BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002208
(953 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1498 bits (3877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/873 (83%), Positives = 772/873 (88%)
Query: 7 SLEEIKNETVDLERIPIEEVFEQLKCTREGLSSTEGANRLQIFGPNXXXXXXXXXXXXXX 66
SLE+IKNETVDLE+IPIEEVF+QLKC+REGL++ EG +R+QIFGPN
Sbjct: 3 SLEDIKNETVDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFL 62
Query: 67 GFMWNPLSWVMEXXXXXXXXXXNGEGKPPDWQDFVGIVCLLVINSTISFIEEXXXXXXXX 126
GFMWNPLSWVME NG+G+PPDWQDFVGI+CLLVINSTISFIEE
Sbjct: 63 GFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAA 122
Query: 127 XXXXXXXPKTKLLRDGKWSEEEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALT 186
PKTK+LRDGKWSE+EAAILVPGDI+SIKLGDIIPADARLLEGDPLKVDQSALT
Sbjct: 123 ALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALT 182
Query: 187 GESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA 246
GESLPVTK+PG EVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA
Sbjct: 183 GESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA 242
Query: 247 IGNFCICSIAVGMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 306
IGNFCICSIA+GM++EIIVMYPIQ RKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH
Sbjct: 243 IGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 302
Query: 307 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDHVMLLA 366
RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNL+EVF KGVEKD V+L A
Sbjct: 303 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFA 362
Query: 367 ARASRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGHWHRAS 426
A ASR ENQDAIDAA+VGMLADPKEARAGIREVHF PFNPVDKRTALTYID G+WHR S
Sbjct: 363 AMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVS 422
Query: 427 KGAPEQILALCNAKEDLKKKVHAIIDKYAERGLRSLAVARQEVPERTKESPGGPWQFVGL 486
KGAPEQIL L A DL KKV +IIDKYAERGLRSLAVARQ VPE+TKESPG PW+FVGL
Sbjct: 423 KGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGL 482
Query: 487 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDK 546
LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAI KETGRRLGMGTNMYPS++LLG K
Sbjct: 483 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHK 542
Query: 547 DASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKXXXX 606
DA++A++PVEELIEKADGFAGVFPEHKYEIVKKLQERKHI GMTGDGVNDAPALKK
Sbjct: 543 DANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIG 602
Query: 607 XXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMF 666
IVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFM
Sbjct: 603 IAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFML 662
Query: 667 IALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLAL 726
IALIW+FDFS FMVLIIAILNDGTIMTISKDRVKPSP PDSWKLKEIFATGVVLGGY A+
Sbjct: 663 IALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAI 722
Query: 727 MTVIFFWAMHETDFFPDKFGVRAIRDSEHEMMAALYLQVSIVSQALIFVTRSRSWSYLER 786
MTVIFFWA H+TDFF D FGVR+IRD+ HE+M A+YLQVSI+SQALIFVTRSRSWS++ER
Sbjct: 723 MTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVER 782
Query: 787 PGLLLVTAFVIAQLVATLIAVYANWGFARIKGVGWGWAGVIWLYSIVFYVPLDVMKFAIR 846
PG LL+ AF+IAQL+ATLIAVYANW FA+I+G+GWGWAGVIWLYSIV Y PLDV KFAIR
Sbjct: 783 PGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIR 842
Query: 847 YILSGKAWLNLLENKTAFTTKKDYGKEEREAQW 879
YILSGKAWLNL ENKTAFT KKDYGKEEREAQW
Sbjct: 843 YILSGKAWLNLFENKTAFTMKKDYGKEEREAQW 875
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 291/864 (33%), Positives = 445/864 (51%), Gaps = 65/864 (7%)
Query: 33 TREGLSSTEGANRLQIFGPNXXXXXXXXXXXXXXGFMWNPLSWVMEXXXXXXXXXXNGEG 92
TR GL+S E R + +G N GF P+ +VME
Sbjct: 84 TRVGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLE---- 139
Query: 93 KPPDWQDFVGIVC-LLVINSTISFIEEXXXXXXXXXXXXXXXPKTKLLRDGKWSEEEAAI 151
DW DF G++C LL++N+ + F++E K +LRDG E EA
Sbjct: 140 ---DWVDF-GVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPE 195
Query: 152 LVPGDIISIKLGDIIPADARLLEGDP-LKVDQSALTGESLPVTKNPGDEVFSGSTCKQGE 210
+VPGDI+ ++ G IIPAD R++ D L+VDQSALTGESL V K+ GD+VF+ S K+GE
Sbjct: 196 VVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGE 255
Query: 211 IEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTAIGNFCICSIAVGMLVEIIVMYPI 269
V+ ATG +TF G+AA LV++ + GHF +VL IG + + +L+ + +
Sbjct: 256 AFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSF-- 313
