-GVFEPFYLGITKSGAWQLCDGPGE----NWEDGNCR----------- 65 (346)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEESCSSS----SSSSSCCE-----------
T ss_pred CCCEEEEEeeecCCCccHHHHHHHHHHHHhcc-cCCEEEEEEECCCCCEEeccchhh----hhcccccc-----------
Confidence 57899999999999999999999999999974 899999999999877764321100 00000010
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.+ .+.+.. ....+.... +. ...++.+|+|||++||.+|||
T Consensus 66 ~~-------~~~~~~-----------------------~~~~~~~~~--~~--------~~~~~~~D~v~~~lhG~~ged 105 (346)
T 3se7_A 66 PA-------VLSPDR-----------------------SVHGLLVLE--QG--------KYETIRLDLVLPVLHGKLGED 105 (346)
T ss_dssp EE-------EECCCT-----------------------TTCEEEEEE--TT--------EEEEEECSEEEECCCSTTTTS
T ss_pred cc-------eeccCc-----------------------cCccceecc--cc--------cccccCCCEEEEccCCCCCCC
Confidence 00 000000 000000000 00 001346899999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|++|++||.+||||+|+++.++++||||..||++ |+++|||||++..+.+.+. .....+ +||+|||
T Consensus 106 g~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~----------~~~~~l-g~PvvvK 171 (346)
T 3se7_A 106 GAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLV---ARSAGIATPNFWTVTADEK----------IPTDQL-TYPVFVK 171 (346)
T ss_dssp SHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHH---HHHTTCBCCCEEEEETTSC----------CCTTTC-CSSEEEE
T ss_pred hHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHH---HHHcCcCcCCEEEEcCcHH----------HHHHhc-CCCEEEE
Confidence 9999999999999999999999999999999999 9999999999999987541 113467 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|+++++|.||++|++.++|.. +++.++.+ +..+|||+||+|+
T Consensus 172 P~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEe~I~G~---------------- 213 (346)
T 3se7_A 172 PARSGSSFGVSKVAREEDLQG---AVEAAREY-------------------DSKVLIEEAVIGT---------------- 213 (346)
T ss_dssp ESSCCTTTTCEEECSHHHHHH---HHHHHTTT-------------------CSEEEEEECCCSE----------------
T ss_pred eCCCCCCcCEEEECCHHHHHH---HHHHHHhC-------------------CCcEEEEeCcCCE----------------
Confidence 999999999999999999875 67766544 6789999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccc----cccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL----EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~----~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
|++|.++++++... +.+..++...++||+| +.||..+.+...+|++ +++++.+++++.+.+++
T Consensus 214 ---------E~~v~vl~~~~~~~-~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~---l~~~~~~~i~~~a~~~~ 280 (346)
T 3se7_A 214 ---------EIGCAVMGNGPELI-TGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD---ISTTSRSLVQDTAKAVY 280 (346)
T ss_dssp ---------EEEEEEEEETTEEE-ECCCEEECCC--------------CGGGSCEESSCC---CCHHHHHHHHHHHHHHH
T ss_pred ---------EEEEEEEecCCCeE-EEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC---CCHHHHHHHHHHHHHHH
Confidence 99999999876543 4566677777789999 9999987777888987 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
++|||+|++||||+++. +|++||+||||+||||++|.+++++.+. |..| .+++.+||+.|++|+
T Consensus 281 ~~lg~~G~~~vD~~~~~-~g~~~vlEiN~rPG~t~~s~~p~~~~~~-G~~~-~~l~~~li~~a~~~~ 344 (346)
T 3se7_A 281 RALGCRGLSRVDLFLTE-DGKVVLNEVNTFPGMTSYSRYPRMMTAA-GLSR-ADVIDRLVSLALAGK 344 (346)
T ss_dssp HHHTCCEEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHT-TCCH-HHHHHHHHHHHHC--
T ss_pred HHhCCceEEEEEEEEeC-CCCEEEEEEeCCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHHHhh
Confidence 99999999999999985 6899999999999999999888887764 5556 589999999999885
No 20
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=100.00 E-value=2.9e-51 Score=465.86 Aligned_cols=339 Identities=24% Similarity=0.331 Sum_probs=264.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
+|||+||+||.|.|||||+.||++|+++|++.||+|+++++++++.|+..+...........+.+. .+....+. .+
T Consensus 3 ~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~ 78 (364)
T 2i87_A 3 KENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLE-NGEALEIS---QL 78 (364)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGG-GSEEECSS---GG
T ss_pred CcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhccc-cccccccc---cc
Confidence 579999999999999999999999999999999999999999999887543210000000000000 01000000 00
Q ss_pred HHh--hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch-
Q 002207 157 AEH--LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE- 233 (953)
Q Consensus 157 ~~~--~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~- 233 (953)
... ....+|+|||.+||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|++..+.+.+...
T Consensus 79 ~~~~~~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~ 158 (364)
T 2i87_A 79 LKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKY 158 (364)
T ss_dssp GGBCTTSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEEEEHHHHHHH
T ss_pred ccccccccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhhccc
Confidence 000 12469999999999999999999999999999999999999999999999999999999999999887543110
Q ss_pred --hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 234 --SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 234 --~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
..+..+.+ .++||+||||+.++||+||.+|++.+|+......++ .++..+|||+||+| +|++|.+++++
T Consensus 159 ~~~~~~~~~~-----~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~--~~~~~~lvEe~I~G-~E~~v~vl~~~- 229 (364)
T 2i87_A 159 EHNILKLVND-----KLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNA-REIEVAVLGND- 229 (364)
T ss_dssp HHHHHHHHHH-----HCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHH--TTCSEEEEEECCCC-EEEEEEEEESS-
T ss_pred chhHHHHHHH-----hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH--hcCCeEEEEeCccC-eEEEEEEEcCC-
Confidence 11223222 267899999999999999999999999877666554 36789999999998 99999999632
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
.+.+++++|+.. ...||+|..||..+. +.+.+|+.+++++.++++++|.+++++|||+|++||||
T Consensus 230 ----~~~~~~~~e~~~----------~~~~~~~~~k~~~g~-~~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 294 (364)
T 2i87_A 230 ----YPEATWPGEVVK----------DVAFYDYKSKYKDGK-VQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADF 294 (364)
T ss_dssp ----SCEECCCEEECC----------SCCC------------CCEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ----CcEEeeeEEEec----------CCCcCCHHHcccCCC-eeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 245667776642 346999999998654 56789999999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
++ +++|++||+||||+||+|.+|+||++++++|+++.+++.++|+.|+.|+.
T Consensus 295 ~~-----------------~~~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~~~l~~~li~~al~~~~ 346 (364)
T 2i87_A 295 FV-----------------TEDNQIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELAKERHQ 346 (364)
T ss_dssp EE-----------------CTTCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EE-----------------ecCCCEEEEEEeCCCCCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHhhh
Confidence 86 57899999999999999999999999999999999999999999998853
No 21
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=100.00 E-value=2.9e-49 Score=451.27 Aligned_cols=347 Identities=24% Similarity=0.273 Sum_probs=265.7
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHH-hccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCcccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNL-QAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRH 567 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l-~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 567 (953)
|.|+||+|||||.|.||||||.||.+|+++| +. .+|+|++|++++++.|... + +...... ..
T Consensus 1 m~k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~-~g~~v~~i~~~~~~~~~~~--~------------~~~~~~~--~~ 63 (377)
T 1ehi_A 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEAT-GKYEIIVFAIAQNGFFLDT--E------------SSKKILA--LE 63 (377)
T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHH-SSEEEEEEEECTTSCBCCH--H------------HHHHHHT--TC
T ss_pred CCCcEEEEEeCCCCCCcceeHHHHHHHHHHhCcc-cCcEEEEEEEcCCCCEEec--c------------ccccccc--cc
Confidence 3478999999999999999999999999999 75 8999999999997665421 0 0000000 00
Q ss_pred chhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCC
Q 002207 568 TTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIG 647 (953)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~G 647 (953)
+... +.. ... +. +....++. |. .+.. ..+.+|+|||.+||.+|
T Consensus 64 ~~~~-~~~-~~~--~~-------------------~~~~~~~~--------~~-----~~~~-~~~~~D~v~~~~~g~~g 106 (377)
T 1ehi_A 64 DEQP-IVD-AFM--KT-------------------VDASDPLA--------RI-----HALK-SAGDFDIFFPVVHGNLG 106 (377)
T ss_dssp CHHH-HHH-HHH--TS-------------------CCTTCTTC--------TT-----GGGG-TTCCCSEEEEECCSTTT
T ss_pred chhh-hcc-ccc--cc-------------------cccccccC--------cc-----hhhc-cccCCCEEEEecCCCCC
Confidence 0000 000 000 00 00000000 00 0010 12468999999999999
Q ss_pred CccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEE
Q 002207 648 EDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 727 (953)
Q Consensus 648 Edg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Plv 727 (953)
|||++|++||.+|+||+|+++.++++|+||..||++ |+++|||||++..+.+.+.. ...+.++.+.+ +||+|
T Consensus 107 edg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~~----~~~~~~~~~~~-g~Pvv 178 (377)
T 1ehi_A 107 EDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKEL---LTVNGIRNTKYIVVDPESAN----NWSWDKIVAEL-GNIVF 178 (377)
T ss_dssp SSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHH---HHTTTCCCCCEEEECTTGGG----GCCHHHHHHHH-CSCEE
T ss_pred cCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHH---HHHcCCCCCCEEEEeccccc----hHHHHHHHHhc-CCCEE
Confidence 999999999999999999999999999999999999 99999999999998764310 11234455678 69999
Q ss_pred EecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC-cccccccccccccc
Q 002207 728 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET-DEILFSSQSTNKNA 806 (953)
Q Consensus 728 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G-~~~~v~~~~~~~~~ 806 (953)
|||+.+++|.||++|++.++|.. +++.++.+ +..+|||+||+| +
T Consensus 179 VKP~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEe~I~G~~------------- 223 (377)
T 1ehi_A 179 VKAANQGSSVGISRVTNAEEYTE---ALSDSFQY-------------------DYKVLIEEAVNGAR------------- 223 (377)
T ss_dssp EEESSCCTTTTEEEECSHHHHHH---HHHHHTTT-------------------CSCEEEEECCCCSC-------------
T ss_pred EEeCCCCCCcCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEEcCCCCCc-------------
Confidence 99999999999999999998875 66666544 578999999999 6
Q ss_pred hhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEec-----CCccccccccccCC-CceeEcCCCCCCCCHHHHHHHHHH
Q 002207 807 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-----SGDILSLEEKFQGG-TGINLTPPPASIMSTEALDKCKQR 880 (953)
Q Consensus 807 ~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~-----~~~~~d~~~Ky~~g-~~~~~~P~~~~~l~~~~~~~i~~~ 880 (953)
|++|.|++++.. . +.+..++.. ..+||+|+.||..+ .+..++|++ ++++..++++++
T Consensus 224 ------------E~~v~vl~~~~~-~-~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~---l~~~~~~~i~~~ 286 (377)
T 1ehi_A 224 ------------ELEVGVIGNDQP-L-VSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ---LSPEVTKEVKQM 286 (377)
T ss_dssp ------------EEEEEEEESSSC-E-EEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC---CCHHHHHHHHHH
T ss_pred ------------eEEEEEEcCCCc-E-EEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCC---CCHHHHHHHHHH
Confidence 999999987532 2 334445554 46799999999877 667788987 689999999999
Q ss_pred HHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 881 IELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 881 a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
+.+++++|||+|++||||+++. +|++|||||||+||||++|.+++++.+ .|..| .+++.++|+.|++|+
T Consensus 287 a~~~~~alg~~G~~~vD~~~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~a-~G~~~-~~l~~~li~~al~r~ 355 (377)
T 1ehi_A 287 ALDAYKVLNLRGEARMDFLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDY-SDINN-AKLVDMLIDYGFEDF 355 (377)
T ss_dssp HHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCGGGTGGGG-GTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEEEEEeC-CCCEEEEEEeCCCCCCcccHHHHHHHH-hCCCH-HHHHHHHHHHHHhhh
Confidence 9999999999999999999985 689999999999999999988877765 45555 599999999999874
No 22
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=100.00 E-value=2.6e-49 Score=449.34 Aligned_cols=324 Identities=22% Similarity=0.282 Sum_probs=250.5
Q ss_pred cCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccc----c--ccc
Q 002207 73 RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFK----L--ESL 146 (953)
Q Consensus 73 ~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~----~--~~~ 146 (953)
++.++|||+|||||.|+|||||+.||++|++||+ ||+|+++++++++.|+..+.. .. ....+... . ...
T Consensus 16 ~~~~~~~v~vl~gG~s~E~~vSl~S~~~v~~al~--g~~v~~i~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 90 (367)
T 2pvp_A 16 PRGSHMEFCVLFGGASFEHEISIVSAIALKGVLK--DRIKYFIFLDENHHFYLIEES-NM--HSKYFAQIKEKKLPPLIL 90 (367)
T ss_dssp ----CCCEEEEEECSSTTHHHHHHHHHHHHHHHG--GGEEEEEEECTTCCEEECCGG-GC--SHHHHHTGGGSCCCCBEE
T ss_pred ccccCCEEEEEECCCCcchhhhHHHHHHHHHHhC--CCeEEEEEECCCCCEEecccc-cc--chhhhccccccccccccc
Confidence 3445689999999999999999999999999999 999999999999998754211 00 00000000 0 000
Q ss_pred ccc-cCcchhHHHhhcc--CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCe
Q 002207 147 AQG-FGSLSEFAEHLAA--NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPS 223 (953)
Q Consensus 147 ~~~-~~~~~~~~~~~~~--~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~ 223 (953)
... +.... ... .. ++|+|||++||.+||||.+|++||.+|+||+|+++.++++|+||..+|++|+++|||+|++
T Consensus 91 ~~~~~~~~~-~~~--~~~~~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~ 167 (367)
T 2pvp_A 91 THNGLLKNS-FLG--AKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDY 167 (367)
T ss_dssp ETTEEEEEE-TTE--EEEEECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCC
T ss_pred cCcceeccc-ccc--ccccCCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCE
Confidence 000 00000 000 11 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeE--
Q 002207 224 FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSE-- 301 (953)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E-- 301 (953)
..+.+.+.. ++.+ . ..++||+||||++++||+||++|++.+|+.++...++ .++..+|||+||+|++|
T Consensus 168 ~~~~~~~~~--~~~~-~-----~~lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~--~~~~~vlVEe~I~G~~E~s 237 (367)
T 2pvp_A 168 VLLNEKNRA--NALD-L-----MNFNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYN 237 (367)
T ss_dssp EEECTTTGG--GHHH-H-----CCSCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHT--TTCSCEEEEECCTTCEEEE
T ss_pred EEEeCCchH--HHHH-H-----hccCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH--hcCCcEEEEeCCCCCceee
Confidence 998765421 1111 1 2478899999999999999999999998877666554 36789999999996599
Q ss_pred -EEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHH
Q 002207 302 -FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR 380 (953)
Q Consensus 302 -~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~a 380 (953)
++|.| + | .+++..+ |+. . ..+||||++||..++ +.+.+|+.+++++.++++++|.+++++
T Consensus 238 vi~v~v-~---g---~~~~~~~-ei~--~--------~~~~~d~~~ky~~g~-~~~~~Pa~l~~~~~~~i~~~a~~~~~a 298 (367)
T 2pvp_A 238 LAGCKI-K---K---DFCFSYI-EEP--N--------KQEFLDFKQKYLDFS-RNKAPKASLSNALEEQLKENFKKLYSD 298 (367)
T ss_dssp EEEEEE-T---T---EEEEEEE-EET--T--------TTEEECCCCSSCCSC-CCSCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEE-C---C---EEEEEEE-EEe--c--------CCceEcccccccCCC-eeEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 55555 2 2 2333333 432 1 456999999998654 556789999999999999999999999
Q ss_pred hCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHH-HhhhC
Q 002207 381 LGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGH-ACSRF 459 (953)
Q Consensus 381 Lg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~-a~~r~ 459 (953)
|||+|++||||++ + +|++||+||||+||||.+|++| +|.+|+.++++. ++.|.
T Consensus 299 Lg~~G~~~vDf~~-----------------~-~g~~~vlEiN~rpg~t~~s~~p--------~~~~l~~~li~~~~~~~~ 352 (367)
T 2pvp_A 299 LFDGAIIRCDFFV-----------------I-ENEVYLNEINPIPGSLANYLFD--------DFKTTLENLAQSLPKTPK 352 (367)
T ss_dssp TSTTCCEEEEEEE-----------------E-TTEEEEEEEESSCGGGGGGGSS--------SHHHHHHHHHHHCC----
T ss_pred cCCCCEEEEEEEE-----------------E-CCeEEEEEEeCCCCCCcccccC--------CHHHHHHHHHhCccccCC
Confidence 9999999999986 5 7889999999999999999998 999999999988 56553
No 23
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=100.00 E-value=2.3e-48 Score=434.65 Aligned_cols=321 Identities=28% Similarity=0.409 Sum_probs=256.0
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.|+||+|||||.|.||||||.||++|+++|+. +|++|+|++++.|... .
T Consensus 1 m~~~~v~vl~gg~s~E~~vSl~s~~~v~~al~~----~v~~i~~~~~~~~~~~-------------------~------- 50 (322)
T 2fb9_A 1 MEFMRVLLIAGGVSPEHEVSLLSAEGVLRHIPF----PTDLAVIAQDGRWLLG-------------------E------- 50 (322)
T ss_dssp CCCCCEEEEEECSSTTHHHHHHHHHHHHHHCSS----CEEEEEECTTSCEECH-------------------H-------
T ss_pred CCCcEEEEEeCCCchhHHHHHHHHHHHHHHhcc----CeEEEEEcCCCCEEec-------------------c-------
Confidence 357899999999999999999999999999952 8999999887655421 0
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
.+ ...+.... . .+. +. .. +..+ .++.+|+|||.+||.+||
T Consensus 51 -~~-----~~~~~~~~-~---~~~----------~~-----------~~-~~~~--------~~~~~D~v~~~~hg~~ge 90 (322)
T 2fb9_A 51 -KA-----LTALEAKA-A---PEG----------EH-----------PF-PPPL--------SWERYDVVFPLLHGRFGE 90 (322)
T ss_dssp -HH-----HHHTTSSC-C---CCC----------CB-----------CS-SCCC--------CCTTCSEEEEECCSTTTT
T ss_pred -cc-----hhhhcccc-c---cce----------ec-----------cc-cccc--------cccCCCEEEEeCCCCCCc
Confidence 00 00000000 0 000 00 00 0000 134589999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+|+||+|+++.++++|+||..+|++ |+++|||+|++..+.+.+. + .. ++ +||+||
T Consensus 91 dg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~------~----~~-~~-g~Pvvv 155 (322)
T 2fb9_A 91 DGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRV---LAQAGVPVVPWVAVRKGEP------P----VV-PF-DPPFFV 155 (322)
T ss_dssp SSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEEETTSC------C----CC-CS-CSCEEE
T ss_pred cHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHH---HHHCCCCCCCEEEEECchh------h----hh-cc-CCCEEE
Confidence 99999999999999999999999999999999999 9999999999999876541 0 01 56 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC-cccccccccccccch
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET-DEILFSSQSTNKNAD 807 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G-~~~~v~~~~~~~~~~ 807 (953)
||+++++|.||++|++.++|.. +++.++.+ +..+|||+||+| +
T Consensus 156 KP~~g~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEe~I~G~~-------------- 199 (322)
T 2fb9_A 156 KPANTGSSVGISRVERFQDLEA---ALALAFRY-------------------DEKAVVEKALSPVR-------------- 199 (322)
T ss_dssp EETTCCTTTTCEEESSHHHHHH---HHHHHTTT-------------------CSEEEEEECCSSCE--------------
T ss_pred EeCCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCeEEEEeCCCCCe--------------
Confidence 9999999999999999998875 66666543 578999999999 5
Q ss_pred hhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 002207 808 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANA 887 (953)
Q Consensus 808 ~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~a 887 (953)
|++|.+++++... ..+..++.....+|+|+.||..|.+..++|++ +++++.++++++|.+++++
T Consensus 200 -----------E~~v~vl~~~~~~--~~~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~---l~~~~~~~i~~~a~~~~~a 263 (322)
T 2fb9_A 200 -----------ELEVGVLGNVFGE--ASPVGEVRYEAPFYDYETKYTPGRAELLIPAP---LDPGTQETVQELALKAYKV 263 (322)
T ss_dssp -----------EEEEEEESSSSCE--EEEEEEEEEECCEEETTTEEECCEEEEESSCC---CCTTHHHHHHHHHHHHHHH
T ss_pred -----------eEEEEEEeCCCce--EeeeEEEeeCCCccCHHHcccCCCeEEEeCCC---CCHHHHHHHHHHHHHHHHH
Confidence 9999999875422 23334444445799999999987777788987 5788999999999999999
Q ss_pred cCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 888 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 888 Lg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
||++|++||||+++ +|++||+||||+||||++|.+++++.+. |..| .+++.+||++|++
T Consensus 264 lg~~G~~~vD~~~~--~g~~~vlEiN~rpg~t~~s~~p~~~~~~-G~~~-~~l~~~li~~a~~ 322 (322)
T 2fb9_A 264 LGVRGMARVDFFLA--EGELYLNELNTIPGFTPTSMYPRLFEAG-GVAY-PELLRRLVELALT 322 (322)
T ss_dssp HTCCSEEEEEEEEE--TTEEEEEEEESSCCCSSSCHHHHHHHHT-TCCH-HHHHHHHHHHHTC
T ss_pred hCCceEEEEEEEEE--CCcEEEEEEECCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHhC
Confidence 99999999999998 5899999999999999999888877765 5555 5889999999874
No 24
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=100.00 E-value=7.8e-48 Score=434.15 Aligned_cols=337 Identities=23% Similarity=0.353 Sum_probs=264.5
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
.++||+||+||.|.||||||.||.+|+.+|+. .+|+|++|.+++++.|.....+ ....+........+
T Consensus 2 ~~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------- 69 (343)
T 1e4e_A 2 NRIKVAILFGGCSEEHDVSVKSAIEIAANINK-EKYEPLYIGITKSGVWKMCEKP-CAEWENENCYSAVL---------- 69 (343)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECTTSCEEEESCC-CTTCCCTTCEEEEE----------
T ss_pred CCcEEEEEeCCCCCCcchhHHHHHHHHHHhhh-cCCEEEEEEEcCCCCEEecccc-hhhcccccccceec----------
Confidence 47899999999999999999999999999974 8999999999998766543111 00000000000000
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.+. .. . . . ..... .+ ...++.+|+|||++||.+|||
T Consensus 70 -----------~~~--------~~-~----~-~----~~~~~----~~-----------~~~~~~~D~v~~~~~g~~ged 105 (343)
T 1e4e_A 70 -----------SPD--------KK-M----H-G----LLVKK----NH-----------EYEINHVDVAFSALHGKSGED 105 (343)
T ss_dssp -----------CSC--------TT-T----C-E----EEEEE----TT-----------EEEEEECSEEEECCCSTTTTS
T ss_pred -----------ccc--------cc-c----c-c----ceeec----cc-----------ccccccCCEEEEeCCCCCCcC
Confidence 000 00 0 0 0 00000 00 001245799999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|++|++||.+|+||+|+++.++++|+||..+|++ |+++|||+|++..+.+.+... .+.+ +||+|||
T Consensus 106 ~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~~~----------~~~~-~~PvvvK 171 (343)
T 1e4e_A 106 GSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIV---AKNAGIATPAFWVINKDDRPV----------AATF-TYPVFVK 171 (343)
T ss_dssp SHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHH---HHHTTCBCCCEEEECTTCCCC----------GGGS-CSCEEEE
T ss_pred HHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHCCCCcCCEEEEechhhhh----------hhcc-CCCEEEE
Confidence 9999999999999999999999999999999999 999999999999987754321 1467 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|+++++|.||++|++.++|.. +++.++.+ +..+|||+||+|+
T Consensus 172 P~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~~lvEe~I~G~---------------- 213 (343)
T 1e4e_A 172 PARSGSSFGVKKVNSADELDY---AIESARQY-------------------DSKILIEQAVSGC---------------- 213 (343)
T ss_dssp ESSCCTTTTCEEECSGGGHHH---HHHHHTTT-------------------CSSEEEEECCCSE----------------
T ss_pred eCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEEeCcCCe----------------
Confidence 999999999999999999985 56666543 5789999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCcccccccccc----CCCceeEcCCCCCCCCHHHHHHHHHHHHHHH
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ----GGTGINLTPPPASIMSTEALDKCKQRIELIA 885 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~----~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~ 885 (953)
|++|.++++++... ..+..++...++||+|+.||+ .|.+...+|++ ++++..+++++++.+++
T Consensus 214 ---------E~~v~vl~~~~~~~-~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~---l~~~~~~~i~~~a~~~~ 280 (343)
T 1e4e_A 214 ---------EVGCAVLGNSAALV-VGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD---LSAEERGRIQETVKKIY 280 (343)
T ss_dssp ---------EEEEEEEEETTCCE-ECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS---SCHHHHHHHHHHHHHHH
T ss_pred ---------EEEEEEEeCCCCeE-EeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC---CCHHHHHHHHHHHHHHH
Confidence 99999998765533 445556555667999999998 67667778887 68999999999999999
Q ss_pred HHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 886 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 886 ~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
++||+.|++||||+++. +|++||+||||+||+|++|.+++++.+. |..| .+++.+||++|++
T Consensus 281 ~alg~~G~~~vD~~~~~-~g~~~viEiN~rpg~t~~s~~p~~~~~~-G~~~-~~l~~~li~~a~~ 342 (343)
T 1e4e_A 281 KTLGCRGLARVDMFLQD-NGRIVLNEVNTLPGFTSYSRYPRMMAAA-GISL-PELIDRLIVLALK 342 (343)
T ss_dssp HHTTCEEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHHT-TCCH-HHHHHHHHHHHHC
T ss_pred HHcCCceEEEEEEEEeC-CCCEEEEEeeCCCCCCcccHHHHHHHHh-CCCH-HHHHHHHHHHHhc
Confidence 99999999999999985 6899999999999999999888877776 5555 5899999999875
No 25
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=100.00 E-value=4.4e-48 Score=431.38 Aligned_cols=304 Identities=30% Similarity=0.408 Sum_probs=237.8
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
.++||+||+||.|.||||||.||++|+++|++ .+|+|++|. ... . | .
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~-~g~~v~~i~--~~~------------------~-~-----------~ 58 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRD-AGIDAHPFD--PAE------------------R-P-----------L 58 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEEC--TTT------------------S-C-----------T
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHH-CCCEEEEEe--CCC------------------c-h-----------H
Confidence 46799999999999999999999999999975 799998763 110 0 0 0
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.. + .+..+|+||+++||.+|||
T Consensus 59 ~~--------------------------------------------------------l--~~~~~D~v~~~~hg~~ge~ 80 (317)
T 4eg0_A 59 SA--------------------------------------------------------L--KDEGFVRAFNALHGGYGEN 80 (317)
T ss_dssp TH--------------------------------------------------------H--HHTTCCEEEECCCSGGGTS
T ss_pred HH--------------------------------------------------------h--hhcCCCEEEEcCCCCCCch
Confidence 00 0 1124699999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
|++|++||.+|+||+|+++.++++|+||..+|++ |+++|||||++..+.+.+. ..+.++++.+.+ +||+|||
T Consensus 81 ~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~----~~~~~~~~~~~~-g~PvvvK 152 (317)
T 4eg0_A 81 GQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLV---WQQTGVPTPPFETVMRGDD----YAARATDIVAKL-GLPLFVK 152 (317)
T ss_dssp SHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEEETTSC----HHHHHHHHHHHH-CSCEEEE
T ss_pred HHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHH---HHHCCcCCCCEEEEECchh----HHHHHHHHHHhc-CCCEEEE
Confidence 9999999999999999999999999999999999 9999999999999887542 122233334678 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc-Ccccccccccccccchh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE-TDEILFSSQSTNKNADR 808 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~-G~~~~v~~~~~~~~~~~ 808 (953)
|..+++|.||++|++.++|.. +++.++.+ +..+|||+||+ |+
T Consensus 153 P~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~~lvEe~i~~G~--------------- 195 (317)
T 4eg0_A 153 PASEGSSVAVLKVKTADALPA---ALSEAATH-------------------DKIVIVEKSIEGGG--------------- 195 (317)
T ss_dssp ECC-----CCEEECSGGGHHH---HHHHHTTT-------------------CSEEEEEECCCSSE---------------
T ss_pred eCCCCCCCCEEEECCHHHHHH---HHHHHHhC-------------------CCeEEEEcCCCCCc---------------
Confidence 999999999999999999985 56665443 57899999999 86
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.++++. ..+.+++.....||+|+.||..+.+...+|++ ++++..+++++.+.+++++|
T Consensus 196 ----------E~~v~vl~~~-----~~~~~~i~~~~~~~~~~~k~~~g~~~~~~P~~---l~~~~~~~l~~~a~~~~~~l 257 (317)
T 4eg0_A 196 ----------EYTACIAGDL-----DLPLIKIVPAGEFYDYHAKYVANDTQYLIPCG---LPAEQETELKRIARRAFDVL 257 (317)
T ss_dssp ----------EEEEEEETTC-----CCCCEEEEC---------------CEEESSCS---SCHHHHHHHHHHHHHHHHTT
T ss_pred ----------EEEEEEECCc-----ccceEEEeeCCceechhhcccCCCeeEEcCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999874 34455666667799999999988888888987 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 950 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~ 950 (953)
|++|++||||+++. +|++||+||||+||||+.|.+++++.++ |..| .+|+.+||+.|++
T Consensus 258 g~~G~~~vD~~~~~-~g~~~vlEiN~~pg~t~~s~~p~~~~~~-G~~~-~~l~~~li~~a~~ 316 (317)
T 4eg0_A 258 GCTDWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSI-GIGY-SELVVKVLSLTLN 316 (317)
T ss_dssp TCCSEEEEEEEECT-TCCEEEEEEESSCCCSTTSHHHHHHHHT-TCCH-HHHHHHHHHTTC-
T ss_pred CCCceEEEEEEEeC-CCCEEEEEeeCCCCCCcccHHHHHHHHc-CCCH-HHHHHHHHHHHhh
Confidence 99999999999985 6899999999999999999888877765 4566 5999999999875
No 26
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=100.00 E-value=1.4e-47 Score=424.75 Aligned_cols=301 Identities=23% Similarity=0.365 Sum_probs=250.3
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
.+|||+||+||.|+|||||+.||++|+++|++.||+|+.++++....+
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~-------------------------------- 49 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDL-------------------------------- 49 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGH--------------------------------
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhH--------------------------------
Confidence 358999999999999999999999999999999999998876421000
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
... ..++|+||+.+||.+|||+.+|++||.+|+||+|+++.++++++||..++++|+++|||+|++..+.+.+.....
T Consensus 50 -~~~-~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~ 127 (307)
T 3r5x_A 50 -IEK-AKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNFD 127 (307)
T ss_dssp -HHH-TTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHH
T ss_pred -HHh-ccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHH
Confidence 011 137999999999999999999999999999999999999999999999999999999999999998875432211
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
+.. ..+||+||||..+++|.||.++++.+++.+.+.+++. ++..+|||+||+| +|++|.+++ +
T Consensus 128 ---~~~-----~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~--~~~~~lvee~i~G-~e~~v~v~~----g-- 190 (307)
T 3r5x_A 128 ---ELD-----KLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFE--WDSEVVIEKYIKG-EEITCSIFD----G-- 190 (307)
T ss_dssp ---HHH-----HHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHH--HCSEEEEEECCCS-EEEEEEEET----T--
T ss_pred ---HHH-----hcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh--cCCCEEEECCcCC-EEEEEEEEC----C--
Confidence 111 2578999999999999999999999998877766554 4679999999997 999999983 2
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
.+++..++.. ...+|+|+.||..++ .... |+.++++..++++++|.+++++||++|+++|||++
T Consensus 191 --~~~~~~~~~~----------~~~~~~~~~~~~~~g-~~~~-p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~-- 254 (307)
T 3r5x_A 191 --KQLPIISIRH----------AAEFFDYNAKYDDAS-TIEE-VIELPAELKERVNKASLACYKALKCSVYARVDMMV-- 254 (307)
T ss_dssp --EECCCEEEEE----------EEEEETTEEEEEEEE-EEEE-ECCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEE--
T ss_pred --EEeeEEEEEc----------CCcccChhhcCCCCC-CeEe-cCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEE--
Confidence 1233334432 345899999994333 2333 88999999999999999999999999999999986
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
+ +|++||+|||++||||.+|+||.+++++|++|.+++.++|+.|++|.
T Consensus 255 ---------------~-~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll~~a~~~~ 302 (307)
T 3r5x_A 255 ---------------K-DGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRVR 302 (307)
T ss_dssp ---------------E-TTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---------------E-CCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHhH
Confidence 5 58899999999999999999999999999999999999999999874
No 27
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=100.00 E-value=4.2e-47 Score=431.63 Aligned_cols=345 Identities=22% Similarity=0.306 Sum_probs=256.6
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
|.++||+||+||.|.|||||+.||++|+.+|++ .+|+|++|.+++++.|...... .. ...
T Consensus 1 m~~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~~~~~~~~~~~-------------~~------~~~ 60 (364)
T 2i87_A 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDK-DKYHVDIIYITNDGDWRKQNNI-------------TA------EIK 60 (364)
T ss_dssp --CEEEEEEEECSSSCHHHHHHHHHHHHHTSCT-TTEEEEEEEECTTCCEEEECCC-------------CS------CCC
T ss_pred CCCcEEEEEECCCCccchhHHHHHHHHHHHHhh-cCCEEEEEEEcCCCCEEecccc-------------cc------ccc
Confidence 357899999999999999999999999999974 8999999999987656432100 00 000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 648 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GE 648 (953)
..+.+. . ..+.. . ....+.. .+ ..++.+|+|||.+||.+||
T Consensus 61 ~~~~~~--~--~~~~~--------~----------~~~~~~~-----~~------------~~~~~~D~v~~~~~g~~~e 101 (364)
T 2i87_A 61 STDELH--L--ENGEA--------L----------EISQLLK-----ES------------SSGQPYDAVFPLLHGPNGE 101 (364)
T ss_dssp SGGGSC--G--GGSEE--------E----------CSSGGGG-----BC------------TTSSBCSEEEEECCCSSSC
T ss_pred cchhhc--c--ccccc--------c----------ccccccc-----cc------------ccccCCCEEEEeCCCCCCc
Confidence 000000 0 00000 0 0000000 00 0134579999999999999
Q ss_pred ccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 002207 649 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 728 (953)
Q Consensus 649 dg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvV 728 (953)
||++|++||.+|+||+|+++.++++|+||..+|++ |+++|||+|++..+.+.++.. ...+.+.++.+++ +||+||
T Consensus 102 d~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~~~-~~~~~~~~~~~~~-g~Pvvv 176 (364)
T 2i87_A 102 DGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQL---FEHRGLPQLPYISFLRSEYEK-YEHNILKLVNDKL-NYPVFV 176 (364)
T ss_dssp TTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHH---HHHHTCCCCCEEEEEHHHHHH-HHHHHHHHHHHHC-CSSEEE
T ss_pred CHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHH---HHHCCCCCCCEEEEechhhcc-cchhHHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 899999999999887643210 0001244555678 699999
Q ss_pred ecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchh
Q 002207 729 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 808 (953)
Q Consensus 729 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 808 (953)
||+.+++|.||++|++.++|.. +++.++.+ +..+|||+||+|+
T Consensus 177 KP~~g~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~~lvEe~I~G~--------------- 219 (364)
T 2i87_A 177 KPANLGSSVGISKCNNEAELKE---GIKEAFQF-------------------DRKLVIEQGVNAR--------------- 219 (364)
T ss_dssp EESSCSSCTTCEEESSHHHHHH---HHHHHHTT-------------------CSEEEEEECCCCE---------------
T ss_pred EeCCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCeEEEEeCccCe---------------
Confidence 9999999999999999998875 66666544 5789999999997
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 809 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 809 ~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.+++++.. . +.+..++....+||+|+.||..|.+..++|++ +++++.+++++++.+++++|
T Consensus 220 ----------E~~v~vl~~~~~-~-~~~~~e~~~~~~~~~~~~k~~~g~~~~~~pa~---l~~~~~~~i~~~a~~~~~al 284 (364)
T 2i87_A 220 ----------EIEVAVLGNDYP-E-ATWPGEVVKDVAFYDYKSKYKDGKVQLQIPAD---LDEDVQLTLRNMALEAFKAT 284 (364)
T ss_dssp ----------EEEEEEEESSSC-E-ECCCEEECCSCCC-----------CCEESSCS---SCHHHHHHHHHHHHHHHHHT
T ss_pred ----------EEEEEEEcCCCc-E-EeeeEEEecCCCcCCHHHcccCCCeeEEeCCC---CCHHHHHHHHHHHHHHHHHc
Confidence 999999987532 2 34455665556799999999877777788887 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|+.|++||||+++. +|++|||||||+||+|++|.+++++.+. |..| .+++.++|+.|++|+
T Consensus 285 g~~G~~~vD~~~~~-~g~~~viEiN~rpg~t~~s~~p~~~~~~-G~~~-~~l~~~li~~al~~~ 345 (364)
T 2i87_A 285 DCSGLVRADFFVTE-DNQIYINETNAMPGFTAFSMYPKLWENM-GLSY-PELITKLIELAKERH 345 (364)
T ss_dssp TCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTSHHHHHHHHT-TCCH-HHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEec-CCCEEEEEEeCCCCCCchhHHHHHHHHh-CCCH-HHHHHHHHHHHHHhh
Confidence 99999999999985 6899999999999999999887777765 5556 588999999999874
No 28
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=100.00 E-value=5e-47 Score=430.66 Aligned_cols=328 Identities=21% Similarity=0.264 Sum_probs=247.4
Q ss_pred CCceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccc
Q 002207 489 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 568 (953)
Q Consensus 489 ~~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 568 (953)
..++||+|||||.|.||||||.||++|+++|+ +|+|++|++++++.|...... ..+
T Consensus 18 ~~~~~v~vl~gG~s~E~~vSl~S~~~v~~al~---g~~v~~i~~~~~~~~~~~~~~---------------------~~~ 73 (367)
T 2pvp_A 18 GSHMEFCVLFGGASFEHEISIVSAIALKGVLK---DRIKYFIFLDENHHFYLIEES---------------------NMH 73 (367)
T ss_dssp --CCCEEEEEECSSTTHHHHHHHHHHHHHHHG---GGEEEEEEECTTCCEEECCGG---------------------GCS
T ss_pred ccCCEEEEEECCCCcchhhhHHHHHHHHHHhC---CCeEEEEEECCCCCEEecccc---------------------ccc
Confidence 45679999999999999999999999999996 899999999997666432100 000
Q ss_pred hhhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhc--CCcEEEEecCCCC
Q 002207 569 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKE--NQATVFIAVHGGI 646 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dvvf~~~hG~~ 646 (953)
... ++.. .. +. +... .+....... .+ .+ ..+ .+|+|||++||.+
T Consensus 74 ~~~-~~~~--~~-~~-------~~~~-------~~~~~~~~~-----~~---------~~--~~~~~~~D~v~~~lhg~~ 119 (367)
T 2pvp_A 74 SKY-FAQI--KE-KK-------LPPL-------ILTHNGLLK-----NS---------FL--GAKIIELPLVINLVHGGD 119 (367)
T ss_dssp HHH-HHTG--GG-SC-------CCCB-------EEETTEEEE-----EE---------TT--EEEEEECCSEEECCCSTT
T ss_pred hhh-hccc--cc-cc-------cccc-------cccCcceec-----cc---------cc--cccccCCCEEEEcCCCCC
Confidence 000 0000 00 00 0000 000000000 00 00 012 4799999999999
Q ss_pred CCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcE
Q 002207 647 GEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 726 (953)
Q Consensus 647 GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~Pl 726 (953)
||||++|++||.+|+||+|+++.++++||||..||++ |+++|||+|++..+.+.++. + +.+ .+.+ +||+
T Consensus 120 gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~~-----~-~~~-~~~l-g~Pv 188 (367)
T 2pvp_A 120 GEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLY---AKDLGIKTLDYVLLNEKNRA-----N-ALD-LMNF-NFPF 188 (367)
T ss_dssp TTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHH---HHHHTCBCCCCEEECTTTGG-----G-HHH-HCCS-CSCE
T ss_pred ccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHH---HHHCCcCCCCEEEEeCCchH-----H-HHH-Hhcc-CCCE
Confidence 9999999999999999999999999999999999999 99999999999998765421 1 223 4678 6999
Q ss_pred EEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC-ccccccccccccc
Q 002207 727 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET-DEILFSSQSTNKN 805 (953)
Q Consensus 727 vVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G-~~~~v~~~~~~~~ 805 (953)
||||+++++|.||++|++.++|.. +++.++.+ +..+|||+||+| +
T Consensus 189 vVKP~~g~ss~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlVEe~I~G~~------------ 234 (367)
T 2pvp_A 189 IVKPSNAGSSLGVNVVKEEKELIY---ALDSAFEY-------------------SKEVLIEPFIQGVK------------ 234 (367)
T ss_dssp EEEESSCCTTTTCEEESSTTSHHH---HHHHHTTT-------------------CSCEEEEECCTTCE------------
T ss_pred EEEECCCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCcEEEEeCCCCCc------------
Confidence 999999999999999999999885 67766544 578999999999 6
Q ss_pred chhhhhcCCCceeE---EEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHH
Q 002207 806 ADRLMWKGNSRWVE---ITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIE 882 (953)
Q Consensus 806 ~~~~~~~g~~~~~E---itv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~ 882 (953)
| ++|.+ +|... +.+. ++....+||+|+.||..+.+..++|++ +++++.++++++|.
T Consensus 235 -------------E~svi~v~v---~g~~~-~~~~-ei~~~~~~~d~~~ky~~g~~~~~~Pa~---l~~~~~~~i~~~a~ 293 (367)
T 2pvp_A 235 -------------EYNLAGCKI---KKDFC-FSYI-EEPNKQEFLDFKQKYLDFSRNKAPKAS---LSNALEEQLKENFK 293 (367)
T ss_dssp -------------EEEEEEEEE---TTEEE-EEEE-EETTTTEEECCCCSSCCSCCCSCCCCC---CCHHHHHHHHHHHH
T ss_pred -------------eeeEEEEEE---CCEEE-EEEE-EEecCCceEcccccccCCCeeEEecCC---CCHHHHHHHHHHHH
Confidence 8 66776 33332 2232 565566799999999987766788887 68999999999999
Q ss_pred HHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHH-Hhhcc
Q 002207 883 LIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL-GSERF 952 (953)
Q Consensus 883 ~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~-a~~r~ 952 (953)
+++++|||.|++||||+++ +|++|||||||+||+|+.|.++ .| .+++.+|+.. +++|.
T Consensus 294 ~~~~aLg~~G~~~vDf~~~--~g~~~vlEiN~rpg~t~~s~~p---------~~-~~l~~~li~~~~~~~~ 352 (367)
T 2pvp_A 294 KLYSDLFDGAIIRCDFFVI--ENEVYLNEINPIPGSLANYLFD---------DF-KTTLENLAQSLPKTPK 352 (367)
T ss_dssp HHHTTTSTTCCEEEEEEEE--TTEEEEEEEESSCGGGGGGGSS---------SH-HHHHHHHHHHCC----
T ss_pred HHHHHcCCCCEEEEEEEEE--CCeEEEEEEeCCCCCCcccccC---------CH-HHHHHHHHhCccccCC
Confidence 9999999999999999998 5899999999999999998554 35 4888899888 76664
No 29
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=100.00 E-value=1.5e-43 Score=392.58 Aligned_cols=300 Identities=27% Similarity=0.427 Sum_probs=243.2
Q ss_pred CceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccch
Q 002207 490 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 569 (953)
Q Consensus 490 ~~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 569 (953)
+++||+||+||.|.||+||+.||..|+.+|++ .+|+|+++.++..
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~-~g~~v~~i~~~~~---------------------------------- 46 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNEMIANLDK-NKYEIVPITLNEK---------------------------------- 46 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHHHHSCT-TTEEEEEEECSSG----------------------------------
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHHHHHHHHH-CCCEEEEEcccCc----------------------------------
Confidence 47899999999999999999999999999975 7899887644210
Q ss_pred hhHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCc
Q 002207 570 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 649 (953)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEd 649 (953)
.... . ..+.+|+||+.+||.+|||
T Consensus 47 ~~~~------------------------------~--------------------------~~~~~D~v~~~~~~~~ge~ 70 (307)
T 3r5x_A 47 MDLI------------------------------E--------------------------KAKDIDFALLALHGKYGED 70 (307)
T ss_dssp GGHH------------------------------H--------------------------HTTTCSEEEECCCSHHHHS
T ss_pred hhHH------------------------------H--------------------------hccCCCEEEEeCCCCCCcH
Confidence 0000 0 0023699999999999999
Q ss_pred cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 002207 650 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 729 (953)
Q Consensus 650 g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVK 729 (953)
+.+|++||.+|+||+|+++.++++|+||..++++ |+++|||||++..+.+.+... ..+.+.+ +||+|||
T Consensus 71 ~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~---l~~~Gip~p~~~~~~~~~~~~-------~~~~~~~-~~P~vvK 139 (307)
T 3r5x_A 71 GTVQGTLESLGIPYSGSNMLSSGICMDKNISKKI---LRYEGIETPDWIELTKMEDLN-------FDELDKL-GFPLVVK 139 (307)
T ss_dssp SHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEEESSSCCC-------HHHHHHH-CSSEEEE
T ss_pred HHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHH---HHHCCCCCCCEEEEeChhhhh-------HHHHHhc-CCCEEEE
Confidence 9999999999999999999999999999999999 999999999999998754211 1134567 6999999
Q ss_pred cCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhh
Q 002207 730 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 809 (953)
Q Consensus 730 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 809 (953)
|..+++|.||+++++.+++.. +++.++.+ +..+|||+||+|+
T Consensus 140 P~~~~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvee~i~G~---------------- 181 (307)
T 3r5x_A 140 PNSGGSSVGVKIVYDKDELIS---MLETVFEW-------------------DSEVVIEKYIKGE---------------- 181 (307)
T ss_dssp ECC----CCCEEECSHHHHHH---HHHHHHHH-------------------CSEEEEEECCCSE----------------
T ss_pred eCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCCEEEECCcCCE----------------
Confidence 999999999999999998885 56666554 5789999999997
Q ss_pred hhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccc-cCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 002207 810 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 888 (953)
Q Consensus 810 ~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky-~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aL 888 (953)
|++|.++++. ..+..++....++|+|+.|| .+|.... |++ ++++..+++++.+.+++++|
T Consensus 182 ---------e~~v~v~~g~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~--p~~---l~~~~~~~i~~~a~~~~~~l 242 (307)
T 3r5x_A 182 ---------EITCSIFDGK-----QLPIISIRHAAEFFDYNAKYDDASTIEE--VIE---LPAELKERVNKASLACYKAL 242 (307)
T ss_dssp ---------EEEEEEETTE-----ECCCEEEEEEEEEETTEEEEEEEEEEEE--ECC---CCHHHHHHHHHHHHHHHHHT
T ss_pred ---------EEEEEEECCE-----EeeEEEEEcCCcccChhhcCCCCCCeEe--cCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999998652 23333444456789999999 4444332 665 68999999999999999999
Q ss_pred CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 002207 889 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 952 (953)
Q Consensus 889 g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r~ 952 (953)
|++|++++||+++ +|++||+|||++||||+.|.++.++.+. |..| .+++.+||+.|++|.
T Consensus 243 g~~G~~~vD~~~~--~g~~~vlEiN~rpg~~~~s~~~~~~~~~-G~~~-~~li~~ll~~a~~~~ 302 (307)
T 3r5x_A 243 KCSVYARVDMMVK--DGIPYVMEVNTLPGMTQASLLPKSADAA-GIHY-SKLLDMIIETSLRVR 302 (307)
T ss_dssp TCCSEEEEEEEEE--TTEEEEEEEESSCCCSTTSHHHHHHHHT-TCCH-HHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEE--CCeEEEEEEcCCCCCCccCHHHHHHHHc-CCCH-HHHHHHHHHHHHHhH
Confidence 9999999999998 4899999999999999999877777765 4455 599999999999873
No 30
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=100.00 E-value=1.1e-42 Score=384.57 Aligned_cols=300 Identities=26% Similarity=0.382 Sum_probs=249.8
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
+|||+||+||.|.||++|+.||+.++++|++.||+|+.++.+ +..| . ..
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~-~~~~----------------~----~~---------- 50 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-EVDV----------------T----QL---------- 50 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT-TSCG----------------G----GT----------
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC-chHH----------------H----Hh----------
Confidence 479999999999999999999999999999999999876543 1100 0 00
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh--
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES-- 234 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~-- 234 (953)
....+|+||+.+||.+|||+.++++++.+|+||+|+++.++.+++||..++++|+++|||+|++..+.+.+ ...
T Consensus 51 ---~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~-~~~~~ 126 (306)
T 1iow_A 51 ---KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE-FEKGL 126 (306)
T ss_dssp ---TTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHHH-HHHCC
T ss_pred ---hccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEEEchhh-hhccc
Confidence 01369999999999999999999999999999999999999999999999999999999999999886541 111
Q ss_pred --hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 235 --ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 235 --~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
.+.++. +..+||+||||..+++|.||.++++.+|+.+....++ .++..+|||+||+| +|++|.+++ |
T Consensus 127 ~~~~~~~~-----~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~--~~~~~~lvee~i~g-~e~~v~~~~---g 195 (306)
T 1iow_A 127 SDKQLAEI-----SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF--QHDEEVLIEKWLSG-PEFTVAILG---E 195 (306)
T ss_dssp CTHHHHHH-----HTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHT--TTCSEEEEEECCCC-CEEEEEEET---T
T ss_pred hhhhhhHH-----hccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH--hhCCCEEEEeCcCC-EEEEEEEEC---C
Confidence 000122 1367899999999999999999999999876665543 25789999999997 999999993 2
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 392 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~ 392 (953)
.+++..++. . ...+++|+.+|..+. +.+.+|+.++++..+++++.+.+++++||+.|++++||+
T Consensus 196 -----~~~~~~~~~--~--------~~~~~~~~~~~~~g~-~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~ 259 (306)
T 1iow_A 196 -----EILPSIRIQ--P--------SGTFYDYEAKFLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 (306)
T ss_dssp -----EECCCEEEE--C--------SSSSSCHHHHHTCSC-CEEESSCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred -----CccceEEEE--e--------CCCeEchhheecCCC-eeEEcCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 133333332 1 346889998987654 567889999999999999999999999999999999998
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
+ +++|++||+|||++||++.+|++|.+++++|+++.+++.++++.|
T Consensus 260 ~-----------------~~~g~~~~iEiN~rpg~~~~s~~p~~~~~~G~~~~~~~~~~~~~a 305 (306)
T 1iow_A 260 L-----------------DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 (306)
T ss_dssp E-----------------CTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHTC
T ss_pred E-----------------cCCCCEEEEEecCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 6 678899999999999999999999999999999999999998754
No 31
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=100.00 E-value=6.2e-38 Score=346.50 Aligned_cols=304 Identities=30% Similarity=0.476 Sum_probs=243.9
Q ss_pred ceEEEEecCCCcccceeccccHHHHHHHHhccCCCceEEEEEecccccccCCCCCCCCCCCCCCceEEcCCccccccchh
Q 002207 491 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 570 (953)
Q Consensus 491 ~~~v~vl~GG~s~E~~vS~~s~~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 570 (953)
++||+|++||.|.||++|+.||..++.++++ .+|+++.+ +.+ + ..|.
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~-~G~~v~~~--~~~--------~----------~~~~------------ 48 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPV--DPK--------E----------VDVT------------ 48 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEE--CTT--------T----------SCGG------------
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHH-CCCeEEEE--ecC--------c----------hHHH------------
Confidence 4689999999999999999999999999975 78888754 211 0 0000
Q ss_pred hHHHHhhhhcCccccccccccccceeccccccccccccccccccccCCCCccChHHHHHHhhcCCcEEEEecCCCCCCcc
Q 002207 571 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDG 650 (953)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~~~hG~~GEdg 650 (953)
.+ ....+|+||+.+||.+|||+
T Consensus 49 --------~~--------------------------------------------------~~~~~d~v~~~~~~~~~e~~ 70 (306)
T 1iow_A 49 --------QL--------------------------------------------------KSMGFQKVFIALHGRGGEDG 70 (306)
T ss_dssp --------GT--------------------------------------------------TTTTEEEEEECCCSTTTSSS
T ss_pred --------Hh--------------------------------------------------hccCCCEEEEcCCCCCCcch
Confidence 00 01236999999999999999
Q ss_pred HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 002207 651 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 730 (953)
Q Consensus 651 ~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP 730 (953)
.++++||.+|+||+|+++.++.+|+||..++++ |+++|||+|++..+.+.+.... ....+.++.+++ +||+||||
T Consensus 71 ~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~---l~~~gi~~p~~~~~~~~~~~~~-~~~~~~~~~~~~-~~p~vvKP 145 (306)
T 1iow_A 71 TLQGMLELMGLPYTGSGVMASALSMDKLRSKLL---WQGAGLPVAPWVALTRAEFEKG-LSDKQLAEISAL-GLPVIVKP 145 (306)
T ss_dssp HHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCCBCCEEEEEHHHHHHC-CCTHHHHHHHTT-CSSEEEEE
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHH---HHHCCCCCCCeEEEchhhhhcc-chhhhhhHHhcc-CCCEEEEe
Confidence 999999999999999999999999999999999 8999999999998865421000 000122255678 69999999
Q ss_pred CCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhh
Q 002207 731 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 810 (953)
Q Consensus 731 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 810 (953)
..+++|.||.++++.+++.. +++..+.+ ...+|||+||+|+
T Consensus 146 ~~g~~~~gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvee~i~g~----------------- 186 (306)
T 1iow_A 146 SREGSSVGMSKVVAENALQD---ALRLAFQH-------------------DEEVLIEKWLSGP----------------- 186 (306)
T ss_dssp TTCCTTTTCEEESSGGGHHH---HHHHHTTT-------------------CSEEEEEECCCCC-----------------
T ss_pred CCCCCCCCEEEeCCHHHHHH---HHHHHHhh-------------------CCCEEEEeCcCCE-----------------
Confidence 99999999999999999885 45554322 5789999999997
Q ss_pred hcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 002207 811 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL 890 (953)
Q Consensus 811 ~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~ 890 (953)
|++|.++++ . +.+.+++...+.+|+|+.+|..|.....+|++ ++++..+++++.+.+++++||+
T Consensus 187 --------e~~v~~~~g--~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~---l~~~~~~~i~~~a~~~~~~lg~ 250 (306)
T 1iow_A 187 --------EFTVAILGE--E---ILPSIRIQPSGTFYDYEAKFLSDETQYFCPAG---LEASQEANLQALVLKAWTTLGC 250 (306)
T ss_dssp --------EEEEEEETT--E---ECCCEEEECSSSSSCHHHHHTCSCCEEESSCC---CCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------EEEEEEECC--C---ccceEEEEeCCCeEchhheecCCCeeEEcCCC---CCHHHHHHHHHHHHHHHHHcCC
Confidence 999999943 2 34555655566789999999877777788886 6889999999999999999999
Q ss_pred cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 891 EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 891 ~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
.|+++|||+++. +|++||+|||++||++.+|.++.++.+. |..| .+++.++++.|
T Consensus 251 ~G~~~vD~~~~~-~g~~~~iEiN~rpg~~~~s~~p~~~~~~-G~~~-~~~~~~~~~~a 305 (306)
T 1iow_A 251 KGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQA-GMSF-SQLVVRILELA 305 (306)
T ss_dssp CSEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHT-TCCH-HHHHHHHHHTC
T ss_pred ceEEEEEEEEcC-CCCEEEEEecCCCCCCCCCHHHHHHHHc-CCCH-HHHHHHHHHhc
Confidence 999999999985 6899999999999999998777777665 4455 47777787754
No 32
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=100.00 E-value=6.6e-31 Score=312.27 Aligned_cols=296 Identities=15% Similarity=0.126 Sum_probs=214.4
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--e--cC--------
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--L--QG-------- 228 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~--~~-------- 228 (953)
..++|+|+|. +|..+|++.++++|+.+|+||+|+++.++.++.||..+|++|+++|||+|++.. + ..
T Consensus 137 ~~~vdaV~pG-~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~ 215 (587)
T 3jrx_A 137 RIPVQAVWAG-WGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQG 215 (587)
T ss_dssp HTTCSEEECC-SSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CC
T ss_pred HhCCCEEEeC-CCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeecccccccccccccccc
Confidence 3479999998 788999999999999999999999999999999999999999999999999865 0 00
Q ss_pred -------------CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEecc
Q 002207 229 -------------SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELF 295 (953)
Q Consensus 229 -------------~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEef 295 (953)
.-.+.+++.++.+ .++||+||||..+++|+||.+|++.+|+.+....+.....+..++||+|
T Consensus 216 ~~~~~~~~~~~~~~v~s~eea~~~a~-----~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEey 290 (587)
T 3jrx_A 216 KRISVPEDVYDKGCVKDVDEGLEAAE-----RIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKL 290 (587)
T ss_dssp CCCCCCHHHHHTTSCCSHHHHHHHHH-----HHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEEC
T ss_pred cccccchhhccccccCCHHHHHHHHH-----hcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEe
Confidence 0011122333332 3678999999999999999999999988776666554444678999999
Q ss_pred CCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHH
Q 002207 296 LEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGA 374 (953)
Q Consensus 296 I~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a 374 (953)
|+|.+|++|.++.++.| ..+.+...+.. ++.+..|+ ....|+. +++++.+++++.|
T Consensus 291 I~g~rei~V~vl~D~~G---~vv~l~~rd~s--------------iqrr~qk~------ie~aPa~~l~~~~~~~i~~~A 347 (587)
T 3jrx_A 291 AQHARHLEVQILADQYG---NAVSLFGRDCS--------------IQRRHQKI------VEEAPATIAPLAIFEFMEQCA 347 (587)
T ss_dssp CCSCEEEEEEEEECSSS---CEEEEEEEEEE--------------EESSSCEE------EEEESCCSSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEEcCCC---CEEEEeeeecc--------------ccccccce------eEecCCCCCCHHHHHHHHHHH
Confidence 99879999999986433 23333322111 22222333 3347888 7999999999999
Q ss_pred HHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHH
Q 002207 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGH 454 (953)
Q Consensus 375 ~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~ 454 (953)
.+++++||++|+++|||++ +++|++||+||||+++.+ .|.....+|+++ +..+|+.
T Consensus 348 ~~~a~alGy~G~~~VEfl~-----------------d~dG~~yflEINpRl~~e----~~vte~~tGvdl---v~~~lri 403 (587)
T 3jrx_A 348 IRLAKTVGYVSAGTVEYLY-----------------SQDGSFHFLELNPRLQVE----HPCTEMIADVNL---PAAQLQI 403 (587)
T ss_dssp HHHHHHHTCCEEEEEEEEE-----------------CSSSCEEEEEEESSCCTT----HHHHHHHHTCCH---HHHHHHH
T ss_pred HHHHHHcCCcceeEEEEEE-----------------eCCCCEEEEEEeCCCCCc----cceeccccCCCH---HHHHHHH
Confidence 9999999999999999987 568899999999999854 355556789975 4455666
Q ss_pred HhhhCCC--------------------CC----CCCCcceecccccccCCCccccccCCCceEEEEecCCCcccceecc
Q 002207 455 ACSRFPN--------------------LA----SYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSL 509 (953)
Q Consensus 455 a~~r~~~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~ 509 (953)
|+..--. +. .+.-.+++|++|+.+++|...|.|++|+++-+.+.+|.......+.
T Consensus 404 a~G~pL~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ghaie~Ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~ 482 (587)
T 3jrx_A 404 AMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSV 482 (587)
T ss_dssp HTTCCGGGCHHHHHHTTCCTTCCCCCCSSSCSSCCCCCSEEEEEEEEC----------CCCCEEEECSSCTTEEEEECC
T ss_pred HCCCCcccchhcccccccccccccccccccccccCCCCceEEEEeecccCccccCCCCCcEEEEEEeCCCCceEEeccc
Confidence 6543100 00 0123479999999999999999999999988777777655433333
No 33
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.98 E-value=2.5e-31 Score=314.95 Aligned_cols=296 Identities=15% Similarity=0.129 Sum_probs=203.7
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--e--cC--------
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--L--QG-------- 228 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~--~~-------- 228 (953)
..++|+|+|. +|..+|++.++++|+.+|+||+|+++.++.++.||..+|++|+++|||+|++.. + ..
T Consensus 121 ~~~~daI~pg-~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~ 199 (540)
T 3glk_A 121 RIPVQAVWAG-WGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQG 199 (540)
T ss_dssp HTTCSEEECC-SSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC---
T ss_pred HhCCCEEEeC-CCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccccccccccccccc
Confidence 3479999998 788889999999999999999999999999999999999999999999999865 0 00
Q ss_pred -------------CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEecc
Q 002207 229 -------------SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELF 295 (953)
Q Consensus 229 -------------~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEef 295 (953)
.-...+++.++.+ .++||+||||..+++|+||.+|++.+|+.+....+.....+..++||+|
T Consensus 200 ~~~~~~~~~~~~~~v~s~~ea~~~a~-----~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~ 274 (540)
T 3glk_A 200 KRISVPEDVYDKGCVKDVDEGLEAAE-----RIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKL 274 (540)
T ss_dssp -CCCCCHHHHHHTSCCSHHHHHHHHH-----HHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEEC
T ss_pred cccccccccccccCcCCHHHHHHHHH-----hcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEe
Confidence 0011122333332 2678999999999999999999999988776666554444678999999
Q ss_pred CCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHH
Q 002207 296 LEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGA 374 (953)
Q Consensus 296 I~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a 374 (953)
|+|++|++|.+++++.| ..+.+...+.. ++.+..|+. ...|+. +++++.+++++.|
T Consensus 275 I~g~rei~V~vl~d~~G---~vv~l~~rd~s--------------~qr~~~k~i------e~~Pa~~l~~~~~~~l~~~a 331 (540)
T 3glk_A 275 AQHARHLEVQILADQYG---NAVSLFGRDCS--------------IQRRHQKIV------EEAPATIAPLAIFEFMEQCA 331 (540)
T ss_dssp CSSEEEEEEEEEECTTS---CEEEEEEEEEE--------------EC---CCSE------EEESCTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEEEEcCCC---CEEEEeceeee--------------eeecccceE------EecCCCCCCHHHHHHHHHHH
Confidence 99779999999986433 23333222111 223333432 346887 6999999999999
Q ss_pred HHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHH
Q 002207 375 SLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGH 454 (953)
Q Consensus 375 ~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~ 454 (953)
.+++++||++|+++|||++ +++|++||+||||+++.+ .|.....+|+++ +..+++.
T Consensus 332 ~~~~~alG~~G~~~VEf~~-----------------d~dg~~~~lEiNpR~~~~----~~vte~~tGvdl---~~~~lr~ 387 (540)
T 3glk_A 332 IRLAKTVGYVSAGTVEYLY-----------------SQDGSFHFLELNPRLQVE----HPCTEMIADVNL---PAAQLQI 387 (540)
T ss_dssp HHHHHHHTCCEEEEEEEEE-----------------ETTSCEEEEEEECSCCTT----HHHHHHHHTCCH---HHHHHHH
T ss_pred HHHHHHcCCccceEEEEEE-----------------cCCCCEEEEEEECCCCCc----chhhHhHhCCCH---HHHHHHH
Confidence 9999999999999999986 567899999999999954 255556789975 4455666
Q ss_pred HhhhCCC--------------------CCC----CCCcceecccccccCCCccccccCCCceEEEEecCCCcccceecc
Q 002207 455 ACSRFPN--------------------LAS----YNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSL 509 (953)
Q Consensus 455 a~~r~~~--------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E~~vS~ 509 (953)
|+..--. +.. +.-.+|+|++|+.+++|...|.|++++++-+.+.+|.......+.
T Consensus 388 a~G~pL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~aie~ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~ 466 (540)
T 3glk_A 388 AMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSV 466 (540)
T ss_dssp HTTCCGGGCHHHHHHTTCCSSCCSCCCSCCC----CCCSEEEEEEEC------------CCEEECCCSSCCSEEEEEEC
T ss_pred HCCCCcccccccccccccccccccccccccccccCCCceeEEEEEEeccCCcccccCCceEEEEEEcCCCCcEEEEecc
Confidence 6543110 000 123469999999999999999999999887776776655433333
No 34
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.97 E-value=1e-29 Score=296.32 Aligned_cols=353 Identities=16% Similarity=0.181 Sum_probs=246.8
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc--ccccCcch
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL--AQGFGSLS 154 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 154 (953)
.+||+|+.+|. .|..+++++++.||+++.++-+.+....... . .|..+.+.+. ...+....