Query: 270 QHRKYRDG-----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEM 324
YR ++ L + I G+P+ +P V++ TMA+G+ L+++ AI ++++AIE +
Sbjct: 314 ----YRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESL 369
Query: 325 AGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDHVMLLAARASRTENQ--DAIDAAI 382
AG+++LCSDKTGTLT NKLS+ GV+ + +ML A A+ + + DAID A
Sbjct: 370 AGVEILCSDKTGTLTKNKLSLHDPYT---VAGVDPEDLMLTACLAASRKKKGIDAIDKAF 426
Query: 383 VGMLADPKEARAGIRE---VHFFPFNPVDKRTALTYIDSDGHWHRASKGAPEQILALCNA 439
+ L A++ + + + F PF+PV K+ G KGAP +L
Sbjct: 427 LKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEE 486
Query: 440 K----EDLKKKVHAIIDKYAERGLRSLAVARQEVPERTKESPGGPWQFVGLLPLFDPPRH 495
E++ + + ++A RG RSL VAR+ G W+ +G++P DPPRH
Sbjct: 487 DHPIPEEVDQAYKNKVAEFATRGFRSLGVARKR--------GEGSWEILGIMPCMDPPRH 538
Query: 496 DSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPV 555
D+ +T+ A LG+++KM+TGD + IA+ET R+LG+GTN+Y +A LG + V
Sbjct: 539 DTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIY-NAERLGLGGGGDMPGSEV 597
Query: 556 EELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXX 615
+ +E ADGFA VFP+HKY +V+ LQ+R ++ MTGDGVNDAP+LKK
Sbjct: 598 YDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDA 657
Query: 616 XXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRI-VFGFMFIALIWKFD 674
IV PGL II A+ TSR IF RM Y +Y ++++I + +F ++IA++ +
Sbjct: 658 ARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNR-S 716
Query: 675 FSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLAL---MTVIF 731
+ +V+ IAI D + I+ D S P W L +++ V+LG LA+ +TV
Sbjct: 717 LNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLGVVLAVGTWITVTT 776
Query: 732 FWAMHETDFFPDKFGVRAIRDSEHEMMAALYLQVSIVSQALIFVTRSRSWSYLERPGLLL 791
+A E FG M L+LQ+S+ LIF+TR+ + P L
Sbjct: 777 MYAQGENGGIVQNFG---------NMDEVLFLQISLTENWLIFITRANGPFWSSIPSWQL 827
Query: 792 VTAFVIAQLVATLIAVYANWGFARIKGVGWGWAGVIWLYSIVFYVPLDVMKFAIRYILSG 851
A + ++AT + WG+ IW++S + + + YIL
Sbjct: 828 SGAIFLVDILATCFTI---WGWFEHSDTSIVAVVRIWIFSFGIFCIMG----GVYYILQD 880
Query: 852 KAWL-NLLENKTAFTTKKDYGKEE 874
NL+ K+ +K E+
Sbjct: 881 SVGFDNLMHGKSPKGNQKQRSLED 904
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 169/697 (24%), Positives = 290/697 (41%), Gaps = 125/697 (17%)
Query: 91 EGKPPDWQDFVGIV--CLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKLLRDGKWSEEE 148
E +P + ++G+V ++++ S+ +E + ++RDG+ S
Sbjct: 127 EDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTIN 186
Query: 149 AAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPG----------D 198
A +V GD++ +K GD IPAD R++ KVD S+LTGES P T++P +
Sbjct: 187 AEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRN 246
Query: 199 EVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQ-KVLTAIGNFCICSIAV 257
F + C +G VV+ TG T G+ A L S +VG + I +AV
Sbjct: 247 IAFFSTNCVEGTARGVVVYTGDRTVMGRIATLA-SGLEVGRTPIAIEIEHFIHIITGVAV 305
Query: 258 GMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKR 317
+ V ++ I + + + L+ +++ +P + ++V + + + R++++ + K
Sbjct: 306 FLGVSFFILSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKN 365
Query: 318 MTAIEEMAGMDVLCSDKTGTLTLNKLSV-----DKNLIE--------------------- 351
+ A+E + +CSDKTGTLT N+++V D + E
Sbjct: 366 LEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSA 425
Query: 352 -----------VFAKGVEKDHVMLLAARASRTENQDAIDAAIVGMLADPKEARAGIRE-- 398
VF G +D+V +L R+ DA ++A++ + + G+R+
Sbjct: 426 LSRIAALCNRAVFQAG--QDNVPIL----KRSVAGDASESALLKCIELCCGSVQGMRDRN 479
Query: 399 --VHFFPFNPVDKRTALTYID---SDGHWHRASKGAPEQILALCNA----------KEDL 443
+ PFN +K + + S+ + KGAPE+IL C+ KED+
Sbjct: 480 PKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDM 539
Query: 444 KKKVHAIIDKYAERGLRSLAVARQEVPERTKESPGGPWQ------------FVGLLPLFD 491
K+ + G R L +PE K + G P+ FVGL+ + D
Sbjct: 540 KEAFQNAYLELGGLGERVLGFCHFALPE-DKYNEGYPFDADEPNFPTTDLCFVGLMAMID 598
Query: 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGM---GTNMYPSASL-----LG 543
PPR + + + + G+ V M+TGD AK + +G+ G + +G
Sbjct: 599 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIG 658
Query: 544 Q--DKDASIAALPVEEL----IEKADG---------FAGVFPEHKYEIVKKLQERKHICG 588
Q +DA + +L E D FA P+ K IV+ Q + I
Sbjct: 659 QVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVA 718
Query: 589 MTGDGVNDAPALKKXXX-XXXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMK 647