T Consensus 6 ~~kiLI~g~g~---------~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~----~----ad~~~~i~~~~~~~~~~d~~ 68 (446)
T 3ouz_A 6 IKSILIANRGE---------IALRALRTIKEMGKKAICVYSEADKDALYLK----Y----ADASICIGKARSSESYLNIP 68 (446)
T ss_dssp CCEEEECCCHH---------HHHHHHHHHHHTTCEEEEEEEGGGTTCTHHH----H----SSEEEEEECCTTTTGGGCHH
T ss_pred cceEEEECCCH---------HHHHHHHHHHHcCCEEEEEEcCcccccchHh----h----CCEEEEcCCCCccccccCHH
Confidence 35899987764 3889999999999999988765542211000 0 0000000000 00000111
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCcc
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEV 231 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~ 231 (953)
.+.+. ...++|+|+|.. |...|+..++..|+.+|+|++|+++.++.++.||..+|++|+++|||+|++. .+.+.+
T Consensus 69 ~l~~~~~~~~~d~i~p~~-g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~- 146 (446)
T 3ouz_A 69 AIIAAAEIAEADAIFPGY-GFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAE- 146 (446)
T ss_dssp HHHHHHHHHTCSEEECCS-STTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHH-
T ss_pred HHHHHHHHhCcCEEEECC-cccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHH-
Confidence 11111 124799999984 7778999999999999999999999999999999999999999999999986 444432
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC----CCCcEEEeccCCCCeEEEEEEE
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----IDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~----~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
++.++.++ ++||+||||..+++|.||.+|++.+|+.+....+.... .+..++||+||+|.+|+++.++
T Consensus 147 ---e~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~ 218 (446)
T 3ouz_A 147 ---AAKKLAKE-----IGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVI 218 (446)
T ss_dssp ---HHHHHHHH-----HCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEE
T ss_pred ---HHHHHHHH-----hCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEE
Confidence 23333332 67899999999999999999999998776655443210 1578999999998789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
.++.| ..+.+...+..+ .....+ .....|+ .+++++.+++++.+.+++++||++|+
T Consensus 219 ~d~~g---~~~~~~~~~~~~--------------~~~~~~------~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~ 275 (446)
T 3ouz_A 219 GDSFG---NVIHVGERDCSM--------------QRRHQK------LIEESPAILLDEKTRTRLHETAIKAAKAIGYEGA 275 (446)
T ss_dssp ECTTS---CEEEEEEEEEEE--------------EETTEE------EEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EcCCC---CEEEEeeceeee--------------eecCce------EEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 75433 233322221111 111111 2335687 59999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCC-CCC
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNL-ASY 465 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~-~~~ 465 (953)
+++||++ +++|++||+||||+|+.+ .|.....+|+++ ++.+++.++...... ...
T Consensus 276 ~~ve~~~-----------------~~~g~~~~iEiNpR~~g~----~~~~~~~~G~dl---~~~~~~~~~G~~l~~~~~~ 331 (446)
T 3ouz_A 276 GTFEFLV-----------------DKNLDFYFIEMNTRLQVE----HCVSEMVSGIDI---IEQMIKVAEGYALPSQESI 331 (446)
T ss_dssp EEEEEEE-----------------CTTCCEEEEEEESSCCTT----HHHHHHHHCCCH---HHHHHHHHTTCCCCCGGGC
T ss_pred eEEEEEE-----------------eCCCCEEEEEeECCCCCc----ceeeeeeeCCCH---HHHHHHHHCCCCCCcCCCC
Confidence 9999987 567889999999999854 344555779975 555666666653221 112
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecCCCccc
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 504 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s~E 504 (953)
...++++++|+.++++ ..|.+..+.++-.-..|+....
T Consensus 332 ~~~g~ai~~ri~ae~~-~~~~p~~G~i~~~~~p~~~~vr 369 (446)
T 3ouz_A 332 KLNGHSIECRITAEDS-KTFLPSPGKITKYIPPAGRNVR 369 (446)
T ss_dssp CCCSEEEEEEEESBCT-TTCCBCCEECSEEECCCSTTEE
T ss_pred CcceEEEEEEeeccCC-CccCCCCcEEeEEecCCCCCEE
Confidence 2346999999999999 7888888887666656665543
No 35
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.96 E-value=2.8e-28 Score=280.39 Aligned_cols=295 Identities=16% Similarity=0.100 Sum_probs=208.4
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
|++.+||+||.||. +|+.+++++++.||+|+.++ +.+..... ..+.. .... ..+..
T Consensus 21 mm~~~~I~ilGgG~---------lg~~l~~aa~~lG~~v~~~d-~~~~p~~~------~ad~~---~~~~----~~~~d- 76 (403)
T 3k5i_A 21 MWNSRKVGVLGGGQ---------LGRMLVESANRLNIQVNVLD-ADNSPAKQ------ISAHD---GHVT----GSFKE- 76 (403)
T ss_dssp CCSCCEEEEECCSH---------HHHHHHHHHHHHTCEEEEEE-STTCTTGG------GCCSS---CCEE----SCTTC-
T ss_pred CCCCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEE-CCCCcHHH------hcccc---ceee----cCCCC-
Confidence 44457999999994 59999999999999999887 55422111 11100 0000 00000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
.+....+..++|++.+-+.-. +..+-..|+. |+| +|+++.++.+++||..+|++|+++|||+|++..+...+ .
T Consensus 77 ~~~l~~~a~~~d~i~~e~e~~---~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~--~ 149 (403)
T 3k5i_A 77 REAVRQLAKTCDVVTAEIEHV---DTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENT--P 149 (403)
T ss_dssp HHHHHHHHTTCSEEEESSSCS---CHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCC--H
T ss_pred HHHHHHHHHhCCEEEECCCCC---CHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCC--H
Confidence 112223345789988754321 3345567788 998 89999999999999999999999999999999987211 1
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
+++.++.+ .++||+||||+.++ +|+|+.++++.+|+.+....+ .+..+|||+||+|++|++|.++++++
T Consensus 150 ~~~~~~~~-----~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~E~sv~v~~~~~- 219 (403)
T 3k5i_A 150 AELAKVGE-----QLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEAL----KDRPLYAEKWAYFKMELAVIVVKTKD- 219 (403)
T ss_dssp HHHHHHHH-----HHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHT----TTSCEEEEECCCEEEEEEEEEEECSS-
T ss_pred HHHHHHHH-----HhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhc----CCCcEEEecCCCCCeEEEEEEEEcCC-
Confidence 12333332 25789999999998 999999999999977655442 25789999999955999999997532
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+ ..+.++.+... .+.+ ......|+. +++++.++++++|.+++++||++|+++|||
T Consensus 220 --g-~~~~p~~~~~~----------~~g~-----------~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~ 275 (403)
T 3k5i_A 220 --E-VLSYPTVETVQ----------EDSI-----------CKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEM 275 (403)
T ss_dssp --C-EEECCCEEEEE----------ETTE-----------EEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEE
T ss_pred --C-EEEeCCeeeEE----------eCCE-----------EEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEE
Confidence 2 33344433221 1111 123457998 999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
++ +++|++||+||||+||.+.+.. ..++|+|. +...++.++.
T Consensus 276 ~~-----------------~~dg~~~v~EiNpR~~~sg~~~----~~~~~~s~---~~~~~ra~~G 317 (403)
T 3k5i_A 276 FL-----------------LEDDSIMLCEIASRIHNSGHYT----IEGCALSQ---FDAHLRAILD 317 (403)
T ss_dssp EE-----------------ETTSCEEEEEEESSCCGGGTTH----HHHBSSCH---HHHHHHHHTT
T ss_pred EE-----------------eCCCcEEEEEeecCCCCCCcee----eeecCCCH---HHHHHHHHcC
Confidence 87 5688999999999999764322 24568875 4444554444
No 36
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.96 E-value=3.2e-29 Score=304.20 Aligned_cols=364 Identities=18% Similarity=0.156 Sum_probs=248.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc--ccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL--AQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (953)
+||+|+.+|.. |..+++++++.||+++.++-+.+........ .|..+.+.+. ...+.....
T Consensus 29 ~kILI~g~Gei---------a~~iiraar~lGi~~vav~s~~d~~a~~~~~--------AD~~~~i~~~~~~~syld~~~ 91 (675)
T 3u9t_A 29 QRLLVANRGEI---------ACRVMRSARALGIGSVAVHSDIDRHARHVAE--------ADIAVDLGGAKPADSYLRGDR 91 (675)
T ss_dssp SEEEECCCHHH---------HHHHHHHHHHHTCEEEEEECSGGGGCHHHHT--------CSEEEECCCSSGGGTTTCHHH
T ss_pred CEEEEECCCHH---------HHHHHHHHHHCCCEEEEEECCCCCCchhHhh--------CCEEEEcCCCccccCccCHHH
Confidence 58999887742 8999999999999999887655432211100 0100111000 001111112
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEE--ecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFL--LQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~--~~~~~~~ 232 (953)
+.+. ...++|+|+|.. |...|+..++..|+..|++|+|+++.++.++.||..+|++|+++|||+|+++. +.+.+
T Consensus 92 i~~~a~~~~~daI~pg~-gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~~~~~s~~-- 168 (675)
T 3u9t_A 92 IIAAALASGAQAIHPGY-GFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLE-- 168 (675)
T ss_dssp HHHHHHHTTCSEEECCS-STTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCCSCCCCTT--
T ss_pred HHHHHHHhCcCEEEeCC-cccccCHHHHHHHHHcCCceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCccccCCCCHH--
Confidence 2221 134799999976 66779999999999999999999999999999999999999999999999875 33322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++.++.+ .++||+||||..+++|+||.+|++.+|+.+....+... ..++.++||+||+|.+|+++.++.
T Consensus 169 --e~~~~a~-----~igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~ 241 (675)
T 3u9t_A 169 --TFRREAG-----RIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFA 241 (675)
T ss_dssp --HHHHHHH-----HSCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEE
T ss_pred --HHHHHHH-----hCCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEE
Confidence 2333332 36889999999999999999999999977655432211 015689999999987999999998
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+++|+ .+.+ .+... .+.....| .....|+. +++++.++|.+.|.++++++|++|++
T Consensus 242 d~~G~---vv~l--~~rd~------------s~qr~~qk------~ie~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~ 298 (675)
T 3u9t_A 242 DRHGH---CLYL--NERDC------------SIQRRHQK------VVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAG 298 (675)
T ss_dssp CSSSC---EEEE--EEEEC------------CCBSSSSB------CEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred cCCCC---EEEE--ecccc------------ceeeccce------EEEECCCCCCCHHHHHHHHHHHHHHHHHcCCccce
Confidence 65433 3322 11110 01111111 23456876 99999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
+|||++ +++|++||+||||+++.+ .|.....+|+++ ++.+++.|+.....+.+ .
T Consensus 299 ~vEf~~-----------------~~dG~~~~iEiNpR~~~~----~~~te~~tGvdl---~~~~l~~a~G~~l~~~~~~~ 354 (675)
T 3u9t_A 299 TVEFLL-----------------DERGQFFFMEMNTRLQVE----HPVTEAITGLDL---VAWQIRVARGEALPLTQEQV 354 (675)
T ss_dssp EEECCB-----------------CTTSCBCBCEEESSCCTT----HHHHHHTTTCCH---HHHHHHHHTTCCCSCCTTTC
T ss_pred EEEEEE-----------------cCCCCEEEEeccccccCC----chhhhhhcCCCH---HHHHHHHHCCCCCCCCcccc
Confidence 999986 568899999999999864 244445679975 56667777776332221 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEec-CCCcccceeccccHHHH
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIF-GGDTSERQVSLMSGTNV 515 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~-GG~s~E~~vS~~s~~~v 515 (953)
...++++++|+.+++|...|.++.++++-.-.. +|...+-+..+..|..|
T Consensus 355 ~~~g~ai~~ri~aedp~~~f~P~~G~l~~~~~p~~~~gvr~d~~~~~G~~v 405 (675)
T 3u9t_A 355 PLNGHAIEVRLYAEDPEGDFLPASGRLMLYREAAAGPGRRVDSGVREGDEV 405 (675)
T ss_dssp CCCSEEEEEEEESCCTTTTSCCCCCBCSEEECCCCCTTEEEEESCCTTCBC
T ss_pred ccCcceeEEEEEeccCcccccCCCCEEEEEECCCCCCCEEEEecccCCCEe
Confidence 234799999999999999999999987766655 66666555555555433
No 37
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.96 E-value=1.5e-27 Score=276.17 Aligned_cols=302 Identities=16% Similarity=0.135 Sum_probs=202.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++|++|++||... ..|++++++.||+|+.++-+.+......... +.-+.+.... ......+.
T Consensus 5 ~k~l~Il~~~~~~---------~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~--------d~~~~~~~~~-d~~~~~~~ 66 (425)
T 3vot_A 5 NKNLAIICQNKHL---------PFIFEEAERLGLKVTFFYNSAEDFPGNLPAV--------ERCVPLPLFE-DEEAAMDV 66 (425)
T ss_dssp CCEEEEECCCTTC---------CHHHHHHHHTTCEEEEEEETTSCCCCSCTTE--------EEEEEECTTT-CHHHHHHH
T ss_pred CcEEEEECCChhH---------HHHHHHHHHCCCEEEEEECCCcccccCHhhc--------cEEEecCCCC-CHHHHHHH
Confidence 3679999988753 3578999999999988765443111000000 0000000000 00000011
Q ss_pred HHh--hccCcCEEEEcCCCCCCCch--HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccc
Q 002207 157 AEH--LAANVDIVFPTIHGRFGEDG--GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVN 232 (953)
Q Consensus 157 ~~~--~~~~~D~vf~~lhG~~GEdg--~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~ 232 (953)
+.. ....+|.|++.. |.. ....+.|.+|+| |+++.++.+|+||..+|++|+++|||||++..+.+.++
T Consensus 67 ~~~~~~~~~id~V~~~~-----e~~~~~~a~l~e~lglp--g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~- 138 (425)
T 3vot_A 67 VRQTFVEFPFDGVMTLF-----EPALPFTAKAAEALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTLAD- 138 (425)
T ss_dssp HHHHHHHSCCSEEECCC-----GGGHHHHHHHHHHTTCS--SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSGGG-
T ss_pred HHHhhhhcCCCEEEECC-----chhHHHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcHHH-
Confidence 111 234799998753 333 245677999999 89999999999999999999999999999999876542
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---------CCCCcEEEeccCCCCeEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---------GIDDRVVVELFLEGGSEFT 303 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---------~~~~~vlVEefI~Gg~E~t 303 (953)
+.. ..++||+||||..+++|+||.+|++.+|+.++..++... ..+..++||+||+| +|++
T Consensus 139 ---~~~-------~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~e~s 207 (425)
T 3vot_A 139 ---LEN-------RKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG-PEFA 207 (425)
T ss_dssp ---GTT-------CCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS-CEEE
T ss_pred ---HHH-------hhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC-cEEE
Confidence 111 247899999999999999999999999987665543221 13568999999998 9999
Q ss_pred EEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 002207 304 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGL 383 (953)
Q Consensus 304 v~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~ 383 (953)
|.++.. ++...++...+... ....+.. ...+.+|+.++++..+++++.+.+++++||+
T Consensus 208 v~~~~~----~g~~~~~~~~~~~~----------------~~~~~~~--~~~~~~Pa~l~~~~~~~i~~~~~~~~~alg~ 265 (425)
T 3vot_A 208 IETLSI----QGNVHVLSIGYKGN----------------SKGPFFE--EGVYIAPAQLKEETRLAIVKEVTGAVSALGI 265 (425)
T ss_dssp EEEEEE----TTEEEEEEEEEEEC----------------CCCSBCC--CCEEEESCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEe----CCcEEEEeEEEEec----------------cCCCccc--cceEeecccCCHHHHHHHHHHHHHHHHHcCC
Confidence 999853 23344433332210 1112221 2456789999999999999999999999999
Q ss_pred C-CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 384 C-DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 384 ~-G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+ |++++||++ +++|++||+|||++||.+..+.+ ....++|+|+. +.+++.++..
T Consensus 266 ~~G~~~ve~~~-----------------~~dG~~~~iEiN~R~gG~~~~~~-l~~~~~G~d~~---~~~i~~alg~ 320 (425)
T 3vot_A 266 HQGPAHTELRL-----------------DKDGTPYVIEVGARIGGSGVSHY-IVKESTGINFM---QLVLQNALKP 320 (425)
T ss_dssp CSEEEEEEEEE-----------------CTTCCEEEEEEESSCGGGGHHHH-HHHHHHCCCHH---HHHHHHHHSC
T ss_pred CcceEEEEEEE-----------------EeCCcEEEEEEecCCCCCCchHH-HHHHHHCCCHH---HHHHHHHCCC
Confidence 6 999999986 68899999999999987654322 23346799864 4556677653
No 38
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.96 E-value=1.2e-27 Score=279.15 Aligned_cols=341 Identities=15% Similarity=0.138 Sum_probs=228.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc--ccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL--AQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (953)
+||+|+.+|. .|..+++++++.||+|+.++.+.+........ .+..+.+.+. ...+.....
T Consensus 2 k~ilI~g~g~---------~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~--------ad~~~~i~~~~~~~~~~d~~~ 64 (451)
T 2vpq_A 2 KKVLIANRGE---------IAVRIIRACRDLGIQTVAIYSEGDKDALHTQI--------ADEAYCVGPTLSKDSYLNIPN 64 (451)
T ss_dssp CEEEECCCHH---------HHHHHHHHHHHTTCEEEEEEEGGGTTCHHHHH--------SSEEEEEECSSGGGTTTCHHH
T ss_pred ceEEEeCCCH---------HHHHHHHHHHHcCCEEEEEecccccccchhhh--------CCEEEEcCCCCccccccCHHH
Confidence 4799887663 38889999999999999887655422110000 0000000000 001111111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|++. +|...|++.++.+|+.+|+|++|+++.++.+++||..+|++|+++|||+|++. .+.+.+
T Consensus 65 l~~~~~~~~~d~v~~~-~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~-- 141 (451)
T 2vpq_A 65 ILSIATSTGCDGVHPG-YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVS-- 141 (451)
T ss_dssp HHHHHHHTTCSEEECC-SSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHH--
T ss_pred HHHHHHHcCCCEEEEC-CCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCCHH--
Confidence 1111 13579999998 46778899999999999999999999999999999999999999999999976 554432
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
++.++++. ++||+||||..+++|.||.+|++.+|+.+....++.. . .+..++||+||+|++|+++.++.
T Consensus 142 --~~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~ 214 (451)
T 2vpq_A 142 --EAKKIAKK-----IGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVG 214 (451)
T ss_dssp --HHHHHHHH-----HCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEE
T ss_pred --HHHHHHHh-----cCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEE
Confidence 23333322 5789999999999999999999999887666544321 0 24689999999976799999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
+++| ..+.+. +... .+..++. ......|+. +++++.+++++.+.+++++||++|++
T Consensus 215 ~~~G---~~~~~~--~~~~---------------~~~~~~~---~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~ 271 (451)
T 2vpq_A 215 DSYG---NVIHLG--ERDC---------------TIQRRMQ---KLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAG 271 (451)
T ss_dssp CTTS---CEEEEE--EEEE---------------EEEETTE---EEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCC---CEEEEe--cccc---------------chhcccc---ceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceE
Confidence 5432 232221 1110 0111111 123446887 99999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS-- 464 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~-- 464 (953)
++||++ + ++|++||+|||++|+.+ ++....++|+++.+ .+++.++........
T Consensus 272 ~ve~~~-----------------~~~~g~~~viEiN~R~~~~----~~~~~~~~g~dl~~---~~~~~~~G~~~~~~~~~ 327 (451)
T 2vpq_A 272 TIEFIY-----------------DLNDNKFYFMEMNTRIQVE----HPVTEMVTGIDLVK---LQLQVAMGDVLPYKQED 327 (451)
T ss_dssp EEEEEE-----------------ETTTTEEEEEEEECSCCTT----HHHHHHHHCCCHHH---HHHHHHTTCCCSCCGGG
T ss_pred EEEEEE-----------------ECCCCCEEEEEeeCCCCCc----eehhhHHhCCCHHH---HHHHHHCCCCCCCcccc
Confidence 999986 5 67899999999999843 35555678997644 455566655322110
Q ss_pred CCCcceecccccccCCCccccccCCCce
Q 002207 465 YNSVSSHLPGRSSGSKPTEALNKREGIR 492 (953)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (953)
....++++.+++.+.++...+.+..+.+
T Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~p~~g~i 355 (451)
T 2vpq_A 328 IKLTGHAIEFRINAENPYKNFMPSPGKI 355 (451)
T ss_dssp CCCCSEEEEEEEESEEGGGTTEECCSBC
T ss_pred cCcCceEeeeEeeeeccccccCCCCCEE
Confidence 1112345555665554433344444443
No 39
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.96 E-value=9.5e-28 Score=304.85 Aligned_cols=352 Identities=15% Similarity=0.170 Sum_probs=239.7
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc---ccccCc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL---AQGFGS 152 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 152 (953)
+.+||+|+.+|. .|..+++++++.|++++.++-+.+........ .|..+.+... ...+..
T Consensus 3 ~~kkVLIagrGe---------ia~riiraa~elGi~vVav~s~~d~~s~~~~~--------ADe~~~ig~~~~~~~syld 65 (1150)
T 3hbl_A 3 QIKKLLVANRGE---------IAIRIFRAAAELDISTVAIYSNEDKSSLHRYK--------ADESYLVGSDLGPAESYLN 65 (1150)
T ss_dssp CCCEEEECCCHH---------HHHHHHHHHHHTTCEEEEEECGGGTTCGGGGT--------SSEEEECCTTSCTTGGGTC
T ss_pred CCCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEEcCCcccchhhhh--------cceeeecCCCCCccccccC
Confidence 345888877653 27789999999999999887655422111000 1111111000 001111
Q ss_pred chhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCC
Q 002207 153 LSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGS 229 (953)
Q Consensus 153 ~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~ 229 (953)
...+.+. ...++|+|+|. +|...|+..++..|+.+|+||+|+++.++.++.||..+|++|+++|||+|++. .+.+.
T Consensus 66 ~~~Ii~~a~~~~~DaI~pg-~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~ 144 (1150)
T 3hbl_A 66 IERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY 144 (1150)
T ss_dssp HHHHHHHHHHTTCSEEECT-TTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSS
T ss_pred HHHHHHHHHHhCCCEEEEC-CCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCH
Confidence 1122221 23479999998 67788999999999999999999999999999999999999999999999987 45443
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC----CCCcEEEeccCCCCeEEEEE
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----IDDRVVVELFLEGGSEFTAI 305 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~----~~~~vlVEefI~Gg~E~tv~ 305 (953)
+. +.++. ..++||+||||..+++|+||.+|++.+|+.+....+.... .+..++||+||+|.+|++|.
T Consensus 145 ee----a~~~a-----~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~ 215 (1150)
T 3hbl_A 145 EL----AKEFA-----EEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQ 215 (1150)
T ss_dssp ST----TTTTG-----GGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEE
T ss_pred HH----HHHHH-----HHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEE
Confidence 32 22222 2378999999999999999999999988776655433211 15689999999987899999
Q ss_pred EEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCC
Q 002207 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLC 384 (953)
Q Consensus 306 Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~ 384 (953)
++.++.|+ .+.+...... +... ........|+ .++++..++|.+.|.++++++|++
T Consensus 216 vl~d~~G~---vv~l~er~~s-----------------~qr~---~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~ 272 (1150)
T 3hbl_A 216 VIGDEHGN---IVHLFERDCS-----------------VQRR---HQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYV 272 (1150)
T ss_dssp EEECSSSC---EEEEEEEEEE-----------------EESS---SCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCC---EEEEEeeccc-----------------eecc---CceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99865432 2222211111 1111 1224456888 599999999999999999999999
Q ss_pred CeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCC---
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN--- 461 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~--- 461 (953)
|.+++||++ +++ ++||+||||+++.+ .+.....+|+++ ++.+++.|+..-..
T Consensus 273 G~~~vEflv-----------------d~d-~~y~iEINpR~~g~----~~vte~~tGvDl---v~~~i~ia~G~~L~~~~ 327 (1150)
T 3hbl_A 273 NAGTVEFLV-----------------SGD-EFFFIEVNPRVQVE----HTITEMVTGIDI---VKTQILVAAGADLFGEE 327 (1150)
T ss_dssp EEEEEEEEE-----------------ETT-EEEEEEEECSCCTT----HHHHHHHHCCCH---HHHHHHHHTTCCTTSTT
T ss_pred ceEEEEEEE-----------------ECC-eEEEEEEeCCCCCC----cceeehhcCCCH---HHHHHHHHCCCCCCccc
Confidence 999999986 455 79999999999854 244455789975 56677777765221
Q ss_pred CCCCC-----CcceecccccccCCCccccccCCCceEEEEecCCCc
Q 002207 462 LASYN-----SVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 502 (953)
Q Consensus 462 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG~s 502 (953)
+..+. ..++++++|+.+++|...|.++++++..+...+|..
T Consensus 328 ~~~~~q~~i~~~G~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~g 373 (1150)
T 3hbl_A 328 INMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFG 373 (1150)
T ss_dssp TCCCCGGGCCCCSEEEEEEECSEEGGGTSEECCCCCCEEECCCCTT
T ss_pred cccccccccccceEEEEEEEeccCCccccCCCCceEEEEEcCCCCc
Confidence 11111 236999999999999989999888887766666544
No 40
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.96 E-value=2e-27 Score=272.07 Aligned_cols=279 Identities=19% Similarity=0.157 Sum_probs=201.5
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
+||+||.||. +|+.+++++++.||+|+.++.+++.. .... .+..+ . ..+... +..
T Consensus 15 k~IlIlG~G~---------~g~~la~aa~~~G~~vi~~d~~~~~~------~~~~----ad~~~-~----~~~~d~-~~l 69 (389)
T 3q2o_A 15 KTIGIIGGGQ---------LGRMMALAAKEMGYKIAVLDPTKNSP------CAQV----ADIEI-V----ASYDDL-KAI 69 (389)
T ss_dssp SEEEEECCSH---------HHHHHHHHHHHTTCEEEEEESSTTCT------TTTT----CSEEE-E----CCTTCH-HHH
T ss_pred CEEEEECCCH---------HHHHHHHHHHHcCCEEEEEeCCCCCc------hHHh----CCceE-e----cCcCCH-HHH
Confidence 5899999998 39999999999999998775443311 1000 01000 0 001111 111
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+...+|+|.+... ..+..+...|+..|+ +|+++.++.+++||..+|++|+++|||+|++..+.+.+. +.
T Consensus 70 ~~~~~~~dvI~~~~e---~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~----~~ 140 (389)
T 3q2o_A 70 QHLAEISDVVTYEFE---NIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQ----LT 140 (389)
T ss_dssp HHHHHTCSEEEESCC---CCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSHHH----HH
T ss_pred HHHHHhCCEeeeccc---cccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHH----HH
Confidence 222346899855432 234344556666676 789999999999999999999999999999998876542 33
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCC-ceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGS-SIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gs-S~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
++.+ .++||+||||..+++ |.|+.++++.+|+.+..... .+..+|||+||+|++|++|.++++.+ +.
T Consensus 141 ~~~~-----~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~----~~~~~lvEe~i~g~~E~~v~~~~~~~---G~ 208 (389)
T 3q2o_A 141 EAIA-----ELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLA----NAAECILEKWVPFEKEVSVIVIRSVS---GE 208 (389)
T ss_dssp HHHH-----HHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHH----HHSCEEEEECCCCSEEEEEEEEECTT---CC
T ss_pred HHHH-----hcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhc----CCCCEEEEecccCceEEEEEEEEcCC---CC
Confidence 3332 267899999999976 79999999999977665443 14689999999977999999997533 33
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.+++++.+... ..+++ .....|+.+++++.+++++++.+++++||++|+++|||++
T Consensus 209 ~~~~~~~e~~~----------~~g~~-----------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~--- 264 (389)
T 3q2o_A 209 TKVFPVAENIH----------VNNIL-----------HESIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFA--- 264 (389)
T ss_dssp EEECCCEEEEE----------ETTEE-----------EEEEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE---
T ss_pred EEEecCeeeEE----------cCCce-----------EEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEE---
Confidence 45555554321 11121 2445788999999999999999999999999999999987
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~ 444 (953)
+++|++||+||||+||.+.+.. ..++|+|.
T Consensus 265 --------------~~dg~~~viEiNpR~~~s~~~~----~~~~g~~~ 294 (389)
T 3q2o_A 265 --------------TADGEIYINELAPRPHNSGHYT----QDACETSQ 294 (389)
T ss_dssp --------------CTTSCEEEEEEESSCCGGGTTH----HHHBSSCH
T ss_pred --------------eCCCCEEEEEeeCCCCCchhHH----HHHcCCCH
Confidence 5788999999999999775432 46789984
No 41
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.96 E-value=1e-28 Score=300.12 Aligned_cols=348 Identities=18% Similarity=0.184 Sum_probs=202.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (953)
+||+|+.+| + .|..+++++++.||+++.++-+.+........+ |..+.+.+ ....+.....
T Consensus 3 ~kiLIanrG-----e----ia~riiraar~lGi~~vav~sd~d~~a~~~~~a--------D~~~~i~p~~~~~syld~~~ 65 (681)
T 3n6r_A 3 NKILIANRG-----E----IACRVIKTARKMGISTVAIYSDADKQALHVQMA--------DEAVHIGPPPANQSYIVIDK 65 (681)
T ss_dssp CCBCBSCCH-----H----HHHHHHHHHGGGSCCBCCEECSTTSSCHHHHHS--------SCCEECSSSSGGGTTSCHHH
T ss_pred CEEEEECCc-----H----HHHHHHHHHHHcCCEEEEEEcCCCCCChhHHhC--------CEEEEcCCCCcccCccCHHH
Confidence 478888766 2 388999999999999998865554322111000 00001100 0001111112
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ....+|+|+|.. |...|+..++..|+.+|+||+|+++.++.++.||..+|++|+++|||+|+++ .+.+.+.
T Consensus 66 i~~~a~~~~~daI~pg~-gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e- 143 (681)
T 3n6r_A 66 VMAAIRATGAQAVHPGY-GFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADE- 143 (681)
T ss_dssp HHHHHHHTCCSCCBCCS-SSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC-----------
T ss_pred HHHHHHHhCcCEEEECC-CccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCCHHH-
Confidence 2221 134799988876 5677999999999999999999999999999999999999999999999985 3433322
Q ss_pred hhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEEE
Q 002207 233 ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
+.++. ..++||+||||..+++|+||.+|++.+|+.+....+... . .++.++||+||+|.+|+++.++.
T Consensus 144 ---~~~~a-----~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~ 215 (681)
T 3n6r_A 144 ---AVKIS-----NQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLC 215 (681)
T ss_dssp -------------------------------------------------------------------CCSCEEEEEEEEC
T ss_pred ---HHHHH-----HhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEE
Confidence 22222 247899999999999999999999999877655543221 1 25689999999987899999997
Q ss_pred eCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCee
Q 002207 309 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFA 387 (953)
Q Consensus 309 ~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~a 387 (953)
++.| ..+.+...+. .+.....| .....|+. +++++.++|.+.+.++++++|++|++
T Consensus 216 d~~G---~vv~l~~rd~--------------s~qr~~~k------~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~ 272 (681)
T 3n6r_A 216 DSHG---NGIYLGEREC--------------SIQRRNQK------VVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAG 272 (681)
T ss_dssp CSSS---CCEEEEEEEC--------------CCEETTEE------CEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEE
T ss_pred eCCC---CEEEEeeeec--------------ceeccCcc------EEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceE
Confidence 5433 3333222110 11111112 23456886 99999999999999999999999999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCCC--C
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS--Y 465 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~~--~ 465 (953)
++||++ +++|++||+||||+++.+ .|.....+|+++ ++.+++.++.....+.+ .
T Consensus 273 ~vEf~~-----------------d~dg~~~~lEiNpR~~~~----~~~te~~tGvdl---~~~~l~~a~G~~l~~~~~~~ 328 (681)
T 3n6r_A 273 TVEFIV-----------------DGQKNFYFLEMNTRLQVE----HPVTELITGVDL---VEQMIRVAAGEPLSITQGDV 328 (681)
T ss_dssp EEEEEE-----------------CTTSCCCCCEEECSCCTT----HHHHHHHHTCCH---HHHHHHHHTSCCCSSCTTTC
T ss_pred EEEEEE-----------------eCCCCEEEEecccccCCC----cHHhHHHhCCCH---HHHHHHHHCCCCCCCCcccc
Confidence 999987 568899999999999854 355545689964 56667777776333322 1
Q ss_pred CCcceecccccccCCCccccccCCCceEEEEecC
Q 002207 466 NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFG 499 (953)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~G 499 (953)
...++++++|+.+++|...|.+++++++-+-..+
T Consensus 329 ~~~g~ai~~ri~aedp~~~f~p~~G~i~~~~~p~ 362 (681)
T 3n6r_A 329 KLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPA 362 (681)
T ss_dssp CCCSEEEEEEEESEEGGGTTEECCEECSCEECCC
T ss_pred ceeEEEEEEEEecCCcccccCCCCcEEEEEECCC
Confidence 2347999999999999999999988876655554
No 42
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.95 E-value=5.8e-28 Score=308.06 Aligned_cols=306 Identities=12% Similarity=0.106 Sum_probs=210.4
Q ss_pred CcCeEEEEecCCC-----CchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccccccc
Q 002207 76 RVLRVGLICGGPS-----AERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGF 150 (953)
Q Consensus 76 ~~~kV~vl~GG~S-----~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (953)
.++||+||+||.+ .|+|+| +.+++++|++.||+|+.++.+++ +...+. ...+ ..+.++.. +
T Consensus 558 ~~~kVlVlG~G~~riG~~~Efd~~---~~~~~~al~~~G~~vi~v~~np~--~~s~~~------~~ad-~~~~~p~~--~ 623 (1073)
T 1a9x_A 558 DREKIMVLGGGPNRIGQGIEFDYC---CVHASLALREDGYETIMVNCNPE--TVSTDY------DTSD-RLYFEPVT--L 623 (1073)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHH---HHHHHHHHHHTTCEEEEECCCTT--SSTTST------TSSS-EEECCCCS--H
T ss_pred cCcEEEEecCCccccccccccchh---HHHHHHHHHhcCCEEEEEecCCc--cccccc------cccc-EEEeccch--h
Confidence 4579999999875 799997 66779999999999987765443 110000 0000 01111110 0
Q ss_pred CcchhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCc
Q 002207 151 GSLSEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSE 230 (953)
Q Consensus 151 ~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~ 230 (953)
..+..+.+ .+++|.|++.++|... -.++..|+.+|+|++|+++.++.+++||..++++|+++|||+|++..+.+.+
T Consensus 624 e~v~~i~~--~e~~d~Vi~~~g~~~~--~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s~e 699 (1073)
T 1a9x_A 624 EDVLEIVR--IEKPKGVIVQYGGQTP--LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIE 699 (1073)
T ss_dssp HHHHHHHH--HHCCSEEECSSSTHHH--HTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSHH
T ss_pred hhhhhhhh--hcCcceEEeecCCchH--HHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECCHH
Confidence 00111111 2479999998876433 2467889999999999999999999999999999999999999999887644
Q ss_pred cchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 231 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
. +.++.+ .++||+||||..+++|.||.+|++.+|+.+...+++....+..+|||+||+|.+|++|.++.++
T Consensus 700 e----a~~~~~-----~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~~E~~V~~l~d~ 770 (1073)
T 1a9x_A 700 M----AVEKAK-----EIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDG 770 (1073)
T ss_dssp H----HHHHHH-----HHCSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCTTCEEEEEEEEECS
T ss_pred H----HHHHHH-----HcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCCcEEEEEEEEEC
Confidence 2 333332 2678999999999999999999999998877765543223568999999998449999999743
Q ss_pred CCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeEe
Q 002207 311 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFARI 389 (953)
Q Consensus 311 ~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~arV 389 (953)
. ..++....+.. ...++..+. +...+|+ .++++..+++++++.+++++||++|+++|
T Consensus 771 ~----~v~~~~i~e~~-----------------~~~g~~~gd-~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~v 828 (1073)
T 1a9x_A 771 E----MVLIGGIMEHI-----------------EQAGVHSGD-SACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNV 828 (1073)
T ss_dssp S----CEEEEEEEEES-----------------SCTTSCGGG-CCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred C----eEEEEeeEEEE-----------------eccCCccCC-ceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Confidence 1 22222222210 012233232 3455676 79999999999999999999999999999
Q ss_pred eeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 390 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 390 Df~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
||++ + +|++||+||||+|+ +.+|...+++|+++.+++.+++
T Consensus 829 df~v-----------------~-~~~~~viEvNpR~~----~~~~~~~~~tGi~l~~~~~~~~ 869 (1073)
T 1a9x_A 829 QFAV-----------------K-NNEVYLIEVNPRAA----RTVPFVSKATGVPLAKVAARVM 869 (1073)
T ss_dssp EEEE-----------------C-SSCEEEEEEECSCC----TTHHHHHHHHSCCHHHHHHHHH
T ss_pred EEEE-----------------E-CCeEEEEEEECCCc----cHHHHHHHHHCcCHHHHHHHHH
Confidence 9986 3 67899999999998 3468888899999988876654
No 43
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.95 E-value=3.9e-27 Score=271.77 Aligned_cols=237 Identities=19% Similarity=0.137 Sum_probs=177.2
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++|+|++. +|++.++++++.++. ++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+++
T Consensus 69 ~~~d~V~~~-----~E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~e----~~~~~- 137 (412)
T 1vkz_A 69 PEEDIVIPG-----SEEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEE----LREKI- 137 (412)
T ss_dssp CSSCEECCS-----SGGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSHHH----HHHHH-
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEECCHHH----HHHHH-
Confidence 579999992 577777899999998 8899999999999999999999999999999988866432 33333
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc--CCC--CcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE--GID--DRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~--~~~--~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
+.++||+||||..+++|.||.+|++.+|+.+.+.+++.. .++ ..+|||+||+| +|++|.++.++ . .
T Consensus 138 ----~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~G-~E~sv~~~~dg--~---~ 207 (412)
T 1vkz_A 138 ----KKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAG-NELSAMAVVNG--R---N 207 (412)
T ss_dssp ----TTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCS-EEEEEEEEEET--T---E
T ss_pred ----HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCcC-cEEEEEEEECC--C---E
Confidence 236789999999999999999999999988776665432 132 38999999997 99999999632 1 1
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh-----CCCCeeEeeee
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL-----GLCDFARIDGW 392 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL-----g~~G~arVDf~ 392 (953)
+...+. .+- ....++++.++..++ +....|+.+++++.+++++++.+++++| +++|+.++||+
T Consensus 208 ~~~~~~-~~~----------~~~~~~~~~~~~~g~-~~~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~ 275 (412)
T 1vkz_A 208 FVILPF-VRD----------YKRLMDGDRGPNTGG-MGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLM 275 (412)
T ss_dssp EEECCC-CEE----------CCEEETTTEEEECSC-SEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEE
T ss_pred EEEeee-eEe----------eeeccCCCCCCCCCC-ceEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEE
Confidence 211111 110 234566666665544 4566898899999999999999999999 78899999998
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
+ +++| +||+|||++||.+.+ +.+....|.++.+++..++
T Consensus 276 ~-----------------~~~g-~~viEiN~R~g~~~~---~~~~~~~g~d~~~~~~~~~ 314 (412)
T 1vkz_A 276 L-----------------HDGD-PYILEYNVRLGDPET---EVIVTLNPEGFVNAVLEGY 314 (412)
T ss_dssp E-----------------ETTE-EEEEEEESSCCTTHH---HHHHHHCHHHHHHHHHHHH
T ss_pred E-----------------ECCC-cEEEEEecCCCCCcc---eeehhhcCCCHHHHHHHHh
Confidence 6 5678 999999999996643 2233346776665554443
No 44
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.95 E-value=6.4e-27 Score=273.83 Aligned_cols=342 Identities=15% Similarity=0.151 Sum_probs=227.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc---ccccCcch
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL---AQGFGSLS 154 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 154 (953)
+||+|+.+|. .+..+++++++.||+|+.++.+.+...... .. .+..+.+... ...+....
T Consensus 7 k~ILI~g~g~---------~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~----~~----ad~~~~i~~~~~~~~~y~d~~ 69 (461)
T 2dzd_A 7 RKVLVANRGE---------IAIRVFRACTELGIRTVAIYSKEDVGSYHR----YK----ADEAYLVGEGKKPIEAYLDIE 69 (461)
T ss_dssp SEEEECSCHH---------HHHHHHHHHHHHTCEEEEEECGGGTTCTHH----HH----SSSEEECSTTSCTTGGGTCHH
T ss_pred cEEEEECCcH---------HHHHHHHHHHHcCCEEEEEECCcccccchh----hh----CCEEEEcCCCCCccccccCHH
Confidence 4899886552 377899999999999998876544211000 00 0000000000 00000011
Q ss_pred hHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCcc
Q 002207 155 EFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEV 231 (953)
Q Consensus 155 ~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~ 231 (953)
.+.+. ...++|+|++.. |..+|+..++..|+.+|+|++|+++.++.+++||..+|++|+++|||+|++. .+.+.+
T Consensus 70 ~l~~~~~~~~id~v~~~~-g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~- 147 (461)
T 2dzd_A 70 GIIEIAKAHDVDAIHPGY-GFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLE- 147 (461)
T ss_dssp HHHHHHHHTTCCEEECCS-SSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHH-
T ss_pred HHHHHHHHhCCCEEEECC-CccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCCHH-
Confidence 11111 134799999985 7778998899999999999999999999999999999999999999999986 454432
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEE
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
++.++++. ++||+||||..+++|.||.++++.+|+.+....++.. . .+..++||+||+|++|+++.++
T Consensus 148 ---~~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~ 219 (461)
T 2dzd_A 148 ---DVVAFAEA-----HGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQIL 219 (461)
T ss_dssp ---HHHHHHHH-----HCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEE
T ss_pred ---HHHHHHHh-----cCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEE
Confidence 23333322 5789999999999999999999999877665544321 1 2468999999998789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
.+++| ..+.+.. ... ..... +. ......|+ .+++++.+++++.+.+++++||+.|+
T Consensus 220 ~~~~G---~~~~~~~--~~~------------~~~~~---~~---~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~ 276 (461)
T 2dzd_A 220 GDYEG---NIVHLYE--RDC------------SVQRR---HQ---KVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNA 276 (461)
T ss_dssp ECTTC---CEEEEEE--EEE------------EEEET---TE---EEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EcCCC---CEEEEEe--ccc------------ccccc---cc---ceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 75433 2222111 100 01110 10 12334677 69999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh-CCCC--C
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR-FPNL--A 463 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r-~~~~--~ 463 (953)
+++||++ ++ |++||+|||+++|.+ .+.....+|+++.++ +++.++.. .+.. .
T Consensus 277 ~~ve~~~-----------------~~-~~~~viEiN~R~~~~----~~~~~~~~g~dl~~~---~~~~~~G~~l~~~~~~ 331 (461)
T 2dzd_A 277 GTVEFLV-----------------SG-DEFYFIEVNPRIQVE----HTITEMITGIDIVQS---QILIADGCSLHSHEVG 331 (461)
T ss_dssp EEEEEEE-----------------ET-TEEEEEEEESSCCGG----GHHHHHHHCCCHHHH---HHHHHTTCCTTSTTTC
T ss_pred eEEEEEE-----------------eC-CCEEEEEEECCCCCc----eeeEEeecCCCHHHH---HHHHHcCCCccccccc
Confidence 9999986 45 779999999999853 233445679986554 56666653 2221 1
Q ss_pred CCC-----CcceecccccccCCCccccccCCCceEE
Q 002207 464 SYN-----SVSSHLPGRSSGSKPTEALNKREGIREV 494 (953)
Q Consensus 464 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v 494 (953)
++. ..++++..|+.+.++...|.+..+..++
T Consensus 332 ~~~~~~~~~~g~~~~~ri~~~~~~~~~~p~~g~i~~ 367 (461)
T 2dzd_A 332 IPKQEDIRINGYAIQSRVTTEDPLNNFMPDTGKIMA 367 (461)
T ss_dssp CCCGGGCCCCSEEEEEEEESEEGGGTTEECCEECSE
T ss_pred cccccccccceeEEEeeecccCCccCccCCCCeeeE
Confidence 211 2357777777776665445554454444
No 45
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.95 E-value=1.8e-27 Score=277.68 Aligned_cols=307 Identities=16% Similarity=0.161 Sum_probs=212.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc-ccccCcchhH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL-AQGFGSLSEF 156 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (953)
+||+|+.+|. .+..+++++++.||+|+.++-+.+...... .. .+..+...+. ...+.....+
T Consensus 3 k~ilI~g~g~---------~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~----~~----ad~~~~~~p~~~~~~~d~~~l 65 (451)
T 1ulz_A 3 NKVLVANRGE---------IAVRIIRACKELGIPTVAIYNEVESTARHV----KL----ADEAYMIGTDPLDTYLNKQRI 65 (451)
T ss_dssp SSEEECCCHH---------HHHHHHHHHHHHTCCEEEEECGGGTTCHHH----HH----SSEEEECCSSTTHHHHCHHHH
T ss_pred ceEEEECCcH---------HHHHHHHHHHHcCCeEEEEechhhcccchh----hh----CcEEEEcCCCcccccCCHHHH
Confidence 4799987662 278899999999999998765443211000 00 0000000000 0000000111
Q ss_pred HHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccch
Q 002207 157 AEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNE 233 (953)
Q Consensus 157 ~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~~ 233 (953)
.+. ...++|+|++. +|...|++.++.+|+.+|+|++|+++.++.+++||..+|++|+++|||+|++. .+.+.+
T Consensus 66 ~~~~~~~~~d~v~~~-~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~--- 141 (451)
T 1ulz_A 66 INLALEVGADAIHPG-YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLE--- 141 (451)
T ss_dssp HHHHHHTTCCEEECC-SSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHH---
T ss_pred HHHHHHcCCCEEEEC-CCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHH---
Confidence 111 13579999987 46678899899999999999999999999999999999999999999999987 454432
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---CC-CCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GI-DDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~~-~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
++.++++. .+||+||||..+++|.||.+|++.+|+.+....++.. .+ +..++||+||+|++|+++.++.+
T Consensus 142 -~~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~ 215 (451)
T 1ulz_A 142 -EAKALARE-----IGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGD 215 (451)
T ss_dssp -HHHHHHHH-----HCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEEC
T ss_pred -HHHHHHHH-----cCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEc
Confidence 23333322 5789999999999999999999999987666544321 12 46899999999768999999975
Q ss_pred CCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeE
Q 002207 310 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFAR 388 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ar 388 (953)
.+| ..+.+.. .. +++..++. ......|+. ++++..+++++.+.+++++||++|+++
T Consensus 216 ~~G---~~~~~~~--~~---------------~~~~~~~~---~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ 272 (451)
T 1ulz_A 216 KHG---NVIHLGE--RD---------------CSIQRRNQ---KLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGT 272 (451)
T ss_dssp TTS---CEEEEEE--EE---------------EEEEETTE---EEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCC---CEEEEee--ee---------------cccccccc---cceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceE
Confidence 332 2332221 11 11111221 123346876 999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+||++ +++|++||+|||++|+.+ .|....++|+++.+ .+++.++..
T Consensus 273 ve~~~-----------------~~~g~~~viEiN~R~~~~----~~~~~~~~g~dl~~---~~~~~~~G~ 318 (451)
T 1ulz_A 273 MEFIA-----------------DQEGNLYFIEMNTRIQVE----HPVSEMVTGIDIVK---WQIKIAAGE 318 (451)
T ss_dssp EEEEE-----------------CTTCCEEEEEEECSCCTT----HHHHHHHHCCCHHH---HHHHHHTTC
T ss_pred EEEEE-----------------eCCCCEEEEEeeCCCCcc----chHHHHHhCCCHHH---HHHHHHcCC
Confidence 99986 678899999999999843 35555678997644 445555554
No 46
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.95 E-value=1.6e-27 Score=277.98 Aligned_cols=306 Identities=17% Similarity=0.170 Sum_probs=213.3
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccCcchh
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFGSLSE 155 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (953)
+||+|+.+|. ++..+++++++.||+|+.++.+.+..+.... . .+..+...+ ....+.....
T Consensus 3 k~ilI~g~g~---------~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~----~----ad~~~~~~p~~~~~~~~d~~~ 65 (449)
T 2w70_A 3 DKIVIANRGE---------IALRILRACKELGIKTVAVHSSADRDLKHVL----L----ADETVCIGPAPSVKSYLNIPA 65 (449)
T ss_dssp SEEEECCCHH---------HHHHHHHHHHHHTCEEEEEEEGGGTTCHHHH----H----SSEEEEEECSSGGGTTTCHHH
T ss_pred ceEEEeCCcH---------HHHHHHHHHHHcCCeEEEEeccccccCchhh----h----CCEEEEcCCCCccccccCHHH
Confidence 4799887762 3788999999999999988765543211000 0 000000000 0001111111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccc
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVN 232 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~ 232 (953)
+.+. ...++|+|++. +|...|++.++.+|+.+|+|++|+++.++.+++||..+|++|+++|||+|++. .+.+.+.
T Consensus 66 l~~~~~~~~~d~v~~~-~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~- 143 (449)
T 2w70_A 66 IISAAEITGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMD- 143 (449)
T ss_dssp HHHHHHHHTCCEEECC-SSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHH-
T ss_pred HHHHHHHcCCCEEEEC-CCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCCHHH-
Confidence 1111 12479999987 56778998899999999999999999999999999999999999999999986 5554332
Q ss_pred hhhh-hhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEE
Q 002207 233 ESEL-SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 233 ~~~~-~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl 307 (953)
+ .++++. ++||+||||..+++|.||.+|++.+|+.+....++.. . .+..++||+||+|++|++|.++
T Consensus 144 ---~~~~~~~~-----~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~ 215 (449)
T 2w70_A 144 ---KNRAIAKR-----IGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVL 215 (449)
T ss_dssp ---HHHHHHHH-----HCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEE
T ss_pred ---HHHHHHHH-----hCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEE
Confidence 2 333322 5789999999999999999999999887665544321 0 1468999999997789999999
Q ss_pred EeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCe
Q 002207 308 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDF 386 (953)
Q Consensus 308 ~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~ 386 (953)
.+.+| ..+.+... . +++..++. ......|+. +++++.+++++.+.+++++||++|+
T Consensus 216 ~~~~G---~~~~~~~~--~---------------~~~~~~~~---~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~ 272 (449)
T 2w70_A 216 ADGQG---NAIYLAER--D---------------CSMQRRHQ---KVVEEAPAPGITPELRRYIGERCAKACVDIGYRGA 272 (449)
T ss_dssp ECTTS---CEEEEEEE--E---------------EEEEETTE---EEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred EcCCC---CEEEEece--e---------------cccccCCc---ceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCce
Confidence 75332 23322211 0 11212221 123457876 9999999999999999999999999
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++||++ ++ |++||+|||++|+.+ ++....++|+++.++ +++.++..
T Consensus 273 ~~ve~~~-----------------~~-~~~~viEiN~R~~~~----~~~~~~~~g~dl~~~---~~~~~~G~ 319 (449)
T 2w70_A 273 GTFEFLF-----------------EN-GEFYFIEMNTRIQVE----HPVTEMITGVDLIKE---QLRIAAGQ 319 (449)
T ss_dssp EEEEEEE-----------------ET-TEEEEEEEECSCCTT----HHHHHHHHCCCHHHH---HHHHHHTC
T ss_pred EEEEEEE-----------------EC-CCEEEEEEECCCCcc----chHHHHHhCCCHHHH---HHHHHCCC
Confidence 9999986 45 779999999999843 455556789986554 45555554
No 47
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.95 E-value=3.9e-27 Score=270.75 Aligned_cols=303 Identities=17% Similarity=0.128 Sum_probs=206.0
Q ss_pred cCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCc
Q 002207 73 RGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGS 152 (953)
Q Consensus 73 ~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (953)
+|.+.+||+|+.+|.. +..+++++++.||+++.++. .+.+. +.... .+..+... ...
T Consensus 3 ~m~~~~~ilI~g~g~~---------~~~~~~a~~~~G~~~v~v~~-~~~~~----~~~~~----ad~~~~~~-----~~d 59 (403)
T 4dim_A 3 AMYDNKRLLILGAGRG---------QLGLYKAAKELGIHTIAGTM-PNAHK----PCLNL----ADEISYMD-----ISN 59 (403)
T ss_dssp ---CCCEEEEECCCGG---------GHHHHHHHHHHTCEEEEEEC-SSCCH----HHHHH----CSEEEECC-----TTC
T ss_pred cccCCCEEEEECCcHh---------HHHHHHHHHHCCCEEEEEcC-CCCCC----cchhh----CCeEEEec-----CCC
Confidence 3555679999988853 45688999999999987742 11010 00000 00000000 000
Q ss_pred chhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCcc
Q 002207 153 LSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEV 231 (953)
Q Consensus 153 ~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~ 231 (953)
...+.+. ...++|+|+|. |...+...+..+++.+|+| |+++.++.++.||..++++|+++|||+|++..+.+.+
T Consensus 60 ~~~l~~~~~~~~~d~v~~~--~~~~~~~~~a~~~~~~gl~--g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~- 134 (403)
T 4dim_A 60 PDEVEQKVKDLNLDGAATC--CLDTGIVSLARICDKENLV--GLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNEN- 134 (403)
T ss_dssp HHHHHHHTTTSCCSEEECC--SCSTTHHHHHHHHHHHTCS--SCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSHH-
T ss_pred HHHHHHHHHHcCCCEEEeC--CcchhHHHHHHHHHHcCcC--CCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCHH-
Confidence 1111121 13479999985 4444455778899999996 8999999999999999999999999999998776543
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
++.++.+ .++||+||||..+++|.||.+|++.+|+.+....+.....+..+|||+||+| +|+++.++..
T Consensus 135 ---~~~~~~~-----~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~e~sv~~~~~-- 203 (403)
T 4dim_A 135 ---ELKNALE-----NLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEG-YEFGAQAFVY-- 203 (403)
T ss_dssp ---HHHHHHH-----TSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCS-EEEEEEEEEE--
T ss_pred ---HHHHHHh-----cCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCC-cEEEEEEEEE--
Confidence 2333332 3678999999999999999999999998877766655445678999999998 9999999852
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCC-eeEee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCD-FARID 390 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G-~arVD 390 (953)
+++..++.+.+ .+.+..++. ....+..|+.+++++.+++++.+.+++++||++| .+++|
T Consensus 204 --~g~~~~~~~~~----------------~~~~~~~~~--~~~~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve 263 (403)
T 4dim_A 204 --KNDVLFVMPHG----------------DETYMSHTA--VPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVD 263 (403)
T ss_dssp --TTEEEEEEEEE----------------EEEEESSSE--EEEEEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred --CCEEEEEEEec----------------ceeccCCCC--cceeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 22333322221 112222221 1245567889999999999999999999999998 89999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHH-HHHHhCCCHHHHHHHHHHHHhhh
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQ-QASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~-~a~~~G~s~~~ll~~li~~a~~r 458 (953)
|++ + +|++||+|||++||- +.+|. .....|+++ ++.+++.++..
T Consensus 264 ~~~-----------------~-~~~~~~iEiN~R~~~---~~~~~~~~~~~G~d~---~~~~~~~~~G~ 308 (403)
T 4dim_A 264 MIL-----------------K-DNEVYIIELTGRVGA---NCLPELVEINYGIEY---YKMIASMAISE 308 (403)
T ss_dssp EEE-----------------E-TTEEEEEEEESSCCS---TTHHHHHHHHHTSCH---HHHHHHHHTTC
T ss_pred EEE-----------------E-CCcEEEEEEcCCCCC---CcHHHHHHHHhCcCH---HHHHHHHHcCC
Confidence 986 4 678999999999994 34443 345789985 44456666654
No 48
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.95 E-value=1.2e-26 Score=263.53 Aligned_cols=287 Identities=13% Similarity=0.056 Sum_probs=199.9
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+|+.||. +|+.+++++++.||+++.++.+++..... . .+. +.. .......+.+
T Consensus 1 ~iliiG~g~---------~g~~~~~a~~~~G~~v~~~~~~~~~~~~~------~----a~~-~~~-----~~~d~~~l~~ 55 (369)
T 3aw8_A 1 MIGILGGGQ---------LGRMLALAGYPLGLSFRFLDPSPEACAGQ------V----GEL-VVG-----EFLDEGALLR 55 (369)
T ss_dssp CEEEECCSH---------HHHHHHHHHTTBTCCEEEEESCTTCGGGG------T----SEE-EEC-----CTTCHHHHHH
T ss_pred CEEEECCCH---------HHHHHHHHHHHcCCEEEEEeCCCCChHHH------h----hce-Eec-----CCCCHHHHHH
Confidence 689998885 38899999999999988766443211100 0 000 000 0001111112
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
...++|+|++..+... ..+...|+.+| ++|+++.++.+++||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 56 -~~~~~d~v~~~~e~~~---~~~~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 125 (369)
T 3aw8_A 56 -FAEGLALVTYEFENVP---VEAARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPED----LEE 125 (369)
T ss_dssp -HHTTCSEEEECCTTCC---HHHHHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSHHH----HHH
T ss_pred -HHhCCCEEEECCCCcC---HHHHHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCHHH----HHH
Confidence 2258999999886543 33445778889 6899999999999999999999999999999998876432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
+. ..++||+||||..++ +|.||.++++.+|+.+....+ .+..++||+||++|+|+++.++.+++ +..
T Consensus 126 ~~-----~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~----~~~~~lvEe~i~~g~e~sv~~~~d~~---G~~ 193 (369)
T 3aw8_A 126 GL-----KRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKAL----GGRGLILEGFVPFDREVSLLAVRGRT---GEV 193 (369)
T ss_dssp HH-----TTTCSSEEEEECCC------EEEECSHHHHHHHHTTT----CSSSEEEEECCCCSEEEEEEEEECTT---SCE
T ss_pred HH-----HHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhc----CCCcEEEEEcCCCCEEEEEEEEECCC---CCE
Confidence 32 236789999999999 999999999999987655432 25789999999933999999997533 234
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
+.++..+... ...+++ ....|+. ++++..+++++++.+++++||++|++++||++
T Consensus 194 ~~~~~~~~~~----------~~~~~~-----------~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~--- 249 (369)
T 3aw8_A 194 AFYPLVENRH----------WGGILR-----------LSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQ--- 249 (369)
T ss_dssp EECCCEEEEE----------ETTEEE-----------EEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEE---
T ss_pred EEECCeeeee----------eCCEEE-----------EEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEE---
Confidence 4444443211 111211 2457888 99999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++ |++||+||||+||.+.++. . .+.|.+. +..+++.++..
T Consensus 250 --------------~~-~~~~viEiN~R~~~~~~~~--~--~~~g~~~---~~~~~~~~~g~ 289 (369)
T 3aw8_A 250 --------------VG-EELLFNEMAPRVHNSGHWT--I--EGAETSQ---FENHLRAVLGL 289 (369)
T ss_dssp --------------ET-TEEEEEEEESSCCGGGTTH--H--HHBSSCH---HHHHHHHHHTC
T ss_pred --------------EC-CcEEEEEEeCCcCCcccee--e--eeecCCH---HHHHHHHHcCC
Confidence 45 7899999999999876553 2 2578863 44455555554
No 49
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.95 E-value=2.8e-27 Score=264.32 Aligned_cols=305 Identities=17% Similarity=0.119 Sum_probs=201.9
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
+|||+|++|| +++.+++++++.||+|+.++.+.+...+. . ....+....... + .+
T Consensus 2 ~m~Ililg~g----------~~~~l~~a~~~~G~~v~~~~~~~~~~~~~---~----~~~~~~~~~~~~----~---~d- 56 (334)
T 2r85_A 2 KVRIATYASH----------SALQILKGAKDEGFETIAFGSSKVKPLYT---K----YFPVADYFIEEK----Y---PE- 56 (334)
T ss_dssp CSEEEEESST----------THHHHHHHHHHTTCCEEEESCGGGHHHHH---T----TSCCCSEEECSS----C---CH-
T ss_pred ceEEEEECCh----------hHHHHHHHHHhCCCEEEEEECCCCCcccc---c----ccccCceEecCC----c---Ch-
Confidence 4799999999 48999999999999998776543210000 0 000000000000 0 00
Q ss_pred HHhhccCcCEEEEcCCCCCCCchHHH--HHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDGGIQ--EVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg~iq--~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~ 234 (953)
+.+...+|+|+|. +|+...+ ..||.+|+|++++ +.++.+++||..++++|+++|||+|++ +.+.+
T Consensus 57 -~~l~~~~d~i~~~-----~e~~~~~~~~~le~~g~~~~~~-~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~~---- 123 (334)
T 2r85_A 57 -EELLNLNAVVVPT-----GSFVAHLGIELVENMKVPYFGN-KRVLRWESDRNLERKWLKKAGIRVPEV--YEDPD---- 123 (334)
T ss_dssp -HHHHHTTEEECCC-----TTHHHHHCHHHHHTCCSCBBSC-TTHHHHHHSHHHHHHHHHHTTCCCCCB--CSCGG----
T ss_pred -HHhcccCCEEEEC-----cchhhhhHHHHHHHcCCCccCC-HHHHHHHHhHHHHHHHHHHcCCCCCCc--cCChH----
Confidence 1122356887743 3444333 3558999998865 588999999999999999999999998 33211
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---CCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
.+.||+||||..+++|.||.++++.+|+......++.. .....+|||+||+| .|+++.++-+..
T Consensus 124 ------------~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~G-~e~~~~~~~~~~ 190 (334)
T 2r85_A 124 ------------DIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-VPVYPHYFYSKV 190 (334)
T ss_dssp ------------GCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCCC-EEEEEEEEEETT
T ss_pred ------------HcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccCC-ceeEEEEeecCc
Confidence 14589999999999999999999999987666554321 12268999999998 999866653211
Q ss_pred CCccccEEecceEEEEeccCccccccCCccccc--ccCccCC-CceEEEc---CCCCCHHHHHHHHHHHHHHHHHh----
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNY--RRKYLPT-QQVAYHT---PPRFPIVVINSIREGASLLFQRL---- 381 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy--~~Ky~~~-~~~~~~~---Pa~l~~~~~~~i~~~a~~~~~aL---- 381 (953)
++... .....+++... .++++++ ..++..+ ....... |+.+++++.+++++++.+++++|
T Consensus 191 ~~~v~-~~~~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~l~~~~~~~i~~~a~~~~~~l~~~~ 260 (334)
T 2r85_A 191 REELE-LMSIDRRYESN---------VDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELM 260 (334)
T ss_dssp TTEEE-EEEEEEEEEEE---------GGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred Cceee-eeeeccEEEec---------cCcccccccccccccccCCceeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhc
Confidence 11000 11112333221 1123321 1111110 0012223 88899999999999999999999
Q ss_pred -CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCC-CCc----chHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 382 -GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM-EQT----SFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 382 -g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~-t~~----S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
++.|++++||++ +++|++||+|||++||. +.. +.||.+....|+++.+.+..+|+.|
T Consensus 261 ~~~~G~~~vd~~~-----------------~~~g~~~viEiN~R~g~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~i~~~ 323 (334)
T 2r85_A 261 GGLWGPFCLEGVF-----------------TPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREA 323 (334)
T ss_dssp SCCCEEEEEEEEE-----------------CTTSCEEEEEEECSCCGGGGGGTTCCTTGGGTCSSCCCHHHHHHHHHHHH
T ss_pred ccccccEEEEEEE-----------------CCCCCEEEEEEeCCcCCCceeeecCccchheeecCcccHHHHHHHHHHHH
Confidence 899999999986 57789999999999998 433 3678777677999999999999999
Q ss_pred hhhC
Q 002207 456 CSRF 459 (953)
Q Consensus 456 ~~r~ 459 (953)
+++.
T Consensus 324 ~~~~ 327 (334)
T 2r85_A 324 IEND 327 (334)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9863
No 50
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.95 E-value=1e-26 Score=265.22 Aligned_cols=286 Identities=18% Similarity=0.116 Sum_probs=196.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
+||+||.||. +|+.++++|++.||+|+.++.+++..... . .+..+ .. .......+
T Consensus 2 ~~Ililg~g~---------~g~~~~~a~~~~G~~v~~~~~~~~~~~~~------~----~~~~~-~~----~~~d~~~l- 56 (380)
T 3ax6_A 2 KKIGIIGGGQ---------LGKMMTLEAKKMGFYVIVLDPTPRSPAGQ------V----ADEQI-VA----GFFDSERI- 56 (380)
T ss_dssp CEEEEECCSH---------HHHHHHHHHHHTTCEEEEEESSTTCTTGG------G----SSEEE-EC----CTTCHHHH-
T ss_pred CEEEEECCCH---------HHHHHHHHHHHCCCEEEEEeCCCCCchhh------h----CceEE-EC----CCCCHHHH-
Confidence 4899999883 58999999999999988765443311000 0 00000 00 00001111
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+..++|+|++..+.. ...+...|+.+|+| +|+++.++.+++||..+|++|+++|||+|++..+.+.+.
T Consensus 57 ~~~~~~~d~v~~~~e~~---~~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~------ 126 (380)
T 3ax6_A 57 EDLVKGSDVTTYDLEHI---DVQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLES------ 126 (380)
T ss_dssp HHHHHTCSEEEESCSCS---CHHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSHHH------
T ss_pred HHHHhcCCEEEecccCC---CHHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCHHH------
Confidence 11224799999976422 13455678999999 789999999999999999999999999999988765331
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
+++ ..+||+||||..++ +|.||.++++.+|+.+. ....+|||+||++|+|+++.++.+++| .
T Consensus 127 -~~~-----~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~--------~~~~~lvEe~i~~g~e~sv~~~~~~~G---~ 189 (380)
T 3ax6_A 127 -DVR-----EFGFPVVQKARKGGYDGRGVFIIKNEKDLENA--------IKGETYLEEFVEIEKELAVMVARNEKG---E 189 (380)
T ss_dssp -HHH-----TTCSSEEEEESCCC-----EEEECSGGGGGGC--------CCSSEEEEECCCEEEEEEEEEEECSSC---C
T ss_pred -HHH-----hcCCCEEEEecCCCCCCCCeEEECCHHHHHHH--------hcCCEEEEeccCCCeeEEEEEEECCCC---C
Confidence 221 36789999999999 99999999999886432 126899999999339999999974332 3
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.+++++.+. +++... .. .....+|+.+++++.+++++++.+++++||++|++++||++
T Consensus 190 ~~~~~~~~~---------------~~~~~~-~~---~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~--- 247 (380)
T 3ax6_A 190 IACYPVVEM---------------YFDEDA-NI---CDTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFL--- 247 (380)
T ss_dssp EEEEEEEEE---------------C------------CEEEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEE---
T ss_pred EEEECCeee---------------eecccC-Ce---eEEEECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEE---
Confidence 333333221 110000 00 01245788899999999999999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++|++||+|||++||.+.+. . ..+.|.+. +..+++.++..
T Consensus 248 --------------~~~g~~~viEiN~R~~~~~~~--~--~~~~~~~~---~~~~~~~~~g~ 288 (380)
T 3ax6_A 248 --------------TKQGEILVNEIAPRPHNSGHY--T--IEACVTSQ---FEQHIRAIMNL 288 (380)
T ss_dssp --------------ETTSCEEEEEEESSCCGGGTH--H--HHHBSSCH---HHHHHHHHTTC
T ss_pred --------------eCCCcEEEEEecCCCCCCcee--e--hhhccccH---HHHHHHHHhCC
Confidence 678899999999999976543 2 23578864 45556655553
No 51
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.95 E-value=4.5e-27 Score=268.02 Aligned_cols=275 Identities=15% Similarity=0.147 Sum_probs=192.4
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
.+||+||.||.. |+.+++++++.||+|+.++.+++.. +... .+. .... .+.. .+.
T Consensus 12 ~~~IlIlG~G~l---------g~~la~aa~~lG~~viv~d~~~~~p------~~~~----ad~-~~~~----~~~d-~~~ 66 (377)
T 3orq_A 12 GATIGIIGGGQL---------GKMMAQSAQKMGYKVVVLDPSEDCP------CRYV----AHE-FIQA----KYDD-EKA 66 (377)
T ss_dssp TCEEEEECCSHH---------HHHHHHHHHHTTCEEEEEESCTTCT------TGGG----SSE-EEEC----CTTC-HHH
T ss_pred CCEEEEECCCHH---------HHHHHHHHHHCCCEEEEEECCCCCh------hhhh----CCE-EEEC----CCCC-HHH
Confidence 468999998854 8899999999999998775444311 1100 000 0000 0000 111
Q ss_pred HHhhccCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 157 AEHLAANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 157 ~~~~~~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
...+..++|+|.+-+ |+- .+..+.+.. ++++++.++.+++||..+|++|+++|||+|++..+.+.+.
T Consensus 67 l~~~~~~~dvi~~~~-----E~~~~~~l~~l~~~~---~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~-- 136 (377)
T 3orq_A 67 LNQLGQKCDVITYEF-----ENISAQQLKLLCEKY---NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTD-- 136 (377)
T ss_dssp HHHHHHHCSEEEESS-----TTSCHHHHHHHHHHS---CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSSTH--
T ss_pred HHHHHHhCCcceecc-----cccCHHHHHHHhhhc---CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHH--
Confidence 122233589986655 332 244444443 4568999999999999999999999999999998877543
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
+.++.+ .++||+||||..++ +|.|+.++++.+|+.+....+ ....+|||+||+|.+|++|.++++.
T Consensus 137 --~~~~~~-----~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~----~~~~~ivEe~i~g~~E~sv~~~~~~-- 203 (377)
T 3orq_A 137 --IDKAIE-----TLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLI----ETSECVAEKYLNIKKEVSLTVTRGN-- 203 (377)
T ss_dssp --HHHHHH-----HTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHH----TTSCEEEEECCCEEEEEEEEEEECG--
T ss_pred --HHHHHH-----HcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhc----CCCcEEEEccCCCCEEEEEEEEEeC--
Confidence 333332 26789999999998 799999999999977665543 2478999999997689999999632
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 392 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~ 392 (953)
++...++++.+... .++++ .....|+.+++ .++++++|.+++++||++|+++|||+
T Consensus 204 -~g~~~~~~~~e~~~----------~~g~~-----------~~~~~Pa~l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~ 259 (377)
T 3orq_A 204 -NNQITFFPLQENEH----------RNQIL-----------FKTIVPARIDK--TAEAKEQVNKIIQSIHFIGTFTVEFF 259 (377)
T ss_dssp -GGCEEECCCEEEEE----------ETTEE-----------EEEEESCSSCC--HHHHHHHHHHHHTTSCCCEEEEEEEE
T ss_pred -CCCEEEECCEeEEE----------ECCEE-----------EEEECCCCCCH--HHHHHHHHHHHHHHCCCeEEEEEEEE
Confidence 33445555554421 11111 23457888887 88999999999999999999999998
Q ss_pred ecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCH
Q 002207 393 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 444 (953)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~ 444 (953)
+ +++|++||+||||+||-+.+ +.. .++++|.
T Consensus 260 ~-----------------~~~g~~~v~EinpR~~~sg~--~t~--~~~~~s~ 290 (377)
T 3orq_A 260 I-----------------DSNNQLYVNEIAPRPHNSGH--YSI--EACDYSQ 290 (377)
T ss_dssp E-----------------ETTCCEEEEEEESSCCGGGT--THH--HHBSSCH
T ss_pred E-----------------eCCCcEEEEEeeCCcCCCCc--Eee--hhcCCCH
Confidence 7 56789999999999995432 221 3567764
No 52
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.95 E-value=1.8e-26 Score=275.79 Aligned_cols=279 Identities=14% Similarity=0.115 Sum_probs=204.5
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCC--ccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEe-----cC------
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYN--VPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLL-----QG------ 228 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~g--IpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~-----~~------ 228 (953)
.++|+|+|. +|..+|+..++++|+.+| ++++|+++.++.+++||..+|++|+++|||+|++..+ ..
T Consensus 129 ~~id~Vi~g-~G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l 207 (554)
T 1w96_A 129 ADVDAVWAG-WGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGL 207 (554)
T ss_dssp TTCSEEECC-SSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCC
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCccccccccccccccccc
Confidence 479999988 688889999999999999 9999999999999999999999999999999998653 00
Q ss_pred -----------CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC
Q 002207 229 -----------SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297 (953)
Q Consensus 229 -----------~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~ 297 (953)
.-...+++.++++ .++||+||||..+++|+||.+|++.+|+.+....+.....+..++||+||+
T Consensus 208 ~~ip~~~~~~~~~~~~~e~~~~~~-----~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~ 282 (554)
T 1w96_A 208 VSVDDDIYQKGCCTSPEDGLQKAK-----RIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG 282 (554)
T ss_dssp EECCHHHHGGGSCSSHHHHHHHHH-----HHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC
T ss_pred cccccccccccCCCCHHHHHHHHH-----HcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC
Confidence 0011122323332 257899999999999999999999999887766655433467899999999
Q ss_pred CCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHH
Q 002207 298 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASL 376 (953)
Q Consensus 298 Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~ 376 (953)
|++|++|.++.++.| ..+.+...... +.++..|+. ...|+. +++++.+++++.+.+
T Consensus 283 g~~e~sv~vl~d~~G---~vv~l~~~~~~--------------~~~~~~k~~------~~~P~~~l~~~~~~~i~~~a~~ 339 (554)
T 1w96_A 283 RARHLEVQLLADQYG---TNISLFGRDCS--------------VQRRHQKII------EEAPVTIAKAETFHEMEKAAVR 339 (554)
T ss_dssp SCEEEEEEEEECTTS---CEEEEEEEEEE--------------EEETTEEEE------EEESCCSSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEcCCC---CEEEEeeeeee--------------eEeecccee------eeCCCcCCCHHHHHHHHHHHHH
Confidence 779999999975432 23322221111 223333332 235776 899999999999999
Q ss_pred HHHHhCCCCeeEeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 377 LFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 377 ~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
++++||++|++++||++ + ++|++||+|||+++|-+ .+.....+|+++.++ +++.+
T Consensus 340 ~~~alg~~G~~~ve~~~-----------------~~~dg~~~~iEiN~R~~g~----~~~~~~~~G~dl~~~---~~~~a 395 (554)
T 1w96_A 340 LGKLVGYVSAGTVEYLY-----------------SHDDGKFYFLELNPRLQVE----HPTTEMVSGVNLPAA---QLQIA 395 (554)
T ss_dssp HHHHHTCCEEEEEEEEE-----------------CTTTCCEEEEEEECSCCTT----THHHHHHHCCCHHHH---HHHHH
T ss_pred HHHHcCCcceEEEEEEE-----------------ECCCCCEEEEEeeCCCCcc----eehhhhhcCCCHHHH---HHHHH
Confidence 99999999999999986 4 67889999999999865 233334789986554 45555
Q ss_pred hhhCC-CC-----------------CC-------------CCCcceecccccccCCCccccccCCCceE
Q 002207 456 CSRFP-NL-----------------AS-------------YNSVSSHLPGRSSGSKPTEALNKREGIRE 493 (953)
Q Consensus 456 ~~r~~-~~-----------------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (953)
+.... .. .+ ....++.+.+|+..+++...|.+..+.+.
T Consensus 396 ~G~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G~i~ 464 (554)
T 1w96_A 396 MGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLH 464 (554)
T ss_dssp TTCCGGGCHHHHHHTTCCTTCCCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSSSEE
T ss_pred cCCCcccccchhhhccCCccccccccccccccccccccccCCCCeEEEEEEEEccCCCCCcccCCeEEe
Confidence 54311 11 01 12245778888888887767766666543
No 53
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.95 E-value=2.9e-27 Score=300.90 Aligned_cols=353 Identities=16% Similarity=0.171 Sum_probs=197.5
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccc--cccccC
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLES--LAQGFG 151 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 151 (953)
|.+.+||+|+.+|.. |..+++++++.|++++.++-+.+........ .|..+.+.+ ......
T Consensus 28 ~~m~kkILI~grGei---------a~~iiraar~lGi~vVaV~s~~d~~a~~~~~--------ADe~~~i~p~~~~~syl 90 (1236)
T 3va7_A 28 KKPFETVLIANRGEI---------AVRIMKTLKRMGIKSVAVYSDPDKYSQHVTD--------ADFSVALHGRTAAETYL 90 (1236)
T ss_dssp CCSCSEEEECCCHHH---------HHHHHHHHHHHTCEEEEEECSGGGGCHHHHH--------SSEEEECCCSSTTTTTT
T ss_pred cCCCCEEEEEcCCHH---------HHHHHHHHHHCCCEEEEEEcCCCcCchhhhh--------CCEEEEeCCCccccccc
Confidence 333458999887732 8999999999999999887655422111000 000000000 000011
Q ss_pred cchhHHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE-EecCC
Q 002207 152 SLSEFAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF-LLQGS 229 (953)
Q Consensus 152 ~~~~~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~-~~~~~ 229 (953)
....+.+. ...++|+|+|.. |...|+..++.+|+.+|+||+|+++.++.++.||..+|++|+++|||+|++. .+.+.
T Consensus 91 d~~~Il~~a~~~~iDaI~pg~-g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~s~ 169 (1236)
T 3va7_A 91 DIDKIINAAKKTGAQAIIPGY-GFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKDA 169 (1236)
T ss_dssp CHHHHHHHHHHTTCSEEECCS-SGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC--------
T ss_pred CHHHHHHHHHHhCCCEEEECC-ccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecCCH
Confidence 11111111 234799999988 7778999999999999999999999999999999999999999999999954 44433
Q ss_pred ccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEE
Q 002207 230 EVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAI 305 (953)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~ 305 (953)
+. +.++. ..++||+||||..+++|+||.+|++.+|+.+....+... ..+..++||+||+|++|++|.
T Consensus 170 ee----a~~~a-----~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~ 240 (1236)
T 3va7_A 170 KE----AKEVA-----KKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQ 240 (1236)
T ss_dssp ------------------------------------------------------------------------CCEEEEEE
T ss_pred HH----HHHHH-----HHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEE
Confidence 22 22222 247899999999999999999999999877655543221 135689999999977999999
Q ss_pred EEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCC
Q 002207 306 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLC 384 (953)
Q Consensus 306 Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~ 384 (953)
++.++.++ .+. .++... .+..+..| ....+|+. +++++.++|++.+.++++++|++
T Consensus 241 vl~Dg~g~---vv~--l~~rd~------------s~qr~~~k------~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~ 297 (1236)
T 3va7_A 241 MMGDGFGK---AIA--IGERDC------------SLQRRNQK------VIEETPAPNLPEATRAKMRAASERLGSLLKYK 297 (1236)
T ss_dssp EEEESSSC---EEE--EEEEEE------------EEEETTEE------EEEEESCSSCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEecCCce---EEE--Eeeeee------------eeeecCcc------eEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 99865432 222 222211 11122222 34457886 99999999999999999999999
Q ss_pred CeeEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCCCCC
Q 002207 385 DFARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLA 463 (953)
Q Consensus 385 G~arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~~~~ 463 (953)
|+++|||++ ++ +|++||+||||+++-+ .|.....+|+++ ++.+++.++.....+.
T Consensus 298 G~~~VEfiv-----------------d~d~g~~y~iEINpRl~g~----~~~te~vtGvDl---v~~~l~~a~G~~l~~~ 353 (1236)
T 3va7_A 298 CAGTVEFIY-----------------DEQRDEFYFLEVNARLQVE----HPITEMVTGLDL---VEWMLRIAANDSPDFD 353 (1236)
T ss_dssp EEEEEEEEE-----------------ETTTTEEEEEEEECSCCTT----HHHHHHHHCCCH---HHHHHHHHTTCCCCGG
T ss_pred ceEEEEEEE-----------------ECCCCcEEEEEEECCCCCc----cHHHHHHHCCCH---HHHHHHHHCCCCCCCc
Confidence 999999987 44 4789999999999743 244445689975 5566777777643322
Q ss_pred --CCCCcceecccccccCCCccccccCCCceEEEEecCC
Q 002207 464 --SYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGG 500 (953)
Q Consensus 464 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~GG 500 (953)
.....++++.+|+.++++...|.++.+.++-....+|
T Consensus 354 ~~~~~~~g~Ai~~riyaedp~~~f~p~~G~i~~~~~p~g 392 (1236)
T 3va7_A 354 NTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSFPSW 392 (1236)
T ss_dssp GCCCCCCSEEEEEEEESEETTTTTEECCEECCEEECCTT
T ss_pred cccccccceEEEEEEecCCcccccCCCCceEEEEEcCCc
Confidence 1223469999999998887777776665544333333
No 54
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.95 E-value=1.4e-26 Score=268.43 Aligned_cols=242 Identities=13% Similarity=0.117 Sum_probs=186.2
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .++..|+.+|+|++|++..++.++.||..+|++|+++|||||++..+.+.+. +.+
T Consensus 66 ~~id~vv~g-----~e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~e----a~~ 136 (431)
T 3mjf_A 66 HDIGLTIVG-----PEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEA----ALA 136 (431)
T ss_dssp TTEEEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHH----HHH
T ss_pred hCcCEEEEC-----CchHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHHH----HHH
Confidence 479999984 2443 4788999999999999999999999999999999999999999998876442 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----CCCCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++. ++||+||||..+++|.||.++++.+|+.+...+++.. ..+..+||||||+| +|+++.++.++.
T Consensus 137 ~~~~-----~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~--- 207 (431)
T 3mjf_A 137 YVRQ-----KGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEASFIVMVDGE--- 207 (431)
T ss_dssp HHHH-----HCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEEEEEEEEESS---
T ss_pred HHHH-----cCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEEEEEEEEcCC---
Confidence 3322 5789999999999999999999999988777665421 12468999999997 999999996431
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHH----HHHHHHHhCC--CCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREG----ASLLFQRLGL--CDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~----a~~~~~aLg~--~G~a 387 (953)
..+.+... . +...+++++.++..++ +...+|++ +++++.+++++. +.++++++|+ +|+.
T Consensus 208 -~~~~~~~~--~----------~~~~~~~~~~g~~~gg-~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~ 273 (431)
T 3mjf_A 208 -NVLPMATS--Q----------DHKRVGDGDTGPNTGG-MGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFL 273 (431)
T ss_dssp -CEEECCCB--E----------ECCEEETTTEEEECSC-SEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred -EEEEEEee--E----------eceecccCCCCCCCCC-ceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 22222221 1 1345778887777665 56678988 999999999886 6788888887 7999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++||++ +++|++||+|+|++||.+.+.. +....|.++.++ ++..+..+
T Consensus 274 ~ve~~~-----------------~~~g~~~viEiN~R~G~~~~~~---i~~~~g~dl~~~---~~~~~~G~ 321 (431)
T 3mjf_A 274 YAGLMI-----------------SADGQPKVIEFNCRFGDPETQP---IMLRMRSDLVEL---CLAGTQGK 321 (431)
T ss_dssp EEEEEE-----------------CTTSCEEEEEECGGGSTTTHHH---HHHHBCSCHHHH---HHHHHTTC
T ss_pred EEEEEE-----------------eCCCCeEEEEEecCCCCcHHHH---HHHHHCCCHHHH---HHHHHcCC
Confidence 999986 6788899999999999655432 224579876544 45555555
No 55
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=2.8e-26 Score=264.92 Aligned_cols=237 Identities=18% Similarity=0.166 Sum_probs=179.2
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 60 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~----~~~ 130 (417)
T 2ip4_A 60 EGIDLTLVG-----PEAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLE----ALA 130 (417)
T ss_dssp HTCCEEEEC-----SSHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHH----HHH
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCHHH----HHH
Confidence 479999996 3555 3567788999999999999999999999999999999999999988865432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccE
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v 318 (953)
+++. .+||+||||..+++|.||.++++.+|+.+....++...++..++||+||+| +|+++.++.+ |. .+
T Consensus 131 ~~~~-----~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g-~E~sv~~~~~--G~---~~ 199 (417)
T 2ip4_A 131 YLEE-----VGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLEG-EEATVLALTD--GE---TI 199 (417)
T ss_dssp HHHH-----HCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCCS-CEEEEEEEES--SS---CE
T ss_pred HHHH-----cCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECccC-cEEEEEEEEe--CC---EE
Confidence 3322 578999999999999999999999998877665542234578999999997 9999999963 22 22
Q ss_pred Ee-cceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHH-HHHHHHHHHHh-----CCCCeeEeee
Q 002207 319 VL-LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI-REGASLLFQRL-----GLCDFARIDG 391 (953)
Q Consensus 319 ~l-~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i-~~~a~~~~~aL-----g~~G~arVDf 391 (953)
.. ...+. ....++++.++..++ +....|+.+++++.+++ ++++.+++++| +++|++++||
T Consensus 200 ~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~ 266 (417)
T 2ip4_A 200 LPLLPSQD------------HKRLLDGDQGPMTGG-MGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGL 266 (417)
T ss_dssp EECCCBEE------------CCEEETTTEEEECSC-SEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred EEcchhee------------chhhccCCCCCcCCC-CeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 21 21110 223555555555444 45668888999999888 77788888776 6789999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
++ +++| +||+|||++||.+.+ ..+..+.|.++.+++..++
T Consensus 267 ~~-----------------~~~g-~~viEiN~R~g~~~~---~~i~~~~g~d~~~~~~~~~ 306 (417)
T 2ip4_A 267 ML-----------------TREG-PKVLEFNARFGDPEA---QALLPLLENDLVELALRVA 306 (417)
T ss_dssp EE-----------------CSSC-EEEEEEESSCCTTHH---HHHTTTBCSCHHHHHHHHH
T ss_pred EE-----------------eCCC-eEEEEEecCCCCcHH---HHHHHHhCCCHHHHHHHHH
Confidence 86 6778 999999999995422 1223357998877765544
No 56
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.95 E-value=4.3e-26 Score=260.86 Aligned_cols=296 Identities=14% Similarity=0.072 Sum_probs=199.5
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
++|||+|+.+|. +|+.+++++++.||+|+.++.+++.... .. .+..+... ......
T Consensus 10 ~~~~ili~g~g~---------~~~~~~~a~~~~G~~v~~~~~~~~~~~~------~~----~d~~~~~~-----~~d~~~ 65 (391)
T 1kjq_A 10 AATRVMLLGSGE---------LGKEVAIECQRLGVEVIAVDRYADAPAM------HV----AHRSHVIN-----MLDGDA 65 (391)
T ss_dssp TCCEEEEESCSH---------HHHHHHHHHHTTTCEEEEEESSTTCGGG------GG----SSEEEECC-----TTCHHH
T ss_pred CCCEEEEECCCH---------HHHHHHHHHHHcCCEEEEEECCCCCchh------hh----ccceEECC-----CCCHHH
Confidence 347999997763 5889999999999999877655432110 00 00000000 000111
Q ss_pred HHHh-hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHH-HHCCCCCCCeEEecCCccch
Q 002207 156 FAEH-LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEM-SKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 156 ~~~~-~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l-~~~Giptp~~~~~~~~~~~~ 233 (953)
+.+. ...++|+|++...-. - -.+...|+.+|+ ++|+++.++.+++||..+|++| +++|||+|++..+.+.+.
T Consensus 66 l~~~~~~~~~d~v~~~~e~~-~--~~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~-- 139 (391)
T 1kjq_A 66 LRRVVELEKPHYIVPEIEAI-A--TDMLIQLEEEGL-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESL-- 139 (391)
T ss_dssp HHHHHHHHCCSEEEECSSCS-C--HHHHHHHHHTTC-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSHHH--
T ss_pred HHHHHHHcCCCEEEECCCcC-C--HHHHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCHHH--
Confidence 1111 124799999976311 1 123456889999 5799999999999999999999 899999999998876432
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC--CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~--~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+.++.++ ++||+||||..+++|.||.++++.+|+.+....++... .+..++||+||+|++|+++.++.+++
T Consensus 140 --~~~~~~~-----~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 140 --FREAVAD-----IGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp --HHHHHHH-----HCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred --HHHHHHh-----cCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 3333322 57899999999999999999999998776665544321 25689999999944999999997532
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+ .....+.+.. ...+++.. ...|+.++++..+++++++.+++++||++|++++||
T Consensus 213 g----~~~~~~~~~~------------~~~~~~~~---------~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~ 267 (391)
T 1kjq_A 213 G----VHFCAPVGHR------------QEDGDYRE---------SWQPQQMSPLALERAQEIARKVVLALGGYGLFGVEL 267 (391)
T ss_dssp E----EEECCCEEEE------------EETTEEEE---------EEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred C----eEEccCcceE------------EECCEEEE---------EEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEE
Confidence 1 2222222111 01223322 235888999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++ +++ ++||+|||++||.+. .++.. ..|+++.++ +++.++..
T Consensus 268 ~~-----------------~~~-~~~viEiN~R~~~~~--~~~~~--~~g~~~~~~---~~~~~~G~ 309 (391)
T 1kjq_A 268 FV-----------------CGD-EVIFSEVSPRPHDTG--MVTLI--SQDLSEFAL---HVRAFLGL 309 (391)
T ss_dssp EE-----------------ETT-EEEEEEEESSCCGGG--GGHHH--HBSSCHHHH---HHHHHTTC
T ss_pred EE-----------------eCC-cEEEEEEECCCCCCc--ceeee--ecCcCHHHH---HHHHHcCC
Confidence 86 455 799999999999543 33333 348876444 45555544
No 57
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.94 E-value=1.2e-26 Score=252.23 Aligned_cols=271 Identities=10% Similarity=0.110 Sum_probs=184.9
Q ss_pred EEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHHh
Q 002207 80 VGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAEH 159 (953)
Q Consensus 80 V~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (953)
|+||..... .+++.++++|++.||+|+.++.+... ..+ .+ .. ..
T Consensus 2 I~il~~~~~-------~~~~~~~~a~~~~G~~v~~~~~~~~~--~~~----------~~----------~~-------~~ 45 (280)
T 1uc8_A 2 LAILYDRIR-------PDERMLFERAEALGLPYKKVYVPALP--MVL----------GE----------RP-------KE 45 (280)
T ss_dssp EEEEESSCC-------HHHHHHHHHHHHHTCCEEEEEGGGCC--EET----------TB----------CC-------GG
T ss_pred EEEEecCCC-------HHHHHHHHHHHHcCCcEEEEehhhce--eec----------cC----------CC-------cc
Confidence 788875433 46999999999999999877654321 000 00 00 00
Q ss_pred hccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhh
Q 002207 160 LAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNW 239 (953)
Q Consensus 160 ~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~ 239 (953)
...+|+++...+|.+ +++.++++|+.+|+|++++ +.++.+++||..++++|+++|||+|++..+.+.+. +.++
T Consensus 46 -~~~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~-~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~----~~~~ 118 (280)
T 1uc8_A 46 -LEGVTVALERCVSQS-RGLAAARYLTALGIPVVNR-PEVIEACGDKWATSVALAKAGLPQPKTALATDREE----ALRL 118 (280)
T ss_dssp -GTTCCEEEECCSSHH-HHHHHHHHHHHTTCCEESC-HHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSHHH----HHHH
T ss_pred -cCCCCEEEECCccch-hhHHHHHHHHHCCCceeCC-HHHHHHhCCHHHHHHHHHHcCcCCCCeEeeCCHHH----HHHH
Confidence 126895555555533 6788999999999999965 99999999999999999999999999998876432 3333
Q ss_pred hhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHh--HhcCCCCcEEEeccCCC-CeEEEEEEEEeCCCCccc
Q 002207 240 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI--ILEGIDDRVVVELFLEG-GSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 240 ~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~--~~~~~~~~vlVEefI~G-g~E~tv~Vl~~~~g~~~~ 316 (953)
++. .+||+||||..+++|.||.++++.+++.+....+ +....+..+|||+||+| +.|+++.+++ + .
T Consensus 119 ~~~-----~~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~----~--~ 187 (280)
T 1uc8_A 119 MEA-----FGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVG----E--R 187 (280)
T ss_dssp HHH-----HCSSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEET----T--E
T ss_pred HHH-----hCCCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEEC----C--E
Confidence 322 5679999999999999999999888766544332 22112578999999996 5899999883 2 1
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.+. . +.. . . .+|..++..++ . ..|+.+++ ++++.+.+++++||+ |++++||++
T Consensus 188 ~~~--~--~~~----------~-~-~~~~~~~~~g~-~--~~p~~l~~----~~~~~~~~~~~~lg~-g~~~vD~~~--- 240 (280)
T 1uc8_A 188 AIA--A--IYR----------R-S-AHWITNTARGG-Q--AENCPLTE----EVARLSVKAAEAVGG-GVVAVDLFE--- 240 (280)
T ss_dssp EEE--E--EEC-----------------------------CEECCCCH----HHHHHHHHHHHHTTC-SEEEEEEEE---
T ss_pred EEE--E--EEE----------e-c-CCccccccCCc-c--ccCCCCCH----HHHHHHHHHHHHhCC-CeEEEEEEE---
Confidence 211 1 110 0 0 12333443333 1 24666765 678999999999999 999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
+++| +||+|||++||++. .+.++|+++.+++-+++
T Consensus 241 --------------~~~g-~~~iEiN~r~g~~~------~~~~~G~~~~~~~~~~~ 275 (280)
T 1uc8_A 241 --------------SERG-LLVNEVNHTMEFKN------SVHTTGVDIPGEILKYA 275 (280)
T ss_dssp --------------ETTE-EEEEEEETTCCCTT------HHHHHCCCHHHHHHHHH
T ss_pred --------------eCCC-eEEEEEeCCCCccc------hheeeccCHHHHHHHHH
Confidence 5566 99999999999874 35678999988765544
No 58
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.94 E-value=9.8e-26 Score=260.25 Aligned_cols=289 Identities=13% Similarity=0.095 Sum_probs=202.7
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
+||+||.||.. |+.++.++++.||+|+.++.+++.. ..... +. .... .+... +..
T Consensus 36 ~~IlIlG~G~l---------g~~~~~aa~~lG~~v~v~d~~~~~p------~~~~a----d~-~~~~----~~~d~-~~l 90 (419)
T 4e4t_A 36 AWLGMVGGGQL---------GRMFCFAAQSMGYRVAVLDPDPASP------AGAVA----DR-HLRA----AYDDE-AAL 90 (419)
T ss_dssp CEEEEECCSHH---------HHHHHHHHHHTTCEEEEECSCTTCH------HHHHS----SE-EECC----CTTCH-HHH
T ss_pred CEEEEECCCHH---------HHHHHHHHHHCCCEEEEECCCCcCc------hhhhC----CE-EEEC----CcCCH-HHH
Confidence 58999998863 8899999999999998764333211 11000 00 0000 00001 111
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..+..++|+|++-+. ..+..+...|+.. .++|+++.++.+++||..+|++|+++|||+|++..+.+.+. +.
T Consensus 91 ~~~a~~~D~V~~~~e---~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e----~~ 161 (419)
T 4e4t_A 91 AELAGLCEAVSTEFE---NVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAA----LA 161 (419)
T ss_dssp HHHHHHCSEEEECCT---TCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSHHH----HH
T ss_pred HHHHhcCCEEEEccC---cCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCHHH----HH
Confidence 222247999996552 2344455666766 48899999999999999999999999999999998876432 22
Q ss_pred hhhhhcCCCC----CCCcEEEeeC-CCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 238 NWFVTNKLDP----NSGKVVVKPT-RAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 238 ~~~~~~~l~~----~~~PvvVKP~-~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
++. +. + ||+||||. .+++|+|+.++++.+|+.+....+ .+..+|||+||+|++|+++.++++.+|
T Consensus 162 ~~~-----~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~----~~~~~lvEe~i~~~~Eisv~v~~~~~G 231 (419)
T 4e4t_A 162 ALD-----DAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL----GGVPCVLEKRLPLKYEVSALIARGADG 231 (419)
T ss_dssp TSC-----HHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT----TTCCEEEEECCCEEEEEEEEEEECTTS
T ss_pred HHH-----Hhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc----CCCcEEEeecCCCCeEEEEEEEEcCCC
Confidence 221 23 6 89999999 778889999999999987665542 357899999999669999999975433
Q ss_pred CccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 313 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 313 ~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
..+.+++.+... .++++ .....|+. +++++.++++++|.+++++||++|+++|||
T Consensus 232 ---~~~~~~~~e~~~----------~~g~~-----------~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~ 287 (419)
T 4e4t_A 232 ---RSAAFPLAQNVH----------HNGIL-----------ALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEF 287 (419)
T ss_dssp ---CEEECCCEEEEE----------ETTEE-----------EEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ---CEEEEeCeEEEe----------eCCeE-----------EEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEE
Confidence 344445443221 11111 12356888 999999999999999999999999999999
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
++ +++|++||+||||+||.+.+ +. ...+|+|.- ...++.++..
T Consensus 288 ~~-----------------~~dG~~~v~EiNpR~~~sg~--~t--~~~~~~s~~---~~~~ra~~G~ 330 (419)
T 4e4t_A 288 FV-----------------LEDGSFVANEMAPRPHNSGH--YT--VDACATSQF---EQQVRAMTRM 330 (419)
T ss_dssp EE-----------------ETTCCEEEEEEESSCCGGGT--TH--HHHBSSCHH---HHHHHHHTTC
T ss_pred EE-----------------eCCCCEEEEEEeCCCCCCCC--eE--eeccCCCHH---HHHHHHHcCC
Confidence 87 57889999999999996543 22 246799853 3444544543
No 59
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.94 E-value=2.5e-25 Score=258.64 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=187.3
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|++..++.+++||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 82 ~~id~vv~g-----~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~e----a~~ 152 (442)
T 3lp8_A 82 EKIELVVIG-----PETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNS----AYK 152 (442)
T ss_dssp TTCCEEEEC-----SHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHH----HHH
T ss_pred hCCCEEEEC-----CcHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHHH----HHH
Confidence 479999983 4555 3677899999999999999999999999999999999999999998876442 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc-CC---CCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GI---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~-~~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++ .++||+||||..+++|.||.++++.+|+.+...+++.. .+ +..+||||||+| +|+++.++.++.
T Consensus 153 ~~~-----~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~--- 223 (442)
T 3lp8_A 153 FID-----KHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG-KEISFFTLVDGS--- 223 (442)
T ss_dssp HHH-----HSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEESS---
T ss_pred HHH-----HcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeecC-cEEEEEEEECCC---
Confidence 332 26789999999999999999999999988777766532 22 268999999997 999999996431
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHHHH----HHHHHHHhCC--CCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIREG----ASLLFQRLGL--CDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~~~----a~~~~~aLg~--~G~a 387 (953)
..+.+.. .. . ...+++++.++..++ +...+|++ +++++.+++++. +.++++++|+ +|+.
T Consensus 224 -~~~~~~~--~~--~--------~~~~~~~~~g~~~gg-~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~ 289 (442)
T 3lp8_A 224 -NPVILGV--AQ--D--------YKTIGDNNKGPNTGG-MGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLL 289 (442)
T ss_dssp -CEEEEEE--EE--E--------CCEEEGGGEEEECSC-SEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred -eEEEeEE--eE--e--------eeecccCCCCCCCCC-cEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 1222221 11 1 345778887776655 56667997 999999999987 9999999998 7999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhCC
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 460 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~~ 460 (953)
++||++ +++| +||+|+|++||.+.+.. +....|.+ +++.++..+..+.+
T Consensus 290 ~ve~~~-----------------~~~g-~~viEiN~R~g~~~~~~---~~~~~~~d---l~~~~~~~~~G~l~ 338 (442)
T 3lp8_A 290 FAGIII-----------------KKNE-PKLLEYNVRFGDPETQS---ILPRLNSD---FLKLLSLTAKGKLG 338 (442)
T ss_dssp EEEEEE-----------------ETTE-EEEEEEESSCCTTHHHH---HGGGBCSC---HHHHHHHHHHTCCS
T ss_pred EEEEEE-----------------eCCC-eEEEEEecCCCCCchhh---hHHHhCCC---HHHHHHHHHcCCCC
Confidence 999987 5677 99999999999654322 22345765 55566666666644
No 60
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.94 E-value=8.4e-26 Score=254.53 Aligned_cols=263 Identities=13% Similarity=0.062 Sum_probs=192.3
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHHH
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFAE 158 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (953)
||+||.||+- |+.++.+.++.||+| ++.|++. +. ..+ .
T Consensus 3 ~igilGgGql---------g~m~~~aa~~lG~~v--~~~~~~a------~~-----------~~~----------~---- 40 (355)
T 3eth_A 3 QVCVLGNGQL---------GRMLRQAGEPLGIAV--WPVGLDA------EP-----------AAV----------P---- 40 (355)
T ss_dssp EEEEESCSHH---------HHHHHHHHGGGTCEE--EEECTTC------CG-----------GGC----------C----
T ss_pred EEEEECCCHH---------HHHHHHHHHHCCCEE--ECCCCCC------Cc-----------eEE----------c----
Confidence 6999999943 899999999999999 4444431 10 000 0
Q ss_pred hhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 159 HLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 159 ~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
+ ++|+|.+-+. ....+ .-..|+..| ++++++.++++++||..+|++|+++|||||++..+.+.+. +.+
T Consensus 41 -l--~~d~it~e~e-~v~~~--~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~~e----~~~ 108 (355)
T 3eth_A 41 -F--QQSVITAEIE-RWPET--ALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSE----WPA 108 (355)
T ss_dssp -C--TTSEEEESCS-CCCCC--HHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCGGG----HHH
T ss_pred -c--cCCEEEECcC-CcCHH--HHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCHHH----HHH
Confidence 1 6899999874 22222 334556666 5799999999999999999999999999999998876543 223
Q ss_pred hhhhcCCCCCCCcEEEeeCCC-CCceeEEEeCC--HHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRA-GSSIGVTVAYG--VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~-gsS~GV~~v~~--~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
+.+ .++||+||||+++ ++|+|++++++ .+|+.+.. ++ ++|||+||++++|++|.++++.+|
T Consensus 109 ~~~-----~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~-------~~-~vivEe~I~~~~Eisv~v~~~~~G--- 172 (355)
T 3eth_A 109 VFD-----RLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC-------YG-ECIVEQGINFSGEVSLVGARGFDG--- 172 (355)
T ss_dssp HHH-----HHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG-------TT-TEEEEECCCCSEEEEEEEEECTTS---
T ss_pred HHH-----HcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh-------hC-CEEEEEccCCCcEEEEEEEEcCCC---
Confidence 332 2678999999996 56799999999 88866421 23 699999999669999999975433
Q ss_pred ccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 002207 316 HPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 395 (953)
Q Consensus 316 ~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~ 395 (953)
...++++.|... .+++++ ....|+.+++++.++++++|.+++++||++|+.+|||++
T Consensus 173 ~~~~~p~~e~~~----------~~g~~~-----------~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~-- 229 (355)
T 3eth_A 173 STVFYPLTHNLH----------QDGILR-----------TSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFV-- 229 (355)
T ss_dssp CEEECCCEEEEE----------ETTEEE-----------EEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEE--
T ss_pred CEEEECCEEEEe----------eCCeEE-----------EEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEE--
Confidence 345556655321 112221 123688899999999999999999999999999999987
Q ss_pred CCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhh
Q 002207 396 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 457 (953)
Q Consensus 396 ~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~ 457 (953)
++ +++||+||||+|+.+.+ +.. ..+|+|. ++..++.++.
T Consensus 230 ---------------~~-~~~~v~EinpR~~~sg~--~t~--~~~~~s~---fe~~~ra~~G 268 (355)
T 3eth_A 230 ---------------TP-QGLLINELAPRVHNSGH--WTQ--NGASISQ---FELHLRAITD 268 (355)
T ss_dssp ---------------ET-TEEEEEEEESSCCGGGT--THH--HHSSSCH---HHHHHHHHTT
T ss_pred ---------------EC-CcEEEEEeeCCCCCCcc--EEe--eeecCCH---HHHHHHHHcC
Confidence 43 57999999999997654 222 3678873 3344444444
No 61
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.94 E-value=1.1e-25 Score=260.55 Aligned_cols=237 Identities=22% Similarity=0.199 Sum_probs=178.0
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 61 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 131 (424)
T 2yw2_A 61 EGVDFTIVG-----PEAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEK----AKE 131 (424)
T ss_dssp HTCSEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHH----HHH
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCHHH----HHH
Confidence 479999995 3555 3567789999999999999999999999999999999999999998866432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C---CCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++. .+||+||||..+++|.||.++++.+|+.+....++... + ...++||+||+| +|+++.++.+ |.
T Consensus 132 ~~~~-----~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~~--G~- 202 (424)
T 2yw2_A 132 YVEK-----VGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEG-EEASYIVMIN--GD- 202 (424)
T ss_dssp HHHH-----HCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEE--TT-
T ss_pred HHHH-----cCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-cEEEEEEEEc--CC-
Confidence 3322 57899999999999999999999999887766554311 1 358999999997 9999999963 22
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HHHHHHHHHh-----CCCCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EGASLLFQRL-----GLCDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL-----g~~G~a 387 (953)
.+...+.... ...+++++.++..++ +...+|+. +++++.++++ +++.+++++| +++|++
T Consensus 203 --~~~~~~~~~~-----------~~~~~~~~~~~~~g~-~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (424)
T 2yw2_A 203 --RYVPLPTSQD-----------HKRLLDEDKGPNTGG-MGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFL 268 (424)
T ss_dssp --EEEECCCBEE-----------CCEEETTTEEEECSC-SEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEE
T ss_pred --EEEeecceee-----------ccccccCCCCCCCCC-CeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 2221111110 234566666665444 55678987 9999999884 7888888776 678999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
++||++ +++| +||+|||++||.+.+. .+..+.|.++.+++..+
T Consensus 269 ~ve~~~-----------------~~~g-~~viEiN~R~g~~~~~---~i~~~~g~d~~~~~~~~ 311 (424)
T 2yw2_A 269 YAGLMI-----------------TKEG-PKVLEFNVRLGDPEAQ---PILMRVKNDFLETLLNF 311 (424)
T ss_dssp EEEEEE-----------------ETTE-EEEEEEESSCCTTTHH---HHHHTBCSCHHHHHHHH
T ss_pred EEEEEE-----------------eCCC-cEEEEEecCCCCcHHH---HHHHHhCCCHHHHHHHH
Confidence 999986 5678 9999999999955322 23346799877665443
No 62
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.94 E-value=1.8e-25 Score=260.84 Aligned_cols=237 Identities=18% Similarity=0.163 Sum_probs=172.1
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 82 ~~~d~vi~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 152 (451)
T 2yrx_A 82 QAIDLTIVG-----PEAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEE----AKA 152 (451)
T ss_dssp TTCSEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHH----HHH
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHH----HHH
Confidence 579999984 3554 3566788999999999999999999999999999999999999988876432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C---CCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++. ++||+||||..+++|.||.++++.+|+.+...+++... + ...+|||+||+| +|++|.++.+ |.
T Consensus 153 ~~~~-----~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~d--G~- 223 (451)
T 2yrx_A 153 YIEQ-----KGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEG-EEFSFMAFVN--GE- 223 (451)
T ss_dssp HHHH-----HCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCS-EEEEEEEEEE--TT-
T ss_pred HHHh-----cCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCcC-cEEEEEEEEc--CC-
Confidence 3322 56899999999999999999999999877666554311 2 368999999997 9999999963 22
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHH-HHHHHHHHHHh-----CCCCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSI-REGASLLFQRL-----GLCDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i-~~~a~~~~~aL-----g~~G~a 387 (953)
.+...+. ... ...+++++.++..++ +...+|+. +++++.+++ ++++.++.++| ++.|+.
T Consensus 224 --~~~~~~~-~~~----------~~~~~~~~~~~~~g~-~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 289 (451)
T 2yrx_A 224 --KVYPLAI-AQD----------HKRAYDGDEGPNTGG-MGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVL 289 (451)
T ss_dssp --EEEECCC-BEE----------CCEEETTTEEEECSC-SEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred --EEEEeee-EEe----------ccccccCCCCCCCCC-CeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 2221111 110 234556655554444 45668987 999998888 77777777765 578999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
++||++ +++| +||+|||++||.+.+ ..+..+.|.++.+++..+
T Consensus 290 ~ve~~~-----------------~~~g-~~viEiN~R~g~~~~---~~i~~~~g~d~~~~~~~~ 332 (451)
T 2yrx_A 290 YAGLMA-----------------TANG-PKVIEFNARFGDPEA---QVVLPRLKTDLVEAVLAV 332 (451)
T ss_dssp EEEEEE-----------------ETTE-EEEEEEESSCCTTHH---HHHGGGBCSCHHHHHHHH
T ss_pred EEEEEE-----------------eCCC-cEEEEEecCCCCcHH---HHHHHHcCCCHHHHHHHH
Confidence 999986 5678 999999999995432 223346799887765543
No 63
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.94 E-value=1e-25 Score=261.57 Aligned_cols=300 Identities=13% Similarity=0.044 Sum_probs=196.4
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhH
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEF 156 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (953)
++||+|+.+|. +|+.+++++++.||+|+.++.+++....... .........+ ...+
T Consensus 19 ~~~ili~g~g~---------~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~a-d~~~~~~~~d--------------~~~l 74 (433)
T 2dwc_A 19 AQKILLLGSGE---------LGKEIAIEAQRLGVEVVAVDRYANAPAMQVA-HRSYVGNMMD--------------KDFL 74 (433)
T ss_dssp CCEEEEESCSH---------HHHHHHHHHHHTTCEEEEEESSTTCHHHHHS-SEEEESCTTC--------------HHHH
T ss_pred CCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEECCCCChhhhhc-ceEEECCCCC--------------HHHH
Confidence 46899997763 5889999999999999887765442110000 0000000000 1111
Q ss_pred HHhh-ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHH-HHCCCCCCCeEEecCCccchh
Q 002207 157 AEHL-AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEM-SKQGFITVPSFLLQGSEVNES 234 (953)
Q Consensus 157 ~~~~-~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l-~~~Giptp~~~~~~~~~~~~~ 234 (953)
.+.. ..++|+|++...... -.+...|+.+|+ ++|+++.++.+++||..+|++| +++|||+|++..+.+.+.
T Consensus 75 ~~~~~~~~~d~V~~~~e~~~---~~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~--- 147 (433)
T 2dwc_A 75 WSVVEREKPDAIIPEIEAIN---LDALFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTLDE--- 147 (433)
T ss_dssp HHHHHHHCCSEEEECSSCSC---HHHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSHHH---
T ss_pred HHHHHHcCCCEEEECcccCC---HHHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCHHH---
Confidence 1111 247999999874111 234466899999 6799999999999999999999 899999999998876432
Q ss_pred hhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC--CCCcEEEeccCCCCeEEEEEEEEeCCC
Q 002207 235 ELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDVGSG 312 (953)
Q Consensus 235 ~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~--~~~~vlVEefI~Gg~E~tv~Vl~~~~g 312 (953)
+.++.+ .++||+||||..+++|.||.++++.+|+.+....++... .+..++||+||++++|+++.++.+..
T Consensus 148 -~~~~~~-----~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~g~E~sv~~~~~~~- 220 (433)
T 2dwc_A 148 -LYEACE-----KIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFD- 220 (433)
T ss_dssp -HHHHHH-----HHCSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEEC-
T ss_pred -HHHHHH-----hcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCCCeeEEEEEEeccc-
Confidence 333332 257899999999999999999999999876665443211 25689999999944999999996420
Q ss_pred Ccccc--EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEee
Q 002207 313 FDCHP--VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARID 390 (953)
Q Consensus 313 ~~~~~--v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVD 390 (953)
.++.+ ....+.+.. ...+++. ....|+.+++++.+++++++.+++++||++|++++|
T Consensus 221 ~~G~~~~~~~~~~~~~------------~~~~~~~---------~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve 279 (433)
T 2dwc_A 221 ENGEIVTTFPKPVGHY------------QIDGDYH---------ASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVE 279 (433)
T ss_dssp TTSCEEEEEECCEEEE------------ESSSSEE---------EEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEE
T ss_pred CCCCEeEEEecccceE------------EEcCEEE---------EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEE
Confidence 01222 111221110 0112222 223588899999999999999999999999999999
Q ss_pred eeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 391 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 391 f~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
|++ +++ ++||+|||++||.+ ..++....+.|+++.++ +++.++..
T Consensus 280 ~~~-----------------~~~-~~~viEiN~R~~~~--~~~~~~~~~~g~~~~~~---~~~~~~G~ 324 (433)
T 2dwc_A 280 MFV-----------------KGD-KVWANEVSPRPHDT--GMVTLASHPPGFSEFAL---HLRAVLGL 324 (433)
T ss_dssp EEE-----------------ETT-EEEEEEEESSCCGG--GGGHHHHSCTTCSHHHH---HHHHHHTC
T ss_pred EEE-----------------eCC-cEEEEEEeCCcCCC--cceehhHhccCCCHHHH---HHHHHcCC
Confidence 987 455 79999999999954 33454444569986544 44455554
No 64
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=260.80 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=173.7
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.+++||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 87 ~~~d~V~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 157 (452)
T 2qk4_A 87 KKIEFVVVG-----PEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEE----ACS 157 (452)
T ss_dssp HTCCEEEEC-----SSHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSHHH----HHH
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHH----HHH
Confidence 479999984 4665 4556778899999999999999999999999999999999999998876432 333
Q ss_pred hhhhcCCCCCCCc-EEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C---CCcEEEeccCCCCeEEEEEEEEeCCCC
Q 002207 239 WFVTNKLDPNSGK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I---DDRVVVELFLEGGSEFTAIVLDVGSGF 313 (953)
Q Consensus 239 ~~~~~~l~~~~~P-vvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~ 313 (953)
+++ .++|| +||||..+++|.||.++++.+|+.+...+++... + +..+|||+||+| +|++|.++.+ |.
T Consensus 158 ~~~-----~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G-~E~sv~~~~d--G~ 229 (452)
T 2qk4_A 158 FIL-----SADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG-EEVSCLCFTD--GK 229 (452)
T ss_dssp HHH-----HCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS-EEEEEEEEEC--SS
T ss_pred HHH-----hCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC-CeEEEEEEEC--CC
Confidence 332 26789 9999999999999999999999887666553211 1 368999999997 9999999962 22
Q ss_pred ccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HHHHHHHHHh-----CCCCe
Q 002207 314 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EGASLLFQRL-----GLCDF 386 (953)
Q Consensus 314 ~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL-----g~~G~ 386 (953)
..+.+...+- ...+++++.++..++ +...+|+. +++++.++++ +++.+++++| +++|+
T Consensus 230 --~~~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~ 294 (452)
T 2qk4_A 230 --TVAPMPPAQD------------HKRLLEGDGGPNTGG-MGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGI 294 (452)
T ss_dssp --CEEECCCBEE------------EEEEETTTEEEEEEE-EEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEE
T ss_pred --EEEEcceeee------------cccccCCCCCCCCCC-ceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeE
Confidence 1222222211 123455555554333 45668988 9999999886 6888888776 45799
Q ss_pred eEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHH
Q 002207 387 ARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 452 (953)
Q Consensus 387 arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li 452 (953)
+++||++ +++| +||+|||++||.+.+. .+..+.|.++.+++..++
T Consensus 295 ~~ve~~~-----------------~~~g-~~viEiN~R~~~~~~~---~i~~~~g~d~~~~~~~~~ 339 (452)
T 2qk4_A 295 LYAGIML-----------------TKNG-PKVLEFNCRFGDPECQ---VILPLLKSDLYEVIQSTL 339 (452)
T ss_dssp EEEEEEE-----------------ETTE-EEEEEEESSCCTTTHH---HHGGGBCSCHHHHHHHHH
T ss_pred EEEEEEE-----------------eCCC-cEEEEEeccCCCcHHH---HHHHHhCCCHHHHHHHHH
Confidence 9999986 5678 9999999999954321 133457998877765544
No 65
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.93 E-value=1.1e-25 Score=255.37 Aligned_cols=279 Identities=16% Similarity=0.118 Sum_probs=164.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
+||+|+.|| .+|+.+++++++.||+|+.++.+++.... .. .+. ....+ .+..+
T Consensus 2 ~~Ililg~g---------~~~~~~~~a~~~~G~~v~~~~~~~~~~~~------~~----~~~-~~~~~------~l~~~- 54 (365)
T 2z04_A 2 LTVGILGGG---------QLGWMTILEGRKLGFKFHVLEDKENAPAC------RV----ADR-CFRTG------QISEF- 54 (365)
T ss_dssp CEEEEECCS---------HHHHHHHHHHGGGTCEEEEECSSSSCHHH------HH----SSE-EECGG------GHHHH-
T ss_pred CEEEEECCC---------HHHHHHHHHHHHCCCEEEEEeCCCCCchh------hh----ccc-eeeHH------HHHHH-
Confidence 589999888 45999999999999999877543331100 00 000 00000 11111
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
..++|+|++.. |+..+ ++++.+.. ++|+++.++.+++||..+|++|+++|||+|++..+. .+. +.
T Consensus 55 ---~~~~d~v~~~~-----e~~~~-~~~~~l~~-~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~-~~~----~~ 119 (365)
T 2z04_A 55 ---VDSCDIITYEF-----EHIKD-EVLEKCES-KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIK-RDE----II 119 (365)
T ss_dssp ---HHHCSEEEESS-----SCCCH-HHHHHHTT-TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC-----------
T ss_pred ---hhcCCEEEECC-----CCCcH-HHHHHHhh-hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEEc-HHH----HH
Confidence 14799999976 34433 24444433 789999999999999999999999999999999876 432 22
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCC-CceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCH 316 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~ 316 (953)
+++ +.++||+||||..++ +|.||.++++.+|+.+...+++ .+..++||+||++|+|+++.++.+++ +.
T Consensus 120 ~~~-----~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~---~~~~~lvEe~i~~g~e~sv~~~~d~~---G~ 188 (365)
T 2z04_A 120 DAL-----KSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHD---KEESFIIEEFVKFEAEISCIGVRDRE---GK 188 (365)
T ss_dssp -------------CEEEECC---------------------------------CEEEECCCCSEEEEEEEEECTT---CC
T ss_pred HHH-----HhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhc---cCCCEEEEccCCCCEEEEEEEEECCC---CC
Confidence 222 236789999999999 9999999999998776655443 24689999999933999999997533 33
Q ss_pred cEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCC
Q 002207 317 PVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 396 (953)
Q Consensus 317 ~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~ 396 (953)
.+.++..+... ...+++ ....|+++ .+++++++.+++++||++|++++||++
T Consensus 189 ~~~~~~~~~~~----------~~~~~~-----------~~~~p~~~----~~~~~~~~~~~~~~lg~~G~~~vd~~~--- 240 (365)
T 2z04_A 189 TYFYPQPFNKH----------EEGILI-----------YNYVPYAK----LKEAEEITKRLMELLDIVGVFTVEFFL--- 240 (365)
T ss_dssp EEECCEEEEEE----------ETTEEE-----------EEEEEEEC----CHHHHHHHHHHHHHTTCCEEEEEEEEE---
T ss_pred EEEECCEEEEE----------eCCEeE-----------EEECCHhH----HHHHHHHHHHHHHHcCCEEEEEEEEEE---
Confidence 44444443321 111222 13456655 566799999999999999999999986
Q ss_pred CCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 397 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++|++||+|||++||.+.+. +. .+.|.+. +..+++.++..
T Consensus 241 --------------~~~g~~~~iEiN~R~~~~~~~--~~--~~~~~~~---~~~~~~~~~g~ 281 (365)
T 2z04_A 241 --------------LKDGRVLINEFAPRVHNTGHW--TL--DGAYTSQ---FENLLRAITEM 281 (365)
T ss_dssp --------------CTTSCEEEEEEESSCCGGGTT--HH--HHBSSCH---HHHHHHHHTTC
T ss_pred --------------eCCCcEEEEEeccCcCCCceE--Ee--eccccCH---HHHHHHHHhCC
Confidence 568899999999999987554 32 3567763 44455555543
No 66
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.93 E-value=4.9e-25 Score=254.89 Aligned_cols=237 Identities=16% Similarity=0.128 Sum_probs=175.5
Q ss_pred cCcCEEEEcCCCCCCCch---HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDG---GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg---~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
.++|+|++. .|+. .+...|+.+|+|++|+++.++.++.||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 61 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----~~~ 131 (422)
T 2xcl_A 61 NQVGLTIVG-----PEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDE----AKA 131 (422)
T ss_dssp TTEEEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHH----HHH
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCHHH----HHH
Confidence 479999984 3555 3556788999999999999999999999999999999999999998876432 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C---CCcEEEeccCCCCeEEEEEEEEeCCCCc
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I---DDRVVVELFLEGGSEFTAIVLDVGSGFD 314 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~---~~~vlVEefI~Gg~E~tv~Vl~~~~g~~ 314 (953)
+++. .+||+||||..+++|.||.++++.+|+.+...+++... + ...+|||+||+| +|+++.++.+ |.
T Consensus 132 ~~~~-----~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~g-~E~sv~~~~d--G~- 202 (422)
T 2xcl_A 132 YVQE-----KGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSG-EEFSLMAFVK--GE- 202 (422)
T ss_dssp HHHH-----HCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS-EEEEEEEEEE--TT-
T ss_pred HHHh-----cCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCcC-cEEEEEEEEc--CC-
Confidence 3322 56899999999999999999999999887666554311 1 368999999997 9999999963 22
Q ss_pred cccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCC-CCHHHHHHHH-HHHHHHHHHh-----CCCCee
Q 002207 315 CHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR-EGASLLFQRL-----GLCDFA 387 (953)
Q Consensus 315 ~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL-----g~~G~a 387 (953)
.+........ ...+++++.++..++ +...+|+. +++++.++++ +++.+++++| +++|+.
T Consensus 203 --~~~~~~~~~~-----------~~~~~~~~~~~~~g~-~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (422)
T 2xcl_A 203 --KVYPMVIAQD-----------HKRAFDGDKGPNTGG-MGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVL 268 (422)
T ss_dssp --EEEECCCBEE-----------EEEEEGGGEEEEEEE-EEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred --EEEecceeee-----------eehhcCCCCCCCCCC-CeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1211111010 123555555554333 45668987 9999988885 4788887776 678999
Q ss_pred EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 388 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 388 rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
++||++ +++| +||+|||++||.+.+. .+..+.|.++.+++..+
T Consensus 269 ~vd~~~-----------------~~~g-~~viEiN~R~g~~~~~---~i~~~~g~d~~~~~~~~ 311 (422)
T 2xcl_A 269 YAGLML-----------------TENG-SKVIEFNARFGDPETQ---VVLPRMESDLVQVLLDL 311 (422)
T ss_dssp EEEEEE-----------------ETTE-EEEEEEESSCCTTTHH---HHGGGBCSCHHHHHHHH
T ss_pred EeeEEE-----------------eCCC-cEEEEEecCCCCcHHH---HHHHhcCCCHHHHHHHH
Confidence 999986 5678 9999999999965432 13346899887766544
No 67
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.93 E-value=5.9e-25 Score=280.00 Aligned_cols=331 Identities=15% Similarity=0.134 Sum_probs=184.7
Q ss_pred HHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCcccccccc---------ccccCcchhHHHh-hccCcCEE
Q 002207 98 ARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESL---------AQGFGSLSEFAEH-LAANVDIV 167 (953)
Q Consensus 98 a~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~D~v 167 (953)
|..+++++++.|++++.++-+.+........ .|..+.+... ...+.....+.+. ...++|+|
T Consensus 26 a~riiraa~elGi~vvav~s~~d~~a~~~~~--------ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~iD~V 97 (1165)
T 2qf7_A 26 AIRVFRAANELGIKTVAIWAEEDKLALHRFK--------ADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAI 97 (1165)
T ss_dssp HHHHHHHHHHTTCEEEEEECGGGTTCHHHHS--------SSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHcCCEEEEEECCCcccchhHHh--------CCEEEEcCCcccccccCCccccccCHHHHHHHHHHhCCCEE
Confidence 7889999999999999888655422110000 0000000000 0000001111111 13479999
Q ss_pred EEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccchhhhhhhhhhcCC
Q 002207 168 FPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKL 245 (953)
Q Consensus 168 f~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~~~~~~~~~~~~~l 245 (953)
+|.. |...|+..++..|+.+|+||+|+++.++.++.||..+|++|+++|||+|++. .+.+.+. +.++.
T Consensus 98 ~pg~-g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~ee----a~~~a----- 167 (1165)
T 2qf7_A 98 HPGY-GLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAE----VAKMA----- 167 (1165)
T ss_dssp ECCS-STTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC--------------------------
T ss_pred EECC-CchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHH----HHHHH-----
Confidence 9984 6778999999999999999999999999999999999999999999999987 4544332 22222
Q ss_pred CCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc---C-CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEec
Q 002207 246 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLL 321 (953)
Q Consensus 246 ~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~---~-~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~ 321 (953)
..++||+||||..+++|+||.+|++.+|+.+....+... . .+..++||+||+|++|++|.++.++.| ..+.+.
T Consensus 168 ~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D~~G---~vv~l~ 244 (1165)
T 2qf7_A 168 AAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHG---NVVHLF 244 (1165)
T ss_dssp ----------------------------------------------------CCCSSEEEEEEEEEECTTS---CEEEEE
T ss_pred HhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEcCCC---cEEEEE
Confidence 247899999999999999999999999877655443321 1 246799999999669999999975433 222221
Q ss_pred ceEEEEeccCccccccCCcccccccCccCCCceEEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcc
Q 002207 322 PTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHV 400 (953)
Q Consensus 322 ~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~ 400 (953)
..... +..+ ........|+ .+++++.++|++.+.++++++|++|++++||++
T Consensus 245 ~r~~s--------------~~r~------~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~v------- 297 (1165)
T 2qf7_A 245 ERDCS--------------VQRR------NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLM------- 297 (1165)
T ss_dssp EEEEE--------------EEET------TEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE-------
T ss_pred eeccc--------------ceec------ccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEE-------
Confidence 11000 1111 1124456787 599999999999999999999999999999986
Q ss_pred ccccccccCcc-cCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhhC-CCCC--C-----CCCccee
Q 002207 401 FSSSETKYGST-EWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF-PNLA--S-----YNSVSSH 471 (953)
Q Consensus 401 ~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r~-~~~~--~-----~~~~~~~ 471 (953)
+ ++|++||+||||++|.+. +.....+|+++.+ .+++.++... +... . ....+++
T Consensus 298 ----------d~~dg~~~~iEiNpR~~~~~----~vte~~tGiDl~~---~~i~~a~G~~l~~~~~g~p~q~~~~~~g~A 360 (1165)
T 2qf7_A 298 ----------DADTGKFYFIEVNPRIQVEH----TVTEVVTGIDIVK---AQIHILDGAAIGTPQSGVPNQEDIRLNGHA 360 (1165)
T ss_dssp ----------ETTTTEEEEEEEECSCCTTH----HHHHHHHCCCHHH---HHHHHHTTCCTTSGGGTCCCGGGCCCCSEE
T ss_pred ----------ECCCCCEEEEEEEcCCCCCc----hhhhhhhCCCHHH---HHHHHHcCCCccccccccccccccccCcEE
Confidence 5 678999999999999542 3334568997655 4666666642 2110 1 1234689
Q ss_pred cccccccCCCccccccCCCceE
Q 002207 472 LPGRSSGSKPTEALNKREGIRE 493 (953)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~ 493 (953)
+++|+.+++|...|.+..++++
T Consensus 361 i~~ri~ae~P~~~f~p~~G~I~ 382 (1165)
T 2qf7_A 361 LQCRVTTEDPEHNFIPDYGRIT 382 (1165)
T ss_dssp EEEEEESEETTTTTEECCEECC
T ss_pred EEEEEEecCCccCcCCCCcEEE
Confidence 9999999888767777666554
No 68
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.93 E-value=2.2e-24 Score=256.41 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=177.0
Q ss_pred HHHHHh-hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--E--
Q 002207 626 EWIKLA-KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--R-- 700 (953)
Q Consensus 626 ~~~~~~-~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v-- 700 (953)
..++.+ +..+|+|+|. ||..+|++.++.+|+.+|+||+|+++.++.+++||..+|++ |+++|||||++.. +
T Consensus 130 ~Il~~a~~~~vdaV~pG-~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~l---l~~aGVPvpp~~~~~l~~ 205 (587)
T 3jrx_A 130 LIVDIAKRIPVQAVWAG-WGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVV---AQTLQVPTLPWSGSGLTV 205 (587)
T ss_dssp HHHHHHHHTTCSEEECC-SSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHH---HHHTTCCBCCBTTTTCCC
T ss_pred HHHHHHHHhCCCEEEeC-CCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHH---HHHcCCCCCCeecccccc
Confidence 344443 3568898888 89999999999999999999999999999999999999999 9999999999864 1
Q ss_pred eCc-c-----------------ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhC
Q 002207 701 RKE-D-----------------LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRI 762 (953)
Q Consensus 701 ~~~-~-----------------~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~ 762 (953)
... + ....+ .+.+.++.+++ +||+||||+.+++|+||.+|++.+||.. +++.+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~v~s-~eea~~~a~~i-GyPvVVKp~~GgGGkGv~iV~s~eEL~~---a~~~a~~~~ 280 (587)
T 3jrx_A 206 EWTEDDLQQGKRISVPEDVYDKGCVKD-VDEGLEAAERI-GFPLMIKASEGGGGKGIRKAESAEDFPI---LFRQVQSEI 280 (587)
T ss_dssp CC------CCCCCCCCHHHHHTTSCCS-HHHHHHHHHHH-CSSEEEEETTCCSSSSEEEECSTTTHHH---HHHHHHHHS
T ss_pred cccccccccccccccchhhccccccCC-HHHHHHHHHhc-CCeEEEEeCCCCCCCCeEEeCCHHHHHH---HHHHHHhhc
Confidence 000 0 00001 22344556788 6999999999999999999999999986 455554431
Q ss_pred CCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEe
Q 002207 763 PPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVK 841 (953)
Q Consensus 763 ~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~ 841 (953)
.+..++||+||+|. +|++|.++++. |..+.+.+...