+TGDGVND+PALKK ++L + + I++ V R IF +K
Sbjct: 719 VTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK 778
Query: 648 NYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIA 684
Y ++ I + +PF+V II
Sbjct: 779 KSIAYTLTSNIP--------------EITPFLVFIIG 801
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 162/697 (23%), Positives = 287/697 (41%), Gaps = 125/697 (17%)
Query: 91 EGKPPDWQDFVGIV--CLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKLLRDGKWSEEE 148
E +P + ++G+V +++I S+ +E + ++R+G+
Sbjct: 97 EEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSIN 156
Query: 149 AAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPG----------D 198
A +V GD++ +K GD IPAD R++ + KVD S+LTGES P T++P +
Sbjct: 157 AEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRN 216
Query: 199 EVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNF 250
F + C +G +V+ TG T G+ A L ++ HF ++T
Sbjct: 217 IAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITG---- 272
Query: 251 CICSIAVGMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQ 310
+AV + V ++ I + + + L+ +++ +P + ++V + + + R+++
Sbjct: 273 ----VAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMAR 328
Query: 311 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSV-----DKNLIEVFA----KGVEKD- 360
+ + K + A+E + +CSDKTGTLT N+++V D + E GV D
Sbjct: 329 KNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDK 388
Query: 361 ---------HVMLLAARASRTENQ------------DAIDAAIVGML----ADPKEARAG 395
+ L RA NQ DA ++A++ + KE R
Sbjct: 389 TSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRER 448
Query: 396 IREVHFFPFNPVDKRTALTYIDSDGHWHR---ASKGAPEQILALCNA----------KED 442
++ PFN +K + + + R KGAPE+IL C++ E+
Sbjct: 449 YTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEE 508
Query: 443 LK---KKVHAIIDKYAER--GLRSLAVARQEVPERTK------ESPGGPWQFVGLLPLFD 491
LK + + + ER G L + ++ PE + P FVGL+ + D
Sbjct: 509 LKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMID 568
Query: 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLG-------- 543
PPR + + + + G+ V M+TGD AK + +G+ + + +
Sbjct: 569 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVS 628
Query: 544 --QDKDASIAALPVEEL----IEKADG---------FAGVFPEHKYEIVKKLQERKHICG 588
+DA + +L E+ D FA P+ K IV+ Q + I
Sbjct: 629 QVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVA 688
Query: 589 MTGDGVNDAPALKKXXX-XXXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMK 647
+TGDGVND+PA KK ++L + + I++ V R IF +K
Sbjct: 689 VTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK 748
Query: 648 NYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIA 684
Y ++ I + +PF++ IIA
Sbjct: 749 KSIAYTLTSNIP--------------EITPFLIFIIA 771
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 164/705 (23%), Positives = 288/705 (40%), Gaps = 141/705 (20%)
Query: 91 EGKPPDWQDFVGIV--CLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKLLRDGKWSEEE 148
E +P + ++G+V +++I S+ +E + ++R+G+
Sbjct: 91 EEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSIN 150
Query: 149 AAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPG----------D 198
A +V GD++ +K GD IPAD R++ + KVD S+LTGES P T++P +
Sbjct: 151 AEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRN 210
Query: 199 EVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNF 250
F + C +G +V+ TG T G+ A L ++ HF ++T
Sbjct: 211 IAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITG---- 266
Query: 251 CICSIAVGMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQ 310
+AV + V ++ I + + + L+ +++ +P + ++V + + + R+++
Sbjct: 267 ----VAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMAR 322
Query: 311 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSV-----DKNLIEVFA----KGVEKD- 360
+ + K + A+E + +CS KTGTLT N+++V D + E GV D
Sbjct: 323 KNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDK 382
Query: 361 ---------HVMLLAARASRTENQ------------DAIDAAIVGML----ADPKEARAG 395
+ L RA NQ DA ++A++ + KE R
Sbjct: 383 TSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRER 442
Query: 396 IREVHFFPFNPVDKRTALTYIDSDGHWHR---ASKGAPEQILALCNA----------KED 442
++ PFN +K + + + R KGAPE+IL C++ E+
Sbjct: 443 YTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEE 502
Query: 443 LK---KKVHAIIDKYAER--GLRSLAVARQEVPERTK------ESPGGPWQFVGLLPLFD 491
LK + + + ER G L + ++ PE + P FVGL+ + D
Sbjct: 503 LKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMID 562
Query: 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIA 551
PPR + + + + G+ V M+TGD AK + +G+ + G + IA
Sbjct: 563 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISE--------GNETVEDIA 614
Query: 552 A---LPVEEL-------------------IEKADG---------FAGVFPEHKYEIVKKL 580
A +PV ++ E+ D FA P+ K IV+
Sbjct: 615 ARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGC 674
Query: 581 QERKHICGMTGDGVNDAPALKKXXX-XXXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTS 639
Q + I +TGDGVND+PA KK ++L + + I++ V
Sbjct: 675 QRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEG 734
Query: 640 RAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIA 684
R IF +K Y ++ I + +PF++ IIA
Sbjct: 735 RLIFDNLKKSIAYTLTSNIP--------------EITPFLIFIIA 765
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 154/659 (23%), Positives = 262/659 (39%), Gaps = 109/659 (16%)
Query: 101 VGIVCLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKLLRDGKWSEEEAAILVPGDIISI 160
+ ++ ++V+ + +E + ++RDG + A LV GD++ +
Sbjct: 144 LALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEM 203
Query: 161 KLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPG----------DEVFSGSTCKQGE 210
K GD +PAD R+L+ KVD S+LTGES P T++P + F + C +G
Sbjct: 204 KGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGT 263
Query: 211 IEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAVGMLVE 262
+ +V+ TG T G+ A L ++ HF + I I A +V
Sbjct: 264 AQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDI---IAGLAILFGATFFIVA 320
Query: 263 IIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIE 322
+ + Y + + + +++ +P + ++V +++ + RL+ + + K + A+E
Sbjct: 321 MCIGY-----TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVE 375
Query: 323 EMAGMDVLCSDKTGTLTLNKLSVDK----NLI-----------EVFAKGVEK----DHVM 363
+ V+CSDKTGTLT N+++V N I + F + E V+
Sbjct: 376 TLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVL 435
Query: 364 LLAARASRTENQDAIDAAIVGMLADPKEAR------------AGIRE----VHFFPFNPV 407
L RA+ QDA+ ++ D E G RE V PFN
Sbjct: 436 TLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNST 495
Query: 408 DKRTALTYIDSDGHWHR---ASKGAPEQILALCNA----KEDLK---------KKVHAII 451
+K + D R KGAPE++L C++ ++L + + +
Sbjct: 496 NKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSL 555
Query: 452 DKYAER--GLRSLAVARQEVPE------RTKESPGGPWQFVGLLPLFDPPRHDSAETIRR 503
ER G L ++ ++ P P F GL+ + DPPR + + +
Sbjct: 556 GGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLK 615
Query: 504 ALNLGVNVKMITGDQLAIAKETGRRLGMGTN------------MYPSASLLGQDKDASI- 550
G+ V M+TGD AK +G+ + P + +D A +
Sbjct: 616 CRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVI 675
Query: 551 -----AALPVEELIEKADG-----FAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPAL 600
+ EL+E FA P+ K IV+ Q I +TGDGVND+PAL
Sbjct: 676 NGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPAL 735
Query: 601 KKXXX-XXXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI 658
KK ++L + + I++ V R IF +K Y ++ I
Sbjct: 736 KKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNI 794
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 148/343 (43%), Gaps = 60/343 (17%)
Query: 427 KGAPEQILALCN----------AKEDLKKKVHAIIDKYA--ERGLRSLAVARQEVPERTK 474
KGAPE ++ CN +K+K+ ++I ++ LR LA+A ++ P + +
Sbjct: 514 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 573
Query: 475 E----------SPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 524
E FVG++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 574 EMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 633
Query: 525 TGRRLGMGTNMYPSASLLGQDKDASIAA--------LPVEELIE---KADGFAGVFPEHK 573
RR+G + G+++D + A LP+ E E +A FA V P HK
Sbjct: 634 ICRRIG----------IFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHK 683
Query: 574 YEIVKKLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXIVLTEPGLSVII 633
+IV+ LQ I MTGDGVNDAPALKK +VL + S I+
Sbjct: 684 SKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIV 743
Query: 634 SAVLTSRAIFQRMKNYTIYAVSITI-RIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIM 692
+AV RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 744 AAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPA 803
Query: 693 TI------------SKDRVKPSPLPDSWKLKEIFATGVVLGGY 723