T Consensus 281 -----------------~~~~vlVEeyI~g~------------------------rei~V~vl~D~~G~vv~l~~rd~-- 317 (587)
T 3jrx_A 281 -----------------PGSPIFLMKLAQHA------------------------RHLEVQILADQYGNAVSLFGRDC-- 317 (587)
T ss_dssp -----------------TTCCEEEEECCCSC------------------------EEEEEEEEECSSSCEEEEEEEEE--
T ss_pred -----------------cCCCEEEEEecCCC------------------------cEEEEEEEEcCCCCEEEEeeeec--
Confidence 14689999999994 49999999986 44433322111
Q ss_pred cCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 842 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 842 ~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.++.+..|+ ....|++. +++++.+++.+.+.+++++||+.|+++|||+++. +|++||+||||+|+.+
T Consensus 318 ---siqrr~qk~-----ie~aPa~~--l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~-dG~~yflEINpRl~~e 384 (587)
T 3jrx_A 318 ---SIQRRHQKI-----VEEAPATI--APLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVE 384 (587)
T ss_dssp ---EEESSSCEE-----EEEESCCS--SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECS-SSCEEEEEEESSCCTT
T ss_pred ---cccccccce-----eEecCCCC--CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CCCEEEEEEeCCCCCc
Confidence 122223333 22457663 5899999999999999999999999999999985 6899999999999864
No 69
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.93 E-value=8.7e-25 Score=247.74 Aligned_cols=269 Identities=19% Similarity=0.121 Sum_probs=182.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
+||+||.||. +|..++.++++.||+|+.++-+++.. ... .+|- ++..... ...+..
T Consensus 2 K~I~ilGgg~---------~g~~~~~~Ak~~G~~vv~vd~~~~~~------~~~----~aD~-~~~~~~~----~d~~~~ 57 (363)
T 4ffl_A 2 KTICLVGGKL---------QGFEAAYLSKKAGMKVVLVDKNPQAL------IRN----YADE-FYCFDVI----KEPEKL 57 (363)
T ss_dssp CEEEEECCSH---------HHHHHHHHHHHTTCEEEEEESCTTCT------TTT----TSSE-EEECCTT----TCHHHH
T ss_pred CEEEEECCCH---------HHHHHHHHHHHCCCEEEEEeCCCCCh------hHh----hCCE-EEECCCC----cCHHHH
Confidence 5899998884 47888899999999999876544321 100 0110 0000000 001111
Q ss_pred HhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELS 237 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~ 237 (953)
....+++|+|+|..+.. .+....+.+++..++| +|+++.++.+++||..+|++|+++|+|+|++.
T Consensus 58 ~~~~~~~D~v~~~~~~~-~~~~~~~~~~~~~~~~-~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~------------- 122 (363)
T 4ffl_A 58 LELSKRVDAVLPVNENL-ACIEFLNSIKEKFSCP-VLFDFEAYRISRDKKKSKDYFKSIGVPTPQDR------------- 122 (363)
T ss_dssp HHHHTSSSEEEECCCCH-HHHHHHHHHGGGCSSC-BCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBS-------------
T ss_pred HHHhcCCCEEEECCCCh-hHHHHHHHHHHHCCCc-cCCCHHHHHHhhCHHHHHHHHHhcCCCCCCce-------------
Confidence 22345899999987532 2345677889999997 58999999999999999999999999998752
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcccc
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHP 317 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~ 317 (953)
.++||+||||+.+++|.|+.++++.+++. .....+++|+||+| +|+++.++.++.+ .
T Consensus 123 ---------~ig~P~vvKp~~g~g~~gv~~v~~~~~~~---------~~~~~~~~ee~i~g-~e~sv~~~~d~~~----~ 179 (363)
T 4ffl_A 123 ---------PSKPPYFVKPPCESSSVGARIIYDDKDLE---------GLEPDTLVEEYVEG-EVVSLEVVGDGSH----F 179 (363)
T ss_dssp ---------CSSSCEEEECSSCCTTTTCEEEC---------------CCCTTCEEEECCCS-EEEEEEEEEESSC----E
T ss_pred ---------ecCCCEEEEECCCCCCcCeEEeccHHHhh---------hhccchhhhhhccC-cEEEEEEEEECCe----E
Confidence 26789999999999999999999988743 24678999999998 9999999975432 2
Q ss_pred EEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCC
Q 002207 318 VVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 397 (953)
Q Consensus 318 v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~ 397 (953)
++....+ ... . . .. ......|+...+ +++++|.+++++||++|+.+|||++
T Consensus 180 ~~~~~~~-~~~------------~----~---~~-~~~~~~p~~~~~----~~~~~a~~~~~~l~~~G~~~vef~~---- 230 (363)
T 4ffl_A 180 AVVKETL-VHI------------D----E---TY-DCHMVTPLPANP----LFRQISHDLAANLPLKGIMDVEAIF---- 230 (363)
T ss_dssp EECCCEE-EEE------------C----T---TS-CEEEEEECCCCH----HHHHHHHHHHHTTTCEEEEEEEEEE----
T ss_pred EEEEEEE-ecc------------C----C---cc-cceeecchhHHH----HHHHHHHHHHHhCCccceeeeeeEE----
Confidence 2222221 110 0 0 01 134456666654 4678999999999999999999986
Q ss_pred CccccccccccCcccCCcEEEEeecCC-CCCCCcchHHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 398 THVFSSSETKYGSTEWGTILFTDINLI-SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 398 ~~~~~~~~~~~~~~~dG~~~~lEIN~~-PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
+++ .+||+||||+ ||.+++ .....+|+|+.++ +++.++..
T Consensus 231 -------------~~~-~~~viEiN~R~~g~~~~----~~~~~~g~dl~~~---~~~~~~g~ 271 (363)
T 4ffl_A 231 -------------GPK-GLRVIEIDARFPSQTPT----VVYYSSGINLIEL---LFRAFTDG 271 (363)
T ss_dssp -------------ETT-EEEEEEEECSCCSSHHH----HHHHHHCCCHHHH---HHHHTTTC
T ss_pred -------------eCC-eEEEEEEeCCCCCChHH----HHHHHHCcCHHHH---HHHHHCCC
Confidence 444 5999999997 565432 2334689986544 45554544
No 70
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.93 E-value=2.1e-24 Score=255.66 Aligned_cols=232 Identities=19% Similarity=0.231 Sum_probs=169.5
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEE--E-
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--R- 700 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~--v- 700 (953)
+..++.++ ..+|+|+|. ||..+|++.++++|+.+|+||+|+++.++++++||..+|++ |+++|||+|++.. +
T Consensus 113 ~~ii~~a~~~~~daI~pg-~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~l---l~~~GVPvp~~~~~~l~ 188 (540)
T 3glk_A 113 ELIVDIAKRIPVQAVWAG-WGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVV---AQTLQVPTLPWSGSGLT 188 (540)
T ss_dssp HHHHHHHHHTTCSEEECC-SSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHH---HHHTTCCBCCBTTTTCC
T ss_pred HHHHHHHHHhCCCEEEeC-CCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHH---HHHcCCCCCCccccccc
Confidence 34444433 567999887 89999999999999999999999999999999999999999 9999999999864 1
Q ss_pred -eCccc------------------cCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhh
Q 002207 701 -RKEDL------------------LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLR 761 (953)
Q Consensus 701 -~~~~~------------------~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~ 761 (953)
..... ...+ .+.+.++.+++ +||+||||+.+++|+||.+|++.+||.. +++.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~s-~~ea~~~a~~i-gyPvVVKp~~ggGG~Gv~iv~~~~eL~~---a~~~~~~~ 263 (540)
T 3glk_A 189 VEWTEDDLQQGKRISVPEDVYDKGCVKD-VDEGLEAAERI-GFPLMIKASEGGGGKGIRKAESAEDFPI---LFRQVQSE 263 (540)
T ss_dssp CCCCCTTC----CCCCCHHHHHHTSCCS-HHHHHHHHHHH-CSSEEEEETTCC----EEEECSTTTHHH---HHHHHHHH
T ss_pred ccccccccccccccccccccccccCcCC-HHHHHHHHHhc-CCcEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHhh
Confidence 00000 0001 22344556778 6999999999999999999999999986 45555443
Q ss_pred CCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEE
Q 002207 762 IPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTV 840 (953)
Q Consensus 762 ~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i 840 (953)
. .+..++||+||+|. +|++|.++++. |..+.+.+...
T Consensus 264 ~-----------------~~~~vlVEe~I~g~------------------------rei~V~vl~d~~G~vv~l~~rd~- 301 (540)
T 3glk_A 264 I-----------------PGSPIFLMKLAQHA------------------------RHLEVQILADQYGNAVSLFGRDC- 301 (540)
T ss_dssp S-----------------TTCCEEEEECCSSE------------------------EEEEEEEEECTTSCEEEEEEEEE-
T ss_pred c-----------------cCCCEEEEEecCCC------------------------cEEEEEEEEcCCCCEEEEeceee-
Confidence 1 14689999999994 49999999986 44433322111
Q ss_pred ecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 841 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 841 ~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.++.+..|+ ....|++. +++++.+++.+.+.+++++||++|+++|||+++. +|++||+||||+|+.+
T Consensus 302 ----s~qr~~~k~-----ie~~Pa~~--l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~-dg~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 302 ----SIQRRHQKI-----VEEAPATI--APLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DGSFHFLELNPRLQVE 368 (540)
T ss_dssp ----EEC---CCS-----EEEESCTT--SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSCEEEEEEECSCCTT
T ss_pred ----eeeecccce-----EEecCCCC--CCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CCCEEEEEEECCCCCc
Confidence 122222333 23457663 5899999999999999999999999999999985 6899999999999864
No 71
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.93 E-value=8.3e-25 Score=244.41 Aligned_cols=222 Identities=18% Similarity=0.149 Sum_probs=142.2
Q ss_pred cCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhh
Q 002207 162 ANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFV 241 (953)
Q Consensus 162 ~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~ 241 (953)
.++|+|++..++.......+++.|+..|+|++|+++.++.+++||+.++++|+++|||+|+++... +++.+++.
T Consensus 71 ~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~------~~~~~~~~ 144 (331)
T 2pn1_A 71 EGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATM------ASFEEALA 144 (331)
T ss_dssp HTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEESSH------HHHHHHHH
T ss_pred cCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEecH------HHhhhhhh
Confidence 479999998754333344567888989999999999999999999999999999999999986421 12222221
Q ss_pred hcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEe-CCCCccccEEe
Q 002207 242 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV-GSGFDCHPVVL 320 (953)
Q Consensus 242 ~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~-~~g~~~~~v~l 320 (953)
. ...+||+||||..+++|.||.++++.+|+.+... ....++||+||+| +|+++.++.+ .+ +..+.+
T Consensus 145 ~---~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~------~~~~~lvee~i~G-~e~~v~~~~d~~~---G~~~~~ 211 (331)
T 2pn1_A 145 A---GEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFS------KNTDLIVQELLVG-QELGVDAYVDLIS---GKVTSI 211 (331)
T ss_dssp T---TSSCSCEEEEESBC-----------------------------CEEEEECCCS-EEEEEEEEECTTT---CCEEEE
T ss_pred c---ccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHH------hCCCeEEEecCCC-cEEEEEEEEecCC---CeEEEE
Confidence 0 2367899999999999999999999988765432 2468999999998 9999999964 22 233332
Q ss_pred cceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcc
Q 002207 321 LPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHV 400 (953)
Q Consensus 321 ~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~ 400 (953)
.+.+.. .+ ..+ ......| .. .+++++.+.+++++||++|++++||++
T Consensus 212 ~~~~~~----------------~~----~~g-~~~~~~~-~~----~~~~~~~~~~~~~~lg~~G~~~vd~~~------- 258 (331)
T 2pn1_A 212 FIKEKL----------------TM----RAG-ETDKSRS-VL----RDDVFELVEHVLDGSGLVGPLDFDLFD------- 258 (331)
T ss_dssp EEEEEE----------------EE----ETT-EEEEEEE-EC----CHHHHHHHHHHHTTTCCCEEEEEEEEE-------
T ss_pred EEEEEE----------------Ee----cCC-ceeEeEE-ec----cHHHHHHHHHHHHHhCCcceEEEEEEE-------
Confidence 322110 00 111 1222222 12 256788999999999999999999973
Q ss_pred ccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 401 FSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 401 ~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
.+|++||+|||+++|-. ++ ...++|+++.+++-++
T Consensus 259 -----------~~g~~~~iEiN~R~~g~----~~-~~~~~G~~~~~~~~~~ 293 (331)
T 2pn1_A 259 -----------VAGTLYLSEINPRFGGG----YP-HAYECGVNFPAQLYRN 293 (331)
T ss_dssp -----------ETTEEEEEEEESSCCTT----HH-HHHHTTCCHHHHHHHH
T ss_pred -----------cCCCEEEEEEeCCCCCc----hH-HHHHcCCCHHHHHHHH
Confidence 46789999999986521 23 3568899987766444
No 72
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.92 E-value=1e-24 Score=241.44 Aligned_cols=202 Identities=20% Similarity=0.210 Sum_probs=159.7
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCcc--EECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVP--FVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIp--yvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
..++|++|+. ..+||+.+|++++.++.+ |+|+++.++++|+||..++++|++ |||+|+++.
T Consensus 67 ~~~~D~~~~i---~~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~------------- 129 (305)
T 3df7_A 67 LEKSDAFLII---APEDDFLLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL------------- 129 (305)
T ss_dssp HTTCSEEEEE---CCCGGGHHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES-------------
T ss_pred HHhcCEEEEE---ccCCcHHHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec-------------
Confidence 4589999999 668999999888877665 999999999999999999999999 999999863
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccE
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 318 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v 318 (953)
...+||+||||.++++|.||.++++ .+..+|||+||+| +|++|.+++ +.. .
T Consensus 130 -------~~~~~P~vvKP~~g~gs~Gv~~v~~---------------~~~~~lvEe~I~G-~e~sv~v~~---g~~--~- 180 (305)
T 3df7_A 130 -------RPLDCKFIIKPRTACAGEGIGFSDE---------------VPDGHIAQEFIEG-INLSVSLAV---GED--V- 180 (305)
T ss_dssp -------SCCSSSEEEEESSCC----CBCCSS---------------CCTTEEEEECCCS-EEEEEEEEE---SSS--E-
T ss_pred -------ccCCCCEEEEeCCCCCCCCEEEEec---------------CCCCEEEEeccCC-cEEEEEEEe---CCe--E-
Confidence 0257899999999999999999998 3568999999997 999999996 111 1
Q ss_pred EecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh-CCCCeeEeeeeecCCC
Q 002207 319 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL-GLCDFARIDGWFLPSS 397 (953)
Q Consensus 319 ~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL-g~~G~arVDf~~~~~~ 397 (953)
.+..+.. .+.++ .+|. ....|+.++++..++++++|.+++++| |++|+++|||++
T Consensus 181 -~~~~~~~-------------~~~~~-~~~~-----g~~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~---- 236 (305)
T 3df7_A 181 -KCLSVNE-------------QIINN-FRYA-----GAVVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVY---- 236 (305)
T ss_dssp -EEEEEEE-------------EEEET-TEEE-----EEEESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEE----
T ss_pred -EEEEEee-------------EeccC-ceec-----cccccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEE----
Confidence 1112111 01111 1232 235788999999999999999999999 999999999985
Q ss_pred CccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHH
Q 002207 398 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 451 (953)
Q Consensus 398 ~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~l 451 (953)
+ |++||+|||++||++..++ .+++|+++.+++.++
T Consensus 237 -------------~--~~~~viEiNpR~~~~~~~~----~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 237 -------------S--DQPYVIEINARLTTPVVAF----SRAYGASVADLLAGG 271 (305)
T ss_dssp -------------S--SSEEEEEEESSCCGGGGGH----HHHHSCCHHHHHTTC
T ss_pred -------------C--CCEEEEEEcCCCCCCHHHH----HHHHCCCHHHHHHhc
Confidence 3 6799999999999875443 578899998887666
No 73
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.92 E-value=3e-23 Score=238.48 Aligned_cols=209 Identities=16% Similarity=0.155 Sum_probs=160.3
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
..|++.+-.- .. +-.+-..|+. |+| +|+++.++.+|+||..+|++ |+++|||||++..+...+ .+.
T Consensus 86 ~~d~i~~e~e-~~--~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~------~~~ 151 (403)
T 3k5i_A 86 TCDVVTAEIE-HV--DTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEH---LRKYGIPMAEHRELVENT------PAE 151 (403)
T ss_dssp TCSEEEESSS-CS--CHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHH---HHTTTCCBCCEEEESSCC------HHH
T ss_pred hCCEEEECCC-CC--CHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHH---HHHCCcCCCCEEEEcCCC------HHH
Confidence 4677655321 11 2234466777 999 89999999999999999999 899999999999887322 122
Q ss_pred HHHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 714 WHELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
+.++.+++ +||+||||+.++ +|.||.++++.+|+.. +++... +..+|||+||++
T Consensus 152 ~~~~~~~~-g~P~VvKp~~gg~~g~Gv~~v~~~~el~~---a~~~~~---------------------~~~~lvEe~i~~ 206 (403)
T 3k5i_A 152 LAKVGEQL-GYPLMLKSKTMAYDGRGNFRVNSQDDIPE---ALEALK---------------------DRPLYAEKWAYF 206 (403)
T ss_dssp HHHHHHHH-CSSEEEEESSSCCTTTTEEEECSTTSHHH---HHHHTT---------------------TSCEEEEECCCE
T ss_pred HHHHHHHh-CCCEEEEeCCCCcCCCCEEEECCHHHHHH---HHHhcC---------------------CCcEEEecCCCC
Confidence 44556778 699999999998 9999999999999885 343320 467999999995
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
. +|++|.++++.+. +...|..+.....+++ ...+.|++. ++++
T Consensus 207 ~------------------------~E~sv~v~~~~~g-~~~~p~~~~~~~~g~~----------~~~~~Pa~~--l~~~ 249 (403)
T 3k5i_A 207 K------------------------MELAVIVVKTKDE-VLSYPTVETVQEDSIC----------KLVYAPARN--VSDA 249 (403)
T ss_dssp E------------------------EEEEEEEEECSSC-EEECCCEEEEEETTEE----------EEEEESCSS--CCHH
T ss_pred C------------------------eEEEEEEEEcCCC-EEEeCCeeeEEeCCEE----------EEEEeCCCC--CCHH
Confidence 3 3999999987544 4445554433222222 123567762 5899
Q ss_pred HHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 873 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+.+++++++.+++++||+.|+++||||++. +|++||+|||++||.+
T Consensus 250 ~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg~~~v~EiNpR~~~s 295 (403)
T 3k5i_A 250 INQKAQELARKAVAAFDGKGVFGVEMFLLE-DDSIMLCEIASRIHNS 295 (403)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TSCEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCcEEEEEeecCCCCC
Confidence 999999999999999999999999999995 6899999999999987
No 74
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=5.9e-24 Score=248.83 Aligned_cols=233 Identities=16% Similarity=0.137 Sum_probs=178.2
Q ss_pred ccCcCEEEEcCCCCCCCc--hHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhh
Q 002207 161 AANVDIVFPTIHGRFGED--GGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSN 238 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEd--g~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~ 238 (953)
..++|+|+| ..|+ ..++.+++.+|+| |+++.++.+++||..+|++|+++|||+|++..+.+.+. +.+
T Consensus 100 ~~~id~Vip-----~sE~~l~~~a~~~e~~Gi~--g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee----~~~ 168 (474)
T 3vmm_A 100 MFGADAITT-----NNELFIAPMAKACERLGLR--GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTLED----FRA 168 (474)
T ss_dssp HTTCSEEEE-----SCGGGHHHHHHHHHHTTCC--CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSHHH----HHH
T ss_pred HcCCCEEEE-----CCcccHHHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHH----HHH
Confidence 357999999 3466 5689999999999 99999999999999999999999999999998876442 333
Q ss_pred hhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhc----------CCCCcEEEeccCCCCeE-------
Q 002207 239 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----------GIDDRVVVELFLEGGSE------- 301 (953)
Q Consensus 239 ~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~----------~~~~~vlVEefI~Gg~E------- 301 (953)
+.+ .++||+||||..+++|.|+.++++.+|+.+....+... .+++.+|||+||+| .|
T Consensus 169 ~~~-----~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G-~e~~~~q~~ 242 (474)
T 3vmm_A 169 ALE-----EIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQG-EYGDWYQTE 242 (474)
T ss_dssp HHH-----HSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCB-CHHHHCSSS
T ss_pred HHH-----HcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCC-ceeeeeecc
Confidence 333 36889999999999999999999998876665543221 34689999999998 66
Q ss_pred -----EEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHH
Q 002207 302 -----FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASL 376 (953)
Q Consensus 302 -----~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~ 376 (953)
+++..+-. +++...+...+.. ... .+. ......|+.++++..++|++.|.+
T Consensus 243 ~~~~e~sv~~v~~----dg~~~~v~i~~~~---------------~~~--~~~---~~~~~~Pa~l~~~~~~~l~~~a~~ 298 (474)
T 3vmm_A 243 GYSDYISIEGIMA----DGEYFPIAIHDKT---------------PQI--GFT---ETSHITPSILDEEAKKKIVEAAKK 298 (474)
T ss_dssp SSCSEEEEEEEEE----TTEEEEEEEEEEC---------------CCB--TTB---CCEEEESCCCCHHHHHHHHHHHHH
T ss_pred cccceeEEEEEEE----CCeEEEEEEEeec---------------cCC--Ccc---ceEEEECCCCCHHHHHHHHHHHHH
Confidence 77764321 1222222222110 000 011 245678999999999999999999
Q ss_pred HHHHhCCCCee-EeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHHHHHHHHHHH
Q 002207 377 LFQRLGLCDFA-RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 455 (953)
Q Consensus 377 ~~~aLg~~G~a-rVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a 455 (953)
++++||++|.+ ||||++ +++|++||+||||+++ .++.++.+..++|+++.+++ ++.+
T Consensus 299 ~~~alG~~g~~~~vef~~-----------------~~dg~~~~iEvNpR~~--G~~~~~~~~~~tG~dl~~~~---i~~a 356 (474)
T 3vmm_A 299 ANEGLGLQNCATHTEIKL-----------------MKNREPGLIESAARFA--GWNMIPNIKKVFGLDMAQLL---LDVL 356 (474)
T ss_dssp HHHHHTCCSEEEEEEEEE-----------------EGGGEEEEEEEESSCC--STTHHHHHHHHHCCCHHHHH---HHHH
T ss_pred HHHHcCCCCccEEEEEEE-----------------cCCCCEEEEEEeCCCC--CCchHHHHHHHHCcCHHHHH---HHHH
Confidence 99999999998 699986 5688999999998887 55677888889999876654 4555
Q ss_pred h
Q 002207 456 C 456 (953)
Q Consensus 456 ~ 456 (953)
+
T Consensus 357 ~ 357 (474)
T 3vmm_A 357 C 357 (474)
T ss_dssp H
T ss_pred c
Confidence 5
No 75
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.92 E-value=9e-24 Score=244.87 Aligned_cols=245 Identities=14% Similarity=0.147 Sum_probs=184.1
Q ss_pred cCCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++. .|+. .+...|+.+|+|++|++..++.+++||..+|++ |+++|||||++..+++.+
T Consensus 66 ~~id~vv~g-----~e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~---l~~~GIptp~~~~~~~~~----- 132 (431)
T 3mjf_A 66 HDIGLTIVG-----PEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDF---LARHNIPSAEYQNFTDVE----- 132 (431)
T ss_dssp TTEEEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHH---HHHTTCSBCCEEEESCHH-----
T ss_pred hCcCEEEEC-----CchHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHH---HHHcCCCCCCeEeeCCHH-----
Confidence 468988873 3443 477889999999999999999999999999999 999999999998887532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+.. +.+. .....+|||+|
T Consensus 133 ---ea~~~~~~~-g~PvVvKp~~~~gg~GV~iv~~~~el~~---a~~~~~~~---~~~g----------~~~~~vlvEe~ 192 (431)
T 3mjf_A 133 ---AALAYVRQK-GAPIVIKADGLAAGKGVIVAMTQEEAET---AVNDMLAG---NAFG----------DAGHRIVVEEF 192 (431)
T ss_dssp ---HHHHHHHHH-CSSEEEEESSSCTTCSEEEECSHHHHHH---HHHHHHTT---HHHH----------CCCCCEEEEEC
T ss_pred ---HHHHHHHHc-CCeEEEEECCCCCCCcEEEeCCHHHHHH---HHHHHHhh---cccc----------CCCCeEEEEEe
Confidence 234455678 6999999999999999999999998876 45544310 0000 01368999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+++....+. ..+ ....+++++.+++.|.+..+.|++. +
T Consensus 193 i~G~-------------------------E~sv~~~~dg~~~~~~~-~~~--~~~~~~~~~~g~~~gg~g~~~P~~~--l 242 (431)
T 3mjf_A 193 LDGE-------------------------EASFIVMVDGENVLPMA-TSQ--DHKRVGDGDTGPNTGGMGAYSPAPV--V 242 (431)
T ss_dssp CCSE-------------------------EEEEEEEEESSCEEECC-CBE--ECCEEETTTEEEECSCSEEEESCTT--S
T ss_pred eCCc-------------------------EEEEEEEEcCCEEEEEE-eeE--eceecccCCCCCCCCCceEEeeCCC--C
Confidence 9997 99999997655433332 221 2345778888888787788888873 6
Q ss_pred CHHHHHHHHHH----HHHHHHHcCC--cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 870 STEALDKCKQR----IELIANALQL--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 870 ~~~~~~~i~~~----a~~~~~aLg~--~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++++.+++.+. +.++++++|+ .|+.++||+++. +|++||+|+|++||.+....+.+ +. + .+|++.
T Consensus 243 ~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g~~~viEiN~R~G~~~~~~i~~-~~---g----~dl~~~ 313 (431)
T 3mjf_A 243 TDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DGQPKVIEFNCRFGDPETQPIML-RM---R----SDLVEL 313 (431)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TSCEEEEEECGGGSTTTHHHHHH-HB---C----SCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CCCeEEEEEecCCCCcHHHHHHH-HH---C----CCHHHH
Confidence 88998888876 6788888887 799999999985 68899999999999544332222 21 1 256666
Q ss_pred HHHHHh
Q 002207 944 VLDLGS 949 (953)
Q Consensus 944 li~~a~ 949 (953)
+++.+.
T Consensus 314 ~~~~~~ 319 (431)
T 3mjf_A 314 CLAGTQ 319 (431)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 666554
No 76
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.92 E-value=6.4e-24 Score=244.89 Aligned_cols=222 Identities=14% Similarity=0.157 Sum_probs=170.3
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++ .+|++.++++++.++. ++|+++.++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 69 ~~~d~V~~-----~~E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~-------- 131 (412)
T 1vkz_A 69 PEEDIVIP-----GSEEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRF---MKKYGIRTARFEVAETPE-------- 131 (412)
T ss_dssp CSSCEECC-----SSGGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEESSHH--------
T ss_pred cCCCEEEE-----CCcHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCEEEECCHH--------
Confidence 46799988 2688888899999998 889999999999999999999 999999999998876532
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++.++... ...+ ....+|||+||+|
T Consensus 132 e~~~~~~~~-g~PvvvKp~~~~gg~Gv~~v~~~~el~~---a~~~~~~~~------~~~g-------~~~~vlvEe~i~G 194 (412)
T 1vkz_A 132 ELREKIKKF-SPPYVIKADGLARGKGVLILDSKEETIE---KGSKLIIGE------LIKG-------VKGPVVIDEFLAG 194 (412)
T ss_dssp HHHHHHTTS-CSSEEEEESSCCSSCCEEEESSHHHHHH---HHHHHHHTS------SSTT-------CCSCEEEEECCCS
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHhhc------cccC-------CCCeEEEEECCcC
Confidence 234455678 6999999999999999999999998886 455554310 0000 0248999999999
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
+ |++|.++.+ |..+...+..+ .....++++.+++.+....+.|++ ++++
T Consensus 195 ~-------------------------E~sv~~~~d-g~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~P~~---l~~~ 243 (412)
T 1vkz_A 195 N-------------------------ELSAMAVVN-GRNFVILPFVR--DYKRLMDGDRGPNTGGMGSWGPVE---IPSD 243 (412)
T ss_dssp E-------------------------EEEEEEEEE-TTEEEECCCCE--ECCEEETTTEEEECSCSEEEECCC---CCHH
T ss_pred c-------------------------EEEEEEEEC-CCEEEEeeeeE--eeeeccCCCCCCCCCCceEEECCC---CCHH
Confidence 7 999999984 33322222212 123456777777777777788887 6899
Q ss_pred HHHHHHHHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 873 ALDKCKQRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
+.+++++++++++++| ++.|+.++||+++. +| +||+|||++||.+..
T Consensus 244 ~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 244 TIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD-PYILEYNVRLGDPET 295 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC-cEEEEEecCCCCCcc
Confidence 9999999999999999 78899999999985 57 999999999998754
No 77
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.91 E-value=1.2e-23 Score=244.38 Aligned_cols=245 Identities=17% Similarity=0.127 Sum_probs=185.9
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+.. +...|+.+|+|++|++..++.+|+||..+|++ |+++|||||++..+++.+
T Consensus 82 ~~id~vv~g-----~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~---l~~~GIp~p~~~~~~~~~----- 148 (442)
T 3lp8_A 82 EKIELVVIG-----PETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKEL---CMRYGIPTAKYGYFVDTN----- 148 (442)
T ss_dssp TTCCEEEEC-----SHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHH---HHHHTCCBCCEEEESSHH-----
T ss_pred hCCCEEEEC-----CcHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHH---HHHCCCCCCCEEEECCHH-----
Confidence 468999972 46653 56788999999999999999999999999999 999999999998887532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+.. +.+.. ....+|||+|
T Consensus 149 ---ea~~~~~~~-g~PvVvKp~~~~gg~GV~iv~~~eel~~---a~~~~~~~---~~~g~----------~~~~vlvEe~ 208 (442)
T 3lp8_A 149 ---SAYKFIDKH-KLPLVVKADGLAQGKGTVICHTHEEAYN---AVDAMLVH---HKFGE----------AGCAIIIEEF 208 (442)
T ss_dssp ---HHHHHHHHS-CSSEEEEESSCCTTTSEEEESSHHHHHH---HHHHHHTS---CTTGG----------GGSSEEEEEC
T ss_pred ---HHHHHHHHc-CCcEEEeECCCCCCCeEEEeCCHHHHHH---HHHHHHhh---cccCC----------CCCeEEEEEe
Confidence 234456678 6999999999999999999999988875 55555421 00100 1367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |+++.++.+++....+ +. ......+++++.+++.+.+..+.|++. +
T Consensus 209 i~G~-------------------------E~sv~~~~dg~~~~~~-~~--~~~~~~~~~~~~g~~~gg~g~~~P~~~--l 258 (442)
T 3lp8_A 209 LEGK-------------------------EISFFTLVDGSNPVIL-GV--AQDYKTIGDNNKGPNTGGMGSYSKPNI--I 258 (442)
T ss_dssp CCSE-------------------------EEEEEEEEESSCEEEE-EE--EEECCEEEGGGEEEECSCSEEEECTTS--S
T ss_pred ecCc-------------------------EEEEEEEECCCeEEEe-EE--eEeeeecccCCCCCCCCCcEEEeeCCC--C
Confidence 9997 9999999765433222 22 223456788888888777778888863 6
Q ss_pred CHHHHHHHHHH----HHHHHHHcCC--cceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 870 STEALDKCKQR----IELIANALQL--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 870 ~~~~~~~i~~~----a~~~~~aLg~--~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++++.+++++. +.++++++|+ .|+.++||+++. +| +||+|+|++||.+....+.+. . -.+|++.
T Consensus 259 ~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~~~~~~~~~---~-----~~dl~~~ 328 (442)
T 3lp8_A 259 TQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKK-NE-PKLLEYNVRFGDPETQSILPR---L-----NSDFLKL 328 (442)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTHHHHHGGG---B-----CSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-eEEEEEecCCCCCchhhhHHH---h-----CCCHHHH
Confidence 89999999887 8899999999 799999999995 56 999999999996544322221 1 1266666
Q ss_pred HHHHHhh
Q 002207 944 VLDLGSE 950 (953)
Q Consensus 944 li~~a~~ 950 (953)
+++.+..
T Consensus 329 ~~~~~~G 335 (442)
T 3lp8_A 329 LSLTAKG 335 (442)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 6666553
No 78
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.91 E-value=1.1e-23 Score=234.65 Aligned_cols=264 Identities=12% Similarity=0.065 Sum_probs=180.0
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEE--EEEEEecCCceeeecccccccCCCCCccccccccccccCcc
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLV--RCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V--~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (953)
++|||+|++ .|+++|+ .++++|++.||+| +.++.+.. . .. .
T Consensus 10 ~~m~i~il~----~~~~~s~----~l~~al~~~G~~v~~~~~d~~~~--------~----------~~--~--------- 52 (324)
T 1z2n_X 10 QTVSLFIWL----PESKQKT----LFISTKNHTQFELNNIIFDVTLS--------T----------EL--P--------- 52 (324)
T ss_dssp CEEEEEEEC----CHHHHHH----HBSSCCSEEEEEETTEEEEEEEE--------S----------SC--C---------
T ss_pred CcEEEEEEE----chhhhhh----hHHHHHHhcCcEEEEEEecCCCC--------c----------cc--c---------
Confidence 347999999 5778875 8899999999999 87654220 0 00 0
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHc-----CCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecC
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEK-----YNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQG 228 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~-----~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~ 228 (953)
...+|+||+.+++.. +.+++.|+. .|+|+ ++++.++++++||..++++|+++|||+|+++.+.+
T Consensus 53 -------~~~~d~v~~~~~~~~---~~~~~~l~~~~~~~~g~~~-~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~ 121 (324)
T 1z2n_X 53 -------DKEPNAIITKRTHPV---GKMADEMRKYEKDHPKVLF-LESSAIHDMMSSREEINALLIKNNIPIPNSFSVKS 121 (324)
T ss_dssp -------SSCCSEEEECCSCSS---SHHHHHHHHHHHHCTTSEE-ETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESS
T ss_pred -------CCCceEEEEeccchH---HHHHHHHHHHHHhCCCCeE-eCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCC
Confidence 015899999887644 456777666 89996 47899999999999999999999999999998866
Q ss_pred CccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCc---eeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCC-CeEEEE
Q 002207 229 SEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSS---IGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG-GSEFTA 304 (953)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS---~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~G-g~E~tv 304 (953)
.+ ++.++++.. ..+||+||||..+++| .|+.++++.+++. .++..+|||+||+| ++|++|
T Consensus 122 ~~----~~~~~~~~~---~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~---------~~~~~~lvqe~i~~~g~~~~v 185 (324)
T 1z2n_X 122 KE----EVIQLLQSK---QLILPFIVKPENAQGTFNAHQMKIVLEQEGID---------DIHFPCLCQHYINHNNKIVKV 185 (324)
T ss_dssp HH----HHHHHHHTT---CSCSSEEEEESBCSSSSGGGEEEEECSGGGGT---------TCCSSEEEEECCCCTTCEEEE
T ss_pred HH----HHHHHHHHc---CCCCCEEEeeCCCCCCccceeeEEEeCHHHHh---------hcCCCEEEEEccCCCCcEEEE
Confidence 43 233333221 1458999999998777 9999999987643 24678999999964 489999
Q ss_pred EEEEeCCCCccccEEecceEEEEeccCccccc-cCCcccccc------------cCc---------cCCCce-EEEcCCC
Q 002207 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR-EKDAIFNYR------------RKY---------LPTQQV-AYHTPPR 361 (953)
Q Consensus 305 ~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~-~~~~~~dy~------------~Ky---------~~~~~~-~~~~Pa~ 361 (953)
.|++ +. .... .+... .+...-. ....+|++. +|| ...... ....|..
T Consensus 186 ~v~g----~~--~~~~--~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 255 (324)
T 1z2n_X 186 FCIG----NT--LKWQ--TRTSL--PNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNL 255 (324)
T ss_dssp EEET----TE--EEEE--EECCC--CCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTS
T ss_pred EEEC----CE--EEEE--EecCc--ccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCccccC
Confidence 9983 21 2111 11100 0000000 000144443 111 111000 0012334
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcc-cCCcEEEEeecCCCCCCCcchHH
Q 002207 362 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQTSFLF 434 (953)
Q Consensus 362 l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~-~dG~~~~lEIN~~PG~t~~S~~p 434 (953)
+++ ++++++|.+++++|||. +++|||++ + ++|++||+|||++|||+..+.++
T Consensus 256 ~~~---~~i~~~a~~~~~~lg~~-~~~vD~~~-----------------~~~~g~~~vlEvN~~Pg~~~~~~~~ 308 (324)
T 1z2n_X 256 TSE---AEMRDLAYKVRCALGVQ-LCGIDFIK-----------------ENEQGNPLVVDVNVFPSYGGKVDFD 308 (324)
T ss_dssp CCH---HHHHHHHHHHHHHHTCS-EEEEEEEC-----------------GGGCSSCEEEEEEESCCTTSCBCHH
T ss_pred CCH---HHHHHHHHHHHHHhCCc-EEeeEEEE-----------------EcCCCCEEEEEEcCCCCcCCCCCHH
Confidence 442 57899999999999997 99999976 4 46899999999999999987665
No 79
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.91 E-value=1.1e-22 Score=231.84 Aligned_cols=202 Identities=18% Similarity=0.203 Sum_probs=153.1
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++...... ..+...|+.+|+| +|+++.++.+|+||..+|++ |+++|||+|++..+.+.+ +
T Consensus 61 ~~~d~v~~~~e~~~---~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~-------~ 126 (380)
T 3ax6_A 61 KGSDVTTYDLEHID---VQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEF---LKKNGIPVPEYKLVKDLE-------S 126 (380)
T ss_dssp HTCSEEEESCSCSC---HHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHH---HHHTTCCCCCEEECSSHH-------H
T ss_pred hcCCEEEecccCCC---HHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHH---HHHcCCCCCCeEEeCCHH-------H
Confidence 46899988653221 2345678999999 78999999999999999999 999999999998775432 1
Q ss_pred HHHHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 713 IWHELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
+.+++ +||+||||..++ +|.||.++++.+|+..+ + ...+|||+||+
T Consensus 127 ----~~~~~-~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~---~-------------------------~~~~lvEe~i~ 173 (380)
T 3ax6_A 127 ----DVREF-GFPVVQKARKGGYDGRGVFIIKNEKDLENA---I-------------------------KGETYLEEFVE 173 (380)
T ss_dssp ----HHHTT-CSSEEEEESCCC-----EEEECSGGGGGGC---C-------------------------CSSEEEEECCC
T ss_pred ----HHHhc-CCCEEEEecCCCCCCCCeEEECCHHHHHHH---h-------------------------cCCEEEEeccC
Confidence 34567 699999999999 99999999999987631 1 15699999999
Q ss_pred -CcccccccccccccchhhhhcCCCceeEEEEEEEcC-CCCceeeCceEEEe--cCCccccccccccCCCceeEcCCCCC
Q 002207 792 -TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK-CGSMHSLMPSVTVK--ESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 792 -G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~-~~~~~~~~p~~~i~--~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
|+ |++|.++.+ +|.... .+..+.. ...+++ ...+.|++
T Consensus 174 ~g~-------------------------e~sv~~~~~~~G~~~~-~~~~~~~~~~~~~~~----------~~~~~p~~-- 215 (380)
T 3ax6_A 174 IEK-------------------------ELAVMVARNEKGEIAC-YPVVEMYFDEDANIC----------DTVIAPAR-- 215 (380)
T ss_dssp EEE-------------------------EEEEEEEECSSCCEEE-EEEEEEC------------------CEEEESCS--
T ss_pred CCe-------------------------eEEEEEEECCCCCEEE-ECCeeeeecccCCee----------EEEECCCC--
Confidence 65 999999986 444432 3333221 111111 12467776
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
+++++.+++++.+++++++||+.|++++||+++. +|++||+|||++||.+..
T Consensus 216 -l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g~~~viEiN~R~~~~~~ 267 (380)
T 3ax6_A 216 -IEEKYSKIAREIATSVVEALEGVGIFGIEMFLTK-QGEILVNEIAPRPHNSGH 267 (380)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSCEEEEEEESSCCGGGT
T ss_pred -CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEecCCCCCCce
Confidence 5889999999999999999999999999999995 689999999999998764
No 80
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.91 E-value=9e-24 Score=237.01 Aligned_cols=289 Identities=17% Similarity=0.122 Sum_probs=195.0
Q ss_pred hcCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccC
Q 002207 72 ARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 72 ~~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (953)
++..++.+|+..+ +....=|+. -+++.++|++.||+++.++.+.. +.
T Consensus 13 ~~~~~~~~vG~~l---~~kk~~~~~-~~~l~~al~~~G~~~~~iD~~~~------------------~~----------- 59 (346)
T 2q7d_A 13 QTFLKGKRVGYWL---SEKKIKKLN-FQAFAELCRKRGMEVVQLNLSRP------------------IE----------- 59 (346)
T ss_dssp GGGGTTCEEEEEC---CHHHHHHHT-HHHHHHHHHTTTCEEEECCTTSC------------------SG-----------
T ss_pred ccccCceEEEEEE---Ccccchhhh-HHHHHHHHHhCCcEEEEcccccc------------------hh-----------
Confidence 3344456787776 111112222 46799999999999986543211 00
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCC--------chHHHHHHHc----CCccEECCCHHHHHHhccHHHHHHHHHHC---
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGE--------DGGIQEVLEK----YNVPFVGTGSRACRQAFDKYDASLEMSKQ--- 216 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GE--------dg~iq~lle~----~gIpyvGs~~~a~~i~~DK~~~k~~l~~~--- 216 (953)
. ...+|+||+.+||..|| ++.+|.+++. .|+|.+ +++.++..|.||..|.++|+++
T Consensus 60 ------~--~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~ 130 (346)
T 2q7d_A 60 ------E--QGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVL-DPLPAIRTLLDRSKSYELIRKIEAY 130 (346)
T ss_dssp ------G--GCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------h--cCCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEc-CCHHHHHHhhhHHHHHHHHHhhccc
Confidence 0 12689999999998887 5788877654 478765 7899999999999999999997
Q ss_pred ----CCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCC-C-CceeEEEeCCHHHHHHHHHHhHhcCCCCcE
Q 002207 217 ----GFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA-G-SSIGVTVAYGVIDSLKKAKGIILEGIDDRV 290 (953)
Q Consensus 217 ----Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~-g-sS~GV~~v~~~~el~~~a~~~~~~~~~~~v 290 (953)
|||||+++++.+... .++.+.+.. ..++||+||||..+ | +|.|+.++++.+++.. ++..+
T Consensus 131 ~~~~gIp~P~t~~~~~~~~--~~~~~~~~~---~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~---------~~~~~ 196 (346)
T 2q7d_A 131 MEDDRICSPPFMELTSLCG--DDTMRLLEK---NGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNA---------IQPPC 196 (346)
T ss_dssp HCBTTEECCCEEEECSCCC--TTHHHHHHH---TTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC-----------CCE
T ss_pred ccCCCCCCCCEEEEeCCCH--HHHHHHHHh---cCCCCCEEEEecCCCcceeeeeEEecCHHHHHh---------cCCCE
Confidence 999999999876311 011111111 13678999999974 3 3889999999887542 35679
Q ss_pred EEeccCC-CCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccc-cCCccccccc-CccCCCceEEEcC-------C
Q 002207 291 VVELFLE-GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR-EKDAIFNYRR-KYLPTQQVAYHTP-------P 360 (953)
Q Consensus 291 lVEefI~-Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~-~~~~~~dy~~-Ky~~~~~~~~~~P-------a 360 (953)
+|||||+ +|++++|.|++ +. .++ .. .....+ ..+. ...++|+|.+ ||..++.+.+.+| +
T Consensus 197 lvQefI~~~G~dirv~VvG----~~--v~~--~~--r~sl~~-~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~ 265 (346)
T 2q7d_A 197 VVQNFINHNAVLYKVFVVG----ES--YTV--VQ--RPSLKN-FSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVF 265 (346)
T ss_dssp EEEECCCCTTEEEEEEEET----TE--EEE--EE--EECCCC-CC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCC
T ss_pred EEEEeeCCCCeEEEEEEEC----CE--EEE--EE--EecCCC-cCcCccccccccccceeeccCCccccccccccccccc
Confidence 9999996 34999999994 22 211 11 100000 0011 1356899998 7664444444455 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCccc-CCcEEEEeecCCCCCCCcchHHHHHHH
Q 002207 361 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASK 439 (953)
Q Consensus 361 ~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~-dG~~~~lEIN~~PG~t~~S~~p~~a~~ 439 (953)
.+++ .++++++|.+++++|||+.+ +||+++ +. +|++||+|||+.|||+..+
T Consensus 266 ~~~~--~~el~~lA~~a~~alGl~~~-gvDii~-----------------~~~~g~~~VlEVN~~PG~~g~~-------- 317 (346)
T 2q7d_A 266 ERPS--DEVIRELSRALRQALGVSLF-GIDIII-----------------NNQTGQHAVIDINAFPGYEGVS-------- 317 (346)
T ss_dssp CCCC--HHHHHHHHHHHHHHHCCCEE-EEEEEE-----------------CTTTCCEEEEEEEESCCCTTCT--------
T ss_pred cCCC--hHHHHHHHHHHHHHhCCceE-eeEEEe-----------------ecCCCCEEEEEEeCCccccccc--------
Confidence 3443 46789999999999999955 799876 43 5789999999999999875
Q ss_pred hCCCHHHHHHHHHHHHhhh
Q 002207 440 VGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 440 ~G~s~~~ll~~li~~a~~r 458 (953)
++.+++..+|..++.+
T Consensus 318 ---~~~~~i~~~l~~~~~~ 333 (346)
T 2q7d_A 318 ---EFFTDLLNHIATVLQG 333 (346)
T ss_dssp ---THHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhhc
Confidence 3456666666666654
No 81
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.91 E-value=2.6e-23 Score=240.69 Aligned_cols=241 Identities=19% Similarity=0.200 Sum_probs=167.7
Q ss_pred cCCcEEEEecCCCCCCcc--HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 633 ENQATVFIAVHGGIGEDG--TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg--~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
..+|.|++. .|.. ....+.|.+|+| |+++.++.+|+||..||++ |+++|||||++..+++.+...
T Consensus 74 ~~id~V~~~-----~e~~~~~~a~l~e~lglp--g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~~~~--- 140 (425)
T 3vot_A 74 FPFDGVMTL-----FEPALPFTAKAAEALNLP--GLPFTTMENCRNKNKTRSI---LQQNGLNTPVFHEFHTLADLE--- 140 (425)
T ss_dssp SCCSEEECC-----CGGGHHHHHHHHHHTTCS--SCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEESSGGGGT---
T ss_pred cCCCEEEEC-----CchhHHHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHH---HHHCCCCCCceeccCcHHHHH---
Confidence 356777653 2333 345677999999 8999999999999999999 999999999999987643211
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
..++ +||+||||..+++|.||.+|++.+||.++ ++.+....... +.. .......+|||+||
T Consensus 141 -------~~~~-g~P~vvKp~~g~gs~Gv~~v~~~~el~~a---~~~~~~~~~~~-~~~-------~~~~~~~~lvEe~i 201 (425)
T 3vot_A 141 -------NRKL-SYPLVVKPVNGFSSQGVVRVDDRKELEEA---VRKVEAVNQRD-LNR-------FVHGKTGIVAEQFI 201 (425)
T ss_dssp -------TCCC-CSSEEEEESCC-----CEEECSHHHHHHH---HHHHHHHTTSS-HHH-------HHTTCCCEEEEECC
T ss_pred -------Hhhc-CCcEEEEECCCCCCCCceEechHHHHHHH---HHHHHhhhhhh-hhh-------hccCCCcEEEEEEe
Confidence 2467 69999999999999999999999999864 44443221000 000 00125789999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
+|+ |++|.++..+|....+......... ..+. .....+.|++ ++
T Consensus 202 ~G~-------------------------e~sv~~~~~~g~~~~~~~~~~~~~~-------~~~~-~~~~~~~Pa~---l~ 245 (425)
T 3vot_A 202 DGP-------------------------EFAIETLSIQGNVHVLSIGYKGNSK-------GPFF-EEGVYIAPAQ---LK 245 (425)
T ss_dssp CSC-------------------------EEEEEEEEETTEEEEEEEEEEECCC-------CSBC-CCCEEEESCC---CC
T ss_pred cCc-------------------------EEEEEEEEeCCcEEEEeEEEEeccC-------CCcc-ccceEeeccc---CC
Confidence 997 9999988776654433221111111 1111 2235577887 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEEcCCCcEEEEeeCCCCCCCCCch-HHHHHHhcCCCCCHHHHHHHHHHHH
Q 002207 871 TEALDKCKQRIELIANALQLE-GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV-LIHQALSEQPPMYPHQFFRKVLDLG 948 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~-G~ariDf~v~~~~g~~~viEINt~PGlt~~S~-l~~~a~~~~~~~yp~~l~~~li~~a 948 (953)
++..+++++.+.+++++||+. |++++|||++. +|++||||||++||.+..+. +.+.+. | . ++++.+|+.+
T Consensus 246 ~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG~~~~iEiN~R~gG~~~~~~l~~~~~---G-~---d~~~~~i~~a 317 (425)
T 3vot_A 246 EETRLAIVKEVTGAVSALGIHQGPAHTELRLDK-DGTPYVIEVGARIGGSGVSHYIVKEST---G-I---NFMQLVLQNA 317 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TCCEEEEEEESSCGGGGHHHHHHHHHH---C-C---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CCcEEEEEEecCCCCCCchHHHHHHHH---C-C---CHHHHHHHHH
Confidence 999999999999999999995 99999999985 79999999999998876542 334333 2 1 4555566665
Q ss_pred h
Q 002207 949 S 949 (953)
Q Consensus 949 ~ 949 (953)
+
T Consensus 318 l 318 (425)
T 3vot_A 318 L 318 (425)
T ss_dssp H
T ss_pred C
Confidence 5
No 82
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.91 E-value=7e-23 Score=244.77 Aligned_cols=233 Identities=14% Similarity=0.200 Sum_probs=175.0
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcC--CCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEE-
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEG--VPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR- 700 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~g--IPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v- 700 (953)
+.+++.++ ..+|+|++. ||..+|+..++++|+.+| ++++|++..++.+|+||..++++ |+++|||+|++..+
T Consensus 120 ~~l~~~a~~~~id~Vi~g-~G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~---l~~~GIp~p~~~~~~ 195 (554)
T 1w96_A 120 DLIVDIAERADVDAVWAG-WGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIV---AQSAKVPCIPWSGTG 195 (554)
T ss_dssp HHHHHHHHHTTCSEEECC-SSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHH---HHHTTCCBCCBTTTT
T ss_pred HHHHHHHHHhCCCEEEEC-CCccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHH---HHHCCCCcCCccccc
Confidence 34444433 468999987 799999999999999999 99999999999999999999999 89999999998643
Q ss_pred ----eCcc-----------c---cCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhC
Q 002207 701 ----RKED-----------L---LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRI 762 (953)
Q Consensus 701 ----~~~~-----------~---~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~ 762 (953)
.... + ...+ .+.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.+....
T Consensus 196 ~~~~~~~~~~~l~~ip~~~~~~~~~~~-~~e~~~~~~~~-g~PvVvKp~~g~gg~Gv~~v~~~~el~~---a~~~~~~~~ 270 (554)
T 1w96_A 196 VDTVHVDEKTGLVSVDDDIYQKGCCTS-PEDGLQKAKRI-GFPVMIKASEGGGGKGIRQVEREEDFIA---LYHQAANEI 270 (554)
T ss_dssp CCCCEECTTTCCEECCHHHHGGGSCSS-HHHHHHHHHHH-CSSEEEEETTCCTTTTEEEECSHHHHHH---HHHHHHHHS
T ss_pred cccccccccccccccccccccccCCCC-HHHHHHHHHHc-CCCEEEEECCCCCCceEEEECCHHHHHH---HHHHHHhhc
Confidence 0000 0 0001 12233445678 6999999999999999999999999886 555554431
Q ss_pred CCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEe
Q 002207 763 PPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVK 841 (953)
Q Consensus 763 ~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~ 841 (953)
....++||+||+|. +|++|.++++. |..+.+.+...
T Consensus 271 -----------------~~~~vlvEe~i~g~------------------------~e~sv~vl~d~~G~vv~l~~~~~-- 307 (554)
T 1w96_A 271 -----------------PGSPIFIMKLAGRA------------------------RHLEVQLLADQYGTNISLFGRDC-- 307 (554)
T ss_dssp -----------------TTCCEEEEECCCSC------------------------EEEEEEEEECTTSCEEEEEEEEE--
T ss_pred -----------------cCCCEEEEEecCCC------------------------cEEEEEEEEcCCCCEEEEeeeee--
Confidence 14689999999974 49999999875 44333322111
Q ss_pred cCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 842 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 842 ~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
.+.++..|+. ...|++. +++++.+++++.+.+++++||+.|++++||+++.++|++||+|||+++|-+
T Consensus 308 ---~~~~~~~k~~-----~~~P~~~--l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~ 375 (554)
T 1w96_A 308 ---SVQRRHQKII-----EEAPVTI--AKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVE 375 (554)
T ss_dssp ---EEEETTEEEE-----EEESCCS--SCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTT
T ss_pred ---eeEeecccee-----eeCCCcC--CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcc
Confidence 1223333433 2356542 578999999999999999999999999999997336899999999999876
No 83
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.91 E-value=2.8e-22 Score=229.27 Aligned_cols=212 Identities=23% Similarity=0.231 Sum_probs=158.0
Q ss_pred cCCcEEEEecCCCCCCccHH--HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHH-HHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGTL--QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~i--q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l-~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++.. |+..+ ...|+.+|+ ++|+++.++.+|+||..+|++ | +++|||+|++..+.+.+
T Consensus 73 ~~~d~v~~~~-----e~~~~~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~---l~~~~gip~p~~~~~~~~~----- 138 (391)
T 1kjq_A 73 EKPHYIVPEI-----EAIATDMLIQLEEEGL-NVVPCARATKLTMNREGIRRL---AAEELQLPTSTYRFADSES----- 138 (391)
T ss_dssp HCCSEEEECS-----SCSCHHHHHHHHHTTC-EESSCHHHHHHHHSHHHHHHH---HHTTSCCCBCCEEEESSHH-----
T ss_pred cCCCEEEECC-----CcCCHHHHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHH---HHHhCCCCCCCeeeeCCHH-----
Confidence 4689999865 33323 345889999 679999999999999999998 8 79999999999876532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.+.... + .....+|||+|
T Consensus 139 ---~~~~~~~~~-g~P~vvKp~~g~gg~Gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~lvEe~ 196 (391)
T 1kjq_A 139 ---LFREAVADI-GYPCIVKPVMSSSGKGQTFIRSAEQLAQ---AWKYAQQGG------R---------AGAGRVIVEGV 196 (391)
T ss_dssp ---HHHHHHHHH-CSSEEEEESCC---CCCEEECSGGGHHH---HHHHHHHHS------G---------GGCCCEEEEEC
T ss_pred ---HHHHHHHhc-CCCEEEEeCCCCCCCCeEEECCHHHHHH---HHHHHHhhc------c---------cCCCCEEEEEe
Confidence 234455678 6999999999999999999999999886 454443320 0 01468999999
Q ss_pred cc-CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VE-TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~-G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+ |. |+++.++.+.+... +.+...... ..+++..+ +.|++
T Consensus 197 i~~g~-------------------------E~sv~~~~~~~g~~-~~~~~~~~~--~~~~~~~~--------~~p~~--- 237 (391)
T 1kjq_A 197 VKFDF-------------------------EITLLTVSAVDGVH-FCAPVGHRQ--EDGDYRES--------WQPQQ--- 237 (391)
T ss_dssp CCCSE-------------------------EEEEEEEEETTEEE-ECCCEEEEE--ETTEEEEE--------EECCC---
T ss_pred cCCCe-------------------------EEEEEEEEeCCCeE-EccCcceEE--ECCEEEEE--------EeCCC---
Confidence 99 65 99999988654432 333332211 12333322 34665
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++++..+++++.+.+++++||+.|++++||+++. + ++||+|||++||.+..
T Consensus 238 l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-~-~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 238 MSPLALERAQEIARKVVLALGGYGLFGVELFVCG-D-EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEET-T-EEEEEEEESSCCGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-C-cEEEEEEECCCCCCcc
Confidence 5889999999999999999999999999999984 3 8999999999996643
No 84
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.91 E-value=1.3e-22 Score=236.41 Aligned_cols=249 Identities=16% Similarity=0.207 Sum_probs=181.7
Q ss_pred HHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeC
Q 002207 626 EWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRK 702 (953)
Q Consensus 626 ~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~ 702 (953)
.+++.++ ..+|+|+|. +|...|+..+...|+.+|+|++|+++.++.++.||..+|++ |+++|||+|++. .+.+
T Consensus 69 ~l~~~~~~~~~d~i~p~-~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~---l~~~Gip~p~~~~~~~~~ 144 (446)
T 3ouz_A 69 AIIAAAEIAEADAIFPG-YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQV---MQRAGVPVIPGSDGALAG 144 (446)
T ss_dssp HHHHHHHHHTCSEEECC-SSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHH---HHHTTCCBCSBCSSSCCS
T ss_pred HHHHHHHHhCcCEEEEC-CcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHH---HHHcCCCcCCCcccCCCC
Confidence 3344333 468999887 58888999999999999999999999999999999999999 999999999986 4433
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHH-HhhCCCCCcccccccccCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC-LLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a-~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
. +.+.++.+++ +||+||||..+++|.||.+|++.+|+.++.+.+... .... .+
T Consensus 145 ~--------~e~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~-----------------~~ 198 (446)
T 3ouz_A 145 A--------EAAKKLAKEI-GYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAF-----------------GD 198 (446)
T ss_dssp H--------HHHHHHHHHH-CSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHH-----------------SC
T ss_pred H--------HHHHHHHHHh-CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhc-----------------CC
Confidence 2 2244556778 699999999999999999999999998743333221 1110 14
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeE
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 861 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~ 861 (953)
..++||+||+|. +|+++.++++........+..... +.....| ....
T Consensus 199 ~~~lvEe~i~g~------------------------~e~~v~v~~d~~g~~~~~~~~~~~----~~~~~~~-----~~~~ 245 (446)
T 3ouz_A 199 GTMYMEKYIQNP------------------------RHIEVQVIGDSFGNVIHVGERDCS----MQRRHQK-----LIEE 245 (446)
T ss_dssp CCEEEEECCSSC------------------------EEEEEEEEECTTSCEEEEEEEEEE----EEETTEE-----EEEE
T ss_pred CCEEEEeCCCCC------------------------cEEEEEEEEcCCCCEEEEeeceee----eeecCce-----EEEE
Confidence 679999999994 499999998753322222111110 1111111 1235
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHH
Q 002207 862 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFF 941 (953)
Q Consensus 862 ~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~ 941 (953)
.|++ .+++++.+++.+.+.+++++||+.|++++||+++. +|++||+|||++|+-+ ..+..++. | .+++
T Consensus 246 ~p~~--~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~~iEiNpR~~g~--~~~~~~~~---G----~dl~ 313 (446)
T 3ouz_A 246 SPAI--LLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDK-NLDFYFIEMNTRLQVE--HCVSEMVS---G----IDII 313 (446)
T ss_dssp ESCT--TSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEESSCCTT--HHHHHHHH---C----CCHH
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeC-CCCEEEEEeECCCCCc--ceeeeeee---C----CCHH
Confidence 5664 26899999999999999999999999999999985 5899999999999865 23344333 2 1555
Q ss_pred HHHHHHHh
Q 002207 942 RKVLDLGS 949 (953)
Q Consensus 942 ~~li~~a~ 949 (953)
+.+++.++
T Consensus 314 ~~~~~~~~ 321 (446)
T 3ouz_A 314 EQMIKVAE 321 (446)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 66666554
No 85
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.91 E-value=7.7e-23 Score=232.27 Aligned_cols=209 Identities=22% Similarity=0.172 Sum_probs=159.1
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++..+... .+.++ .|+.+| ++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 58 ~~~d~v~~~~e~~~--~~~~~-~l~~~g--~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~-------- 121 (369)
T 3aw8_A 58 EGLALVTYEFENVP--VEAAR-RLEGRL--PLYPPAKALEVAQDRLREKTF---FQGLGVPTPPFHPVDGPE-------- 121 (369)
T ss_dssp TTCSEEEECCTTCC--HHHHH-HHHHHS--CBSSCHHHHHHHTCHHHHHHH---HHHHTCCCCCEEEESSHH--------
T ss_pred hCCCEEEECCCCcC--HHHHH-HHHHcC--CcCCCHHHHHHhcCHHHHHHH---HHHCCCCCCCceeeCCHH--------
Confidence 57899999886653 33444 779999 689999999999999999999 999999999999886532
Q ss_pred HHHHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 713 IWHELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++.+++ +||+||||..++ +|.||.++++.+|+.+ +++.. ....++||+||+
T Consensus 122 ~~~~~~~~~-g~P~vvKp~~~~~~g~Gv~~v~~~~el~~---~~~~~---------------------~~~~~lvEe~i~ 176 (369)
T 3aw8_A 122 DLEEGLKRV-GLPALLKTRRGGYDGKGQALVRTEEEALE---ALKAL---------------------GGRGLILEGFVP 176 (369)
T ss_dssp HHHHHHTTT-CSSEEEEECCC------EEEECSHHHHHH---HHTTT---------------------CSSSEEEEECCC
T ss_pred HHHHHHHHc-CCCEEEEEcCCCCCcceEEEECCHHHHHH---HHHhc---------------------CCCcEEEEEcCC
Confidence 234455678 699999999999 9999999999888774 33221 046799999999
Q ss_pred -CcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 792 -TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 792 -G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+ |++|.++.+. |... ..+..+......+++ ..+.|++. +
T Consensus 177 ~g~-------------------------e~sv~~~~d~~G~~~-~~~~~~~~~~~~~~~----------~~~~p~~~--l 218 (369)
T 3aw8_A 177 FDR-------------------------EVSLLAVRGRTGEVA-FYPLVENRHWGGILR----------LSLAPAPG--A 218 (369)
T ss_dssp CSE-------------------------EEEEEEEECTTSCEE-ECCCEEEEEETTEEE----------EEEESCTT--C
T ss_pred CCE-------------------------EEEEEEEECCCCCEE-EECCeeeeeeCCEEE----------EEECCCCC--C
Confidence 76 9999999864 4443 344433221222222 24667652 5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
+++..+++++.+.+++++||+.|++++||+++. |++||+|||++||.+...
T Consensus 219 ~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~~~~viEiN~R~~~~~~~ 269 (369)
T 3aw8_A 219 SEALQKKAEAYALRAMEALDYVGVLALEFFQVG--EELLFNEMAPRVHNSGHW 269 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--TEEEEEEEESSCCGGGTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC--CcEEEEEEeCCcCCccce
Confidence 789999999999999999999999999999983 789999999999998765
No 86
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=1.4e-22 Score=234.04 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=167.2
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++. .|+.. +...|+.+|+|++|++..++.+++||..+|++ |+++|||+|++..+.+.+
T Consensus 60 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~----- 126 (417)
T 2ip4_A 60 EGIDLTLVG-----PEAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGL---MERYGIPTARYRVFREPL----- 126 (417)
T ss_dssp HTCCEEEEC-----SSHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHH---HHHTCCCBCCEEEESSHH-----
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHH---HHHcCCCCCCeeeeCCHH-----
Confidence 568999985 46553 55678899999999999999999999999999 999999999998876532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+.. ..+..+|||+|
T Consensus 127 ---~~~~~~~~~-~~P~vvKp~~~~gg~Gv~~v~~~~el~~---~~~~~~~~-----------------~~~~~~lvEe~ 182 (417)
T 2ip4_A 127 ---EALAYLEEV-GVPVVVKDSGLAAGKGVTVAFDLHQAKQ---AVANILNR-----------------AEGGEVVVEEY 182 (417)
T ss_dssp ---HHHHHHHHH-CSSEEEECTTSCSSTTCEEESCHHHHHH---HHHHHTTS-----------------SSCCCEEEEEC
T ss_pred ---HHHHHHHHc-CCCEEEEECCCCCCCCEEEeCCHHHHHH---HHHHHHhh-----------------ccCCeEEEEEC
Confidence 233445677 6999999999999999999999998875 45544311 01368999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+ |..+...+..+. ....++++.+++.+....+.|++ +
T Consensus 183 i~g~-------------------------E~sv~~~~~-G~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~p~~---l 231 (417)
T 2ip4_A 183 LEGE-------------------------EATVLALTD-GETILPLLPSQD--HKRLLDGDQGPMTGGMGAVAPYP---M 231 (417)
T ss_dssp CCSC-------------------------EEEEEEEES-SSCEEECCCBEE--CCEEETTTEEEECSCSEEEESCC---C
T ss_pred ccCc-------------------------EEEEEEEEe-CCEEEEcchhee--chhhccCCCCCcCCCCeeeeCCC---C
Confidence 9997 999999974 443323332221 22355666666666666778876 5
Q ss_pred CHHHHHHH-HHHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 870 STEALDKC-KQRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 870 ~~~~~~~i-~~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
++++.+++ ++.+++++++| ++.|++++||+++. +| +||+|||++||.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~ 285 (417)
T 2ip4_A 232 DEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG-PKVLEFNARFGDP 285 (417)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC-EEEEEEESSCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC-eEEEEEecCCCCc
Confidence 88888888 66787777775 67899999999985 67 9999999999954
No 87
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.90 E-value=2.1e-22 Score=234.93 Aligned_cols=221 Identities=18% Similarity=0.246 Sum_probs=167.7
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCch
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPI 710 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~~ 710 (953)
..+|+|++. +|...|++.++.+|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++. .+.+.
T Consensus 72 ~~~d~v~~~-~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~~------- 140 (451)
T 1ulz_A 72 VGADAIHPG-YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEV---MKKAGVPVVPGSDGVLKSL------- 140 (451)
T ss_dssp TTCCEEECC-SSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHH---HHHTTCCBCCBCSSSCCCH-------
T ss_pred cCCCEEEEC-CCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcccccCCH-------
Confidence 568998876 67778999999999999999999999999999999999999 999999999986 44432
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
+.+.++.+++ +||+||||..+++|.||.+|++.+|+..+ ++.++... .... .+..++||+||
T Consensus 141 -~~~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~---~~~~~~~~-----~~~~--------~~~~~lvEe~i 202 (451)
T 1ulz_A 141 -EEAKALAREI-GYPVLLKATAGGGGRGIRICRNEEELVKN---YEQASREA-----EKAF--------GRGDLLLEKFI 202 (451)
T ss_dssp -HHHHHHHHHH-CSSEEEEECSSSSCCSCEEESSHHHHHHH---HHHHHHHH-----HHTT--------SCCCEEEEECC
T ss_pred -HHHHHHHHHc-CCCEEEEECCCCCCccEEEeCCHHHHHHH---HHHHHHHH-----HHhc--------CCCeEEEEEcc
Confidence 1234455677 69999999999999999999999998864 44433210 0000 14689999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
+|. +|++|.++++. |....+. . +. +++..++. ......|++ .+
T Consensus 203 ~g~------------------------~e~~v~v~~~~~G~~~~~~-~-~~------~~~~~~~~--~~~~~~P~~--~l 246 (451)
T 1ulz_A 203 ENP------------------------KHIEYQVLGDKHGNVIHLG-E-RD------CSIQRRNQ--KLVEIAPSL--IL 246 (451)
T ss_dssp CSC------------------------EEEEEEEEECTTSCEEEEE-E-EE------EEEEETTE--EEEEEESCS--SC
T ss_pred cCC------------------------eEEEEEEEEcCCCCEEEEe-e-ee------cccccccc--cceeECCcc--cC
Confidence 984 49999999874 4433221 1 10 11111111 112345664 26
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++..+++++.+.+++++||+.|++++||+++. +|++||+|||++|+-+
T Consensus 247 ~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 247 TPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLYFIEMNTRIQVE 295 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEECSCCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCCEEEEEeeCCCCcc
Confidence 889999999999999999999999999999985 6899999999999754
No 88
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.90 E-value=1.8e-22 Score=235.40 Aligned_cols=223 Identities=16% Similarity=0.218 Sum_probs=168.3
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~ 709 (953)
+..+|+|++. +|...|++.++.+|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++. .+.+.
T Consensus 71 ~~~~d~v~~~-~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~~------ 140 (451)
T 2vpq_A 71 STGCDGVHPG-YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAE---MIKANVPVVPGSDGLMKDV------ 140 (451)
T ss_dssp HTTCSEEECC-SSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHH---HHHTTCCBCSBCSSCBSCH------
T ss_pred HcCCCEEEEC-CCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHH---HHHcCCCcCCCcccCcCCH------
Confidence 3568999887 68888999999999999999999999999999999999999 999999999976 44432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++.+++ +||+||||..+++|.||.+|++.+|+.++ ++.++... .... .+..++||+|
T Consensus 141 --~~~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~---~~~~~~~~-----~~~~--------~~~~~lvEe~ 201 (451)
T 2vpq_A 141 --SEAKKIAKKI-GYPVIIKATAGGGGKGIRVARDEKELETG---FRMTEQEA-----QTAF--------GNGGLYMEKF 201 (451)
T ss_dssp --HHHHHHHHHH-CSSEEEEETTCCTTCSEEEESSHHHHHHH---HHHHHHHH-----HHHH--------SCCCEEEEEC
T ss_pred --HHHHHHHHhc-CCcEEEEECCCCCCCCEEEeCCHHHHHHH---HHHHHHHH-----Hhhc--------CCCcEEEEEe
Confidence 1234455678 69999999999999999999999998864 43332210 0000 0467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|++|.++++. |....+ +.... .+...++ ......|++ .
T Consensus 202 i~g~------------------------~e~~v~v~~~~~G~~~~~-~~~~~-------~~~~~~~--~~~~~~P~~--~ 245 (451)
T 2vpq_A 202 IENF------------------------RHIEIQIVGDSYGNVIHL-GERDC-------TIQRRMQ--KLVEEAPSP--I 245 (451)
T ss_dssp CCSE------------------------EEEEEEEEECTTSCEEEE-EEEEE-------EEEETTE--EEEEEESCT--T
T ss_pred cCCC------------------------eEEEEEEEEcCCCCEEEE-ecccc-------chhcccc--ceEEEcCCC--C
Confidence 9994 49999999875 443222 21100 0111111 112345765 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|++++||++++++|++||+|||++|+-+
T Consensus 246 l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 246 LDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVE 296 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCCc
Confidence 688999999999999999999999999999998336899999999999754
No 89
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.90 E-value=1.3e-22 Score=234.71 Aligned_cols=223 Identities=19% Similarity=0.244 Sum_probs=168.7
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+.. +...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 61 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 127 (424)
T 2yw2_A 61 EGVDFTIVG-----PEAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTF---MKKYGIPTARYEVFTDFE----- 127 (424)
T ss_dssp HTCSEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHH---HHHTTCCBCCEEEESCHH-----
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHH---HHHcCCCCCCeEEECCHH-----
Confidence 468999984 46653 55678899999999999999999999999999 999999999998876532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+.. +.+.. ....+|||+|
T Consensus 128 ---~~~~~~~~~-~~PvvvKp~~g~gg~Gv~~v~~~~el~~---~~~~~~~~---~~~g~----------~~~~~lvEe~ 187 (424)
T 2yw2_A 128 ---KAKEYVEKV-GAPIVVKADGLAAGKGAVVCETVEKAIE---TLDRFLNK---KIFGK----------SSERVVIEEF 187 (424)
T ss_dssp ---HHHHHHHHH-CSSEEEEESSCCTTCSEEEESSHHHHHH---HHHHHHTS---CTTGG----------GGSSEEEEEC
T ss_pred ---HHHHHHHHc-CCcEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHhh---hhccC----------CCCeEEEEEC
Confidence 233455677 6999999999999999999999998875 45554431 00000 0357999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+ |..+...+..+ ....+++++.+++.+.+..+.|++. +
T Consensus 188 i~g~-------------------------E~sv~~~~~-G~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~p~~~--l 237 (424)
T 2yw2_A 188 LEGE-------------------------EASYIVMIN-GDRYVPLPTSQ--DHKRLLDEDKGPNTGGMGAYSPTPV--I 237 (424)
T ss_dssp CCSE-------------------------EEEEEEEEE-TTEEEECCCBE--ECCEEETTTEEEECSCSEEEESCTT--S
T ss_pred CCCc-------------------------EEEEEEEEc-CCEEEeeccee--eccccccCCCCCCCCCCeeECCCcc--C
Confidence 9997 999998874 33332222221 1234666666776666677788762 5
Q ss_pred CHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 870 STEALDKCK-QRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 870 ~~~~~~~i~-~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++.++++ +.+.+++++| ++.|++++||+++. +| +||+|||++||.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~~ 292 (424)
T 2yw2_A 238 NEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITK-EG-PKVLEFNVRLGDPE 292 (424)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-cEEEEEecCCCCcH
Confidence 788888884 6788888776 67899999999995 57 99999999999553
No 90
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.90 E-value=1.8e-23 Score=231.30 Aligned_cols=187 Identities=17% Similarity=0.165 Sum_probs=148.4
Q ss_pred hhcCCcEEEEecCCCCCCccHHHHHHHHcCCC--EeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCC
Q 002207 631 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVP--YTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKT 708 (953)
Q Consensus 631 ~~~~~dvvf~~~hG~~GEdg~iq~llE~~gIP--y~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~ 708 (953)
....+|++|++ ..||||.+|++++.++.+ |+|+++.++++|+||..++++ |++ |||+|++..
T Consensus 66 ~~~~~D~~~~i---~~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~---l~~-Gip~p~~~~--------- 129 (305)
T 3df7_A 66 YLEKSDAFLII---APEDDFLLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKK---LRG-EVQVPQTSL--------- 129 (305)
T ss_dssp HHTTCSEEEEE---CCCGGGHHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHH---HTT-TSCCCCEES---------
T ss_pred HHHhcCEEEEE---ccCCcHHHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHH---HHh-CCCCCCEec---------
Confidence 34578999999 778999999999998777 999999999999999999999 899 999999863
Q ss_pred chhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 709 PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 709 ~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
..+ +||+||||.++++|.||.++++ . +..+|||+
T Consensus 130 ----------~~~-~~P~vvKP~~g~gs~Gv~~v~~----------------~-------------------~~~~lvEe 163 (305)
T 3df7_A 130 ----------RPL-DCKFIIKPRTACAGEGIGFSDE----------------V-------------------PDGHIAQE 163 (305)
T ss_dssp ----------SCC-SSSEEEEESSCC----CBCCSS----------------C-------------------CTTEEEEE
T ss_pred ----------ccC-CCCEEEEeCCCCCCCCEEEEec----------------C-------------------CCCEEEEe
Confidence 134 6999999999999999999986 1 46899999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
||+|+ |++|.+++++ ... +...... +.++ .+|.+ ..+|+.
T Consensus 164 ~I~G~-------------------------e~sv~v~~g~-~~~---~~~~~~~---~~~~-~~~~g----~~~p~~--- 203 (305)
T 3df7_A 164 FIEGI-------------------------NLSVSLAVGE-DVK---CLSVNEQ---IINN-FRYAG----AVVPAR--- 203 (305)
T ss_dssp CCCSE-------------------------EEEEEEEESS-SEE---EEEEEEE---EEET-TEEEE----EEESCC---
T ss_pred ccCCc-------------------------EEEEEEEeCC-eEE---EEEEeeE---eccC-ceecc----ccccCC---
Confidence 99997 9999999742 221 1111111 1111 23332 256776
Q ss_pred CCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 869 MSTEALDKCKQRIELIANAL-QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aL-g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
++++..+++++.+.+++++| |+.|+++|||+++ |++||+|||++||.+..+
T Consensus 204 l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~~~~viEiNpR~~~~~~~ 255 (305)
T 3df7_A 204 ISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS---DQPYVIEINARLTTPVVA 255 (305)
T ss_dssp CCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES---SSEEEEEEESSCCGGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC---CCEEEEEEcCCCCCCHHH
Confidence 57899999999999999999 9999999999994 679999999999998654
No 91
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.90 E-value=2e-23 Score=226.79 Aligned_cols=209 Identities=18% Similarity=0.181 Sum_probs=146.7
Q ss_pred CCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhH
Q 002207 634 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 713 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~ 713 (953)
.+|+++...||.+ +++.++++|+.+|+|++++ +.++.+|+||..++++ |+++|||+|++..+.+.+ .
T Consensus 48 ~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~-~~~~~~~~dK~~~~~~---l~~~gi~~p~~~~~~~~~--------~ 114 (280)
T 1uc8_A 48 GVTVALERCVSQS-RGLAAARYLTALGIPVVNR-PEVIEACGDKWATSVA---LAKAGLPQPKTALATDRE--------E 114 (280)
T ss_dssp TCCEEEECCSSHH-HHHHHHHHHHHTTCCEESC-HHHHHHHHBHHHHHHH---HHHTTCCCCCEEEESSHH--------H
T ss_pred CCCEEEECCccch-hhHHHHHHHHHCCCceeCC-HHHHHHhCCHHHHHHH---HHHcCcCCCCeEeeCCHH--------H
Confidence 3686666666644 7789999999999999975 8999999999999999 899999999999886532 2
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHH--HhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC--LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a--~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
+.++.+++ +||+||||..+++|.||.++++.+++..+ ++.. +.. .....+|||+||+
T Consensus 115 ~~~~~~~~-~~p~vvKp~~g~~~~gv~~v~~~~el~~~---~~~~~~~~~-----------------~~~~~~lvqe~i~ 173 (280)
T 1uc8_A 115 ALRLMEAF-GYPVVLKPVIGSWGRLLAXXXXXXXXXXX---XXXKEVLGG-----------------FQHQLFYIQEYVE 173 (280)
T ss_dssp HHHHHHHH-CSSEEEECSBCCBCSHHHHHHHHHC---------------C-----------------TTTTCEEEEECCC
T ss_pred HHHHHHHh-CCCEEEEECCCCCcccceecccccccchh---hhhHhhhcc-----------------cCCCcEEEEeccC
Confidence 34455677 69999999999999999999998888753 3322 111 0146899999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
|.+ .|+++.++++. . .+.+... . .+|..++..+.. ..|.+ +++
T Consensus 174 ~~~-----------------------~e~~v~v~~~~--~---~~~~~~~-~---~~~~~~~~~g~~--~~p~~---l~~ 216 (280)
T 1uc8_A 174 KPG-----------------------RDIRVFVVGER--A---IAAIYRR-S---AHWITNTARGGQ--AENCP---LTE 216 (280)
T ss_dssp CSS-----------------------CCEEEEEETTE--E---EEEEEC--------------------CEECC---CCH
T ss_pred CCC-----------------------ceEEEEEECCE--E---EEEEEEe-c---CCccccccCCcc--ccCCC---CCH
Confidence 731 38888888542 2 1222111 1 123333433332 24554 343
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++.+.+++++||+ |++++||+++. +| +||+|||++||++.
T Consensus 217 ----~~~~~~~~~~~~lg~-g~~~vD~~~~~-~g-~~~iEiN~r~g~~~ 258 (280)
T 1uc8_A 217 ----EVARLSVKAAEAVGG-GVVAVDLFESE-RG-LLVNEVNHTMEFKN 258 (280)
T ss_dssp ----HHHHHHHHHHHHTTC-SEEEEEEEEET-TE-EEEEEEETTCCCTT
T ss_pred ----HHHHHHHHHHHHhCC-CeEEEEEEEeC-CC-eEEEEEeCCCCccc
Confidence 789999999999999 99999999985 45 99999999999986
No 92
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.90 E-value=3.3e-22 Score=232.04 Aligned_cols=215 Identities=19% Similarity=0.149 Sum_probs=152.3
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHH-HHCCCCccCeEEEeCccccCCchh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l-~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
+.+|+|++..... -. .+...|+.+|+ ++|++..++.+|+||..+|++ | +++|||+|++..+.+.+
T Consensus 81 ~~~d~V~~~~e~~-~~--~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~---l~~~~gip~p~~~~~~~~~------- 146 (433)
T 2dwc_A 81 EKPDAIIPEIEAI-NL--DALFEFEKDGY-FVVPNARATWIAMHRERLRET---LVKEAKVPTSRYMYATTLD------- 146 (433)
T ss_dssp HCCSEEEECSSCS-CH--HHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHH---HHHTSCCCCCCEEEESSHH-------
T ss_pred cCCCEEEECcccC-CH--HHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHH---HHHhcCCCCCCeeEeCCHH-------
Confidence 5689999976211 11 23356889999 679999999999999999998 8 89999999999876532
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.++... + .....+|||+||+
T Consensus 147 -~~~~~~~~~-g~P~vvKp~~g~gg~Gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~lvEe~i~ 206 (433)
T 2dwc_A 147 -ELYEACEKI-GYPCHTKAIMSSSGKGSYFVKGPEDIPK---AWEEAKTKA------R---------GSAEKIIVEEHID 206 (433)
T ss_dssp -HHHHHHHHH-CSSEEEEECCC------EEECSGGGHHH---HHHC------------------------CCEEEEECCC
T ss_pred -HHHHHHHhc-CCCEEEEECCCcCCCCeEEECCHHHHHH---HHHHHHhhc------c---------cCCCCEEEEccCC
Confidence 234455678 6999999999999999999999999886 444332210 0 0146799999999
Q ss_pred -CcccccccccccccchhhhhcCCCceeEEEEEEEcC---CCCc-eeeCceEEEecCCccccccccccCCCceeEcCCCC
Q 002207 792 -TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK---CGSM-HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 866 (953)
Q Consensus 792 -G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~---~~~~-~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~ 866 (953)
|. |++|.++.+ +|.. ..+.+....... .+++.. .+.|++
T Consensus 207 ~g~-------------------------E~sv~~~~~~~~~G~~~~~~~~~~~~~~~--~~~~~~--------~~~p~~- 250 (433)
T 2dwc_A 207 FDV-------------------------EVTELAVRHFDENGEIVTTFPKPVGHYQI--DGDYHA--------SWQPAE- 250 (433)
T ss_dssp CSE-------------------------EEEECCEEEECTTSCEEEEEECCEEEEES--SSSEEE--------EEESCC-
T ss_pred CCe-------------------------eEEEEEEecccCCCCEeEEEecccceEEE--cCEEEE--------EEcCCC-
Confidence 65 999988875 4442 223333322211 222222 245765
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCC
Q 002207 867 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 921 (953)
Q Consensus 867 ~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~ 921 (953)
++++..+++++.+.+++++||+.|++++||+++. + ++||+|||++||.+..
T Consensus 251 --l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~-~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 251 --ISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKG-D-KVWANEVSPRPHDTGM 301 (433)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEET-T-EEEEEEEESSCCGGGG
T ss_pred --CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-C-cEEEEEEeCCcCCCcc
Confidence 6889999999999999999999999999999984 3 8999999999997643
No 93
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.90 E-value=3.9e-22 Score=228.15 Aligned_cols=210 Identities=19% Similarity=0.224 Sum_probs=161.0
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+..|+|.+-+ ...+-.+...|+..|+ +|+++.+..+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 74 ~~~dvI~~~~---e~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~-------- 137 (389)
T 3q2o_A 74 EISDVVTYEF---ENIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNA---IEKAGLPVATYRLVQNQE-------- 137 (389)
T ss_dssp HTCSEEEESC---CCCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHH---HHHTTCCCCCEEEESSHH--------
T ss_pred HhCCEeeecc---ccccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHH---HHHCCCCCCCeEEECCHH--------
Confidence 3468873322 1223334455666776 79999999999999999999 999999999999887633
Q ss_pred HHHHHHhhcCCCcEEEecCCCCC-CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 713 IWHELTSKLQCKTLCVKPARDGC-STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gs-S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.++.+++ +||+||||+.+++ |.|+.++++.+|+..+ ++... +..+|||+||+
T Consensus 138 ~~~~~~~~~-g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~---~~~~~---------------------~~~~lvEe~i~ 192 (389)
T 3q2o_A 138 QLTEAIAEL-SYPSVLKTTTGGYDGKGQVVLRSEADVDEA---RKLAN---------------------AAECILEKWVP 192 (389)
T ss_dssp HHHHHHHHH-CSSEEEEESSCCSSSCCEEEESSGGGHHHH---HHHHH---------------------HSCEEEEECCC
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCCCCeEEECCHHHHHHH---HHhcC---------------------CCCEEEEeccc
Confidence 234455678 6999999999976 6999999999999864 43321 35799999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCC
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 870 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~ 870 (953)
|. +|++|.++++. |... ..|..+.....+++ ...+.|++ ++
T Consensus 193 g~------------------------~E~~v~~~~~~~G~~~-~~~~~e~~~~~g~~----------~~~~~p~~---l~ 234 (389)
T 3q2o_A 193 FE------------------------KEVSVIVIRSVSGETK-VFPVAENIHVNNIL----------HESIVPAR---IT 234 (389)
T ss_dssp CS------------------------EEEEEEEEECTTCCEE-ECCCEEEEEETTEE----------EEEEESCS---SC
T ss_pred Cc------------------------eEEEEEEEEcCCCCEE-EecCeeeEEcCCce----------EEEECCCC---CC
Confidence 84 49999999864 4433 34444433333332 23356765 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 871 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
+++.+++++.+.+++++||+.|+++|||+++. +|++||||||++||.|...
T Consensus 235 ~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg~~~viEiNpR~~~s~~~ 285 (389)
T 3q2o_A 235 EELSQKAIAYAKVLADELELVGTLAVEMFATA-DGEIYINELAPRPHNSGHY 285 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSCEEEEEEESSCCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCCEEEEEeeCCCCCchhH
Confidence 99999999999999999999999999999985 6899999999999988654
No 94
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.90 E-value=2.5e-22 Score=230.69 Aligned_cols=214 Identities=19% Similarity=0.139 Sum_probs=161.0
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
..+|.|++. |...+...+..+++.+|+| |+++.++.+|+||..++++ |+++|||+|++..+.+.+
T Consensus 70 ~~~d~v~~~--~~~~~~~~~a~~~~~~gl~--g~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~-------- 134 (403)
T 4dim_A 70 LNLDGAATC--CLDTGIVSLARICDKENLV--GLNEEAAIMCGDKYKMKEA---FKKYNVNTARHFVVRNEN-------- 134 (403)
T ss_dssp SCCSEEECC--SCSTTHHHHHHHHHHHTCS--SCCHHHHHHHHCHHHHHHH---HHHHTCCCCCEECCCSHH--------
T ss_pred cCCCEEEeC--CcchhHHHHHHHHHHcCcC--CCCHHHHHHHhCHHHHHHH---HHHcCCCCCCEEEeCCHH--------
Confidence 457888874 5555555788999999997 9999999999999999999 899999999998765432
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+|+.. +++.+.... ....+|||+||+|
T Consensus 135 ~~~~~~~~~-g~P~vvKp~~g~gg~Gv~~v~~~~el~~---~~~~~~~~~-----------------~~~~~lvEe~i~g 193 (403)
T 4dim_A 135 ELKNALENL-KLPVIVKATDLQGSKGIYIAKKEEEAID---GFNETMNLT-----------------KRDYCIVEEFIEG 193 (403)
T ss_dssp HHHHHHHTS-CSSEEEECSCC-----CEEESSHHHHHH---HHHHHHHHC-----------------SSSCCEEEECCCS
T ss_pred HHHHHHhcC-CCCEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHhcC-----------------cCCcEEEEEccCC
Confidence 244556788 6999999999999999999999999886 555554431 1467999999999
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHH
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 872 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~ 872 (953)
. |+++.++..+|....+.+... +.+..++ .....+..|++ ++++
T Consensus 194 ~-------------------------e~sv~~~~~~g~~~~~~~~~~-------~~~~~~~-~~~~~~~~p~~---l~~~ 237 (403)
T 4dim_A 194 Y-------------------------EFGAQAFVYKNDVLFVMPHGD-------ETYMSHT-AVPVGHYVPLD---VKDD 237 (403)
T ss_dssp E-------------------------EEEEEEEEETTEEEEEEEEEE-------EEEESSS-EEEEEEEESCC---SCHH
T ss_pred c-------------------------EEEEEEEEECCEEEEEEEecc-------eeccCCC-CcceeEEeCCC---CCHH
Confidence 7 899988876555443322111 1222222 11224456766 6899
Q ss_pred HHHHHHHHHHHHHHHcCCcc-eEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 873 ALDKCKQRIELIANALQLEG-FSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 873 ~~~~i~~~a~~~~~aLg~~G-~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+.+++++.+.+++++||+.| ++++||+++ +|++||+|||++||-+.
T Consensus 238 ~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~--~~~~~~iEiN~R~~~~~ 284 (403)
T 4dim_A 238 IIEKTKTEVKKAIKALGLNNCAVNVDMILK--DNEVYIIELTGRVGANC 284 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEEEEE--TTEEEEEEEESSCCSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEEE--CCcEEEEEEcCCCCCCc
Confidence 99999999999999999998 899999998 58999999999999654
No 95
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.89 E-value=2.6e-22 Score=224.06 Aligned_cols=242 Identities=14% Similarity=0.049 Sum_probs=158.1
Q ss_pred CcEEEEecCCCCCCccHHH--HHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 635 QATVFIAVHGGIGEDGTLQ--SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 635 ~dvvf~~~hG~~GEdg~iq--~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+|+|++ + +|+..++ ..||.+|+|++++ ..++++|+||..++++ |+++|||+|++ +.+.
T Consensus 63 ~d~i~~--~---~e~~~~~~~~~le~~g~~~~~~-~~~~~~~~dK~~~~~~---l~~~gip~p~~--~~~~--------- 122 (334)
T 2r85_A 63 NAVVVP--T---GSFVAHLGIELVENMKVPYFGN-KRVLRWESDRNLERKW---LKKAGIRVPEV--YEDP--------- 122 (334)
T ss_dssp TEEECC--C---TTHHHHHCHHHHHTCCSCBBSC-TTHHHHHHSHHHHHHH---HHHTTCCCCCB--CSCG---------
T ss_pred CCEEEE--C---cchhhhhHHHHHHHcCCCccCC-HHHHHHHHhHHHHHHH---HHHcCCCCCCc--cCCh---------
Confidence 477653 2 3444333 3458999998865 5889999999999998 99999999998 3221
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccC
Q 002207 713 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 792 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G 792 (953)
+++ .||+||||..+++|.||.+|++.+++.. +++..+... .+ .....+|||+||+|
T Consensus 123 ------~~l-~~P~vvKP~~g~~s~Gv~~v~~~~el~~---~~~~~~~~~---~~-----------~~~~~~lvee~i~G 178 (334)
T 2r85_A 123 ------DDI-EKPVIVKPHGAKGGKGYFLAKDPEDFWR---KAEKFLGIK---RK-----------EDLKNIQIQEYVLG 178 (334)
T ss_dssp ------GGC-CSCEEEEECC----TTCEEESSHHHHHH---HHHHHHCCC---SG-----------GGCCSEEEEECCCC
T ss_pred ------HHc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHhhc---cc-----------CCCCcEEEEeccCC
Confidence 235 5999999999999999999999998875 455443210 00 01367999999999
Q ss_pred cccccccccccccchhhhhcCCCceeEEEEEEEcCC-CC-ceeeCceEEE-ecCCccccc--cccccC--CCceeEc---
Q 002207 793 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GS-MHSLMPSVTV-KESGDILSL--EEKFQG--GTGINLT--- 862 (953)
Q Consensus 793 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~-~~~~~p~~~i-~~~~~~~d~--~~Ky~~--g~~~~~~--- 862 (953)
. |+++.++.+. +. ...+....++ ....+++++ +.++.. +......
T Consensus 179 ~-------------------------e~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 233 (334)
T 2r85_A 179 V-------------------------PVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNI 233 (334)
T ss_dssp E-------------------------EEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCCCCEEEEEEE
T ss_pred c-------------------------eeEEEEeecCcCceeeeeeeccEEEeccCcccccccccccccccCCceeeeCCC
Confidence 7 6665443321 11 1111111111 112233321 112211 1112223
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCC-CCCc----hHHHHHHhcC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGM-TPST----VLIHQALSEQ 932 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGl-t~~S----~l~~~a~~~~ 932 (953)
|+. +++++.+++++++.+++++| ++.|++++||+++. +|++||+|||++||. ++.+ .++++... .
T Consensus 234 p~~---l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g~~~viEiN~R~g~~~~~~~~g~~~~~l~~~-~ 308 (334)
T 2r85_A 234 PIV---LRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DLEFVVFEISARIVAGTNIFVNGSPYTWLRYD-R 308 (334)
T ss_dssp ECC---CCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TSCEEEEEEECSCCGGGGGGTTCCTTGGGTCS-S
T ss_pred Ccc---cCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CCCEEEEEEeCCcCCCceeeecCccchheeec-C
Confidence 665 57788899999999999999 89999999999985 689999999999999 4443 34444322 2
Q ss_pred CCCCHHHHHHHHHHHHhhc
Q 002207 933 PPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 933 ~~~yp~~l~~~li~~a~~r 951 (953)
+ +...+.+..+|++|++|
T Consensus 309 ~-~~~~~~~~~~i~~~~~~ 326 (334)
T 2r85_A 309 P-VSTGRRIAMEIREAIEN 326 (334)
T ss_dssp C-CCHHHHHHHHHHHHHHT
T ss_pred c-ccHHHHHHHHHHHHHHh
Confidence 3 33468888999999875
No 96
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.89 E-value=3.8e-22 Score=232.55 Aligned_cols=220 Identities=16% Similarity=0.229 Sum_probs=167.2
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCch
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPI 710 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~~ 710 (953)
..+|+|++. +|...|++.++.+|+.+|+|++|+++.++.+++||..+|++ |+++|||+|++. .+.+.+
T Consensus 73 ~~~d~v~~~-~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~~~------ 142 (449)
T 2w70_A 73 TGAVAIHPG-YGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA---MKKAGVPCVPGSDGPLGDDM------ 142 (449)
T ss_dssp HTCCEEECC-SSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHH---HHHHTCCBCSBCSSCCCSCH------
T ss_pred cCCCEEEEC-CCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHH---HHHcCCCcCCCcccccCCHH------
Confidence 578998886 68888999899999999999999999999999999999999 899999999986 554322
Q ss_pred hhHH-HHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 711 VDIW-HELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 711 ~~~~-~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+ .++.+++ +||+||||..+++|.||.+|++.+|+.++ ++.++... .... .+..++||+|
T Consensus 143 --~~~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~---~~~~~~~~-----~~~~--------~~~~~lvEe~ 203 (449)
T 2w70_A 143 --DKNRAIAKRI-GYPVIIKASGGGGGRGMRVVRGDAELAQS---ISMTRAEA-----KAAF--------SNDMVYMEKY 203 (449)
T ss_dssp --HHHHHHHHHH-CSSEEEEETTCCTTTTCEEECSHHHHHHH---HHHHHHHH-----HHHH--------SCCCEEEEEC
T ss_pred --HHHHHHHHHh-CCcEEEEECCCCCCCCEEEeCCHHHHHHH---HHHHHHHH-----Hhhc--------CCCcEEEEec
Confidence 23 3445677 69999999999999999999999988864 44333210 0000 0467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|++|.++++. |....+. . + .+++..++. ......|++ .
T Consensus 204 i~g~------------------------~e~~v~~~~~~~G~~~~~~-~-~------~~~~~~~~~--~~~~~~p~~--~ 247 (449)
T 2w70_A 204 LENP------------------------RHVEIQVLADGQGNAIYLA-E-R------DCSMQRRHQ--KVVEEAPAP--G 247 (449)
T ss_dssp CSSC------------------------EEEEEEEEECTTSCEEEEE-E-E------EEEEEETTE--EEEEEESCT--T
T ss_pred cCCC------------------------eEEEEEEEEcCCCCEEEEe-c-e------ecccccCCc--ceeeeCCcc--c
Confidence 9984 49999999864 4433221 1 1 011111111 112345664 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|++++||+++. |++||+|||++|+-+
T Consensus 248 l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~~~~viEiN~R~~~~ 296 (449)
T 2w70_A 248 ITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN--GEFYFIEMNTRIQVE 296 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--TEEEEEEEECSCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC--CCEEEEEEECCCCcc
Confidence 6889999999999999999999999999999983 789999999999754
No 97
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.89 E-value=4.9e-23 Score=227.65 Aligned_cols=294 Identities=15% Similarity=0.124 Sum_probs=190.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecc--c---cc-ccCCCCCccccccccccccC
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISS--A---QV-YSNTPADFDFKLESLAQGFG 151 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~ 151 (953)
|||+||+||.|.| ++|..|++.++++|++.||+|+.++.+. .+..... + .. ....... .+.+....
T Consensus 2 m~i~il~~~~~~~-~~~~~s~~~l~~a~~~~G~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---- 73 (316)
T 1gsa_A 2 IKLGIVMDPIANI-NIKKDSSFAMLLEAQRRGYELHYMEMGD--LYLINGEARAHTRTLNVKQNYEE-WFSFVGEQ---- 73 (316)
T ss_dssp CEEEEECSCGGGC-CTTTCHHHHHHHHHHHTTCEEEEECGGG--EEEETTEEEEEEEEEEECSCSSC-CEEEEEEE----
T ss_pred ceEEEEeCcHHhC-CcCCChHHHHHHHHHHCCCEEEEEchhH--eEEECCeEEEEEeeeEeccCccc-ceeccCcc----
Confidence 5999999999876 6999999999999999999998775432 1111000 0 00 0000000 00000000
Q ss_pred cchhHHHhhccCcCEEEEcCCCCCCC---ch-HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEec
Q 002207 152 SLSEFAEHLAANVDIVFPTIHGRFGE---DG-GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQ 227 (953)
Q Consensus 152 ~~~~~~~~~~~~~D~vf~~lhG~~GE---dg-~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~ 227 (953)
. .. ..++|+||+..|+..++ ++ .+.+.|+.+|+|++ +++.++++++||+.++++|+ |+|++..+.
T Consensus 74 -~----~~-~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~~~~ 142 (316)
T 1gsa_A 74 -D----LP-LADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETLVTR 142 (316)
T ss_dssp -E----EE-GGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEEEES
T ss_pred -c----cc-cccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeEEeC
Confidence 0 00 12699999999988765 22 45667778999987 58999999999999999988 999998886
Q ss_pred CCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeC-CHHHHHHHHHHhHhcCCCCcEEEeccCCC--CeEEEE
Q 002207 228 GSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY-GVIDSLKKAKGIILEGIDDRVVVELFLEG--GSEFTA 304 (953)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~-~~~el~~~a~~~~~~~~~~~vlVEefI~G--g~E~tv 304 (953)
+.+ ++.++++. .+ |+||||..+++|.||.+++ +.+++...... +.......+|||+||+| +.|+++
T Consensus 143 ~~~----~~~~~~~~-----~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~-~~~~~~~~~lvqe~i~~~~~~~~~v 211 (316)
T 1gsa_A 143 NKA----QLKAFWEK-----HS-DIILKPLDGMGGASIFRVKEGDPNLGVIAET-LTEHGTRYCMAQNYLPAIKDGDKRV 211 (316)
T ss_dssp CHH----HHHHHHHH-----HS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHH-HTTTTTSCEEEEECCGGGGGCEEEE
T ss_pred CHH----HHHHHHHH-----cC-CEEEEECCCCCcccEEEecCChHHHHHHHHH-HHhcCCceEEEecccCCCCCCCEEE
Confidence 533 23333322 34 9999999999999999998 77776544433 22112368999999996 478888
Q ss_pred EEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHH---h
Q 002207 305 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQR---L 381 (953)
Q Consensus 305 ~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~a---L 381 (953)
.+++ +. .+.+ + +.... .. -+|..++..++ .. .|..++++. +++|.+++++ +
T Consensus 212 ~~~~----g~--~~~~-~--~~r~~--------~~--~~~~~~~~~gg-~~--~~~~~~~~~----~~~a~~~~~~l~~~ 265 (316)
T 1gsa_A 212 LVVD----GE--PVPY-C--LARIP--------QG--GETRGNLAAGG-RG--EPRPLTESD----WKIARQIGPTLKEK 265 (316)
T ss_dssp EEET----TE--ECSE-E--EEEEC--------CS--SCSCCCGGGTC-EE--EEEECCHHH----HHHHHHHHHHHHHT
T ss_pred EEEC----CE--Eeee-E--EEEeC--------CC--CCceeEEccCC-cc--ccCCCCHHH----HHHHHHHHHHHHhC
Confidence 8873 21 1111 1 11111 11 13455555544 22 355666644 4555555554 6
Q ss_pred CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCC--CCCCCcchHHHHHHHhCCCHHHHHHHHHHHHh
Q 002207 382 GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI--SGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 456 (953)
Q Consensus 382 g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~--PG~t~~S~~p~~a~~~G~s~~~ll~~li~~a~ 456 (953)
|+ ++++|||+ |. ||+|||++ ||++ ....++|+++.+++..++...+
T Consensus 266 g~-~~~~vD~~---------------------g~-~~iEvN~r~~~~~~------~~~~~~g~~~~~~~~~~~~~~~ 313 (316)
T 1gsa_A 266 GL-IFVGLDII---------------------GD-RLTEINVTSPTCIR------EIEAEFPVSITGMLMDAIEARL 313 (316)
T ss_dssp TC-CEEEEEEE---------------------TT-EEEEEECSSCCCHH------HHHHHSSCCHHHHHHHHHHHHT
T ss_pred CC-cEEEEEec---------------------CC-EEEEEcCCCCcchH------HHHHhhCcCHHHHHHHHHHHHh
Confidence 87 69999962 44 89999995 4643 2346789999999888876654
No 98
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.89 E-value=3.5e-22 Score=227.64 Aligned_cols=218 Identities=14% Similarity=0.175 Sum_probs=160.6
Q ss_pred CCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCch
Q 002207 634 NQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 710 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~ 710 (953)
.+|+|.+-+ |+- .+..+.+.. .+++++.++++|+||..+|++ |+++|||+|++..+.+.+
T Consensus 73 ~~dvi~~~~-----E~~~~~~l~~l~~~~---~v~p~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~------ 135 (377)
T 3orq_A 73 KCDVITYEF-----ENISAQQLKLLCEKY---NIPQGYQAIQLLQDRLTEKET---LKSAGTKVVPFISVKEST------ 135 (377)
T ss_dssp HCSEEEESS-----TTSCHHHHHHHHHHS---CCTTTTHHHHHHHSHHHHHHH---HHHTTCCBCCEEEECSST------
T ss_pred hCCcceecc-----cccCHHHHHHHhhhc---CCCCCHHHHHHhcCHHHHHHH---HHHCCCCCCCeEEECCHH------
Confidence 478874433 332 344444443 457899999999999999999 899999999999887643
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..++ +|.|+.++++.+|+.+ +++.+. ...+|||+|
T Consensus 136 --~~~~~~~~~-g~P~vvKp~~gg~~g~Gv~~v~~~~el~~---a~~~~~---------------------~~~~ivEe~ 188 (377)
T 3orq_A 136 --DIDKAIETL-GYPFIVKTRFGGYDGKGQVLINNEKDLQE---GFKLIE---------------------TSECVAEKY 188 (377)
T ss_dssp --HHHHHHHHT-CSSEEEEESSSCCTTTTEEEECSTTSHHH---HHHHHT---------------------TSCEEEEEC
T ss_pred --HHHHHHHHc-CCCEEEEeCCCCCCCCCeEEECCHHHHHH---HHHhcC---------------------CCcEEEEcc
Confidence 244556778 699999999998 7999999999999885 454432 367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcC-CCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~-~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|++|.++.+ +|... ..|..+.....+++ ...+.|+.
T Consensus 189 i~g~------------------------~E~sv~~~~~~~g~~~-~~~~~e~~~~~g~~----------~~~~~Pa~--- 230 (377)
T 3orq_A 189 LNIK------------------------KEVSLTVTRGNNNQIT-FFPLQENEHRNQIL----------FKTIVPAR--- 230 (377)
T ss_dssp CCEE------------------------EEEEEEEEECGGGCEE-ECCCEEEEEETTEE----------EEEEESCS---
T ss_pred CCCC------------------------EEEEEEEEEeCCCCEE-EECCEeEEEECCEE----------EEEECCCC---
Confidence 9994 4999999954 44433 34444432222222 23467776
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCC----CC----CCchHHHHHHhcCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG----MT----PSTVLIHQALSEQPPMY 936 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PG----lt----~~S~l~~~a~~~~~~~y 936 (953)
+++ .+++++.+.+++++||+.|+++||||++. +|++||+|||++|| +| ..|.+.+++.+..|..+
T Consensus 231 l~~--~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g~~~v~EinpR~~~sg~~t~~~~~~s~f~~~~ra~~G~pl 303 (377)
T 3orq_A 231 IDK--TAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSL 303 (377)
T ss_dssp SCC--HHHHHHHHHHHHTTSCCCEEEEEEEEEET-TCCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCC
T ss_pred CCH--HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCcEEEEEeeCCcCCCCcEeehhcCCCHHHHHHHHHcCCCC
Confidence 344 78999999999999999999999999985 68999999999999 43 45555555555344333
No 99
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.89 E-value=6.9e-22 Score=230.54 Aligned_cols=223 Identities=17% Similarity=0.178 Sum_probs=162.8
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+.+|+|++. .|+.. +...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 82 ~~~d~vi~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 148 (451)
T 2yrx_A 82 QAIDLTIVG-----PEAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKEL---MKKYGIPTADHAAFTSYE----- 148 (451)
T ss_dssp TTCSEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHH---HHHTTCCBCCEEEESCHH-----
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHH---HHHcCCCCCCeEEECCHH-----
Confidence 568999983 45553 45668899999999999999999999999999 999999999998886532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+... .+. .....+|||+|
T Consensus 149 ---~~~~~~~~~-~~PvVvKp~~~~gg~Gv~~v~~~~el~~---~~~~~~~~~---~~g----------~~~~~~lvEe~ 208 (451)
T 2yrx_A 149 ---EAKAYIEQK-GAPIVIKADGLAAGKGVTVAQTVEEALA---AAKAALVDG---QFG----------TAGSQVVIEEY 208 (451)
T ss_dssp ---HHHHHHHHH-CSSEEEEECC----CCEEEESSHHHHHH---HHHHHHHHS---CCB----------TTBCCEEEEEC
T ss_pred ---HHHHHHHhc-CCcEEEEeCCCCCCCcEEEECCHHHHHH---HHHHHHhcc---ccC----------CCCCeEEEEEC
Confidence 234455677 6999999999999999999999998876 444443310 000 01367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+ |..+...+..+ ....+++++.++..+....+.|++. +
T Consensus 209 i~G~-------------------------E~sv~~~~d-G~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~p~~~--l 258 (451)
T 2yrx_A 209 LEGE-------------------------EFSFMAFVN-GEKVYPLAIAQ--DHKRAYDGDEGPNTGGMGAYSPVPQ--I 258 (451)
T ss_dssp CCSE-------------------------EEEEEEEEE-TTEEEECCCBE--ECCEEETTTEEEECSCSEEEESCTT--S
T ss_pred CcCc-------------------------EEEEEEEEc-CCEEEEeeeEE--eccccccCCCCCCCCCCeEEccCCC--C
Confidence 9997 999999874 33322222211 1234566666666666667788752 5
Q ss_pred CHHHHHHH-HHHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 870 STEALDKC-KQRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 870 ~~~~~~~i-~~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++.+++ ++++++++++| ++.|+.++||+++. +| +||+|||++||.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~g~~~ 313 (451)
T 2yrx_A 259 SDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATA-NG-PKVIEFNARFGDPE 313 (451)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-cEEEEEecCCCCcH
Confidence 78888888 66777777765 56799999999995 56 99999999999653
No 100
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.89 E-value=4.7e-22 Score=223.96 Aligned_cols=202 Identities=15% Similarity=0.111 Sum_probs=152.3
Q ss_pred CcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHH
Q 002207 635 QATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 714 (953)
Q Consensus 635 ~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~ 714 (953)
+|+|.+-+ +....+ .++ .|+..| ++||++.++++|+||..+|++ |+++|||||+|..+.+.+ .+
T Consensus 43 ~d~it~e~-e~v~~~-~l~-~l~~~~--~v~p~~~a~~~~~DK~~~k~~---l~~~GIptp~~~~v~~~~--------e~ 106 (355)
T 3eth_A 43 QSVITAEI-ERWPET-ALT-RQLARH--PAFVNRDVFPIIADRLTQKQL---FDKLHLPTAPWQLLAERS--------EW 106 (355)
T ss_dssp TSEEEESC-SCCCCC-HHH-HHHHTC--TTBTTTTHHHHHHSHHHHHHH---HHHTTCCBCCEEEECCGG--------GH
T ss_pred CCEEEECc-CCcCHH-HHH-HHHhcC--CcCCCHHHHHHhcCHHHHHHH---HHHCccCCCCEEEECCHH--------HH
Confidence 46666654 222222 444 456667 579999999999999999999 899999999999887643 23
Q ss_pred HHHHhhcCCCcEEEecCCC-CCCcceEEeCC--cccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 715 HELTSKLQCKTLCVKPARD-GCSTGVARLCC--AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 715 ~~~~~~lg~~PlvVKP~~~-gsS~GV~~v~~--~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.++.+++ +||+||||+++ ++|+|+++|++ .+|+.. + + . + .+|||+||+
T Consensus 107 ~~~~~~~-G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~---a----~-~-------------------~-~vivEe~I~ 157 (355)
T 3eth_A 107 PAVFDRL-GELAIVKRRTGGYDGRGQWRLRANETEQLPA---E----C-Y-------------------G-ECIVEQGIN 157 (355)
T ss_dssp HHHHHHH-CSEEEEEESSSCCTTTTEEEEETTCGGGSCG---G----G-T-------------------T-TEEEEECCC
T ss_pred HHHHHHc-CCCEEEEecCCCCCCCeEEEEcCCCHHHHHH---H----h-h-------------------C-CEEEEEccC
Confidence 4455678 69999999997 56799999999 888863 1 1 1 2 599999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
+. +|++|.++++........|..+.....+++++ .+.|+. +++
T Consensus 158 ~~------------------------~Eisv~v~~~~~G~~~~~p~~e~~~~~g~~~~----------~~~pa~---l~~ 200 (355)
T 3eth_A 158 FS------------------------GEVSLVGARGFDGSTVFYPLTHNLHQDGILRT----------SVAFPQ---ANA 200 (355)
T ss_dssp CS------------------------EEEEEEEEECTTSCEEECCCEEEEEETTEEEE----------EEECSS---CCH
T ss_pred CC------------------------cEEEEEEEEcCCCCEEEECCEEEEeeCCeEEE----------EECCCC---CCH
Confidence 54 49999999764333334454443322333221 245654 689
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++.+++++++.+++++||+.|+.+||||++ ++++||+||||+|+.+.
T Consensus 201 ~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~--~~~~~v~EinpR~~~sg 247 (355)
T 3eth_A 201 QQQARAEEMLSAIMQELGYVGVMAMECFVT--PQGLLINELAPRVHNSG 247 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEEEE--TTEEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHHHHHCCCeeEEEEEEEEE--CCcEEEEEeeCCCCCCc
Confidence 999999999999999999999999999998 36899999999999854
No 101
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1e-21 Score=229.83 Aligned_cols=230 Identities=18% Similarity=0.149 Sum_probs=164.5
Q ss_pred hcCCcEEEEecCCCCCCc--cHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGED--GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEd--g~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+..+|.|++ ..|+ ..++.+++.+|+| |+++.++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 100 ~~~id~Vip-----~sE~~l~~~a~~~e~~Gi~--g~~~~ai~~~~DK~~~k~~---l~~~GIpvp~~~~v~s~e----- 164 (474)
T 3vmm_A 100 MFGADAITT-----NNELFIAPMAKACERLGLR--GAGVQAAENARDKNKMRDA---FNKAGVKSIKNKRVTTLE----- 164 (474)
T ss_dssp HTTCSEEEE-----SCGGGHHHHHHHHHHTTCC--CSCHHHHHHTTCHHHHHHH---HHHTTSCCCCEEEECSHH-----
T ss_pred HcCCCEEEE-----CCcccHHHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHH---HHHcCCCCCCeEEECCHH-----
Confidence 357899999 3566 5789999999999 9999999999999999999 999999999998886532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||+.+++|.||.++++.+||.++.+.+....... . ......+++.+|||+|
T Consensus 165 ---e~~~~~~~l-g~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~-----~-----~~~a~~~~~~vlVEe~ 230 (474)
T 3vmm_A 165 ---DFRAALEEI-GTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSI-----N-----VPKAVTFEAPFIAEEF 230 (474)
T ss_dssp ---HHHHHHHHS-CSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTS-----C-----CCTTCCCSCSEEEEEC
T ss_pred ---HHHHHHHHc-CCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhc-----c-----ccccccCCCeEEEEeC
Confidence 244566788 6999999999999999999999999987433332221110 0 0000112578999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+++.+ +.++|.. .|+++..+..++....+. ..+...... + .......|++ +
T Consensus 231 I~G~e~~~-----------~q~~~~~--~e~sv~~v~~dg~~~~v~-i~~~~~~~~-------~--~~~~~~~Pa~---l 284 (474)
T 3vmm_A 231 LQGEYGDW-----------YQTEGYS--DYISIEGIMADGEYFPIA-IHDKTPQIG-------F--TETSHITPSI---L 284 (474)
T ss_dssp CCBCHHHH-----------CSSSSSC--SEEEEEEEEETTEEEEEE-EEEECCCBT-------T--BCCEEEESCC---C
T ss_pred CCCceeee-----------eeccccc--ceeEEEEEEECCeEEEEE-EEeeccCCC-------c--cceEEEECCC---C
Confidence 99985332 0111211 267775443333322111 111111110 1 2234567876 6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceE-EEEEEEEcCCCcEEEEeeCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFS-RIDAFVNVDNGEVLIIEVNTVPG 917 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~a-riDf~v~~~~g~~~viEINt~PG 917 (953)
+++..+++++.+.+++++||++|.+ |+||+++. +|++||+||||+++
T Consensus 285 ~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg~~~~iEvNpR~~ 332 (474)
T 3vmm_A 285 DEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMK-NREPGLIESAARFA 332 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GGEEEEEEEESSCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CCCEEEEEEeCCCC
Confidence 8999999999999999999999988 79999996 68999999998776
No 102
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.89 E-value=3.9e-22 Score=230.54 Aligned_cols=223 Identities=16% Similarity=0.156 Sum_probs=165.2
Q ss_pred cCCcEEEEecCCCCCCccH---HHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~---iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+.. +...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 61 ~~~d~v~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 127 (422)
T 2xcl_A 61 NQVGLTIVG-----PEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDL---MKKYDIPTAEYETFTSFD----- 127 (422)
T ss_dssp TTEEEEEEC-----SHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHH---HHHTTCCBCCEEEESCHH-----
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHH---HHHcCCCCCCeEEECCHH-----
Confidence 467999983 45553 45668889999999999999999999999999 999999999998886532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
.+.++.+++ +||+||||..+++|.||.++++.+|+.. +++..+... .+.. ....+|||+|
T Consensus 128 ---~~~~~~~~~-~~P~vvKp~~~~~g~Gv~~v~~~~el~~---~~~~~~~~~---~~g~----------~~~~~lvEe~ 187 (422)
T 2xcl_A 128 ---EAKAYVQEK-GAPIVIKADGLAAGKGVTVAMTEEEAIA---CLHDFLEDE---KFGD----------ASASVVIEEY 187 (422)
T ss_dssp ---HHHHHHHHH-CSSEEEEESSCGGGTCEEEESSHHHHHH---HHHHHHTSC---TTGG----------GGSSEEEEEC
T ss_pred ---HHHHHHHhc-CCCEEEEeCCCCCCCcEEEECCHHHHHH---HHHHHHhhh---hccC----------CCCeEEEEEC
Confidence 233445677 6999999999999999999999998875 455543210 0000 0367999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+|+ |++|.++.+ |..+...+..+. ...+++++.+++.+....+.|++. +
T Consensus 188 i~g~-------------------------E~sv~~~~d-G~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~p~~~--l 237 (422)
T 2xcl_A 188 LSGE-------------------------EFSLMAFVK-GEKVYPMVIAQD--HKRAFDGDKGPNTGGMGAYSPVPQ--I 237 (422)
T ss_dssp CCSE-------------------------EEEEEEEEE-TTEEEECCCBEE--EEEEEGGGEEEEEEEEEEEESCTT--S
T ss_pred CcCc-------------------------EEEEEEEEc-CCEEEecceeee--eehhcCCCCCCCCCCCeeEccCCC--C
Confidence 9997 999999874 333222222111 123556665665555556788752 5
Q ss_pred CHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 870 STEALDKCK-QRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 870 ~~~~~~~i~-~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
++++.++++ +++++++++| ++.|+.++||+++. +| +||+|||++||.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~-~g-~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 238 SEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE-NG-SKVIEFNARFGDPE 292 (422)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE-EEEEEEESSCCTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeC-CC-cEEEEEecCCCCcH
Confidence 788888884 4777777765 66799999999995 57 99999999999664
No 103
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.89 E-value=1.2e-21 Score=229.14 Aligned_cols=221 Identities=15% Similarity=0.180 Sum_probs=166.8
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCc
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTP 709 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~ 709 (953)
+..+|+|++. +|..+|+..++.+|+.+|+|++|++..++.+++||..+|++ |+++|||+|++. .+.+.
T Consensus 77 ~~~id~v~~~-~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~------ 146 (461)
T 2dzd_A 77 AHDVDAIHPG-YGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHA---AVNAGIPVIPGSDGPVDGL------ 146 (461)
T ss_dssp HTTCCEEECC-SSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHH---HHHTTCCBCCBCSSCCSSH------
T ss_pred HhCCCEEEEC-CCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHH---HHHcCCCCCCCcccCcCCH------
Confidence 3568999887 48888998899999999999999999999999999999999 999999999986 44332
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecc
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 789 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEef 789 (953)
+.+.++.+++ +||+||||..+++|.||.++++.+|+..+ ++.+.... .... .+..++||+|
T Consensus 147 --~~~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~---~~~~~~~~-----~~~~--------~~~~~lvEe~ 207 (461)
T 2dzd_A 147 --EDVVAFAEAH-GYPIIIKAALGGGGRGMRIVRSKSEVKEA---FERAKSEA-----KAAF--------GSDEVYVEKL 207 (461)
T ss_dssp --HHHHHHHHHH-CSCEEEEESTTCSSSSEEEECCGGGHHHH---HHHHHHHH-----HHHT--------SCCCEEEEEC
T ss_pred --HHHHHHHHhc-CCcEEEEeCCCCCCCCEEEeCCHHHHHHH---HHHHHHHH-----Hhhc--------CCCcEEEEEC
Confidence 1234455678 69999999999999999999999999864 44332210 0000 0467999999
Q ss_pred ccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 790 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 790 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
|+|. +|+++.++++. |..+.+.+.... ...... ......|++ .
T Consensus 208 i~g~------------------------~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~~~-----~~~~~~P~~--~ 251 (461)
T 2dzd_A 208 IENP------------------------KHIEVQILGDYEGNIVHLYERDCS-----VQRRHQ-----KVVEVAPSV--S 251 (461)
T ss_dssp CCSC------------------------EEEEEEEEECTTCCEEEEEEEEEE-----EEETTE-----EEEEEESCT--T
T ss_pred CCCC------------------------eEEEEEEEEcCCCCEEEEEecccc-----cccccc-----ceEEECCcc--c
Confidence 9984 49999999864 333222211000 000000 122355763 2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
+++++.+++++.+.+++++||+.|++++||+++. |++||+|||++|+.+
T Consensus 252 l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~~~~viEiN~R~~~~ 300 (461)
T 2dzd_A 252 LSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG--DEFYFIEVNPRIQVE 300 (461)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET--TEEEEEEEESSCCGG
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC--CCEEEEEEECCCCCc
Confidence 6889999999999999999999999999999983 789999999999853
No 104
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.88 E-value=2.2e-22 Score=225.70 Aligned_cols=224 Identities=15% Similarity=0.119 Sum_probs=159.6
Q ss_pred cCCcEEEEecCCCCCC--------ccHHHHHHHHc----CCCEeCCChHHHHHhcChHHHHHHHHHHHHC-------CCC
Q 002207 633 ENQATVFIAVHGGIGE--------DGTLQSLLEAE----GVPYTGPGVMASKTCMDKVATSLALNHLADL-------GVL 693 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GE--------dg~iq~llE~~----gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~-------GIp 693 (953)
..+|+||+.+||..|| ++.+|.+++.. |+|.+ ++..++..|.||..|.++ |+++ |||
T Consensus 62 ~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vi-np~~ai~~~~dk~~~~~~---L~k~~~~~~~~gIp 137 (346)
T 2q7d_A 62 GPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVL-DPLPAIRTLLDRSKSYEL---IRKIEAYMEDDRIC 137 (346)
T ss_dssp CCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEE-SCHHHHHHTTBHHHHHHH---HHHHHHHHCBTTEE
T ss_pred CCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEc-CCHHHHHHhhhHHHHHHH---HHhhcccccCCCCC
Confidence 3579999999999887 58899887664 78755 567899999999999998 6765 999
Q ss_pred ccCeEEEeCccccCCchhhHHHHHH-hhcCCCcEEEecCCC-CC-CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccc
Q 002207 694 TINKDVRRKEDLLKTPIVDIWHELT-SKLQCKTLCVKPARD-GC-STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRA 770 (953)
Q Consensus 694 tp~~~~v~~~~~~~~~~~~~~~~~~-~~lg~~PlvVKP~~~-gs-S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~ 770 (953)
||++.++.+.+.. +....+. ..+ +||+||||..+ |+ |.|+.++.+.++|..+
T Consensus 138 ~P~t~~~~~~~~~-----~~~~~~~~~~l-g~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~------------------- 192 (346)
T 2q7d_A 138 SPPFMELTSLCGD-----DTMRLLEKNGL-TFPFICKTRVAHGTNSHEMAIVFNQEGLNAI------------------- 192 (346)
T ss_dssp CCCEEEECSCCCT-----THHHHHHHTTC-CSSEEEECSBCSSTTCCEEEEECSGGGTTC--------------------
T ss_pred CCCEEEEeCCCHH-----HHHHHHHhcCC-CCCEEEEecCCCcceeeeeEEecCHHHHHhc-------------------
Confidence 9999998753210 1111221 357 69999999974 33 7899999998887631
Q ss_pred cccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCC--ceeeCceEEEe-cCCccc
Q 002207 771 HGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGS--MHSLMPSVTVK-ESGDIL 847 (953)
Q Consensus 771 ~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~--~~~~~p~~~i~-~~~~~~ 847 (953)
...++|||||+.. | +|++|.|+|+.-- .....|.+++. ..+++|
T Consensus 193 ----------~~~~lvQefI~~~-------------------G----~dirv~VvG~~v~~~~r~sl~~~~~~~~~~~~~ 239 (346)
T 2q7d_A 193 ----------QPPCVVQNFINHN-------------------A----VLYKVFVVGESYTVVQRPSLKNFSAGTSDRESI 239 (346)
T ss_dssp -----------CCEEEEECCCCT-------------------T----EEEEEEEETTEEEEEEEECCCCCC----CCCCE
T ss_pred ----------CCCEEEEEeeCCC-------------------C----eEEEEEEECCEEEEEEEecCCCcCcCccccccc
Confidence 3569999999721 1 4999999986300 00011111121 246799
Q ss_pred cccc-ccc-CCCceeEcCC-----CCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 848 SLEE-KFQ-GGTGINLTPP-----PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 848 d~~~-Ky~-~g~~~~~~P~-----~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+|+. ||. +|.+..++|. ... +++ .++++++|.+++++|||..+ +||++++.++|++||+|||+.|||+.
T Consensus 240 ~f~s~~~~~~g~~~~~~~~~~~~~~~~-~~~--~~el~~lA~~a~~alGl~~~-gvDii~~~~~g~~~VlEVN~~PG~~g 315 (346)
T 2q7d_A 240 FFNSHNVSKPESSSVLTELDKIEGVFE-RPS--DEVIRELSRALRQALGVSLF-GIDIIINNQTGQHAVIDINAFPGYEG 315 (346)
T ss_dssp EEEGGGTSSTTCCCGGGCCSCCCSCCC-CCC--HHHHHHHHHHHHHHHCCCEE-EEEEEECTTTCCEEEEEEEESCCCTT
T ss_pred cccceeeccCCcccccccccccccccc-CCC--hHHHHHHHHHHHHHhCCceE-eeEEEeecCCCCEEEEEEeCCccccc
Confidence 9997 654 4555545551 111 222 46889999999999999965 69999974358899999999999999
Q ss_pred Cc
Q 002207 921 ST 922 (953)
Q Consensus 921 ~S 922 (953)
.+
T Consensus 316 ~~ 317 (346)
T 2q7d_A 316 VS 317 (346)
T ss_dssp CT
T ss_pred cc
Confidence 86
No 105
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.88 E-value=7.4e-22 Score=230.35 Aligned_cols=223 Identities=18% Similarity=0.199 Sum_probs=162.3
Q ss_pred cCCcEEEEecCCCCCCcc---HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 633 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg---~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
..+|+|++. .|+. .+...|+.+|+|++|++..++.+|+||..+|++ |+++|||+|++..+.+.+
T Consensus 87 ~~~d~V~~~-----~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 153 (452)
T 2qk4_A 87 KKIEFVVVG-----PEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEF---MDRHGIPTAQWKAFTKPE----- 153 (452)
T ss_dssp HTCCEEEEC-----SSHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHH---HHHTTCCBCCEEEESSHH-----
T ss_pred cCCCEEEEC-----CcHHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHH---HHHCCCCCCCeEEECCHH-----
Confidence 468999983 5665 344667888999999999999999999999999 999999999999886532
Q ss_pred hhhHHHHHHhhcCCCc-EEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 710 IVDIWHELTSKLQCKT-LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~P-lvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
.+.++.+++ +|| +||||..+++|.||.+|++.+|+.. +++..+.. +.+. .....+|||+
T Consensus 154 ---~~~~~~~~~-g~P~vvvKp~~~~gg~Gv~~v~~~~el~~---~~~~~~~~---~~~g----------~~~~~~lvEe 213 (452)
T 2qk4_A 154 ---EACSFILSA-DFPALVVKASGLAAGKGVIVAKSKEEACK---AVQEIMQE---KAFG----------AAGETIVIEE 213 (452)
T ss_dssp ---HHHHHHHHC-SSCEEEEEESBC---CCEEECSSHHHHHH---HHHHHTTC--------------------CCEEEEE
T ss_pred ---HHHHHHHhC-CCCeEEEEeCCCCCCCCEEEeCCHHHHHH---HHHHHHhh---hhcc----------CCCCeEEEEE
Confidence 234455678 699 9999999999999999999998875 45544321 0000 0136799999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
||+|+ |++|.++.+ |..+...+..+. ...+++++.++..+....+.|++.
T Consensus 214 ~i~G~-------------------------E~sv~~~~d-G~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~P~~~-- 263 (452)
T 2qk4_A 214 LLDGE-------------------------EVSCLCFTD-GKTVAPMPPAQD--HKRLLEGDGGPNTGGMGAYCPAPQ-- 263 (452)
T ss_dssp CCCSE-------------------------EEEEEEEEC-SSCEEECCCBEE--EEEEETTTEEEEEEEEEEEESCTT--
T ss_pred CCCCC-------------------------eEEEEEEEC-CCEEEEcceeee--cccccCCCCCCCCCCceeeccCcc--
Confidence 99997 999999974 443322333221 123555555665555556788762
Q ss_pred CCHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 869 MSTEALDKCK-QRIELIANAL-----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 869 l~~~~~~~i~-~~a~~~~~aL-----g~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+++++.++++ +++++++++| ++.|++++||+++. +| +||+|||++||.+.