T R PL W +F + +GGY
Sbjct: 804 TALGFNPPDLDIMDRPPRTPKEPLISGW----LFFRYMAIGGY 842
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 29/226 (12%)
Query: 152 LVPGDIISIKLGDIIPADARLL--EGDPLKVDQSALTGESLPVTK-------------NP 196
+VPGDI+ + +GD +PAD R+L + L+VDQS LTGES+ V K +
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 204
Query: 197 GDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIG 248
+ +FSG+ G+ +V TGV T GK + +T Q + F + L+ +
Sbjct: 205 KNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264
Query: 249 NFCICSIAVGMLVEIIVMYPIQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIG 304
+ IC +AV ++ P+ + G + L + IP +P V++ +A+G
Sbjct: 265 SL-IC-VAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALG 322
Query: 305 SHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLI 350
+ R++++ AI + + ++E + V+CSDKTGTLT N++SV K I
Sbjct: 323 TRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 136/291 (46%), Gaps = 32/291 (10%)
Query: 427 KGAPEQILALCN----------AKEDLKKKVHAIIDKYA--ERGLRSLAVARQEVPERTK 474
KGAPE ++ CN +K+K+ ++I ++ LR LA+A ++ P + +
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 475 E----------SPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 524
E FVG++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 635
Query: 525 TGRRLGM-GTNM-YPSASLLGQDKDASIAALPVEELIE---KADGFAGVFPEHKYEIVKK 579
RR+G+ G N + G++ D LP+ E E +A FA V P HK +IV+
Sbjct: 636 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 691
Query: 580 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTS 639
LQ I MTGDGVNDAPALKK +VL + S I++AV
Sbjct: 692 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 751
Query: 640 RAIFQRMKNYTIYAVSITI-RIVFGFMFIALIWKFDFSPFMVLIIAILNDG 689
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 752 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 802
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 29/226 (12%)
Query: 152 LVPGDIISIKLGDIIPADARLL--EGDPLKVDQSALTGESLPVTK-------------NP 196
+VPGDI+ + +GD +PAD R+L + L+VDQS LTGES+ V K +
Sbjct: 146 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 205
Query: 197 GDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIG 248
+ +FSG+ G+ +V TGV T GK + +T Q + F + L+ +
Sbjct: 206 KNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 265
Query: 249 NFCICSIAVGMLVEIIVMYPIQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIG 304
+ IC +AV ++ P+ + G + L + IP +P V++ +A+G
Sbjct: 266 SL-IC-VAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALG 323
Query: 305 SHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLI 350
+ R++++ AI + + ++E + V+CSDKTGTLT N++SV K I
Sbjct: 324 TRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 136/291 (46%), Gaps = 32/291 (10%)
Query: 427 KGAPEQILALCN----------AKEDLKKKVHAIIDKYA--ERGLRSLAVARQEVPERTK 474
KGAPE ++ CN +K+K+ ++I ++ LR LA+A ++ P + +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 475 E----------SPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 524
E FVG++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 525 TGRRLGM-GTNM-YPSASLLGQDKDASIAALPVEELIE---KADGFAGVFPEHKYEIVKK 579
RR+G+ G N + G++ D LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 580 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTS 639
LQ I MTGDGVNDAPALKK +VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 640 RAIFQRMKNYTIYAVSITI-RIVFGFMFIALIWKFDFSPFMVLIIAILNDG 689
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 29/226 (12%)
Query: 152 LVPGDIISIKLGDIIPADARLL--EGDPLKVDQSALTGESLPVTK-------------NP 196
+VPGDI+ + +GD +PAD R+L + L+VDQS LTGES+ V K +
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 204
Query: 197 GDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIG 248
+ +FSG+ G+ +V TGV T GK + +T Q + F + L+ +
Sbjct: 205 KNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264
Query: 249 NFCICSIAVGMLVEIIVMYPIQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIG 304
+ IC +AV ++ P+ + G + L + IP +P V++ +A+G
Sbjct: 265 SL-IC-VAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALG 322
Query: 305 SHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLI 350
+ R++++ AI + + ++E + V+CSDKTGTLT N++SV K I
Sbjct: 323 TRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 136/291 (46%), Gaps = 32/291 (10%)
Query: 427 KGAPEQILALCN----------AKEDLKKKVHAIIDKYA--ERGLRSLAVARQEVPERTK 474