T Consensus 264 l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-~~viEiN~R~~~~~ 319 (452)
T 2qk4_A 264 VSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-NG-PKVLEFNCRFGDPE 319 (452)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-TE-EEEEEEESSCCTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-cEEEEEeccCCCcH
Confidence 5788888886 6888888775 45799999999985 57 99999999999643
No 106
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.88 E-value=2.8e-21 Score=223.03 Aligned_cols=209 Identities=16% Similarity=0.159 Sum_probs=156.1
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++-+ -..+-.+-..|+.. .++|+++.++.+|+||..+|++ |+++|||||++..+.+.+
T Consensus 95 ~~~D~V~~~~---e~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~---l~~~Gip~p~~~~v~~~~-------- 158 (419)
T 4e4t_A 95 GLCEAVSTEF---ENVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRF---IEASGVPVAPHVVIESAA-------- 158 (419)
T ss_dssp HHCSEEEECC---TTCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHH---HHHTTCCBCCEEEECSHH--------
T ss_pred hcCCEEEEcc---CcCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHH---HHHcCcCCCCeEEECCHH--------
Confidence 4689988533 22333344556666 4889999999999999999999 899999999999887532
Q ss_pred HHHHHHhh----cCCCcEEEecC-CCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEe
Q 002207 713 IWHELTSK----LQCKTLCVKPA-RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 787 (953)
Q Consensus 713 ~~~~~~~~----lg~~PlvVKP~-~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVE 787 (953)
.+.++.++ + ||+||||. .+++|.||.+|++.+|+.. +++.. . +..+|||
T Consensus 159 e~~~~~~~~~~~~--~P~VvKp~~~g~~G~Gv~~v~~~~el~~---a~~~~--~-------------------~~~~lvE 212 (419)
T 4e4t_A 159 ALAALDDAALDAV--LPGILKTARLGYDGKGQVRVSTAREARD---AHAAL--G-------------------GVPCVLE 212 (419)
T ss_dssp HHHTSCHHHHHTT--CSEEEEESSSCCTTTTEEEECSHHHHHH---HHHHT--T-------------------TCCEEEE
T ss_pred HHHHHHHhhcccc--CCEEEEecCCCCCCCceEEECCHHHHHH---HHHhc--C-------------------CCcEEEe
Confidence 12223334 5 89999999 6778899999999999875 34322 1 4689999
Q ss_pred ccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCC
Q 002207 788 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 867 (953)
Q Consensus 788 efI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~ 867 (953)
+||+|. +|++|.++++........|..+.....++++ ..+.|++.
T Consensus 213 e~i~~~------------------------~Eisv~v~~~~~G~~~~~~~~e~~~~~g~~~----------~~~~Pa~~- 257 (419)
T 4e4t_A 213 KRLPLK------------------------YEVSALIARGADGRSAAFPLAQNVHHNGILA----------LTIVPAPA- 257 (419)
T ss_dssp ECCCEE------------------------EEEEEEEEECTTSCEEECCCEEEEEETTEEE----------EEEESCTT-
T ss_pred ecCCCC------------------------eEEEEEEEEcCCCCEEEEeCeEEEeeCCeEE----------EEEcCCCC-
Confidence 999964 4999999976543333334433322222221 23567752
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCC
Q 002207 868 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 868 ~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~ 920 (953)
+++++.+++++++.+++++||+.|+++||||++. +|++||||||++|+.+.
T Consensus 258 -l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG~~~v~EiNpR~~~sg 308 (419)
T 4e4t_A 258 -ADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DGSFVANEMAPRPHNSG 308 (419)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TCCEEEEEEESSCCGGG
T ss_pred -CCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CCCEEEEEEeCCCCCCC
Confidence 5899999999999999999999999999999995 68999999999999753
No 107
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.87 E-value=4.8e-21 Score=213.31 Aligned_cols=208 Identities=12% Similarity=0.092 Sum_probs=148.1
Q ss_pred CcEEEEecCCCCCCccHHHHHHHH-----cCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 635 QATVFIAVHGGIGEDGTLQSLLEA-----EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 635 ~dvvf~~~hG~~GEdg~iq~llE~-----~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
+|+||+.+++.. +.+++.|+. .|+|+ ++++.++++|+||..++++ |+++|||+|++..+.+.+
T Consensus 56 ~d~v~~~~~~~~---~~~~~~l~~~~~~~~g~~~-~~~~~~~~~~~dK~~~~~~---l~~~gi~~P~~~~~~~~~----- 123 (324)
T 1z2n_X 56 PNAIITKRTHPV---GKMADEMRKYEKDHPKVLF-LESSAIHDMMSSREEINAL---LIKNNIPIPNSFSVKSKE----- 123 (324)
T ss_dssp CSEEEECCSCSS---SHHHHHHHHHHHHCTTSEE-ETCHHHHHHHTBHHHHHHH---HHHTTCCCSCEEEESSHH-----
T ss_pred ceEEEEeccchH---HHHHHHHHHHHHhCCCCeE-eCCHHHHHHHhCHHHHHHH---HHHCCCCCCCEEEeCCHH-----
Confidence 589998887654 457777777 79996 5789999999999999999 999999999999886532
Q ss_pred hhhHHHHHHhh--cCCCcEEEecCCCCCC---cceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeE
Q 002207 710 IVDIWHELTSK--LQCKTLCVKPARDGCS---TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784 (953)
Q Consensus 710 ~~~~~~~~~~~--lg~~PlvVKP~~~gsS---~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~v 784 (953)
.+.++.+. + +||+||||..+++| .|+.++++.++|.. . +..+
T Consensus 124 ---~~~~~~~~~~~-~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~----------~-------------------~~~~ 170 (324)
T 1z2n_X 124 ---EVIQLLQSKQL-ILPFIVKPENAQGTFNAHQMKIVLEQEGIDD----------I-------------------HFPC 170 (324)
T ss_dssp ---HHHHHHHTTCS-CSSEEEEESBCSSSSGGGEEEEECSGGGGTT----------C-------------------CSSE
T ss_pred ---HHHHHHHHcCC-CCCEEEeeCCCCCCccceeeEEEeCHHHHhh----------c-------------------CCCE
Confidence 12333344 4 49999999998777 99999999887641 1 4679
Q ss_pred EEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecC---------Ccccccc-----
Q 002207 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES---------GDILSLE----- 850 (953)
Q Consensus 785 lVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~---------~~~~d~~----- 850 (953)
|||+||++. | +|++|.++++. .. +..+.... ..+|++.
T Consensus 171 lvqe~i~~~-------------------g----~~~~v~v~g~~--~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 222 (324)
T 1z2n_X 171 LCQHYINHN-------------------N----KIVKVFCIGNT--LK---WQTRTSLPNVHRCGIKSVDFNNQHLEDIL 222 (324)
T ss_dssp EEEECCCCT-------------------T----CEEEEEEETTE--EE---EEEECCCCCCCCSSCCEEEEETTBGGGGG
T ss_pred EEEEccCCC-------------------C----cEEEEEEECCE--EE---EEEecCcccccCCCccceeeccccchhhh
Confidence 999999863 1 38888888753 11 11121110 0144443
Q ss_pred -------cccc----------CCCc-eeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEee
Q 002207 851 -------EKFQ----------GGTG-INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 912 (953)
Q Consensus 851 -------~Ky~----------~g~~-~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEI 912 (953)
+||. .+.. ....|.. ++ .+++++.|.+++++||+. +++|||+++.++|++||+||
T Consensus 223 ~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~i~~~a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEv 295 (324)
T 1z2n_X 223 SWPEGVIDKQDIIENSANRFGSKILEDPILLNL---TS---EAEMRDLAYKVRCALGVQ-LCGIDFIKENEQGNPLVVDV 295 (324)
T ss_dssp GSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTS---CC---HHHHHHHHHHHHHHHTCS-EEEEEEECGGGCSSCEEEEE
T ss_pred ccccccccccccccccccchhhccccCCccccC---CC---HHHHHHHHHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEE
Confidence 1211 0000 0011221 23 158899999999999997 99999999744689999999
Q ss_pred CCCCCCCCCc
Q 002207 913 NTVPGMTPST 922 (953)
Q Consensus 913 Nt~PGlt~~S 922 (953)
|++|||+..+
T Consensus 296 N~~Pg~~~~~ 305 (324)
T 1z2n_X 296 NVFPSYGGKV 305 (324)
T ss_dssp EESCCTTSCB
T ss_pred cCCCCcCCCC
Confidence 9999999987
No 108
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.86 E-value=1e-21 Score=222.54 Aligned_cols=203 Identities=20% Similarity=0.152 Sum_probs=125.7
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++.. |+..+ .+++.+.. ++|+++.++.+|+||..+|++ |+++|||+|++..++ .+.
T Consensus 56 ~~~d~v~~~~-----e~~~~-~~~~~l~~-~~g~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~-~~~------- 117 (365)
T 2z04_A 56 DSCDIITYEF-----EHIKD-EVLEKCES-KLIPNPQALYVKKSRIREKLF---LKKHGFPVPEFLVIK-RDE------- 117 (365)
T ss_dssp HHCSEEEESS-----SCCCH-HHHHHHTT-TBSSCTHHHHHHTCHHHHHHH---HHTTTCCCCCEEEC------------
T ss_pred hcCCEEEECC-----CCCcH-HHHHHHhh-hcCCCHHHHHHhhCHHHHHHH---HHHcCCCCCCEEEEc-HHH-------
Confidence 4579999865 55555 36666644 889999999999999999999 999999999998776 331
Q ss_pred HHHHHHhhcCCCcEEEecCCCC-CCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 713 IWHELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 713 ~~~~~~~~lg~~PlvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
+.++.+++ +||+||||..++ +|.||.++++.+|+.+ +++..+. +..+|||+||+
T Consensus 118 -~~~~~~~~-~~P~vvKp~~~~~~g~Gv~~v~~~~el~~---~~~~~~~--------------------~~~~lvEe~i~ 172 (365)
T 2z04_A 118 -IIDALKSF-KLPVVIKAEKLGYDGKGQYRIKKLEDANQ---VVKNHDK--------------------EESFIIEEFVK 172 (365)
T ss_dssp ------------CEEEECC-----------------------------------------------------CEEEECCC
T ss_pred -HHHHHHhc-CCCEEEEEcCCCcCCCCeEEECCHHHHHH---HHHHhcc--------------------CCCEEEEccCC
Confidence 22344567 699999999999 9999999999988875 4443321 36799999999
Q ss_pred -CcccccccccccccchhhhhcCCCceeEEEEEEEcCC-CCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 792 -TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 792 -G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~-~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
|+ |+++.++.+. |.... .+..+.....++++ ..+.|++ +
T Consensus 173 ~g~-------------------------e~sv~~~~d~~G~~~~-~~~~~~~~~~~~~~----------~~~~p~~---~ 213 (365)
T 2z04_A 173 FEA-------------------------EISCIGVRDREGKTYF-YPQPFNKHEEGILI----------YNYVPYA---K 213 (365)
T ss_dssp CSE-------------------------EEEEEEEECTTCCEEE-CCEEEEEEETTEEE----------EEEEEEE---C
T ss_pred CCE-------------------------EEEEEEEECCCCCEEE-ECCEEEEEeCCEeE----------EEECCHh---H
Confidence 75 9999999864 44433 34333222222222 1355654 2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCc
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 922 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S 922 (953)
.+++++.+++++++||+.|++++||+++. +|++||+|||++||.+.+.
T Consensus 214 ----~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g~~~~iEiN~R~~~~~~~ 261 (365)
T 2z04_A 214 ----LKEAEEITKRLMELLDIVGVFTVEFFLLK-DGRVLINEFAPRVHNTGHW 261 (365)
T ss_dssp ----CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSCEEEEEEESSCCGGGTT
T ss_pred ----HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CCcEEEEEeccCcCCCceE
Confidence 45788999999999999999999999985 6889999999999987654
No 109
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.86 E-value=1.3e-21 Score=237.86 Aligned_cols=250 Identities=14% Similarity=0.186 Sum_probs=136.7
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEe
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRR 701 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~ 701 (953)
+..++.++ ..+|+|+|.. |...|+..++..|+.+|+|++|+++.++.++.||..+|++ |+++|||+|+++ .+.
T Consensus 64 ~~i~~~a~~~~~daI~pg~-gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~---l~~~GVPvpp~~~~~~~ 139 (681)
T 3n6r_A 64 DKVMAAIRATGAQAVHPGY-GFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKI---AQEANVSTVPGYMGLIE 139 (681)
T ss_dssp HHHHHHHHHTCCSCCBCCS-SSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHH---HHTTTCCCCCC------
T ss_pred HHHHHHHHHhCcCEEEECC-CccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHH---HHHcCcCcCCccccCcC
Confidence 34444433 4678877764 6778999999999999999999999999999999999999 999999999985 333
Q ss_pred CccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCC
Q 002207 702 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
+.+ .+.++.+++ +||+||||..+++|.||.+|++.+|+.+ +++.+.+... .. ..+
T Consensus 140 s~~--------e~~~~a~~i-gyPvVvKp~~ggggkGv~iv~~~~el~~---a~~~~~~ea~-----~~--------fg~ 194 (681)
T 3n6r_A 140 DAD--------EAVKISNQI-GYPVMIKASAGGGGKGMRIAWNDQEARE---GFQSSKNEAA-----NS--------FGD 194 (681)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHH--------HHHHHHHhc-CCcEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHHHHH-----Hh--------CCC
Confidence 322 133445678 6999999999999999999999999886 4444332100 00 014
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-CceeeCceEEEecCCccccccccccCCCcee
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGIN 860 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~-~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~ 860 (953)
+.++||+||+|. +|++|.++++.. ..+.+ +... ..+.....| ...
T Consensus 195 ~~vlvEe~I~g~------------------------rei~V~v~~d~~G~vv~l-~~rd----~s~qr~~~k-----~~e 240 (681)
T 3n6r_A 195 DRIFIEKFVTQP------------------------RHIEIQVLCDSHGNGIYL-GERE----CSIQRRNQK-----VVE 240 (681)
T ss_dssp --------CCSC------------------------EEEEEEEECCSSSCCEEE-EEEE----CCCEETTEE-----CEE
T ss_pred CcEEEEeccCCC------------------------cEEEEEEEEeCCCCEEEE-eeee----cceeccCcc-----EEE
Confidence 689999999994 499999998753 33322 2211 011111112 233
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHH
Q 002207 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 940 (953)
Q Consensus 861 ~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l 940 (953)
..|++. +++++.+++.+.+.++++++|+.|++++||+++. +|++||+||||+++.+ ..+..++. | .++
T Consensus 241 ~~Pa~~--l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg~~~~lEiNpR~~~~--~~~te~~t---G----vdl 308 (681)
T 3n6r_A 241 EAPSPF--LDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKNFYFLEMNTRLQVE--HPVTELIT---G----VDL 308 (681)
T ss_dssp EESCSS--CCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TSCCCCCEEECSCCTT--HHHHHHHH---T----CCH
T ss_pred ecCCCC--CCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CCCEEEEecccccCCC--cHHhHHHh---C----CCH
Confidence 467653 6899999999999999999999999999999985 6899999999999765 22333332 1 256
Q ss_pred HHHHHHHHh
Q 002207 941 FRKVLDLGS 949 (953)
Q Consensus 941 ~~~li~~a~ 949 (953)
++.+++.++
T Consensus 309 ~~~~l~~a~ 317 (681)
T 3n6r_A 309 VEQMIRVAA 317 (681)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 666666665
No 110
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.86 E-value=9.3e-21 Score=214.62 Aligned_cols=189 Identities=20% Similarity=0.226 Sum_probs=142.7
Q ss_pred hcCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchh
Q 002207 632 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 711 (953)
Q Consensus 632 ~~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~ 711 (953)
.+.+|+|++..+ ...+....+.+++..|+| +|+++.++.+++||..+|++ |+++|||+|++.
T Consensus 61 ~~~~D~v~~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~a~~~~~dK~~~k~~---l~~~gip~~~~~------------- 122 (363)
T 4ffl_A 61 SKRVDAVLPVNE-NLACIEFLNSIKEKFSCP-VLFDFEAYRISRDKKKSKDY---FKSIGVPTPQDR------------- 122 (363)
T ss_dssp HTSSSEEEECCC-CHHHHHHHHHHGGGCSSC-BCCCHHHHHHHTSHHHHHHH---HHHTTCCCCCBS-------------
T ss_pred hcCCCEEEECCC-ChhHHHHHHHHHHHCCCc-cCCCHHHHHHhhCHHHHHHH---HHhcCCCCCCce-------------
Confidence 456899988753 333445677888999998 59999999999999999999 999999999862
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 712 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 712 ~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+ +||+||||+.+++|.|+.++++.+++.. ....+++|+||+
T Consensus 123 --------~i-g~P~vvKp~~g~g~~gv~~v~~~~~~~~-----------------------------~~~~~~~ee~i~ 164 (363)
T 4ffl_A 123 --------PS-KPPYFVKPPCESSSVGARIIYDDKDLEG-----------------------------LEPDTLVEEYVE 164 (363)
T ss_dssp --------CS-SSCEEEECSSCCTTTTCEEEC------C-----------------------------CCTTCEEEECCC
T ss_pred --------ec-CCCEEEEECCCCCCcCeEEeccHHHhhh-----------------------------hccchhhhhhcc
Confidence 23 6999999999999999999998777542 146789999999
Q ss_pred CcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCH
Q 002207 792 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 871 (953)
Q Consensus 792 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~ 871 (953)
|+ |++|.++++++............. +.+....+.|++. .
T Consensus 165 g~-------------------------e~sv~~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~p~~~---~- 204 (363)
T 4ffl_A 165 GE-------------------------VVSLEVVGDGSHFAVVKETLVHID-----------ETYDCHMVTPLPA---N- 204 (363)
T ss_dssp SE-------------------------EEEEEEEEESSCEEECCCEEEEEC-----------TTSCEEEEEECCC---C-
T ss_pred Cc-------------------------EEEEEEEEECCeEEEEEEEEeccC-----------CcccceeecchhH---H-
Confidence 97 999999988765544333322211 1223345667662 3
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCC-CCCCCC
Q 002207 872 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV-PGMTPS 921 (953)
Q Consensus 872 ~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~-PGlt~~ 921 (953)
+++++.+.+++++||+.|+.++||++++ +++|||||||+ ||.++.
T Consensus 205 ---~~~~~~a~~~~~~l~~~G~~~vef~~~~--~~~~viEiN~R~~g~~~~ 250 (363)
T 4ffl_A 205 ---PLFRQISHDLAANLPLKGIMDVEAIFGP--KGLRVIEIDARFPSQTPT 250 (363)
T ss_dssp ---HHHHHHHHHHHHTTTCEEEEEEEEEEET--TEEEEEEEECSCCSSHHH
T ss_pred ---HHHHHHHHHHHHhCCccceeeeeeEEeC--CeEEEEEEeCCCCCChHH
Confidence 3578899999999999999999999983 56999999996 787653
No 111
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.85 E-value=4.9e-21 Score=243.88 Aligned_cols=252 Identities=15% Similarity=0.172 Sum_probs=136.0
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE-EEeC
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD-VRRK 702 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~-~v~~ 702 (953)
+.+++.++ ..+|+|++.. |...|+..++.+|+.+|+|++|++..++.++.||..+|++ |+++|||+|++. .+.+
T Consensus 93 ~~Il~~a~~~~iDaI~pg~-g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~l---l~~aGIPvpp~~~~v~s 168 (1236)
T 3va7_A 93 DKIINAAKKTGAQAIIPGY-GFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREI---AERAKVPLVPGSGLIKD 168 (1236)
T ss_dssp HHHHHHHHHTTCSEEECCS-SGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHH---HHHTTCCCCC-------
T ss_pred HHHHHHHHHhCCCEEEECC-ccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCeeEecCC
Confidence 34444433 4689999887 8888999999999999999999999999999999999999 999999999953 4443
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
.+ .+.++.+++ +||+||||..+++|+||.+|++.+|+.+ +++.+..... . ...+.
T Consensus 169 ~e--------ea~~~a~~i-GyPvVVKP~~GgGGkGV~iv~s~eEL~~---a~~~~~~~a~-----~--------~~~~~ 223 (1236)
T 3va7_A 169 AK--------EAKEVAKKL-EYPVMVKSTAGGGGIGLQKVDSEDDIER---VFETVQHQGK-----S--------YFGDA 223 (1236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH--------HHHHHHHHc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHHHHH-----h--------ccCCC
Confidence 22 123345678 6999999999999999999999999886 3444322100 0 00146
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
.++||+||+|. +|++|.+++++.......+.... .+..+..| .....
T Consensus 224 ~vlVEeyI~G~------------------------rEisV~vl~Dg~g~vv~l~~rd~----s~qr~~~k-----~~e~~ 270 (1236)
T 3va7_A 224 GVFMERFVNNA------------------------RHVEIQMMGDGFGKAIAIGERDC----SLQRRNQK-----VIEET 270 (1236)
T ss_dssp ---------CC------------------------EEEEEEEEEESSSCEEEEEEEEE----EEEETTEE-----EEEEE
T ss_pred cEEEeeccCCC------------------------eEEEEEEEecCCceEEEEeeeee----eeeecCcc-----eEEEc
Confidence 79999999994 39999999875433222222111 11122222 23456
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHH
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFR 942 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~ 942 (953)
|++. +++++.+++.+.+.+++++||++|+++|||+++.++|++||||||++++-+. .+.+++. . .++++
T Consensus 271 Pa~~--l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~y~iEINpRl~g~~--~~te~vt-----G--vDlv~ 339 (1236)
T 3va7_A 271 PAPN--LPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEH--PITEMVT-----G--LDLVE 339 (1236)
T ss_dssp SCSS--CCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEEEEEEECSCCTTH--HHHHHHH-----C--CCHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcEEEEEEECCCCCcc--HHHHHHH-----C--CCHHH
Confidence 7753 6899999999999999999999999999999996458999999999886532 3333332 1 25666
Q ss_pred HHHHHHh
Q 002207 943 KVLDLGS 949 (953)
Q Consensus 943 ~li~~a~ 949 (953)
.+++.++
T Consensus 340 ~~l~~a~ 346 (1236)
T 3va7_A 340 WMLRIAA 346 (1236)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 6666655
No 112
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.85 E-value=1.1e-20 Score=240.15 Aligned_cols=249 Identities=15% Similarity=0.189 Sum_probs=172.9
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEe
Q 002207 625 NEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRR 701 (953)
Q Consensus 625 ~~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~ 701 (953)
+..++.++ ..+|+|+|. +|...|+..++..|+.+|+|++|+++.++.+|.||..+|++ |+++|||+|++. .+.
T Consensus 67 ~~Ii~~a~~~~~DaI~pg-~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~l---l~~aGIPvpp~~~~~v~ 142 (1150)
T 3hbl_A 67 ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT---AIKADLPVIPGTDGPIK 142 (1150)
T ss_dssp HHHHHHHHHTTCSEEECT-TTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHH---HHHTTCCBCCBCSSCBC
T ss_pred HHHHHHHHHhCCCEEEEC-CCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHH---HHHcCcCCCCccccCCC
Confidence 34444433 468998887 78888999999999999999999999999999999999999 999999999987 444
Q ss_pred CccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCC
Q 002207 702 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 781 (953)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~ 781 (953)
+.+. +.++.+++ +||+||||+.+++|.||.+|++.+||.. +++.+.+... .+. .+
T Consensus 143 s~ee--------a~~~a~~i-GyPvVVKP~~GgGg~Gv~vv~s~eeL~~---a~~~a~~~a~-----~~f--------g~ 197 (1150)
T 3hbl_A 143 SYEL--------AKEFAEEA-GFPLMIKATSGGGGKGMRIVREESELED---AFHRAKSEAE-----KSF--------GN 197 (1150)
T ss_dssp SSST--------TTTTGGGT-CSSEEEECCC-------CEECCSSSCTH---HHHSSSSSCC------------------
T ss_pred CHHH--------HHHHHHHc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHHHHH-----hhc--------CC
Confidence 4321 12334678 6999999999999999999999999985 4544432100 000 14
Q ss_pred CeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCC-ceeeCceEEEecCCccccccccccCCCcee
Q 002207 782 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGS-MHSLMPSVTVKESGDILSLEEKFQGGTGIN 860 (953)
Q Consensus 782 ~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~-~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~ 860 (953)
..++||+||+|. +|++|.++++... .+.+...... +... ......
T Consensus 198 ~~vlVEeyI~G~------------------------reieV~vl~d~~G~vv~l~er~~s-----~qr~-----~~k~~e 243 (1150)
T 3hbl_A 198 SEVYIERYIDNP------------------------KHIEVQVIGDEHGNIVHLFERDCS-----VQRR-----HQKVVE 243 (1150)
T ss_dssp -CBEEECCCSSC------------------------EEEEEEEEECSSSCEEEEEEEEEE-----EESS-----SCEEEE
T ss_pred CcEEEEEccCCC------------------------cEEEEEEEEeCCCCEEEEEeeccc-----eecc-----CceeEE
Confidence 689999999995 4999999987533 2222111000 0000 111234
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHH
Q 002207 861 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 940 (953)
Q Consensus 861 ~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l 940 (953)
..|++. ++++..+++.+.+.++++++|++|++++||+++. + ++|||||||+++-.. .+..++. | .++
T Consensus 244 ~~Pa~~--l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~-d-~~y~iEINpR~~g~~--~vte~~t---G----vDl 310 (1150)
T 3hbl_A 244 VAPSVG--LSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSG-D-EFFFIEVNPRVQVEH--TITEMVT---G----IDI 310 (1150)
T ss_dssp ESSCSS--CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET-T-EEEEEEEECSCCTTH--HHHHHHH---C----CCH
T ss_pred ecCCCC--CCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-C-eEEEEEEeCCCCCCc--ceeehhc---C----CCH
Confidence 567642 7899999999999999999999999999999984 3 899999999998542 2333332 1 256
Q ss_pred HHHHHHHHh
Q 002207 941 FRKVLDLGS 949 (953)
Q Consensus 941 ~~~li~~a~ 949 (953)
++.+|+.|+
T Consensus 311 v~~~i~ia~ 319 (1150)
T 3hbl_A 311 VKTQILVAA 319 (1150)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 666666654
No 113
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.85 E-value=2.3e-20 Score=210.23 Aligned_cols=312 Identities=16% Similarity=0.143 Sum_probs=194.8
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcc--
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSL-- 153 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (953)
.+++|++|.|| + |+.++.++++.||+++.++-+.+...|. +.. ..+. +..-. .+...
T Consensus 17 ~~~~I~ilGs~-l---------~~~l~~aAk~lG~~vi~vd~~~~~p~~~---~~~----~ad~-~~~~d---~~~d~~~ 75 (361)
T 2r7k_A 17 DEITIATLGSH-T---------SLHILKGAKLEGFSTVCITMKGRDVPYK---RFK----VADK-FIYVD---NFSDIKN 75 (361)
T ss_dssp TSCEEEEESST-T---------HHHHHHHHHHTTCCEEEEECTTSCHHHH---HTT----CCSE-EEECS---SGGGGGS
T ss_pred cCCEEEEECcH-H---------HHHHHHHHHHCCCEEEEEECCCCCCccc---ccc----cCce-EEECC---CcccccH
Confidence 35789999988 5 7888999999999998776443211000 000 0010 00000 00000
Q ss_pred hhHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 154 SEFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 154 ~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
....+.+.+..|+|.|-.. .-.--.+..+++..|+|+.| +..+..+..||..+|++|+++|||||++ +.+.+
T Consensus 76 ~~~l~~l~~~~~vV~pe~~--~v~~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~~~~--- 147 (361)
T 2r7k_A 76 EEIQEKLRELNSIVVPHGS--FIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPKK--YESPE--- 147 (361)
T ss_dssp HHHHHHHHHTTEEECCBHH--HHHHHCHHHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTCCCCCE--ESSGG---
T ss_pred HHHHHHHHHcCCEEEeCch--hhhHHHHHHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCcCCCCE--eCCHH---
Confidence 1222233334466654220 00000234555689999988 6788889999999999999999999976 33211
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcC-C--C--CcEEEeccCCCCeEEEEEEEE
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-I--D--DRVVVELFLEGGSEFTAIVLD 308 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~-~--~--~~vlVEefI~Gg~E~tv~Vl~ 308 (953)
...+|+||||..+++|+|+.++++.+|+.++..+++... + . .+++|||||+| .|+++.++-
T Consensus 148 -------------e~~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~G-~e~s~~~f~ 213 (361)
T 2r7k_A 148 -------------DIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVG-TNFCIHYFY 213 (361)
T ss_dssp -------------GCCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCS-EEEEEEEEE
T ss_pred -------------HcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccce-EEeeEEEEe
Confidence 135799999999999999999999999877665554321 1 1 46999999998 999743332
Q ss_pred eCCCCccccEEecc-eEEEEeccCccccccCCccccc------ccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh
Q 002207 309 VGSGFDCHPVVLLP-TEVELQFQGSVDVREKDAIFNY------RRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL 381 (953)
Q Consensus 309 ~~~g~~~~~v~l~~-~ei~~~~~~~~~~~~~~~~~dy------~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL 381 (953)
.--.+ +..++.. .++..+ .++++.. .....+.....-+.|+.+++++.+++++++.++.++|
T Consensus 214 ~~~~~--~~e~~~id~r~~~~---------~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~l~~~~~~~a~~~a~~v~~al 282 (361)
T 2r7k_A 214 SPLKD--EVELLGMDKRYESN---------IDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKA 282 (361)
T ss_dssp ETTTT--EEEEEEEEEEEEEE---------HHHHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHH
T ss_pred cccCC--eeEEEEecceEEee---------cccceecchhhhhcccCCCceEEecCcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 10001 1111111 111111 0111110 0001111101112399999999999999999999999
Q ss_pred ------CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCC-----CcchHHHHHHHhCCCHHHHHHH
Q 002207 382 ------GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME-----QTSFLFQQASKVGFSHSNILRT 450 (953)
Q Consensus 382 ------g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t-----~~S~~p~~a~~~G~s~~~ll~~ 450 (953)
|+.|...+|||+ +++|+++|+||||+||-. ..|-|..+..-.++|..+-+.+
T Consensus 283 ~~~~~~~~~G~~~vE~fv-----------------t~dg~i~V~EIapR~gGg~~~~~~g~p~~~l~~~~~~~~g~r~~~ 345 (361)
T 2r7k_A 283 KELVPPGMIGPFCLQSLC-----------------NENLELVVFEMSARVDGGTNSFMNGGPYSFLYNGEPLSMGQRIAR 345 (361)
T ss_dssp HHHSTTCCCEEEEEEEEE-----------------CTTSCEEEEEEESSBCGGGGGGTTCCTTHHHHHSSCCCHHHHHHH
T ss_pred HhhccCCccceEEEEEEE-----------------cCCCCEEEEEEcCCCCCCcccccCCCCchheeecCCCCHHHHHHH
Confidence 899999999987 678899999999999843 2355777776789998888877
Q ss_pred HHHHHhhh
Q 002207 451 IIGHACSR 458 (953)
Q Consensus 451 li~~a~~r 458 (953)
=|+.|+++
T Consensus 346 e~~~~~~~ 353 (361)
T 2r7k_A 346 EIKMALQL 353 (361)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 78888776
No 114
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.85 E-value=3.9e-21 Score=233.37 Aligned_cols=251 Identities=15% Similarity=0.180 Sum_probs=173.5
Q ss_pred HHHHHhh-cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCcc
Q 002207 626 EWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 704 (953)
Q Consensus 626 ~~~~~~~-~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~ 704 (953)
.+++.++ ..+|+|+|.. |...|+..+...|+..|++++|+++.+..+|.||..+|++ |+++|||+|+++.....+
T Consensus 91 ~i~~~a~~~~~daI~pg~-gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~---l~~~GVpvpp~~~~~~~s 166 (675)
T 3u9t_A 91 RIIAAALASGAQAIHPGY-GFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKAL---MEEAGVPLVPGYHGEAQD 166 (675)
T ss_dssp HHHHHHHHTTCSEEECCS-STTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHHHHHHH---HHHTTCCBCCCCCSCCCC
T ss_pred HHHHHHHHhCcCEEEeCC-cccccCHHHHHHHHHcCCceeCCCHHHHHHhchHHHHHHH---HHHcCcCcCCccccCCCC
Confidence 3444433 4679988865 7778999999999999999999999999999999999999 999999999986421111
Q ss_pred ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeE
Q 002207 705 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 784 (953)
Q Consensus 705 ~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~v 784 (953)
.+.+.++.+++ +||+||||..+++|.||.+|++.+||.+ +++.+.... . .. ..++.+
T Consensus 167 ------~~e~~~~a~~i-gyPvvvKp~~G~Gg~Gv~iv~~~~el~~---a~~~~~~ea----~-~~--------fg~~~v 223 (675)
T 3u9t_A 167 ------LETFRREAGRI-GYPVLLKAAAGGGGKGMKVVEREAELAE---ALSSAQREA----K-AA--------FGDARM 223 (675)
T ss_dssp ------TTHHHHHHHHS-CSSBCCBCCC------CCCBCCTTTHHH---HHSCCCC---------------------CCC
T ss_pred ------HHHHHHHHHhC-CCcEEEEECCCCCCccEEEECCHHHHHH---HHHHHHHHH----H-Hh--------cCCCcE
Confidence 12244556788 6999999999999999999999999885 343322110 0 00 014689
Q ss_pred EEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCC-CceeeCceEEEecCCccccccccccCCCceeEcC
Q 002207 785 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 863 (953)
Q Consensus 785 lVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~-~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P 863 (953)
+||+||+|. +|+++.++++.. ..+.+. ... ..+.....| .....|
T Consensus 224 lvEeyI~g~------------------------reiev~v~~d~~G~vv~l~-~rd----~s~qr~~qk-----~ie~~P 269 (675)
T 3u9t_A 224 LVEKYLLKP------------------------RHVEIQVFADRHGHCLYLN-ERD----CSIQRRHQK-----VVEEAP 269 (675)
T ss_dssp BCCBCCSSC------------------------BCEEEEEEECSSSCEEEEE-EEE----CCCBSSSSB-----CEEEES
T ss_pred EEEeecCCC------------------------cEEEEEEEEcCCCCEEEEe-ccc----cceeeccce-----EEEECC
Confidence 999999995 499999998743 332221 110 001111111 233457
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 002207 864 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 943 (953)
Q Consensus 864 ~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~l~~~ 943 (953)
++. +++++.+++.+.+.+++++||+.|++++||+++. +|++||+||||+++.+. .+..++. | .++++.
T Consensus 270 a~~--l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG~~~~iEiNpR~~~~~--~~te~~t---G----vdl~~~ 337 (675)
T 3u9t_A 270 APG--LGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RGQFFFMEMNTRLQVEH--PVTEAIT---G----LDLVAW 337 (675)
T ss_dssp CSS--CCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCT-TSCBCBCEEESSCCTTH--HHHHHTT---T----CCHHHH
T ss_pred CCC--CCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CCCEEEEeccccccCCc--hhhhhhc---C----CCHHHH
Confidence 653 6899999999999999999999999999999985 68999999999998642 2222221 1 256666
Q ss_pred HHHHHh
Q 002207 944 VLDLGS 949 (953)
Q Consensus 944 li~~a~ 949 (953)
+|+.++
T Consensus 338 ~l~~a~ 343 (675)
T 3u9t_A 338 QIRVAR 343 (675)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 666655
No 115
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.84 E-value=4.3e-21 Score=214.22 Aligned_cols=199 Identities=18% Similarity=0.216 Sum_probs=130.2
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhh
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 712 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~ 712 (953)
+.+|+|++..++.......++..|+..|+|++|++..++.+|+||..++++ |+++|||+|++.. .. + +
T Consensus 71 ~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~-~~-~-------~ 138 (331)
T 2pn1_A 71 EGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEY---CLRQGIAHARTYA-TM-A-------S 138 (331)
T ss_dssp HTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHH---HHHHTCCCCCEES-SH-H-------H
T ss_pred cCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHH---HHHcCCCCCcEEe-cH-H-------H
Confidence 568999997655443444567788888999999999999999999999999 8999999999764 11 1 1
Q ss_pred HHHHHH--hhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 713 IWHELT--SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 713 ~~~~~~--~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
+.+.. +.+ +||+||||..+++|.||.++++.+++.. +++. ...+|||+||
T Consensus 139 -~~~~~~~~~~-~~P~vvKp~~g~g~~gv~~v~~~~el~~---~~~~-----------------------~~~~lvee~i 190 (331)
T 2pn1_A 139 -FEEALAAGEV-QLPVFVKPRNGSASIEVRRVETVEEVEQ---LFSK-----------------------NTDLIVQELL 190 (331)
T ss_dssp -HHHHHHTTSS-CSCEEEEESBC-------------------------------------------------CEEEEECC
T ss_pred -hhhhhhcccC-CCCEEEEeCCCCCCCCeEEeCCHHHHHH---HHHh-----------------------CCCeEEEecC
Confidence 22222 467 6999999999999999999999888774 2221 3579999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcC--CCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK--CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~--~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
+|+ |++|.++.+ +|......+..+.. +..|......|.
T Consensus 191 ~G~-------------------------e~~v~~~~d~~~G~~~~~~~~~~~~-----------~~~g~~~~~~~~---- 230 (331)
T 2pn1_A 191 VGQ-------------------------ELGVDAYVDLISGKVTSIFIKEKLT-----------MRAGETDKSRSV---- 230 (331)
T ss_dssp CSE-------------------------EEEEEEEECTTTCCEEEEEEEEEEE-----------EETTEEEEEEEE----
T ss_pred CCc-------------------------EEEEEEEEecCCCeEEEEEEEEEEE-----------ecCCceeEeEEe----
Confidence 997 999999985 45544333322211 112222222221
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCC
Q 002207 869 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 917 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PG 917 (953)
.. +++++.+.+++++||+.|++++||+++ +|++||+|||++++
T Consensus 231 ~~----~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g~~~~iEiN~R~~ 273 (331)
T 2pn1_A 231 LR----DDVFELVEHVLDGSGLVGPLDFDLFDV--AGTLYLSEINPRFG 273 (331)
T ss_dssp CC----HHHHHHHHHHHTTTCCCEEEEEEEEEE--TTEEEEEEEESSCC
T ss_pred cc----HHHHHHHHHHHHHhCCcceEEEEEEEc--CCCEEEEEEeCCCC
Confidence 12 467888999999999999999999964 68999999999643
No 116
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.83 E-value=2.3e-20 Score=237.86 Aligned_cols=222 Identities=16% Similarity=0.209 Sum_probs=124.2
Q ss_pred cCCcEEEEecCCCCCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCch
Q 002207 633 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPI 710 (953)
Q Consensus 633 ~~~dvvf~~~hG~~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~~ 710 (953)
..+|+|++. +|...|+..++.+|+.+|+|++|+++.++.++.||..+|++ |+++|||+|++. .+.+.+
T Consensus 92 ~~iD~V~pg-~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~---l~~~GIPvp~~~~~~v~s~e------ 161 (1165)
T 2qf7_A 92 SGADAIHPG-YGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNL---AISVGVPVVPATEPLPDDMA------ 161 (1165)
T ss_dssp HTCSEEECC-SSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHH---HHHTTCCBC-----------------
T ss_pred hCCCEEEEC-CCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHH---HHHcCCCCCCeeCcCCCCHH------
Confidence 568999887 58888999999999999999999999999999999999999 999999999987 454322
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccc
Q 002207 711 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 790 (953)
Q Consensus 711 ~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI 790 (953)
.+.++.+++ +||+||||..+++|.||.+|++.+||.+ +++.+..... ... .+..++||+||
T Consensus 162 --ea~~~a~~i-gyPvVVKp~~g~GG~Gv~iv~s~eEL~~---a~~~~~~~a~-----~~f--------g~~~vlVEefI 222 (1165)
T 2qf7_A 162 --EVAKMAAAI-GYPVMLKASWGGGGRGMRVIRSEADLAK---EVTEAKREAM-----AAF--------GKDEVYLEKLV 222 (1165)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred --HHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHHHHH-----hhc--------CCCcEEEEEec
Confidence 123344567 6999999999999999999999999886 4444332100 000 14679999999
Q ss_pred cCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCC-ceeeCceEEEecCCccccccccccCCCceeEcCCCCCCC
Q 002207 791 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGS-MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 869 (953)
Q Consensus 791 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~-~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l 869 (953)
+|. +|++|.++++... .+.+.+... .+... .+......|++. +
T Consensus 223 ~gg------------------------~EisV~vl~D~~G~vv~l~~r~~-----s~~r~-----~~~~~e~~Pa~~--l 266 (1165)
T 2qf7_A 223 ERA------------------------RHVESQILGDTHGNVVHLFERDC-----SVQRR-----NQKVVERAPAPY--L 266 (1165)
T ss_dssp SSE------------------------EEEEEEEEECTTSCEEEEEEEEE-----EEEET-----TEEEEEEESCTT--C
T ss_pred cCC------------------------cEEEEEEEEcCCCcEEEEEeecc-----cceec-----ccceEEeccccc--C
Confidence 963 4999999987533 222211100 01111 112344667642 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 919 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt 919 (953)
++++.+++.+.+.+++++||+.|++++||+++.++|++||||||++++.+
T Consensus 267 ~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 267 SEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVE 316 (1165)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCCCEEEEEEEcCCCCC
Confidence 89999999999999999999999999999998336899999999999864
No 117
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.81 E-value=1.4e-18 Score=191.82 Aligned_cols=204 Identities=14% Similarity=0.157 Sum_probs=137.3
Q ss_pred CCcEEEEecCCCCCCc---c-HHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCc
Q 002207 634 NQATVFIAVHGGIGED---G-TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 709 (953)
Q Consensus 634 ~~dvvf~~~hG~~GEd---g-~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~ 709 (953)
.+|+||+..|+..+++ + .+.+.|+.+|+|++ +++.++++|+||..++++ |+ |+|++..+.+.+
T Consensus 79 ~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~---l~----~~P~t~~~~~~~----- 145 (316)
T 1gsa_A 79 DLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWF---SD----LTPETLVTRNKA----- 145 (316)
T ss_dssp GSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGG---TT----TSCCEEEESCHH-----
T ss_pred cCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhh---hh----cCCCeEEeCCHH-----
Confidence 4799999999987752 2 45566678999986 578999999999999998 55 999998876432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeC-CcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEec
Q 002207 710 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC-CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 788 (953)
Q Consensus 710 ~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~-~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEe 788 (953)
.+.++.+++ + |+||||..+++|.||.+++ +.+++.. +++..... ....+|||+
T Consensus 146 ---~~~~~~~~~-~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~---~~~~~~~~------------------~~~~~lvqe 199 (316)
T 1gsa_A 146 ---QLKAFWEKH-S-DIILKPLDGMGGASIFRVKEGDPNLGV---IAETLTEH------------------GTRYCMAQN 199 (316)
T ss_dssp ---HHHHHHHHH-S-SEEEECSSCCTTTTCEEECTTCTTHHH---HHHHHTTT------------------TTSCEEEEE
T ss_pred ---HHHHHHHHc-C-CEEEEECCCCCcccEEEecCChHHHHH---HHHHHHhc------------------CCceEEEec
Confidence 233445567 5 9999999999999999998 8888875 33332111 136799999
Q ss_pred cccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCC
Q 002207 789 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 868 (953)
Q Consensus 789 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~ 868 (953)
||+|.. + .|+++.++++ ..... +..+....+ +|..+++.|.. ..|.+
T Consensus 200 ~i~~~~------------------~----~~~~v~~~~g--~~~~~-~~~r~~~~~---~~~~~~~~gg~--~~~~~--- 246 (316)
T 1gsa_A 200 YLPAIK------------------D----GDKRVLVVDG--EPVPY-CLARIPQGG---ETRGNLAAGGR--GEPRP--- 246 (316)
T ss_dssp CCGGGG------------------G----CEEEEEEETT--EECSE-EEEEECCSS---CSCCCGGGTCE--EEEEE---
T ss_pred ccCCCC------------------C----CCEEEEEECC--EEeee-EEEEeCCCC---CceeEEccCCc--cccCC---
Confidence 999720 0 3888888753 22110 222222122 34445554433 23444
Q ss_pred CCHHHHHHHHHHHHHHHHH---cCCcceEEEEEEEEcCCCcEEEEeeCCC--CCCCC
Q 002207 869 MSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTV--PGMTP 920 (953)
Q Consensus 869 l~~~~~~~i~~~a~~~~~a---Lg~~G~ariDf~v~~~~g~~~viEINt~--PGlt~ 920 (953)
++++ +++.+.+++++ +|+ ++++|||+ |. ||+|||++ ||++.
T Consensus 247 ~~~~----~~~~a~~~~~~l~~~g~-~~~~vD~~-----g~-~~iEvN~r~~~~~~~ 292 (316)
T 1gsa_A 247 LTES----DWKIARQIGPTLKEKGL-IFVGLDII-----GD-RLTEINVTSPTCIRE 292 (316)
T ss_dssp CCHH----HHHHHHHHHHHHHHTTC-CEEEEEEE-----TT-EEEEEECSSCCCHHH
T ss_pred CCHH----HHHHHHHHHHHHHhCCC-cEEEEEec-----CC-EEEEEcCCCCcchHH
Confidence 3443 44555555554 687 58999987 44 89999995 57654
No 118
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.76 E-value=4.6e-18 Score=207.66 Aligned_cols=202 Identities=13% Similarity=0.119 Sum_probs=134.0
Q ss_pred ECCCHHHHHHhc-cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeC--
Q 002207 193 VGTGSRACRQAF-DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY-- 269 (953)
Q Consensus 193 vGs~~~a~~i~~-DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~-- 269 (953)
+|+++.++.+++ ||..+|++|+++|||||++..+.+.+.. .+++. ...+||+||||..+++|+||.+++
T Consensus 471 tg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~~ea----~~~~~----~~~g~PvVVKP~~G~~G~GV~iv~~~ 542 (750)
T 3ln6_A 471 TSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDRKEA----LNYFS----QIQDKPIVVKPKSTNFGLGISIFKTS 542 (750)
T ss_dssp CTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETTTTH----HHHHH----HSSSSCEEEEETTCCSSSSCEEESSC
T ss_pred eCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCHHHH----HHHHH----HhcCCcEEEEeCCCCCCCCEEEEeCC
Confidence 577777777776 9999999999999999999988765432 12221 126789999999999999999998
Q ss_pred -CHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEE---eccCccc-----------
Q 002207 270 -GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL---QFQGSVD----------- 334 (953)
Q Consensus 270 -~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~---~~~~~~~----------- 334 (953)
+.+++.+++..++. ++..+|||+||+| +|++|.|++ +. ++.+.++.. ..+|..+
T Consensus 543 ~s~eel~~a~~~~~~--~~~~vlVEefI~G-~E~~v~Vvg----g~----vvaa~~r~p~~v~GdG~~tI~eLI~~~n~d 611 (750)
T 3ln6_A 543 ANLASYEKAIDIAFT--EDSAILVEEYIEG-TEYRFFVLE----GD----CIAVLLRVAANVVGDGIHTISQLVKLKNQN 611 (750)
T ss_dssp CCHHHHHHHHHHHHH--HCSEEEEEECCCS-EEEEEEEET----TE----EEEEEEEECCEEECCTTCCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHh--hCCcEEEEeccCC-CEEEEEEEC----CE----EEEEEEEecceEecCCccCHHHHHHhhccC
Confidence 88888777665543 4679999999997 999999994 22 222222221 0111100
Q ss_pred ---------------------------------cccCCc--ccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHH
Q 002207 335 ---------------------------------VREKDA--IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 379 (953)
Q Consensus 335 ---------------------------------~~~~~~--~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~ 379 (953)
+.+.++ +..+.++...|+ ....+...+++ +++++|.++++
T Consensus 612 p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg-~~~d~td~i~p----~~~~~a~~aa~ 686 (750)
T 3ln6_A 612 PLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGG-DSIDVTNTMDP----TYKQLAAEMAE 686 (750)
T ss_dssp TTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTC-EEEECTTTSCH----HHHHHHHHHHH
T ss_pred ccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCC-ceeeccccCCH----HHHHHHHHHHH
Confidence 000000 112334444444 33333333444 55899999999
Q ss_pred HhCCCCeeEeeeeecCCCCccccccccccCc-ccCCcEEEEeecCCCCCCC
Q 002207 380 RLGLCDFARIDGWFLPSSTHVFSSSETKYGS-TEWGTILFTDINLISGMEQ 429 (953)
Q Consensus 380 aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~-~~dG~~~~lEIN~~PG~t~ 429 (953)
++|+. +++||+++.+.+ .. . .+.|.+.|+|||..||+..
T Consensus 687 ~igl~-~~GvDli~~di~--------~~--~~~~~~~~~iiEvN~~pg~~~ 726 (750)
T 3ln6_A 687 AMGAW-VCGVDLIIPNAT--------QA--YSKDKKNATCIELNFNPLMYM 726 (750)
T ss_dssp HHTCS-SCEEEEEESCSS--------SC--CCTTTTCCEEEEEESSCCCHH
T ss_pred HhCCC-eEEEEEEecCcc--------cc--ccccCCCeEEEEEcCCcchhh
Confidence 99987 999999862100 00 0 1245689999999999753
No 119
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.76 E-value=5.3e-19 Score=195.51 Aligned_cols=292 Identities=13% Similarity=0.044 Sum_probs=172.7
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchhHH
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSEFA 157 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (953)
|+|++|.|| + |+.++.++++.||+|++++-+.+...+ ++. ..+|-....... .+
T Consensus 3 ~~I~~lGsg-l---------~~~~~~aAk~lG~~viv~d~~~~~p~~---~a~----~~ad~~~~~~~~-------~d-- 56 (320)
T 2pbz_A 3 LIVSTIASH-S---------SLQILLGAKKEGFKTRLYVSPKRRPFY---SSL----PIVDDLVVAEEM-------TS-- 56 (320)
T ss_dssp -CEEEESST-T---------HHHHHHHHHHTTCCEEEEECTTTHHHH---HTC----TTCSEEEECSCS-------CC--
T ss_pred eEEEEEcCH-h---------HHHHHHHHHHCCCEEEEEECCCCCccc---hhh----hcCCeEEECCcH-------HH--
Confidence 689999999 5 888999999999999977654321000 000 000100000000 00
Q ss_pred HhhccCcCEEEEcCCCCCCCchHH--HHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhh
Q 002207 158 EHLAANVDIVFPTIHGRFGEDGGI--QEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESE 235 (953)
Q Consensus 158 ~~~~~~~D~vf~~lhG~~GEdg~i--q~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~ 235 (953)
+.+..|++.|.. |+-.. -..||.+++|+.++ ..+...++||...+++|+++|||+|+++. .++
T Consensus 57 --l~~~~dvitpe~-----e~v~~~~l~~le~~~~p~~p~-~~~l~~~~dr~~~~~~l~~~Gip~P~~~~---~ee---- 121 (320)
T 2pbz_A 57 --ILNDDGIVVPHG-----SFVAYLGIEAIEKAKARFFGN-RRFLKWETTFELQDKALEGAGIPRVEVVE---PED---- 121 (320)
T ss_dssp --TTCCSSBCCCBT-----THHHHSCHHHHHTCCSCCBSC-SSGGGGGSCHHHHHHHHHHHTCCBCCBCC---SCC----
T ss_pred --HHhcCCEEEecc-----cchhHHHHHHHHHcCCCcCCC-HHHHHHHHhHHHHHHHHHHCCcCCCCeeC---HhH----
Confidence 122457765332 22111 12357899998765 57788999999999999999999999872 111
Q ss_pred hhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCCCCcc
Q 002207 236 LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDC 315 (953)
Q Consensus 236 ~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~ 315 (953)
+ .++||+||||..+++|+|++++++ +|+..+.... +.+++|||||+| .+++..++-.-- .+
T Consensus 122 ~----------~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~-----~~~~IiEEfI~g-~~~~~~~f~~~~--~g 182 (320)
T 2pbz_A 122 A----------KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTL-----EEPYRVERFIPG-VYLYVHFFYSPI--LE 182 (320)
T ss_dssp C----------CSSCCEEEECC------------C-EECSCCCC---------CCEEEECCCS-CEEEEEEEEETT--TT
T ss_pred c----------CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhc-----CCCEEEEeeece-EecceeEEeccc--cC
Confidence 1 257899999999999999999999 8864322111 257999999997 888744432100 11
Q ss_pred ccEEecc-eEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh------CCCCeeE
Q 002207 316 HPVVLLP-TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL------GLCDFAR 388 (953)
Q Consensus 316 ~~v~l~~-~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL------g~~G~ar 388 (953)
++..+.+ .+++. .++.++.. ...+.....-..|+.+++++.+++++++.++.++| |+.|...
T Consensus 183 ~~e~~~~~~r~e~----------~~g~~~~p-~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~ 251 (320)
T 2pbz_A 183 RLELLGVDERVLI----------ADGNARWP-VKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFA 251 (320)
T ss_dssp EEEEEEEEEEEET----------TCSSSSSC-CSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEE
T ss_pred ceeEEEecceEEE----------ECCeeecc-cCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEE
Confidence 1222122 11111 12222110 00111101112388889999999999999999999 9999999
Q ss_pred eeeeecCCCCccccccccccCcccCCcEEEEeecCCCCC-CC-cchHHHHHHHhCCCHHHHHHHHHHHHhhhC
Q 002207 389 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM-EQ-TSFLFQQASKVGFSHSNILRTIIGHACSRF 459 (953)
Q Consensus 389 VDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~-t~-~S~~p~~a~~~G~s~~~ll~~li~~a~~r~ 459 (953)
|| + ++||++||+||||+||- |. .|-|..+..-.++|..+-+.+=|+.|+++-
T Consensus 252 vE-~------------------~~dg~~~v~EIapR~~GGt~~~~~y~~~~~~~~~~~g~r~~~e~~~~~~~~ 305 (320)
T 2pbz_A 252 LH-F------------------AYDGSFKAIGIASRIDGGSNADHWYSELYWGERLSMGRRIARELRLAEEED 305 (320)
T ss_dssp EE-E------------------ECSSSCEEEEEESSBCSGGGSCCCCHHHHSSSCCCHHHHHHHHHHHHHTTT
T ss_pred EE-E------------------cCCCcEEEEEecCCCCCCCCccCCceeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 99 4 46788999999999653 11 144555555678998888888888888763
No 120
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.71 E-value=5.3e-17 Score=198.28 Aligned_cols=189 Identities=18% Similarity=0.165 Sum_probs=133.0
Q ss_pred eCCChHHHHHhc-ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEe
Q 002207 664 TGPGVMASKTCM-DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 742 (953)
Q Consensus 664 ~G~~~~as~l~~-DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v 742 (953)
+|++..++.+++ ||..+|++ |+++|||||++..+.+.+ +..+.+...+ +||+||||..+++|.||.++
T Consensus 471 tg~~~~~a~~~~~DK~~tk~l---L~~~GIPvP~~~~~~~~~-------ea~~~~~~~~-g~PvVVKP~~G~~G~GV~iv 539 (750)
T 3ln6_A 471 TSKDNYIVPLAMANKVVTKKI---LDEKHFPTPFGDEFTDRK-------EALNYFSQIQ-DKPIVVKPKSTNFGLGISIF 539 (750)
T ss_dssp CTTSCTHHHHHTTTSHHHHHH---HHHTTCCCCCCCCEETTT-------THHHHHHHSS-SSCEEEEETTCCSSSSCEEE
T ss_pred eCCCHHHHHHHHhCHHHHHHH---HHHCCcCCCCEEEECCHH-------HHHHHHHHhc-CCcEEEEeCCCCCCCCEEEE
Confidence 788888888887 99999999 999999999999887643 1222233567 69999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEE
Q 002207 743 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITV 822 (953)
Q Consensus 743 ~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv 822 (953)
++..+.+++.++++.++.+ +..+|||+||+|+ |++|
T Consensus 540 ~~~~s~eel~~a~~~~~~~-------------------~~~vlVEefI~G~-------------------------E~~v 575 (750)
T 3ln6_A 540 KTSANLASYEKAIDIAFTE-------------------DSAILVEEYIEGT-------------------------EYRF 575 (750)
T ss_dssp SSCCCHHHHHHHHHHHHHH-------------------CSEEEEEECCCSE-------------------------EEEE
T ss_pred eCCCCHHHHHHHHHHHHhh-------------------CCcEEEEeccCCC-------------------------EEEE
Confidence 8433344444577776655 5789999999997 8888
Q ss_pred EEEcCCCCceeeCceEEEecC----Cccc---------------------------------------------------
Q 002207 823 GVIGKCGSMHSLMPSVTVKES----GDIL--------------------------------------------------- 847 (953)
Q Consensus 823 ~vl~~~~~~~~~~p~~~i~~~----~~~~--------------------------------------------------- 847 (953)
.|+++. +++.++..+. .+..
T Consensus 576 ~Vvgg~-----vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge 650 (750)
T 3ln6_A 576 FVLEGD-----CIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGT 650 (750)
T ss_dssp EEETTE-----EEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTC
T ss_pred EEECCE-----EEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCC
Confidence 888753 2222222110 0000
Q ss_pred ----cccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEc-------CCCcEEEEeeCCCC
Q 002207 848 ----SLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV-------DNGEVLIIEVNTVP 916 (953)
Q Consensus 848 ----d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~-------~~g~~~viEINt~P 916 (953)
.+.+....|+.. . ++++++..+++++|.++++++|+. +++||++... +.|..+|||||..|
T Consensus 651 ~v~L~~~~Nls~Gg~~--~-----d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiEvN~~p 722 (750)
T 3ln6_A 651 KIELRRNSNISTGGDS--I-----DVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIELNFNP 722 (750)
T ss_dssp EEESCSSCCTTTTCEE--E-----ECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEEEESSC
T ss_pred EEEEeecccccCCCce--e-----eccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEEEcCCc
Confidence 001111111111 1 123455678899999999999988 9999999863 24567999999999
Q ss_pred CCCC
Q 002207 917 GMTP 920 (953)
Q Consensus 917 Glt~ 920 (953)
|+.-
T Consensus 723 g~~~ 726 (750)
T 3ln6_A 723 LMYM 726 (750)
T ss_dssp CCHH
T ss_pred chhh
Confidence 9954
No 121
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.71 E-value=2.8e-17 Score=200.18 Aligned_cols=228 Identities=14% Similarity=0.054 Sum_probs=142.9
Q ss_pred ccCcCEEEEcCCCCCCCchHHHHHHHcCCccEE-------CCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccch
Q 002207 161 AANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFV-------GTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNE 233 (953)
Q Consensus 161 ~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyv-------Gs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~ 233 (953)
...+|++|..-.+. +..+...-++.|+ |++..+..++.||..+|++|+++|||||++..+.+.+.
T Consensus 444 ~~gid~~vlg~e~~------l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~~~~~~~e-- 515 (757)
T 3ln7_A 444 QKGIHTEILDENDQ------FLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSLEK-- 515 (757)
T ss_dssp HHTCEEEEEETTTT------EEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCEEEESCHHH--
T ss_pred HhCCCEEEECCCHH------HHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCEEEECCHHH--
Confidence 45899997643332 2112223333444 33446666666999999999999999999998876432
Q ss_pred hhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEe----CCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEe
Q 002207 234 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA----YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 309 (953)
Q Consensus 234 ~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v----~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~ 309 (953)
+.+.+. ...+||+||||..+++|+||.++ ++.+++.++...++. ++..+|||+||+| +|++|.|++
T Consensus 516 --a~~~~~----~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~--~~~~vlVEefI~G-~Ei~v~Vlg- 585 (757)
T 3ln7_A 516 --AVASYA----LFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFR--EDKEVMVEDYLVG-TEYRFFVLG- 585 (757)
T ss_dssp --HHHGGG----GSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHH--HCSSEEEEECCCS-EEEEEEEET-
T ss_pred --HHHHHH----HhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHh--cCCcEEEEEcCCC-cEEEEEEEC-
Confidence 212221 23688999999999999999999 789887766655443 4678999999998 999999994
Q ss_pred CCCCccccEEecceEEEE---eccCcc--------------------------------------------ccccCCc--
Q 002207 310 GSGFDCHPVVLLPTEVEL---QFQGSV--------------------------------------------DVREKDA-- 340 (953)
Q Consensus 310 ~~g~~~~~v~l~~~ei~~---~~~~~~--------------------------------------------~~~~~~~-- 340 (953)
+. ++ ...++.. ..+|.. ++.+.++
T Consensus 586 ---gk--vv--aai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v 658 (757)
T 3ln7_A 586 ---DE--TL--AVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLV 658 (757)
T ss_dssp ---TE--EE--EEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEE
T ss_pred ---CE--EE--EEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEE
Confidence 22 22 1211110 011100 0000111
Q ss_pred ccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEe
Q 002207 341 IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 420 (953)
Q Consensus 341 ~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lE 420 (953)
+..+.++...|+ ....+ ++++...++++|.++++++|+. +++||+++.+.+ ..+. .+.+.+.|+|
T Consensus 659 ~L~~~~Nls~GG-~~~dv----td~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~--------~p~~-~~~~~~~iiE 723 (757)
T 3ln7_A 659 QLRANSNISTGG-DSIDM----TDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLK--------QPAT-PNLTSWGVIE 723 (757)
T ss_dssp ECCSSCCGGGTC-CEEEC----TTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSS--------SCCC-SSTTTCEEEE
T ss_pred EeecccccccCc-cceec----cccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCcc--------cccc-ccCCCeEEEE
Confidence 122344454444 22222 3334445589999999999996 999999862100 0000 0234688999
Q ss_pred ecCCCCCC
Q 002207 421 INLISGME 428 (953)
Q Consensus 421 IN~~PG~t 428 (953)
||..||+.
T Consensus 724 vN~~P~~~ 731 (757)
T 3ln7_A 724 ANFNPMMM 731 (757)
T ss_dssp EESSCCHH
T ss_pred EcCCcchh
Confidence 99999965
No 122
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.69 E-value=4.3e-16 Score=171.02 Aligned_cols=207 Identities=12% Similarity=0.023 Sum_probs=145.6
Q ss_pred CcCEEEEcCCCCCC---C-chHHHHHHHcCCccEECCCHHHHHHhccH----HHHHHHHHHCCC---CCCCeEEecCCcc
Q 002207 163 NVDIVFPTIHGRFG---E-DGGIQEVLEKYNVPFVGTGSRACRQAFDK----YDASLEMSKQGF---ITVPSFLLQGSEV 231 (953)
Q Consensus 163 ~~D~vf~~lhG~~G---E-dg~iq~lle~~gIpyvGs~~~a~~i~~DK----~~~k~~l~~~Gi---ptp~~~~~~~~~~ 231 (953)
.+|+||+..+.... . ...+-..||.+|+|.+ +++.++..|.|| ..+.++|+++|+ |.++........
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~~~- 145 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHR- 145 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGG-
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCChh-
Confidence 68999999866542 1 2455567999999987 679999999999 567788889988 865554443211
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+. +...+||+||||..|..|.||.++++.+++...+..... ....+++||||+.++++.|.|++
T Consensus 146 ------~~-----~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~--~~~~~~vQefI~~g~DiRv~VvG--- 209 (309)
T 1i7n_A 146 ------EM-----LTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVAL--TQTYATAEPFIDAKYDIRVQKIG--- 209 (309)
T ss_dssp ------GG-----SSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHH--HTCCEEEEECCCEEEEEEEEEET---
T ss_pred ------hh-----hhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhc--cCCeEEEEeecCCCceEEEEEEC---
Confidence 11 123678999999999999999999999987655543222 24568899999877999999994
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+. +++ -+.... .+ +|+.+.. ++ ... |..++++ +++.|.++.+++|--+++.||+
T Consensus 210 -g~--v~a----~~Rr~~--------~g---~wrtN~~-~~-~~e--~~~l~~e----~~~la~~A~~a~gGldi~GVDl 263 (309)
T 1i7n_A 210 -NN--YKA----YMRTSI--------SG---NWKTNTG-SA-MLE--QIAMSDR----YKLWVDACSEMFGGLDICAVKA 263 (309)
T ss_dssp -TE--EEE----EEEESS--------CT---TTSCSCC-CS-SEE--EECCCHH----HHHHHHHHTTGGGCCSEEEEEE
T ss_pred -CE--EEE----EEEEcC--------CC---CCeecCC-cc-eee--ecCCCHH----HHHHHHHHHHHhCCCCEEEEEE
Confidence 32 222 111110 11 2344432 22 222 2245655 4789999999995457999997
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecC--CCCCCCc
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINL--ISGMEQT 430 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~--~PG~t~~ 430 (953)
+. +++|.++|+|||. +||+..+
T Consensus 264 l~-----------------~~~g~~~V~EVN~~~~P~~~~~ 287 (309)
T 1i7n_A 264 VH-----------------GKDGKDYIFEVMDCSMPLIGEH 287 (309)
T ss_dssp EE-----------------ETTSCEEEEEEECTTCCCCSSC
T ss_pred EE-----------------cCCCCEEEEEECCCCCCCccch
Confidence 64 5788899999999 9998743
No 123
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.69 E-value=6.9e-16 Score=173.78 Aligned_cols=231 Identities=12% Similarity=0.068 Sum_probs=145.8
Q ss_pred HHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCC
Q 002207 653 QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 732 (953)
Q Consensus 653 q~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~ 732 (953)
..+++..|+|..| +..+..+..||..+|++ |+++|||||++ +.+. +.+ .+|+||||..