KGAPE ++ CN +K+K+ ++I ++ LR LA+A ++ P + +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 475 E----------SPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 524
E FVG++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 525 TGRRLGM-GTNM-YPSASLLGQDKDASIAALPVEELIE---KADGFAGVFPEHKYEIVKK 579
RR+G+ G N + G++ D LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 580 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTS 639
LQ I MTGDGVNDAPALKK +VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 640 RAIFQRMKNYTIYAVSITI-RIVFGFMFIALIWKFDFSPFMVLIIAILNDG 689
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 29/226 (12%)
Query: 152 LVPGDIISIKLGDIIPADARLL--EGDPLKVDQSALTGESLPVTK-------------NP 196
+VPGDI+ + +GD +PAD R+L + L+VDQS LTGES+ V K +
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 204
Query: 197 GDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIG 248
+ +FSG+ G+ +V TGV T GK + +T Q + F + L+ +
Sbjct: 205 KNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264
Query: 249 NFCICSIAVGMLVEIIVMYPIQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIG 304
+ IC +AV ++ P+ + G + L + IP +P V++ +A+G
Sbjct: 265 SL-IC-VAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALG 322
Query: 305 SHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLI 350
+ R++++ AI + + ++E + V+CS KTGTLT N++SV K I
Sbjct: 323 TRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 129/527 (24%), Positives = 213/527 (40%), Gaps = 85/527 (16%)
Query: 138 LLRDGK---WSEEEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 194
++RDGK EE A+ GDI+ ++ G+ IP D ++EG+ VD+S ++GE +PV K
Sbjct: 137 VIRDGKEIAVPVEEVAV---GDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLK 192
Query: 195 NPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNFCIC 253
+ GDEVF + G ++ G T + LV D+ Q++ + + I
Sbjct: 193 SKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIP 252
Query: 254 SIAVGMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLS 309
++ + + I Y I H L+ +L+ P +A PT L+V M G +
Sbjct: 253 TVLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----A 308
Query: 310 QQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDHVMLLAARA 369
+ G + K A+E + + DKTGTLT K V +L+ + G E++ + L A
Sbjct: 309 ELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV-TDLVPL--NGDERELLRLAAIAE 365
Query: 370 SRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGHWHRASKGA 429
R+E+ I AIV + AL + G + A
Sbjct: 366 RRSEHP--IAEAIV--------------------------KKALEHGIELGEPEKVEVIA 397
Query: 430 PEQILA--LCNAKEDLKKKVHAIIDKYAERGLRSLAVARQEVPERTKESPGGPWQFVGLL 487
E ++A + + L + + E LA+ + E +T + G++
Sbjct: 398 GEGVVADGILVGNKRLMEDFGVAVSNEVE-----LALEKLEREAKTAVIVARNGRVEGII 452
Query: 488 PLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKD 547
+ D + + ++ +G+ V MITGD A+ R L +
Sbjct: 453 AVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------------- 496
Query: 548 ASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKXXXXX 607
+L+ A V P K E VKKLQ K + GDG+NDAPAL +
Sbjct: 497 ---------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 541
Query: 608 XXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
IVL L +++A+ SR ++K +A+
Sbjct: 542 AVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 588
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 129/527 (24%), Positives = 213/527 (40%), Gaps = 85/527 (16%)
Query: 138 LLRDGKWSE---EEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 194
++RDGK EE A+ GDI+ ++ G+ IP D ++EG+ VD+S ++GE +PV K
Sbjct: 215 VIRDGKEIAVPVEEVAV---GDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLK 270
Query: 195 NPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNFCIC 253
+ GDEVF + G ++ G T + LV D+ Q++ + + I
Sbjct: 271 SKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIP 330
Query: 254 SIAVGMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLS 309
++ + + I Y I H L+ +L+ P +A PT L+V M G +
Sbjct: 331 TVLLVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----A 386
Query: 310 QQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDHVMLLAARA 369
+ G + K A+E + + DKTGTLT K V +L+ + G E++ + L A
Sbjct: 387 ELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV-TDLVPL--NGDERELLRLAAIAE 443
Query: 370 SRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGHWHRASKGA 429