T Consensus 102 ~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~---l~~~GIptp~~--~~~~---------------~e~-~~PvVVK~~~ 159 (361)
T 2r7k_A 102 DNVENSFLVPMFG-NRRILRWESERSLEGKL---LREAGLRVPKK--YESP---------------EDI-DGTVIVKFPG 159 (361)
T ss_dssp HHHHHTCCSCBBS-CGGGGGTTTCHHHHHHH---HHHTTCCCCCE--ESSG---------------GGC-CSCEEEECSC
T ss_pred HHHHHHcCCCcCC-CHHHHHHhhhHHHHHHH---HHHcCcCCCCE--eCCH---------------HHc-CCCEEEeeCC
Confidence 3445589999988 77888999999999988 99999999975 3321 133 5899999999
Q ss_pred CCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhc
Q 002207 733 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 812 (953)
Q Consensus 733 ~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~ 812 (953)
+++|+||+++++.+|+.+ +++..+.. +.+.... ...+||||||+|.
T Consensus 160 ~a~GkGv~v~~s~ee~~~---a~~~~~~~---~~~~~~~---------~~~viIEEfl~G~------------------- 205 (361)
T 2r7k_A 160 ARGGRGYFIASSTEEFYK---KAEDLKKR---GILTDED---------IANAHIEEYVVGT------------------- 205 (361)
T ss_dssp CCC---EEEESSHHHHHH---HHHHHHHT---TSCCHHH---------HHHCEEEECCCSE-------------------
T ss_pred CCCCCCEEEECCHHHHHH---HHHHHHhc---cccccCC---------CCeEEEEeccceE-------------------
Confidence 999999999999999875 55554321 0000000 1469999999997
Q ss_pred CCCceeEEEEEEEcC--CCCceeeCceEEEe-cCCccccccc--ccc--CCCceeEc---CCCCCCCCHHHHHHHHHHHH
Q 002207 813 GNSRWVEITVGVIGK--CGSMHSLMPSVTVK-ESGDILSLEE--KFQ--GGTGINLT---PPPASIMSTEALDKCKQRIE 882 (953)
Q Consensus 813 g~~~~~Eitv~vl~~--~~~~~~~~p~~~i~-~~~~~~d~~~--Ky~--~g~~~~~~---P~~~~~l~~~~~~~i~~~a~ 882 (953)
|+++.++.. .+....+....++. ...+++.+-. ++. ........ |+. +++++.++++++++
T Consensus 206 ------e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~---l~~~~~~~a~~~a~ 276 (361)
T 2r7k_A 206 ------NFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVV---IRESLLPQVFEMGD 276 (361)
T ss_dssp ------EEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECC---CCGGGHHHHHHHHH
T ss_pred ------EeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceEEecCcCCc---CCHHHHHHHHHHHH
Confidence 554222211 11111111111110 0111221100 000 01112223 766 67889999999999
Q ss_pred HHHHHc------CCcceEEEEEEEEcCCCcEEEEeeCCCCCCC-C----CchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 883 LIANAL------QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-P----STVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 883 ~~~~aL------g~~G~ariDf~v~~~~g~~~viEINt~PGlt-~----~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
++.++| ++.|...+|||++. +|+++|+|||++||=. + .|.+.+..... +|++-.-+.+=|++|+++
T Consensus 277 ~v~~al~~~~~~~~~G~~~vE~fvt~-dg~i~V~EIapR~gGg~~~~~~g~p~~~l~~~~--~~~~g~r~~~e~~~~~~~ 353 (361)
T 2r7k_A 277 KLVAKAKELVPPGMIGPFCLQSLCNE-NLELVVFEMSARVDGGTNSFMNGGPYSFLYNGE--PLSMGQRIAREIKMALQL 353 (361)
T ss_dssp HHHHHHHHHSTTCCCEEEEEEEEECT-TSCEEEEEEESSBCGGGGGGTTCCTTHHHHHSS--CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCccceEEEEEEEcC-CCCEEEEEEcCCCCCCcccccCCCCchheeecC--CCCHHHHHHHHHHHHHHh
Confidence 999999 89999999999985 6899999999988864 1 23333433322 456556666667777753
No 124
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.68 E-value=1.2e-16 Score=194.67 Aligned_cols=221 Identities=17% Similarity=0.152 Sum_probs=144.9
Q ss_pred cChHHHHHHh-hcCCcEEEEecCCCCCCccHHHHHHHHc-------CCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCC
Q 002207 622 HSINEWIKLA-KENQATVFIAVHGGIGEDGTLQSLLEAE-------GVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 693 (953)
Q Consensus 622 ~~~~~~~~~~-~~~~dvvf~~~hG~~GEdg~iq~llE~~-------gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIp 693 (953)
.+....++.+ +..+|++|+- +++.+..+.... |++..|++..+..++.||..+|++ |+++|||
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg------~e~~l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~l---L~~~GIP 503 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILD------ENDQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKV---LQKAGFN 503 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE------TTTTEEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHH---HHHHTCC
T ss_pred CCHHHHHHHHHHhCCCEEEEC------CCHHHHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHH---HHHCCcC
Confidence 3444555553 3568888753 333221122222 333333444566666699999999 9999999
Q ss_pred ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEe----CCcccHHHHHHHHHHHHhhCCCCCccc
Q 002207 694 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL----CCAEDLTVYVKALEECLLRIPPNSFSR 769 (953)
Q Consensus 694 tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v----~~~~eL~~~~~al~~a~~~~~~~~~~~ 769 (953)
||++..+.+.+ +.++.+.+.+ +||+||||..+++|+||.++ .+.+++.. +++.++..
T Consensus 504 vP~~~~~~~~~-------ea~~~~~~~~-g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~---al~~a~~~-------- 564 (757)
T 3ln7_A 504 VPQSVEFTSLE-------KAVASYALFE-NRAVVIKPKSTNYGLGITIFQQGVQNREDFAK---ALEIAFRE-------- 564 (757)
T ss_dssp CCCEEEESCHH-------HHHHGGGGSS-SSCEEEEESSCSTTTTCEECSSCCCCHHHHHH---HHHHHHHH--------
T ss_pred CCCEEEECCHH-------HHHHHHHHhc-CCCEEEEeCCCCCCCCeEEecCCCCCHHHHHH---HHHHHHhc--------
Confidence 99999886532 2222222567 69999999999999999999 67777664 67766654
Q ss_pred ccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCC-----
Q 002207 770 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG----- 844 (953)
Q Consensus 770 ~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~----- 844 (953)
+..+|||+||+|+ |++|.|+++. +++.++..+..
T Consensus 565 -----------~~~vlVEefI~G~-------------------------Ei~v~Vlggk-----vvaai~R~p~~VvGDG 603 (757)
T 3ln7_A 565 -----------DKEVMVEDYLVGT-------------------------EYRFFVLGDE-----TLAVLLRVPANVVGDS 603 (757)
T ss_dssp -----------CSSEEEEECCCSE-------------------------EEEEEEETTE-----EEEEEEECCSEEEGGG
T ss_pred -----------CCcEEEEEcCCCc-------------------------EEEEEEECCE-----EEEEEEEecccccCCC
Confidence 5789999999997 8888888753 22333322110
Q ss_pred -------------c-----------------------------------------ccccccccc-CCCceeEcCCCCCCC
Q 002207 845 -------------D-----------------------------------------ILSLEEKFQ-GGTGINLTPPPASIM 869 (953)
Q Consensus 845 -------------~-----------------------------------------~~d~~~Ky~-~g~~~~~~P~~~~~l 869 (953)
+ ++.+.+... +|... ++
T Consensus 604 ~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~--------dv 675 (757)
T 3ln7_A 604 VHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSI--------DM 675 (757)
T ss_dssp CCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEE--------EC
T ss_pred cccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeecccccccCccce--------ec
Confidence 0 000111111 11111 13
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEc-------CCCcEEEEeeCCCCCCCC
Q 002207 870 STEALDKCKQRIELIANALQLEGFSRIDAFVNV-------DNGEVLIIEVNTVPGMTP 920 (953)
Q Consensus 870 ~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~-------~~g~~~viEINt~PGlt~ 920 (953)
++++..+++++|.++++++|+. +++||+++.. +.+.+.|+|||..||+.-
T Consensus 676 td~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~~ 732 (757)
T 3ln7_A 676 TDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMM 732 (757)
T ss_dssp TTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCccccccccCCCeEEEEEcCCcchhh
Confidence 3455678899999999999997 9999999862 235678999999999754
No 125
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.66 E-value=2.3e-15 Score=169.72 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=145.3
Q ss_pred CcCEEEEcCCCCCC-C---chHHHHHHHcCCccEECCCHHHHHHhccH----HHHHHHHHHCCC---CCCCeEEecCCcc
Q 002207 163 NVDIVFPTIHGRFG-E---DGGIQEVLEKYNVPFVGTGSRACRQAFDK----YDASLEMSKQGF---ITVPSFLLQGSEV 231 (953)
Q Consensus 163 ~~D~vf~~lhG~~G-E---dg~iq~lle~~gIpyvGs~~~a~~i~~DK----~~~k~~l~~~Gi---ptp~~~~~~~~~~ 231 (953)
.+|+||+..+.... + ...+-..||.+|+|.+ +++.++..|.|| ..+.++|+++|+ |.++........
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~~~- 257 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHK- 257 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGG-
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecCchh-
Confidence 68999999866442 1 2455667999999987 679999999999 556778889988 855554443211
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+. +...+||+||||..|..|+||.++++.+++...+..... ....++|||||+.++++.|.|++
T Consensus 258 ------~~-----i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~--~~~~~~vQEfI~~g~DIRv~VVG--- 321 (422)
T 1pk8_A 258 ------EM-----LSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVAL--TKTYATAEPFIDAKYDVRVQKIG--- 321 (422)
T ss_dssp ------GC-----CCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHH--HTSCEEEEECCCEEEEEEEEEET---
T ss_pred ------hh-----hhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhc--cCceEEEEeecCCCceEEEEEEC---
Confidence 11 123678999999999999999999999987765543322 23568899999877999999994
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
++ +++ -+.... .+ +|+.+.. + ....+..++++ ++++|.++.+++|--+++.||+
T Consensus 322 -g~--vva----~~Rr~~--------~g---~WrtNvg-~---g~~e~i~lt~e----~~elA~kAaka~gGldiaGVDl 375 (422)
T 1pk8_A 322 -QN--YKA----YMRTSV--------SG---NWKTNTG-S---AMLEQIAMSDR----YKLWVDTCSEIFGGLDICAVEA 375 (422)
T ss_dssp -TE--EEE----EEEEES--------SS---CSSTTSS-C---EEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEE
T ss_pred -CE--EEE----EEEEcC--------CC---CceeccC-c---eeeeeeCCCHH----HHHHHHHHHHHhCCCCEEEEEE
Confidence 32 222 111110 11 2444432 2 12223346665 4899999999994346999997
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecC--CCCCCCc
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINL--ISGMEQT 430 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~--~PG~t~~ 430 (953)
+. +++|.+||+|||. +|++..+
T Consensus 376 L~-----------------s~dG~~~VlEVN~s~~P~~~g~ 399 (422)
T 1pk8_A 376 LH-----------------GKDGRDHIIEVVGSSMPLIGDH 399 (422)
T ss_dssp EE-----------------ETTSCEEEEEEECTTCCCCTTC
T ss_pred EE-----------------cCCCCEEEEEECCCCCCCccch
Confidence 64 5788899999999 9998743
No 126
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.65 E-value=4.9e-15 Score=162.61 Aligned_cols=207 Identities=16% Similarity=0.137 Sum_probs=143.7
Q ss_pred CCcEEEEecCCCCC---C-ccHHHHHHHHcCCCEeCCChHHHHHhcChH----HHHHHHHHHHHCCC---CccCeEEEeC
Q 002207 634 NQATVFIAVHGGIG---E-DGTLQSLLEAEGVPYTGPGVMASKTCMDKV----ATSLALNHLADLGV---LTINKDVRRK 702 (953)
Q Consensus 634 ~~dvvf~~~hG~~G---E-dg~iq~llE~~gIPy~G~~~~as~l~~DK~----~tk~~~~~l~~~GI---ptp~~~~v~~ 702 (953)
.+|+||+-.+.... . ...+-..||.+|+|.+ +++.+...|.||. .+.++ |+++|+ |.++......
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~---l~~~gi~~~P~~~~~~~~~ 143 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAI---FKTLGGEKFPLIEQTYYPN 143 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHH---HHHHCTTTSCBCCCEEESS
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHH---HHhCCCCCCCCCCEEeeCC
Confidence 47999998876542 2 1355567899999987 5678999999993 44444 788888 8555544422
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
. .+ +.+.+ +||+|+||..+..+.||.++++.++++.+.+++... ..
T Consensus 144 ~-------~~----~~~~~-g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~----------------------~~ 189 (309)
T 1i7n_A 144 H-------RE----MLTLP-TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT----------------------QT 189 (309)
T ss_dssp G-------GG----GSSCC-CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH----------------------TC
T ss_pred h-------hh----hhhcc-CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc----------------------CC
Confidence 1 11 23456 699999999999999999999999988654333221 35
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
.+++||||+.. +++.|.|+|+. +...++...+++| ..... +.....+
T Consensus 190 ~~~vQefI~~g------------------------~DiRv~VvGg~-----v~a~~Rr~~~g~w---rtN~~-~~~~e~~ 236 (309)
T 1i7n_A 190 YATAEPFIDAK------------------------YDIRVQKIGNN-----YKAYMRTSISGNW---KTNTG-SAMLEQI 236 (309)
T ss_dssp CEEEEECCCEE------------------------EEEEEEEETTE-----EEEEEEESSCTTT---SCSCC-CSSEEEE
T ss_pred eEEEEeecCCC------------------------ceEEEEEECCE-----EEEEEEEcCCCCC---eecCC-cceeeec
Confidence 68899999843 59999999875 2223333223333 33332 2222223
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC--CCCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT--VPGMTPS 921 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt--~PGlt~~ 921 (953)
|. ++ +.+++|.++.+++|.-+++.||++.+. +|.+||+|||. +||+...
T Consensus 237 ~l-----~~----e~~~la~~A~~a~gGldi~GVDll~~~-~g~~~V~EVN~~~~P~~~~~ 287 (309)
T 1i7n_A 237 AM-----SD----RYKLWVDACSEMFGGLDICAVKAVHGK-DGKDYIFEVMDCSMPLIGEH 287 (309)
T ss_dssp CC-----CH----HHHHHHHHHTTGGGCCSEEEEEEEEET-TSCEEEEEEECTTCCCCSSC
T ss_pred CC-----CH----HHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCEEEEEECCCCCCCccch
Confidence 32 33 468899999999954569999988874 68899999999 9999743
No 127
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.65 E-value=2.3e-15 Score=167.09 Aligned_cols=206 Identities=12% Similarity=0.047 Sum_probs=144.6
Q ss_pred CcCEEEEcCCCCCC---C-chHHHHHHHcCCccEECCCHHHHHHhccH----HHHHHHHHHCCC---CCCCeEEecCCcc
Q 002207 163 NVDIVFPTIHGRFG---E-DGGIQEVLEKYNVPFVGTGSRACRQAFDK----YDASLEMSKQGF---ITVPSFLLQGSEV 231 (953)
Q Consensus 163 ~~D~vf~~lhG~~G---E-dg~iq~lle~~gIpyvGs~~~a~~i~~DK----~~~k~~l~~~Gi---ptp~~~~~~~~~~ 231 (953)
.+|+||+..+...- + ...+-..||.+|+|.+ +++.++..|.|| ..+.++|+++|+ |.++........
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~~~- 162 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHK- 162 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESSST-
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCchh-
Confidence 68999999876321 1 1355567999999987 679999999999 667788899888 855554443211
Q ss_pred chhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 232 NESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
+. ++..+||+||||..|..|+||.++++.+++...+..... ....+++||||+.++++.|.|++
T Consensus 163 ------~~-----~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~--~~~~~~vQefI~~g~DiRv~VVG--- 226 (344)
T 2p0a_A 163 ------PM-----VTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAM--AKTYATTEAFIDSKYDIRIQKIG--- 226 (344)
T ss_dssp ------TC-----CCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHH--HTCCEEEEECCCEEEEEEEEEET---
T ss_pred ------hh-----hhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhc--cCCeEEEEeccCCCccEEEEEEC---
Confidence 11 123678999999999999999999999987655543221 24568899999877999999994
Q ss_pred CCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 002207 312 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 391 (953)
Q Consensus 312 g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf 391 (953)
+. +++. +.... .+ +|+.+.. + ....+..++++ ++++|.++.+++|--+++.||+
T Consensus 227 -g~--vva~----~R~~~--------~g---~wrtN~~--~--~~~e~~~l~~e----~~~la~~Aa~a~gGldi~GVDl 280 (344)
T 2p0a_A 227 -SN--YKAY----MRTSI--------SG---NWKANTG--S--AMLEQVAMTER----YRLWVDSCSEMFGGLDICAVKA 280 (344)
T ss_dssp -TE--EEEE----EEEES--------SS---CSSTTSS--S--EEEEEECCCHH----HHHHHHHHTTGGGCCSEEEEEE
T ss_pred -CE--EEEE----EEecC--------CC---CCeecCC--c--eEEEeeCCCHH----HHHHHHHHHHHhCCCCEEEEEE
Confidence 32 2221 11110 11 2344432 2 22223346665 4789999999995457999997
Q ss_pred eecCCCCccccccccccCcccCCcEEEEeecC--CCCCCC
Q 002207 392 WFLPSSTHVFSSSETKYGSTEWGTILFTDINL--ISGMEQ 429 (953)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~--~PG~t~ 429 (953)
+. +++|.+||+|||. +|++..
T Consensus 281 l~-----------------~~~G~~~VlEVN~~~~P~~~~ 303 (344)
T 2p0a_A 281 VH-----------------SKDGRDYIIEVMDSSMPLIGE 303 (344)
T ss_dssp EE-----------------ETTSCEEEEEEECTTCCCCGG
T ss_pred EE-----------------cCCCCEEEEEEcCCCCCcccc
Confidence 64 5788899999999 999864
No 128
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.62 E-value=5.7e-16 Score=165.07 Aligned_cols=187 Identities=13% Similarity=-0.040 Sum_probs=123.3
Q ss_pred HhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCC-----CCceeEEE-eCCHHHHH
Q 002207 202 QAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA-----GSSIGVTV-AYGVIDSL 275 (953)
Q Consensus 202 i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~-----gsS~GV~~-v~~~~el~ 275 (953)
..+||+.+|++|+++|||+|++..+.+.+. +..+.+ .++||+||||..+ |+|.||.+ +++.+|+.
T Consensus 18 ~~l~k~~~k~ll~~~GIp~p~~~~~~~~~e----a~~~a~-----~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 18 TAMVEYEAKQVLKAYGLPVPEEKLAKTLDE----ALEYAK-----EIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp CEECHHHHHHHHHTTTCCCCCCEEESSHHH----HHHHHH-----HHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCCHHHHHHHHHHcCcCCCCeEEeCCHHH----HHHHHH-----HhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 468999999999999999999998876432 222222 2678999999999 88999999 79999987
Q ss_pred HHHHHhHhcC-------CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCc
Q 002207 276 KKAKGIILEG-------IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY 348 (953)
Q Consensus 276 ~~a~~~~~~~-------~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky 348 (953)
+.+.+++... ..+.+|||+||+|++|++++++++.. ..++++ + +. .. ++++. +
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~---~g~v~~------~-~~-------Gg--~~iE~-~ 148 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQ---FGHAIM------F-GL-------GG--IFVEI-L 148 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETT---TEEEEE------E-EE-------CS--TTHHH-H
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCC---CCcEEE------E-ec-------CC--ceeee-e
Confidence 7766654321 13689999999966999999997531 112221 1 10 11 11221 2
Q ss_pred cCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCC
Q 002207 349 LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 425 (953)
Q Consensus 349 ~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~P 425 (953)
.+ .+....| ++++..+++.+.+.++++++||+|++++|+-.+.+--..+ ..+..+.+++++++||||+.
T Consensus 149 -~d-~~~~~~P--l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l----~~~~~~~~~~~~~lEINPl~ 217 (238)
T 1wr2_A 149 -KD-VTFRLVP--ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKV----SKLVDDLKDYIKEMDLNPVF 217 (238)
T ss_dssp -CC-CEEEESS--CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHH----HHHHHHTTTTEEEEEEEEEE
T ss_pred -cc-eeeecCC--CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH----HHHHHcCCCCeEEEeccCeE
Confidence 12 1334444 9999999999999999999999999999841000000000 00001223349999999864
No 129
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.6e-14 Score=160.28 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=142.6
Q ss_pred CCcEEEEecCCCC-CC---ccHHHHHHHHcCCCEeCCChHHHHHhcCh----HHHHHHHHHHHHCCC---CccCeEEEeC
Q 002207 634 NQATVFIAVHGGI-GE---DGTLQSLLEAEGVPYTGPGVMASKTCMDK----VATSLALNHLADLGV---LTINKDVRRK 702 (953)
Q Consensus 634 ~~dvvf~~~hG~~-GE---dg~iq~llE~~gIPy~G~~~~as~l~~DK----~~tk~~~~~l~~~GI---ptp~~~~v~~ 702 (953)
.+|+||+-.+... .+ ...+-..||.+|+|.+ +++.+...|.|| ..+.++ |+++|+ |.++......
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~---l~~~gi~~~P~~~~t~~~~ 160 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKI---FHSLGPEKFPLVEQTFFPN 160 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHH---HHHHCTTTSCBCCCEEESS
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHH---HHHCCCCCCCCCCEEecCc
Confidence 4799999887632 11 1345567899999987 567899999999 445554 788888 8555544422
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
.. + +.+.+ +||+||||..+..+.||.++++.++++.+.+++... ..
T Consensus 161 ~~-------~----~~~~~-g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~----------------------~~ 206 (344)
T 2p0a_A 161 HK-------P----MVTAP-HFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA----------------------KT 206 (344)
T ss_dssp ST-------T----CCCCS-SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH----------------------TC
T ss_pred hh-------h----hhhcc-CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc----------------------CC
Confidence 11 1 13356 699999999999999999999999998654443321 35
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
.+++||||+.. +++.|.|+|+. +...++...+++| .... +. ....
T Consensus 207 ~~~vQefI~~g------------------------~DiRv~VVGg~-----vva~~R~~~~g~w---rtN~--~~-~~~e 251 (344)
T 2p0a_A 207 YATTEAFIDSK------------------------YDIRIQKIGSN-----YKAYMRTSISGNW---KANT--GS-AMLE 251 (344)
T ss_dssp CEEEEECCCEE------------------------EEEEEEEETTE-----EEEEEEEESSSCS---STTS--SS-EEEE
T ss_pred eEEEEeccCCC------------------------ccEEEEEECCE-----EEEEEEecCCCCC---eecC--Cc-eEEE
Confidence 68899999843 59999999875 2223333323333 2333 22 2222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC--CCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT--VPGMTP 920 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt--~PGlt~ 920 (953)
+.+ +++ +.+++|.++.+++|.-+++.||++.+. +|.+||+|||. +|++..
T Consensus 252 ~~~---l~~----e~~~la~~Aa~a~gGldi~GVDll~~~-~G~~~VlEVN~~~~P~~~~ 303 (344)
T 2p0a_A 252 QVA---MTE----RYRLWVDSCSEMFGGLDICAVKAVHSK-DGRDYIIEVMDSSMPLIGE 303 (344)
T ss_dssp EEC---CCH----HHHHHHHHHTTGGGCCSEEEEEEEEET-TSCEEEEEEECTTCCCCGG
T ss_pred eeC---CCH----HHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCEEEEEEcCCCCCcccc
Confidence 222 233 468899999999954569999988874 68899999999 999864
No 130
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.60 E-value=3.5e-14 Score=160.19 Aligned_cols=207 Identities=17% Similarity=0.185 Sum_probs=142.8
Q ss_pred CCcEEEEecCCCCC-C---ccHHHHHHHHcCCCEeCCChHHHHHhcChH----HHHHHHHHHHHCCC---CccCeEEEeC
Q 002207 634 NQATVFIAVHGGIG-E---DGTLQSLLEAEGVPYTGPGVMASKTCMDKV----ATSLALNHLADLGV---LTINKDVRRK 702 (953)
Q Consensus 634 ~~dvvf~~~hG~~G-E---dg~iq~llE~~gIPy~G~~~~as~l~~DK~----~tk~~~~~l~~~GI---ptp~~~~v~~ 702 (953)
.+|+||+-.+.... + ...+-..||.+|+|.+ +++.+...|.||. .+-++ |+++|+ |.++......
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~l---l~~~gi~~iP~t~~t~~~~ 255 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRL---HKKLGTEEFPLIDQTFYPN 255 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHH---HHHHCTTTSCBCCCEEESS
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHH---HHhCCCCCCCCCceEecCc
Confidence 47999998876542 2 2345567899999987 5678999999993 34444 788888 8555444422
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCC
Q 002207 703 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 782 (953)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~ 782 (953)
.. + +.+.+ +||+||||..+..+.||.++++.++++.+.+++... ..
T Consensus 256 ~~-------~----~i~~~-g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~----------------------~~ 301 (422)
T 1pk8_A 256 HK-------E----MLSST-TYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT----------------------KT 301 (422)
T ss_dssp GG-------G----CCCCS-SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH----------------------TS
T ss_pred hh-------h----hhhcc-CCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc----------------------Cc
Confidence 11 1 12456 699999999999999999999999988654433221 35
Q ss_pred eEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecCCccccccccccCCCceeEc
Q 002207 783 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 862 (953)
Q Consensus 783 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~ 862 (953)
.+++||||+.. +++.|.|+|++ +...++....++| ..... +.....+
T Consensus 302 ~~~vQEfI~~g------------------------~DIRv~VVGg~-----vva~~Rr~~~g~W---rtNvg-~g~~e~i 348 (422)
T 1pk8_A 302 YATAEPFIDAK------------------------YDVRVQKIGQN-----YKAYMRTSVSGNW---KTNTG-SAMLEQI 348 (422)
T ss_dssp CEEEEECCCEE------------------------EEEEEEEETTE-----EEEEEEEESSSCS---STTSS-CEEEEEE
T ss_pred eEEEEeecCCC------------------------ceEEEEEECCE-----EEEEEEEcCCCCc---eeccC-ceeeeee
Confidence 68899999843 59999999875 2223333223433 33332 2111223
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCC--CCCCCCC
Q 002207 863 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT--VPGMTPS 921 (953)
Q Consensus 863 P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt--~PGlt~~ 921 (953)
+ +++ +.+++|.++.++++.-+++.||++.+. +|.+||+|||. +|++...
T Consensus 349 ~-----lt~----e~~elA~kAaka~gGldiaGVDlL~s~-dG~~~VlEVN~s~~P~~~g~ 399 (422)
T 1pk8_A 349 A-----MSD----RYKLWVDTCSEIFGGLDICAVEALHGK-DGRDHIIEVVGSSMPLIGDH 399 (422)
T ss_dssp C-----CCH----HHHHHHHHHTTGGGCCSEEEEEEEEET-TSCEEEEEEECTTCCCCTTC
T ss_pred C-----CCH----HHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCEEEEEECCCCCCCccch
Confidence 3 233 578899999999944469999988874 68899999999 9999654
No 131
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.58 E-value=4.8e-15 Score=163.86 Aligned_cols=210 Identities=13% Similarity=-0.002 Sum_probs=128.4
Q ss_pred HHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCC
Q 002207 656 LEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 735 (953)
Q Consensus 656 lE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gs 735 (953)
||.+|+|..++ ..+...++||...+++ |+++|||||+++. ..+ + ++ +||+||||.++++
T Consensus 79 le~~~~p~~p~-~~~l~~~~dr~~~~~~---l~~~Gip~P~~~~--~ee---------~-----~i-~~PviVKp~~g~g 137 (320)
T 2pbz_A 79 IEKAKARFFGN-RRFLKWETTFELQDKA---LEGAGIPRVEVVE--PED---------A-----KP-DELYFVRIEGPRG 137 (320)
T ss_dssp HHTCCSCCBSC-SSGGGGGSCHHHHHHH---HHHHTCCBCCBCC--SCC---------C-----CS-SCCEEEECC----
T ss_pred HHHcCCCcCCC-HHHHHHHHhHHHHHHH---HHHCCcCCCCeeC--HhH---------c-----Cc-CCcEEEEECCCCC
Confidence 57899997655 5678899999999987 9999999999872 211 1 36 6999999999999
Q ss_pred CcceEEeCCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCC
Q 002207 736 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 815 (953)
Q Consensus 736 S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~ 815 (953)
|+|++++++ +|+.. +++.+ ...+||||||+|.
T Consensus 138 gkG~~~v~~-eel~~---~~~~~----------------------~~~~IiEEfI~g~---------------------- 169 (320)
T 2pbz_A 138 GSGHFIVEG-SELEE---RLSTL----------------------EEPYRVERFIPGV---------------------- 169 (320)
T ss_dssp --------C-EECSC---CCC--------------------------CCEEEECCCSC----------------------
T ss_pred CCCEEEECh-HHHHH---HHHhc----------------------CCCEEEEeeeceE----------------------
Confidence 999999999 99863 11110 1468999999997
Q ss_pred ceeEEEEEEEcC--CCCceeeCceEEEecCCccccccccccCCCceeEc---CCCCCCCCHHHHHHHHHHHHHHHHHc--
Q 002207 816 RWVEITVGVIGK--CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT---PPPASIMSTEALDKCKQRIELIANAL-- 888 (953)
Q Consensus 816 ~~~Eitv~vl~~--~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~---P~~~~~l~~~~~~~i~~~a~~~~~aL-- 888 (953)
+++..++.. .+....+....++...++.++....+ .+..+. |+. +++++.+++++++++++++|
T Consensus 170 ---~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~~~~p~~~---~~~~~~G~~P~~---~~~~~~~~a~~~a~~i~~~L~~ 240 (320)
T 2pbz_A 170 ---YLYVHFFYSPILERLELLGVDERVLIADGNARWPVKP---LPYTIVGNRAIA---LRESLLPQLYDYGLAFVRTMRE 240 (320)
T ss_dssp ---EEEEEEEEETTTTEEEEEEEEEEEETTCSSSSSCCSC---CCCCEEEEEECE---ECGGGHHHHHHHHHHHHHHHHH
T ss_pred ---ecceeEEeccccCceeEEEecceEEEECCeeecccCC---CceeeecCCCCc---cCHHHHHHHHHHHHHHHHHHHh
Confidence 444333221 12222222222332223333221000 011122 655 57788899999999999999
Q ss_pred ----CCcceEEEEEEEEcCCCcEEEEeeCCCCCC-----CCCchHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 002207 889 ----QLEGFSRIDAFVNVDNGEVLIIEVNTVPGM-----TPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 951 (953)
Q Consensus 889 ----g~~G~ariDf~v~~~~g~~~viEINt~PGl-----t~~S~l~~~a~~~~~~~yp~~l~~~li~~a~~r 951 (953)
|+.|...|| ++. +|++||+|||++||= +|.|. +.-+-+|.+-.-+.+=|++|+++
T Consensus 241 l~~~g~~G~~~vE--~~~-dg~~~v~EIapR~~GGt~~~~~y~~-----~~~~~~~~~g~r~~~e~~~~~~~ 304 (320)
T 2pbz_A 241 LEPPGVIGPFALH--FAY-DGSFKAIGIASRIDGGSNADHWYSE-----LYWGERLSMGRRIARELRLAEEE 304 (320)
T ss_dssp HSTTCCCSEEEEE--EEC-SSSCEEEEEESSBCSGGGSCCCCHH-----HHSSSCCCHHHHHHHHHHHHHTT
T ss_pred hccCCceeeEEEE--EcC-CCcEEEEEecCCCCCCCCccCCcee-----eeecCCCCHHHHHHHHHHHHHHc
Confidence 999999999 453 689999999998544 45442 22233466666677777888753
No 132
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.58 E-value=1.2e-15 Score=162.68 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=124.2
Q ss_pred HHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC-----CCCcceEE-eCCc
Q 002207 672 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD-----GCSTGVAR-LCCA 745 (953)
Q Consensus 672 ~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~-----gsS~GV~~-v~~~ 745 (953)
+..|||+.+|++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||..+ ++|.||.+ +++.
T Consensus 17 ~~~l~k~~~k~l---l~~~GIp~p~~~~~~~~~--------ea~~~a~~l-g~PvvvKp~~~~~~~r~~~gGv~~~v~~~ 84 (238)
T 1wr2_A 17 RTAMVEYEAKQV---LKAYGLPVPEEKLAKTLD--------EALEYAKEI-GYPVVLKLMSPQILHKSDAKVVMLNIKNE 84 (238)
T ss_dssp CCEECHHHHHHH---HHTTTCCCCCCEEESSHH--------HHHHHHHHH-CSSEEEEEECTTCCCHHHHTCEEEEECSH
T ss_pred cCCCCHHHHHHH---HHHcCcCCCCeEEeCCHH--------HHHHHHHHh-CCCEEEEEccCCCCcCCccCCEEEeCCCH
Confidence 347899999999 999999999999886532 233455678 69999999999 88999999 7999
Q ss_pred ccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEE
Q 002207 746 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI 825 (953)
Q Consensus 746 ~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl 825 (953)
+++..+ ++.++.+. . ...+......+|||+||++. +|++|+++
T Consensus 85 ~el~~a---~~~~~~~~------~----~~~~~~~~~~vlVEe~i~~g------------------------~E~~v~v~ 127 (238)
T 1wr2_A 85 EELKKK---WEEIHENA------K----KYRPDAEILGVLVAPMLKPG------------------------REVIIGVT 127 (238)
T ss_dssp HHHHHH---HHHHHHHH------H----HHCTTCCCCEEEEEECCCCC------------------------EEEEEEEE
T ss_pred HHHHHH---HHHHHHhh------h----hhCCCCccceEEEEECCCCC------------------------eEEEEEEE
Confidence 988864 44443320 0 00111124789999999943 49999999
Q ss_pred cCCCCceeeCceEEEecCCccccccccccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE-------
Q 002207 826 GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA------- 898 (953)
Q Consensus 826 ~~~~~~~~~~p~~~i~~~~~~~d~~~Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf------- 898 (953)
++.. ..|.+.+. .+++ +++. + ...+..+.| ++++..+++.+.+++++.++|++|++|+|+
T Consensus 128 ~d~~----~g~v~~~~-~Gg~-~iE~-~-~d~~~~~~P-----l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l 194 (238)
T 1wr2_A 128 EDPQ----FGHAIMFG-LGGI-FVEI-L-KDVTFRLVP-----ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDML 194 (238)
T ss_dssp EETT----TEEEEEEE-ECST-THHH-H-CCCEEEESS-----CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHH
T ss_pred eCCC----CCcEEEEe-cCCc-eeee-e-cceeeecCC-----CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 8752 11222222 2332 2442 2 223333333 578999999999999999999999999984
Q ss_pred ------EEEcCCCc-EEEEeeCCCC
Q 002207 899 ------FVNVDNGE-VLIIEVNTVP 916 (953)
Q Consensus 899 ------~v~~~~g~-~~viEINt~P 916 (953)
+.+ .++ ++++||||+.
T Consensus 195 ~~l~~~~~~--~~~~~~~lEINPl~ 217 (238)
T 1wr2_A 195 LKVSKLVDD--LKDYIKEMDLNPVF 217 (238)
T ss_dssp HHHHHHHHH--TTTTEEEEEEEEEE
T ss_pred HHHHHHHHc--CCCCeEEEeccCeE
Confidence 232 345 9999999854
No 133
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.40 E-value=6.4e-12 Score=134.44 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=141.6
Q ss_pred CcEEEEecCCC-CCCccHHHHHHHHcCCCEeCCChHHHHHhcChHHHHHHHHHHHHCCCCccCeEEEeCccccC--Cch-
Q 002207 635 QATVFIAVHGG-IGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLK--TPI- 710 (953)
Q Consensus 635 ~dvvf~~~hG~-~GEdg~iq~llE~~gIPy~G~~~~as~l~~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~--~~~- 710 (953)
+|+ ++.+|+. +--| .+...+++.+. |+=++..+..++.||..+.++ |+++|||||++.+++...... ...
T Consensus 58 ~d~-lisf~s~gfpl~-kai~y~~lr~p-~~INd~~~q~~~~DK~~~~~i---L~~~gIPtP~t~~~~rd~~~~~~~~~~ 131 (330)
T 3t7a_A 58 CDC-LISFHSKGFPLD-KAVAYAKLRNP-FVINDLNMQYLIQDRREVYSI---LQAEGILLPRYAILNRDPNNPKECNLI 131 (330)
T ss_dssp CSE-EEECCCTTCCHH-HHHHHHHHHCC-EESBCSTHHHHHTBHHHHHHH---HHHTTCCCCCEEEECCBTTBGGGSSEE
T ss_pred CCE-EEEeccCCCcHH-HHHHHHHHhCC-ceeCCHHHHHHHHHHHHHHHH---HHHcCCCCCCEEEEeCCCCCcccccee
Confidence 454 4445553 3223 66788898885 566778889999999999998 999999999999987632100 000
Q ss_pred --hhHHHHHHhhcCCCcEEEecCCCC-----------CCcc----eEEeCCcccHHHHHHHHHHHHhhCCCCCccccccc
Q 002207 711 --VDIWHELTSKLQCKTLCVKPARDG-----------CSTG----VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM 773 (953)
Q Consensus 711 --~~~~~~~~~~lg~~PlvVKP~~~g-----------sS~G----V~~v~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~ 773 (953)
.+.++.....+ ++|+|+||..+. .+.| +.++.+.++... |. ..
T Consensus 132 e~~d~i~~~g~~l-~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~------------~~-~~------ 191 (330)
T 3t7a_A 132 EGEDHVEVNGEVF-QKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYS------------PE-SN------ 191 (330)
T ss_dssp ECSSEEEETTEEE-ESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEE------------SC-CS------
T ss_pred ccchhhhhccccc-cCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccC------------hh-hh------
Confidence 00011012356 599999999874 2223 345666655321 00 00
Q ss_pred ccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCCCCceeeCceEEEecC--Cccccccc
Q 002207 774 IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES--GDILSLEE 851 (953)
Q Consensus 774 ~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~~~~~~~~p~~~i~~~--~~~~d~~~ 851 (953)
...+..+|+||||+.. | +++.|-|+|+. +...++-+.. .+ +|..
T Consensus 192 ----vr~~~~~i~QEFI~~~-------------------G----~DIRv~vVG~~-----vv~Am~R~sp~~~G--~~r~ 237 (330)
T 3t7a_A 192 ----VRKTGSYIYEEFMPTD-------------------G----TDVKVYTVGPD-----YAHAEARKSPALDG--KVER 237 (330)
T ss_dssp ----CCSSSCEEEEECCCCS-------------------S----EEEEEEEESTT-----CEEEEEEECTTSSC--BCCB
T ss_pred ----hccCCcEEEEeccCCC-------------------C----ceEEEEEECCE-----EEEEEEEeCCCCCC--cEEE
Confidence 0126789999999732 1 49999999876 3333333321 12 3455
Q ss_pred cccCCCceeEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHH
Q 002207 852 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 926 (953)
Q Consensus 852 Ky~~g~~~~~~P~~~~~l~~~~~~~i~~~a~~~~~aLg~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~ 926 (953)
..++|.....+ . +++ +.+++|.++++++|+. ++.||++.+ ++..||+|||..|-.....-++.
T Consensus 238 N~~gG~~~~~v--~---Lt~----eek~iA~kaa~a~G~~-v~GVDlLrs--~~~~~V~EVNg~~fvk~~~~yyd 300 (330)
T 3t7a_A 238 DSEGKEVRYPV--I---LNA----REKLIAWKVCLAFKQT-VCGFDLLRA--NGQSYVCDVNGFSFVKNSMKYYD 300 (330)
T ss_dssp CTTSCBCCEEC--C---CCH----HHHHHHHHHHHHTTBS-EEEEEEEEE--TTEEEEEEEEESCCCSSCHHHHH
T ss_pred cCCCCceeeee--c---CCH----HHHHHHHHHHHHhCCc-eEEEEEEEE--CCccEEEEeCCCccccCchhHHH
Confidence 55555543333 2 344 5588999999999986 899999887 46799999999998887653333
No 134
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-14 Score=134.72 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=77.4
Q ss_pred HHHHhccHHHHHHHHHHCCCCCCCeE--EecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCCCCceeEEEeCCHHHHHH
Q 002207 199 ACRQAFDKYDASLEMSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLK 276 (953)
Q Consensus 199 a~~i~~DK~~~k~~l~~~Giptp~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~gsS~GV~~v~~~~el~~ 276 (953)
++.+++||..++++|+++|||+|+++ .+.+.+ ++..+.+ .++||+||||..+++|.||.++++.+|+.+
T Consensus 2 a~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~----~~~~~~~-----~~~~P~vvKp~~~~~~~gv~~v~~~~el~~ 72 (108)
T 2cqy_A 2 SSGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAE----EAVRIAR-----EIGYPVMIKASAGGGGKGMRIAWDDEETRD 72 (108)
T ss_dssp CCCCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHH----HHHHHHH-----HHCSSEEEEETTSCCTTTCEEESSHHHHHH
T ss_pred chhhhcCHHHHHHHHHHcCCCCCCCcccccCCHH----HHHHHHH-----hcCCCEEEEECCCCCCccEEEeCCHHHHHH
Confidence 35679999999999999999999987 554432 2223322 257899999999999999999999999876
Q ss_pred HHHHhHh---cCC-CCcEEEeccCCCCeEEEEEEE
Q 002207 277 KAKGIIL---EGI-DDRVVVELFLEGGSEFTAIVL 307 (953)
Q Consensus 277 ~a~~~~~---~~~-~~~vlVEefI~Gg~E~tv~Vl 307 (953)
...+++. ..+ +..+|||+||+|.+|++|.|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 73 GFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp HHHHHHHHHHHHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred HHHHHHHHHHhhcCCCcEEEeeccCCCcEEEEEec
Confidence 6655432 112 468999999998559998876
No 135
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.35 E-value=6.7e-12 Score=134.26 Aligned_cols=238 Identities=13% Similarity=0.026 Sum_probs=151.3
Q ss_pred CcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchh-----hhh
Q 002207 163 NVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNES-----ELS 237 (953)
Q Consensus 163 ~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~-----~~~ 237 (953)
-+|+.+.-..-+|..| .+...+++.+. |+-++..+..++.||..+.++|+++|||||++..+........ +..
T Consensus 57 ~~d~lisf~s~gfpl~-kai~y~~lr~p-~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~ 134 (330)
T 3t7a_A 57 LCDCLISFHSKGFPLD-KAVAYAKLRNP-FVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGE 134 (330)
T ss_dssp CCSEEEECCCTTCCHH-HHHHHHHHHCC-EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECS
T ss_pred cCCEEEEeccCCCcHH-HHHHHHHHhCC-ceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccc
Confidence 5888888876667655 45578888775 6678899999999999999999999999999999876431000 000
Q ss_pred hhhhhcCCCCCCCcEEEeeCCCC-----------CceeE----EEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC-CCeE
Q 002207 238 NWFVTNKLDPNSGKVVVKPTRAG-----------SSIGV----TVAYGVIDSLKKAKGIILEGIDDRVVVELFLE-GGSE 301 (953)
Q Consensus 238 ~~~~~~~l~~~~~PvvVKP~~~g-----------sS~GV----~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~-Gg~E 301 (953)
..++ ..-..+++|+|+||..|. .+.|. .++.|.+..... .... +.+..+|+||||+ +|++
T Consensus 135 d~i~-~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~-~~~v--r~~~~~i~QEFI~~~G~D 210 (330)
T 3t7a_A 135 DHVE-VNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSP-ESNV--RKTGSYIYEEFMPTDGTD 210 (330)
T ss_dssp SEEE-ETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEES-CCSC--CSSSCEEEEECCCCSSEE
T ss_pred hhhh-hccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccCh-hhhh--ccCCcEEEEeccCCCCce
Confidence 0010 001235689999999985 23333 455554321100 0011 2467899999995 3499
Q ss_pred EEEEEEEeCCCCccccEEecceEEEEeccCccccccCCcccccccCccCCCceEEEcCCCCCHHHHHHHHHHHHHHHHHh
Q 002207 302 FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRL 381 (953)
Q Consensus 302 ~tv~Vl~~~~g~~~~~v~l~~~ei~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aL 381 (953)
+.|-|+| . ..+. . +..... . .++ +|++....++ .. .|..+++++ +++|.++++++
T Consensus 211 IRv~vVG----~--~vv~---A-m~R~sp----~--~~G--~~r~N~~gG~-~~--~~v~Lt~ee----k~iA~kaa~a~ 265 (330)
T 3t7a_A 211 VKVYTVG----P--DYAH---A-EARKSP----A--LDG--KVERDSEGKE-VR--YPVILNARE----KLIAWKVCLAF 265 (330)
T ss_dssp EEEEEES----T--TCEE---E-EEEECT----T--SSC--BCCBCTTSCB-CC--EECCCCHHH----HHHHHHHHHHT
T ss_pred EEEEEEC----C--EEEE---E-EEEeCC----C--CCC--cEEEcCCCCc-ee--eeecCCHHH----HHHHHHHHHHh
Confidence 9999995 2 1221 1 111110 0 011 3566665333 32 345688776 89999999999
Q ss_pred CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcch-HHHHHHHhCCCHHHHHHHHHHHHhhh
Q 002207 382 GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF-LFQQASKVGFSHSNILRTIIGHACSR 458 (953)
Q Consensus 382 g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~-~p~~a~~~G~s~~~ll~~li~~a~~r 458 (953)
|+. ++.||++. + ++.+||+|||..|-.....- |=.+ ..+|+.++-.++..
T Consensus 266 G~~-v~GVDlLr-----------------s-~~~~~V~EVNg~~fvk~~~~yyd~~--------a~il~~~~~~~~~~ 316 (330)
T 3t7a_A 266 KQT-VCGFDLLR-----------------A-NGQSYVCDVNGFSFVKNSMKYYDDC--------AKILGNIVMRELAP 316 (330)
T ss_dssp TBS-EEEEEEEE-----------------E-TTEEEEEEEEESCCCSSCHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred CCc-eEEEEEEE-----------------E-CCccEEEEeCCCccccCchhHHHHH--------HHHHHHHHHHHhCc
Confidence 986 99999863 3 45689999999888776432 3222 24566666555543
No 136
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=7e-14 Score=129.39 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=71.1
Q ss_pred HHHHhcChHHHHHHHHHHHHCCCCccCeE--EEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccc
Q 002207 670 ASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 747 (953)
Q Consensus 670 as~l~~DK~~tk~~~~~l~~~GIptp~~~--~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~gsS~GV~~v~~~~e 747 (953)
++++|+||..++++ |+++|||+|+++ .+.+.+ .+.++.+.+ +||+||||..+++|.||.++++.++
T Consensus 2 a~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~~~--------~~~~~~~~~-~~P~vvKp~~~~~~~gv~~v~~~~e 69 (108)
T 2cqy_A 2 SSGSSGDKIESKLL---AKKAEVNTIPGFDGVVKDAE--------EAVRIAREI-GYPVMIKASAGGGGKGMRIAWDDEE 69 (108)
T ss_dssp CCCCCCCCCCSTTC---CCSSCCCCCSCCCSCBSSHH--------HHHHHHHHH-CSSEEEEETTSCCTTTCEEESSHHH
T ss_pred chhhhcCHHHHHHH---HHHcCCCCCCCcccccCCHH--------HHHHHHHhc-CCCEEEEECCCCCCccEEEeCCHHH
Confidence 45789999999999 999999999986 554321 233445678 6999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hhCCCCCcccccccccCCCCCCCeEEEeccccCc
Q 002207 748 LTVYVKALEECL-LRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 793 (953)
Q Consensus 748 L~~~~~al~~a~-~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~ 793 (953)
+..+.+.+.... ... ....+|||+||+|.
T Consensus 70 l~~~~~~~~~~~~~~~-----------------~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 70 TRDGFRLSSQEAASSF-----------------GDDRLLIEKFIDNP 99 (108)
T ss_dssp HHHHHHHHHHHHHHHT-----------------SSCCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHhhc-----------------CCCcEEEeeccCCC
Confidence 886433322110 110 03679999999996
No 137
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=98.91 E-value=2.1e-09 Score=121.94 Aligned_cols=98 Identities=15% Similarity=0.054 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCc-EEEeeCCC----CCceeEEEeCCHHHHHHHH
Q 002207 204 FDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPTRA----GSSIGVTVAYGVIDSLKKA 278 (953)
Q Consensus 204 ~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P-vvVKP~~~----gsS~GV~~v~~~~el~~~a 278 (953)
.+++.+|++|+++|||+|++..+.+.+. +.++.+ .++|| +||||... |.+.||.++++.+|+.+.+
T Consensus 3 l~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~aa~-----~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~ 73 (388)
T 2nu8_B 3 LHEYQAKQLFARYGLPAPVGYACTTPRE----AEEAAS-----KIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFA 73 (388)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHH----HHHHHH-----HHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcCCCCeeEECCHHH----HHHHHH-----HhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHH
Confidence 4789999999999999999998876543 223332 25789 99999986 4456999999999988877
Q ss_pred HHhHhcC-----------CCCcEEEeccCCCCeEEEEEEEEeC
Q 002207 279 KGIILEG-----------IDDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 279 ~~~~~~~-----------~~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
.+++... ..+.+|||+|+++++|++++++.+.
T Consensus 74 ~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~ 116 (388)
T 2nu8_B 74 ENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDR 116 (388)
T ss_dssp HHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEET
T ss_pred HHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEec
Confidence 7765310 1357999999995599999999864
No 138
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=98.87 E-value=4e-09 Score=119.70 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCC-cEEEeeC--CCCCcee---------EEEeCCH
Q 002207 204 FDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPT--RAGSSIG---------VTVAYGV 271 (953)
Q Consensus 204 ~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-PvvVKP~--~~gsS~G---------V~~v~~~ 271 (953)
.+++.+|++|+++|||+|++..+.+.++ +.++.++ ++| |+||||. .||.++| |.++++.
T Consensus 3 l~E~~aK~lL~~~GIpvp~~~~~~s~~e----a~~~a~~-----lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~ 73 (395)
T 2fp4_B 3 LQEYQSKKLMSDNGVKVQRFFVADTANE----ALEAAKR-----LNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 73 (395)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHH----HHHHHHH-----HTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCH
T ss_pred CCHHHHHHHHHHCCcCCCCeEEECCHHH----HHHHHHH-----cCCCcEEEEEeeccCCCccCccccCCcCCEEEECCH
Confidence 4688999999999999999998876543 2233322 578 8999994 6665654 9999999
Q ss_pred HHHHHHHHHhHhcC--------C---CCcEEEeccCCCCeEEEEEEEEeC
Q 002207 272 IDSLKKAKGIILEG--------I---DDRVVVELFLEGGSEFTAIVLDVG 310 (953)
Q Consensus 272 ~el~~~a~~~~~~~--------~---~~~vlVEefI~Gg~E~tv~Vl~~~ 310 (953)
+|+.+.+.+++... . .+.+|||+|++.++|+.++++.+.
T Consensus 74 ~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~ 123 (395)
T 2fp4_B 74 EVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 123 (395)
T ss_dssp HHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEET
T ss_pred HHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEcc
Confidence 99888877665321 0 246999999996699999999864
No 139
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=98.66 E-value=3.5e-08 Score=111.87 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=75.0
Q ss_pred cChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCc-EEEecCCC----CCCcceEEeCCcccHH
Q 002207 675 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-LCVKPARD----GCSTGVARLCCAEDLT 749 (953)
Q Consensus 675 ~DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~P-lvVKP~~~----gsS~GV~~v~~~~eL~ 749 (953)
.+++.+|++ |+++|||||++..+.+.+ .+.++.+++ +|| +||||... |.+.||.++++.+++.
T Consensus 3 l~E~~aK~l---L~~~GIpvp~~~~~~s~e--------ea~~aa~~l-G~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~ 70 (388)
T 2nu8_B 3 LHEYQAKQL---FARYGLPAPVGYACTTPR--------EAEEAASKI-GAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIR 70 (388)
T ss_dssp CCHHHHHHH---HHHTTCCCCCEEEESSHH--------HHHHHHHHH-CSSCEEEEECCSSSCTTTTTCEEEECSHHHHH
T ss_pred CCHHHHHHH---HHHCCcCCCCeeEECCHH--------HHHHHHHHh-CCCeEEEEEecCCCCCCccCCEEEECCHHHHH
Confidence 378999999 999999999999886533 233455678 699 99999986 4456999999888887
Q ss_pred HHHHHHHHHHhhCCCCCc-ccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 750 VYVKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 750 ~~~~al~~a~~~~~~~~~-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
+ +++..+... + ...++ .+....+.++||+|+++. +|+.++++.+.
T Consensus 71 ~---a~~~~~~~~----~~t~q~g---~~g~~~~~vlVEe~v~~~------------------------~E~~v~v~~D~ 116 (388)
T 2nu8_B 71 A---FAENWLGKR----LVTYQTD---ANGQPVNQILVEAATDIA------------------------KELYLGAVVDR 116 (388)
T ss_dssp H---HHHHHTTSE----ECCTTSC---TTCEECCCEEEEECCCEE------------------------EEEEEEEEEET
T ss_pred H---HHHHHhhhh----hhccccC---CCCcccceEEEEEccccC------------------------CcEEEEEEEec
Confidence 5 455443210 0 00000 000113579999999843 49999999875
No 140
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=98.59 E-value=5.9e-08 Score=110.12 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCC-cEEEecC--CCCCC---------cceEEeC
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK-TLCVKPA--RDGCS---------TGVARLC 743 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~-PlvVKP~--~~gsS---------~GV~~v~ 743 (953)
+++.+|++ |+++|||||++..+.+.+ .+.++.+++ +| |+||||. .+|.+ -||.+++
T Consensus 4 ~E~~aK~l---L~~~GIpvp~~~~~~s~~--------ea~~~a~~l-g~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~ 71 (395)
T 2fp4_B 4 QEYQSKKL---MSDNGVKVQRFFVADTAN--------EALEAAKRL-NAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTK 71 (395)
T ss_dssp CHHHHHHH---HHHTTCCCCCEEEESSHH--------HHHHHHHHH-TCSSEEEEECCSSSCGGGCEETTSCBCSEEEES
T ss_pred CHHHHHHH---HHHCCcCCCCeEEECCHH--------HHHHHHHHc-CCCcEEEEEeeccCCCccCccccCCcCCEEEEC
Confidence 67889998 999999999999886533 234455678 69 8999995 45544 3599998
Q ss_pred CcccHHHHHHHHHHHHhhCCCCCc-ccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEE
Q 002207 744 CAEDLTVYVKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITV 822 (953)
Q Consensus 744 ~~~eL~~~~~al~~a~~~~~~~~~-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv 822 (953)
+.+++.+ +++..+.. .+ .+..+ .+..+.+.++||+|++.. +|+.+
T Consensus 72 s~~e~~~---a~~~~l~~----~~~t~q~g---~~g~~~~~vlVEe~v~~~------------------------~E~~v 117 (395)
T 2fp4_B 72 DPEVVGQ---LAKQMIGY----NLATKQTP---KEGVKVNKVMVAEALDIS------------------------RETYL 117 (395)
T ss_dssp CHHHHHH---HHHTTTTS----EEECTTSC---TTCEECCCEEEEECCCCS------------------------EEEEE
T ss_pred CHHHHHH---HHHHHhhc----chhhhccC---CCCCccceEEEEEccCCc------------------------eeEEE
Confidence 8888775 44433221 00 00000 000113579999999843 49999
Q ss_pred EEEcCC
Q 002207 823 GVIGKC 828 (953)
Q Consensus 823 ~vl~~~ 828 (953)
+++.+.
T Consensus 118 ~i~~D~ 123 (395)
T 2fp4_B 118 AILMDR 123 (395)
T ss_dssp EEEEET
T ss_pred EEEEcc
Confidence 999876
No 141
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.46 E-value=3.6e-07 Score=103.83 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCCC----CCceeEEEeCCHHHHHHHHHH
Q 002207 205 DKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA----GSSIGVTVAYGVIDSLKKAKG 280 (953)
Q Consensus 205 DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~~----gsS~GV~~v~~~~el~~~a~~ 280 (953)
+-+.+|++|+++|||||++..+.+.++ +.+..++ ++||+||||... |.+.||.++++.+|+.+.+.+
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~aa~~-----lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~ 74 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPGKVAYTPEE----AKRIAEE-----FGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQA 74 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSHHH----HHHHHHH-----HTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCeEEECCHHH----HHHHHHH-----cCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHH
Confidence 567899999999999999999877543 2222222 568999999983 234599999999999888877
Q ss_pred hHhcC----CCCcEEEeccCCCCeEEEEEEEEeCC
Q 002207 281 IILEG----IDDRVVVELFLEGGSEFTAIVLDVGS 311 (953)
Q Consensus 281 ~~~~~----~~~~vlVEefI~Gg~E~tv~Vl~~~~ 311 (953)
++... ..+.++||+|+++++|++++++.+..
T Consensus 75 ~~~~~~~g~~~~~vlVEe~v~~g~El~vgv~~D~~ 109 (397)
T 3ufx_B 75 ILGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDRA 109 (397)
T ss_dssp HTTCEETTEECCCEEEEECCCEEEEEEEEEEEETT
T ss_pred hhhhhccCCccceEEEEEeecCCeeEEEEEEecCC
Confidence 65421 24689999999955999999998753
No 142
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.16 E-value=5.8e-06 Score=93.88 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHCCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC----CCCcceEEeCCcccHHHH
Q 002207 676 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD----GCSTGVARLCCAEDLTVY 751 (953)
Q Consensus 676 DK~~tk~~~~~l~~~GIptp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~----gsS~GV~~v~~~~eL~~~ 751 (953)
+-+.+|++ |+++|||||++..+.+.+ ...++.+++ +||+||||... |.+.||.++++.+++.+
T Consensus 4 ~E~~aK~l---L~~~GIpvp~~~~~~s~e--------ea~~aa~~l-G~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~- 70 (397)
T 3ufx_B 4 HEYQAKEI---LARYGVPVPPGKVAYTPE--------EAKRIAEEF-GKRVVIKAQVHVGGRGKAGGVKLADTPQEAYE- 70 (397)
T ss_dssp CHHHHHHH---HHHTTCCCCCEEEESSHH--------HHHHHHHHH-TSCEEEEECCSSSCTTTTTCEEEESSHHHHHH-
T ss_pred CHHHHHHH---HHHCCCCCCCeEEECCHH--------HHHHHHHHc-CCCEEEEEccccCCCCccceEEEeCCHHHHHH-
Confidence 45678888 999999999999887643 233456778 59999999873 23459999988888775
Q ss_pred HHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEeccccCcccccccccccccchhhhhcCCCceeEEEEEEEcCC
Q 002207 752 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 828 (953)
Q Consensus 752 ~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eitv~vl~~~ 828 (953)
++++.+... + +....+.++||+|+++. +|+.++++.+.
T Consensus 71 --a~~~~~~~~----~---------~g~~~~~vlVEe~v~~g------------------------~El~vgv~~D~ 108 (397)
T 3ufx_B 71 --KAQAILGMN----I---------KGLTVKKVLVAEAVDIA------------------------KEYYAGLILDR 108 (397)
T ss_dssp --HHHHHTTCE----E---------TTEECCCEEEEECCCEE------------------------EEEEEEEEEET
T ss_pred --HHHHhhhhh----c---------cCCccceEEEEEeecCC------------------------eeEEEEEEecC
Confidence 555544210 0 00114679999999842 49999999875
No 143
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=97.96 E-value=3.6e-05 Score=86.18 Aligned_cols=175 Identities=11% Similarity=0.116 Sum_probs=91.3
Q ss_pred CCCcEEEeeCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC-------CCe--EEEEEEEEeCCCCccccE
Q 002207 248 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE-------GGS--EFTAIVLDVGSGFDCHPV 318 (953)
Q Consensus 248 ~~~PvvVKP~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~-------Gg~--E~tv~Vl~~~~g~~~~~v 318 (953)
...++|+||..++.|.||.++++.+++.+.... ....++||+||+ +|+ ++++-|+-.+ .....
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~-----~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts---~l~vy 217 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDN-----QGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN---QYNIY 217 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHH-----HTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT---TCCEE
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhc-----cCCcEEEEecccCceeecCCCceeEEEEEEEEcC---CCEEE
Confidence 345899999999999999999999997755432 245789999995 445 5555555321 00111
Q ss_pred EecceEEEEeccCcc--cccc---CCcccccc----cCccC---CCceE------EE---cCCCCCHHHHHHHHHHHHHH
Q 002207 319 VLLPTEVELQFQGSV--DVRE---KDAIFNYR----RKYLP---TQQVA------YH---TPPRFPIVVINSIREGASLL 377 (953)
Q Consensus 319 ~l~~~ei~~~~~~~~--~~~~---~~~~~dy~----~Ky~~---~~~~~------~~---~Pa~l~~~~~~~i~~~a~~~ 377 (953)
+.--+-+.+....+. +..+ .-..+... ..|.. +.... +. ........+..+|+++...+
T Consensus 218 ~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~ 297 (380)
T 3tig_A 218 LYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVC 297 (380)
T ss_dssp ECSCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHH
T ss_pred EEcCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 111111111110000 0000 00000000 01110 00000 00 01111235566777777766
Q ss_pred HHH----h-------CCCCeeEeeeeecCCCCccccccccccCcccCCcEEEEeecCCCCCCCcchHHHHHHHhCCCHHH
Q 002207 378 FQR----L-------GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSN 446 (953)
Q Consensus 378 ~~a----L-------g~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~lEIN~~PG~t~~S~~p~~a~~~G~s~~~ 446 (953)
+.+ + +|-.+.++||++ |+++++|+||||+.|++.+. + .++
T Consensus 298 l~a~~~~i~~~~~~~~~FEl~G~D~li-----------------d~~l~~wllEVN~~P~~~q~-~-----------i~~ 348 (380)
T 3tig_A 298 LSCLEPAISTKYLPYHSFQLFGFDFMV-----------------DKNLKVWLIEVNGAPACAQK-L-----------YAE 348 (380)
T ss_dssp HHHHHHHHCCTTSSSEECEEEEEEEEE-----------------BTTCCEEEEEEESSCCCCTT-T-----------HHH
T ss_pred HHHHHHHhhhcccCCceEEEEeEEEEE-----------------cCCCcEEEEEEeCCCCccHH-h-----------HHH
Confidence 664 2 234688999886 67899999999999998753 2 346
Q ss_pred HHHHHHHHHhhhC
Q 002207 447 ILRTIIGHACSRF 459 (953)
Q Consensus 447 ll~~li~~a~~r~ 459 (953)
|++.+++.|+.-+
T Consensus 349 l~~~~~~iavdp~ 361 (380)
T 3tig_A 349 LCKGIVDLAISSV 361 (380)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHhcccc
Confidence 7778888877764
No 144
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=97.87 E-value=0.00013 Score=81.54 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHH----c-------CCcceEEEEEEEEcCCCcEEEEeeCCCCCCCCCchHHHHHHhcCCCCCHHH
Q 002207 871 TEALDKCKQRIELIANA----L-------QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQ 939 (953)
Q Consensus 871 ~~~~~~i~~~a~~~~~a----L-------g~~G~ariDf~v~~~~g~~~viEINt~PGlt~~S~l~~~a~~~~~~~yp~~ 939 (953)
..+..+|++++..++.+ + +|..+..+||++|. +.++++||||+.|++... .. .+
T Consensus 284 ~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~-~l~~wllEVN~~P~~~q~-------------~i-~~ 348 (380)
T 3tig_A 284 NSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDK-NLKVWLIEVNGAPACAQK-------------LY-AE 348 (380)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBT-TCCEEEEEEESSCCCCTT-------------TH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcC-CCcEEEEEEeCCCCccHH-------------hH-HH
Confidence 35666777776666644 2 24467899999995 799999999999999742 34 47
Q ss_pred HHHHHHHHHhhcc
Q 002207 940 FFRKVLDLGSERF 952 (953)
Q Consensus 940 l~~~li~~a~~r~ 952 (953)
|++.++++|+.-+
T Consensus 349 l~~~~~~iavdp~ 361 (380)
T 3tig_A 349 LCKGIVDLAISSV 361 (380)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHhcccc
Confidence 8888888887644
No 145
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=93.84 E-value=0.13 Score=58.59 Aligned_cols=100 Identities=13% Similarity=-0.045 Sum_probs=66.7
Q ss_pred HHHHHHHHHHCCC---C---CCCeEEecCCccchhhhhhhhhhcCCCCCC-CcEEEeeCC--CCC--ceeEEEeCCHHHH
Q 002207 206 KYDASLEMSKQGF---I---TVPSFLLQGSEVNESELSNWFVTNKLDPNS-GKVVVKPTR--AGS--SIGVTVAYGVIDS 274 (953)
Q Consensus 206 K~~~k~~l~~~Gi---p---tp~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~~--~gs--S~GV~~v~~~~el 274 (953)
-+..|.+|.++++ | .+++..+..... .+++.+..+ .++ ||+|||+.. ++- .=||.++.+.+|+
T Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~eA~~~a~-----~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev 81 (425)
T 3mwd_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTD-WARLLQDHP-----WLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGV 81 (425)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCC-HHHHHHHCG-----GGGTSCEEEEECSSCSCTTTTTCCEEEECHHHH
T ss_pred HHHHHHHHHHhccccCCccCCcceEEeCCCCC-HHHHHHHHH-----HhCCCCEEEEeccccCCCCcCCeEEEECCHHHH
Confidence 4678999999999 4 223666655432 223333322 245 799999965 222 2388888899998
Q ss_pred HHHHHHhHhcC--------CCCcEEEeccCCC--CeEEEEEEEEeCC
Q 002207 275 LKKAKGIILEG--------IDDRVVVELFLEG--GSEFTAIVLDVGS 311 (953)
Q Consensus 275 ~~~a~~~~~~~--------~~~~vlVEefI~G--g~E~tv~Vl~~~~ 311 (953)
.+++.+++... .-..++||+++.. ++|+-+++..|..
T Consensus 82 ~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~ 128 (425)
T 3mwd_A 82 KSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE 128 (425)
T ss_dssp HHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT
T ss_pred HHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCC
Confidence 88877765321 1246899999963 3899999998643
No 146
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=92.14 E-value=0.2 Score=61.42 Aligned_cols=100 Identities=13% Similarity=-0.061 Sum_probs=67.8
Q ss_pred HHHHHHHHHHCCCC------CCCeEEecCCccchhhhhhhhhhcCCCCCC-CcEEEeeCCCCC----ceeEEEeCCHHHH
Q 002207 206 KYDASLEMSKQGFI------TVPSFLLQGSEVNESELSNWFVTNKLDPNS-GKVVVKPTRAGS----SIGVTVAYGVIDS 274 (953)
Q Consensus 206 K~~~k~~l~~~Gip------tp~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~PvvVKP~~~gs----S~GV~~v~~~~el 274 (953)
-+..|.+|.++++| ++++..+...+.. +++.+..+ .++ +|+|||+...-+ .=||.++.+.+|+
T Consensus 8 Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~-~eA~~aa~-----~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa 81 (829)
T 3pff_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTDW-ARLLQDHP-----WLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGV 81 (829)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCH-HHHHHHCT-----HHHHSCEEEEECSSCSCTTTTTCCEEEECHHHH
T ss_pred HHHHHHHHHHhCccccccccCCceEEeCCCCCH-HHHHHHHH-----HhCCCCEEEEecccccCCCcCCeEEEECCHHHH
Confidence 47789999999998 5577777665332 22222221 133 799999965322 2378888899999
Q ss_pred HHHHHHhHhcCC--------CCcEEEeccCCC--CeEEEEEEEEeCC
Q 002207 275 LKKAKGIILEGI--------DDRVVVELFLEG--GSEFTAIVLDVGS 311 (953)
Q Consensus 275 ~~~a~~~~~~~~--------~~~vlVEefI~G--g~E~tv~Vl~~~~ 311 (953)
.+++.+++.... -..+|||+++.. ++|+-++++.|..
T Consensus 82 ~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~ 128 (829)
T 3pff_A 82 KSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE 128 (829)
T ss_dssp HHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCC
Confidence 888877653211 145899999953 3899999998643
No 147
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=85.62 E-value=1.8 Score=49.16 Aligned_cols=64 Identities=11% Similarity=-0.055 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCC---C---ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCC--CC--CCcceEEeCCccc
Q 002207 678 VATSLALNHLADLGV---L---TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR--DG--CSTGVARLCCAED 747 (953)
Q Consensus 678 ~~tk~~~~~l~~~GI---p---tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~--~g--sS~GV~~v~~~~e 747 (953)
+..|.+ |.++|+ | .+++..++..+ + .+...+..+.+++||+|||+-. ++ -.-||..+.+.++
T Consensus 9 y~~K~l---l~~~~~~~~~~~~~~~~~~~~~~~----~-~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~ee 80 (425)
T 3mwd_A 9 QTGKEL---LYKFICTTSAIQNRFKYARVTPDT----D-WARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDG 80 (425)
T ss_dssp HHHHHH---HHHHCCCSSCBCSTTCCEEECTTC----C-HHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHH
T ss_pred HHHHHH---HHHhccccCCccCCcceEEeCCCC----C-HHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHH
Confidence 456777 899999 4 33466665542 1 1233445678855999999965 22 2348888766555
Q ss_pred HH
Q 002207 748 LT 749 (953)
Q Consensus 748 L~ 749 (953)
..
T Consensus 81 v~ 82 (425)
T 3mwd_A 81 VK 82 (425)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 148
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=78.32 E-value=2.4 Score=51.96 Aligned_cols=64 Identities=11% Similarity=-0.114 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCCCC------ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC----CCcceEEeCCccc
Q 002207 678 VATSLALNHLADLGVL------TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG----CSTGVARLCCAED 747 (953)
Q Consensus 678 ~~tk~~~~~l~~~GIp------tp~~~~v~~~~~~~~~~~~~~~~~~~~lg~~PlvVKP~~~g----sS~GV~~v~~~~e 747 (953)
+..|++ |.++++| ++++..+...+. .+.+.+..+.|+++|+|||+-..- -.-||..+.+.++
T Consensus 9 y~aK~l---l~~~~~~~~~~~~~~~~~~v~~~~~-----~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eE 80 (829)
T 3pff_A 9 QTGKEL---LYKFICTTSAIQNRFKYARVTPDTD-----WARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDG 80 (829)
T ss_dssp HHHHHH---HHHHCCCSSCBCSTTCCEEECTTCC-----HHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHH
T ss_pred HHHHHH---HHHhCccccccccCCceEEeCCCCC-----HHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHH
Confidence 456777 8999998 567777765431 122334446674499999985432 1237888766666
Q ss_pred HH
Q 002207 748 LT 749 (953)
Q Consensus 748 L~ 749 (953)
..
T Consensus 81 a~ 82 (829)
T 3pff_A 81 VK 82 (829)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 149
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=71.28 E-value=23 Score=31.79 Aligned_cols=94 Identities=15% Similarity=0.257 Sum_probs=55.9
Q ss_pred CcCeEEEEec-CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcch
Q 002207 76 RVLRVGLICG-GPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLS 154 (953)
Q Consensus 76 ~~~kV~vl~G-G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (953)
+.|||+++|| |-++ |+ -+..+-+++.+.|+++..-.++. .
T Consensus 3 ~~mkIlvvC~~G~~T----Sl-l~~kl~~~~~~~gi~~~i~~~~~-----------------~----------------- 43 (109)
T 2l2q_A 3 GSMNILLVCGAGMST----SM-LVQRIEKYAKSKNINATIEAIAE-----------------T----------------- 43 (109)
T ss_dssp CCEEEEEESSSSCSS----CH-HHHHHHHHHHHHTCSEEEEEECS-----------------T-----------------
T ss_pred CceEEEEECCChHhH----HH-HHHHHHHHHHHCCCCeEEEEecH-----------------H-----------------
Confidence 4478999997 5555 32 25688888888888754211100 0
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHHHhccHHHHHH
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACRQAFDKYDASL 211 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~ 211 (953)
++... ..++|+|+...+=.+- ...++..++..++|++-=++.... .+|+....+
T Consensus 44 ~~~~~-~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~I~~~~y~-~~d~~~vl~ 97 (109)
T 2l2q_A 44 RLSEV-VDRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEIINTIDYG-TMNGEKVLQ 97 (109)
T ss_dssp THHHH-TTTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEECCHHHHH-HTCHHHHHH
T ss_pred HHHhh-cCCCCEEEECCccHHH-HHHHHHHhcccCCCEEEEChHHhc-cCCHHHHHH
Confidence 00111 2368999998864332 234566666679999665666554 467665543
No 150
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=58.46 E-value=25 Score=35.07 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.1
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEE
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRC 114 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~ 114 (953)
+|+|+|+||.. ...+.-...|+.+-+.|.+.|+.++.
T Consensus 13 ~~~I~Vfg~s~-~~~~~~~~~A~~lg~~la~~g~~lv~ 49 (189)
T 3sbx_A 13 RWTVAVYCAAA-PTHPELLELAGAVGAAIAARGWTLVW 49 (189)
T ss_dssp CCEEEEECCSS-CCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEEEEeCC-CCChHHHHHHHHHHHHHHHCCCEEEE
Confidence 47899998766 44444456799999999999998763
No 151
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=57.32 E-value=29 Score=30.44 Aligned_cols=31 Identities=6% Similarity=0.074 Sum_probs=23.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCC-CEEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDD-LLVRCYYI 117 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g-~~V~~i~i 117 (953)
+||+|+.+|. -|+.+++.|.+.| ++|+.++.
T Consensus 6 ~~v~I~G~G~---------iG~~~~~~l~~~g~~~v~~~~r 37 (118)
T 3ic5_A 6 WNICVVGAGK---------IGQMIAALLKTSSNYSVTVADH 37 (118)
T ss_dssp EEEEEECCSH---------HHHHHHHHHHHCSSEEEEEEES
T ss_pred CeEEEECCCH---------HHHHHHHHHHhCCCceEEEEeC
Confidence 5888886553 3889999999999 88876653
No 152
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=56.50 E-value=54 Score=29.51 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=57.8
Q ss_pred CcCeEEEEec-CCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcch
Q 002207 76 RVLRVGLICG-GPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLS 154 (953)
Q Consensus 76 ~~~kV~vl~G-G~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (953)
++|||+++|+ |-|+ |+. +..+-++.++.|+++......-. .+.
T Consensus 5 ~~mkIlL~C~aGmST----sll-v~km~~~a~~~gi~v~i~a~~~~-----------------~~~-------------- 48 (108)
T 3nbm_A 5 KELKVLVLCAGSGTS----AQL-ANAINEGANLTEVRVIANSGAYG-----------------AHY-------------- 48 (108)
T ss_dssp CCEEEEEEESSSSHH----HHH-HHHHHHHHHHHTCSEEEEEEETT-----------------SCT--------------
T ss_pred cCceEEEECCCCCCH----HHH-HHHHHHHHHHCCCceEEEEcchH-----------------HHH--------------
Confidence 4689999986 4454 332 56777777778888764321110 000
Q ss_pred hHHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEECCCHHHHH-HhccHHHH
Q 002207 155 EFAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVGTGSRACR-QAFDKYDA 209 (953)
Q Consensus 155 ~~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvGs~~~a~~-i~~DK~~~ 209 (953)
....++|+|+..-|=.+- -..++..++..|+|+.-=+..... ..+|=...
T Consensus 49 ----~~~~~~DvvLLgPQV~y~-~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~g~~v 99 (108)
T 3nbm_A 49 ----DIMGVYDLIILAPQVRSY-YREMKVDAERLGIQIVATRGMEYIHLTKSPSKA 99 (108)
T ss_dssp ----TTGGGCSEEEECGGGGGG-HHHHHHHHTTTTCEEEECCHHHHHHHHTCHHHH
T ss_pred ----hhccCCCEEEEChHHHHH-HHHHHHHhhhcCCcEEEeCHHHhhhhhCCHHHH
Confidence 001258999887653332 345788888899999888888776 35665443
No 153
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=56.27 E-value=36 Score=31.32 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=25.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
.+|+|+......++- |..+++.|.+.||+|+++.
T Consensus 5 ~siAVVGaS~~~~~~-----g~~v~~~L~~~g~~V~pVn 38 (122)
T 3ff4_A 5 KKTLILGATPETNRY-----AYLAAERLKSHGHEFIPVG 38 (122)
T ss_dssp CCEEEETCCSCTTSH-----HHHHHHHHHHHTCCEEEES
T ss_pred CEEEEEccCCCCCCH-----HHHHHHHHHHCCCeEEEEC
Confidence 579998544444332 8899999999999988765
No 154
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=53.56 E-value=50 Score=30.93 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=24.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
.+|+|+.-+....+ -|..+++.|.+.||+|++++
T Consensus 14 ~~vaVvGas~~~g~-----~G~~~~~~l~~~G~~v~~vn 47 (140)
T 1iuk_A 14 KTIAVLGAHKDPSR-----PAHYVPRYLREQGYRVLPVN 47 (140)
T ss_dssp CEEEEETCCSSTTS-----HHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCCCCCC-----hHHHHHHHHHHCCCEEEEeC
Confidence 47999955443322 28889999999999866543
No 155
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=52.00 E-value=34 Score=32.35 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=25.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
.+|+|+.-|....+ -|..+++.|.+.||+|++++.
T Consensus 14 ~~IavIGas~~~g~-----~G~~~~~~L~~~G~~v~~vnp 48 (145)
T 2duw_A 14 RTIALVGASDKPDR-----PSYRVMKYLLDQGYHVIPVSP 48 (145)
T ss_dssp CCEEEESCCSCTTS-----HHHHHHHHHHHHTCCEEEECS
T ss_pred CEEEEECcCCCCCC-----hHHHHHHHHHHCCCEEEEeCC
Confidence 47999965544322 278899999999999766543
No 156
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=51.79 E-value=22 Score=39.21 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=42.4
Q ss_pred EEEeeCCCCCceeEEEeCCHHHHHH---HHHHhHhcC----CCCcEEEeccCCCCeEEEEEEEEeCCCCccccEEecce
Q 002207 252 VVVKPTRAGSSIGVTVAYGVIDSLK---KAKGIILEG----IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPT 323 (953)
Q Consensus 252 vvVKP~~~gsS~GV~~v~~~~el~~---~a~~~~~~~----~~~~vlVEefI~Gg~E~tv~Vl~~~~g~~~~~v~l~~~ 323 (953)
||||...|..|.||..|++.+|+.. +.+.-++.. .-++|||||-|.- .| .++ +...+|++....
T Consensus 280 V~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T-~E----~~~---~avAEPVVYmid 350 (432)
T 3k1t_A 280 VIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYT-FE----HLK---DAVAEPVIYMMD 350 (432)
T ss_dssp EEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCC-CE----EET---TEEEEEEEEEET
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcch-hh----hhC---CccccceEEEEC
Confidence 8999999999999999999988542 333333211 2358999999973 44 232 223456665544
No 157
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=47.87 E-value=1.5e+02 Score=26.60 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=24.9
Q ss_pred CcCeEEEEec-CCCCchHhHHHHHHHHHHHhhcCCCEEE
Q 002207 76 RVLRVGLICG-GPSAERGISLNSARSVLDHIQGDDLLVR 113 (953)
Q Consensus 76 ~~~kV~vl~G-G~S~E~evSl~Sa~~V~~aL~~~g~~V~ 113 (953)
+++||+|+|| |.++ |..-+..+-+++.+.|+++.
T Consensus 20 ~~kkIlvvC~sG~gT----S~ll~~kl~~~~~~~gi~~~ 54 (113)
T 1tvm_A 20 SKRKIIVACGGAVAT----STMAAEEIKELCQSHNIPVE 54 (113)
T ss_dssp SSEEEEEESCSCSSH----HHHHHHHHHHHHHHTTCCEE
T ss_pred cccEEEEECCCCHHH----HHHHHHHHHHHHHHcCCeEE
Confidence 3468999998 5554 45457778888888898753
No 158
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=47.70 E-value=5.8 Score=43.83 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=50.4
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccccccCcchh
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLAQGFGSLSE 155 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (953)
++|||+||.+|. .|+.+++.|.+ .++|...+++.. .. ...... .. ...+ .......
T Consensus 15 ~~mkilvlGaG~---------vG~~~~~~L~~-~~~v~~~~~~~~--~~----~~~~~~-~~--~~~~-----d~~d~~~ 70 (365)
T 3abi_A 15 RHMKVLILGAGN---------IGRAIAWDLKD-EFDVYIGDVNNE--NL----EKVKEF-AT--PLKV-----DASNFDK 70 (365)
T ss_dssp -CCEEEEECCSH---------HHHHHHHHHTT-TSEEEEEESCHH--HH----HHHTTT-SE--EEEC-----CTTCHHH
T ss_pred CccEEEEECCCH---------HHHHHHHHHhc-CCCeEEEEcCHH--HH----HHHhcc-CC--cEEE-----ecCCHHH
Confidence 457999996663 37888888865 588876654331 00 000000 00 0000 0000111
Q ss_pred HHHhhccCcCEEEEcCCCCCCCchHHHHHHHcCCccEEC
Q 002207 156 FAEHLAANVDIVFPTIHGRFGEDGGIQEVLEKYNVPFVG 194 (953)
Q Consensus 156 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~~gIpyvG 194 (953)
+ ..+..+.|+|++++.+.++ -.+...|-..|+.|+-
T Consensus 71 l-~~~~~~~DvVi~~~p~~~~--~~v~~~~~~~g~~yvD 106 (365)
T 3abi_A 71 L-VEVMKEFELVIGALPGFLG--FKSIKAAIKSKVDMVD 106 (365)
T ss_dssp H-HHHHTTCSEEEECCCGGGH--HHHHHHHHHHTCEEEE
T ss_pred H-HHHHhCCCEEEEecCCccc--chHHHHHHhcCcceEe
Confidence 1 2223479999999976543 3567777778888875
No 159
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=47.61 E-value=13 Score=39.53 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=29.3
Q ss_pred hcCCCcC--eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 72 ARGGRVL--RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 72 ~~~~~~~--kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
+.|++++ ||+|+.||.+ .| |+.+.+.|.++|++|+.++.
T Consensus 21 ~~Ms~rL~gKvalVTGas~---GI----G~aiA~~la~~Ga~V~i~~r 61 (273)
T 4fgs_A 21 QSMTQRLNAKIAVITGATS---GI----GLAAAKRFVAEGARVFITGR 61 (273)
T ss_dssp ----CTTTTCEEEEESCSS---HH----HHHHHHHHHHTTCEEEEEES
T ss_pred hhhcchhCCCEEEEeCcCC---HH----HHHHHHHHHHCCCEEEEEEC
Confidence 4566543 8999999876 45 99999999999999987654
No 160
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=47.22 E-value=16 Score=36.10 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=30.7
Q ss_pred CCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 75 ~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
+++|||+||+|. ..-+-.-++.+.+.|.+.|++|..+++..
T Consensus 2 ~~mmkilii~~S----~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 2 SCKPNILVLFYG----YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp -CCCEEEEEECC----SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCCcEEEEEEeC----ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 344799999987 33455568888888988899998887644
No 161
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=43.24 E-value=8.3 Score=44.20 Aligned_cols=32 Identities=6% Similarity=0.219 Sum_probs=26.6
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
.|||.|+.+|.- |+++++.|...||+|+.++-
T Consensus 3 ~M~iiI~G~G~v---------G~~la~~L~~~~~~v~vId~ 34 (461)
T 4g65_A 3 AMKIIILGAGQV---------GGTLAENLVGENNDITIVDK 34 (461)
T ss_dssp CEEEEEECCSHH---------HHHHHHHTCSTTEEEEEEES
T ss_pred cCEEEEECCCHH---------HHHHHHHHHHCCCCEEEEEC
Confidence 479988877764 89999999999999987753
No 162
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=43.24 E-value=63 Score=30.34 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=25.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCC
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNL 121 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g 121 (953)
.+|+|+..|....+ -|..+++.|.+.||+|+. +++.+
T Consensus 23 ~~iaVVGas~~~g~-----~G~~~~~~l~~~G~~v~~--Vnp~~ 59 (144)
T 2d59_A 23 KKIALVGASPKPER-----DANIVMKYLLEHGYDVYP--VNPKY 59 (144)
T ss_dssp CEEEEETCCSCTTS-----HHHHHHHHHHHTTCEEEE--ECTTC
T ss_pred CEEEEEccCCCCCc-----hHHHHHHHHHHCCCEEEE--ECCCC
Confidence 58999965544332 277888999999998654 45543
No 163
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=42.34 E-value=65 Score=30.08 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=25.6
Q ss_pred CCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecCC
Q 002207 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRNL 121 (953)
Q Consensus 75 ~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~g 121 (953)
-+..+|+|+.- |...+- -|..+++.|.+.||+|++ +++..
T Consensus 12 ~~p~~IavIGa--S~~~g~---~G~~~~~~L~~~G~~V~~--vnp~~ 51 (138)
T 1y81_A 12 KEFRKIALVGA--SKNPAK---YGNIILKDLLSKGFEVLP--VNPNY 51 (138)
T ss_dssp --CCEEEEETC--CSCTTS---HHHHHHHHHHHTTCEEEE--ECTTC
T ss_pred cCCCeEEEEee--cCCCCC---HHHHHHHHHHHCCCEEEE--eCCCC
Confidence 34568999954 332221 288899999999998664 44543
No 164
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=40.98 E-value=49 Score=39.48 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=42.7
Q ss_pred HHHHHHcC--CccEECCCHHHHHHhccHHHHHHHHHHCCCCCCCeEEecCCccchhhhhhhhhhcCCCCCCCcEEEeeCC
Q 002207 181 IQEVLEKY--NVPFVGTGSRACRQAFDKYDASLEMSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR 258 (953)
Q Consensus 181 iq~lle~~--gIpyvGs~~~a~~i~~DK~~~k~~l~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVKP~~ 258 (953)
+-.++..- ++.++.+ ....+..||..+..+....- .-|+++-..-+.. ..+.. -.+|+||..
T Consensus 488 ~~~~l~~~~~~v~~ieP--~wk~LlsNKaiLalLW~l~p--~hp~LLpt~f~~~-~~~~~-----------~~yV~KPi~ 551 (652)
T 2vob_A 488 LCDLLLGDDWEILYFEP--MWKVIPSNKAILPMIYHNHP--EHPAILKAEYELT-DELRK-----------HGYAKKPIV 551 (652)
T ss_dssp HHHHHSSSCTTSEEESC--GGGGTTTSTTHHHHHHHHCT--TCTTBCCEESSCC-HHHHH-----------HCEEEEECC
T ss_pred HHHHHhcCCCceEEeCh--hHHHhhcCHHHHHHHHhccc--CCCCCCchhhcCC-Ccccc-----------CCeEeccCC
Confidence 44566666 7888865 45578889999988777421 1122111111111 01110 148999999
Q ss_pred CCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCC
Q 002207 259 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 297 (953)
Q Consensus 259 ~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~ 297 (953)
|..|.||.+...-.+..+.....+ .+...|+|+|++
T Consensus 552 gReG~nV~I~~~~~~~~~~~~g~y---~~~~~IyQe~~~ 587 (652)
T 2vob_A 552 GRVGSNVIITSGDGVVHAESGGKY---GKRNMIYQQLFE 587 (652)
T ss_dssp ------------------------------CEEEEECCC
T ss_pred CCCCCCEEEEcCCchhhhhccccc---CCCCeEEEeccc
Confidence 999999998764333222222111 246789999996
No 165
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=38.63 E-value=14 Score=43.97 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=59.3
Q ss_pred HHHHHHHcCCccEECCCHHHHHHhccHHHHHHHHHHCCCC-CC---CeEEecCCccchhhhhhhhhhcCCCCCCCcEEEe
Q 002207 180 GIQEVLEKYNVPFVGTGSRACRQAFDKYDASLEMSKQGFI-TV---PSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVK 255 (953)
Q Consensus 180 ~iq~lle~~gIpyvGs~~~a~~i~~DK~~~k~~l~~~Gip-tp---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvvVK 255 (953)
.+-.+++.-+++++.+.- ..+..||..+..+.+.+ | .| ++. +.... .+.. ..+|+|
T Consensus 474 ~ll~~l~~~~v~iieP~~--~~llsNKailalLw~l~--p~hp~LLpT~-f~~~~----~l~~-----------~~yV~K 533 (619)
T 2io8_A 474 RLIDVLLRPEVLVFEPLW--TVIPGNKAILPILWSLF--PHHRYLLDTD-FTVND----ELVK-----------TGYAVK 533 (619)
T ss_dssp CHHHHHTCTTCEEESCGG--GGTTTSTTHHHHHHHHS--TTCTTCCCEE-SSCCH----HHHH-----------HCEEEE
T ss_pred HHHHHHHhCCCEEECHHH--HHHhhhHHHHHHHHHhC--CCCCCCCCee-ecCCc----cccc-----------CCEEEc
Confidence 366777778899997643 35689999999888865 3 22 333 21111 1110 148999
Q ss_pred eCCCCCceeEEEeCCHHHHHHHHHHhHhcCCCCcEEEeccCCC
Q 002207 256 PTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG 298 (953)
Q Consensus 256 P~~~gsS~GV~~v~~~~el~~~a~~~~~~~~~~~vlVEefI~G 298 (953)
|..|..|.||.++...++..+.....+ .+..+|.|+|++=
T Consensus 534 Pi~gReG~nV~i~~~~~~~~~~~~~~y---~~~~~IyQe~~~l 573 (619)
T 2io8_A 534 PIAGRCGSNIDLVSHHEEVLDKTSGKF---AEQKNIYQQLWCL 573 (619)
T ss_dssp ETTCCTTTTCEEECTTSCEEEECCCTT---TTSCEEEEECCCC
T ss_pred cCCCCCCCCEEEEeCCChhHhhccccc---cCCCeEEEEecCC
Confidence 999999999999875222111111101 2356888999963
No 166
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=37.99 E-value=25 Score=40.22 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=32.3
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEe--CCcccHHHHHHHHHHHHhhCCCCCcccccccccCCCCCCCeEEEecccc
Q 002207 714 WHELTSKLQCKTLCVKPARDGCSTGVARL--CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 791 (953)
Q Consensus 714 ~~~~~~~lg~~PlvVKP~~~gsS~GV~~v--~~~~eL~~~~~al~~a~~~~~~~~~~~~~~~~~~p~~~~~~vlVEefI~ 791 (953)
.+.+.+++ --+||||+.+.++.|+.+= .+.++++++ ++...+. +..+|+|+++.
T Consensus 355 ~~~vl~~l--~~lViKp~~g~gg~gv~iG~~~s~~e~~~~---~~~i~~~-------------------p~~yIaQe~v~ 410 (474)
T 3n6x_A 355 LKYVLDNL--AELVVKEVQGSGGYGMLVGPAASKQELEDF---RQRILAN-------------------PANYIAQPTLA 410 (474)
T ss_dssp HHHHHHSG--GGEEEEECCCE-----EEGGGCCHHHHHHH---HHHHHHS-------------------GGGEEEEECCC
T ss_pred HHHHHhch--hheEEEecCCCCCCceEECCcCCHHHHHHH---HHHHHhC-------------------CCCEEEeeccC
Confidence 45566666 3789999999999999763 334455543 2322222 45699999997
Q ss_pred Cc
Q 002207 792 TD 793 (953)
Q Consensus 792 G~ 793 (953)
-.
T Consensus 411 ls 412 (474)
T 3n6x_A 411 LS 412 (474)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 167
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=36.70 E-value=34 Score=34.90 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=32.2
Q ss_pred cCeEEEEecCCCCc---hHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 77 VLRVGLICGGPSAE---RGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 77 ~~kV~vl~GG~S~E---~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
+|||+||.|.+..+ ...+-.=++.+.+.|++.|++|..++++.
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~ 70 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ 70 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC
Confidence 36999999998643 34444446778888888999999887653
No 168
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=35.78 E-value=22 Score=35.04 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=27.3
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|+.+|||+||+|.+... ..+..=++.+.+.|+ .|++|..+++
T Consensus 3 m~~~Mkilii~gS~r~~-g~t~~la~~i~~~l~-~g~~v~~~dl 44 (193)
T 1rtt_A 3 LSDDIKVLGISGSLRSG-SYNSAALQEAIGLVP-PGMSIELADI 44 (193)
T ss_dssp ----CEEEEEESCCSTT-CHHHHHHHHHHTTCC-TTCEEEECCC
T ss_pred CCCCceEEEEECCCCCC-ChHHHHHHHHHHhcc-CCCeEEEEeH
Confidence 44558999999987643 455555666666676 6888887665
No 169
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=35.75 E-value=31 Score=34.78 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=34.6
Q ss_pred cCeEEEEecCCC-CchHhHHHHHHHHHHHhhcC--CCEEEEEEEe
Q 002207 77 VLRVGLICGGPS-AERGISLNSARSVLDHIQGD--DLLVRCYYID 118 (953)
Q Consensus 77 ~~kV~vl~GG~S-~E~evSl~Sa~~V~~aL~~~--g~~V~~i~id 118 (953)
+|||++|.|-+. .+...|..=++.+++.+++. |++|..+++.
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~ 48 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLY 48 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGG
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 369999999887 47778888889999999876 8999877653
No 170
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=35.33 E-value=36 Score=36.16 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=30.7
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
+.|||+||+|=+..+ ..+-.=++.+++.|++.|++|..+++.
T Consensus 21 ~~MKiLII~aHP~~~-S~n~aL~~~~~~~l~~~G~eV~v~DLy 62 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPR-SLNGALKNFAIRHLQQAGHEVQVSDLY 62 (280)
T ss_dssp -CCEEEEEECCSCTT-SHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred hCCeEEEEEeCCCCc-cHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 458999999877532 233333678899999999999988753
No 171
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=34.38 E-value=29 Score=34.73 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=34.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcC--CCEEEEEEEe
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGD--DLLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~--g~~V~~i~id 118 (953)
|||++|.|.+..+...|-.=++.+++.|++. |++|..+++.
T Consensus 2 mkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~ 44 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVG 44 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 6899999998877677777788999999876 8999887753
No 172
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=34.31 E-value=34 Score=33.52 Aligned_cols=41 Identities=7% Similarity=-0.069 Sum_probs=33.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCC--CEEEEEEEe
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDD--LLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g--~~V~~i~id 118 (953)
|||+||+|.+..|...|-.=++.+.+.|++.| ++|..+++.
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 69999999988777788888889999998765 888877653
No 173
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=34.25 E-value=43 Score=33.26 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=31.3
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
+|||+||+|.+ ..-+-.-++.+.+.|.+.|.+|..+++..
T Consensus 6 mmkilii~~S~---~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 6 PVKLAIVFYSS---TGTGYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCEEEEEECCS---SSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCeEEEEEECC---CChHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 47999999866 34455568889999988999998887644
No 174
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=33.84 E-value=26 Score=37.19 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=28.0
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
|+++|||+||..|.- |..+...|.+.||+|..++.++
T Consensus 12 M~~~~~I~vIG~G~m---------G~~~A~~l~~~G~~V~~~dr~~ 48 (296)
T 3qha_A 12 TTEQLKLGYIGLGNM---------GAPMATRMTEWPGGVTVYDIRI 48 (296)
T ss_dssp ---CCCEEEECCSTT---------HHHHHHHHTTSTTCEEEECSST
T ss_pred ccCCCeEEEECcCHH---------HHHHHHHHHHCCCeEEEEeCCH
Confidence 555679999987764 8889999999999998775444
No 175
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=33.72 E-value=20 Score=35.67 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
..|+||.||++ |..+...|.+.|++|.++.
T Consensus 3 ~dV~IIGaGpa---------GL~aA~~La~~G~~V~v~E 32 (336)
T 3kkj_A 3 VPIAIIGTGIA---------GLSAAQALTAAGHQVHLFD 32 (336)
T ss_dssp CCEEEECCSHH---------HHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEECcCHH---------HHHHHHHHHHCCCCEEEEE
Confidence 47999999998 7788888999999998764
No 176
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=33.69 E-value=24 Score=32.12 Aligned_cols=31 Identities=6% Similarity=-0.020 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|||+|+.+|.- |..+++.|.+.|++|..++.
T Consensus 5 m~i~IiG~G~i---------G~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 5 MYIIIAGIGRV---------GYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp CEEEEECCSHH---------HHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCHH---------HHHHHHHHHhCCCeEEEEEC
Confidence 68998855542 88889999999999886643
No 177
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=33.27 E-value=34 Score=39.16 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=27.5
Q ss_pred cEEEeeCCCCCceeEEEe--CCHHHHHHHHHHhHhcCCCCcEEEeccCCC
Q 002207 251 KVVVKPTRAGSSIGVTVA--YGVIDSLKKAKGIILEGIDDRVVVELFLEG 298 (953)
Q Consensus 251 PvvVKP~~~gsS~GV~~v--~~~~el~~~a~~~~~~~~~~~vlVEefI~G 298 (953)
-+||||+.+.+|.|+.+- .+.++..+...++.. ....+++|+++.-
T Consensus 364 ~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~--~p~~yIaQe~v~l 411 (474)
T 3n6x_A 364 ELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILA--NPANYIAQPTLAL 411 (474)
T ss_dssp GEEEEECCCE-----EEGGGCCHHHHHHHHHHHHH--SGGGEEEEECCCC
T ss_pred heEEEecCCCCCCceEECCcCCHHHHHHHHHHHHh--CCCCEEEeeccCC
Confidence 599999999999999773 345554444433332 3456999999974
No 178
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=31.47 E-value=33 Score=34.67 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=26.2
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCC-CEEEEEEE
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDD-LLVRCYYI 117 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g-~~V~~i~i 117 (953)
+.||..+|.||.+. -|+.+++.|.+.| ++|+.+.-
T Consensus 21 ~~mk~vlVtGatG~-------iG~~l~~~L~~~G~~~V~~~~R 56 (236)
T 3qvo_A 21 GHMKNVLILGAGGQ-------IARHVINQLADKQTIKQTLFAR 56 (236)
T ss_dssp -CCEEEEEETTTSH-------HHHHHHHHHTTCTTEEEEEEES
T ss_pred CcccEEEEEeCCcH-------HHHHHHHHHHhCCCceEEEEEc
Confidence 34677777777663 3999999999999 88886643
No 179
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=30.19 E-value=32 Score=36.26 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=24.3
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCY 115 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i 115 (953)
|.++|||+||..|.- |..+...|.+.|++|..+
T Consensus 1 M~~~~~i~iiG~G~~---------G~~~a~~l~~~g~~V~~~ 33 (301)
T 3cky_A 1 MEKSIKIGFIGLGAM---------GKPMAINLLKEGVTVYAF 33 (301)
T ss_dssp ---CCEEEEECCCTT---------HHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECccHH---------HHHHHHHHHHCCCeEEEE
Confidence 455689999977765 777888888889998754
No 180
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=30.18 E-value=28 Score=38.06 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=25.7
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
|||+|+.||++ |......|.+.|++|.++.
T Consensus 2 m~V~IVGaGpa---------Gl~~A~~L~~~G~~v~v~E 31 (412)
T 4hb9_A 2 MHVGIIGAGIG---------GTCLAHGLRKHGIKVTIYE 31 (412)
T ss_dssp CEEEEECCSHH---------HHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECcCHH---------HHHHHHHHHhCCCCEEEEe
Confidence 79999999987 7777888999999998663
No 181
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=29.54 E-value=29 Score=34.58 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 75 ~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
.++|||+|+ ||.+. -|+.+++.|.+.|++|+.+.
T Consensus 2 ~~m~~ilIt-GatG~-------iG~~l~~~L~~~g~~V~~~~ 35 (227)
T 3dhn_A 2 EKVKKIVLI-GASGF-------VGSALLNEALNRGFEVTAVV 35 (227)
T ss_dssp -CCCEEEEE-TCCHH-------HHHHHHHHHHTTTCEEEEEC
T ss_pred CCCCEEEEE-cCCch-------HHHHHHHHHHHCCCEEEEEE
Confidence 333577655 44432 39999999999999998664
No 182
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=29.24 E-value=26 Score=32.30 Aligned_cols=32 Identities=6% Similarity=-0.045 Sum_probs=24.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
++|+|+.+|. + |+.+++.|.+.|++|+.++.+
T Consensus 7 ~~v~I~G~G~-----i----G~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGSEA-----A----GVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSEEEECCSH-----H----HHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCH-----H----HHHHHHHHHHCCCeEEEEECC
Confidence 4787776654 2 899999999999999877643
No 183
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=28.86 E-value=45 Score=33.07 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=34.1
Q ss_pred CeEEEEecCCC-CchHhHHHHHHHHHHHhhcCC--CEEEEEEEe
Q 002207 78 LRVGLICGGPS-AERGISLNSARSVLDHIQGDD--LLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S-~E~evSl~Sa~~V~~aL~~~g--~~V~~i~id 118 (953)
|||+||.|.+. .|...|-.=++.+++.|++.| ++|..+++.
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 68999999888 577788777899999998876 999887764
No 184
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=28.78 E-value=1.7e+02 Score=31.17 Aligned_cols=32 Identities=9% Similarity=-0.219 Sum_probs=23.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|||+|+.| .. - -|+.++++|.+.||+|+++.-
T Consensus 11 ~~IlVtGa-tG---~----iG~~l~~~L~~~g~~V~~l~R 42 (346)
T 3i6i_A 11 GRVLIAGA-TG---F----IGQFVATASLDAHRPTYILAR 42 (346)
T ss_dssp CCEEEECT-TS---H----HHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECC-Cc---H----HHHHHHHHHHHCCCCEEEEEC
Confidence 57777765 22 1 299999999999999987654
No 185
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=28.52 E-value=47 Score=34.28 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
-|++|+.|+.|. |.| |+.+.+.|.++|++|+..+.+
T Consensus 6 gK~alVTGaa~~-~GI----G~aiA~~la~~Ga~Vvi~~r~ 41 (256)
T 4fs3_A 6 NKTYVIMGIANK-RSI----AFGVAKVLDQLGAKLVFTYRK 41 (256)
T ss_dssp TCEEEEECCCST-TCH----HHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCCCC-chH----HHHHHHHHHHCCCEEEEEECC
Confidence 379999987664 677 999999999999999877643
No 186
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=27.89 E-value=1.6e+02 Score=31.05 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=27.1
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCC-CEEEEE
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDD-LLVRCY 115 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g-~~V~~i 115 (953)
+++||+||.|+. .|+ .-.....+.+.|++.| ++|...
T Consensus 3 ~~~kvLiv~G~~--~H~-~~~~~~~l~~~l~~~g~f~V~~~ 40 (281)
T 4e5v_A 3 KPIKTLLITGQN--NHN-WQVSHVVLKQILENSGRFDVDFV 40 (281)
T ss_dssp CCEEEEEEESCC--SSC-HHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CceEEEEEcCCC--CCC-hHHHHHHHHHHHHhcCCEEEEEE
Confidence 468999996655 587 4455677778888888 888754
No 187
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=27.88 E-value=1.2e+02 Score=29.17 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=29.7
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
+++||+||.-|..-. .+-=.++..+.+.|++.|++|..+.+-+
T Consensus 12 ~~~rv~Ii~tGdElg-~i~Dsn~~~l~~~L~~~G~~v~~~~iv~ 54 (169)
T 1y5e_A 12 KEVRCKIVTISDTRT-EETDKSGQLLHELLKEAGHKVTSYEIVK 54 (169)
T ss_dssp CCCEEEEEEECSSCC-TTTCHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred cCCEEEEEEEcCccC-eeccChHHHHHHHHHHCCCeEeEEEEeC
Confidence 457999998776542 2222347778888999999998665433
No 188
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=27.75 E-value=75 Score=32.12 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=28.9
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
|++++||.|-..|.|+ -.-+..+++.|++.|++|.++.
T Consensus 1 m~~~k~IllgvTGaia-----a~k~~~ll~~L~~~g~eV~vv~ 38 (209)
T 3zqu_A 1 MSGPERITLAMTGASG-----AQYGLRLLDCLVQEEREVHFLI 38 (209)
T ss_dssp CCSCSEEEEEECSSSC-----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEEEECHHH-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 6667899888777765 2237788899999999998763
No 189
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=26.94 E-value=56 Score=35.35 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=27.8
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
+.++|||++++........-.-.....++++|.+.||+|..+..
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 60 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAP 60 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 34558999998544333122223467889999999999987654
No 190
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=26.28 E-value=32 Score=36.97 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=27.4
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCC-EEEEEEEec
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDL-LVRCYYIDR 119 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~-~V~~i~id~ 119 (953)
|.++|||+||.+|.- |..+...|...|+ +|..++++.
T Consensus 1 M~~~~kI~VIGaG~~---------G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 1 MIERRKIAVIGSGQI---------GGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCCCCEEEEECCSHH---------HHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCCCEEEEECCCHH---------HHHHHHHHHhCCCceEEEEeCCc
Confidence 455689999988743 6667788877788 887776654
No 191
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=26.25 E-value=52 Score=33.60 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=32.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
|||+||.|.+.. ...+-.=++.+++.|++.|++|..+++..
T Consensus 2 mkiLiI~gspr~-~S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 2 KKVLIVYAHQEP-KSFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CEEEEEECCSCT-TSHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CEEEEEEeCCCC-CCHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 699999998875 34455557889999988899999887643
No 192
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=25.65 E-value=59 Score=33.67 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=29.8
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN 120 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~ 120 (953)
|++|+.||.+ .| |+.+.+.|.++|++|+..+.+.+
T Consensus 12 K~alVTGas~---GI----G~aia~~la~~Ga~Vv~~~~~~~ 46 (242)
T 4b79_A 12 QQVLVTGGSS---GI----GAAIAMQFAELGAEVVALGLDAD 46 (242)
T ss_dssp CEEEEETTTS---HH----HHHHHHHHHHTTCEEEEEESSTT
T ss_pred CEEEEeCCCC---HH----HHHHHHHHHHCCCEEEEEeCCHH
Confidence 7999999886 45 99999999999999998876554
No 193
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=25.09 E-value=71 Score=33.29 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=27.9
Q ss_pred eEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 79 RVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 79 kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|++||.||.| .| |+.+.+.|.++|++|+..+.
T Consensus 12 K~alVTGas~---GI----G~aia~~la~~Ga~V~~~~r 43 (261)
T 4h15_A 12 KRALITAGTK---GA----GAATVSLFLELGAQVLTTAR 43 (261)
T ss_dssp CEEEESCCSS---HH----HHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeccCc---HH----HHHHHHHHHHcCCEEEEEEC
Confidence 8999999887 45 99999999999999987664
No 194
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=24.59 E-value=80 Score=32.62 Aligned_cols=31 Identities=3% Similarity=-0.046 Sum_probs=23.8
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|||+|+. .. -+ |+.+++.|.+.||+|+.+.-
T Consensus 4 ~~ilVtG--aG---~i----G~~l~~~L~~~g~~V~~~~r 34 (286)
T 3gpi_A 4 SKILIAG--CG---DL----GLELARRLTAQGHEVTGLRR 34 (286)
T ss_dssp CCEEEEC--CS---HH----HHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEEC--CC---HH----HHHHHHHHHHCCCEEEEEeC
Confidence 5888883 22 23 99999999999999987653
No 195
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=24.39 E-value=45 Score=33.22 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|||+||.|.+..+. | .-.+.+++++++.|.+|..+++
T Consensus 2 mkiLiI~gsp~~~~--s-~l~~~l~~~~~~~g~ev~~~dL 38 (192)
T 3f2v_A 2 PKTLIILAHPNISQ--S-TVHKHWSDAVRQHTDRFTVHEL 38 (192)
T ss_dssp CCEEEEECCTTGGG--C-SHHHHHHHHHTTCTTTEEEEEH
T ss_pred CEEEEEEeCCCccH--H-HHHHHHHHHHHhCCCeEEEEEc
Confidence 68999999887764 3 3477888999989998887765
No 196
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=24.17 E-value=40 Score=35.46 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 75 ~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
++.+||+||.+|.= |..+...|...||+|+.++.+
T Consensus 2 m~~~kV~VIGaG~m---------G~~iA~~la~~G~~V~l~d~~ 36 (283)
T 4e12_A 2 TGITNVTVLGTGVL---------GSQIAFQTAFHGFAVTAYDIN 36 (283)
T ss_dssp CSCCEEEEECCSHH---------HHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCEEEEECCCHH---------HHHHHHHHHhCCCeEEEEeCC
Confidence 34468999977752 888999999999999876543
No 197
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=23.70 E-value=76 Score=33.26 Aligned_cols=41 Identities=5% Similarity=-0.043 Sum_probs=32.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
|||+||.|.+.. ...|-.=++.+++.|++.|++|..+++..
T Consensus 3 mkiLiI~gSpr~-~s~t~~la~~~~~~l~~~g~eV~~~dL~~ 43 (273)
T 1d4a_A 3 RRALIVLAHSER-TSFNYAMKEAAAAALKKKGWEVVESDLYA 43 (273)
T ss_dssp CEEEEEECCSCT-TSHHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CEEEEEEeCCCC-ccHHHHHHHHHHHHHHhCCCeEEEEEccc
Confidence 699999998764 45666668888888988999999877643
No 198
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=23.60 E-value=50 Score=30.91 Aligned_cols=32 Identities=6% Similarity=-0.206 Sum_probs=24.7
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
+.+|.|+.+|.- |+.+++.|.+.|++|+.++-
T Consensus 3 ~~~vlI~G~G~v---------G~~la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 3 KDHFIVCGHSIL---------AINTILQLNQRGQNVTVISN 34 (153)
T ss_dssp CSCEEEECCSHH---------HHHHHHHHHHTTCCEEEEEC
T ss_pred CCcEEEECCCHH---------HHHHHHHHHHCCCCEEEEEC
Confidence 357887755543 89999999999999987653
No 199
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=23.53 E-value=53 Score=30.88 Aligned_cols=32 Identities=6% Similarity=-0.096 Sum_probs=25.1
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
.++|+|+.+|.- |..+++.|.+.|++|+.++.
T Consensus 19 ~~~v~IiG~G~i---------G~~la~~L~~~g~~V~vid~ 50 (155)
T 2g1u_A 19 SKYIVIFGCGRL---------GSLIANLASSSGHSVVVVDK 50 (155)
T ss_dssp CCEEEEECCSHH---------HHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEECCCHH---------HHHHHHHHHhCCCeEEEEEC
Confidence 368998866643 88899999999999886654
No 200
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=23.36 E-value=37 Score=36.69 Aligned_cols=33 Identities=6% Similarity=-0.068 Sum_probs=24.6
Q ss_pred CCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 75 GRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 75 ~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
+++|||+||..|.- |..+...|.+.|++|..++
T Consensus 2 m~~mki~iiG~G~~---------G~~~a~~L~~~g~~V~~~~ 34 (359)
T 1bg6_A 2 IESKTYAVLGLGNG---------GHAFAAYLALKGQSVLAWD 34 (359)
T ss_dssp --CCEEEEECCSHH---------HHHHHHHHHHTTCEEEEEC
T ss_pred CCcCeEEEECCCHH---------HHHHHHHHHhCCCEEEEEe
Confidence 34579999987742 7778888988999987654
No 201
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=23.22 E-value=44 Score=35.02 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCY 115 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i 115 (953)
|||+|..| ..- -|+++++.|.+.||+|+.+
T Consensus 1 MkILVTGa-tGf-------IG~~L~~~L~~~G~~V~~l 30 (298)
T 4b4o_A 1 MRVLVGGG-TGF-------IGTALTQLLNARGHEVTLV 30 (298)
T ss_dssp CEEEEETT-TSH-------HHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECC-CCH-------HHHHHHHHHHHCCCEEEEE
Confidence 68877654 221 2899999999999999865
No 202
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=22.92 E-value=91 Score=33.09 Aligned_cols=34 Identities=3% Similarity=0.065 Sum_probs=24.5
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN 120 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~ 120 (953)
.||++|.=|.= |..+.++|.+.||+|+.++.+++
T Consensus 6 ~kIgfIGLG~M---------G~~mA~~L~~~G~~V~v~dr~~~ 39 (297)
T 4gbj_A 6 EKIAFLGLGNL---------GTPIAEILLEAGYELVVWNRTAS 39 (297)
T ss_dssp CEEEEECCSTT---------HHHHHHHHHHTTCEEEEC-----
T ss_pred CcEEEEecHHH---------HHHHHHHHHHCCCeEEEEeCCHH
Confidence 47999976653 88899999999999998766543
No 203
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=22.82 E-value=55 Score=37.64 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=27.1
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
.+.|.||.||.||.. |-.+++.|++.+++|++|+
T Consensus 39 ~~~KprVVIIGgG~A---------Gl~~A~~L~~~~~~VtLId 72 (502)
T 4g6h_A 39 HSDKPNVLILGSGWG---------AISFLKHIDTKKYNVSIIS 72 (502)
T ss_dssp SCSSCEEEEECSSHH---------HHHHHHHSCTTTCEEEEEE
T ss_pred CCCCCCEEEECCcHH---------HHHHHHHhhhCCCcEEEEC
Confidence 334569999999965 6777889999999998764
No 204
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=22.81 E-value=42 Score=31.07 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=26.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
.+|+|+..|.- |+.+++.|.+.|++|+.++.++
T Consensus 8 ~~viIiG~G~~---------G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 8 NHALLVGYGRV---------GSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp SCEEEECCSHH---------HHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEECcCHH---------HHHHHHHHHHCCCCEEEEECCH
Confidence 47888876653 8999999999999998776443
No 205
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=22.72 E-value=63 Score=37.02 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=31.0
Q ss_pred hcCCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcC-CC-EEEEEEEecC
Q 002207 72 ARGGRVLRVGLICGGPSAERGISLNSARSVLDHIQGD-DL-LVRCYYIDRN 120 (953)
Q Consensus 72 ~~~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~-g~-~V~~i~id~~ 120 (953)
++|.+.|||+||..|.- |..+...|.+. || +|+.++++.+
T Consensus 13 ~~~~~~mkIaVIGlG~m---------G~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 13 KERGPIKKIGVLGMGYV---------GIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp HHHCSCCEEEEECCSTT---------HHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred hhcCCCCEEEEECcCHH---------HHHHHHHHHHhCCCCeEEEEECChh
Confidence 33455689999988875 67777888888 99 9998887664
No 206
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=22.20 E-value=86 Score=33.37 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
|||+++.+|... | ...+..++++|.+.||+|..+.
T Consensus 7 mkIl~~~~~~gG-~---~~~~~~la~~L~~~G~~V~v~~ 41 (364)
T 1f0k_A 7 KRLMVMAGGTGG-H---VFPGLAVAHHLMAQGWQVRWLG 41 (364)
T ss_dssp CEEEEECCSSHH-H---HHHHHHHHHHHHTTTCEEEEEE
T ss_pred cEEEEEeCCCcc-c---hhHHHHHHHHHHHcCCEEEEEe
Confidence 799999876531 2 2346789999999999998664
No 207
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=22.15 E-value=77 Score=32.79 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=31.8
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
.+|||++|+|.+.. ...+-.=++.+.+.+.+.|++|..+++
T Consensus 33 ~~mkIliI~GS~r~-~s~t~~La~~~~~~l~~~g~eve~idL 73 (247)
T 2q62_A 33 HRPRILILYGSLRT-VSYSRLLAEEARRLLEFFGAEVKVFDP 73 (247)
T ss_dssp SCCEEEEEECCCCS-SCHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCeEEEEEccCCC-CCHHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 34799999998764 355555678888888888999987765
No 208
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=22.09 E-value=57 Score=34.65 Aligned_cols=36 Identities=8% Similarity=-0.102 Sum_probs=25.4
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
|+++|+|+ |.||.+. -|+.+++.|.+.|++|+.++.
T Consensus 2 M~~~~~vl-VTGatG~-------iG~~l~~~L~~~G~~V~~~~r 37 (341)
T 3enk_A 2 MSTKGTIL-VTGGAGY-------IGSHTAVELLAHGYDVVIADN 37 (341)
T ss_dssp CCSSCEEE-EETTTSH-------HHHHHHHHHHHTTCEEEEECC
T ss_pred CCCCcEEE-EecCCcH-------HHHHHHHHHHHCCCcEEEEec
Confidence 55455665 5555442 299999999999999987654
No 209
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=22.06 E-value=33 Score=34.42 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=24.9
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
|||+|+.+|.- |+.+++.|.+.|++|+.++.+
T Consensus 1 M~iiIiG~G~~---------G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGGETT---------AYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CCEEEECCHHH---------HHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCHH---------HHHHHHHHHhCCCeEEEEECC
Confidence 57887776532 889999999999999877543
No 210
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=22.05 E-value=51 Score=35.63 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=26.3
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCC-EEEEEEEec
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDL-LVRCYYIDR 119 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~-~V~~i~id~ 119 (953)
|..++||+|+.+|.- |..+...|...|+ +|..++++.
T Consensus 1 m~~~~kI~VIGaG~v---------G~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 1 MAPKAKIVLVGSGMI---------GGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp -CCCCEEEEECCSHH---------HHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCCCCEEEEECCCHH---------HHHHHHHHHhCCCCeEEEEeCCH
Confidence 334579999987754 5667777877788 877777654
No 211
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=21.97 E-value=1.1e+02 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=23.6
Q ss_pred CeEEEEec-CCCCchHhHHHHHHHHHHHhhcCCCEEE
Q 002207 78 LRVGLICG-GPSAERGISLNSARSVLDHIQGDDLLVR 113 (953)
Q Consensus 78 ~kV~vl~G-G~S~E~evSl~Sa~~V~~aL~~~g~~V~ 113 (953)
+||+++|| |-|+ |+. +..+-+++++.|+++.
T Consensus 4 kkIll~Cg~G~sT----S~l-~~k~~~~~~~~gi~~~ 35 (106)
T 1e2b_A 4 KHIYLFSSAGMST----SLL-VSKMRAQAEKYEVPVI 35 (106)
T ss_dssp EEEEEECSSSTTT----HHH-HHHHHHHHHHSCCSEE
T ss_pred cEEEEECCCchhH----HHH-HHHHHHHHHHCCCCeE
Confidence 58999998 5565 333 5588899999998865
No 212
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=21.94 E-value=86 Score=30.51 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=30.0
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
|||+||+|.+. .-+-.-++.+.+.|.+.|++|..+++..
T Consensus 6 ~kilii~~S~~---g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 6 PYILVLYYSRH---GATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CEEEEEECCSS---SHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred ceEEEEEeCCC---ChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 59999998753 3455568888899988999998776643
No 213
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=21.85 E-value=46 Score=35.25 Aligned_cols=32 Identities=16% Similarity=0.003 Sum_probs=24.9
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
++++|+||.||++ |..++.+|.+.|++|.+++
T Consensus 4 ~~~~vvIIG~G~a---------Gl~aA~~l~~~g~~v~lie 35 (335)
T 2zbw_A 4 DHTDVLIVGAGPT---------GLFAGFYVGMRGLSFRFVD 35 (335)
T ss_dssp CEEEEEEECCSHH---------HHHHHHHHHHTTCCEEEEE
T ss_pred CcCcEEEECCCHH---------HHHHHHHHHhCCCCEEEEe
Confidence 3468999999977 6666777778899988664
No 214
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=21.85 E-value=90 Score=30.80 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=30.7
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEec
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDR 119 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~ 119 (953)
|||+||.|.+.. ...|-.=++.+.+.+ ..|++|..+++..
T Consensus 1 MkiLiI~gspr~-~s~t~~l~~~~~~~~-~~g~~v~~~dL~~ 40 (196)
T 3lcm_A 1 MKILIVYTHPNP-TSFNAEILKQVQTNL-SKEHTVSTLDLYA 40 (196)
T ss_dssp CEEEEEECCSCT-TSHHHHHHHHHHHHS-CTTSEEEEEETTT
T ss_pred CEEEEEEeCCCC-CChHHHHHHHHHHHh-cCCCeEEEEEccc
Confidence 699999998764 345566677888888 7899999877643
No 215
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=21.67 E-value=71 Score=31.92 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=25.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
.|+.+|.||.+ .+ |+.+++.|.+.|++|+.++
T Consensus 5 ~k~vlVtGasg---gi----G~~~a~~l~~~G~~V~~~~ 36 (234)
T 2ehd_A 5 KGAVLITGASR---GI----GEATARLLHAKGYRVGLMA 36 (234)
T ss_dssp CCEEEESSTTS---HH----HHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCc---HH----HHHHHHHHHHCCCEEEEEE
Confidence 46777888775 33 9999999999999988664
No 216
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1
Probab=21.59 E-value=1e+02 Score=31.72 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhC----CCCeeEeeeeecCCCCccccccccccCcccCCcEEEE-ee
Q 002207 362 FPIVVINSIREGASLLFQRLG----LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT-DI 421 (953)
Q Consensus 362 l~~~~~~~i~~~a~~~~~aLg----~~G~arVDf~~~~~~~~~~~~~~~~~~~~~dG~~~~l-EI 421 (953)
++++..+.|++.+.++++.+- -+|+--+||.+ +|+.+.+|++++. ||
T Consensus 136 ~~~ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~-------------EFG~~~~G~ivL~DEI 187 (230)
T 1kut_A 136 ATKKQAEKMKEAAVKITLALKEFFERANFELWDIKY-------------EFGLDKDGNVVLGDEI 187 (230)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEE-------------CEEECTTCCEEECSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-------------EEEEcCCCCEEEEEee
Confidence 578889999999999998764 46999999998 5888888998777 77
No 217
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=21.54 E-value=93 Score=35.03 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=27.5
Q ss_pred hcCCCcCeEEEEecCCC-----------CchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 72 ARGGRVLRVGLICGGPS-----------AERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 72 ~~~~~~~kV~vl~GG~S-----------~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
.+|+++|||+++.-..- ....=.-.....++++|.+.||+|.++...
T Consensus 2 ~~m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~ 59 (499)
T 2r60_A 2 VEMTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRR 59 (499)
T ss_dssp -----CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCC
Confidence 35777799999974211 111111123678889999999999877543
No 218
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=21.37 E-value=68 Score=33.22 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=27.5
Q ss_pred cCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 77 VLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 77 ~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
++|+++|.||.+. | |+.+++.|.+.|++|+.++.
T Consensus 4 ~~k~vlVTGas~g---I----G~~~a~~l~~~G~~V~~~~r 37 (281)
T 3m1a_A 4 SAKVWLVTGASSG---F----GRAIAEAAVAAGDTVIGTAR 37 (281)
T ss_dssp CCCEEEETTTTSH---H----HHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEEECCCCh---H----HHHHHHHHHHCCCEEEEEeC
Confidence 4578889988763 4 99999999999999986653
No 219
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=21.32 E-value=55 Score=35.97 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=26.3
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
++++|+|+.||.+ |.....+|.+.|++|.++.
T Consensus 22 ~~~dV~IVGaG~a---------Gl~~A~~La~~G~~V~v~E 53 (407)
T 3rp8_A 22 GHMKAIVIGAGIG---------GLSAAVALKQSGIDCDVYE 53 (407)
T ss_dssp -CCEEEEECCSHH---------HHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCHH---------HHHHHHHHHhCCCCEEEEe
Confidence 4579999999987 7778888889999998764
No 220
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=21.13 E-value=57 Score=35.05 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=28.4
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEecC
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYIDRN 120 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id~~ 120 (953)
|+++|||+++.....+...-.-.....++++| .||+|.++..+..
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~ 45 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQN 45 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSS
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCC
Confidence 56779999998755444333333466777788 5899987765543
No 221
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=20.97 E-value=74 Score=32.31 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=26.4
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYI 117 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~i 117 (953)
||++||.||.+ .| |+.+++.|.+.|++|+.++.
T Consensus 1 mk~vlVTGas~---gI----G~~~a~~l~~~G~~V~~~~r 33 (257)
T 1fjh_A 1 MSIIVISGCAT---GI----GAATRKVLEAAGHQIVGIDI 33 (257)
T ss_dssp CCEEEEETTTS---HH----HHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCC---HH----HHHHHHHHHHCCCEEEEEeC
Confidence 46788888876 34 99999999999999886653
No 222
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=20.91 E-value=1e+02 Score=33.44 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=29.4
Q ss_pred CcCeEEEEecCCCC-chHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 76 RVLRVGLICGGPSA-ERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 76 ~~~kV~vl~GG~S~-E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
++|||+++.....+ ...-.-.....++++|.+.||+|.++..+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~ 44 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPS 44 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 46899999854333 32222233677889999999999977643
No 223
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=20.89 E-value=1.2e+02 Score=30.75 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=28.6
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEE
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRC 114 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~ 114 (953)
++|+|+||......+.-...|+.+-+.|.+.|+.++.
T Consensus 10 ~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~ 46 (216)
T 1ydh_A 10 RKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVY 46 (216)
T ss_dssp SEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 4699988766655555566799999999999998763
No 224
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=20.64 E-value=52 Score=37.24 Aligned_cols=34 Identities=15% Similarity=0.025 Sum_probs=26.5
Q ss_pred CCCcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 74 GGRVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
|+++++|+||.||++ |..+...|.+.|++|.++.
T Consensus 1 M~~~~dVvIIGgG~a---------Gl~aA~~l~~~g~~V~liE 34 (463)
T 2r9z_A 1 MTQHFDLIAIGGGSG---------GLAVAEKAAAFGKRVALIE 34 (463)
T ss_dssp -CCCEEEEEECCSHH---------HHHHHHHHHHTTCCEEEEE
T ss_pred CCccCcEEEECCCHH---------HHHHHHHHHhCCCcEEEEc
Confidence 445579999999977 6677777877899998765
No 225
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=20.25 E-value=75 Score=32.48 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=27.5
Q ss_pred CcCeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEE
Q 002207 76 RVLRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYY 116 (953)
Q Consensus 76 ~~~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~ 116 (953)
.++|++||.||.+. | |+.+++.|.+.|++|+.++
T Consensus 5 ~~~k~vlVTGas~g---I----G~~~a~~l~~~G~~v~~~~ 38 (264)
T 3i4f_A 5 RFVRHALITAGTKG---L----GKQVTEKLLAKGYSVTVTY 38 (264)
T ss_dssp -CCCEEEETTTTSH---H----HHHHHHHHHHTTCEEEEEE
T ss_pred cccCEEEEeCCCch---h----HHHHHHHHHHCCCEEEEEc
Confidence 34688999988863 4 9999999999999998664
No 226
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=20.14 E-value=84 Score=30.90 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCchHhHHHHHHHHHHHhhcCCCEEEEEEEe
Q 002207 78 LRVGLICGGPSAERGISLNSARSVLDHIQGDDLLVRCYYID 118 (953)
Q Consensus 78 ~kV~vl~GG~S~E~evSl~Sa~~V~~aL~~~g~~V~~i~id 118 (953)
+||+||.|.+. +...|..=++.+.+.++ .|++|..+++.
T Consensus 3 ~kilii~gS~r-~~s~t~~la~~~~~~~~-~~~~v~~~dl~ 41 (192)
T 3fvw_A 3 KRILFIVGSFS-EGSFNRQLAKKAETIIG-DRAQVSYLSYD 41 (192)
T ss_dssp CEEEEEESCCS-TTCHHHHHHHHHHHHHT-TSSEEEECCCS
T ss_pred CEEEEEEcCCC-CCCHHHHHHHHHHHhcC-CCCEEEEEeCc
Confidence 58999999886 45566666788888887 68898876653
No 227
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=20.11 E-value=2.6e+02 Score=26.82 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred CCCcCeEEEEecCCCC-chHh-----HHHHHHHHHHHhhcCCCEEEEEEEecCCceeeecccccccCCCCCccccccccc
Q 002207 74 GGRVLRVGLICGGPSA-ERGI-----SLNSARSVLDHIQGDDLLVRCYYIDRNLNAYAISSAQVYSNTPADFDFKLESLA 147 (953)
Q Consensus 74 ~~~~~kV~vl~GG~S~-E~ev-----Sl~Sa~~V~~aL~~~g~~V~~i~id~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (953)
.++++||+||.-|.+. +-++ -=.+|.-+.+.|++.|++|+.+.+-+|. .+.
T Consensus 12 ~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd-----------------~~~------ 68 (178)
T 3iwt_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD-----------------KIK------ 68 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC-----------------HHH------
T ss_pred CCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC-----------------HHH------
Confidence 3456899999766531 1111 0135888999999999999866553331 000
Q ss_pred cccCcchhHHH-hh-ccCcCEEEEcCCCCCCCch-HHHHHHHcCCccE
Q 002207 148 QGFGSLSEFAE-HL-AANVDIVFPTIHGRFGEDG-GIQEVLEKYNVPF 192 (953)
Q Consensus 148 ~~~~~~~~~~~-~~-~~~~D~vf~~lhG~~GEdg-~iq~lle~~gIpy 192 (953)
+..... .. ..++|+|+..=.-+.|.|- +.+.+.+..+...
T Consensus 69 -----i~~al~~~~a~~~~DlVittGG~g~~~~D~t~ea~~~~~~~~~ 111 (178)
T 3iwt_A 69 -----ILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFDREI 111 (178)
T ss_dssp -----HHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGGCSEEC
T ss_pred -----HHHHHHHHHhcCCCCEEEecCCcccCCCCchHHHHHHhhhccc
Confidence 001111 11 2368999988766677654 4555555555543
Done!