R+E+ I AIV + AL + G + A
Sbjct: 444 RRSEHP--IAEAIV--------------------------KKALEHGIELGEPEKVEVIA 475
Query: 430 PEQILA--LCNAKEDLKKKVHAIIDKYAERGLRSLAVARQEVPERTKESPGGPWQFVGLL 487
E ++A + + L + + E LA+ + E +T + G++
Sbjct: 476 GEGVVADGILVGNKRLMEDFGVAVSNEVE-----LALEKLEREAKTAVIVARNGRVEGII 530
Query: 488 PLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKD 547
+ D + + ++ +G+ V MITGD A+ R L +
Sbjct: 531 AVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------------- 574
Query: 548 ASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKXXXXX 607
+L+ A V P K E VKKLQ K + GDG+NDAPAL +
Sbjct: 575 ---------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 619
Query: 608 XXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
IVL L +++A+ SR ++K +A+
Sbjct: 620 AVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 666
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 125/474 (26%), Positives = 199/474 (41%), Gaps = 76/474 (16%)
Query: 137 KLLRDGKWSEEEAAI--LVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 194
++ DG SEEE ++ + GD++ ++ G+ IP D + EG VD+S +TGE +PV K
Sbjct: 229 RIKEDG--SEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAK 285
Query: 195 NPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVL-TAIGNFCI 252
+V + + G + G T + +V D+ Q++ T G F
Sbjct: 286 EASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVP 345
Query: 253 CSIAVGMLVEII--VMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQ 310
I V +L I+ ++ P Y G+ + +LI P A+ +++ +G + +Q
Sbjct: 346 AVILVAVLSFIVWALLGPQPALSY--GLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQ 403
Query: 311 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDHVMLLAARAS 370
G + K A+E M ++ L DKTGTLT + + + + F VE + + L AA
Sbjct: 404 SGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDF---VEDNALALAAALEH 460
Query: 371 RTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGHWHRASKGAP 430
++E+ A AIV KE + V F P K DGH
Sbjct: 461 QSEHPLA--NAIV---HAAKEKGLSLGSVEAFE-APTGKGVVGQV---DGHH-------- 503
Query: 431 EQILALCNAK--EDLKKKVHAIIDKYAERGLRSLAVARQEVPERTKESPGGPWQFVGLLP 488
+A+ NA+ ++ + +K E + +V V +T V LL
Sbjct: 504 ---VAIGNARLMQEHGGDNAPLFEKADELRGKGASVMFMAVDGKT----------VALLV 550
Query: 489 LFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDA 548
+ DP + + ETI G+ + M+TGD A+ LG
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG------------------ 592
Query: 549 SIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKK 602
I+K A + PE K IV +L+++ I M GDGVNDAPAL K
Sbjct: 593 ----------IKKV--VAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
>pdb|2O98|P Chain P, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|Q Chain Q, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 52
Score = 84.3 bits (207), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/52 (73%), Positives = 48/52 (92%)
Query: 902 SSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 953
+++ EL+++AE+AKRRAE+AR RELHTLKGHVESVVKLKGLDI+TIQQ Y +
Sbjct: 1 TNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYDI 52
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 39/149 (26%)
Query: 459 LRSLAVARQEVPERTKESPGGPWQFV-------GLLPLFDPPRHDSAETIRRALNLGVNV 511
+R L + E E+ K+ G F+ G++ L D R +S E I + +G+
Sbjct: 105 IRELGIKTDESVEKLKQQ-GKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKC 163
Query: 512 KMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPE 571
M+TGD +AK LG+ D FA V P
Sbjct: 164 MMLTGDNRFVAKWVAEELGLD------------------------------DYFAEVLPH 193
Query: 572 HKYEIVKKLQERKHICGMTGDGVNDAPAL 600
K E VK++Q+ K++ M GDGVNDAPAL
Sbjct: 194 EKAEKVKEVQQ-KYVTAMVGDGVNDAPAL 221
>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 31
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 924 RELHTLKGHVESVVKLKGLDIDTIQQHYTV 953
RELHTLKGHVE+VVKLKGLDI+TIQQ Y +
Sbjct: 2 RELHTLKGHVEAVVKLKGLDIETIQQSYDI 31
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 39/149 (26%)
Query: 459 LRSLAVARQEVPERTKESPGGPWQFV-------GLLPLFDPPRHDSAETIRRALNLGVNV 511
+R L + E E+ K+ G F+ G++ L D R +S E I + +G+
Sbjct: 105 IRELGIKTDESVEKLKQQ-GKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKC 163
Query: 512 KMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPE 571
M+TGD +AK LG+ D FA V P
Sbjct: 164 MMLTGDNRFVAKWVAEELGLD------------------------------DYFAEVLPH 193
Query: 572 HKYEIVKKLQERKHICGMTGDGVNDAPAL 600
K E VK++Q+ K++ M GDGVNDAPAL
Sbjct: 194 EKAEKVKEVQQ-KYVTAMVGDGVNDAPAL 221
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 155 GDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAV 214
GDII + G P D R++EG + VD+S +TGE++PV K PG V +GS + G +
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVIAGSINQNGSLLIC 103
Query: 215 VIATGVHTFFGKAAHLVD 232
G T + LV+
Sbjct: 104 ATHVGADTTLSQIVKLVE 121
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 138 LLRDGK---WSEEEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 194
++RDGK EE A+ GDI+ ++ G+ IP D ++EG+ VD+S ++GE +PV K
Sbjct: 16 VIRDGKEIAVPVEEVAV---GDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLK 71
Query: 195 NPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVD 232
+ GDEVF + G ++ G T + LV+
Sbjct: 72 SKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 485 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQ 544
G++ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 545 DKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKXX 604
+L+ A V P K E VKKLQ K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 605 XXXXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMK 647
IVL L +++A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 485 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQ 544
G++ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 545 DKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKXX 604
+L+ A V P K E VKKLQ K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 605 XXXXXXXXXXXXXXXXXIVLTEPGLSVIISAVLTSRAIFQRMK 647
IVL L +++A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 565 FAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXIVL 624
A V P K E VKKLQ K + GDG+NDAPAL + IVL
Sbjct: 186 IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVL 244
Query: 625 TEPGLSVIISAVLTSR 640
L +++A+ SR
Sbjct: 245 IRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 565 FAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPAL 600
A V P K E VKKLQ K + GDG+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPAL 99
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 402 FPFNPVDKRTALTYIDSDGHWHRASKGAPEQILALCNA----------KEDLKKKVHAII 451
PF+ +R ++ ++ H KGA ++IL +C+ + + +K+ +
Sbjct: 62 IPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVT 121
Query: 452 DKYAERGLRSLAVARQEVPER 472
D +GLR +AVA + +P R
Sbjct: 122 DTLNRQGLRVVAVATKYLPAR 142
>pdb|3TG9|A Chain A, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
pdb|3TG9|B Chain B, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
Length = 356
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 393 RAGIREVHFFPFNPVDKRTALTYID-SDGHW 422
RAG+ E +F F+ + +TAL YID DG W
Sbjct: 183 RAGMHESGYFAFDTLPAKTALGYIDLEDGSW 213
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 541 LLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVN 595
+L DK+ + L E I++ ++ + PE K I++KL++ + M GDGVN
Sbjct: 157 ILSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 541 LLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVN 595
+L DK+ + L E I++ ++ + PE K I++KL++ + M GDGVN
Sbjct: 157 ILSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 541 LLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVN 595
+L DK+ + L E I++ ++ + PE K I++KL++ + M GDGVN
Sbjct: 157 ILSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|3ZBD|A Chain A, Structure Of Tgev Nsp1
pdb|3ZBD|B Chain B, Structure Of Tgev Nsp1
Length = 113
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 541 LLGQDKDASIAALPVEELIEKA-----DGFAG-VF-PEHKYEIVKKLQERKHICGMTGDG 593
L+ +D ++ +LP+ +++++ +GF G VF PE+ ++V ++ ++ G+ G+G
Sbjct: 17 LVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNG 76
Query: 594 VND 596
V+D
Sbjct: 77 VSD 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,274,307
Number of Sequences: 62578
Number of extensions: 1042247
Number of successful extensions: 2573
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2446
Number of HSP's gapped (non-prelim): 79
length of query: 953
length of database: 14,973,337
effective HSP length: 108
effective length of query: 845
effective length of database: 8,214,913
effective search space: 6941601485
effective search space used: 6941601485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)